Query 019359
Match_columns 342
No_of_seqs 143 out of 1443
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00110 helicase; Provisional 100.0 2E-55 4.3E-60 400.3 37.9 342 1-342 103-447 (545)
2 KOG0331 ATP-dependent RNA heli 100.0 3.6E-56 7.8E-61 385.7 30.7 315 28-342 92-411 (519)
3 PLN00206 DEAD-box ATP-dependen 100.0 1E-52 2.2E-57 381.7 38.5 340 1-342 95-438 (518)
4 KOG0333 U5 snRNP-like RNA heli 100.0 7.3E-53 1.6E-57 356.0 28.6 340 1-342 219-587 (673)
5 KOG0330 ATP-dependent RNA heli 100.0 2E-52 4.3E-57 341.5 25.5 313 23-342 57-370 (476)
6 KOG0328 Predicted ATP-dependen 100.0 4.9E-52 1.1E-56 325.7 25.4 322 15-342 15-336 (400)
7 COG0513 SrmB Superfamily II DN 100.0 4.4E-51 9.6E-56 368.4 35.0 312 26-342 28-343 (513)
8 PRK04837 ATP-dependent RNA hel 100.0 1.1E-50 2.3E-55 362.2 36.5 318 23-342 4-325 (423)
9 PRK10590 ATP-dependent RNA hel 100.0 2.3E-50 4.9E-55 362.2 35.5 313 28-342 2-315 (456)
10 PRK11776 ATP-dependent RNA hel 100.0 2.7E-50 5.9E-55 363.3 35.9 309 26-342 3-312 (460)
11 PRK11192 ATP-dependent RNA hel 100.0 1.6E-49 3.5E-54 356.3 36.6 312 28-342 2-315 (434)
12 KOG0339 ATP-dependent RNA heli 100.0 1.7E-50 3.6E-55 340.5 27.8 342 1-342 197-538 (731)
13 PRK04537 ATP-dependent RNA hel 100.0 1.2E-49 2.6E-54 363.6 35.1 314 27-342 9-327 (572)
14 PRK11634 ATP-dependent RNA hel 100.0 1.9E-49 4.2E-54 364.1 35.3 309 27-342 6-315 (629)
15 KOG0336 ATP-dependent RNA heli 100.0 4.6E-49 9.9E-54 324.0 24.5 341 1-342 186-535 (629)
16 PTZ00424 helicase 45; Provisio 100.0 1.2E-47 2.6E-52 341.9 35.6 310 26-342 27-337 (401)
17 PRK01297 ATP-dependent RNA hel 100.0 3.9E-47 8.5E-52 343.6 37.0 315 26-342 86-405 (475)
18 KOG0340 ATP-dependent RNA heli 100.0 2.5E-47 5.4E-52 308.1 24.5 314 23-341 3-323 (442)
19 KOG0342 ATP-dependent RNA heli 100.0 3.8E-47 8.3E-52 319.4 25.6 320 22-342 77-400 (543)
20 KOG0338 ATP-dependent RNA heli 100.0 9.5E-48 2.1E-52 324.1 21.6 311 28-341 182-495 (691)
21 KOG0341 DEAD-box protein abstr 100.0 8.4E-48 1.8E-52 314.6 17.4 338 1-341 144-490 (610)
22 KOG0335 ATP-dependent RNA heli 100.0 1.2E-46 2.6E-51 321.1 25.1 328 14-342 61-407 (482)
23 KOG0345 ATP-dependent RNA heli 100.0 1E-45 2.2E-50 309.0 28.6 315 26-341 3-326 (567)
24 KOG0343 RNA Helicase [RNA proc 100.0 5.6E-46 1.2E-50 316.2 26.1 317 23-342 65-385 (758)
25 KOG0326 ATP-dependent RNA heli 100.0 7.6E-47 1.7E-51 301.4 16.7 311 24-342 82-392 (459)
26 KOG0334 RNA helicase [RNA proc 100.0 1E-45 2.2E-50 337.0 25.5 340 1-341 338-682 (997)
27 KOG0346 RNA helicase [RNA proc 100.0 4.3E-44 9.3E-49 297.0 21.8 312 19-330 11-326 (569)
28 KOG0348 ATP-dependent RNA heli 100.0 2.5E-43 5.5E-48 299.0 24.2 318 25-342 134-517 (708)
29 KOG0332 ATP-dependent RNA heli 100.0 9.4E-43 2E-47 283.4 22.0 314 19-342 82-400 (477)
30 TIGR03817 DECH_helic helicase/ 100.0 1.3E-41 2.9E-46 318.3 31.7 295 33-342 20-349 (742)
31 KOG0347 RNA helicase [RNA proc 100.0 7.2E-43 1.6E-47 297.1 15.5 316 24-342 178-533 (731)
32 KOG0337 ATP-dependent RNA heli 100.0 3E-41 6.5E-46 278.7 20.1 311 26-341 20-330 (529)
33 PRK02362 ski2-like helicase; P 100.0 3.2E-40 7E-45 312.2 29.6 298 27-341 1-348 (737)
34 TIGR00614 recQ_fam ATP-depende 100.0 5.3E-40 1.2E-44 296.0 29.6 278 43-342 5-296 (470)
35 KOG0327 Translation initiation 100.0 7.1E-41 1.5E-45 274.2 20.1 312 21-341 20-332 (397)
36 PRK00254 ski2-like helicase; P 100.0 1.1E-39 2.4E-44 307.8 29.7 298 28-341 2-340 (720)
37 PLN03137 ATP-dependent DNA hel 100.0 2.9E-39 6.3E-44 302.1 31.8 298 26-342 434-750 (1195)
38 KOG4284 DEAD box protein [Tran 100.0 1.7E-40 3.7E-45 287.6 21.2 318 18-342 16-342 (980)
39 PRK13767 ATP-dependent helicas 100.0 7.3E-39 1.6E-43 305.6 29.5 307 34-342 18-360 (876)
40 PRK11057 ATP-dependent DNA hel 100.0 3.4E-38 7.3E-43 291.4 31.5 286 34-342 9-306 (607)
41 PRK01172 ski2-like helicase; P 100.0 2.1E-38 4.6E-43 297.9 27.7 300 27-341 1-330 (674)
42 TIGR01389 recQ ATP-dependent D 100.0 4.5E-38 9.8E-43 291.5 29.4 281 41-342 4-294 (591)
43 COG1201 Lhr Lhr-like helicases 100.0 4.1E-38 9E-43 288.4 27.4 301 34-342 8-324 (814)
44 KOG0344 ATP-dependent RNA heli 100.0 9.9E-39 2.1E-43 274.8 20.4 334 8-342 113-458 (593)
45 TIGR00580 mfd transcription-re 100.0 7.2E-37 1.6E-41 289.2 31.0 281 37-342 440-732 (926)
46 KOG0350 DEAD-box ATP-dependent 100.0 1.8E-37 3.8E-42 261.6 22.2 314 23-341 123-502 (620)
47 PHA02558 uvsW UvsW helicase; P 100.0 2.2E-36 4.9E-41 273.8 29.3 317 4-342 67-415 (501)
48 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.7E-36 5.8E-41 278.0 29.9 290 39-340 5-354 (844)
49 PRK10689 transcription-repair 100.0 3.7E-36 8.1E-41 290.2 31.7 283 35-342 587-881 (1147)
50 PRK10917 ATP-dependent DNA hel 100.0 7.4E-36 1.6E-40 278.7 30.7 282 36-342 249-551 (681)
51 PRK09401 reverse gyrase; Revie 100.0 1.6E-35 3.4E-40 286.5 30.9 277 40-340 71-398 (1176)
52 COG1111 MPH1 ERCC4-like helica 100.0 1.5E-35 3.2E-40 251.6 26.7 288 46-342 12-445 (542)
53 TIGR00643 recG ATP-dependent D 100.0 5E-35 1.1E-39 271.5 30.7 283 36-342 223-528 (630)
54 COG1204 Superfamily II helicas 100.0 1.9E-34 4.2E-39 267.5 24.6 297 32-340 14-358 (766)
55 PRK14701 reverse gyrase; Provi 100.0 1.1E-33 2.5E-38 279.2 31.2 284 37-342 67-403 (1638)
56 COG0514 RecQ Superfamily II DN 100.0 8.1E-34 1.8E-38 251.4 24.9 283 39-342 6-300 (590)
57 COG1202 Superfamily II helicas 100.0 1.8E-33 3.9E-38 241.4 26.0 302 25-340 192-508 (830)
58 TIGR01054 rgy reverse gyrase. 100.0 3E-33 6.5E-38 271.1 29.7 279 39-340 68-397 (1171)
59 PRK09751 putative ATP-dependen 100.0 3.9E-33 8.5E-38 271.1 26.5 271 69-342 1-347 (1490)
60 KOG0354 DEAD-box like helicase 100.0 1E-32 2.2E-37 247.4 23.6 288 46-342 59-494 (746)
61 cd00268 DEADc DEAD-box helicas 100.0 8.2E-32 1.8E-36 217.7 23.3 202 29-233 1-202 (203)
62 TIGR01587 cas3_core CRISPR-ass 100.0 4.4E-32 9.6E-37 238.1 21.6 264 66-339 1-295 (358)
63 COG1200 RecG RecG-like helicas 100.0 1.9E-31 4.1E-36 236.0 25.3 280 38-342 252-553 (677)
64 TIGR00603 rad25 DNA repair hel 100.0 1.5E-31 3.2E-36 244.4 24.6 267 49-342 255-562 (732)
65 TIGR01970 DEAH_box_HrpB ATP-de 100.0 8.6E-31 1.9E-35 245.7 28.5 268 53-342 6-282 (819)
66 COG1061 SSL2 DNA or RNA helica 100.0 1.8E-31 3.9E-36 237.2 22.2 269 49-342 36-352 (442)
67 TIGR03158 cas3_cyano CRISPR-as 100.0 1.8E-30 3.9E-35 225.4 27.8 271 53-341 1-337 (357)
68 PHA02653 RNA helicase NPH-II; 100.0 7.1E-31 1.5E-35 240.7 25.7 273 52-342 167-466 (675)
69 PRK11664 ATP-dependent RNA hel 100.0 9.8E-31 2.1E-35 245.9 27.1 268 53-342 9-285 (812)
70 COG1205 Distinct helicase fami 100.0 2.9E-30 6.3E-35 243.1 28.0 297 35-341 56-383 (851)
71 PRK13766 Hef nuclease; Provisi 100.0 8E-30 1.7E-34 244.3 31.3 287 47-342 13-443 (773)
72 KOG0329 ATP-dependent RNA heli 100.0 4.1E-31 9E-36 205.3 13.0 277 25-342 40-318 (387)
73 KOG0952 DNA/RNA helicase MER3/ 100.0 3.6E-29 7.8E-34 228.1 21.7 293 43-340 104-440 (1230)
74 TIGR03714 secA2 accessory Sec 100.0 1.1E-28 2.4E-33 225.6 23.6 278 49-339 68-489 (762)
75 KOG0353 ATP-dependent DNA heli 100.0 3.5E-29 7.7E-34 205.5 17.6 300 27-342 69-387 (695)
76 PRK12898 secA preprotein trans 100.0 1E-27 2.2E-32 216.9 27.3 277 45-339 100-538 (656)
77 TIGR00963 secA preprotein tran 100.0 6.6E-28 1.4E-32 219.3 24.5 278 45-340 53-471 (745)
78 COG1197 Mfd Transcription-repa 100.0 1.8E-27 3.8E-32 222.2 27.0 279 39-342 585-875 (1139)
79 COG4098 comFA Superfamily II D 100.0 3.9E-27 8.6E-32 190.8 25.3 266 49-342 97-375 (441)
80 KOG0351 ATP-dependent DNA heli 100.0 3.3E-28 7.1E-33 227.9 22.0 283 41-342 256-555 (941)
81 PRK09200 preprotein translocas 100.0 3.5E-27 7.6E-32 217.8 25.5 281 44-341 74-498 (790)
82 PRK05580 primosome assembly pr 100.0 8.6E-27 1.9E-31 217.2 28.2 273 49-342 144-500 (679)
83 PRK11448 hsdR type I restricti 100.0 1.9E-26 4.1E-31 222.6 25.6 278 49-342 413-776 (1123)
84 PF00270 DEAD: DEAD/DEAH box h 100.0 7.4E-27 1.6E-31 183.3 17.1 164 51-220 1-167 (169)
85 PRK13104 secA preprotein trans 100.0 2.2E-26 4.7E-31 212.4 22.6 277 45-339 79-509 (896)
86 PRK09694 helicase Cas3; Provis 99.9 9.1E-26 2E-30 212.1 25.7 285 48-339 285-638 (878)
87 TIGR00595 priA primosomal prot 99.9 9.3E-26 2E-30 203.1 24.4 253 68-342 1-332 (505)
88 KOG0951 RNA helicase BRR2, DEA 99.9 3E-26 6.6E-31 212.0 21.6 301 32-340 294-651 (1674)
89 KOG0352 ATP-dependent DNA heli 99.9 1.2E-26 2.7E-31 193.0 17.0 288 37-342 6-325 (641)
90 PRK12904 preprotein translocas 99.9 1.5E-25 3.3E-30 206.5 22.6 277 45-339 78-495 (830)
91 KOG0349 Putative DEAD-box RNA 99.9 6.8E-26 1.5E-30 189.0 15.5 240 100-341 286-577 (725)
92 PRK11131 ATP-dependent RNA hel 99.9 8.7E-25 1.9E-29 209.9 25.3 263 51-342 76-357 (1294)
93 PRK04914 ATP-dependent helicas 99.9 2.5E-24 5.5E-29 203.7 26.6 283 49-342 152-566 (956)
94 PRK12899 secA preprotein trans 99.9 8.3E-24 1.8E-28 195.2 25.4 148 30-187 65-228 (970)
95 TIGR01967 DEAH_box_HrpA ATP-de 99.9 8.8E-23 1.9E-27 196.9 25.4 264 54-342 72-350 (1283)
96 PRK13107 preprotein translocas 99.9 1.4E-23 3E-28 193.4 19.0 277 45-339 79-514 (908)
97 TIGR00348 hsdR type I site-spe 99.9 1.1E-22 2.5E-27 189.6 23.8 278 49-342 238-611 (667)
98 COG4096 HsdR Type I site-speci 99.9 3E-23 6.4E-28 186.8 18.5 273 47-342 163-501 (875)
99 COG4581 Superfamily II RNA hel 99.9 2.1E-22 4.5E-27 188.4 22.7 283 40-340 111-488 (1041)
100 COG1110 Reverse gyrase [DNA re 99.9 7.7E-22 1.7E-26 180.7 22.8 271 45-341 79-406 (1187)
101 TIGR01407 dinG_rel DnaQ family 99.9 8.9E-21 1.9E-25 182.3 28.7 297 35-341 232-744 (850)
102 KOG0947 Cytoplasmic exosomal R 99.9 1.2E-21 2.6E-26 177.7 21.2 273 43-340 292-674 (1248)
103 smart00487 DEXDc DEAD-like hel 99.9 3E-21 6.4E-26 155.6 21.3 187 44-236 3-191 (201)
104 PRK12906 secA preprotein trans 99.9 1.9E-21 4.1E-26 179.0 21.2 277 45-339 77-505 (796)
105 KOG0950 DNA polymerase theta/e 99.9 1.6E-21 3.4E-26 177.6 20.1 297 33-342 206-568 (1008)
106 COG1203 CRISPR-associated heli 99.9 2.9E-21 6.2E-26 182.1 20.5 287 49-339 195-511 (733)
107 PLN03142 Probable chromatin-re 99.9 1.2E-20 2.6E-25 179.7 24.3 280 49-341 169-559 (1033)
108 KOG0948 Nuclear exosomal RNA h 99.9 7.2E-22 1.6E-26 175.0 14.0 273 45-340 126-490 (1041)
109 COG1198 PriA Primosomal protei 99.9 1E-19 2.2E-24 166.8 22.6 275 48-342 197-554 (730)
110 COG0556 UvrB Helicase subunit 99.8 2.6E-20 5.5E-25 159.9 15.2 130 205-342 386-516 (663)
111 COG1643 HrpA HrpA-like helicas 99.8 9.6E-19 2.1E-23 162.8 23.6 270 50-342 51-333 (845)
112 KOG1123 RNA polymerase II tran 99.8 7.6E-20 1.7E-24 155.7 14.9 267 49-342 302-609 (776)
113 PRK12326 preprotein translocas 99.8 1.1E-18 2.4E-23 157.8 23.0 277 45-339 75-492 (764)
114 PRK07246 bifunctional ATP-depe 99.8 4.1E-18 8.9E-23 161.9 26.0 276 45-340 242-712 (820)
115 cd00046 DEXDc DEAD-like helica 99.8 2.1E-18 4.6E-23 131.0 16.2 144 65-215 1-144 (144)
116 PF04851 ResIII: Type III rest 99.8 5.7E-19 1.2E-23 140.4 12.7 153 49-217 3-184 (184)
117 PRK13103 secA preprotein trans 99.8 2.6E-18 5.7E-23 159.0 18.5 276 45-339 79-514 (913)
118 COG4889 Predicted helicase [Ge 99.8 3.8E-20 8.2E-25 166.9 4.3 302 28-341 141-547 (1518)
119 KOG0385 Chromatin remodeling c 99.8 1.8E-17 3.9E-22 148.0 19.9 279 49-340 167-558 (971)
120 PRK08074 bifunctional ATP-depe 99.8 3.7E-16 7.9E-21 151.3 27.6 85 256-340 734-822 (928)
121 KOG0387 Transcription-coupled 99.8 1E-16 2.2E-21 143.7 21.6 280 49-341 205-618 (923)
122 TIGR03117 cas_csf4 CRISPR-asso 99.8 7.5E-16 1.6E-20 140.5 26.7 75 262-338 458-538 (636)
123 KOG0922 DEAH-box RNA helicase 99.8 3.6E-16 7.8E-21 138.4 23.0 269 50-342 52-336 (674)
124 CHL00122 secA preprotein trans 99.8 6.6E-17 1.4E-21 149.2 18.0 277 45-339 73-491 (870)
125 KOG0920 ATP-dependent RNA heli 99.7 1E-15 2.3E-20 142.5 23.2 278 49-341 173-489 (924)
126 PRK12902 secA preprotein trans 99.7 5.4E-16 1.2E-20 143.1 20.2 277 45-339 82-506 (939)
127 PRK12900 secA preprotein trans 99.7 2E-16 4.3E-21 147.4 17.2 86 252-339 577-663 (1025)
128 KOG0389 SNF2 family DNA-depend 99.7 3E-16 6.5E-21 140.7 15.9 280 49-340 399-847 (941)
129 KOG1000 Chromatin remodeling p 99.7 2.6E-15 5.7E-20 128.2 20.7 274 49-339 198-561 (689)
130 PRK12903 secA preprotein trans 99.7 7.6E-16 1.6E-20 141.6 18.8 276 45-339 75-491 (925)
131 TIGR00631 uvrb excinuclease AB 99.7 2.2E-15 4.7E-20 139.6 21.8 90 253-342 422-512 (655)
132 KOG0384 Chromodomain-helicase 99.7 1.9E-16 4.1E-21 147.9 14.5 317 4-340 328-770 (1373)
133 KOG0923 mRNA splicing factor A 99.7 1.4E-14 3.1E-19 127.7 19.9 273 46-342 262-552 (902)
134 KOG0390 DNA repair protein, SN 99.7 4.6E-14 1E-18 129.4 23.0 160 49-215 238-414 (776)
135 KOG0392 SNF2 family DNA-depend 99.6 2E-14 4.3E-19 134.5 19.5 159 49-215 975-1138(1549)
136 KOG0949 Predicted helicase, DE 99.6 2.3E-14 5E-19 131.4 18.4 160 49-218 511-674 (1330)
137 KOG0924 mRNA splicing factor A 99.6 7.1E-14 1.5E-18 123.8 19.1 271 47-342 354-643 (1042)
138 PRK11747 dinG ATP-dependent DN 99.6 4.7E-13 1E-17 126.0 25.9 82 256-340 517-603 (697)
139 COG1199 DinG Rad3-related DNA 99.6 1.8E-13 4E-18 129.5 22.9 73 43-122 9-85 (654)
140 TIGR00604 rad3 DNA repair heli 99.6 4.7E-13 1E-17 126.9 23.7 74 45-123 6-83 (705)
141 PF02399 Herpes_ori_bp: Origin 99.6 3.3E-13 7.1E-18 123.7 20.2 253 65-340 50-344 (824)
142 PRK05298 excinuclease ABC subu 99.6 5.4E-13 1.2E-17 124.7 21.8 88 255-342 428-516 (652)
143 PF00176 SNF2_N: SNF2 family N 99.6 5.5E-14 1.2E-18 120.7 12.8 157 53-216 1-173 (299)
144 KOG0953 Mitochondrial RNA heli 99.5 3.6E-14 7.8E-19 123.0 10.7 229 64-338 191-425 (700)
145 PF07652 Flavi_DEAD: Flaviviru 99.5 5.9E-14 1.3E-18 102.0 8.9 137 62-219 2-140 (148)
146 KOG1002 Nucleotide excision re 99.5 6.7E-12 1.4E-16 107.8 17.1 128 49-189 184-331 (791)
147 KOG0951 RNA helicase BRR2, DEA 99.4 3E-12 6.4E-17 120.6 16.0 260 51-331 1145-1440(1674)
148 KOG0926 DEAH-box RNA helicase 99.4 6.4E-12 1.4E-16 113.6 16.7 224 55-294 262-503 (1172)
149 KOG0925 mRNA splicing factor A 99.4 9E-12 1.9E-16 106.8 16.3 287 26-341 24-332 (699)
150 KOG4439 RNA polymerase II tran 99.4 5.4E-12 1.2E-16 112.5 14.9 139 49-189 325-478 (901)
151 COG0610 Type I site-specific r 99.4 1.7E-11 3.7E-16 118.6 19.5 139 65-217 274-415 (962)
152 PRK12901 secA preprotein trans 99.4 5.5E-12 1.2E-16 118.4 15.4 126 50-185 168-301 (1112)
153 smart00489 DEXDc3 DEAD-like he 99.4 1.7E-11 3.6E-16 103.5 13.4 76 45-123 5-84 (289)
154 smart00488 DEXDc2 DEAD-like he 99.4 1.7E-11 3.6E-16 103.5 13.4 76 45-123 5-84 (289)
155 KOG4150 Predicted ATP-dependen 99.4 1.3E-11 2.7E-16 107.9 12.6 288 43-341 280-602 (1034)
156 KOG0386 Chromatin remodeling c 99.3 4.5E-12 9.9E-17 117.0 9.8 280 49-340 394-797 (1157)
157 PRK14873 primosome assembly pr 99.3 2.7E-10 5.7E-15 105.9 19.4 133 68-218 164-306 (665)
158 TIGR02562 cas3_yersinia CRISPR 99.3 3.3E-10 7.3E-15 107.1 19.7 168 48-222 407-641 (1110)
159 cd00079 HELICc Helicase superf 99.3 6.6E-11 1.4E-15 88.3 11.6 87 256-342 11-98 (131)
160 KOG0388 SNF2 family DNA-depend 99.3 1.8E-10 3.8E-15 103.2 14.5 127 49-188 567-709 (1185)
161 COG0653 SecA Preprotein transl 99.2 4.8E-10 1E-14 103.9 15.2 274 51-339 80-494 (822)
162 PF07517 SecA_DEAD: SecA DEAD- 99.2 4.2E-10 9E-15 92.5 13.0 131 44-187 73-210 (266)
163 PF06862 DUF1253: Protein of u 99.1 1.2E-08 2.5E-13 89.4 20.4 181 150-331 131-359 (442)
164 KOG1015 Transcription regulato 99.1 2E-08 4.3E-13 93.1 18.6 82 260-341 1129-1237(1567)
165 KOG0391 SNF2 family DNA-depend 99.0 1.6E-09 3.4E-14 102.0 10.2 156 49-217 615-777 (1958)
166 PF00271 Helicase_C: Helicase 99.0 1E-09 2.2E-14 73.7 5.8 53 290-342 1-53 (78)
167 PF13086 AAA_11: AAA domain; P 98.9 5E-09 1.1E-13 86.6 8.2 73 49-122 1-75 (236)
168 KOG0952 DNA/RNA helicase MER3/ 98.9 2.3E-09 4.9E-14 100.2 6.2 259 52-324 930-1207(1230)
169 KOG1802 RNA helicase nonsense 98.9 1E-07 2.2E-12 85.3 16.3 86 41-137 402-487 (935)
170 COG0553 HepA Superfamily II DN 98.9 8.7E-08 1.9E-12 94.5 17.6 136 48-189 337-487 (866)
171 PF13604 AAA_30: AAA domain; P 98.9 1.8E-08 4E-13 80.2 9.4 123 49-214 1-129 (196)
172 PF13872 AAA_34: P-loop contai 98.9 5.5E-08 1.2E-12 80.3 12.2 157 49-218 37-223 (303)
173 PRK15483 type III restriction- 98.8 9.7E-08 2.1E-12 90.9 15.1 143 65-217 60-240 (986)
174 KOG2340 Uncharacterized conser 98.8 5.4E-08 1.2E-12 84.9 11.5 282 48-331 215-611 (698)
175 PF02562 PhoH: PhoH-like prote 98.8 6.3E-09 1.4E-13 82.1 5.0 145 48-214 3-155 (205)
176 smart00490 HELICc helicase sup 98.8 2.2E-08 4.7E-13 67.8 5.8 56 287-342 2-57 (82)
177 PF12340 DUF3638: Protein of u 98.6 9.1E-07 2E-11 70.6 11.9 127 28-164 4-144 (229)
178 TIGR00376 DNA helicase, putati 98.5 9.2E-07 2E-11 82.9 11.7 66 49-122 157-223 (637)
179 PRK10536 hypothetical protein; 98.5 2.2E-06 4.8E-11 69.8 12.3 142 45-211 55-209 (262)
180 TIGR01447 recD exodeoxyribonuc 98.5 1.9E-06 4.1E-11 79.8 12.8 140 52-212 148-293 (586)
181 TIGR01448 recD_rel helicase, p 98.5 2.8E-06 6E-11 80.9 13.9 128 45-214 320-452 (720)
182 PRK10875 recD exonuclease V su 98.5 1.9E-06 4.2E-11 79.9 12.1 142 51-214 154-301 (615)
183 KOG1803 DNA helicase [Replicat 98.5 5E-07 1.1E-11 80.4 7.6 64 49-120 185-249 (649)
184 PF09848 DUF2075: Uncharacteri 98.5 9.6E-07 2.1E-11 77.3 9.1 95 66-188 3-97 (352)
185 KOG1132 Helicase of the DEAD s 98.4 2.4E-06 5.2E-11 79.3 11.1 79 45-124 18-134 (945)
186 COG3421 Uncharacterized protei 98.2 2.2E-05 4.7E-10 70.2 12.5 153 68-236 1-184 (812)
187 TIGR02768 TraA_Ti Ti-type conj 98.2 3.4E-05 7.4E-10 73.9 14.8 121 49-212 352-474 (744)
188 PF13245 AAA_19: Part of AAA d 98.2 6.4E-06 1.4E-10 54.3 6.9 53 64-120 10-62 (76)
189 COG1875 NYN ribonuclease and A 98.2 6.8E-06 1.5E-10 69.2 8.0 66 43-113 222-289 (436)
190 KOG1805 DNA replication helica 98.2 1.3E-05 2.7E-10 75.4 10.1 127 46-188 666-810 (1100)
191 PRK13889 conjugal transfer rel 98.1 7.2E-05 1.6E-09 73.0 14.3 126 45-214 343-470 (988)
192 PRK04296 thymidine kinase; Pro 98.1 1.6E-05 3.4E-10 63.2 7.4 112 65-214 3-114 (190)
193 PRK13826 Dtr system oriT relax 98.0 0.00014 3.1E-09 71.4 14.7 136 35-214 368-505 (1102)
194 KOG1131 RNA polymerase II tran 98.0 3.6E-05 7.7E-10 67.7 9.4 75 44-122 11-89 (755)
195 PF00580 UvrD-helicase: UvrD/R 98.0 1.6E-05 3.5E-10 68.7 7.3 123 50-184 1-125 (315)
196 TIGR02760 TraI_TIGR conjugativ 98.0 0.0011 2.4E-08 70.0 21.4 236 49-322 429-686 (1960)
197 KOG0921 Dosage compensation co 98.0 8.1E-05 1.8E-09 69.6 11.7 270 54-340 383-718 (1282)
198 COG1419 FlhF Flagellar GTP-bin 98.0 0.00027 5.9E-09 61.2 13.8 132 64-227 203-336 (407)
199 COG3587 Restriction endonuclea 98.0 2.8E-05 6E-10 72.3 8.2 143 65-219 75-246 (985)
200 PRK06526 transposase; Provisio 97.9 2.9E-05 6.2E-10 64.3 6.9 29 60-88 94-122 (254)
201 PRK12723 flagellar biosynthesi 97.9 0.00042 9.2E-09 60.9 13.6 131 65-226 175-309 (388)
202 PF13401 AAA_22: AAA domain; P 97.9 6.9E-05 1.5E-09 55.6 7.6 37 176-215 89-125 (131)
203 PRK08181 transposase; Validate 97.9 0.00022 4.8E-09 59.5 11.2 48 60-116 102-149 (269)
204 PF00448 SRP54: SRP54-type pro 97.8 8.5E-05 1.8E-09 59.1 7.8 122 67-219 4-129 (196)
205 KOG0989 Replication factor C, 97.8 9.9E-05 2.1E-09 61.0 7.3 44 171-215 126-169 (346)
206 PF13307 Helicase_C_2: Helicas 97.8 4.6E-05 9.9E-10 59.1 5.1 67 272-340 9-79 (167)
207 KOG0298 DEAD box-containing he 97.7 0.00014 3E-09 70.6 8.5 153 64-222 374-557 (1394)
208 PRK14974 cell division protein 97.7 0.00058 1.3E-08 58.8 11.6 130 66-226 142-275 (336)
209 KOG1001 Helicase-like transcri 97.6 0.00033 7.1E-09 65.7 9.6 139 65-216 153-293 (674)
210 cd00009 AAA The AAA+ (ATPases 97.6 0.00058 1.3E-08 51.5 9.6 17 64-80 19-35 (151)
211 smart00382 AAA ATPases associa 97.6 0.00019 4.1E-09 53.8 6.4 42 64-113 2-43 (148)
212 PRK11889 flhF flagellar biosyn 97.6 0.0018 3.9E-08 56.4 12.2 128 65-226 242-374 (436)
213 KOG1016 Predicted DNA helicase 97.6 0.0016 3.6E-08 60.4 12.4 175 31-215 244-472 (1387)
214 PF05970 PIF1: PIF1-like helic 97.6 0.00014 3.1E-09 63.9 5.8 59 49-115 1-65 (364)
215 PRK14722 flhF flagellar biosyn 97.6 0.00044 9.4E-09 60.3 8.6 131 64-226 137-269 (374)
216 PRK11054 helD DNA helicase IV; 97.5 0.00044 9.6E-09 65.5 9.0 80 48-133 195-274 (684)
217 COG2805 PilT Tfp pilus assembl 97.5 0.00021 4.6E-09 58.9 5.3 55 20-93 99-153 (353)
218 PRK07952 DNA replication prote 97.5 0.0028 6.2E-08 52.1 12.0 34 65-106 100-133 (244)
219 TIGR01075 uvrD DNA helicase II 97.4 0.00071 1.5E-08 65.2 9.2 72 48-125 3-74 (715)
220 PRK10919 ATP-dependent DNA hel 97.4 0.00036 7.8E-09 66.5 6.9 70 49-124 2-71 (672)
221 PRK11773 uvrD DNA-dependent he 97.4 0.00073 1.6E-08 65.1 9.0 83 48-136 8-92 (721)
222 PRK06921 hypothetical protein; 97.4 0.0022 4.8E-08 53.7 10.6 38 64-108 117-154 (266)
223 PRK12377 putative replication 97.4 0.0021 4.5E-08 53.0 10.2 45 65-118 102-146 (248)
224 PRK08116 hypothetical protein; 97.4 0.0027 5.9E-08 53.2 11.1 43 65-116 115-157 (268)
225 PRK05703 flhF flagellar biosyn 97.4 0.0025 5.4E-08 57.1 11.3 130 64-226 221-354 (424)
226 PRK06835 DNA replication prote 97.4 0.0034 7.4E-08 54.1 11.4 44 64-116 183-226 (329)
227 PRK14712 conjugal transfer nic 97.3 0.0021 4.5E-08 65.8 11.3 65 49-117 835-901 (1623)
228 cd01120 RecA-like_NTPases RecA 97.3 0.0041 8.9E-08 47.8 10.8 39 67-113 2-40 (165)
229 PTZ00293 thymidine kinase; Pro 97.3 0.0026 5.6E-08 50.7 9.5 38 64-109 4-41 (211)
230 PF05127 Helicase_RecD: Helica 97.3 0.00027 5.9E-09 54.6 3.6 124 68-216 1-124 (177)
231 COG1435 Tdk Thymidine kinase [ 97.3 0.0054 1.2E-07 47.7 10.6 89 66-186 6-94 (201)
232 KOG0383 Predicted helicase [Ge 97.3 3.2E-05 6.8E-10 71.6 -2.0 77 258-335 616-696 (696)
233 COG1484 DnaC DNA replication p 97.2 0.0007 1.5E-08 56.2 5.9 53 61-122 102-154 (254)
234 PRK08727 hypothetical protein; 97.2 0.0022 4.7E-08 52.7 8.7 35 65-107 42-76 (233)
235 cd01124 KaiC KaiC is a circadi 97.2 0.0041 8.9E-08 49.2 10.1 48 67-123 2-49 (187)
236 PRK05642 DNA replication initi 97.2 0.0024 5.2E-08 52.5 8.9 43 174-216 97-140 (234)
237 PHA02533 17 large terminase pr 97.2 0.0042 9.1E-08 57.2 11.1 69 49-123 59-127 (534)
238 PRK13709 conjugal transfer nic 97.2 0.0041 8.9E-08 64.4 12.0 64 49-116 967-1032(1747)
239 PF00308 Bac_DnaA: Bacterial d 97.2 0.0017 3.7E-08 52.7 7.6 107 66-219 36-144 (219)
240 PHA03333 putative ATPase subun 97.2 0.0098 2.1E-07 55.3 13.1 57 62-125 185-241 (752)
241 TIGR02785 addA_Gpos recombinat 97.2 0.0013 2.8E-08 67.0 8.3 123 50-185 2-126 (1232)
242 TIGR01074 rep ATP-dependent DN 97.1 0.0013 2.7E-08 63.1 7.4 69 50-124 2-70 (664)
243 PRK00149 dnaA chromosomal repl 97.1 0.0057 1.2E-07 55.7 11.1 45 65-116 149-193 (450)
244 PTZ00112 origin recognition co 97.1 0.007 1.5E-07 58.0 11.5 21 68-89 785-805 (1164)
245 PRK14956 DNA polymerase III su 97.1 0.0025 5.4E-08 57.3 8.3 18 66-83 42-59 (484)
246 PRK12727 flagellar biosynthesi 97.1 0.014 3.1E-07 53.0 12.9 57 29-85 301-371 (559)
247 KOG0391 SNF2 family DNA-depend 97.1 0.0014 3.1E-08 63.4 6.8 88 253-340 1256-1346(1958)
248 PRK14087 dnaA chromosomal repl 97.1 0.0036 7.8E-08 56.7 9.2 49 65-120 142-190 (450)
249 PRK14958 DNA polymerase III su 97.1 0.0091 2E-07 54.9 11.6 39 173-212 118-156 (509)
250 PRK06893 DNA replication initi 97.0 0.0023 5.1E-08 52.4 7.1 44 173-216 90-135 (229)
251 TIGR00362 DnaA chromosomal rep 97.0 0.0074 1.6E-07 54.2 10.9 38 65-108 137-174 (405)
252 PF00004 AAA: ATPase family as 97.0 0.014 2.9E-07 43.1 10.7 14 67-80 1-14 (132)
253 TIGR01073 pcrA ATP-dependent D 97.0 0.0036 7.8E-08 60.6 9.3 72 48-125 3-74 (726)
254 KOG1513 Nuclear helicase MOP-3 97.0 0.0016 3.4E-08 60.7 6.3 156 49-216 264-455 (1300)
255 PRK08084 DNA replication initi 97.0 0.0035 7.5E-08 51.6 7.9 19 64-82 45-63 (235)
256 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0058 1.3E-07 50.0 9.1 20 63-82 37-56 (226)
257 PRK00771 signal recognition pa 97.0 0.0095 2.1E-07 53.4 10.9 51 175-225 176-227 (437)
258 PRK12323 DNA polymerase III su 97.0 0.0063 1.4E-07 56.6 9.9 40 173-213 123-162 (700)
259 PRK07003 DNA polymerase III su 97.0 0.0095 2.1E-07 56.4 11.1 39 173-212 118-156 (830)
260 COG3973 Superfamily I DNA and 97.0 0.0042 9.1E-08 56.3 8.4 87 35-124 191-284 (747)
261 PRK12422 chromosomal replicati 97.0 0.0044 9.6E-08 55.9 8.7 41 65-114 142-182 (445)
262 PRK07994 DNA polymerase III su 96.9 0.0083 1.8E-07 56.3 10.5 38 173-211 118-155 (647)
263 PRK05707 DNA polymerase III su 96.9 0.0083 1.8E-07 51.9 9.8 35 49-83 3-41 (328)
264 PRK09183 transposase/IS protei 96.9 0.0035 7.5E-08 52.4 7.1 45 61-114 99-143 (259)
265 PRK14086 dnaA chromosomal repl 96.9 0.0051 1.1E-07 57.0 8.3 106 66-218 316-423 (617)
266 PRK08903 DnaA regulatory inact 96.9 0.0065 1.4E-07 49.8 8.4 20 63-82 41-60 (227)
267 PRK12402 replication factor C 96.9 0.012 2.6E-07 51.5 10.4 39 173-212 124-162 (337)
268 PF05621 TniB: Bacterial TniB 96.8 0.0053 1.1E-07 51.5 7.5 52 65-121 62-117 (302)
269 PHA02544 44 clamp loader, smal 96.8 0.0057 1.2E-07 53.0 8.0 39 174-212 100-138 (316)
270 PF03354 Terminase_1: Phage Te 96.8 0.0074 1.6E-07 55.3 9.1 71 52-126 1-80 (477)
271 TIGR01547 phage_term_2 phage t 96.8 0.0078 1.7E-07 53.9 9.1 136 66-218 3-143 (396)
272 PRK06645 DNA polymerase III su 96.8 0.012 2.5E-07 53.9 10.1 19 65-83 44-62 (507)
273 PRK14964 DNA polymerase III su 96.8 0.009 1.9E-07 54.3 9.3 19 65-83 36-54 (491)
274 PRK06731 flhF flagellar biosyn 96.8 0.034 7.4E-07 46.5 12.0 129 64-226 75-208 (270)
275 TIGR01425 SRP54_euk signal rec 96.8 0.033 7.2E-07 49.6 12.4 58 66-134 102-161 (429)
276 TIGR03499 FlhF flagellar biosy 96.8 0.0051 1.1E-07 52.1 7.1 21 65-85 195-215 (282)
277 PRK11331 5-methylcytosine-spec 96.8 0.0077 1.7E-07 53.6 8.4 30 53-82 183-212 (459)
278 PRK05986 cob(I)alamin adenolsy 96.8 0.0082 1.8E-07 47.0 7.6 141 63-221 21-164 (191)
279 PRK14960 DNA polymerase III su 96.7 0.016 3.4E-07 54.2 10.4 19 65-83 38-56 (702)
280 TIGR02760 TraI_TIGR conjugativ 96.7 0.013 2.9E-07 62.2 11.3 61 49-116 1019-1084(1960)
281 PLN03025 replication factor C 96.7 0.026 5.7E-07 48.9 11.5 38 174-212 99-136 (319)
282 COG2256 MGS1 ATPase related to 96.7 0.0068 1.5E-07 52.4 7.5 18 65-82 49-66 (436)
283 PRK14723 flhF flagellar biosyn 96.7 0.01 2.2E-07 56.5 9.3 127 65-226 186-317 (767)
284 PRK14949 DNA polymerase III su 96.7 0.013 2.8E-07 56.5 10.1 38 173-211 118-155 (944)
285 PRK14088 dnaA chromosomal repl 96.7 0.018 3.9E-07 52.1 10.6 38 65-108 131-168 (440)
286 PRK14965 DNA polymerase III su 96.7 0.029 6.3E-07 52.6 12.1 39 173-212 118-156 (576)
287 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.013 2.8E-07 44.7 8.0 134 67-222 5-145 (159)
288 COG1444 Predicted P-loop ATPas 96.7 0.03 6.5E-07 53.0 11.9 151 40-216 205-357 (758)
289 PRK04195 replication factor C 96.7 0.018 4E-07 52.9 10.5 18 64-81 39-56 (482)
290 PRK00411 cdc6 cell division co 96.6 0.026 5.7E-07 50.5 11.2 24 65-89 56-79 (394)
291 PRK14961 DNA polymerase III su 96.6 0.026 5.5E-07 49.9 10.6 18 66-83 40-57 (363)
292 PF05496 RuvB_N: Holliday junc 96.6 0.0053 1.2E-07 49.2 5.7 18 65-82 51-68 (233)
293 PF13177 DNA_pol3_delta2: DNA 96.6 0.009 1.9E-07 46.0 6.9 43 173-216 101-143 (162)
294 COG4626 Phage terminase-like p 96.6 0.018 4E-07 52.0 9.6 149 49-214 61-224 (546)
295 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.021 4.5E-07 47.2 9.4 53 63-124 20-72 (237)
296 PRK08769 DNA polymerase III su 96.6 0.021 4.5E-07 49.1 9.5 43 48-91 3-52 (319)
297 PRK08533 flagellar accessory p 96.6 0.058 1.3E-06 44.2 11.8 54 61-123 21-74 (230)
298 cd01122 GP4d_helicase GP4d_hel 96.6 0.012 2.6E-07 49.7 8.1 54 60-121 26-79 (271)
299 TIGR02881 spore_V_K stage V sp 96.6 0.033 7.2E-07 46.7 10.5 18 65-82 43-60 (261)
300 PRK05563 DNA polymerase III su 96.6 0.056 1.2E-06 50.5 12.9 19 65-83 39-57 (559)
301 PHA03368 DNA packaging termina 96.6 0.019 4.1E-07 53.3 9.5 132 63-214 253-389 (738)
302 PRK14962 DNA polymerase III su 96.5 0.024 5.2E-07 51.6 10.2 18 66-83 38-55 (472)
303 PRK05973 replicative DNA helic 96.5 0.036 7.7E-07 45.4 10.2 55 60-123 60-114 (237)
304 TIGR02782 TrbB_P P-type conjug 96.5 0.015 3.2E-07 49.7 8.2 66 39-112 108-174 (299)
305 PRK12726 flagellar biosynthesi 96.5 0.049 1.1E-06 47.6 11.3 119 64-216 206-328 (407)
306 PRK07764 DNA polymerase III su 96.5 0.018 4E-07 55.9 9.6 39 173-212 119-157 (824)
307 PF14617 CMS1: U3-containing 9 96.5 0.0086 1.9E-07 49.2 6.2 86 99-185 125-212 (252)
308 COG4962 CpaF Flp pilus assembl 96.5 0.012 2.6E-07 50.0 7.2 59 46-113 154-213 (355)
309 COG0470 HolB ATPase involved i 96.5 0.03 6.5E-07 48.6 10.2 40 173-213 108-147 (325)
310 PF01695 IstB_IS21: IstB-like 96.4 0.0054 1.2E-07 48.1 4.8 46 61-115 44-89 (178)
311 TIGR00064 ftsY signal recognit 96.4 0.099 2.1E-06 44.0 12.6 123 65-218 73-205 (272)
312 PRK14951 DNA polymerase III su 96.4 0.026 5.6E-07 52.9 9.9 18 66-83 40-57 (618)
313 COG3972 Superfamily I DNA and 96.4 0.041 8.8E-07 49.0 10.3 71 47-124 160-230 (660)
314 PRK13833 conjugal transfer pro 96.4 0.014 3.1E-07 50.0 7.6 65 40-112 121-186 (323)
315 PRK08691 DNA polymerase III su 96.4 0.02 4.4E-07 53.8 9.1 19 65-83 39-57 (709)
316 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.063 1.4E-06 44.0 11.2 52 63-123 19-70 (229)
317 PRK14969 DNA polymerase III su 96.4 0.048 1E-06 50.5 11.4 39 173-212 118-156 (527)
318 PRK08939 primosomal protein Dn 96.4 0.043 9.2E-07 47.0 10.3 26 64-90 156-181 (306)
319 PRK14873 primosome assembly pr 96.4 0.02 4.3E-07 54.3 9.0 78 255-332 170-250 (665)
320 PRK12724 flagellar biosynthesi 96.4 0.049 1.1E-06 48.3 10.7 124 66-224 225-354 (432)
321 PF06745 KaiC: KaiC; InterPro 96.4 0.013 2.8E-07 48.0 6.9 133 63-214 18-159 (226)
322 PRK13894 conjugal transfer ATP 96.4 0.013 2.8E-07 50.4 7.0 68 37-112 122-190 (319)
323 PRK13342 recombination factor 96.3 0.048 1E-06 49.1 10.9 18 65-82 37-54 (413)
324 TIGR00708 cobA cob(I)alamin ad 96.3 0.018 4E-07 44.4 7.0 50 173-222 96-147 (173)
325 KOG0991 Replication factor C, 96.3 0.014 3E-07 46.7 6.3 42 172-214 111-152 (333)
326 PRK06995 flhF flagellar biosyn 96.3 0.018 4E-07 52.1 7.9 22 64-85 256-277 (484)
327 PRK14952 DNA polymerase III su 96.3 0.063 1.4E-06 50.1 11.5 39 173-212 117-155 (584)
328 PRK06067 flagellar accessory p 96.3 0.096 2.1E-06 43.1 11.6 53 63-124 24-76 (234)
329 PRK11823 DNA repair protein Ra 96.3 0.041 8.8E-07 49.9 10.0 91 64-188 80-170 (446)
330 PRK10917 ATP-dependent DNA hel 96.2 0.024 5.3E-07 54.4 8.9 93 249-341 286-384 (681)
331 cd01121 Sms Sms (bacterial rad 96.2 0.049 1.1E-06 47.9 10.1 90 64-187 82-171 (372)
332 cd00984 DnaB_C DnaB helicase C 96.2 0.04 8.8E-07 45.6 9.2 41 61-108 10-50 (242)
333 PRK13341 recombination factor 96.2 0.046 9.9E-07 52.5 10.5 18 65-82 53-70 (725)
334 TIGR00596 rad1 DNA repair prot 96.2 0.016 3.4E-07 56.0 7.5 68 150-217 7-74 (814)
335 PRK09111 DNA polymerase III su 96.2 0.046 9.9E-07 51.3 10.3 19 65-83 47-65 (598)
336 PHA00729 NTP-binding motif con 96.2 0.065 1.4E-06 43.3 9.7 74 151-224 59-137 (226)
337 PRK14955 DNA polymerase III su 96.2 0.063 1.4E-06 48.0 10.8 18 66-83 40-57 (397)
338 PF02572 CobA_CobO_BtuR: ATP:c 96.2 0.078 1.7E-06 40.9 9.7 137 67-220 6-144 (172)
339 PF13173 AAA_14: AAA domain 96.2 0.083 1.8E-06 38.8 9.7 38 174-215 61-98 (128)
340 COG2109 BtuR ATP:corrinoid ade 96.2 0.066 1.4E-06 41.4 9.0 140 67-223 31-173 (198)
341 CHL00181 cbbX CbbX; Provisiona 96.2 0.03 6.5E-07 47.6 8.1 20 64-83 59-78 (287)
342 KOG1133 Helicase of the DEAD s 96.1 0.0074 1.6E-07 55.5 4.5 83 255-340 610-707 (821)
343 COG1198 PriA Primosomal protei 96.1 0.026 5.6E-07 53.6 8.1 85 248-332 220-306 (730)
344 TIGR02688 conserved hypothetic 96.1 0.048 1E-06 48.2 9.1 51 33-83 171-228 (449)
345 TIGR00959 ffh signal recogniti 96.1 0.12 2.6E-06 46.4 11.8 22 66-87 101-122 (428)
346 PRK14721 flhF flagellar biosyn 96.1 0.052 1.1E-06 48.4 9.4 131 64-226 191-323 (420)
347 PRK14959 DNA polymerase III su 96.1 0.073 1.6E-06 49.8 10.7 19 65-83 39-57 (624)
348 PRK05580 primosome assembly pr 96.0 0.053 1.2E-06 52.0 10.1 78 254-331 171-250 (679)
349 TIGR00595 priA primosomal prot 96.0 0.035 7.7E-07 51.1 8.5 76 256-331 8-85 (505)
350 PRK05896 DNA polymerase III su 96.0 0.029 6.4E-07 52.1 7.9 19 65-83 39-57 (605)
351 COG2804 PulE Type II secretory 96.0 0.012 2.6E-07 52.7 5.1 41 51-92 243-285 (500)
352 PRK10867 signal recognition pa 96.0 0.1 2.2E-06 46.8 11.0 21 66-86 102-122 (433)
353 PF00265 TK: Thymidine kinase; 96.0 0.02 4.4E-07 44.6 5.9 36 67-110 4-39 (176)
354 PRK14957 DNA polymerase III su 96.0 0.06 1.3E-06 49.8 9.7 39 173-212 118-156 (546)
355 TIGR02928 orc1/cdc6 family rep 96.0 0.02 4.4E-07 50.6 6.6 24 65-89 41-64 (365)
356 COG0630 VirB11 Type IV secreto 96.0 0.33 7.1E-06 41.8 13.7 55 49-112 127-182 (312)
357 PRK08451 DNA polymerase III su 96.0 0.049 1.1E-06 50.1 9.1 39 173-212 116-154 (535)
358 cd03115 SRP The signal recogni 96.0 0.21 4.6E-06 38.9 11.7 17 67-83 3-19 (173)
359 COG0593 DnaA ATPase involved i 96.0 0.085 1.8E-06 46.6 10.1 46 174-219 175-222 (408)
360 PRK14954 DNA polymerase III su 96.0 0.072 1.6E-06 50.2 10.3 19 65-83 39-57 (620)
361 PF05876 Terminase_GpA: Phage 96.0 0.016 3.4E-07 54.1 5.9 68 49-123 16-86 (557)
362 KOG0739 AAA+-type ATPase [Post 95.9 0.11 2.5E-06 43.3 10.0 46 65-122 167-212 (439)
363 KOG2028 ATPase related to the 95.9 0.036 7.9E-07 47.5 7.2 16 65-80 163-178 (554)
364 TIGR02525 plasmid_TraJ plasmid 95.9 0.028 6.1E-07 49.3 6.9 28 63-91 148-175 (372)
365 PRK06964 DNA polymerase III su 95.9 0.067 1.5E-06 46.4 9.1 41 50-91 2-47 (342)
366 PRK09376 rho transcription ter 95.9 0.035 7.5E-07 48.6 7.3 87 1-90 81-194 (416)
367 PRK06871 DNA polymerase III su 95.9 0.1 2.3E-06 44.9 10.1 34 50-83 3-43 (325)
368 KOG0738 AAA+-type ATPase [Post 95.8 0.042 9.2E-07 47.5 7.5 40 65-116 246-285 (491)
369 smart00492 HELICc3 helicase su 95.8 0.031 6.8E-07 41.8 6.0 57 284-340 3-66 (141)
370 TIGR02880 cbbX_cfxQ probable R 95.8 0.056 1.2E-06 45.9 8.3 19 64-82 58-76 (284)
371 TIGR00678 holB DNA polymerase 95.8 0.12 2.7E-06 40.8 9.8 25 65-90 15-39 (188)
372 TIGR00643 recG ATP-dependent D 95.8 0.046 9.9E-07 52.1 8.5 88 253-340 264-357 (630)
373 COG1618 Predicted nucleotide k 95.8 0.072 1.6E-06 40.2 7.6 114 65-199 6-127 (179)
374 COG1474 CDC6 Cdc6-related prot 95.8 0.23 5.1E-06 43.7 12.1 26 65-91 43-68 (366)
375 PHA03372 DNA packaging termina 95.8 0.11 2.5E-06 47.7 10.2 128 63-214 201-336 (668)
376 COG1200 RecG RecG-like helicas 95.7 0.059 1.3E-06 50.1 8.4 86 256-341 295-385 (677)
377 PRK14950 DNA polymerase III su 95.7 0.15 3.3E-06 48.0 11.5 18 66-83 40-57 (585)
378 PRK14963 DNA polymerase III su 95.7 0.095 2.1E-06 48.2 9.8 23 67-90 39-61 (504)
379 PRK06620 hypothetical protein; 95.7 0.036 7.8E-07 44.9 6.3 16 65-80 45-60 (214)
380 PRK07993 DNA polymerase III su 95.7 0.077 1.7E-06 46.1 8.7 42 49-91 2-50 (334)
381 PRK00440 rfc replication facto 95.7 0.24 5.1E-06 42.9 11.9 38 174-212 102-139 (319)
382 PRK06090 DNA polymerase III su 95.6 0.11 2.3E-06 44.8 9.3 34 49-82 3-43 (319)
383 PRK14971 DNA polymerase III su 95.6 0.16 3.4E-06 48.1 11.1 41 172-214 119-159 (614)
384 PRK07471 DNA polymerase III su 95.6 0.13 2.9E-06 45.2 10.0 41 173-214 140-180 (365)
385 PRK13851 type IV secretion sys 95.6 0.022 4.7E-07 49.5 5.1 44 60-112 158-201 (344)
386 KOG2228 Origin recognition com 95.6 0.38 8.2E-06 41.1 12.0 70 160-229 123-197 (408)
387 TIGR02868 CydC thiol reductant 95.6 0.031 6.7E-07 52.2 6.5 19 61-79 358-376 (529)
388 PF03237 Terminase_6: Terminas 95.6 0.3 6.5E-06 43.2 12.6 146 68-230 1-154 (384)
389 PF03796 DnaB_C: DnaB-like hel 95.5 0.044 9.5E-07 45.9 6.6 116 63-189 18-145 (259)
390 PRK11034 clpA ATP-dependent Cl 95.5 0.2 4.4E-06 48.5 11.7 18 64-81 207-224 (758)
391 PF02456 Adeno_IVa2: Adenoviru 95.5 0.041 8.8E-07 46.0 6.1 41 67-113 90-130 (369)
392 PF01443 Viral_helicase1: Vira 95.5 0.019 4E-07 47.3 4.3 14 67-80 1-14 (234)
393 COG3267 ExeA Type II secretory 95.5 0.097 2.1E-06 42.7 8.0 47 61-116 47-94 (269)
394 COG1132 MdlB ABC-type multidru 95.5 0.041 8.9E-07 51.8 6.9 29 61-91 352-380 (567)
395 PRK10416 signal recognition pa 95.5 0.58 1.3E-05 40.4 13.2 45 173-217 195-246 (318)
396 COG0552 FtsY Signal recognitio 95.4 0.34 7.3E-06 41.4 11.3 124 67-218 142-272 (340)
397 PRK14948 DNA polymerase III su 95.4 0.11 2.5E-06 49.0 9.5 19 65-83 39-57 (620)
398 cd01128 rho_factor Transcripti 95.4 0.019 4.2E-07 47.4 4.0 21 60-80 12-32 (249)
399 PHA00012 I assembly protein 95.4 0.6 1.3E-05 39.9 12.6 25 67-91 4-28 (361)
400 PRK08699 DNA polymerase III su 95.4 0.2 4.3E-06 43.4 10.2 33 50-82 2-39 (325)
401 PF06733 DEAD_2: DEAD_2; Inte 95.4 0.0098 2.1E-07 46.5 2.1 44 145-188 114-159 (174)
402 TIGR00580 mfd transcription-re 95.4 0.073 1.6E-06 52.6 8.2 93 249-341 476-574 (926)
403 PRK04841 transcriptional regul 95.3 0.17 3.6E-06 50.7 11.0 42 174-215 121-162 (903)
404 TIGR00416 sms DNA repair prote 95.3 0.19 4.2E-06 45.6 10.3 91 64-188 94-184 (454)
405 PRK07940 DNA polymerase III su 95.3 0.059 1.3E-06 47.9 6.9 40 173-214 116-155 (394)
406 TIGR00767 rho transcription te 95.3 0.047 1E-06 48.0 6.1 28 61-89 165-192 (415)
407 COG2812 DnaX DNA polymerase II 95.3 0.026 5.7E-07 51.3 4.7 39 172-214 117-156 (515)
408 PRK07414 cob(I)yrinic acid a,c 95.3 0.1 2.2E-06 40.5 7.2 133 66-220 23-163 (178)
409 PRK06647 DNA polymerase III su 95.3 0.17 3.8E-06 47.2 10.1 18 66-83 40-57 (563)
410 TIGR02655 circ_KaiC circadian 95.3 0.26 5.6E-06 45.4 11.1 52 64-124 263-314 (484)
411 PRK07133 DNA polymerase III su 95.3 0.071 1.5E-06 50.7 7.5 18 66-83 42-59 (725)
412 COG1110 Reverse gyrase [DNA re 95.2 0.078 1.7E-06 51.5 7.7 62 271-332 124-191 (1187)
413 PRK06305 DNA polymerase III su 95.2 0.26 5.7E-06 44.8 10.9 19 65-83 40-58 (451)
414 TIGR03015 pepcterm_ATPase puta 95.2 0.44 9.5E-06 40.1 11.7 31 50-80 24-59 (269)
415 TIGR02639 ClpA ATP-dependent C 95.2 0.41 9E-06 46.6 12.8 17 65-81 204-220 (731)
416 TIGR02012 tigrfam_recA protein 95.2 0.058 1.3E-06 46.3 6.2 44 63-114 54-97 (321)
417 PRK09112 DNA polymerase III su 95.2 0.25 5.5E-06 43.3 10.3 41 173-214 140-180 (351)
418 PF03969 AFG1_ATPase: AFG1-lik 95.2 0.15 3.2E-06 44.8 8.8 45 174-219 127-172 (362)
419 smart00491 HELICc2 helicase su 95.2 0.052 1.1E-06 40.7 5.2 57 284-340 3-67 (142)
420 PRK13900 type IV secretion sys 95.2 0.033 7.2E-07 48.2 4.8 43 61-112 157-199 (332)
421 KOG0737 AAA+-type ATPase [Post 95.2 0.22 4.8E-06 42.9 9.4 52 29-80 91-143 (386)
422 TIGR03600 phage_DnaB phage rep 95.1 0.19 4.1E-06 45.5 9.7 116 62-188 192-319 (421)
423 TIGR02524 dot_icm_DotB Dot/Icm 95.1 0.08 1.7E-06 46.4 7.0 27 63-90 133-159 (358)
424 COG5008 PilU Tfp pilus assembl 95.1 0.023 5E-07 46.4 3.3 28 63-91 126-153 (375)
425 PRK08506 replicative DNA helic 95.1 0.21 4.5E-06 45.8 9.8 114 63-188 191-316 (472)
426 COG2909 MalT ATP-dependent tra 95.0 0.056 1.2E-06 51.5 6.1 41 175-215 130-170 (894)
427 PRK09354 recA recombinase A; P 95.0 0.069 1.5E-06 46.3 6.2 43 64-114 60-102 (349)
428 PRK06904 replicative DNA helic 95.0 0.48 1E-05 43.4 11.8 118 62-189 219-349 (472)
429 KOG0744 AAA+-type ATPase [Post 94.9 0.097 2.1E-06 44.2 6.5 48 65-117 178-227 (423)
430 PF03266 NTPase_1: NTPase; In 94.9 0.024 5.2E-07 43.9 2.8 25 66-91 1-25 (168)
431 cd01129 PulE-GspE PulE/GspE Th 94.9 0.073 1.6E-06 44.6 5.9 44 42-89 59-104 (264)
432 PRK10436 hypothetical protein; 94.8 0.059 1.3E-06 48.9 5.6 39 51-90 203-243 (462)
433 COG2255 RuvB Holliday junction 94.8 0.086 1.9E-06 43.7 5.9 18 65-82 53-70 (332)
434 TIGR00635 ruvB Holliday juncti 94.8 0.066 1.4E-06 46.1 5.7 17 65-81 31-47 (305)
435 CHL00095 clpC Clp protease ATP 94.8 0.4 8.6E-06 47.4 11.5 18 65-82 201-218 (821)
436 TIGR02397 dnaX_nterm DNA polym 94.7 0.2 4.3E-06 44.1 8.7 25 65-90 37-61 (355)
437 PRK13764 ATPase; Provisional 94.7 0.078 1.7E-06 49.5 6.1 27 63-90 256-282 (602)
438 PRK14953 DNA polymerase III su 94.7 0.15 3.2E-06 46.8 7.8 17 67-83 41-57 (486)
439 TIGR03346 chaperone_ClpB ATP-d 94.7 0.36 7.7E-06 47.9 10.9 17 65-81 195-211 (852)
440 TIGR02533 type_II_gspE general 94.6 0.071 1.5E-06 48.8 5.7 39 51-90 227-267 (486)
441 KOG0734 AAA+-type ATPase conta 94.6 0.24 5.2E-06 44.9 8.4 16 65-80 338-353 (752)
442 TIGR02640 gas_vesic_GvpN gas v 94.5 0.077 1.7E-06 44.5 5.1 27 56-82 13-39 (262)
443 TIGR00665 DnaB replicative DNA 94.4 0.34 7.5E-06 44.0 9.6 113 63-187 194-318 (434)
444 PRK10865 protein disaggregatio 94.4 0.41 8.8E-06 47.4 10.6 17 65-81 200-216 (857)
445 KOG0058 Peptide exporter, ABC 94.4 0.14 3E-06 48.0 6.9 139 60-209 490-657 (716)
446 PRK08840 replicative DNA helic 94.4 0.72 1.6E-05 42.1 11.4 117 61-187 214-342 (464)
447 COG0210 UvrD Superfamily I DNA 94.4 0.12 2.6E-06 49.7 6.9 71 49-125 2-72 (655)
448 KOG1807 Helicases [Replication 94.3 0.21 4.5E-06 47.1 7.8 72 49-122 378-449 (1025)
449 PRK04328 hypothetical protein; 94.3 0.084 1.8E-06 43.9 5.1 53 63-124 22-74 (249)
450 cd01126 TraG_VirD4 The TraG/Tr 94.3 0.067 1.5E-06 47.7 4.7 47 66-122 1-47 (384)
451 KOG0741 AAA+-type ATPase [Post 94.3 0.27 5.8E-06 44.5 8.1 52 32-83 494-557 (744)
452 PRK07004 replicative DNA helic 94.3 0.4 8.7E-06 43.8 9.6 114 63-187 212-337 (460)
453 PF00437 T2SE: Type II/IV secr 94.2 0.047 1E-06 46.0 3.5 43 62-112 125-167 (270)
454 PHA00350 putative assembly pro 94.2 0.67 1.5E-05 41.1 10.5 25 67-91 4-29 (399)
455 PF01637 Arch_ATPase: Archaeal 94.2 0.25 5.5E-06 40.3 7.7 25 64-89 20-44 (234)
456 TIGR03878 thermo_KaiC_2 KaiC d 94.2 0.14 3.1E-06 42.8 6.2 38 63-108 35-72 (259)
457 TIGR03345 VI_ClpV1 type VI sec 94.1 0.9 2E-05 44.9 12.3 28 54-81 192-225 (852)
458 PF12846 AAA_10: AAA-like doma 94.1 0.066 1.4E-06 45.8 4.2 40 65-112 2-41 (304)
459 PRK13897 type IV secretion sys 94.1 0.13 2.8E-06 48.3 6.3 58 65-136 159-216 (606)
460 PF02534 T4SS-DNA_transf: Type 94.1 0.095 2.1E-06 48.1 5.3 49 65-123 45-93 (469)
461 TIGR00614 recQ_fam ATP-depende 94.0 0.34 7.4E-06 44.5 8.8 60 271-330 50-109 (470)
462 TIGR02858 spore_III_AA stage I 94.0 0.43 9.2E-06 40.1 8.6 16 65-80 112-127 (270)
463 cd01130 VirB11-like_ATPase Typ 94.0 0.087 1.9E-06 41.6 4.3 32 49-80 9-41 (186)
464 TIGR03819 heli_sec_ATPase heli 94.0 0.18 3.9E-06 43.9 6.6 63 39-112 154-217 (340)
465 COG1219 ClpX ATP-dependent pro 94.0 0.042 9.1E-07 46.2 2.5 17 65-81 98-114 (408)
466 TIGR02538 type_IV_pilB type IV 94.0 0.11 2.4E-06 48.7 5.6 45 42-90 295-341 (564)
467 cd01131 PilT Pilus retraction 93.9 0.092 2E-06 42.0 4.4 23 67-90 4-26 (198)
468 PRK05800 cobU adenosylcobinami 93.9 0.2 4.4E-06 38.8 6.1 46 66-122 3-48 (170)
469 COG0467 RAD55 RecA-superfamily 93.8 0.11 2.3E-06 43.6 4.8 57 62-127 21-77 (260)
470 PRK10689 transcription-repair 93.8 0.31 6.6E-06 49.6 8.6 71 270-340 647-722 (1147)
471 TIGR01243 CDC48 AAA family ATP 93.8 0.41 8.8E-06 46.7 9.3 17 64-80 487-503 (733)
472 PRK08058 DNA polymerase III su 93.8 1.1 2.5E-05 38.9 11.2 39 173-212 109-147 (329)
473 PRK08006 replicative DNA helic 93.8 1 2.2E-05 41.2 11.2 115 63-187 223-349 (471)
474 PRK07399 DNA polymerase III su 93.7 0.6 1.3E-05 40.3 9.2 53 159-214 110-162 (314)
475 cd03239 ABC_SMC_head The struc 93.7 0.16 3.5E-06 39.8 5.2 42 173-214 115-157 (178)
476 COG1197 Mfd Transcription-repa 93.7 0.34 7.4E-06 48.1 8.3 77 265-341 636-717 (1139)
477 PRK08760 replicative DNA helic 93.6 0.61 1.3E-05 42.8 9.5 113 63-187 228-352 (476)
478 TIGR01243 CDC48 AAA family ATP 93.6 0.55 1.2E-05 45.8 9.7 18 63-80 211-228 (733)
479 PHA02535 P terminase ATPase su 93.5 0.71 1.5E-05 42.8 9.7 86 33-125 122-207 (581)
480 PF05729 NACHT: NACHT domain 93.5 0.35 7.5E-06 37.0 6.9 25 66-91 2-26 (166)
481 PRK13695 putative NTPase; Prov 93.5 2.3 5E-05 33.1 11.5 17 66-82 2-18 (174)
482 TIGR03880 KaiC_arch_3 KaiC dom 93.4 0.2 4.4E-06 40.9 5.7 53 63-124 15-67 (224)
483 PRK12608 transcription termina 93.4 0.18 3.9E-06 44.1 5.4 38 53-91 119-159 (380)
484 PRK05595 replicative DNA helic 93.4 0.69 1.5E-05 42.1 9.5 49 64-120 201-249 (444)
485 PRK14701 reverse gyrase; Provi 93.3 0.25 5.4E-06 51.9 7.2 61 271-331 121-187 (1638)
486 COG1074 RecB ATP-dependent exo 93.3 0.18 3.8E-06 51.5 6.0 58 62-122 14-71 (1139)
487 TIGR00763 lon ATP-dependent pr 93.3 0.48 1E-05 46.4 8.8 18 64-81 347-364 (775)
488 cd01125 repA Hexameric Replica 93.3 1 2.2E-05 37.1 9.7 43 66-108 3-49 (239)
489 COG0541 Ffh Signal recognition 93.2 0.91 2E-05 40.3 9.4 130 67-225 103-234 (451)
490 TIGR01420 pilT_fam pilus retra 93.2 0.16 3.5E-06 44.4 5.0 43 63-112 121-163 (343)
491 CHL00176 ftsH cell division pr 93.2 0.7 1.5E-05 44.0 9.4 17 65-81 217-233 (638)
492 PRK11176 lipid transporter ATP 93.2 0.22 4.8E-06 47.2 6.2 42 173-214 497-538 (582)
493 KOG1806 DEAD box containing he 93.1 0.14 3E-06 49.7 4.6 70 48-123 737-806 (1320)
494 COG1066 Sms Predicted ATP-depe 93.0 2 4.3E-05 38.0 11.1 95 57-189 81-183 (456)
495 PRK05636 replicative DNA helic 93.0 0.68 1.5E-05 42.7 8.9 19 64-82 265-283 (505)
496 TIGR01241 FtsH_fam ATP-depende 93.0 0.8 1.7E-05 42.4 9.4 17 64-80 88-104 (495)
497 PF02367 UPF0079: Uncharacteri 93.0 0.11 2.3E-06 37.8 3.0 45 58-113 9-53 (123)
498 KOG0740 AAA+-type ATPase [Post 93.0 0.48 1E-05 42.2 7.5 16 65-80 187-202 (428)
499 TIGR03375 type_I_sec_LssB type 92.9 0.24 5.2E-06 48.0 6.3 19 61-79 488-506 (694)
500 TIGR02788 VirB11 P-type DNA tr 92.9 0.19 4.1E-06 43.3 5.0 20 61-80 141-160 (308)
No 1
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2e-55 Score=400.30 Aligned_cols=342 Identities=64% Similarity=1.047 Sum_probs=305.2
Q ss_pred CChHHHHHhhhhcceee-eccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhh
Q 019359 1 MTETEVKMYRARREITV-EGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 79 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~ 79 (342)
|+++++..++.+..+.+ .|...|.|...|+++++++++.+.+...||..|+++|.++|+.+++|+++++++|||+|||+
T Consensus 103 ~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTl 182 (545)
T PTZ00110 103 LSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTL 182 (545)
T ss_pred CCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHH
Confidence 57788999999998886 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChH
Q 019359 80 SYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 159 (342)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~ 159 (342)
+|+++++.++...+....+.++.+|||+|+++|+.|+.+.+++|+...++.+..++|+.+...+...+..+++|+|+||+
T Consensus 183 aylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPg 262 (545)
T PTZ00110 183 AFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPG 262 (545)
T ss_pred HHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHH
Confidence 99999988876544333345789999999999999999999999988899999999998888888888888999999999
Q ss_pred HHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcC-CCeEEEeccc
Q 019359 160 RLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLR-NPYKVIIGSL 238 (342)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~ 238 (342)
+|.+++......+..++++|+||||++++.+|...+..++..+++..|++++|||++..+..+...++. .+..+.+...
T Consensus 263 rL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~ 342 (545)
T PTZ00110 263 RLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL 342 (545)
T ss_pred HHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC
Confidence 999999888888899999999999999999999999999999989999999999999998888888775 4665555443
Q ss_pred ccccccccceEEEEechhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHH
Q 019359 239 ELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAE 317 (342)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 317 (342)
.......+...+.......+...+..++.... .++++||||++++.++.+++.|...++++..+||++++.+|..+++.
T Consensus 343 ~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~ 422 (545)
T PTZ00110 343 DLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNE 422 (545)
T ss_pred ccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHH
Confidence 33334455566666677778888888888765 57899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEEecccccCCCCCCCC
Q 019359 318 FRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 318 f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|++|+.+|||||+++++|||+|+|+
T Consensus 423 F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 423 FKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HhcCCCcEEEEcchhhcCCCcccCC
Confidence 9999999999999999999999985
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-56 Score=385.73 Aligned_cols=315 Identities=64% Similarity=1.067 Sum_probs=294.1
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhc-CCCccCCCCceEEEE
Q 019359 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSA-QPRLVQGEGPIVLVL 106 (342)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~~~~~vlil 106 (342)
.|+.+++++....++...||..|+|+|.+.|+.++.|++++..+.||+|||++|++|++.++.. ......+.++++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 4555666777777888999999999999999999999999999999999999999999999987 456666679999999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh
Q 019359 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (342)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (342)
+|||+|+.|+.+.+..|+...++++.+++||.+...+...+.++.+|+|+||+++.++++....+++.+.++|+|||++|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHhhc-CCCccEEEEEeecCchHHHHHHHhcCCCeEEEeccc-ccccccccceEEEEechhhHHHHHHH
Q 019359 187 LDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSL-ELKANQSINQVVEVVTEAEKYNRLIK 264 (342)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (342)
++.+|.+.++.++..+ ++..|.+++|||++..++.+...++.++..+.+... .......+.+.....+...+...+..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 556689999999999999999999999999988755 56677888888888899999999999
Q ss_pred HHHhhc--CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 265 LLKEVM--DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 265 ~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
++.... .++|+||||++++.|+.++..|++.++++..+||+.++.+|+.+++.|++|+..|||||+++++|+|+|+|+
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 999886 367999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1e-52 Score=381.69 Aligned_cols=340 Identities=34% Similarity=0.573 Sum_probs=297.2
Q ss_pred CChHHHHHhhhhcceeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
|+++++..++...++.+.|..+|.|...|+.+++++.+.+.+...||..|+|+|.++++.++.|+++++.+|||+|||++
T Consensus 95 ~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTla 174 (518)
T PLN00206 95 LSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTAS 174 (518)
T ss_pred CCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCC--ccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeCh
Q 019359 81 YLLPAFVHVSAQPR--LVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATP 158 (342)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~ 158 (342)
|+++++.++..... .....++++||++|+++|+.|+.+.++.+....++....+.||.....+...+..+++|+|+||
T Consensus 175 yllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TP 254 (518)
T PLN00206 175 FLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTP 254 (518)
T ss_pred HHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECH
Confidence 99999987753211 1112478999999999999999999999988888898999999888777777888899999999
Q ss_pred HHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEeccc
Q 019359 159 GRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSL 238 (342)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
++|.+++......+..++++|+||||.+++.+|...+..+...++ ..|++++|||++..++.+...+..++..+.....
T Consensus 255 grL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~ 333 (518)
T PLN00206 255 GRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP 333 (518)
T ss_pred HHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999988888889999999999999999999999988888774 6899999999999999998888888877766543
Q ss_pred ccccccccceEEEEechhhHHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHh-CCCCcEeecCCCCHHHHHHHHH
Q 019359 239 ELKANQSINQVVEVVTEAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRM-DGWPALSIHGDKNQSERDWVLA 316 (342)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~ 316 (342)
. .....+...........+...+.+.+..... ..++||||+++..++.+++.|.. .++++..+||+++..+|..+++
T Consensus 334 ~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~ 412 (518)
T PLN00206 334 N-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMK 412 (518)
T ss_pred C-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHH
Confidence 3 2333344555555666677777777765433 46899999999999999999975 5889999999999999999999
Q ss_pred HHhcCCCCEEEEecccccCCCCCCCC
Q 019359 317 EFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 317 ~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.|++|+.+|||||+++++|||+|+|+
T Consensus 413 ~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 413 SFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHHCCCCCEEEEecHhhccCCcccCC
Confidence 99999999999999999999999985
No 4
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.3e-53 Score=356.02 Aligned_cols=340 Identities=47% Similarity=0.752 Sum_probs=316.0
Q ss_pred CChHHHHHhhhhcceeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
|++.+|+-|++.+.+.+.|...|+|.+.|++.++|..+++.+...|+..|+|+|..+++..+..+++|..+.||||||.+
T Consensus 219 m~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaa 298 (673)
T KOG0333|consen 219 MTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAA 298 (673)
T ss_pred cCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCc----cCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEe
Q 019359 81 YLLPAFVHVSAQPRL----VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIA 156 (342)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 156 (342)
|+++++..+...+.. +...++++++++|+++|++|+.++-.+|+..+++.++.+.||.+..++--.+..+++|+|+
T Consensus 299 f~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceivia 378 (673)
T KOG0333|consen 299 FLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIA 378 (673)
T ss_pred chhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeec
Confidence 999999888776522 3345899999999999999999999999999999999999999888887778889999999
Q ss_pred ChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCC-------------------------ccEEEE
Q 019359 157 TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD-------------------------RQTLYW 211 (342)
Q Consensus 157 T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~-------------------------~~~i~~ 211 (342)
||+.|.+.+.+..+.+..+.++|+|||+++.+.+|.+.+..++..++.. .|.+++
T Consensus 379 tPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mf 458 (673)
T KOG0333|consen 379 TPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMF 458 (673)
T ss_pred CchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEE
Confidence 9999999999988888999999999999999999999999998888631 588999
Q ss_pred EeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHH
Q 019359 212 SATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQ 291 (342)
Q Consensus 212 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~ 291 (342)
|||+++.++.+++.++..|..+++.... ...+.+.+.++.....++...|.+++++. ...++|||+|+++.|+.+++.
T Consensus 459 tatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~ 536 (673)
T KOG0333|consen 459 TATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKI 536 (673)
T ss_pred ecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHH
Confidence 9999999999999999999999998765 55667778888888888899999999886 568899999999999999999
Q ss_pred HHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 292 LRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 292 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|.+.|+++..+||+-++++|+.++..|++|..+|||||+++++|||+|+|+
T Consensus 537 LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVS 587 (673)
T KOG0333|consen 537 LEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVS 587 (673)
T ss_pred HhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccc
Confidence 999999999999999999999999999999999999999999999999985
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-52 Score=341.48 Aligned_cols=313 Identities=38% Similarity=0.566 Sum_probs=290.3
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
......|.++++.+.+.++....|+..|+++|+++++..+.|++++..+.||||||.+|++|+++++.++++ .++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~ 131 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFF 131 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----Cce
Confidence 455667889999999999999999999999999999999999999999999999999999999999999775 689
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHh-ccccCCCCccEEEEe
Q 019359 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLE-AQHTNLRRVTYLVLD 181 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~-~~~~~~~~~~~iIvD 181 (342)
++|++|+++|+.|+.+.++.++...|+.+..+.||.+...+...+.+.++|+|+||++|++++. .+.+.+..+.++|+|
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 566678899999999
Q ss_pred ccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHH
Q 019359 182 EADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNR 261 (342)
Q Consensus 182 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (342)
||+++++.+|...+..+++.++..+|.+++|||++..+.++....+..|..+.+...+ ...+.+.+.+-..+...+...
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~y 290 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTY 290 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchh
Confidence 9999999999999999999999999999999999999999998889999988877654 445556667777788888888
Q ss_pred HHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
|++++.+. .++.+||||++...+..++-.|...|+.+.-+||.|++..|...++.|++|..+||+||+++++|+|+|.|
T Consensus 291 LV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~V 369 (476)
T KOG0330|consen 291 LVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHV 369 (476)
T ss_pred HHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCc
Confidence 88888765 57899999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 019359 342 C 342 (342)
Q Consensus 342 ~ 342 (342)
.
T Consensus 370 d 370 (476)
T KOG0330|consen 370 D 370 (476)
T ss_pred e
Confidence 4
No 6
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-52 Score=325.70 Aligned_cols=322 Identities=34% Similarity=0.551 Sum_probs=298.3
Q ss_pred eeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCC
Q 019359 15 ITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPR 94 (342)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~ 94 (342)
...+...-..+...|+++++.+.+.+++.+.||..|+..|++++..+++|+++++++..|+|||.+|.+.++..+....+
T Consensus 15 ~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r 94 (400)
T KOG0328|consen 15 VEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVR 94 (400)
T ss_pred eeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccc
Confidence 44455666788899999999999999999999999999999999999999999999999999999998888877665543
Q ss_pred ccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCC
Q 019359 95 LVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRR 174 (342)
Q Consensus 95 ~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 174 (342)
..++||++|+++|+.|+.+.+..++...++.+..+.||.+..+.++.+..+.+++.+||+++++.+....+.-..
T Consensus 95 -----~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~ 169 (400)
T KOG0328|consen 95 -----ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRA 169 (400)
T ss_pred -----eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccc
Confidence 457999999999999999999999999999999999999999999988899999999999999999998888888
Q ss_pred ccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEec
Q 019359 175 VTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT 254 (342)
Q Consensus 175 ~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
+.++|+||++.+++.+|..++..++.+++++.|++++|||++.++......+..+|..+.+.+++.........++....
T Consensus 170 vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~ 249 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEK 249 (400)
T ss_pred eeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeech
Confidence 99999999999999999999999999999999999999999999999999999999999999988777777777777777
Q ss_pred hhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEeccccc
Q 019359 255 EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAAR 334 (342)
Q Consensus 255 ~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 334 (342)
++.+...|+++.... .-.+++||||++..++.+.+.+++.++.+...||+|++++|+.++..|+.|+-+||++|++-++
T Consensus 250 EewKfdtLcdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaR 328 (400)
T KOG0328|consen 250 EEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWAR 328 (400)
T ss_pred hhhhHhHHHHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhc
Confidence 788999999988765 4467999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 019359 335 GLGRITVC 342 (342)
Q Consensus 335 Gidip~v~ 342 (342)
|+|+|.|+
T Consensus 329 GiDv~qVs 336 (400)
T KOG0328|consen 329 GIDVQQVS 336 (400)
T ss_pred cCCcceeE
Confidence 99999885
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-51 Score=368.39 Aligned_cols=312 Identities=43% Similarity=0.700 Sum_probs=283.2
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce-EE
Q 019359 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI-VL 104 (342)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~-vl 104 (342)
...|+++++++.+.+++.+.||..|+|+|..+++.++.|++++..++||+|||.+|++|+++.+..... .... +|
T Consensus 28 ~~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~----~~~~~aL 103 (513)
T COG0513 28 PPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE----RKYVSAL 103 (513)
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc----cCCCceE
Confidence 377999999999999999999999999999999999999999999999999999999999999764211 0112 99
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEecc
Q 019359 105 VLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEA 183 (342)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~ 183 (342)
|++||++|+.|+.+.+..++... ++.+..++||.+...+...+..+.+|+|+||+++++++....+++..+.++|+|||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 99999999999999999999888 79999999999999998888888999999999999999999889999999999999
Q ss_pred chhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEeccccc-ccccccceEEEEechhh-HHHH
Q 019359 184 DRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLEL-KANQSINQVVEVVTEAE-KYNR 261 (342)
Q Consensus 184 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~ 261 (342)
++|++.+|.+.+..+...++.+.|.+++|||++..+..+...++.+|..+.+..... .....+.+++....... +...
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877774332 25566777777777655 8888
Q ss_pred HHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
|..++... ..+++||||++++.++.++..|...|+++..+||++++.+|...++.|++|+.+|||||+++++|||+|+|
T Consensus 264 L~~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 264 LLKLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 88887765 44579999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 019359 342 C 342 (342)
Q Consensus 342 ~ 342 (342)
+
T Consensus 343 ~ 343 (513)
T COG0513 343 S 343 (513)
T ss_pred c
Confidence 4
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-50 Score=362.17 Aligned_cols=318 Identities=36% Similarity=0.537 Sum_probs=275.4
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCcc--CCCC
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV--QGEG 100 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~--~~~~ 100 (342)
+-+...|+++++++.+.+++..+||..|+++|.++++.++.|+|++++||||+|||++|+++++..+...+... ...+
T Consensus 4 ~~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 4 HLTEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred cCCCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 44557899999999999999999999999999999999999999999999999999999999998886543211 1135
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEE
Q 019359 101 PIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (342)
Q Consensus 101 ~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (342)
+++||++|+++|+.|+.+.+..+....++.+..+.|+.........+..+++|+|+||+++.+++......+..++++|+
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 78999999999999999999999888899999999998877777777778999999999999999888888899999999
Q ss_pred eccchhhcCCChHHHHHHHhhcCC--CccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhH
Q 019359 181 DEADRMLDMGFEPQIRKIVTQIRP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEK 258 (342)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (342)
||||.+++.+|...+..+...++. ..+.+++|||++.....+....+.+|..+.+..... ....+...+.......+
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~-~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK-TGHRIKEELFYPSNEEK 242 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc-CCCceeEEEEeCCHHHH
Confidence 999999999999999998888864 456789999999988888888888888777654432 22333444445556677
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCC
Q 019359 259 YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGR 338 (342)
Q Consensus 259 ~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidi 338 (342)
...+..++... ..+++||||++++.++.+++.|.+.|+++..+||++++++|..+++.|++|+++|||||+++++|||+
T Consensus 243 ~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 243 MRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 77777777653 46789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 019359 339 ITVC 342 (342)
Q Consensus 339 p~v~ 342 (342)
|+|+
T Consensus 322 p~v~ 325 (423)
T PRK04837 322 PAVT 325 (423)
T ss_pred cccC
Confidence 9985
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.3e-50 Score=362.20 Aligned_cols=313 Identities=38% Similarity=0.637 Sum_probs=271.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccC-CCCceEEEE
Q 019359 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQ-GEGPIVLVL 106 (342)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~-~~~~~vlil 106 (342)
.|+++++++++.+.+.+.||..|+++|.++++.++.++|+++++|||+|||++|+++++..+........ ....++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999998865432111 123589999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh
Q 019359 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (342)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (342)
+|+++|+.|+.+.++.+....++.+..+.|+.+...+...+...++|+|+||++|++++......+..++++|+||||.+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888899999999998887777777778999999999999998887778899999999999999
Q ss_pred hcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHH
Q 019359 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLL 266 (342)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 266 (342)
++.++...+..++..++...|.+++|||++.....+...++.++..+.+.... .....+...+.......+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999998889999999999998888888888888777665432 22233444555555555555555555
Q ss_pred HhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 267 KEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 267 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.. ...+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|+
T Consensus 241 ~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~ 315 (456)
T PRK10590 241 GK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELP 315 (456)
T ss_pred Hc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCC
Confidence 43 2457899999999999999999999999999999999999999999999999999999999999999999974
No 10
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.7e-50 Score=363.28 Aligned_cols=309 Identities=39% Similarity=0.604 Sum_probs=276.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
+..|+.+++++.+.+.+...||..|+|+|.++++.++.|+++++++|||+|||++|+++++..+..... +.++||
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~-----~~~~li 77 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRF-----RVQALV 77 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccC-----CceEEE
Confidence 356999999999999999999999999999999999999999999999999999999999998764321 557999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccc
Q 019359 106 LAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (342)
++|+++|+.|+.+.++.+.... ++.+..++|+.+...+...+..+.+|+|+||+++.+++.+....+..++++|+||||
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 9999999999999999886643 788999999998888888888889999999999999998888888899999999999
Q ss_pred hhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHH
Q 019359 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIK 264 (342)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (342)
.+++.+|...+..++..++...|++++|||++.....+...++.++..+.+.... ....+...+.......+...+..
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887775543 23335556666666678888888
Q ss_pred HHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 265 ~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
++... ..+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 236 ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~ 312 (460)
T PRK11776 236 LLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALE 312 (460)
T ss_pred HHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCC
Confidence 77654 467899999999999999999999999999999999999999999999999999999999999999999874
No 11
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.6e-49 Score=356.27 Aligned_cols=312 Identities=35% Similarity=0.536 Sum_probs=270.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc
Q 019359 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (342)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 107 (342)
.|+++++++.+.+.+...||..|+++|.++++.++.++++++.+|||+|||++|+++++.++...+... ....++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~-~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRK-SGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccC-CCCceEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999998886543221 2256899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 108 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
|+++|+.|+.+.+..++...++.+..+.|+.........+..+++|+|+||++|.+++......+..+++||+||||.++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999888999999999988877777777788999999999999998888888899999999999999
Q ss_pred cCCChHHHHHHHhhcCCCccEEEEEeecCc-hHHHHHHHhcCCCeEEEecccccccccccceEEEEec-hhhHHHHHHHH
Q 019359 188 DMGFEPQIRKIVTQIRPDRQTLYWSATWPR-EVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT-EAEKYNRLIKL 265 (342)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 265 (342)
+.++...+..+....+...|.+++|||++. .+..+...++.++..+...... .....+..++.... ...+...+..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 999999999998888888999999999974 4677777788888777665433 22333444444444 35566666666
Q ss_pred HHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 266 LKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 266 l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+.. ...+++||||+++++++.++..|++.++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|+
T Consensus 240 ~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 240 LKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred Hhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 654 2467899999999999999999999999999999999999999999999999999999999999999999985
No 12
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-50 Score=340.52 Aligned_cols=342 Identities=46% Similarity=0.760 Sum_probs=321.9
Q ss_pred CChHHHHHhhhhcceeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
|++.+.-.++...++.+.|-..|.|...|+.++++..+..+....-|.+++|.|.++++..+.|++++=.|-||+|||.+
T Consensus 197 l~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaA 276 (731)
T KOG0339|consen 197 LTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAA 276 (731)
T ss_pred cccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhH
Confidence 34556777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHH
Q 019359 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 160 (342)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~ 160 (342)
|+.+++.++...+....++++..+|+||+++|+.|+..++++|+...++++++++||.+..++...+..++.+|||||++
T Consensus 277 fi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgR 356 (731)
T KOG0339|consen 277 FIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGR 356 (731)
T ss_pred HHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHH
Confidence 99999999999888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEeccccc
Q 019359 161 LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLEL 240 (342)
Q Consensus 161 l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (342)
|.+++.-+..++..++++|+||+++|.+.+|.+.++.|.....+++|.+++|||+...++.+++.++.+|..+.......
T Consensus 357 lid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vge 436 (731)
T KOG0339|consen 357 LIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGE 436 (731)
T ss_pred HHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876554
Q ss_pred ccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhc
Q 019359 241 KANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 320 (342)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (342)
.....-+......+.+.+.++|+..|-.....+++|+|+.-+..++.++..|+-+++++..+||++.+.+|...+.+|+.
T Consensus 437 an~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk 516 (731)
T KOG0339|consen 437 ANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK 516 (731)
T ss_pred cccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh
Confidence 44445555666677789999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccCCCCCCCC
Q 019359 321 GRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 321 ~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+..+||++|++.++|+|||+++
T Consensus 517 k~~~VlvatDvaargldI~~ik 538 (731)
T KOG0339|consen 517 KRKPVLVATDVAARGLDIPSIK 538 (731)
T ss_pred cCCceEEEeeHhhcCCCccccc
Confidence 9999999999999999999864
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-49 Score=363.64 Aligned_cols=314 Identities=38% Similarity=0.589 Sum_probs=271.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCcc--CCCCceEE
Q 019359 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV--QGEGPIVL 104 (342)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~--~~~~~~vl 104 (342)
..|+++++++.+.++|...||..|+++|.++++.++.|+|+++++|||+|||++|+++++.++....... ...++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999998876532111 11257899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcc-ccCCCCccEEEEecc
Q 019359 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDEA 183 (342)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE~ 183 (342)
|++|+++|+.|+.+.+.+++...++.+..++|+.....+...+..+++|+|+||++|++++... ...+..++++|+|||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999988899999999998887777777778899999999999988765 356778999999999
Q ss_pred chhhcCCChHHHHHHHhhcCC--CccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHH
Q 019359 184 DRMLDMGFEPQIRKIVTQIRP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNR 261 (342)
Q Consensus 184 h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (342)
|.+++.+|...+..++..++. ..|++++|||++..+..+...++..+..+...... .....+...+.......+...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHH
Confidence 999999999999999888875 67999999999998888888888887766554432 222334455555666677777
Q ss_pred HHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
+..++.. ..+.++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|||+|+|
T Consensus 248 L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 248 LLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 7776654 357889999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 019359 342 C 342 (342)
Q Consensus 342 ~ 342 (342)
+
T Consensus 327 ~ 327 (572)
T PRK04537 327 K 327 (572)
T ss_pred C
Confidence 5
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.9e-49 Score=364.12 Aligned_cols=309 Identities=38% Similarity=0.616 Sum_probs=273.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEE
Q 019359 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (342)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil 106 (342)
..|+++++++.+.+++..+||..|+|+|.++++.++.+++++++||||+|||.+|+++++..+.... .++++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~-----~~~~~LIL 80 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL-----KAPQILVL 80 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc-----CCCeEEEE
Confidence 4599999999999999999999999999999999999999999999999999999999988875432 25689999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 107 APTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
+|+++|+.|+.+.+..+.... ++.+..++|+.+...+...+..+++|+|+||+++.+++......+..++++|+||||.
T Consensus 81 ~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH
Confidence 999999999999999886554 7889999999888777777778899999999999999988888889999999999999
Q ss_pred hhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHH
Q 019359 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKL 265 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (342)
+++.+|...+..++..++...|.+++|||++.....+...++.++..+.+..... ....+...+.......+...+..+
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~-~~~~i~q~~~~v~~~~k~~~L~~~ 239 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALVRF 239 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc-cCCceEEEEEEechhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888777654432 233344555556666777778877
Q ss_pred HHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 266 LKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 266 l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+... ...++||||+++.+++.+++.|.+.++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|+
T Consensus 240 L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 240 LEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 7653 457899999999999999999999999999999999999999999999999999999999999999999874
No 15
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-49 Score=324.03 Aligned_cols=341 Identities=47% Similarity=0.811 Sum_probs=308.6
Q ss_pred CChHHHHHhhhhc-ceeee----c--cCCCcccccccc-CCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcC
Q 019359 1 MTETEVKMYRARR-EITVE----G--HDVPRPIRIFQE-ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAE 72 (342)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~----~--~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~ 72 (342)
||++++..++... .+... | ...|+|.-.|++ |...+++.+.+...||..|+|+|.++|+.++.|.+.+-.+.
T Consensus 186 ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQ 265 (629)
T KOG0336|consen 186 LSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQ 265 (629)
T ss_pred CCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEe
Confidence 7888998887665 44442 3 345788888998 57788999999999999999999999999999999999999
Q ss_pred CCCchhhHhHHHHHHhhhcCC-CccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCC
Q 019359 73 TGSGKTLSYLLPAFVHVSAQP-RLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGV 151 (342)
Q Consensus 73 tG~GKT~~~~~~~~~~~~~~~-~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
||+|||++++++.+.++...+ ...+..++.+|+++|+++|+.|+.-+..++ ...++...+++|+.+..++...+.++.
T Consensus 266 TgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgv 344 (629)
T KOG0336|consen 266 TGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGV 344 (629)
T ss_pred cCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCc
Confidence 999999999998877665442 223345789999999999999988877776 345889999999999999999999999
Q ss_pred cEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCe
Q 019359 152 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPY 231 (342)
Q Consensus 152 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 231 (342)
+++++||++|.++...+..++..+.++|+|||++|++++|...+++++-...+++|.++.|||.|+.+.++...++.+|.
T Consensus 345 eiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~ 424 (629)
T KOG0336|consen 345 EIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPM 424 (629)
T ss_pred eEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHH
Q 019359 232 KVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSER 311 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 311 (342)
.+.+...+......+.+.+....+.++...+..+++.+.+..|+||||.++..|+.+...|.-.|+....+||+-.+.+|
T Consensus 425 ~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~Dr 504 (629)
T KOG0336|consen 425 IVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDR 504 (629)
T ss_pred EEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhH
Confidence 99999888888888888888888899998888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 312 DWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 312 ~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+..++.|+.|+.+|||+|+++++|+|+|||.
T Consensus 505 E~al~~~ksG~vrILvaTDlaSRGlDv~DiT 535 (629)
T KOG0336|consen 505 EMALEDFKSGEVRILVATDLASRGLDVPDIT 535 (629)
T ss_pred HHHHHhhhcCceEEEEEechhhcCCCchhcc
Confidence 9999999999999999999999999999973
No 16
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-47 Score=341.92 Aligned_cols=310 Identities=33% Similarity=0.570 Sum_probs=265.5
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
...|+++++++.+.+++..+||..|+++|.++++.+..++++++.+|||+|||++|+++++..+.... .+.++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~-----~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL-----NACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC-----CCceEEE
Confidence 46699999999999999999999999999999999999999999999999999999999988775432 2678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
++|+++|+.|+.+.+..++...+..+..+.|+.........+..+.+|+|+||+++.+.+......+..++++|+||+|+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988888888888888877777777777789999999999998887777788999999999999
Q ss_pred hhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEec-hhhHHHHHHH
Q 019359 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT-EAEKYNRLIK 264 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 264 (342)
+.+.++...+..++..+++..|++++|||++.....+...+...+..+........ .......+.... ...+...+..
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELT-LEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcc-cCCceEEEEecChHHHHHHHHHH
Confidence 99988888888888888889999999999998888888888888877665543322 222333333333 3345555555
Q ss_pred HHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 265 ~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.+... ...++||||+++++++.+++.|.+.++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 261 ~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 261 LYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 55443 457899999999999999999999999999999999999999999999999999999999999999999874
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.9e-47 Score=343.57 Aligned_cols=315 Identities=37% Similarity=0.543 Sum_probs=268.7
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCcc--CCCCceE
Q 019359 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV--QGEGPIV 103 (342)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~--~~~~~~v 103 (342)
...|..+++++.+.+++.+.||..++++|.++++.+++|+|+++.+|||+|||++|+++++..+...+... ..+..++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 34588899999999999999999999999999999999999999999999999999999999886643211 1125689
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhc-CCCcEEEeChHHHHHHHhccccCCCCccEEEEec
Q 019359 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (342)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (342)
|||+|+++|+.|+.+.++.+....++.+..+.|+.........+. ..++|+|+||++|+.+.......+..+++|||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 999999999999999999998888999999999877666655553 4589999999999998888777888999999999
Q ss_pred cchhhcCCChHHHHHHHhhcCC--CccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHH
Q 019359 183 ADRMLDMGFEPQIRKIVTQIRP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (342)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (342)
+|.+.+.++...+..++..++. ..|++++|||++.....+...+..++..+.+..... ........+......++..
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-ASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC-CCCcccEEEEEecchhHHH
Confidence 9999999999889988887753 569999999999888888888888888776654432 2223344455555666776
Q ss_pred HHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 261 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 261 ~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
.+..++... ..+++||||+++++++.+++.|.+.++.+..+||+++..+|..+++.|++|+++|||||+++++|||+|+
T Consensus 325 ~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~ 403 (475)
T PRK01297 325 LLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDG 403 (475)
T ss_pred HHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccC
Confidence 777766553 4578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 019359 341 VC 342 (342)
Q Consensus 341 v~ 342 (342)
|+
T Consensus 404 v~ 405 (475)
T PRK01297 404 IS 405 (475)
T ss_pred CC
Confidence 85
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-47 Score=308.15 Aligned_cols=314 Identities=34% Similarity=0.475 Sum_probs=278.6
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
......|+.+|+++|+.+.+.++|...|+|.|..+++.|+.|++++=+|-||||||.+|.++++.++...+- +..
T Consensus 3 ~~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~-----giF 77 (442)
T KOG0340|consen 3 RKTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY-----GIF 77 (442)
T ss_pred ccccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC-----cce
Confidence 345678999999999999999999999999999999999999999999999999999999999999998874 889
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc----CCCCccEE
Q 019359 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT----NLRRVTYL 178 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~----~~~~~~~i 178 (342)
++|++||++|+-|..+.|...+...++++..+.||...-.+...+.+..+++|+||+++..++..+.. .++.+.++
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeE
Confidence 99999999999999999999999999999999999999888888999999999999999998887633 36788999
Q ss_pred EEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecc-cccccccccceEEEEechhh
Q 019359 179 VLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGS-LELKANQSINQVVEVVTEAE 257 (342)
Q Consensus 179 IvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 257 (342)
|+|||+.+++..|...+..+.+.++..+|.+++|||+.+....+...-...+..+.... +.........+.+...+...
T Consensus 158 VlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v 237 (442)
T KOG0340|consen 158 VLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV 237 (442)
T ss_pred EecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh
Confidence 99999999999999999999999999999999999998877666554444433333322 23344555666677777777
Q ss_pred HHHHHHHHHHhhcC--CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccC
Q 019359 258 KYNRLIKLLKEVMD--GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARG 335 (342)
Q Consensus 258 ~~~~l~~~l~~~~~--~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~G 335 (342)
+...+...++...+ .+.++||+++..+++.++-.|+..++++..+|+.|++++|...+.+|+.+..+|||||+++++|
T Consensus 238 kdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRG 317 (442)
T KOG0340|consen 238 KDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRG 317 (442)
T ss_pred hHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcC
Confidence 77777888877655 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 019359 336 LGRITV 341 (342)
Q Consensus 336 idip~v 341 (342)
+|||.|
T Consensus 318 LDIP~V 323 (442)
T KOG0340|consen 318 LDIPTV 323 (442)
T ss_pred CCCCce
Confidence 999987
No 19
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.8e-47 Score=319.43 Aligned_cols=320 Identities=35% Similarity=0.504 Sum_probs=286.2
Q ss_pred CCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCc
Q 019359 22 VPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGP 101 (342)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 101 (342)
.......|+...+++...+++..+||..+++.|...++.++.|+++++.|-||+|||++|+++++..+...+.... ++-
T Consensus 77 s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~ 155 (543)
T KOG0342|consen 77 SITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGT 155 (543)
T ss_pred chhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCe
Confidence 3455667899999999999999999999999999999999999999999999999999999999999887654433 477
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccC-CCCccEEE
Q 019359 102 IVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN-LRRVTYLV 179 (342)
Q Consensus 102 ~vlil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-~~~~~~iI 179 (342)
.++|++||++|+.|...+++++.... ++.+..+.||.+...+.+.+.++++++|+||++|.+++++.... ....+++|
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 89999999999999999999998887 89999999999999999999999999999999999999986553 45567999
Q ss_pred EeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCC-CeEEEecccc-cccccccceEEEEechhh
Q 019359 180 LDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRN-PYKVIIGSLE-LKANQSINQVVEVVTEAE 257 (342)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 257 (342)
+|||+++++.+|...+..+...++...|.+++|||.+..++++....+.. +.++.+.... ......+.+-+.+.+...
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 99999999999999999999999999999999999999999998877665 5555544332 233555677777777778
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCC
Q 019359 258 KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLG 337 (342)
Q Consensus 258 ~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid 337 (342)
+...+..+++++....|+||||+|......+++.|+...++|..+||+.++..|..+..+|...+-.|||||+++++|+|
T Consensus 316 ~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD 395 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLD 395 (543)
T ss_pred hHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCC
Confidence 88899999999877799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 019359 338 RITVC 342 (342)
Q Consensus 338 ip~v~ 342 (342)
+|+|.
T Consensus 396 ~P~V~ 400 (543)
T KOG0342|consen 396 IPDVD 400 (543)
T ss_pred CCCce
Confidence 99984
No 20
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-48 Score=324.09 Aligned_cols=311 Identities=35% Similarity=0.503 Sum_probs=278.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc
Q 019359 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (342)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 107 (342)
.|.+++|+.++.+++..+||..|+|+|...++..+-|++++.+|.||+|||.+|++|++.++.-.++.- ...+||||+
T Consensus 182 sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~--~~TRVLVL~ 259 (691)
T KOG0338|consen 182 SFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV--AATRVLVLV 259 (691)
T ss_pred hHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC--cceeEEEEe
Confidence 588899999999999999999999999999999899999999999999999999999999998776542 367999999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc-cccCCCCccEEEEeccchh
Q 019359 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYLVLDEADRM 186 (342)
Q Consensus 108 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIvDE~h~~ 186 (342)
||++|+.|.+...++++.+.++.++.+.||-+...+-..+.+.+||+|+||++|.+++.+ ..+++.++.++|+|||++|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999888899999999999999998766 4567889999999999999
Q ss_pred hcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEe--chhhHHHHHHH
Q 019359 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV--TEAEKYNRLIK 264 (342)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ 264 (342)
++.+|...+..++..+++++|.+++|||+...++.++..-+..|..+.+.+.....+.-.+.++..- .+..+...+..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877655544444444333 23344555556
Q ss_pred HHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 265 ~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
++... -..+++||+.+++.|..+.-.|-=.|+++.-+||.+++.+|-+.++.|+.++++|||||+++++|+||+.|
T Consensus 420 l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 420 LITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 55554 36789999999999999999988889999999999999999999999999999999999999999999987
No 21
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=8.4e-48 Score=314.61 Aligned_cols=338 Identities=41% Similarity=0.683 Sum_probs=302.9
Q ss_pred CChHHHHHhhhhcceeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
||+++-.-.+.+..+.++|...|.|+..|.++.+|..+...|...|+..|+|+|.+.++.+++|++.+=.+-||||||++
T Consensus 144 mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlv 223 (610)
T KOG0341|consen 144 MSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 223 (610)
T ss_pred hhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEE
Confidence 78888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcC---CCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC------CCeEEEEEecCCcchhhHHhhcCCC
Q 019359 81 YLLPAFVHVSAQ---PRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR------AGIRSTCIYGGAPKGPQIRDLRRGV 151 (342)
Q Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
|.++++...... .....+.|+..||+||+++|+.|++..+..|... ..+++..+.||.+..++.+...++.
T Consensus 224 FvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~Gv 303 (610)
T KOG0341|consen 224 FVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGV 303 (610)
T ss_pred EeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCe
Confidence 999877765443 3334456999999999999999999988776432 3478888999999999999999999
Q ss_pred cEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCe
Q 019359 152 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPY 231 (342)
Q Consensus 152 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 231 (342)
+|+|+||++|.+.+..+...+.-+.++.+|||+++.+.+|...++.+...+...+|.+++|||++.....+++.-+..|.
T Consensus 304 HivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPv 383 (610)
T KOG0341|consen 304 HIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPV 383 (610)
T ss_pred eEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccce
Confidence 99999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHH
Q 019359 232 KVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSER 311 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 311 (342)
.+.+.+...... .+.+.++....+.++..+++.+.+. ..++||||..+.+++.++++|--+|+.+..+||+-++++|
T Consensus 384 tvNVGRAGAAsl-dViQevEyVkqEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR 460 (610)
T KOG0341|consen 384 TVNVGRAGAASL-DVIQEVEYVKQEAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDR 460 (610)
T ss_pred EEecccccccch-hHHHHHHHHHhhhhhhhHHHHhccC--CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHH
Confidence 998877653322 2333444556677777777776663 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 312 DWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 312 ~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
...++.|+.|+-+|||||++++.|+|+|++
T Consensus 461 ~~ai~afr~gkKDVLVATDVASKGLDFp~i 490 (610)
T KOG0341|consen 461 HYAIEAFRAGKKDVLVATDVASKGLDFPDI 490 (610)
T ss_pred HHHHHHHhcCCCceEEEecchhccCCCccc
Confidence 999999999999999999999999999997
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-46 Score=321.12 Aligned_cols=328 Identities=44% Similarity=0.714 Sum_probs=292.7
Q ss_pred ceeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCC
Q 019359 14 EITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQP 93 (342)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~ 93 (342)
-+.+.|.+.|.+...|....+++.+..++...++..++|+|+.+++.+..|++.+++|+||+|||.+|++|++.++....
T Consensus 61 ~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred eeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 44567888899999999888999999999999999999999999999999999999999999999999999999987763
Q ss_pred CccC----C-CCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcc
Q 019359 94 RLVQ----G-EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ 168 (342)
Q Consensus 94 ~~~~----~-~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 168 (342)
.... + ..++++|++||++|+.|.+++.++|.-..+++...++|+.+...+.....++++|+|+||++|.++++.+
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g 220 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG 220 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc
Confidence 3221 1 2489999999999999999999999998999999999999998899999999999999999999999999
Q ss_pred ccCCCCccEEEEeccchhhc-CCChHHHHHHHhhcCC----CccEEEEEeecCchHHHHHHHhcCC-CeEEEeccccccc
Q 019359 169 HTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRP----DRQTLYWSATWPREVETLARQFLRN-PYKVIIGSLELKA 242 (342)
Q Consensus 169 ~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~----~~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 242 (342)
.+.++.+.++|+|||++|++ .+|.+.++.++..... ..|.+++|||++..+..+...++.+ ...+.+.... ..
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~ 299 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-ST 299 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-cc
Confidence 99999999999999999998 9999999999988754 6799999999999999988888887 4444444433 45
Q ss_pred ccccceEEEEechhhHHHHHHHHHHhhc---CC-----CcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHH
Q 019359 243 NQSINQVVEVVTEAEKYNRLIKLLKEVM---DG-----SRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWV 314 (342)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~-----~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 314 (342)
...+.+.+..+.+.++...|++.+.... .. ++++|||.+++.+..++..|...++++..+||+..+.+|...
T Consensus 300 ~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~a 379 (482)
T KOG0335|consen 300 SENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQA 379 (482)
T ss_pred cccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHH
Confidence 5666777778888889999998887543 22 389999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 315 LAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 315 ~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
++.|+.|.+.+||||+++++|+|+|+|+
T Consensus 380 l~~Fr~g~~pvlVaT~VaaRGlDi~~V~ 407 (482)
T KOG0335|consen 380 LNDFRNGKAPVLVATNVAARGLDIPNVK 407 (482)
T ss_pred HHHhhcCCcceEEEehhhhcCCCCCCCc
Confidence 9999999999999999999999999884
No 23
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-45 Score=309.02 Aligned_cols=315 Identities=34% Similarity=0.497 Sum_probs=276.5
Q ss_pred ccccccCC--CCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceE
Q 019359 26 IRIFQEAN--FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (342)
Q Consensus 26 ~~~~~~~~--~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~v 103 (342)
...|+.++ +++++..++...||...+|.|..+++.+++++|+++.++||||||++|++|++.-+............-+
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vga 82 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGA 82 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeE
Confidence 34577765 5599999999999999999999999999999999999999999999999999998854433322223468
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCC-CCeEEEEEecCCcchhhHHhhcC-CCcEEEeChHHHHHHHhccccC--CCCccEEE
Q 019359 104 LVLAPTRELAVQIQEEALKFGSR-AGIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTN--LRRVTYLV 179 (342)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~--~~~~~~iI 179 (342)
||++||++|+.|+.+.+..|... .++++.++.||.+..+....+.. +++|+|+||++|.+++++.... +..++++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999999888665 68899999999888877766654 5789999999999999985544 45899999
Q ss_pred EeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEeccccc-ccccccceEEEEechhhH
Q 019359 180 LDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLEL-KANQSINQVVEVVTEAEK 258 (342)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 258 (342)
+|||+++++.+|...+..++..+|+.++.=++|||....++.+....+.+|..+.+..... ..+......+.......+
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999998876442 245556777888889999
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCC
Q 019359 259 YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGL 336 (342)
Q Consensus 259 ~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gi 336 (342)
...+.+++..+ ..+|+|||.+|-..++.+...|... ...+..+||.+.+++|..+++.|....-.+|+||+++++||
T Consensus 243 ~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 99999999884 6789999999999999999998865 57889999999999999999999998888999999999999
Q ss_pred CCCCC
Q 019359 337 GRITV 341 (342)
Q Consensus 337 dip~v 341 (342)
|||+|
T Consensus 322 Dip~i 326 (567)
T KOG0345|consen 322 DIPGI 326 (567)
T ss_pred CCCCc
Confidence 99997
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-46 Score=316.19 Aligned_cols=317 Identities=32% Similarity=0.475 Sum_probs=285.6
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
...+..|++++++....++|...+|..++.+|+++|+..+.|++++-.+-||||||++|++|++.++.... -....|.=
T Consensus 65 ~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-Ws~~DGlG 143 (758)
T KOG0343|consen 65 STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-WSPTDGLG 143 (758)
T ss_pred hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC-CCCCCCce
Confidence 46677899999999999999999999999999999999999999999999999999999999999886542 11223677
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcc-ccCCCCccEEEEe
Q 019359 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLD 181 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvD 181 (342)
+||++||++|+.|+.+.+.+.+...++....+.||.+...+...+ ++.+|+||||++|++++..+ .+..+.+.++|+|
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLD 222 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEec
Confidence 999999999999999999999999999999999998876665554 35899999999999998765 4466788999999
Q ss_pred ccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccc-cccccccceEEEEechhhHHH
Q 019359 182 EADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLE-LKANQSINQVVEVVTEAEKYN 260 (342)
Q Consensus 182 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 260 (342)
||++++++||...+..+++.+++.+|.+++|||....+..+++..+.+|.++.+.... ...+....+.+...+..++++
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~ 302 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID 302 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH
Confidence 9999999999999999999999999999999999999999999999999998887433 455777889999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCC
Q 019359 261 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGR 338 (342)
Q Consensus 261 ~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidi 338 (342)
.|-.+|..+. ..+.|||++|.+.+.+++..|.+. |++...+||.|++..|..+..+|......||+||+++++|+|+
T Consensus 303 ~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 303 MLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 9999999974 577999999999999999999864 8899999999999999999999999999999999999999999
Q ss_pred CCCC
Q 019359 339 ITVC 342 (342)
Q Consensus 339 p~v~ 342 (342)
|.|+
T Consensus 382 paVd 385 (758)
T KOG0343|consen 382 PAVD 385 (758)
T ss_pred cccc
Confidence 9874
No 25
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-47 Score=301.42 Aligned_cols=311 Identities=28% Similarity=0.499 Sum_probs=287.3
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceE
Q 019359 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (342)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~v 103 (342)
.+-..||++.+.+.+...+...||..|+|.|.++++..+.|++++..+-.|+|||-+|++|.+..+..... .-..
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~-----~IQ~ 156 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKN-----VIQA 156 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcccc-----ceeE
Confidence 34456999999999999999999999999999999999999999999999999999999999999877643 4568
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEecc
Q 019359 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEA 183 (342)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~ 183 (342)
+|++|+++|+.|+.+.+.++....++.+....||++..+.+-.+....+++|+||++++++..++...++++.++|+|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 99999999999999999999999999999999999999888888888999999999999999998889999999999999
Q ss_pred chhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHH
Q 019359 184 DRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLI 263 (342)
Q Consensus 184 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 263 (342)
+.+++..|...+..++..+++.+|++++|||+|-.+..++.+++..|+.+..... -....+.+++....+..+..-|.
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLn 314 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLN 314 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHH
Confidence 9999999999999999999999999999999999999999999999998877643 34455677888888889988888
Q ss_pred HHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 264 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.++.+. .-++.||||||...++.++..+.+.|+.++++|+.|-+++|..+.+.|++|.++.||||+.+.+|||++.||
T Consensus 315 tLfskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavN 392 (459)
T KOG0326|consen 315 TLFSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVN 392 (459)
T ss_pred HHHHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceee
Confidence 877765 557799999999999999999999999999999999999999999999999999999999999999999885
No 26
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-45 Score=337.01 Aligned_cols=340 Identities=46% Similarity=0.800 Sum_probs=316.0
Q ss_pred CChHHHHHhhhhcc-eeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhh
Q 019359 1 MTETEVKMYRARRE-ITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 79 (342)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~ 79 (342)
||..++.+|+.... +.++|..-|.|...|.+.|++..++..++.+|+..++++|.++|+.++.|+++|-++-||+|||+
T Consensus 338 ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~ 417 (997)
T KOG0334|consen 338 MSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTL 417 (997)
T ss_pred HHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccch
Confidence 67788889988886 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChH
Q 019359 80 SYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 159 (342)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~ 159 (342)
+|++|++.+....+....+.|+.++|++|+++|+.|+.++++.|+...++.+++++|+......+..+.+++.|+||||+
T Consensus 418 af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpG 497 (997)
T KOG0334|consen 418 AFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPG 497 (997)
T ss_pred hhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccc
Confidence 99999999998888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCC---CccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEec
Q 019359 160 RLIDMLEAQHTNLR---RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (342)
Q Consensus 160 ~l~~~~~~~~~~~~---~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
++.+.+-.+...+. .+.++|+||++++.+.+|.++...+++.+++..|.+++|||++..++.+....+..|..+.+.
T Consensus 498 RmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~ 577 (997)
T KOG0334|consen 498 RMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG 577 (997)
T ss_pred hhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc
Confidence 99998776655444 455999999999999999999999999999999999999999999999999999999997776
Q ss_pred ccccccccccceEEEEec-hhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHH
Q 019359 237 SLELKANQSINQVVEVVT-EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVL 315 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 315 (342)
.. ......+.+.+.+.. +..+...|.++|.......++||||.+.+.|..+.+.|.+.|+.+..+||+.++.+|...+
T Consensus 578 ~~-svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti 656 (997)
T KOG0334|consen 578 GR-SVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTI 656 (997)
T ss_pred cc-eeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHH
Confidence 43 344555666666666 8999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCEEEEecccccCCCCCCC
Q 019359 316 AEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 316 ~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
+.|+++...+||+|+.+++|+|++++
T Consensus 657 ~dfK~~~~~LLvaTsvvarGLdv~~l 682 (997)
T KOG0334|consen 657 EDFKNGVVNLLVATSVVARGLDVKEL 682 (997)
T ss_pred HHHhccCceEEEehhhhhcccccccc
Confidence 99999999999999999999999876
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-44 Score=296.98 Aligned_cols=312 Identities=29% Similarity=0.428 Sum_probs=277.2
Q ss_pred ccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCc-cC
Q 019359 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL-VQ 97 (342)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~-~~ 97 (342)
++........|+++++++.+++++.+.||..|+.+|+.+++.++.|++++..|.||||||.+|++|+++.+...... ..
T Consensus 11 ~~~ee~~~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~ 90 (569)
T KOG0346|consen 11 PQVEESKEKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDG 90 (569)
T ss_pred cchhhhhhccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccc
Confidence 33444555789999999999999999999999999999999999999999999999999999999999988765443 33
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhcCCC--CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccc-cCCCC
Q 019359 98 GEGPIVLVLAPTRELAVQIQEEALKFGSRA--GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-TNLRR 174 (342)
Q Consensus 98 ~~~~~vlil~p~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~ 174 (342)
..++.++|++||++|+.|.+..+.++.... .+++.-+.++.+.......+...++|+|+||..++.++..+. ..+..
T Consensus 91 e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~ 170 (569)
T KOG0346|consen 91 EQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDS 170 (569)
T ss_pred cccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhh
Confidence 457899999999999999999888764433 455555665555555556677779999999999999998876 56788
Q ss_pred ccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEec
Q 019359 175 VTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT 254 (342)
Q Consensus 175 ~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
+.++|+|||+.++..||...+..+...+|+..|.++||||+.+++..+...++.+|........+...+....++.....
T Consensus 171 l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 171 LSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS 250 (569)
T ss_pred eeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888888888888
Q ss_pred hhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 255 EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 255 ~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++...+..+++-..-.+|.|||+|++..+..+.-.|...|++..+++|++|...|--++++|+.|-++++|||+
T Consensus 251 e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD 326 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATD 326 (569)
T ss_pred cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEcc
Confidence 8888888888877666688999999999999999999999999999999999999999999999999999999998
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-43 Score=298.97 Aligned_cols=318 Identities=32% Similarity=0.492 Sum_probs=266.4
Q ss_pred cccccccCCCCHHHHHHHHH-cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcC-CCccCCCCce
Q 019359 25 PIRIFQEANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQ-PRLVQGEGPI 102 (342)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~~~~~ 102 (342)
....|..+|+++.+++.|++ +++..|+.+|.++++.++.|+++++.++||+|||++|++|+++.+..- ++.+...|..
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 34459999999999999986 899999999999999999999999999999999999999999988653 4445556899
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCeEE-EEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcc-ccCCCCccEEEE
Q 019359 103 VLVLAPTRELAVQIQEEALKFGSRAGIRS-TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVL 180 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIv 180 (342)
+||++||++|+.|.++.++++......-+ +.+.||.....+...+.++.+|+|+||++|++++.+- .+.++.+.++|+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 99999999999999999999887765433 4567888888888888999999999999999998874 457888999999
Q ss_pred eccchhhcCCChHHHHHHHhhcCC-------------CccEEEEEeecCchHHHHHHHhcCCCeEEEecccc--------
Q 019359 181 DEADRMLDMGFEPQIRKIVTQIRP-------------DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLE-------- 239 (342)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-------- 239 (342)
||++++++.||...+..+++.+.+ ..|-+++|||+.+.+.++...-+.+|..+......
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 999999999999999988877722 25778999999999999999999998887722111
Q ss_pred ----------------cccccccceEEEEechhhHHHHHHHHHHhhcC---CCcEEEEeCCchhHHHHHHHHHhC-----
Q 019359 240 ----------------LKANQSINQVVEVVTEAEKYNRLIKLLKEVMD---GSRILIFTETKKGCDQVTRQLRMD----- 295 (342)
Q Consensus 240 ----------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~lvf~~~~~~~~~l~~~L~~~----- 295 (342)
...+....+.+.+++..-.+..|..++.+... ..|+|||+++.+.+++-++.|...
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 01123344556666666677777777776554 458999999999999988888641
Q ss_pred -----------------CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 296 -----------------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 296 -----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+.+++-+||+|++++|..+++.|...+-.||+||+++++|+|+|+|.
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~ 517 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVG 517 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcC
Confidence 33578899999999999999999999989999999999999999984
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-43 Score=283.44 Aligned_cols=314 Identities=27% Similarity=0.440 Sum_probs=275.5
Q ss_pred ccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCcc
Q 019359 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV 96 (342)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~ 96 (342)
+.-.-.....|+++.+.|++.+++..++|..|+.+|..+++.++.. ++.+.++..|+|||.+|.+.++.++.-...
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~-- 159 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVV-- 159 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcccc--
Confidence 3333445667999999999999999999999999999999998876 789999999999999999999999877654
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC-cchhhHHhhcCCCcEEEeChHHHHHHHhc-cccCCCC
Q 019359 97 QGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGA-PKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRR 174 (342)
Q Consensus 97 ~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~ 174 (342)
.+.++.++|+++|+.|+.+.+.+.+.+.++.......+. ..... .-...|+++||+.+.++... +..++.+
T Consensus 160 ---~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~----~i~eqIviGTPGtv~Dlm~klk~id~~k 232 (477)
T KOG0332|consen 160 ---VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN----KLTEQIVIGTPGTVLDLMLKLKCIDLEK 232 (477)
T ss_pred ---CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC----cchhheeeCCCccHHHHHHHHHhhChhh
Confidence 677899999999999999999999988877776655544 22111 11257999999999998777 6667889
Q ss_pred ccEEEEeccchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEe
Q 019359 175 VTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV 253 (342)
Q Consensus 175 ~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
+.++|+|||+.+.+ .||++.-..+...++++.|++.+|||+...+..++...+.++....+...+.......+.++...
T Consensus 233 ikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~ 312 (477)
T KOG0332|consen 233 IKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCA 312 (477)
T ss_pred ceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeecc
Confidence 99999999998875 56888888999999999999999999999999999999999999999988888888888888888
Q ss_pred chhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019359 254 TEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (342)
Q Consensus 254 ~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 333 (342)
...++++.+.++..- ..-+..||||.+++.|..++..+.+.|+.+.++||++...+|..+++.|++|.-+|||+|++++
T Consensus 313 ~~~~K~~~l~~lyg~-~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A 391 (477)
T KOG0332|consen 313 CRDDKYQALVNLYGL-LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA 391 (477)
T ss_pred chhhHHHHHHHHHhh-hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh
Confidence 889999999986544 3457799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 019359 334 RGLGRITVC 342 (342)
Q Consensus 334 ~Gidip~v~ 342 (342)
+|||++.|+
T Consensus 392 RGiDv~qVs 400 (477)
T KOG0332|consen 392 RGIDVAQVS 400 (477)
T ss_pred cccccceEE
Confidence 999999874
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.3e-41 Score=318.32 Aligned_cols=295 Identities=21% Similarity=0.265 Sum_probs=226.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 33 NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 33 ~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
.+++.+.+++...||..|+++|.++++.++.|+|+++.+|||||||++|+++++..+...+ +.++||++|+++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~------~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP------RATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC------CcEEEEEcChHHH
Confidence 4899999999999999999999999999999999999999999999999999999886542 5789999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccc----cCCCCccEEEEeccchhhc
Q 019359 113 AVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH----TNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~----~~~~~~~~iIvDE~h~~~~ 188 (342)
+.|+.+.++.+. ..++.+..+.|+.+. .+...+...++|+|+||+.+...+.... ..++.++++|+||+|.+.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 347788777777654 3444555668999999999875332211 1267899999999999765
Q ss_pred CCChHHHHHHH-------hhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEec-------
Q 019359 189 MGFEPQIRKIV-------TQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT------- 254 (342)
Q Consensus 189 ~~~~~~~~~~~-------~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 254 (342)
.|+..+..++ ..++...|++++|||++...+ +...+.+.+......... . .......+....
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~~~~~-~-~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVTEDGS-P-RGARTVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEECCCCC-C-cCceEEEEecCCccccccc
Confidence 3555544333 334567899999999987754 566777777544322111 1 111111110010
Q ss_pred ---------hhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC--------CCCcEeecCCCCHHHHHHHHHH
Q 019359 255 ---------EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--------GWPALSIHGDKNQSERDWVLAE 317 (342)
Q Consensus 255 ---------~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~ 317 (342)
...+...+..++. .+.++||||+|++.++.++..|++. +.++..+||++++++|..++++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 1123333444443 3689999999999999999988753 5678899999999999999999
Q ss_pred HhcCCCCEEEEecccccCCCCCCCC
Q 019359 318 FRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 318 f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|++|++++||||+++++|||+|+|+
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd 349 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLD 349 (742)
T ss_pred HHcCCceEEEECchHhccCCccccc
Confidence 9999999999999999999999974
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-43 Score=297.13 Aligned_cols=316 Identities=33% Similarity=0.460 Sum_probs=246.2
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCcc------
Q 019359 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV------ 96 (342)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~------ 96 (342)
-.+..|..|++|..+.++|..+||..|+++|.-.++....| .+++=.|.||||||++|-+|+++.+.......
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34556899999999999999999999999999999998888 79999999999999999999999543321110
Q ss_pred CCCCce--EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc---C
Q 019359 97 QGEGPI--VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT---N 171 (342)
Q Consensus 97 ~~~~~~--vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~---~ 171 (342)
...+++ .||++|||+|+.|+...+..++...++.+..+.||-....+-+.+...++|+|+||++|+.+++.+.. +
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 111344 99999999999999999999999999999999999999999888888999999999999999887654 5
Q ss_pred CCCccEEEEeccchhhcCCChHHHHHHHhhcC-----CCccEEEEEeecCchHHH---------------------HHHH
Q 019359 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR-----PDRQTLYWSATWPREVET---------------------LARQ 225 (342)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~~SaT~~~~~~~---------------------~~~~ 225 (342)
+.++.++|+||+++|+..|+...+..+++.+. ...|.+.+|||+.-.... ++..
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 77899999999999999998888888877664 457999999997443211 1111
Q ss_pred --hcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeec
Q 019359 226 --FLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIH 303 (342)
Q Consensus 226 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~ 303 (342)
+.+.|..+...+............+.+ +..++.-.+.+++..+ .+++|||||++..+..++-.|+..+++...+|
T Consensus 418 ig~~~kpkiiD~t~q~~ta~~l~Es~I~C-~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATASTLTESLIEC-PPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred hCccCCCeeEecCcchhHHHHHHHHhhcC-CccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 122333332222211111111111111 1111111122222221 57899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 304 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 304 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+.|.+++|-.-+++|++..-.|||||+++++|+|||+|.
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~ 533 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQ 533 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcc
Confidence 999999999999999999999999999999999999973
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-41 Score=278.70 Aligned_cols=311 Identities=34% Similarity=0.511 Sum_probs=288.2
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
.--|+.++++..+.+++..-||..|+|.|+..++.++.++++.-.+-||+|||.+++++++.++....+ .|.++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~----~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQ----TGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccc----cccceee
Confidence 456999999999999999999999999999999999999999999999999999999999999887652 3789999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
+.|+++|+.|+....+.++.+.++++.++.|+.+..++...+..+.|+|++||+.+....-.....++.+.++|+||++.
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999988899999999999887666667789999999999999
Q ss_pred hhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHH
Q 019359 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKL 265 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (342)
+...+|.+.+..++..++...|.+.||||+++.+..+.+..+.+|..+.... +..........+......++...|+..
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldv-etkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDV-ETKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeeh-hhhcchhhhhheeeeccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888543 345666677788888899999999999
Q ss_pred HHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 266 LKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 266 l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
+......++++|||++..+++.+...|...|+.+..+++.+++.-|..-+..|+.++..++|.|+++++|+|+|-+
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipll 330 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLL 330 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccc
Confidence 9888778899999999999999999999999999999999999999999999999999999999999999999964
No 33
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.2e-40 Score=312.16 Aligned_cols=298 Identities=22% Similarity=0.297 Sum_probs=224.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHH-HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
+.|+++++++.+.+.+.+.|+.+|+|+|.++++. +..++|+++++|||+|||++|.++++..+.. +.+++|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~ 72 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALY 72 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEE
Confidence 4688999999999999999999999999999987 7789999999999999999999999888753 567999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
++|+++|+.|..+.++++.. .++++..+.|+...... .....+|+|+||+++..++.+....+..++++|+||+|.
T Consensus 73 i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred EeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc
Confidence 99999999999999998754 47888888887654332 223579999999999888876555678899999999999
Q ss_pred hhcCCChHHHHHHHhhc---CCCccEEEEEeecCchHHHHHHHhcCCCeE-EEeccccccc---------ccccceEEEE
Q 019359 186 MLDMGFEPQIRKIVTQI---RPDRQTLYWSATWPREVETLARQFLRNPYK-VIIGSLELKA---------NQSINQVVEV 252 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~---~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~ 252 (342)
+.+.+++..+..++..+ .+..|++++|||++.. ..+.. +++.... ....+..... ..........
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV 226 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC
Confidence 98877887777665544 4678999999998753 23333 3321110 0000000000 0000000000
Q ss_pred echhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCC------------------------------------
Q 019359 253 VTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG------------------------------------ 296 (342)
Q Consensus 253 ~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------------------------------ 296 (342)
.........+.+. ...++++||||+++++++.++..|....
T Consensus 227 ~~~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 227 PSKDDTLNLVLDT---LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred ccchHHHHHHHHH---HHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 0111222222222 2357899999999999999988876421
Q ss_pred CCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 297 WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 297 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
..+..+|+++++.+|..+++.|++|.++||+||+.+++|+|+|.+
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~ 348 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPAR 348 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCce
Confidence 247889999999999999999999999999999999999999985
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.3e-40 Score=295.98 Aligned_cols=278 Identities=24% Similarity=0.318 Sum_probs=211.2
Q ss_pred HHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 43 AKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 43 ~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
+.+||..++|+|.++++.+++++++++.+|||+|||++|+++++.. +..+||++|+++|+.|+...+..
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999998753 45689999999999999888887
Q ss_pred hcCCCCeEEEEEecCCcchhhH---Hhh-cCCCcEEEeChHHHHHHH--hccccCCCCccEEEEeccchhhcCC--ChHH
Q 019359 123 FGSRAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDML--EAQHTNLRRVTYLVLDEADRMLDMG--FEPQ 194 (342)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~--~~~~~~~~~~~~iIvDE~h~~~~~~--~~~~ 194 (342)
+ ++....+.++....+.. ..+ ....+++++||+.+.... .........++++|+||||.+.+++ |+..
T Consensus 74 ~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 74 S----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred c----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 4 66677777665543221 122 234799999999875321 1111134678999999999998776 5666
Q ss_pred HHHH---HhhcCCCccEEEEEeecCchHHHHHHHhcC--CCeEEEecccccccccccceEEEEec-hhhHHHHHHHHHHh
Q 019359 195 IRKI---VTQIRPDRQTLYWSATWPREVETLARQFLR--NPYKVIIGSLELKANQSINQVVEVVT-EAEKYNRLIKLLKE 268 (342)
Q Consensus 195 ~~~~---~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~ 268 (342)
+..+ ...+ ++.+++++|||++..........++ .+..+... .... .. .+.... .......+..++.+
T Consensus 150 ~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s--~~r~--nl--~~~v~~~~~~~~~~l~~~l~~ 222 (470)
T TIGR00614 150 YKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS--FDRP--NL--YYEVRRKTPKILEDLLRFIRK 222 (470)
T ss_pred HHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC--CCCC--Cc--EEEEEeCCccHHHHHHHHHHH
Confidence 5543 3334 4678999999998877665555443 33332221 1111 11 122222 22455667777765
Q ss_pred hcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 269 VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 269 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
...++++||||+++++++.+++.|++.|+.+..+||++++++|..+++.|.+|+.+|||||+++++|||+|+|+
T Consensus 223 ~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~ 296 (470)
T TIGR00614 223 EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVR 296 (470)
T ss_pred hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccce
Confidence 55677789999999999999999999999999999999999999999999999999999999999999999985
No 35
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-41 Score=274.22 Aligned_cols=312 Identities=33% Similarity=0.530 Sum_probs=277.0
Q ss_pred CCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCC
Q 019359 21 DVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEG 100 (342)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~ 100 (342)
+|..-...|++++|++.+.+++...||..|+.+|++++..+.+|.++..++++|+|||.++..++++.+..... .
T Consensus 20 n~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~k-----e 94 (397)
T KOG0327|consen 20 NWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK-----E 94 (397)
T ss_pred cHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchH-----H
Confidence 34555668999999999999999999999999999999999999999999999999999999999988755433 4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH-hhcCCCcEEEeChHHHHHHHhccccCCCCccEEE
Q 019359 101 PIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR-DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLV 179 (342)
Q Consensus 101 ~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 179 (342)
..+|+++|+++|+.|..+....++...+..+..+.|+.+...... ......+|+++||+++...+....+....+.+++
T Consensus 95 ~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfv 174 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFV 174 (397)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEe
Confidence 568999999999999999999999989999999998887774443 3344589999999999999988877777899999
Q ss_pred EeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHH
Q 019359 180 LDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY 259 (342)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (342)
+||++.++..++.+.+..+.+.++++.|++++|||++.++......+..+|..+.....+...... .+++.....+.+.
T Consensus 175 lDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gi-kq~~i~v~k~~k~ 253 (397)
T KOG0327|consen 175 LDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGI-KQFYINVEKEEKL 253 (397)
T ss_pred ecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhhe-eeeeeeccccccc
Confidence 999999999999999999999999999999999999999999999999999999999887554443 3444445555588
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 260 NRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 260 ~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
.-++.+.+ .-...++|||+++.+..+...|.+.+..+..+||++.+.+|..++++|+.|..+|||.|+.+++|+|+-
T Consensus 254 ~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 254 DTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred cHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchh
Confidence 88888887 346689999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 019359 340 TV 341 (342)
Q Consensus 340 ~v 341 (342)
++
T Consensus 331 ~~ 332 (397)
T KOG0327|consen 331 QV 332 (397)
T ss_pred hc
Confidence 75
No 36
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-39 Score=307.83 Aligned_cols=298 Identities=21% Similarity=0.229 Sum_probs=227.3
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHH-HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEE
Q 019359 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (342)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil 106 (342)
.|+++++++.+.+.++..|+..|+|+|.++++. +..++++++++|||+|||+++.++++..+... +.++||+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 678899999999999999999999999999985 78899999999999999999999988877642 5689999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh
Q 019359 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (342)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (342)
+|+++|+.|+.+.+..+.. .++.+..++|+...... ....++|+|+||+++..++......++.++++|+||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 9999999999999988743 58888888888665432 2345899999999998887766556788999999999999
Q ss_pred hcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEE-EecccccccccccceEEEEech------hhHH
Q 019359 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKV-IIGSLELKANQSINQVVEVVTE------AEKY 259 (342)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~ 259 (342)
.+.+++..+..++..+....|++++|||++.. ..+.. +++..... ...+.................. ....
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWE 228 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHH
Confidence 88888889999998888889999999999753 34443 44332110 0000000000000011111110 1111
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC---------------------------------CCCcEeecCCC
Q 019359 260 NRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD---------------------------------GWPALSIHGDK 306 (342)
Q Consensus 260 ~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~~~~~ 306 (342)
..+.+.+. .++++||||++++.++.++..|.+. ...+..+|+++
T Consensus 229 ~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 229 SLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 22222222 4789999999999998877666321 12478999999
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 307 NQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 307 ~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
++++|..+++.|++|.++|||||+.+++|+|+|.+
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~ 340 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAF 340 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCce
Confidence 99999999999999999999999999999999975
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.9e-39 Score=302.06 Aligned_cols=298 Identities=22% Similarity=0.256 Sum_probs=223.3
Q ss_pred cccccc--CCCCHHHHHHHH-HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce
Q 019359 26 IRIFQE--ANFPDYCLEVIA-KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (342)
Q Consensus 26 ~~~~~~--~~~~~~~~~~l~-~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
...|.. ++.+..+...+. .+|+..++|.|.++++.++.|+++++.+|||+|||++|.++++.. +..
T Consensus 434 ~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~Gi 502 (1195)
T PLN03137 434 DKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGI 502 (1195)
T ss_pred CccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCc
Confidence 334664 444555655555 489999999999999999999999999999999999999999864 456
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhh---c---CCCcEEEeChHHHHH--HHhccc---cC
Q 019359 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDL---R---RGVEIVIATPGRLID--MLEAQH---TN 171 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~iiv~T~~~l~~--~~~~~~---~~ 171 (342)
+|||+|+++|+.++...+.. .++....+.++....+....+ . ...+|+++||+++.. .+.... ..
T Consensus 503 TLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~ 578 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNS 578 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhh
Confidence 99999999999866665555 378888888876655443222 1 358999999999752 111111 11
Q ss_pred CCCccEEEEeccchhhcCC--ChHHHHHH--HhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccc
Q 019359 172 LRRVTYLVLDEADRMLDMG--FEPQIRKI--VTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSIN 247 (342)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
...+.+|||||||.+..+| |++.+..+ +....+..+++++|||++..+...+...++......+.....+.+
T Consensus 579 ~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpN---- 654 (1195)
T PLN03137 579 RGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPN---- 654 (1195)
T ss_pred ccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccc----
Confidence 2347899999999999887 77777653 223334678999999998887776665555443333332222221
Q ss_pred eEEEEech-hhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEE
Q 019359 248 QVVEVVTE-AEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIM 326 (342)
Q Consensus 248 ~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 326 (342)
..+..... ......+..++.....++..||||.+++.++.++..|.+.|+.+..+||++++.+|..+++.|..|+++||
T Consensus 655 L~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VL 734 (1195)
T PLN03137 655 LWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINII 734 (1195)
T ss_pred eEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 12222222 22345666666655456789999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCCCC
Q 019359 327 TATDVAARGLGRITVC 342 (342)
Q Consensus 327 v~t~~~~~Gidip~v~ 342 (342)
|||+++++|||+|+|+
T Consensus 735 VATdAFGMGIDkPDVR 750 (1195)
T PLN03137 735 CATVAFGMGINKPDVR 750 (1195)
T ss_pred EEechhhcCCCccCCc
Confidence 9999999999999986
No 38
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.7e-40 Score=287.56 Aligned_cols=318 Identities=28% Similarity=0.409 Sum_probs=282.7
Q ss_pred eccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccC
Q 019359 18 EGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQ 97 (342)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~ 97 (342)
++...+.....|+++.+...+..+|...+|..|+++|..+++.+..+-+.++++-.|+|||++|...++..+..+..
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~--- 92 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSS--- 92 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccC---
Confidence 46677888999999999999999999999999999999999999999999999999999999999888887766543
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhcC-CCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCcc
Q 019359 98 GEGPIVLVLAPTRELAVQIQEEALKFGS-RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVT 176 (342)
Q Consensus 98 ~~~~~vlil~p~~~l~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 176 (342)
..+++|++||++++-|+.+.+..++. ..|++|..+.||+........+. .++|+|+||+++..+++....+.++++
T Consensus 93 --~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 93 --HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVR 169 (980)
T ss_pred --cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCcccee
Confidence 56799999999999999999999987 34899999999998887766655 478999999999999999999999999
Q ss_pred EEEEeccchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEech
Q 019359 177 YLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE 255 (342)
Q Consensus 177 ~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (342)
++|+|||+.+.+ ..|...+..++..++..+|++++|||.+..+......++.+|..+....+........+..+.....
T Consensus 170 lfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 170 LFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSP 249 (980)
T ss_pred EEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCC
Confidence 999999999987 5699999999999999999999999999999999999999999999988776666555555544443
Q ss_pred h-------hHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEE
Q 019359 256 A-------EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA 328 (342)
Q Consensus 256 ~-------~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 328 (342)
. .+.+.|.+++.+. +-.+.||||+....|+-++..|+..|+++-+++|.|++++|..++..++.-..+|||+
T Consensus 250 nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 2 3555565555553 5678999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCCCCC
Q 019359 329 TDVAARGLGRITVC 342 (342)
Q Consensus 329 t~~~~~Gidip~v~ 342 (342)
|+..++|||-|+||
T Consensus 329 TDLtaRGIDa~~vN 342 (980)
T KOG4284|consen 329 TDLTARGIDADNVN 342 (980)
T ss_pred cchhhccCCccccc
Confidence 99999999999886
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.3e-39 Score=305.64 Aligned_cols=307 Identities=21% Similarity=0.233 Sum_probs=219.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCc-cCCCCceEEEEcCcHHH
Q 019359 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL-VQGEGPIVLVLAPTREL 112 (342)
Q Consensus 34 ~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~-~~~~~~~vlil~p~~~l 112 (342)
+++.+.+.+.. +|..|+|+|.++++.+.+|+++++++|||+|||++|+++++..+...... ....+.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67777777776 68899999999999999999999999999999999999999887643211 11236789999999999
Q ss_pred HHHHHHHHHH-------hc----CCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc--CCCCccEE
Q 019359 113 AVQIQEEALK-------FG----SRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--NLRRVTYL 178 (342)
Q Consensus 113 ~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~i 178 (342)
+.|+.+.+.+ ++ ... ++.+...+|+.+.......+.+.++|+|+||+++..++..... .+..+++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9998875542 22 233 6788889999887776666677899999999999877655432 46789999
Q ss_pred EEeccchhhcCCChHHHHH----HHhhcCCCccEEEEEeecCchHHHHHHHhcCC-----CeEEEecccccccccccceE
Q 019359 179 VLDEADRMLDMGFEPQIRK----IVTQIRPDRQTLYWSATWPREVETLARQFLRN-----PYKVIIGSLELKANQSINQV 249 (342)
Q Consensus 179 IvDE~h~~~~~~~~~~~~~----~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 249 (342)
|+||+|.+.+..++..+.. +....+...|++++|||+++. +.......+. +....+..............
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 9999999987665554433 333334678999999998653 2333322221 11111111100000000000
Q ss_pred -----EEEechhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhC------CCCcEeecCCCCHHHHHHHHHH
Q 019359 250 -----VEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMD------GWPALSIHGDKNQSERDWVLAE 317 (342)
Q Consensus 250 -----~~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~ 317 (342)
............+...+.+.. .++++||||++++.|+.++..|++. +..+..+||+++.++|..+++.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 000111112223333333322 3688999999999999999999863 4678999999999999999999
Q ss_pred HhcCCCCEEEEecccccCCCCCCCC
Q 019359 318 FRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 318 f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|++|+++|||||+++++|||+|+|+
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd 360 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYID 360 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCc
Confidence 9999999999999999999999874
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.4e-38 Score=291.39 Aligned_cols=286 Identities=21% Similarity=0.321 Sum_probs=212.6
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 34 FPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 34 ~~~~~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
.+....+.++. +||..++|+|.++++.++.++++++.+|||+|||++|+++++.. ...+||++|+++|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL 77 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISL 77 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHH
Confidence 33444455554 79999999999999999999999999999999999999998754 3468999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH---hh-cCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc
Q 019359 113 AVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DL-RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (342)
+.|+...++.+ ++....+.++........ .. ....+++++||+++.............++++||||||.+.+
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 99999888874 566666666654433322 12 23478999999998632111122234689999999999987
Q ss_pred CC--ChHHHHHH---HhhcCCCccEEEEEeecCchHHHHHHHhcC--CCeEEEecccccccccccceEEEEechhhHHHH
Q 019359 189 MG--FEPQIRKI---VTQIRPDRQTLYWSATWPREVETLARQFLR--NPYKVIIGSLELKANQSINQVVEVVTEAEKYNR 261 (342)
Q Consensus 189 ~~--~~~~~~~~---~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (342)
++ |++.+..+ ...+ ++.+++++|||++..........+. ++..... ...+.+ ..+...........
T Consensus 154 ~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~--~~~r~n----l~~~v~~~~~~~~~ 226 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDRPN----IRYTLVEKFKPLDQ 226 (607)
T ss_pred ccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC--CCCCCc----ceeeeeeccchHHH
Confidence 65 56555443 3333 4678999999998776554444433 3332221 111111 12222233334455
Q ss_pred HHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
+..++... .++++||||+++++++.++..|++.|+.+..+|+++++++|..+++.|..|+.+|||||+++++|||+|+|
T Consensus 227 l~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V 305 (607)
T PRK11057 227 LMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNV 305 (607)
T ss_pred HHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCc
Confidence 66666543 57889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 019359 342 C 342 (342)
Q Consensus 342 ~ 342 (342)
+
T Consensus 306 ~ 306 (607)
T PRK11057 306 R 306 (607)
T ss_pred C
Confidence 5
No 41
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.1e-38 Score=297.92 Aligned_cols=300 Identities=20% Similarity=0.252 Sum_probs=221.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEE
Q 019359 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (342)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil 106 (342)
+.|+++++++.+.+.+...+|. ++++|.++++.+.+++++++++|||+|||+++.++++..+.. +.+++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i 71 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYI 71 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEE
Confidence 3678899999999999999995 999999999999999999999999999999998888877654 4579999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh
Q 019359 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (342)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (342)
+|+++|+.|..+.++++. ..+..+....|+...... .....+|+|+||+++..++.+....+..++++|+||+|.+
T Consensus 72 ~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII 147 (674)
T ss_pred echHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc
Confidence 999999999999998864 357788777777654332 2245799999999998887766556788999999999998
Q ss_pred hcCCChHHHHHHHhh---cCCCccEEEEEeecCchHHHHHHHhcCCCeEE-EecccccccccccceEEEEechhhHHHHH
Q 019359 187 LDMGFEPQIRKIVTQ---IRPDRQTLYWSATWPREVETLARQFLRNPYKV-IIGSLELKANQSINQVVEVVTEAEKYNRL 262 (342)
Q Consensus 187 ~~~~~~~~~~~~~~~---~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (342)
.+.+++..+..++.. .+++.|++++|||++.. ..+.. +++..... ...+.+......................+
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~ 225 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDI 225 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCccCCCCCCCCeEEEEEecCeeeecccccccccH
Confidence 877777777766543 45678999999998753 33433 33322110 00000000000000000000011111113
Q ss_pred HHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhCC-------------------------CCcEeecCCCCHHHHHHHHH
Q 019359 263 IKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDG-------------------------WPALSIHGDKNQSERDWVLA 316 (342)
Q Consensus 263 ~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~-------------------------~~~~~~~~~~~~~~r~~~~~ 316 (342)
...+.+. ..++++||||++++.++.++..|.+.. ..+..+||+++..+|..+++
T Consensus 226 ~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred HHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 3333332 347899999999999999998886431 13678999999999999999
Q ss_pred HHhcCCCCEEEEecccccCCCCCCC
Q 019359 317 EFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 317 ~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
.|++|.++|||||+++++|+|+|+.
T Consensus 306 ~f~~g~i~VLvaT~~la~Gvnipa~ 330 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPAR 330 (674)
T ss_pred HHHcCCCeEEEecchhhccCCCcce
Confidence 9999999999999999999999974
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.5e-38 Score=291.46 Aligned_cols=281 Identities=21% Similarity=0.288 Sum_probs=216.2
Q ss_pred HHH-HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 019359 41 VIA-KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (342)
Q Consensus 41 ~l~-~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~ 119 (342)
.|+ .+||..+++.|.++++.++.|+++++.+|||+|||++|+++++.. +..++|++|+++|..|+.+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 344 489999999999999999999999999999999999999988753 44589999999999999998
Q ss_pred HHHhcCCCCeEEEEEecCCcchhhHH----hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC--ChH
Q 019359 120 ALKFGSRAGIRSTCIYGGAPKGPQIR----DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG--FEP 193 (342)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~--~~~ 193 (342)
++.+ ++.+..++++....+... ......+++++||+++.............++++||||||.+..++ |++
T Consensus 73 l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 73 LRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 8885 667777777765443322 223458999999999865333333345679999999999998765 666
Q ss_pred HHHHH---HhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhc
Q 019359 194 QIRKI---VTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM 270 (342)
Q Consensus 194 ~~~~~---~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 270 (342)
.+..+ ...++ ..+++++|||++......+...++.+....+.....+ .+..+.......+...+.+++...
T Consensus 149 ~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r----~nl~~~v~~~~~~~~~l~~~l~~~- 222 (591)
T TIGR01389 149 EYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSFDR----PNLRFSVVKKNNKQKFLLDYLKKH- 222 (591)
T ss_pred HHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCC----CCcEEEEEeCCCHHHHHHHHHHhc-
Confidence 66554 33343 4559999999988877666655543222222111111 122233333445566677777664
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.++++||||+++++++.+++.|...|+++..+||+++.++|..+++.|..|+++|||||+++++|||+|+|+
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~ 294 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVR 294 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCC
Confidence 368899999999999999999999999999999999999999999999999999999999999999999985
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.1e-38 Score=288.36 Aligned_cols=301 Identities=24% Similarity=0.265 Sum_probs=237.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHH
Q 019359 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (342)
Q Consensus 34 ~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~ 113 (342)
+++.+.+.+... |..|++.|.++++.+..|+|+|+.+|||+|||++++++++..+..........+-.+||++|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 789999999988 9999999999999999999999999999999999999999999887322222367999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc--CCCCccEEEEeccchhhcCCC
Q 019359 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--NLRRVTYLVLDEADRMLDMGF 191 (342)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~iIvDE~h~~~~~~~ 191 (342)
..+...++.++...|+++..-+|+++.....+...+.++|++|||++|.-++..... .+..+.++||||.|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999999999988888899999999999999877665433 477899999999999876655
Q ss_pred hHHHH----HHHhhcCCCccEEEEEeecCchHHHHHHHhcCCC--eEEEecccccccccccceEEEEe-------chhhH
Q 019359 192 EPQIR----KIVTQIRPDRQTLYWSATWPREVETLARQFLRNP--YKVIIGSLELKANQSINQVVEVV-------TEAEK 258 (342)
Q Consensus 192 ~~~~~----~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 258 (342)
+..+. ++....+ +.|.|++|||..+ .+...+...+.. ..+..... .....+....... .....
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~--~k~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA--AKKLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc--CCcceEEEEecCCccccccchhHHH
Confidence 54443 3333333 7899999999864 344555454443 22222111 1111111111111 11223
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCC-CCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCC
Q 019359 259 YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG-WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLG 337 (342)
Q Consensus 259 ~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid 337 (342)
+..+.+.+++ .+.+|||+||+..++.++..|++.+ ..+..+||+++..+|..+.++|++|+.+++|||+.++-|||
T Consensus 243 ~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGID 319 (814)
T COG1201 243 YERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319 (814)
T ss_pred HHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccc
Confidence 4444444444 4579999999999999999999887 88999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 019359 338 RITVC 342 (342)
Q Consensus 338 ip~v~ 342 (342)
+.+|.
T Consensus 320 iG~vd 324 (814)
T COG1201 320 IGDID 324 (814)
T ss_pred cCCce
Confidence 98863
No 44
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.9e-39 Score=274.80 Aligned_cols=334 Identities=31% Similarity=0.429 Sum_probs=283.6
Q ss_pred HhhhhcceeeeccCCCcccccccc----CCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHH
Q 019359 8 MYRARREITVEGHDVPRPIRIFQE----ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~ 83 (342)
..+..+.+.+.|...|.|...|+. +.+...++..+...+|..|+|.|.++++.+..+++++.++|||+|||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 456677888899999999999998 4678899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc--CCCCeEEEEEecCCcch-hhHHhhcCCCcEEEeChHH
Q 019359 84 PAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG--SRAGIRSTCIYGGAPKG-PQIRDLRRGVEIVIATPGR 160 (342)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iiv~T~~~ 160 (342)
+++.++..........|-+++|+.|+++|+.|.+.++.++. ...++....+....... .........++++++||-+
T Consensus 193 Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~r 272 (593)
T KOG0344|consen 193 PILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR 272 (593)
T ss_pred HHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHH
Confidence 99999987654333347899999999999999999999998 55555555444432111 1111222348999999999
Q ss_pred HHHHHhccc--cCCCCccEEEEeccchhhcC-CChHHHHHHHhhcC-CCccEEEEEeecCchHHHHHHHhcCCCeEEEec
Q 019359 161 LIDMLEAQH--TNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIR-PDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (342)
Q Consensus 161 l~~~~~~~~--~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
+...+.... .++.++.++|+||++.+.++ .|..++..+++.+. ++.++-++|||.+..++.++......+..+.+.
T Consensus 273 i~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg 352 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG 352 (593)
T ss_pred HHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe
Confidence 999988765 57889999999999999988 78888888877764 456677899999999999999999999999988
Q ss_pred ccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHH-HhCCCCcEeecCCCCHHHHHHHH
Q 019359 237 SLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQL-RMDGWPALSIHGDKNQSERDWVL 315 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~ 315 (342)
..+.......+..++...+..+.-.+.+.+... -..+++||+.+++.|..+...| .-.++++..+||+-++.+|++.+
T Consensus 353 ~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 353 LRNSANETVDQELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred cchhHhhhhhhhheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHH
Confidence 776555555667777888889999999888886 3577999999999999999999 56689999999999999999999
Q ss_pred HHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 316 AEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 316 ~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
++|+.|++.||+||+++++|+|+.++|
T Consensus 432 ~~FR~g~IwvLicTdll~RGiDf~gvn 458 (593)
T KOG0344|consen 432 ERFRIGKIWVLICTDLLARGIDFKGVN 458 (593)
T ss_pred HHHhccCeeEEEehhhhhccccccCcc
Confidence 999999999999999999999999886
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7.2e-37 Score=289.25 Aligned_cols=281 Identities=20% Similarity=0.214 Sum_probs=208.7
Q ss_pred HHHHHHHHcCCCCCcHHHHhhHHHHhcC------CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcH
Q 019359 37 YCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (342)
Q Consensus 37 ~~~~~l~~~~~~~l~~~Q~~~~~~~~~~------~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~ 110 (342)
+.......++| .|++.|.++++.+.++ .+.+++||||+|||.+++.+++..+.. +.+++|++||+
T Consensus 440 ~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLvPT~ 510 (926)
T TIGR00580 440 WQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLVPTT 510 (926)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEeCcH
Confidence 33444556899 6999999999998874 689999999999999999988887754 56899999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh---HHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh
Q 019359 111 ELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (342)
Q Consensus 111 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (342)
+|+.|+.+.++++....++.+..++++.+..+. ...+.. ..+|+|+||..+ .....+.+++++|+||+|++
T Consensus 511 ~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf 585 (926)
T TIGR00580 511 LLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF 585 (926)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc
Confidence 999999999998777778888888877654332 233333 489999999432 23456788999999999985
Q ss_pred hcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHH
Q 019359 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLL 266 (342)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 266 (342)
+......+..+....++++||||+.+....+......++..+...+.. ...+...+.......... .+.
T Consensus 586 -----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~~~~i~~---~i~ 654 (926)
T TIGR00580 586 -----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYDPELVRE---AIR 654 (926)
T ss_pred -----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecCHHHHHH---HHH
Confidence 333444555666788999999998665444433333444433332211 111222222111111111 122
Q ss_pred HhhcCCCcEEEEeCCchhHHHHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 267 KEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 267 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+....+++++|||+++++++.+++.|++. +.++..+||+|++.+|..++++|++|+.+|||||+++++|||+|+++
T Consensus 655 ~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~ 732 (926)
T TIGR00580 655 RELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNAN 732 (926)
T ss_pred HHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCC
Confidence 33345789999999999999999999974 67899999999999999999999999999999999999999999975
No 46
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-37 Score=261.60 Aligned_cols=314 Identities=26% Similarity=0.399 Sum_probs=247.5
Q ss_pred CccccccccCCCCHHHHH----------HHHHcCCCCCcHHHHhhHHHHhc---------CCCEEEEcCCCCchhhHhHH
Q 019359 23 PRPIRIFQEANFPDYCLE----------VIAKLGFVEPTPIQAQGWPMALK---------GRDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~Q~~~~~~~~~---------~~~~l~~~~tG~GKT~~~~~ 83 (342)
++..-.|+.++.++.... ++..++++.+.|.|..++++++. .+++++.||||+|||++|.+
T Consensus 123 ~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~i 202 (620)
T KOG0350|consen 123 NNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVI 202 (620)
T ss_pred CCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehh
Confidence 333444666666655544 48889999999999999888742 47999999999999999999
Q ss_pred HHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCC-----CcEEEeCh
Q 019359 84 PAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRG-----VEIVIATP 158 (342)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~iiv~T~ 158 (342)
|+++.+...+- ..-+++|++|++.|+.|++..|.++++..|+.++.+.|..+...+...+... .||+|+||
T Consensus 203 PIVQ~L~~R~v----~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTP 278 (620)
T KOG0350|consen 203 PIVQLLSSRPV----KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATP 278 (620)
T ss_pred HHHHHHccCCc----cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCc
Confidence 99999887654 2578999999999999999999999999999999999988877776666543 48999999
Q ss_pred HHHHHHHhc-cccCCCCccEEEEeccchhhcCCChHHHHHHHhhc----------------------------------C
Q 019359 159 GRLIDMLEA-QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI----------------------------------R 203 (342)
Q Consensus 159 ~~l~~~~~~-~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~----------------------------------~ 203 (342)
++|.+++.. ..+++.++.++|||||+++++..|...+-.+...+ .
T Consensus 279 GRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~ 358 (620)
T KOG0350|consen 279 GRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLY 358 (620)
T ss_pred hHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcC
Confidence 999999884 56789999999999999988765544433332222 1
Q ss_pred CCccEEEEEeecCchHHHHHHHhcCCCeEEEecc---cccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeC
Q 019359 204 PDRQTLYWSATWPREVETLARQFLRNPYKVIIGS---LELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTE 280 (342)
Q Consensus 204 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~ 280 (342)
+....+.+|||+..+...+...-++.|....+.. .-...+..+..........-+...+...+... ...++|+|++
T Consensus 359 ~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~ 437 (620)
T KOG0350|consen 359 PPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVN 437 (620)
T ss_pred chhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEec
Confidence 2234778899988877788877788886555542 11233444455554555545555666666553 6789999999
Q ss_pred CchhHHHHHHHHH----hCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 281 TKKGCDQVTRQLR----MDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 281 ~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
+.+.+..++..|+ +...++..++|..+.+.|...++.|..|++.+|||++++++|||+.+|
T Consensus 438 S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v 502 (620)
T KOG0350|consen 438 SVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502 (620)
T ss_pred chHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccccc
Confidence 9999999999887 346778889999999999999999999999999999999999999886
No 47
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.2e-36 Score=273.80 Aligned_cols=317 Identities=13% Similarity=0.152 Sum_probs=210.6
Q ss_pred HHHHHhhhhcceeeeccCCCccccccccCCCCHHHHHHHHHcC--CCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHh
Q 019359 4 TEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLG--FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~ 81 (342)
+.+..++...++...-.+...+...+....+..++......-+ ...|+++|.+++..+..+++.++++|||+|||.++
T Consensus 67 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~ 146 (501)
T PHA02558 67 GQLKKFAKNRGYSIWVDPRIEENEDISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQ 146 (501)
T ss_pred HHHHHHHHhcCCeEecCcccccCCCCCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHH
Confidence 5667777777777744221111112221222233333222222 35899999999999999999999999999999875
Q ss_pred HHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH
Q 019359 82 LLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL 161 (342)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l 161 (342)
...+ ....... ..++||++|+++|+.||.+.+++++......+..+.++.... .+.+|+|+|++++
T Consensus 147 ~~l~-~~~~~~~------~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl 212 (501)
T PHA02558 147 YLLS-RYYLENY------EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSA 212 (501)
T ss_pred HHHH-HHHHhcC------CCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHH
Confidence 5432 2222211 337999999999999999999998765445555566654432 2478999999998
Q ss_pred HHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHH--HHHhcCCCeEEEecccc
Q 019359 162 IDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETL--ARQFLRNPYKVIIGSLE 239 (342)
Q Consensus 162 ~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~--~~~~~~~~~~~~~~~~~ 239 (342)
.+... ..+..++++|+||||++.+. .+..++..+++..+++++|||+.+..... ....+++. ...+....
T Consensus 213 ~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i-~~~v~~~~ 284 (501)
T PHA02558 213 VKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDI-FKPVTTSQ 284 (501)
T ss_pred hhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCCc-eEEecHHH
Confidence 76432 23567999999999998653 45566666666778999999986542211 11223321 11111100
Q ss_pred ccccc-------------------------ccceEE-EEechhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHH
Q 019359 240 LKANQ-------------------------SINQVV-EVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQL 292 (342)
Q Consensus 240 ~~~~~-------------------------~~~~~~-~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L 292 (342)
..... .+...+ .......+...+.+.+.... .+++++|||.+.+|++.+++.|
T Consensus 285 li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L 364 (501)
T PHA02558 285 LMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEML 364 (501)
T ss_pred HHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHH
Confidence 00000 000000 01112223333444443332 3678999999999999999999
Q ss_pred HhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe-cccccCCCCCCCC
Q 019359 293 RMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAARGLGRITVC 342 (342)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t-~~~~~Gidip~v~ 342 (342)
++.++++..+||+++.++|..+++.|++|+..||||| +++++|+|+|+|+
T Consensus 365 ~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 365 KKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 9999999999999999999999999999999999999 8999999999974
No 48
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.7e-36 Score=278.02 Aligned_cols=290 Identities=19% Similarity=0.190 Sum_probs=212.5
Q ss_pred HHHHHH-cCCCCCcHHHHhhHHHHhcCC-CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 019359 39 LEVIAK-LGFVEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (342)
Q Consensus 39 ~~~l~~-~~~~~l~~~Q~~~~~~~~~~~-~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~ 116 (342)
.+.+.+ .||. |+|+|.++++.++.|+ ++++.+|||+|||.++.+..+.. .... ....++++++|+++|+.|+
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~----~~~~rLv~~vPtReLa~Qi 78 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGA----KVPRRLVYVVNRRTVVDQV 78 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccc----cccceEEEeCchHHHHHHH
Confidence 344444 6886 9999999999999998 67888999999998654333322 1111 1123555677999999999
Q ss_pred HHHHHHhcCCC-----------------------CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHH-Hhcc----
Q 019359 117 QEEALKFGSRA-----------------------GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDM-LEAQ---- 168 (342)
Q Consensus 117 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~-~~~~---- 168 (342)
.+.+++++... ++.+..++||.+...++..+..+++|+|+|++.+.+- +.++
T Consensus 79 ~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~ 158 (844)
T TIGR02621 79 TEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCG 158 (844)
T ss_pred HHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccc
Confidence 99999887643 4889999999999899999989999999997655332 1100
Q ss_pred -------ccCCCCccEEEEeccchhhcCCChHHHHHHHhhc--CC---CccEEEEEeecCchHHHHHHHhcCCCeEEEec
Q 019359 169 -------HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RP---DRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (342)
Q Consensus 169 -------~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~---~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
...+..+.++|+|||| ++.+|...+..+.... ++ +.|+++||||++.+.......+..++....+.
T Consensus 159 ~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~ 236 (844)
T TIGR02621 159 FKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVL 236 (844)
T ss_pred cccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecc
Confidence 0025678999999999 6778999999998864 32 26999999999987777776777666655443
Q ss_pred ccccccccccceEEEEechhhHHHHHHHHHHhh--cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHH--
Q 019359 237 SLELKANQSINQVVEVVTEAEKYNRLIKLLKEV--MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERD-- 312 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~-- 312 (342)
..... ...+..+ .....+.+...+...+... ..++++|||||+++.++.+++.|++.++ ..+||++++.+|.
T Consensus 237 ~~~l~-a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~ 312 (844)
T TIGR02621 237 KKRLA-AKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDL 312 (844)
T ss_pred ccccc-ccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhH
Confidence 32211 1122222 2223333433333333221 2367899999999999999999998876 8999999999999
Q ss_pred ---HHHHHHhc----CC-------CCEEEEecccccCCCCCC
Q 019359 313 ---WVLAEFRS----GR-------SPIMTATDVAARGLGRIT 340 (342)
Q Consensus 313 ---~~~~~f~~----~~-------~~vlv~t~~~~~Gidip~ 340 (342)
.+++.|++ |+ ..|||||+++++|+|++.
T Consensus 313 ~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~ 354 (844)
T TIGR02621 313 VKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA 354 (844)
T ss_pred HHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc
Confidence 78999987 43 679999999999999975
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.7e-36 Score=290.24 Aligned_cols=283 Identities=20% Similarity=0.209 Sum_probs=214.9
Q ss_pred CHHHHHHHHHcCCCCCcHHHHhhHHHHhcC------CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC
Q 019359 35 PDYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (342)
Q Consensus 35 ~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~------~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p 108 (342)
+++..+...+++| .+++.|.++++.+..+ .++++++|||+|||.+++.+++..+.. +.+++|++|
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLvP 657 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLVP 657 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEeC
Confidence 3556667788999 8999999999998876 789999999999999888776665432 678999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhh---c-CCCcEEEeChHHHHHHHhccccCCCCccEEEEeccc
Q 019359 109 TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDL---R-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (342)
Q Consensus 109 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (342)
|++|+.|+.+.+++.....++.+..+.++.+..+....+ . ...+|+|+||+.+. ....+.+++++|+||+|
T Consensus 658 T~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 658 TTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEH 732 (1147)
T ss_pred cHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechh
Confidence 999999999999876555577888888776655543322 2 35899999996432 23456789999999999
Q ss_pred hhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHH
Q 019359 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIK 264 (342)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (342)
++ ++ .....+..++.+.+++++|||+.+....+....+.++..+...+.. ...+............ ...
T Consensus 733 rf---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~~---k~~ 801 (1147)
T PRK10689 733 RF---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSLVV---REA 801 (1147)
T ss_pred hc---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcHHH---HHH
Confidence 96 22 2234456667789999999998776666666666676655443321 1122222222221111 222
Q ss_pred HHHhhcCCCcEEEEeCCchhHHHHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 265 ~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.+.+...+++++|||++++.++.+++.|++. +.++..+||+|++.+|..++.+|++|+.+|||||+++++|+|+|+++
T Consensus 802 il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCC
Confidence 3334445789999999999999999999987 67899999999999999999999999999999999999999999985
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=7.4e-36 Score=278.66 Aligned_cols=282 Identities=22% Similarity=0.264 Sum_probs=204.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhHHHHhcC------CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc
Q 019359 36 DYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (342)
Q Consensus 36 ~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~------~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~ 109 (342)
..+......++| +|++.|.++++.+.++ .+.+++||||||||.+|+++++..+.. +.+++|++||
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaPT 319 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAPT 319 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecc
Confidence 344455667899 7999999999998876 379999999999999999998887654 6789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh---HHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 110 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
++|+.|+.+.++++....++++..++|+.+.... ...+.. .++|+|+|+..+.. ...+..++++|+||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 9999999999999988889999999998775333 333333 48999999976633 33467899999999998
Q ss_pred hhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHH
Q 019359 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKL 265 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (342)
+.. ..+..+.......++++||||+.+.... ...+++.....+...+. ....+...+. .. .....+.+.
T Consensus 395 fg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~-~r~~i~~~~~--~~-~~~~~~~~~ 463 (681)
T PRK10917 395 FGV-----EQRLALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPP-GRKPITTVVI--PD-SRRDEVYER 463 (681)
T ss_pred hhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCC-CCCCcEEEEe--Cc-ccHHHHHHH
Confidence 632 2222333334468899999998654322 22334333222221111 1111222221 11 222333344
Q ss_pred HHhh-cCCCcEEEEeCCch--------hHHHHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEeccccc
Q 019359 266 LKEV-MDGSRILIFTETKK--------GCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAAR 334 (342)
Q Consensus 266 l~~~-~~~~~~lvf~~~~~--------~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 334 (342)
+.+. ..+++++|||+.++ .++.+++.|.+. ++++..+||++++.+|..++++|++|+.+|||||+++++
T Consensus 464 i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 464 IREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 4333 34789999999654 456677777765 468999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 019359 335 GLGRITVC 342 (342)
Q Consensus 335 Gidip~v~ 342 (342)
|+|+|+++
T Consensus 544 GiDip~v~ 551 (681)
T PRK10917 544 GVDVPNAT 551 (681)
T ss_pred CcccCCCc
Confidence 99999974
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.6e-35 Score=286.52 Aligned_cols=277 Identities=23% Similarity=0.315 Sum_probs=205.0
Q ss_pred HHHHH-cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 019359 40 EVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (342)
Q Consensus 40 ~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~ 118 (342)
+.+.. .|+ .|+++|..+++.++.|++++++||||+|||. +.+++...+.. .+.+++|++||++|+.|+.+
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHH
Confidence 34433 577 8999999999999999999999999999996 44444433332 26789999999999999999
Q ss_pred HHHHhcCCCCeEEEEEecCCcc-----hhhHHhhc-CCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc----
Q 019359 119 EALKFGSRAGIRSTCIYGGAPK-----GPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD---- 188 (342)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~---- 188 (342)
.++.++...++.+..+.++... ......+. .+++|+|+||++|.+++. ......++++|+||||+++.
T Consensus 142 ~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~ 219 (1176)
T PRK09401 142 KLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKN 219 (1176)
T ss_pred HHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccc
Confidence 9999988888888777766432 22223333 358999999999998776 33445699999999999885
Q ss_pred -------CCCh-HHHHHHHhhcCC------------------------CccEEEEEeecCch-HHHHHHHhcCCCeEEEe
Q 019359 189 -------MGFE-PQIRKIVTQIRP------------------------DRQTLYWSATWPRE-VETLARQFLRNPYKVII 235 (342)
Q Consensus 189 -------~~~~-~~~~~~~~~~~~------------------------~~~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~ 235 (342)
.||. ..+..++..++. ..|++++|||+++. ... .++..+..+.+
T Consensus 220 id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v 296 (1176)
T PRK09401 220 IDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEV 296 (1176)
T ss_pred hhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEe
Confidence 4564 456666655543 67899999999753 322 22333333433
Q ss_pred cccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchh---HHHHHHHHHhCCCCcEeecCCCCHHHHH
Q 019359 236 GSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKG---CDQVTRQLRMDGWPALSIHGDKNQSERD 312 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 312 (342)
..... ....+...+.... ++...+.+++... +.++||||++.+. ++.+++.|++.|+++..+||++ .
T Consensus 297 ~~~~~-~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~ 366 (1176)
T PRK09401 297 GSPVF-YLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----E 366 (1176)
T ss_pred cCccc-ccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----H
Confidence 33221 1222333333332 4556677776554 4689999999888 9999999999999999999999 2
Q ss_pred HHHHHHhcCCCCEEEE----ecccccCCCCCC
Q 019359 313 WVLAEFRSGRSPIMTA----TDVAARGLGRIT 340 (342)
Q Consensus 313 ~~~~~f~~~~~~vlv~----t~~~~~Gidip~ 340 (342)
..+++|++|+.+|||| |+++++|||+|+
T Consensus 367 ~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~ 398 (1176)
T PRK09401 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPE 398 (1176)
T ss_pred HHHHHHHCCCCCEEEEecCCCCceeecCCCCc
Confidence 3459999999999999 589999999999
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-35 Score=251.61 Aligned_cols=288 Identities=23% Similarity=0.226 Sum_probs=209.4
Q ss_pred CCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 46 ~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
+..++|.||..+....+.+ |.|++.|||.|||+++++.+..++.+.+ + ++|+++||+.|+.|..+.++++..
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------G-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC------C-eEEEecCCchHHHHHHHHHHHHhC
Confidence 4458899999998876555 8999999999999999998888887753 3 899999999999999999999877
Q ss_pred CCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCC
Q 019359 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD 205 (342)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~ 205 (342)
...-.+..+.|.....+....+. ..+|+|+||+.+.+-+..+.+++.+++++|+||||+.....-...+...+-...++
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred CChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 66677888888877765555554 47999999999999999999999999999999999865443233333334444567
Q ss_pred ccEEEEEeecCchHHHHHHHh--cC-CCeEEEecccccccc---------------------------------------
Q 019359 206 RQTLYWSATWPREVETLARQF--LR-NPYKVIIGSLELKAN--------------------------------------- 243 (342)
Q Consensus 206 ~~~i~~SaT~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~--------------------------------------- 243 (342)
+.++++||||..+.+....-. ++ ....+....+..-.+
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 789999999877765544321 11 100000000000000
Q ss_pred ------c---------cc--ceE---------------------------------------------------------
Q 019359 244 ------Q---------SI--NQV--------------------------------------------------------- 249 (342)
Q Consensus 244 ------~---------~~--~~~--------------------------------------------------------- 249 (342)
. .. ...
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 0 00 000
Q ss_pred ------------------EEEechhhHHHHHHHHHHhhc---CCCcEEEEeCCchhHHHHHHHHHhCCCCcE-eecC---
Q 019359 250 ------------------VEVVTEAEKYNRLIKLLKEVM---DGSRILIFTETKKGCDQVTRQLRMDGWPAL-SIHG--- 304 (342)
Q Consensus 250 ------------------~~~~~~~~~~~~l~~~l~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~-~~~~--- 304 (342)
........|...+.+++.+.. .+.++|||++.+.+|+.+.+.|.+.++.+. .+-|
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 000001123333444444433 256999999999999999999999988774 3333
Q ss_pred -----CCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 305 -----DKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 305 -----~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+|+++++.++++.|+.|+++|||||+++++|+|+|++.
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vD 445 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVD 445 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCccc
Confidence 69999999999999999999999999999999999973
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5e-35 Score=271.49 Aligned_cols=283 Identities=21% Similarity=0.275 Sum_probs=203.3
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhHHHHhcC------CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc
Q 019359 36 DYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (342)
Q Consensus 36 ~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~------~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~ 109 (342)
..+.+.+...+| +|++.|+++++.+..+ .+.+++||||+|||.+|+++++..+.. +.+++|++|+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT 293 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPT 293 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCH
Confidence 445567788999 8999999999998765 368999999999999999888887654 6679999999
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh---HHhhc-CCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 110 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
++|+.|+.+.++++....++++..++|+...... ...+. ...+|+|+|+..+.+ ...+..++++|+||+|+
T Consensus 294 ~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhh
Confidence 9999999999999988889999999998765542 22333 347999999976643 23467799999999998
Q ss_pred hhcCCChHHHHHHHhhcC--CCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHH
Q 019359 186 MLDMGFEPQIRKIVTQIR--PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLI 263 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~--~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 263 (342)
+... ....+..... ...++++||||+.+....+ ..+++.....+...+.. ...+...+ ..... ...+.
T Consensus 369 fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~-r~~i~~~~--~~~~~-~~~~~ 438 (630)
T TIGR00643 369 FGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPG-RKPITTVL--IKHDE-KDIVY 438 (630)
T ss_pred ccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCC-CCceEEEE--eCcch-HHHHH
Confidence 5322 1122222222 2578999999986543222 22232222122111111 11111111 22222 24444
Q ss_pred HHHHhh-cCCCcEEEEeCCch--------hHHHHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019359 264 KLLKEV-MDGSRILIFTETKK--------GCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 332 (342)
Q Consensus 264 ~~l~~~-~~~~~~lvf~~~~~--------~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 332 (342)
..+.+. ..+++++|||+..+ .++.+++.|.+. ++++..+||++++++|..+++.|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 445443 34789999999764 456677777753 6789999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 019359 333 ARGLGRITVC 342 (342)
Q Consensus 333 ~~Gidip~v~ 342 (342)
++|+|+|+++
T Consensus 519 e~GvDiP~v~ 528 (630)
T TIGR00643 519 EVGVDVPNAT 528 (630)
T ss_pred ecCcccCCCc
Confidence 9999999975
No 54
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=267.50 Aligned_cols=297 Identities=22% Similarity=0.267 Sum_probs=228.6
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhhHHHHh-cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcH
Q 019359 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (342)
Q Consensus 32 ~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~-~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~ 110 (342)
..+++.+.+.+...++.++.+.|+.++.... .++|+++++|||+|||++++++++..+.+. +.+++++||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 3478888889999999999999999987654 459999999999999999999999988874 56799999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC
Q 019359 111 ELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG 190 (342)
Q Consensus 111 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~ 190 (342)
+|+.+..++++++ ...|+++...+|+...... ...+++|+|+||+++.....+....+..++++|+||+|.+.+..
T Consensus 87 ALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 87 ALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 9999999999944 4469999999998876553 22358999999999998888777677889999999999988776
Q ss_pred ChHHHHHHHhhcC---CCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEech-------hhHHH
Q 019359 191 FEPQIRKIVTQIR---PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE-------AEKYN 260 (342)
Q Consensus 191 ~~~~~~~~~~~~~---~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 260 (342)
.++.+..+..... ...|++++|||++.. ..+..+.-..+......+.+..........+..... .....
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 6766666655543 347999999998765 345554444444323333332222222222222221 12344
Q ss_pred HHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC-------------------------------------CCCcEeec
Q 019359 261 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD-------------------------------------GWPALSIH 303 (342)
Q Consensus 261 ~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~ 303 (342)
.+...+....++++++|||++++.+...++.|... ...+..+|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 44555555556899999999999999999888730 01256899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 304 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 304 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
++++.++|..+.+.|+.|.++||+||+.++.|+|+|.
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA 358 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPA 358 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcc
Confidence 9999999999999999999999999999999999995
No 55
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.1e-33 Score=279.18 Aligned_cols=284 Identities=22% Similarity=0.254 Sum_probs=207.6
Q ss_pred HHHHHHHH-cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHH
Q 019359 37 YCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (342)
Q Consensus 37 ~~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q 115 (342)
+..+.++. +|| .|++.|..+++.++.|+++++.||||+|||+.++++++.... .+.+++|++|+++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 44555655 899 799999999999999999999999999999855544443321 16689999999999999
Q ss_pred HHHHHHHhcCCC--CeEEEEEecCCcchhhH---HhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc-
Q 019359 116 IQEEALKFGSRA--GIRSTCIYGGAPKGPQI---RDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD- 188 (342)
Q Consensus 116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~- 188 (342)
+.+.++.++... ++.+..++|+.+..... ..+.. .++|+|+||+.+...+... .. ..++++|+||||.++.
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~~-~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-KH-LKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-hh-CCCCEEEEECceecccc
Confidence 999999987654 46667788887655442 33444 4899999999988765542 12 5689999999999875
Q ss_pred ----------CCChHHHHH----HHh----------------------hcCCCcc-EEEEEeecCchHHHHHHHhcCCCe
Q 019359 189 ----------MGFEPQIRK----IVT----------------------QIRPDRQ-TLYWSATWPREVETLARQFLRNPY 231 (342)
Q Consensus 189 ----------~~~~~~~~~----~~~----------------------~~~~~~~-~i~~SaT~~~~~~~~~~~~~~~~~ 231 (342)
.+|.+.+.. ++. .+++..+ .+.+|||++... ....++..+.
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l 293 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELL 293 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCe
Confidence 367666653 221 2234445 567899987531 1123345555
Q ss_pred EEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchh---HHHHHHHHHhCCCCcEeecCCCCH
Q 019359 232 KVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKG---CDQVTRQLRMDGWPALSIHGDKNQ 308 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~ 308 (342)
.+.+.... .....+...+.......+ ..+.++++.. +..+||||++++. |+.+++.|.+.|+++..+||+
T Consensus 294 ~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 294 GFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 55554432 222333344433333333 5677777664 5789999999876 589999999999999999994
Q ss_pred HHHHHHHHHHhcCCCCEEEEe----cccccCCCCCC-CC
Q 019359 309 SERDWVLAEFRSGRSPIMTAT----DVAARGLGRIT-VC 342 (342)
Q Consensus 309 ~~r~~~~~~f~~~~~~vlv~t----~~~~~Gidip~-v~ 342 (342)
|...++.|++|+++||||| +++++|||+|+ |+
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vr 403 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIR 403 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccC
Confidence 8899999999999999999 58999999998 54
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.1e-34 Score=251.38 Aligned_cols=283 Identities=21% Similarity=0.306 Sum_probs=215.2
Q ss_pred HHHHHH-cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 019359 39 LEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (342)
Q Consensus 39 ~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~ 117 (342)
...|+. +|+..+++.|.+++..++.++++++.+|||.|||++|.+|++-. ..-+|||+|..+|.....
T Consensus 6 ~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 6 QQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred HHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHH
Confidence 344554 89999999999999999999999999999999999999998766 235899999999999888
Q ss_pred HHHHHhcCCCCeEEEEEecCCcchhh---HHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC--C
Q 019359 118 EEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG--F 191 (342)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~--~ 191 (342)
+.+++. |+....+.+.-+..+. ...+.. ..++++.+|+++..-...+.+.-..+.+++|||||.+..|| |
T Consensus 75 ~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdF 150 (590)
T COG0514 75 DQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDF 150 (590)
T ss_pred HHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCcc
Confidence 888884 6777777766444333 222333 37999999999864322222224568899999999999997 8
Q ss_pred hHHHHHHH---hhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHh
Q 019359 192 EPQIRKIV---TQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE 268 (342)
Q Consensus 192 ~~~~~~~~---~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 268 (342)
++.+..+- ..++ +..++++|||..+.+...+...+.......+..+..+++-.+...-. .+...+.. ++..
T Consensus 151 RP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~-~~~~~q~~----fi~~ 224 (590)
T COG0514 151 RPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEK-GEPSDQLA----FLAT 224 (590)
T ss_pred CHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhc-ccHHHHHH----HHHh
Confidence 88887763 4444 78999999999888877776655544332222222222222221111 12222322 4442
Q ss_pred --hcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 269 --VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 269 --~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
...++..||||.|++.++.+++.|...|+++..||++++..+|....++|..++.+|+|||.++++|||.||||
T Consensus 225 ~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 225 VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCce
Confidence 22356689999999999999999999999999999999999999999999999999999999999999999986
No 57
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=241.44 Aligned_cols=302 Identities=22% Similarity=0.269 Sum_probs=234.7
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHH-HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceE
Q 019359 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (342)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~v 103 (342)
+..+.+++++++.+...++..|+.++.|.|.-++.. ++.|+|.++..+|+||||++.-++-+..+... +.+.
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~Km 264 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKM 264 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeE
Confidence 334567789999999999999999999999999986 78999999999999999999888877777663 7789
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh----HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEE
Q 019359 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ----IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLV 179 (342)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 179 (342)
|+++|..+|++|-++.|++-...+++.+..-.|....... .......+||||+|++.+-.++..+ ..+.+++.+|
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVV 343 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVV 343 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEE
Confidence 9999999999999988876445567766544443222211 1222335899999999998877776 5578899999
Q ss_pred EeccchhhcCCChHHHHHH---HhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechh
Q 019359 180 LDEADRMLDMGFEPQIRKI---VTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEA 256 (342)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~---~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (342)
+||+|.+.+...++.+..+ +..+-+..|.|++|||..... .++..+-.....+.- ++.+.-.+.+...+..
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~ 417 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLGAKLVLYDE-----RPVPLERHLVFARNES 417 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhCCeeEeecC-----CCCChhHeeeeecCch
Confidence 9999998776655554444 333446899999999986543 444444433333222 2222223344444577
Q ss_pred hHHHHHHHHHHhhcC-------CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019359 257 EKYNRLIKLLKEVMD-------GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 329 (342)
Q Consensus 257 ~~~~~l~~~l~~~~~-------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 329 (342)
+|.+.+..+.+.-.. .+++|||++|++.+..+++.|...|+++..||++++-.+|..+...|..+++.++|+|
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 777777777665332 4689999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCC
Q 019359 330 DVAARGLGRIT 340 (342)
Q Consensus 330 ~~~~~Gidip~ 340 (342)
.+++.|+|+|.
T Consensus 498 AAL~AGVDFPA 508 (830)
T COG1202 498 AALAAGVDFPA 508 (830)
T ss_pred hhhhcCCCCch
Confidence 99999999995
No 58
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3e-33 Score=271.09 Aligned_cols=279 Identities=21% Similarity=0.312 Sum_probs=198.8
Q ss_pred HHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 019359 39 LEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (342)
Q Consensus 39 ~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~ 118 (342)
.+.+.......|+++|..+++.++.|++++++||||+|||. +.+++...+.. .+.+++|++||++|+.|+.+
T Consensus 68 ~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 68 EEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHHH
Confidence 34444433348999999999999999999999999999997 45555444432 16789999999999999999
Q ss_pred HHHHhcCCCCeEEE---EEecCCcchhh---HHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc---
Q 019359 119 EALKFGSRAGIRST---CIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD--- 188 (342)
Q Consensus 119 ~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~--- 188 (342)
.++.++...++.+. .++|+.+.... ...+.+ +++|+|+||+.|.+.+.... . .++++|+||||.+++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k 216 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASK 216 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccc
Confidence 99999877665543 35677655433 223333 48999999999988766422 1 799999999999987
Q ss_pred --------CCChHH-HHHHH----------------------hhcCCCcc--EEEEEee-cCchHHHHHHHhcCCCeEEE
Q 019359 189 --------MGFEPQ-IRKIV----------------------TQIRPDRQ--TLYWSAT-WPREVETLARQFLRNPYKVI 234 (342)
Q Consensus 189 --------~~~~~~-~~~~~----------------------~~~~~~~~--~i~~SaT-~~~~~~~~~~~~~~~~~~~~ 234 (342)
.||... +..++ +..+...| ++++||| .+..... .++.+...+.
T Consensus 217 ~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~ 293 (1171)
T TIGR01054 217 NVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFE 293 (1171)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceE
Confidence 456543 33322 22333444 5678999 4544332 2334444444
Q ss_pred ecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCc---hhHHHHHHHHHhCCCCcEeecCCCCHHHH
Q 019359 235 IGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETK---KGCDQVTRQLRMDGWPALSIHGDKNQSER 311 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 311 (342)
+..... ....+...+..... +...+.++++.. +.++||||+++ +.|+.+++.|++.|+++..+||+++
T Consensus 294 v~~~~~-~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~---- 364 (1171)
T TIGR01054 294 VGGGSD-TLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP---- 364 (1171)
T ss_pred ecCccc-cccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----
Confidence 433221 12223333322222 234566666554 57899999999 9999999999999999999999997
Q ss_pred HHHHHHHhcCCCCEEEEe----cccccCCCCCC
Q 019359 312 DWVLAEFRSGRSPIMTAT----DVAARGLGRIT 340 (342)
Q Consensus 312 ~~~~~~f~~~~~~vlv~t----~~~~~Gidip~ 340 (342)
...++.|++|+++||||| +++++|||+|+
T Consensus 365 ~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~ 397 (1171)
T TIGR01054 365 KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPE 397 (1171)
T ss_pred HHHHHHHHcCCCCEEEEeccccCcccccCCCCc
Confidence 368999999999999995 89999999999
No 59
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.9e-33 Score=271.09 Aligned_cols=271 Identities=22% Similarity=0.267 Sum_probs=193.5
Q ss_pred EEcCCCCchhhHhHHHHHHhhhcCCCc-----cCCCCceEEEEcCcHHHHHHHHHHHHH----hc--------CCCCeEE
Q 019359 69 GIAETGSGKTLSYLLPAFVHVSAQPRL-----VQGEGPIVLVLAPTRELAVQIQEEALK----FG--------SRAGIRS 131 (342)
Q Consensus 69 ~~~~tG~GKT~~~~~~~~~~~~~~~~~-----~~~~~~~vlil~p~~~l~~q~~~~~~~----~~--------~~~~~~~ 131 (342)
|++|||||||++|.++++..+...... ....+.++|||+|+++|+.|+.+.++. ++ ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 479999999999999999888754211 112367999999999999999988764 21 1247888
Q ss_pred EEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccc-cCCCCccEEEEeccchhhcCCCh----HHHHHHHhhcCCCc
Q 019359 132 TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-TNLRRVTYLVLDEADRMLDMGFE----PQIRKIVTQIRPDR 206 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIvDE~h~~~~~~~~----~~~~~~~~~~~~~~ 206 (342)
...+|+.+..+....+.+.++|+|+||+++..++.+.. ..++.+++|||||+|.+.+..++ ..+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999998877776777789999999999988766432 35788999999999999865444 34555555566778
Q ss_pred cEEEEEeecCchHHHHHHHhcCC-CeEEEecccccccccccceEEEEech------------------hhH-HHHH-HHH
Q 019359 207 QTLYWSATWPREVETLARQFLRN-PYKVIIGSLELKANQSINQVVEVVTE------------------AEK-YNRL-IKL 265 (342)
Q Consensus 207 ~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~l-~~~ 265 (342)
|+|++|||+.+. +.+...+.+. +..+.. ... .....+...+..... ... ...+ ..+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~-~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPA-MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCC-CcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999763 4454433332 333322 111 111111111111000 000 0111 233
Q ss_pred HHhhcCCCcEEEEeCCchhHHHHHHHHHhCC---------------------------------CCcEeecCCCCHHHHH
Q 019359 266 LKEVMDGSRILIFTETKKGCDQVTRQLRMDG---------------------------------WPALSIHGDKNQSERD 312 (342)
Q Consensus 266 l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~~~r~ 312 (342)
+.....++++||||||++.|+.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 3334457889999999999999999997531 1256789999999999
Q ss_pred HHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 313 WVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 313 ~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.+++.|++|++++||||+.++.|||+|+|.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VD 347 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVD 347 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCC
Confidence 999999999999999999999999999874
No 60
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1e-32 Score=247.41 Aligned_cols=288 Identities=25% Similarity=0.241 Sum_probs=204.1
Q ss_pred CCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 46 ~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
+.-.+|.||.+++...+ ++|+++++|||+|||++++..+..++.+.+ ..++++++|++.|+.|....++.++.
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccC
Confidence 34489999999999888 999999999999999999999999998876 57899999999999999988888766
Q ss_pred CCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccC-CCCccEEEEeccchhhcCC-ChHHHHHHHhhcC
Q 019359 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN-LRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIR 203 (342)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~ 203 (342)
. .......++.........+....+|+|.||+.+.+-+.+...+ ++.+.++||||||+..... |...++..+....
T Consensus 132 ~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred c--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 5 5566666665544455556667899999999998887776554 5889999999999876433 5555545555544
Q ss_pred CCccEEEEEeecCchHHHHHHHhcCCCeEEEe------------------------------------------------
Q 019359 204 PDRQTLYWSATWPREVETLARQFLRNPYKVII------------------------------------------------ 235 (342)
Q Consensus 204 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 235 (342)
...|+|++||||....+....-......-..+
T Consensus 210 ~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~ 289 (746)
T KOG0354|consen 210 QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEE 289 (746)
T ss_pred ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhc
Confidence 55599999999876654433321110000000
Q ss_pred -----c----cccc-------------ccccc--------------------cc---------eEEE-------------
Q 019359 236 -----G----SLEL-------------KANQS--------------------IN---------QVVE------------- 251 (342)
Q Consensus 236 -----~----~~~~-------------~~~~~--------------------~~---------~~~~------------- 251 (342)
. .... ..+.. +. .+..
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 290 GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 0 0000 00000 00 0000
Q ss_pred --------------------EechhhHHHHHHHHHHhhc---CCCcEEEEeCCchhHHHHHHHHHh---CCCCcEeecC-
Q 019359 252 --------------------VVTEAEKYNRLIKLLKEVM---DGSRILIFTETKKGCDQVTRQLRM---DGWPALSIHG- 304 (342)
Q Consensus 252 --------------------~~~~~~~~~~l~~~l~~~~---~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~- 304 (342)
......++..+.+.+.+.. +..++||||.+++.|..|..+|.. .|++..++.|
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 0001233344444443332 256899999999999999999983 3455555555
Q ss_pred -------CCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 305 -------DKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 305 -------~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+|++.++..+++.|++|+++|||||++++||+|||+++
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~ 494 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECN 494 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCccccc
Confidence 79999999999999999999999999999999999875
No 61
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=8.2e-32 Score=217.68 Aligned_cols=202 Identities=54% Similarity=0.875 Sum_probs=180.2
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC
Q 019359 29 FQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (342)
Q Consensus 29 ~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p 108 (342)
|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+..... ..+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~---~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK---KDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc---cCCceEEEEcC
Confidence 788999999999999999999999999999999999999999999999999999999988877521 12678999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc
Q 019359 109 TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 109 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (342)
+++|+.|+.+.++.+....++.+..+.|+.........+..+++|+|+|++.+...+......+..++++|+||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778899999998887776666666789999999999998888777788899999999999888
Q ss_pred CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEE
Q 019359 189 MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKV 233 (342)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 233 (342)
.++...+..+...++..++++++|||+++....+...++.+++.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 888888999988888899999999999998888888888877654
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=4.4e-32 Score=238.05 Aligned_cols=264 Identities=18% Similarity=0.155 Sum_probs=174.9
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcc-----
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK----- 140 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~----- 140 (342)
++++.+|||+|||.+++.+++..+... .+.+++|++|+++|+.|+.+.+..+... ....++++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 478999999999999999988775432 2568999999999999999999885321 22333332210
Q ss_pred ------hhh-HHhh------cCCCcEEEeChHHHHHHHhcccc----C--CCCccEEEEeccchhhcCCChHHHHHHHhh
Q 019359 141 ------GPQ-IRDL------RRGVEIVIATPGRLIDMLEAQHT----N--LRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (342)
Q Consensus 141 ------~~~-~~~~------~~~~~iiv~T~~~l~~~~~~~~~----~--~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (342)
... .... ....+++++||+++...+..... . .-..+++|+||+|.+...++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 000 0000 11367999999999877655211 0 1124789999999987654333 4444443
Q ss_pred c-CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeC
Q 019359 202 I-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTE 280 (342)
Q Consensus 202 ~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~ 280 (342)
+ ..+.|++++|||++..+..+.......+...........................+...+..+++....++++||||+
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 3 346899999999987665555443322111111100000000001111111122344455555555445789999999
Q ss_pred CchhHHHHHHHHHhCCC--CcEeecCCCCHHHHHHH----HHHHhcCCCCEEEEecccccCCCCC
Q 019359 281 TKKGCDQVTRQLRMDGW--PALSIHGDKNQSERDWV----LAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 281 ~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~----~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
++++++.+++.|++.+. .+..+||++++.+|... ++.|++|+..|||||+++++|+|+|
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~ 295 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS 295 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC
Confidence 99999999999988766 48999999999998764 8899999999999999999999997
No 63
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.9e-31 Score=235.97 Aligned_cols=280 Identities=23% Similarity=0.281 Sum_probs=213.6
Q ss_pred HHHHHHHcCCCCCcHHHHhhHHHHhcC------CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHH
Q 019359 38 CLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (342)
Q Consensus 38 ~~~~l~~~~~~~l~~~Q~~~~~~~~~~------~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~ 111 (342)
+.+.+.+.+| +|+..|++++..|... -+-|++|..|||||.+++++++..+.. |.++.+++||.-
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAPTEI 322 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAPTEI 322 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEeccHHH
Confidence 4455678899 9999999999998753 367999999999999999998888776 778999999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEecCCcchhh---HHhhcCC-CcEEEeChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 112 LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 112 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
||.|.++.+.++....++++..+.|....... ...+.++ .+++|+|. .+.+....+..+.++|+||-|++
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQHRF- 396 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQHRF- 396 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEeccccc-
Confidence 99999999999999999999999887654443 3334444 89999994 45566667888999999999994
Q ss_pred cCCChHHHHHHHhhcCC-CccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHH
Q 019359 188 DMGFEPQIRKIVTQIRP-DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLL 266 (342)
Q Consensus 188 ~~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 266 (342)
+-.-+..+..... .+.++.|||||-+. .++-..+++.....+..-+....+....++.. ++...+.+.+
T Consensus 397 ----GV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i~~----~~~~~v~e~i 466 (677)
T COG1200 397 ----GVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVIPH----ERRPEVYERI 466 (677)
T ss_pred ----cHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEecc----ccHHHHHHHH
Confidence 5444555555555 68999999998553 45556677766655554433333333333322 2333333334
Q ss_pred H-hhcCCCcEEEEeCCchhHH--------HHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccC
Q 019359 267 K-EVMDGSRILIFTETKKGCD--------QVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARG 335 (342)
Q Consensus 267 ~-~~~~~~~~lvf~~~~~~~~--------~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~G 335 (342)
+ +...|+++.+.|+-+++.+ ..+..|+.. +.++..+||.|++++++.++++|++|+++|||||.+++.|
T Consensus 467 ~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVG 546 (677)
T COG1200 467 REEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVG 546 (677)
T ss_pred HHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEec
Confidence 3 3345899999999877654 455666643 5669999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 019359 336 LGRITVC 342 (342)
Q Consensus 336 idip~v~ 342 (342)
+|+|+.+
T Consensus 547 VdVPnAT 553 (677)
T COG1200 547 VDVPNAT 553 (677)
T ss_pred ccCCCCe
Confidence 9999863
No 64
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-31 Score=244.36 Aligned_cols=267 Identities=17% Similarity=0.176 Sum_probs=180.2
Q ss_pred CCcHHHHhhHHHHhc-C--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 49 EPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~-~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
.|||||.+++..+.. + ++.++++|||+|||++++..+... +.++|||||+..|+.||.+++.+|..
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 689999999988764 3 478999999999999877554332 34599999999999999999999865
Q ss_pred CCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc--------cccCCCCccEEEEeccchhhcCCChHHHHH
Q 019359 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA--------QHTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (342)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (342)
.....+..+.|+.... ......|+|+|++++.....+ ..+.-..+++||+||||++.+ ..+..
T Consensus 324 l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~ 394 (732)
T TIGR00603 324 IDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRR 394 (732)
T ss_pred CCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHH
Confidence 4445666666653321 112368999999987532111 112224689999999999844 34455
Q ss_pred HHhhcCCCccEEEEEeecCchHHH--HHHHhcCCCeEEEecccccccccccc------eEEE------------------
Q 019359 198 IVTQIRPDRQTLYWSATWPREVET--LARQFLRNPYKVIIGSLELKANQSIN------QVVE------------------ 251 (342)
Q Consensus 198 ~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~------------------ 251 (342)
+...++ ....+++||||.+.... ....+++.. .+...-.+......+. .+..
T Consensus 395 il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~-vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 395 VLTIVQ-AHCKLGLTATLVREDDKITDLNFLIGPK-LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HHHhcC-cCcEEEEeecCcccCCchhhhhhhcCCe-eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 555553 45789999998643222 222333322 2222111100000000 0000
Q ss_pred --EechhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcC-CCCEEE
Q 019359 252 --VVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG-RSPIMT 327 (342)
Q Consensus 252 --~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv 327 (342)
......+...+..+++.+. .++++||||++..+++.+++.|. +..+||+++..+|..+++.|+.| .+++||
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 0112234444445555442 57899999999999999999883 46689999999999999999875 789999
Q ss_pred EecccccCCCCCCCC
Q 019359 328 ATDVAARGLGRITVC 342 (342)
Q Consensus 328 ~t~~~~~Gidip~v~ 342 (342)
+|+++++|||+|+++
T Consensus 548 ~SkVgdeGIDlP~a~ 562 (732)
T TIGR00603 548 LSKVGDTSIDLPEAN 562 (732)
T ss_pred EecccccccCCCCCC
Confidence 999999999999975
No 65
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8.6e-31 Score=245.72 Aligned_cols=268 Identities=18% Similarity=0.215 Sum_probs=194.3
Q ss_pred HHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhcCCCCeEE
Q 019359 53 IQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGIRS 131 (342)
Q Consensus 53 ~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~-~~~~~~~~~~ 131 (342)
+-.+++..+.++++++++|+||+|||+.+..+++..... +.+++|+.|++.++.|..+.+. .++...+..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~--------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI--------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc--------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 345667778888999999999999999988888876521 4589999999999999999875 4444445555
Q ss_pred EEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch-hhcCCChH-HHHHHHhhcCCCccEE
Q 019359 132 TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR-MLDMGFEP-QIRKIVTQIRPDRQTL 209 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~-~~~~~~~~-~~~~~~~~~~~~~~~i 209 (342)
......... .....+|+|+|++.|++.+... ..+..+++||+||+|. .++.++.- .+..+...++++.+++
T Consensus 78 Gy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGENK------VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEccccc------cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 443333221 1234789999999999988763 4678999999999994 56555443 3344555667789999
Q ss_pred EEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHH-HHHHHHHHhhc--CCCcEEEEeCCchhHH
Q 019359 210 YWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY-NRLIKLLKEVM--DGSRILIFTETKKGCD 286 (342)
Q Consensus 210 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~--~~~~~lvf~~~~~~~~ 286 (342)
+||||++... ...+++++..+..... ...+...+......++. ..+...+.... .++++|||+++.++++
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGR----SFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIR 223 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCc----ceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 9999997642 3456655444433221 11123333222222221 12222222221 2578999999999999
Q ss_pred HHHHHHHh---CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 287 QVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 287 ~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.+++.|++ .++.+..+||+++.++|..+++.|.+|+.+|||||+++++|||+|+|+
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~ 282 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIR 282 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCce
Confidence 99999987 478899999999999999999999999999999999999999999984
No 66
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-31 Score=237.20 Aligned_cols=269 Identities=20% Similarity=0.207 Sum_probs=180.0
Q ss_pred CCcHHHHhhHHHHhc----CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~----~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|+++|++++..+.+ .+..++++|||+|||.+++..+... ..++|||||+.+|+.||.+.+.++.
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 799999999999888 8899999999999999866655443 3349999999999999988777754
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCC
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (342)
... ..+..+.++...... ..|+|+|++++.+..........++++||+||||++.+..+. .+.+.+..
T Consensus 105 ~~~-~~~g~~~~~~~~~~~-------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~~ 172 (442)
T COG1061 105 LLN-DEIGIYGGGEKELEP-------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLSA 172 (442)
T ss_pred CCc-cccceecCceeccCC-------CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhhc
Confidence 332 123333333222111 369999999998752111222347999999999998655433 33333332
Q ss_pred CccEEEEEeecCchHH---HHHHHhcCCCeEEEeccccccc-----ccccceEEE-------------------------
Q 019359 205 DRQTLYWSATWPREVE---TLARQFLRNPYKVIIGSLELKA-----NQSINQVVE------------------------- 251 (342)
Q Consensus 205 ~~~~i~~SaT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------------------- 251 (342)
...++++||||++... ......++ +..+.....+... +..+.....
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 2228999999764431 11122222 2222222111100 000000000
Q ss_pred -----------EechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhc
Q 019359 252 -----------VVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 320 (342)
Q Consensus 252 -----------~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (342)
......+...+...+..+..+.+++|||.+..+++.++..+...++ +..++++++..+|..+++.|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 0011122222333333322467999999999999999999998887 8899999999999999999999
Q ss_pred CCCCEEEEecccccCCCCCCCC
Q 019359 321 GRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 321 ~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|++++|+++.++.+|+|+|+++
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~ 352 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDAD 352 (442)
T ss_pred CCCCEEEEeeeccceecCCCCc
Confidence 9999999999999999999974
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.8e-30 Score=225.44 Aligned_cols=271 Identities=15% Similarity=0.113 Sum_probs=179.1
Q ss_pred HHHhhHHHHhcCCC--EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC----C
Q 019359 53 IQAQGWPMALKGRD--LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS----R 126 (342)
Q Consensus 53 ~Q~~~~~~~~~~~~--~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~----~ 126 (342)
+|.++++.+..+.+ +++.+|||+|||.+++++++.. +.++++++|+++|+.|+.+.++.+.. .
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999988864 7889999999999998887742 34589999999999999998887653 2
Q ss_pred CCeEEEEEecCCcch--hhH------------------HhhcCCCcEEEeChHHHHHHHhcc----c-c---CCCCccEE
Q 019359 127 AGIRSTCIYGGAPKG--PQI------------------RDLRRGVEIVIATPGRLIDMLEAQ----H-T---NLRRVTYL 178 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~--~~~------------------~~~~~~~~iiv~T~~~l~~~~~~~----~-~---~~~~~~~i 178 (342)
.+..+..+.|..... ... ......+.+++|||+.+..++... . . .+..++++
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 345555555542211 000 001235789999999887654321 1 0 14679999
Q ss_pred EEeccchhhcCCC-----hHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHh--cCCCeEEEeccccc---------cc
Q 019359 179 VLDEADRMLDMGF-----EPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF--LRNPYKVIIGSLEL---------KA 242 (342)
Q Consensus 179 IvDE~h~~~~~~~-----~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~ 242 (342)
|+||+|.+..... ......+........+++++|||++..+...+... .+.+.......... ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 9999998654321 11222233333335799999999988776666654 44443332222000 00
Q ss_pred c--------cccceEEEEechhhH---HHHHHHHHHhhc---CCCcEEEEeCCchhHHHHHHHHHhCC--CCcEeecCCC
Q 019359 243 N--------QSINQVVEVVTEAEK---YNRLIKLLKEVM---DGSRILIFTETKKGCDQVTRQLRMDG--WPALSIHGDK 306 (342)
Q Consensus 243 ~--------~~~~~~~~~~~~~~~---~~~l~~~l~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~ 306 (342)
. +.+...+.. ....+ ...+.+.+.+.. +++++||||+++++++.+++.|++.+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 122222222 22222 233333333222 46799999999999999999999864 5678899999
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 307 NQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 307 ~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
++.+|... ++.+|||||+++++|+|+|.+
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~ 337 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD 337 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc
Confidence 98887643 478999999999999999875
No 68
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.1e-31 Score=240.74 Aligned_cols=273 Identities=19% Similarity=0.210 Sum_probs=188.5
Q ss_pred HHHHhhHHHHhcCCCEEEEcCCCCchhhH---------hHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 52 PIQAQGWPMALKGRDLIGIAETGSGKTLS---------YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 52 ~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~---------~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
..|.++++.+.++++++++|+||+|||.. |+++.+..+..-. ......++++++|+++|+.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 36889999999999999999999999976 2233333332100 011256899999999999999988876
Q ss_pred hcCC---CCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHH
Q 019359 123 FGSR---AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 199 (342)
Q Consensus 123 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~ 199 (342)
.... .+..+...+|+... .......+..+++++|++... ..+.+++++|+||||.....+ +.+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHHHHH
Confidence 4433 35667778888763 222222335789999964211 235779999999999875543 4444444
Q ss_pred hhc-CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEec---------hhhHHHHHHHHHHhh
Q 019359 200 TQI-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT---------EAEKYNRLIKLLKEV 269 (342)
Q Consensus 200 ~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~ 269 (342)
... +..+|+++||||++.+.+.+ ..+++++..+.+... ....+...+.... .......+...+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~ 390 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY 390 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh
Confidence 433 33458999999998877766 567887777666421 1122222222111 011122233334332
Q ss_pred c--CCCcEEEEeCCchhHHHHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHH-hcCCCCEEEEecccccCCCCCCCC
Q 019359 270 M--DGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEF-RSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 270 ~--~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
. .++++|||+++.++++.+++.|++. ++.+..+||++++. +..+++| ++|+.+|||||+++++|||+|+|+
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 2 3568999999999999999999977 68999999999964 5667777 689999999999999999999984
No 69
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.8e-31 Score=245.87 Aligned_cols=268 Identities=17% Similarity=0.238 Sum_probs=193.5
Q ss_pred HHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhcCCCCeEE
Q 019359 53 IQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGIRS 131 (342)
Q Consensus 53 ~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~-~~~~~~~~~~ 131 (342)
+-.+++..+.++++++++||||||||+.+..+++..... +.+++|+.|++.++.|+.+.+. .++...+..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 345667778888999999999999999988877765321 3479999999999999999885 4445556666
Q ss_pred EEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch-hhcCCC-hHHHHHHHhhcCCCccEE
Q 019359 132 TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR-MLDMGF-EPQIRKIVTQIRPDRQTL 209 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~-~~~~~~-~~~~~~~~~~~~~~~~~i 209 (342)
....++.... ....+|+|+|++.+++.+... ..+..+++||+||+|. .++.+. ...+..+.+.++++.+++
T Consensus 81 Gy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 81 GYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 5555543321 123579999999999988764 4678999999999996 333222 223344556667788999
Q ss_pred EEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHH-HHHHHHHhhc--CCCcEEEEeCCchhHH
Q 019359 210 YWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN-RLIKLLKEVM--DGSRILIFTETKKGCD 286 (342)
Q Consensus 210 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~~~~lvf~~~~~~~~ 286 (342)
+||||++.. . ...++.++..+..... ...+...+......++.. .+...+.... .++.+|||+++.++++
T Consensus 154 lmSATl~~~--~-l~~~~~~~~~I~~~gr----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 154 IMSATLDND--R-LQQLLPDAPVIVSEGR----SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQ 226 (812)
T ss_pred EEecCCCHH--H-HHHhcCCCCEEEecCc----cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHH
Confidence 999999764 2 3456655444433221 112233332223233222 2222222222 3678999999999999
Q ss_pred HHHHHHHh---CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 287 QVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 287 ~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.+++.|++ .++.+..+||+++..+|..+++.|.+|+.+|||||+++++|||+|+|+
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~ 285 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIR 285 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCce
Confidence 99999987 577889999999999999999999999999999999999999999984
No 70
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.98 E-value=2.9e-30 Score=243.05 Aligned_cols=297 Identities=22% Similarity=0.286 Sum_probs=223.6
Q ss_pred CHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHH
Q 019359 35 PDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (342)
Q Consensus 35 ~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~ 114 (342)
...+...+.+.|...|+.||.+++..+.+|+++++..|||||||.+|++|+++++...+ ..++|++.|+++|++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhHh
Confidence 33456778888999999999999999999999999999999999999999999999875 347899999999999
Q ss_pred HHHHHHHHhcCCCC--eEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc----CCCCccEEEEeccchhhc
Q 019359 115 QIQEEALKFGSRAG--IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT----NLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 115 q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~----~~~~~~~iIvDE~h~~~~ 188 (342)
.+.+.++++....+ +.+....|+....+....+.+.++|++|||++|...+..... .+..+++||+||+|.. .
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-r 208 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-R 208 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec-c
Confidence 99999999877766 777777787777666677778899999999999875544332 2466999999999963 2
Q ss_pred CCChHHHH-------HHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEec-------
Q 019359 189 MGFEPQIR-------KIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT------- 254 (342)
Q Consensus 189 ~~~~~~~~-------~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 254 (342)
..++..+. .++...++..|+|++|||.... ..+...+.+......+..+. .+......+...+
T Consensus 209 Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 209 GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDG--SPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCC--CCCCceEEEEeCCcchhhhh
Confidence 23444333 2334445688999999998654 35566666666665433222 1111111221111
Q ss_pred --hhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHH----HHHHhCC----CCcEeecCCCCHHHHHHHHHHHhcCCC
Q 019359 255 --EAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVT----RQLRMDG----WPALSIHGDKNQSERDWVLAEFRSGRS 323 (342)
Q Consensus 255 --~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~ 323 (342)
.......+..++.... .+-++|+|+.+++.++.+. ..+...+ ..+..+++++...+|..+...|+.|+.
T Consensus 286 ~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 286 SIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred hcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 1122333333333322 3779999999999999997 4444445 568899999999999999999999999
Q ss_pred CEEEEecccccCCCCCCC
Q 019359 324 PIMTATDVAARGLGRITV 341 (342)
Q Consensus 324 ~vlv~t~~~~~Gidip~v 341 (342)
.++++|++++-|+|+-++
T Consensus 366 ~~~~st~AlelgidiG~l 383 (851)
T COG1205 366 LGVIATNALELGIDIGSL 383 (851)
T ss_pred cEEecchhhhhceeehhh
Confidence 999999999999999765
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.98 E-value=8e-30 Score=244.33 Aligned_cols=287 Identities=25% Similarity=0.277 Sum_probs=201.6
Q ss_pred CCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC
Q 019359 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (342)
Q Consensus 47 ~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~ 126 (342)
..++++||.+++...+.+ ++++++|||+|||.++++.+...+.. .+.++||++|+++|+.||.+.++++...
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 348999999999887766 89999999999999888877766632 2678999999999999999999987654
Q ss_pred CCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCc
Q 019359 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDR 206 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~ 206 (342)
.+..+..+.|+...... .....+.+|+|+||+.+...+......+..++++|+||||++........+...........
T Consensus 85 ~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 45577777777665433 33344579999999999887777777788899999999999765432333333333334466
Q ss_pred cEEEEEeecCchHHHH---HHHhcCCCeE------------------EEecc--cc-c----------------------
Q 019359 207 QTLYWSATWPREVETL---ARQFLRNPYK------------------VIIGS--LE-L---------------------- 240 (342)
Q Consensus 207 ~~i~~SaT~~~~~~~~---~~~~~~~~~~------------------~~~~~--~~-~---------------------- 240 (342)
+++++||||......+ +..+...... ..... .. .
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7999999985332221 1111000000 00000 00 0
Q ss_pred -c-ccc-------------ccce---------------------------------------------------------
Q 019359 241 -K-ANQ-------------SINQ--------------------------------------------------------- 248 (342)
Q Consensus 241 -~-~~~-------------~~~~--------------------------------------------------------- 248 (342)
. ... .+..
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 0 000 0000
Q ss_pred ---------------EEEEechhhHHHHHHHHHHhhc---CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCC-----
Q 019359 249 ---------------VVEVVTEAEKYNRLIKLLKEVM---DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGD----- 305 (342)
Q Consensus 249 ---------------~~~~~~~~~~~~~l~~~l~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~----- 305 (342)
.........|...+.+++.+.. .++++||||+++.+++.+.+.|...++++..++|.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 0000011234445555555532 47899999999999999999999999999999886
Q ss_pred ---CCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 306 ---KNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 306 ---~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+++.+|..+++.|++|+.++||+|+++++|+|+|+++
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~ 443 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVD 443 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCC
Confidence 8889999999999999999999999999999999875
No 72
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.1e-31 Score=205.33 Aligned_cols=277 Identities=26% Similarity=0.437 Sum_probs=229.7
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEE
Q 019359 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (342)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vl 104 (342)
-..-|.++-+.|++.+++..+||..|+..|.++++...-|-+++++|-.|.|||.+|.++.++++..-.. ...++
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g-----~vsvl 114 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG-----QVSVL 114 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC-----eEEEE
Confidence 3445778889999999999999999999999999998899999999999999999999998888765432 45799
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEecc
Q 019359 105 VLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEA 183 (342)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~ 183 (342)
++|++++|+-|+..+..+|..+. +.++..++||.+.......+.+-++|+|+||++++.+.....+++..+..+|+|||
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 99999999999999888886654 68999999999988888888888999999999999999999999999999999999
Q ss_pred chhhcC-CChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHH
Q 019359 184 DRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRL 262 (342)
Q Consensus 184 h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (342)
+.++.. +.+..+..+...-+...|++.+|||++.+......+++.+|..+.+.....-.-....+++....+.++...+
T Consensus 195 dkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl 274 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKL 274 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhh
Confidence 988753 3567778888888889999999999999999999999999998887665433445556666666666777777
Q ss_pred HHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 263 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.+++... +-++++||+.+..... | ..+ +|+|+.+++|+|+-.||
T Consensus 275 ~dLLd~L-eFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdiervN 318 (387)
T KOG0329|consen 275 NDLLDVL-EFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIERVN 318 (387)
T ss_pred hhhhhhh-hhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCcccce
Confidence 7766553 5678999998766410 2 122 78888888888887654
No 73
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.6e-29 Score=228.08 Aligned_cols=293 Identities=20% Similarity=0.258 Sum_probs=207.5
Q ss_pred HHcCCCCCcHHHHhhHHHHhc-CCCEEEEcCCCCchhhHhHHHHHHhhhcC--CCccCCCCceEEEEcCcHHHHHHHHHH
Q 019359 43 AKLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQ--PRLVQGEGPIVLVLAPTRELAVQIQEE 119 (342)
Q Consensus 43 ~~~~~~~l~~~Q~~~~~~~~~-~~~~l~~~~tG~GKT~~~~~~~~~~~~~~--~~~~~~~~~~vlil~p~~~l~~q~~~~ 119 (342)
.-++|..+...|..+++...+ ..|.|++||||+|||.+|++.++..+.+. ......++.++++++|.++|+.+..+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 446888999999999997665 57999999999999999999999988751 111112378999999999999999888
Q ss_pred HHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccc---cCCCCccEEEEeccchhhcCCChHHHH
Q 019359 120 ALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH---TNLRRVTYLVLDEADRMLDMGFEPQIR 196 (342)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~iIvDE~h~~~~~~~~~~~~ 196 (342)
|.+=....|+.+..+.|+.+..... ...++|+|+||++.--.-.... ..++.+.++|+||+|.+.++ .++.++
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHH
Confidence 8765555699999999998765553 2248999999998743222211 23567899999999976544 677777
Q ss_pred HHHhhc-------CCCccEEEEEeecCchHHHHHHHhcCCCeEEEec-ccccccccccceEEEEech------hh-HHHH
Q 019359 197 KIVTQI-------RPDRQTLYWSATWPREVETLARQFLRNPYKVIIG-SLELKANQSINQVVEVVTE------AE-KYNR 261 (342)
Q Consensus 197 ~~~~~~-------~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~-~~~~ 261 (342)
.++.+. ++..+++++|||+|... +.+..+-.++..-.+. +...++.+.....+..... .. ....
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~e-DvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYE-DVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHH-HHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 665443 45679999999998753 3333333332222222 2111222222222222211 01 1112
Q ss_pred HHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC----C-------------------CCcEeecCCCCHHHHHHHHHHH
Q 019359 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD----G-------------------WPALSIHGDKNQSERDWVLAEF 318 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~-------------------~~~~~~~~~~~~~~r~~~~~~f 318 (342)
..+.++.+.++.+++|||.++......++.|.+. | ....+.|+++...+|..+.+.|
T Consensus 339 ~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F 418 (1230)
T KOG0952|consen 339 YDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF 418 (1230)
T ss_pred HHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHH
Confidence 2334444556899999999999988888888642 1 1256889999999999999999
Q ss_pred hcCCCCEEEEecccccCCCCCC
Q 019359 319 RSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 319 ~~~~~~vlv~t~~~~~Gidip~ 340 (342)
..|.++||+||+.++.|+|+|.
T Consensus 419 ~~G~i~vL~cTaTLAwGVNLPA 440 (1230)
T KOG0952|consen 419 KEGHIKVLCCTATLAWGVNLPA 440 (1230)
T ss_pred hcCCceEEEecceeeeccCCcc
Confidence 9999999999999999999996
No 74
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.97 E-value=1.1e-28 Score=225.62 Aligned_cols=278 Identities=19% Similarity=0.166 Sum_probs=193.8
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~ 128 (342)
.++|+|.+++..+..++..++.++||+|||+++++|++..... +..++|++|+++|+.|+.+++..+...+|
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 4566666666655555567999999999999999997665554 45699999999999999999999988899
Q ss_pred eEEEEEecCCc---chhhHHhhcCCCcEEEeChHHH-HHHHhcc------ccCCCCccEEEEeccchhhcCC--------
Q 019359 129 IRSTCIYGGAP---KGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRMLDMG-------- 190 (342)
Q Consensus 129 ~~~~~~~~~~~---~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~~~~-------- 190 (342)
+.+..+.++.. ..........+++|+++||+.+ .+++... ...+..+.++|+||||.++-..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99888776522 2222233335699999999999 4444332 2335678999999999842110
Q ss_pred ------------------------------------------------------ChH----HHHHHHhhc------C---
Q 019359 191 ------------------------------------------------------FEP----QIRKIVTQI------R--- 203 (342)
Q Consensus 191 ------------------------------------------------------~~~----~~~~~~~~~------~--- 203 (342)
|.. .+..+.+.+ .
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 000 000000000 0
Q ss_pred ----------------------------------------------------------CCccEEEEEeecCchHHHHHHH
Q 019359 204 ----------------------------------------------------------PDRQTLYWSATWPREVETLARQ 225 (342)
Q Consensus 204 ----------------------------------------------------------~~~~~i~~SaT~~~~~~~~~~~ 225 (342)
.-.++.+||+|.......+. .
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~-~ 378 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI-E 378 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH-H
Confidence 00367788888655444444 4
Q ss_pred hcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecC
Q 019359 226 FLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHG 304 (342)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~ 304 (342)
.++.... .++...+...... ..........+...+.+.+.+. ..+.++||||++++.++.++..|.+.|+++..+||
T Consensus 379 iY~l~v~-~IPt~kp~~r~d~-~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 379 TYSLSVV-KIPTNKPIIRIDY-PDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred HhCCCEE-EcCCCCCeeeeeC-CCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 5554442 3332221111111 2233455667888888888764 45889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 305 DKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 305 ~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
++.+.++..+.+.++.| .|+|||+++++|+|+|
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~ 489 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIK 489 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCC
Confidence 99988887777777666 6999999999999999
No 75
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=3.5e-29 Score=205.47 Aligned_cols=300 Identities=19% Similarity=0.273 Sum_probs=234.1
Q ss_pred ccccc--CCCCHHHHHHHHH-cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceE
Q 019359 27 RIFQE--ANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (342)
Q Consensus 27 ~~~~~--~~~~~~~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~v 103 (342)
..|+. ++++....+.|.. +....++|.|..+++..+.+.++++.+|||.||+++|.+|++-. ...+
T Consensus 69 aawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~a 137 (695)
T KOG0353|consen 69 AAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFA 137 (695)
T ss_pred cccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCce
Confidence 34554 6678888888765 67778999999999999999999999999999999999998865 5668
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh--HH----hhcCCCcEEEeChHHHHH------HHhccccC
Q 019359 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ--IR----DLRRGVEIVIATPGRLID------MLEAQHTN 171 (342)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~iiv~T~~~l~~------~~~~~~~~ 171 (342)
|+++|...|.....-.++++ |+...++...++..+. +. .-.+...+++.||+.+.. .++. ...
T Consensus 138 lvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-a~~ 212 (695)
T KOG0353|consen 138 LVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-ALE 212 (695)
T ss_pred EeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-Hhh
Confidence 99999999999888888885 5555555555444332 11 112347899999998753 1222 223
Q ss_pred CCCccEEEEeccchhhcCC--ChHHHHH--HHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccc
Q 019359 172 LRRVTYLVLDEADRMLDMG--FEPQIRK--IVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSIN 247 (342)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~--~~~~~~~--~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
...+.+|.+||+|.-..|+ |++.+.. ++++--++..++++|||....+-......+.-...+.+.....+++-.+.
T Consensus 213 ~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 213 AGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYE 292 (695)
T ss_pred cceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeE
Confidence 5668899999999887766 6665544 33433357889999999877766666666665555555555545554444
Q ss_pred eEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEE
Q 019359 248 QVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMT 327 (342)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 327 (342)
..-...++++-...+...+...+.+...||||-+.++++.++..|+..|+....+|..+.+.++..+-+.|..|+++|+|
T Consensus 293 v~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqviv 372 (695)
T KOG0353|consen 293 VRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIV 372 (695)
T ss_pred eeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEE
Confidence 44444556677788888887777788899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccCCCCCCCC
Q 019359 328 ATDVAARGLGRITVC 342 (342)
Q Consensus 328 ~t~~~~~Gidip~v~ 342 (342)
+|-+++.|||-|+||
T Consensus 373 atvafgmgidkpdvr 387 (695)
T KOG0353|consen 373 ATVAFGMGIDKPDVR 387 (695)
T ss_pred EEeeecccCCCCCee
Confidence 999999999999986
No 76
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1e-27 Score=216.86 Aligned_cols=277 Identities=22% Similarity=0.252 Sum_probs=201.3
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|. .|++.|..++..+..|+ +..+.||+|||++++++++..... +..++|++|+++|+.|.++++..+.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 566 89999999999999988 999999999999999999877554 6789999999999999999999999
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhccc-------------------------cCCCCccEE
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH-------------------------TNLRRVTYL 178 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~-------------------------~~~~~~~~i 178 (342)
...++.+.++.|+.+. ..+....+++|+++|...+ .+++..+. .....+.+.
T Consensus 169 ~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 169 EALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred hhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 9999999999998654 3334445789999998766 33333221 113457899
Q ss_pred EEeccchhh-cCC------------C--hHH-----------------------------------HHHHH---------
Q 019359 179 VLDEADRML-DMG------------F--EPQ-----------------------------------IRKIV--------- 199 (342)
Q Consensus 179 IvDE~h~~~-~~~------------~--~~~-----------------------------------~~~~~--------- 199 (342)
||||++.++ +.. . ... +..+.
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 999999732 100 0 000 00000
Q ss_pred ---------hhc------C-------------------------------------------------------------
Q 019359 200 ---------TQI------R------------------------------------------------------------- 203 (342)
Q Consensus 200 ---------~~~------~------------------------------------------------------------- 203 (342)
+.+ .
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence 000 0
Q ss_pred CCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhc-CCCcEEEEeCCc
Q 019359 204 PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETK 282 (342)
Q Consensus 204 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~ 282 (342)
.-.++.+||||.....+.+...+..++..+..... . .......+...+..++...+.+.+.+.. .+.++||||+++
T Consensus 407 ~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp--~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~ 483 (656)
T PRK12898 407 RYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRP--S-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSV 483 (656)
T ss_pred hhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCC--c-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 00267889999887666666666555443322221 1 1112233344567778888888887754 367899999999
Q ss_pred hhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 283 KGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 283 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
+.++.+++.|.+.|+++..+||+.+ +++..+..|..++..|+|||+++++|+|||
T Consensus 484 ~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~ 538 (656)
T PRK12898 484 AASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIK 538 (656)
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcC
Confidence 9999999999999999999999865 445555556666667999999999999999
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.96 E-value=6.6e-28 Score=219.26 Aligned_cols=278 Identities=22% Similarity=0.276 Sum_probs=200.7
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|. .|++.|.-....+..|+ +..++||+|||++++++++..... +..+.|++|+..||.|..+++..+.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 565 78888888777665554 999999999999999988544333 4459999999999999999999999
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhcc------ccCCCCccEEEEeccchhhc-CC------
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRMLD-MG------ 190 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~~-~~------ 190 (342)
..+|+.+..+.++.+.......+ .++|+++|+..+ .+++..+ ...+..+.++|+||+|+++- ..
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 99999999999987765444333 479999999999 7777665 23567899999999998321 00
Q ss_pred --------------------------Ch---------------HHHHH------------------HHhhc------C--
Q 019359 191 --------------------------FE---------------PQIRK------------------IVTQI------R-- 203 (342)
Q Consensus 191 --------------------------~~---------------~~~~~------------------~~~~~------~-- 203 (342)
|. ..+.. +.+.+ .
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 00 00000 00000 0
Q ss_pred -----------------------------------------------------------CCccEEEEEeecCchHHHHHH
Q 019359 204 -----------------------------------------------------------PDRQTLYWSATWPREVETLAR 224 (342)
Q Consensus 204 -----------------------------------------------------------~~~~~i~~SaT~~~~~~~~~~ 224 (342)
.-.++.+||+|....... ..
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E-~~ 358 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEE-FE 358 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHH-HH
Confidence 002677888887554433 34
Q ss_pred HhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHh-hcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeec
Q 019359 225 QFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIH 303 (342)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~ 303 (342)
..++.+... ++...+.........+ ......+...+.+.+.+ +..+.++||||++++.++.+++.|.+.|+++..+|
T Consensus 359 ~iY~l~vv~-IPtnkp~~R~d~~d~i-~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Ln 436 (745)
T TIGR00963 359 KIYNLEVVV-VPTNRPVIRKDLSDLV-YKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLN 436 (745)
T ss_pred HHhCCCEEE-eCCCCCeeeeeCCCeE-EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEee
Confidence 455555443 3322211112222222 34455666677665544 34588999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 304 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 304 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
++ ..+|+..+..|..+...|+|||+++++|+||+.
T Consensus 437 a~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l 471 (745)
T TIGR00963 437 AK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL 471 (745)
T ss_pred CC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCc
Confidence 98 668899999999999999999999999999986
No 78
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.8e-27 Score=222.21 Aligned_cols=279 Identities=21% Similarity=0.246 Sum_probs=207.4
Q ss_pred HHHHHHcCCCCCcHHHHhhHHHHhc----C--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 39 LEVIAKLGFVEPTPIQAQGWPMALK----G--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 39 ~~~l~~~~~~~l~~~Q~~~~~~~~~----~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
.+.-.+++| +-++.|..+++.+.+ + -|-|+||..|.|||.+++=+++..+.. |++|.|||||.-|
T Consensus 585 ~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLVPTTlL 655 (1139)
T COG1197 585 EEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLVPTTLL 655 (1139)
T ss_pred HHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEcccHHh
Confidence 333445788 889999999998764 2 488999999999999988888887766 7789999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEecCCcchhh---HHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc
Q 019359 113 AVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (342)
++|.++.|++=-....+++..++.-.+..+. ...+.. ..||+|+|. .+-+....+.+++++||||-|++
T Consensus 656 A~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEEqRF-- 728 (1139)
T COG1197 656 AQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEEQRF-- 728 (1139)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEechhhc--
Confidence 9999998886434457787777665554444 334444 489999995 33344556788999999999994
Q ss_pred CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHh
Q 019359 189 MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE 268 (342)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 268 (342)
+-.-+..++.+..+..++-|||||-+..-.+....+.+...+..++.. .-.+..++ .+.+....-..++++
T Consensus 729 ---GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~---R~pV~T~V---~~~d~~~ireAI~RE 799 (1139)
T COG1197 729 ---GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED---RLPVKTFV---SEYDDLLIREAILRE 799 (1139)
T ss_pred ---CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC---CcceEEEE---ecCChHHHHHHHHHH
Confidence 444455566666788999999998554434444444443333332211 11122222 222222233344556
Q ss_pred hcCCCcEEEEeCCchhHHHHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 269 VMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 269 ~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
...++++...+|.++..+.+++.|++. ..++.+.||.|++.+-++++..|.+|+++|||||.+++.|||||+.|
T Consensus 800 l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnAN 875 (1139)
T COG1197 800 LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNAN 875 (1139)
T ss_pred HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCc
Confidence 666999999999999999999999976 44688999999999999999999999999999999999999999986
No 79
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.9e-27 Score=190.80 Aligned_cols=266 Identities=19% Similarity=0.224 Sum_probs=194.7
Q ss_pred CCcHHHHhhHHH----HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~----~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
+|++.|+.+-.. +.+.++.++.|.||+|||.. ++..++..... |.++.+.+|+...+.+++..+++-
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~a- 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQA- 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHh-
Confidence 799999987554 45678999999999999985 55555555443 889999999999999999999873
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCC
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (342)
+.+..+..++|++...-. ..++|+|.++|+++-+. +|++||||++.+-............+....
T Consensus 168 -F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 168 -FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQA-------FDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred -hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHhh-------ccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 456778888888766433 67999999999998554 899999999987544334455555666667
Q ss_pred CccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHH------HHHHHHHHhhcC-CCcEEE
Q 019359 205 DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY------NRLIKLLKEVMD-GSRILI 277 (342)
Q Consensus 205 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~l~~~~~-~~~~lv 277 (342)
....|++|||+++.+++-+.. ++...+.+.......+-.+..++-..+-..++ ..+..++++... +.+++|
T Consensus 233 ~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 233 EGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred cCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 788999999998876654432 22222233222222222223333333322222 257777776544 789999
Q ss_pred EeCCchhHHHHHHHHHhC-C-CCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 278 FTETKKGCDQVTRQLRMD-G-WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 278 f~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|+++++.+++++..|++. + ..+..+|+... .|.+.+++|++|++++||+|.++++|+.+|+|.
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vd 375 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKITLLITTTILERGVTFPNVD 375 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCceEEEEEeehhhcccccccce
Confidence 999999999999999654 2 23467887654 899999999999999999999999999999873
No 80
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=3.3e-28 Score=227.90 Aligned_cols=283 Identities=22% Similarity=0.276 Sum_probs=221.6
Q ss_pred HHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 41 VIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 41 ~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
....+|...+++.|++++...+.|++.++.+|||.||+++|.+|++-. +...+||.|..+|...+...+
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhh
Confidence 344589999999999999999999999999999999999998887765 557899999999998776666
Q ss_pred HHhcCCCCeEEEEEecCCcchhh---HHhhcC---CCcEEEeChHHHHHH--HhccccCCCC---ccEEEEeccchhhcC
Q 019359 121 LKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR---GVEIVIATPGRLIDM--LEAQHTNLRR---VTYLVLDEADRMLDM 189 (342)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~iiv~T~~~l~~~--~~~~~~~~~~---~~~iIvDE~h~~~~~ 189 (342)
.. .++....++++...... ...+.. ..++++.||+++..- +......+.. +.++||||||.+..|
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 44 47888888887766533 233332 478999999987542 1111122333 789999999999887
Q ss_pred C--ChHHHHHHHhhc--CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEech--hhHHHHHH
Q 019359 190 G--FEPQIRKIVTQI--RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE--AEKYNRLI 263 (342)
Q Consensus 190 ~--~~~~~~~~~~~~--~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 263 (342)
+ |++.++.+.... -+...+|++|||....+...+-..++.........+..+.+- ++.+... ......+.
T Consensus 401 gHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL----~yeV~~k~~~~~~~~~~ 476 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNL----KYEVSPKTDKDALLDIL 476 (941)
T ss_pred cccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCc----eEEEEeccCccchHHHH
Confidence 6 888887763322 234789999999988877777666665555555544333222 2223332 35556667
Q ss_pred HHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 264 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
..+.........||||.++.+++.++..|.+.|+....||+++++++|..+.+.|..++++|++||-++++|||.||||
T Consensus 477 ~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR 555 (941)
T KOG0351|consen 477 EESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVR 555 (941)
T ss_pred HHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCcee
Confidence 7777777888999999999999999999999999999999999999999999999999999999999999999999996
No 81
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.5e-27 Score=217.83 Aligned_cols=281 Identities=22% Similarity=0.259 Sum_probs=200.8
Q ss_pred HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+|. .|++.|......+..|+ +..+.||+|||++++++++..... |..++|++|++.||.|..+++..+
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3566 88999988887766665 999999999999999998866554 667999999999999999999999
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhccc------cCCCCccEEEEeccchhh-cCC-----
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRML-DMG----- 190 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~-~~~----- 190 (342)
....|+.+..+.|+.+...+.+.. ..++|+++|+..+ .+++..+. .....+.++|+||+|.++ +..
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 999999999999988743333332 3589999999887 44433321 235678999999999832 100
Q ss_pred --------------------------------------------------------ChH----HHHHHHhhc------C-
Q 019359 191 --------------------------------------------------------FEP----QIRKIVTQI------R- 203 (342)
Q Consensus 191 --------------------------------------------------------~~~----~~~~~~~~~------~- 203 (342)
|.. .+..+.+.+ .
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~ 301 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKR 301 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhc
Confidence 000 000000000 0
Q ss_pred ------------------------------------------------------------CCccEEEEEeecCchHHHHH
Q 019359 204 ------------------------------------------------------------PDRQTLYWSATWPREVETLA 223 (342)
Q Consensus 204 ------------------------------------------------------------~~~~~i~~SaT~~~~~~~~~ 223 (342)
.-.++.+||+|.....+.+
T Consensus 302 d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~- 380 (790)
T PRK09200 302 DVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF- 380 (790)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-
Confidence 0026778888875544444
Q ss_pred HHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEee
Q 019359 224 RQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSI 302 (342)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 302 (342)
...++.... .++...+........ ....+...+...+.+.+.+. ..+.++||||++++.++.++..|.+.|+++..+
T Consensus 381 ~~~Y~l~v~-~IPt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L 458 (790)
T PRK09200 381 FEVYNMEVV-QIPTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458 (790)
T ss_pred HHHhCCcEE-ECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 444554443 333222111122222 22345667888888888764 458899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCC---CCC
Q 019359 303 HGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGR---ITV 341 (342)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidi---p~v 341 (342)
||++.+.++..+...+..| .|+|||+++++|+|+ |+|
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V 498 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGV 498 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCccccc
Confidence 9999988887777777665 699999999999999 565
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=8.6e-27 Score=217.17 Aligned_cols=273 Identities=21% Similarity=0.209 Sum_probs=185.0
Q ss_pred CCcHHHHhhHHHHhcC---CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 49 EPTPIQAQGWPMALKG---RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~---~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
.|+++|+++++.+..+ +++++.|+||+|||.+|+.++...+.. +.++||++|+++|+.|+.+.+++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~-- 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRAR-- 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH--
Confidence 6899999999998874 789999999999999988776665543 667999999999999999999874
Q ss_pred CCCeEEEEEecCCcchhhHHh---h-cCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCCh---HHHHH-
Q 019359 126 RAGIRSTCIYGGAPKGPQIRD---L-RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFE---PQIRK- 197 (342)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~---~~~~~- 197 (342)
++..+..++++.+..+.... . ....+|+|+|+..+. .++..+++||+||+|........ ...+.
T Consensus 214 -fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 214 -FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred -hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 35678888888766544322 2 234799999997653 34677999999999976533211 11111
Q ss_pred -HHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEech-------hhHHHHHHHHHHhh
Q 019359 198 -IVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE-------AEKYNRLIKLLKEV 269 (342)
Q Consensus 198 -~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~ 269 (342)
.......+.+++++|||++......+ ..+............... .....+..... ......+.+.+++.
T Consensus 286 a~~ra~~~~~~~il~SATps~~s~~~~--~~g~~~~~~l~~r~~~~~-~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 286 AVVRAKLENIPVVLGSATPSLESLANA--QQGRYRLLRLTKRAGGAR-LPEVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred HHHHhhccCCCEEEEcCCCCHHHHHHH--hccceeEEEeccccccCC-CCeEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 22233457899999999865432222 222222222221110000 00111111110 01123455556555
Q ss_pred cC-CCcEEEEeCCch------------------------------------------------------------hHHHH
Q 019359 270 MD-GSRILIFTETKK------------------------------------------------------------GCDQV 288 (342)
Q Consensus 270 ~~-~~~~lvf~~~~~------------------------------------------------------------~~~~l 288 (342)
.. ++++|||+|++. -++.+
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 44 678999987532 45577
Q ss_pred HHHHHhC--CCCcEeecCCCC--HHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 289 TRQLRMD--GWPALSIHGDKN--QSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 289 ~~~L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
++.|++. +.++..+|+++. ..+++.+++.|++|+.+|||+|+++++|+|+|+|.
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~ 500 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVT 500 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcC
Confidence 7777775 678899999876 45789999999999999999999999999999974
No 83
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=1.9e-26 Score=222.59 Aligned_cols=278 Identities=16% Similarity=0.215 Sum_probs=171.3
Q ss_pred CCcHHHHhhHHHHh----cC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 49 EPTPIQAQGWPMAL----KG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~----~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+|+||.+++..+. .+ +++++++|||+|||.+++..+ .++.... ...++|||+|+.+|+.|+.+.|..+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKAK-----RFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhcC-----ccCeEEEEecHHHHHHHHHHHHHhc
Confidence 68999999997765 23 679999999999999855444 3333321 1468999999999999999999987
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcc-----ccCCCCccEEEEeccchhhcC---------
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-----HTNLRRVTYLVLDEADRMLDM--------- 189 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~~~~~~~iIvDE~h~~~~~--------- 189 (342)
.......+..+.+....... .......|+|+|++++.+.+... ...+..+++||+||||+....
T Consensus 487 ~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 43322121111111000000 11234789999999998764321 134678999999999985310
Q ss_pred ------CChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCe---------------------EEEeccccc--
Q 019359 190 ------GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPY---------------------KVIIGSLEL-- 240 (342)
Q Consensus 190 ------~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~-- 240 (342)
.+...++.++.++. ...|++||||...... +++.|. .+.......
T Consensus 565 ~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi 638 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGI 638 (1123)
T ss_pred ccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccc
Confidence 01356677777653 5789999998654322 222222 111100000
Q ss_pred --ccc---cccce---EE--EEech---------------hhHHHHHHHHHHhhc---CCCcEEEEeCCchhHHHHHHHH
Q 019359 241 --KAN---QSINQ---VV--EVVTE---------------AEKYNRLIKLLKEVM---DGSRILIFTETKKGCDQVTRQL 292 (342)
Q Consensus 241 --~~~---~~~~~---~~--~~~~~---------------~~~~~~l~~~l~~~~---~~~~~lvf~~~~~~~~~l~~~L 292 (342)
... ..++. .+ ....+ +.....+++.+.++. .++|+||||.+.+||+.+.+.|
T Consensus 639 ~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L 718 (1123)
T PRK11448 639 HFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLL 718 (1123)
T ss_pred cccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHH
Confidence 000 00000 00 00000 011111222222221 2479999999999999999887
Q ss_pred HhC------CC---CcEeecCCCCHHHHHHHHHHHhcCCC-CEEEEecccccCCCCCCCC
Q 019359 293 RMD------GW---PALSIHGDKNQSERDWVLAEFRSGRS-PIMTATDVAARGLGRITVC 342 (342)
Q Consensus 293 ~~~------~~---~~~~~~~~~~~~~r~~~~~~f~~~~~-~vlv~t~~~~~Gidip~v~ 342 (342)
.+. +. .+..++|+++ ++..+++.|++++. .|+|+++++++|+|+|.|.
T Consensus 719 ~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~ 776 (1123)
T PRK11448 719 KEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSIC 776 (1123)
T ss_pred HHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccccc
Confidence 753 22 3456888876 56789999999887 5899999999999999874
No 84
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=7.4e-27 Score=183.28 Aligned_cols=164 Identities=33% Similarity=0.539 Sum_probs=137.9
Q ss_pred cHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeE
Q 019359 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (342)
Q Consensus 51 ~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~ 130 (342)
+|+|.++++.+.+++++++.+|||+|||++++.+++..+.... ..++++++|+++|+.|..+.+..+....+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~------~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK------DARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS------SSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC------CceEEEEeecccccccccccccccccccccc
Confidence 5899999999999999999999999999999999998887642 3479999999999999999999998877888
Q ss_pred EEEEecCCcch-hhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcC--CCcc
Q 019359 131 STCIYGGAPKG-PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR--PDRQ 207 (342)
Q Consensus 131 ~~~~~~~~~~~-~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~--~~~~ 207 (342)
+..++++.... .....+..+++|+|+||+++.+.+.....++..++++|+||+|.+....+...+..+...+. .+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99998887754 33333445699999999999999888655677799999999999988777777888777763 3588
Q ss_pred EEEEEeecCchHH
Q 019359 208 TLYWSATWPREVE 220 (342)
Q Consensus 208 ~i~~SaT~~~~~~ 220 (342)
++++|||++..++
T Consensus 155 ~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 155 IILLSATLPSNVE 167 (169)
T ss_dssp EEEEESSSTHHHH
T ss_pred EEEEeeCCChhHh
Confidence 9999999985544
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.2e-26 Score=212.37 Aligned_cols=277 Identities=20% Similarity=0.255 Sum_probs=196.7
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
+|. .+++.|.-.--.+ .+.-+..++||+|||+++++|++..+.. +..++|++|++.||.|..+++..+.
T Consensus 79 lg~-~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 344 5566665543333 4456889999999999999999876654 4459999999999999999999999
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhcc-ccCC-----CCccEEEEeccchhh-cC-------
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ-HTNL-----RRVTYLVLDEADRML-DM------- 189 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~-~~~~-----~~~~~iIvDE~h~~~-~~------- 189 (342)
...|+.+.++.|+.+.......+ .++|+++||+.| .+++..+ ...+ ..+.++|+||+|.++ +.
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLII 225 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLII 225 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceee
Confidence 99999999999987766554444 589999999999 8888776 2333 478999999999832 10
Q ss_pred -------------------------------CCh---------------HHHHHHH------------------------
Q 019359 190 -------------------------------GFE---------------PQIRKIV------------------------ 199 (342)
Q Consensus 190 -------------------------------~~~---------------~~~~~~~------------------------ 199 (342)
.|. ..+..++
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i 305 (896)
T PRK13104 226 SGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHV 305 (896)
T ss_pred eCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHH
Confidence 000 0000000
Q ss_pred -hhc------C-------------------------------------------------------------CCccEEEE
Q 019359 200 -TQI------R-------------------------------------------------------------PDRQTLYW 211 (342)
Q Consensus 200 -~~~------~-------------------------------------------------------------~~~~~i~~ 211 (342)
+.+ . .-.++-+|
T Consensus 306 ~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGM 385 (896)
T PRK13104 306 NAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGM 385 (896)
T ss_pred HHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccC
Confidence 000 0 00256677
Q ss_pred EeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHH
Q 019359 212 SATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTR 290 (342)
Q Consensus 212 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~ 290 (342)
|+|.......+ ...++.+...+ +...+...... ..........+...+++.+.+. ..+.++||||+|++.++.+++
T Consensus 386 TGTa~te~~Ef-~~iY~l~Vv~I-Ptnkp~~R~d~-~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~ 462 (896)
T PRK13104 386 TGTADTEAYEF-QQIYNLEVVVI-PTNRSMIRKDE-ADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQ 462 (896)
T ss_pred CCCChhHHHHH-HHHhCCCEEEC-CCCCCcceecC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 77765444333 33444443322 22111111112 2233445666777777666554 458899999999999999999
Q ss_pred HHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 291 QLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 291 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
.|++.|+++..+|+...+.++..+.+.|+.|. |+|||+++++|+||.
T Consensus 463 ~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 463 LLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred HHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCccee
Confidence 99999999999999999999999999999995 999999999999985
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=9.1e-26 Score=212.10 Aligned_cols=285 Identities=16% Similarity=0.190 Sum_probs=176.3
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC-
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR- 126 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~- 126 (342)
..|+|+|..+.........+++.+|||+|||.+++..+...+... ...+++|..|+++.++|+++.+.++...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~------~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG------LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 389999998865433456789999999999998777655433321 2467999999999999999988754321
Q ss_pred -CCeEEEEEecCCcchhhH--------------------Hhhc----C---CCcEEEeChHHHHHHHhc-cccCCCC---
Q 019359 127 -AGIRSTCIYGGAPKGPQI--------------------RDLR----R---GVEIVIATPGRLIDMLEA-QHTNLRR--- 174 (342)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~--------------------~~~~----~---~~~iiv~T~~~l~~~~~~-~~~~~~~--- 174 (342)
....+...+|........ ..+. + -..|+|||.++++..... ....+..
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 123556666654311100 0111 1 168999999998743322 2222222
Q ss_pred -ccEEEEeccchhhcCCChHHHHHHHhhc-CCCccEEEEEeecCchHHHHHHHhcCCC--------eEEEecc-----cc
Q 019359 175 -VTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNP--------YKVIIGS-----LE 239 (342)
Q Consensus 175 -~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~--------~~~~~~~-----~~ 239 (342)
-++|||||+|.+ +......+..+++.+ .....+|+||||++..........++.. +...... ..
T Consensus 439 a~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 439 GRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred ccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 358999999975 222333444444443 3457799999999887655433322211 0000000 00
Q ss_pred c--ccc---cccceEEEE--e--ch-hhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCC---CCcEeecCCC
Q 019359 240 L--KAN---QSINQVVEV--V--TE-AEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG---WPALSIHGDK 306 (342)
Q Consensus 240 ~--~~~---~~~~~~~~~--~--~~-~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~ 306 (342)
. ... ......+.. . .. ......+..+++....+++++||||+++.|+.+++.|++.+ .++..+|+.+
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf 597 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARF 597 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 0 000 001111111 1 11 11122223333333457899999999999999999999764 5799999999
Q ss_pred CHHHH----HHHHHHH-hcCC---CCEEEEecccccCCCCC
Q 019359 307 NQSER----DWVLAEF-RSGR---SPIMTATDVAARGLGRI 339 (342)
Q Consensus 307 ~~~~r----~~~~~~f-~~~~---~~vlv~t~~~~~Gidip 339 (342)
+..+| ..+++.| ++|+ ..|||+|++++.|+|++
T Consensus 598 ~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId 638 (878)
T PRK09694 598 TLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD 638 (878)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC
Confidence 99988 4567788 5665 46999999999999994
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=9.3e-26 Score=203.09 Aligned_cols=253 Identities=18% Similarity=0.216 Sum_probs=165.9
Q ss_pred EEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH--
Q 019359 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR-- 145 (342)
Q Consensus 68 l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 145 (342)
|+.||||+|||.+|+..+...+.. +.++||++|+++|+.|+.+.+++. ++..+..++++.+..+...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHH
Confidence 578999999999987655444433 667999999999999999999873 3456777888766544322
Q ss_pred -hhc-CCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC-----Ch-HHHHHHHhhcCCCccEEEEEeecCc
Q 019359 146 -DLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----FE-PQIRKIVTQIRPDRQTLYWSATWPR 217 (342)
Q Consensus 146 -~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~~-~~~~~~~~~~~~~~~~i~~SaT~~~ 217 (342)
... ...+|+|+|+..+. .++..+++|||||.|....++ |. ..+..+... ..+.+++++||||+.
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsl 141 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSL 141 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCH
Confidence 222 34789999987663 246679999999999875432 11 122222232 357889999999764
Q ss_pred hHHHHHHHhcCCCeEEEecccccccccccceEEEEechh----hHHHHHHHHHHhhcC-CCcEEEEeCCchh--------
Q 019359 218 EVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEA----EKYNRLIKLLKEVMD-GSRILIFTETKKG-------- 284 (342)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~-~~~~lvf~~~~~~-------- 284 (342)
+. ......+............... .....+.....+ .....+.+.+++... ++++|||+|++..
T Consensus 142 es--~~~~~~g~~~~~~l~~r~~~~~-~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~ 218 (505)
T TIGR00595 142 ES--YHNAKQKAYRLLVLTRRVSGRK-PPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRS 218 (505)
T ss_pred HH--HHHHhcCCeEEeechhhhcCCC-CCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhh
Confidence 42 2222222211111111100000 001111111111 112345555555544 6789999776543
Q ss_pred ----------------------------------------------------HHHHHHHHHhC--CCCcEeecCCCCHHH
Q 019359 285 ----------------------------------------------------CDQVTRQLRMD--GWPALSIHGDKNQSE 310 (342)
Q Consensus 285 ----------------------------------------------------~~~l~~~L~~~--~~~~~~~~~~~~~~~ 310 (342)
.+.+.+.|++. +.++..+|+++....
T Consensus 219 Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~ 298 (505)
T TIGR00595 219 CGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRK 298 (505)
T ss_pred CcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCc
Confidence 47788888876 678899999987665
Q ss_pred H--HHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 311 R--DWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 311 r--~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+ +.+++.|++|+.+|||+|++++.|+|+|+|.
T Consensus 299 ~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~ 332 (505)
T TIGR00595 299 GAHEALLNQFANGKADILIGTQMIAKGHHFPNVT 332 (505)
T ss_pred cHHHHHHHHHhcCCCCEEEeCcccccCCCCCccc
Confidence 5 8899999999999999999999999999874
No 88
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=212.00 Aligned_cols=301 Identities=18% Similarity=0.216 Sum_probs=214.9
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCC---CceEEEEc
Q 019359 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE---GPIVLVLA 107 (342)
Q Consensus 32 ~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~---~~~vlil~ 107 (342)
..+|+|-..++. |...+.+.|..+......+ .+.+++||||+|||.++++.+++.+....+...+- ..++.+++
T Consensus 294 selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 294 SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 467777777766 4446999999999876665 79999999999999999999999998765533222 35899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc---CCCCccEEEEeccc
Q 019359 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT---NLRRVTYLVLDEAD 184 (342)
Q Consensus 108 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~---~~~~~~~iIvDE~h 184 (342)
|.++|++.|...+.+.....|+.+....|+.+....... +..|+||||+..-- +.++.. ..+-++++|+||.|
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qie---eTqVIV~TPEK~Di-ITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIE---ETQVIVTTPEKWDI-ITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhh---cceeEEeccchhhh-hhcccCchhHHHHHHHHhhhhhh
Confidence 999999999998888778889999999998765444222 47899999997633 333221 23568999999999
Q ss_pred hhhcCCChHHHHHHHhhc-------CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhh
Q 019359 185 RMLDMGFEPQIRKIVTQI-------RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (342)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~-------~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (342)
.+.+ ..++.+..+..+. ...++.+++|||+|...+--.-.....+-.+.+.++. ++.+-.++++.+.....
T Consensus 448 LLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~sy-RpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 448 LLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSY-RPVPLKQQYIGITEKKP 525 (1674)
T ss_pred hccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCccc-CcCCccceEeccccCCc
Confidence 7544 3566665443332 3478999999999876433222122222333333333 33333344444333221
Q ss_pred ------HHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHh-------------------------------------
Q 019359 258 ------KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM------------------------------------- 294 (342)
Q Consensus 258 ------~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~------------------------------------- 294 (342)
..+...+-+-++...+++|||+.++++....++.++.
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 1223444444555578999999999988877776652
Q ss_pred CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 295 DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
..+.++++|++++..+|....+.|.+|.++|+++|..++.|+|+|.
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpa 651 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPA 651 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCc
Confidence 1234789999999999999999999999999999999999999995
No 89
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=1.2e-26 Score=193.00 Aligned_cols=288 Identities=22% Similarity=0.288 Sum_probs=201.9
Q ss_pred HHHHHHHH-cCCCCC-cHHHHhhHHHHhcC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHH
Q 019359 37 YCLEVIAK-LGFVEP-TPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (342)
Q Consensus 37 ~~~~~l~~-~~~~~l-~~~Q~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~ 113 (342)
.+.++|+. +|+..+ ++.|..++..+.++ +++.+++|||+||+++|-+|++.+ +...||+.|..+|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 34556665 677654 78999999887665 799999999999999999998876 55799999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhh---cCCCcEEEeChHHHHHHHhc----cccCCCCccEEEEecc
Q 019359 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDL---RRGVEIVIATPGRLIDMLEA----QHTNLRRVTYLVLDEA 183 (342)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~iiv~T~~~l~~~~~~----~~~~~~~~~~iIvDE~ 183 (342)
..+...+.++ .+++..+.+.-+..+.. .++ .-...+++.||+....-..+ ...+-..+.+++||||
T Consensus 75 kDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 75 KDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 9888888775 44444444433332221 122 22467999999865322111 1112234789999999
Q ss_pred chhhcCC--ChHHHHHH---HhhcCCCccEEEEEeecCchHHHHHHH--hcCCCeEEEecccccccccccceEEEEechh
Q 019359 184 DRMLDMG--FEPQIRKI---VTQIRPDRQTLYWSATWPREVETLARQ--FLRNPYKVIIGSLELKANQSINQVVEVVTEA 256 (342)
Q Consensus 184 h~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SaT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (342)
|.+..|| |++.+..+ .+.+ +....+.+|||..+.+...+.. -+..|..+...+.. +.+--++..+ ...-+
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F-R~NLFYD~~~-K~~I~ 227 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF-RDNLFYDNHM-KSFIT 227 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-hhhhhHHHHH-HHHhh
Confidence 9998876 77766654 3333 4778999999998877664433 34555544433322 1111111000 00012
Q ss_pred hHHHHHHHHHHhhcC------------CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCC
Q 019359 257 EKYNRLIKLLKEVMD------------GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP 324 (342)
Q Consensus 257 ~~~~~l~~~l~~~~~------------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 324 (342)
+-...|.++-..... .+-.||||.+++.++.++-.|...|++...||.++...+|..+.+.|-+++.+
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 333444444433221 24589999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCC
Q 019359 325 IMTATDVAARGLGRITVC 342 (342)
Q Consensus 325 vlv~t~~~~~Gidip~v~ 342 (342)
||+||..+++|+|-|+||
T Consensus 308 vI~AT~SFGMGVDKp~VR 325 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVR 325 (641)
T ss_pred EEEEEeccccccCCccee
Confidence 999999999999999986
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.5e-25 Score=206.50 Aligned_cols=277 Identities=22% Similarity=0.261 Sum_probs=199.3
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
+|. .+++.|.-..-.+..| -+..+.||+|||+++.++++..... |..+-|++|+..||.|..+++..+.
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 555 7778887765544444 4889999999999999988643333 3347799999999999999999999
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhcccc------CCCCccEEEEeccchhh-cCC------
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQHT------NLRRVTYLVLDEADRML-DMG------ 190 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~~------~~~~~~~iIvDE~h~~~-~~~------ 190 (342)
..+|+.+..+.++.+.......+ .++|+++|+..+ .+++..+.. ....+.++|+||++.++ +..
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 99999999999987776665554 389999999999 777776542 35678999999999832 100
Q ss_pred -------------------------------------------------------Ch----HHHHHHHhhc---------
Q 019359 191 -------------------------------------------------------FE----PQIRKIVTQI--------- 202 (342)
Q Consensus 191 -------------------------------------------------------~~----~~~~~~~~~~--------- 202 (342)
|. .....+.+.+
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 00 0000000000
Q ss_pred ----------------------------------------------------------CCCccEEEEEeecCchHHHHHH
Q 019359 203 ----------------------------------------------------------RPDRQTLYWSATWPREVETLAR 224 (342)
Q Consensus 203 ----------------------------------------------------------~~~~~~i~~SaT~~~~~~~~~~ 224 (342)
..-.++.+||+|....... ..
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E-~~ 383 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEE-FR 383 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHH-HH
Confidence 0012677888887654433 34
Q ss_pred HhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeec
Q 019359 225 QFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIH 303 (342)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~ 303 (342)
..++.....+ +...+...... ..........+...+.+.+.+. ..+.++||||+|++.++.+++.|.+.|+++..+|
T Consensus 384 ~iY~l~vv~I-Ptnkp~~r~d~-~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLn 461 (830)
T PRK12904 384 EIYNLDVVVI-PTNRPMIRIDH-PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLN 461 (830)
T ss_pred HHhCCCEEEc-CCCCCeeeeeC-CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEecc
Confidence 4444444322 22211111111 2233456667888888888763 3578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 304 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 304 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
+. ..+|+..+..|..++..|+|||+++++|+||+
T Consensus 462 ak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 462 AK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred Cc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 95 67899999999999999999999999999996
No 91
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.94 E-value=6.8e-26 Score=189.04 Aligned_cols=240 Identities=30% Similarity=0.474 Sum_probs=176.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHh---cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCcc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKF---GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVT 176 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 176 (342)
.+..+|+-|+++|++|+.+.+++| .....++...+.|+.....+...+..+.+|+|+||+++.+.+......++++.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 378899999999999999966655 34445566677788888888888899999999999999999999988899999
Q ss_pred EEEEeccchhhcCCChHHHHHHHhhcC------CCccEEEEEeecCc-hHHHHHHHhcCCCeEEEecccccccccccceE
Q 019359 177 YLVLDEADRMLDMGFEPQIRKIVTQIR------PDRQTLYWSATWPR-EVETLARQFLRNPYKVIIGSLELKANQSINQV 249 (342)
Q Consensus 177 ~iIvDE~h~~~~~~~~~~~~~~~~~~~------~~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
+++.||++.++..++.+.+.++...++ ...|.+.+|||+.. ++..+..+.++-|.-+.....+ ..+..+...
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhv 444 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHV 444 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccc
Confidence 999999999999899988888866664 24688999999743 2233344444444433332211 111111111
Q ss_pred EEE------------------------------echhhHHHHHH---------HHHHhhcCCCcEEEEeCCchhHHHHHH
Q 019359 250 VEV------------------------------VTEAEKYNRLI---------KLLKEVMDGSRILIFTETKKGCDQVTR 290 (342)
Q Consensus 250 ~~~------------------------------~~~~~~~~~l~---------~~l~~~~~~~~~lvf~~~~~~~~~l~~ 290 (342)
... ..+.+...... ..++++ ...++||||.++.+++.+.+
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHH
Confidence 110 00111111111 222232 35789999999999999999
Q ss_pred HHHhCC---CCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 291 QLRMDG---WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 291 ~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
++...| +.+..+||+..+.+|..-++.|+.++.+.||||+++++|+||..+
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~ 577 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGL 577 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCC
Confidence 998764 578899999999999999999999999999999999999999765
No 92
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.94 E-value=8.7e-25 Score=209.88 Aligned_cols=263 Identities=21% Similarity=0.289 Sum_probs=172.7
Q ss_pred cHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHH-HHHhhhcCCCccCCCCceEEEEcCc----HHHHHHHHHHHHH-hc
Q 019359 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLP-AFVHVSAQPRLVQGEGPIVLVLAPT----RELAVQIQEEALK-FG 124 (342)
Q Consensus 51 ~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~-~~~~~~~~~~~~~~~~~~vlil~p~----~~l~~q~~~~~~~-~~ 124 (342)
+.+..+++..+..++.+++.|+||||||+. +| ++...... ....+++.-|+ ++++.++.+++.. ++
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g------~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRG------VKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCC------CCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 445556777787888889999999999973 44 33322111 12245555675 4667777777664 44
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccc-hhhcCCChHH-HHHHHhhc
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD-RMLDMGFEPQ-IRKIVTQI 202 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h-~~~~~~~~~~-~~~~~~~~ 202 (342)
...|+.+. -+. ....+.+|+|+|++.|++.+..... +..+++||+|||| +.++.++... +..++..
T Consensus 148 ~~VGY~vr---f~~-------~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~- 215 (1294)
T PRK11131 148 GCVGYKVR---FND-------QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR- 215 (1294)
T ss_pred ceeceeec---Ccc-------ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-
Confidence 43343321 011 1123578999999999998876543 7899999999999 5667665532 3333222
Q ss_pred CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEech------hhHHHHHHHHHHhhc--CCCc
Q 019359 203 RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE------AEKYNRLIKLLKEVM--DGSR 274 (342)
Q Consensus 203 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~--~~~~ 274 (342)
.++.|+|+||||++. +.+...+...|. +.+.... ..+...+..... .+....+...+.... ..+.
T Consensus 216 rpdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 216 RPDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred CCCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 246799999999964 355554444443 3332211 112222222211 223334444333322 3578
Q ss_pred EEEEeCCchhHHHHHHHHHhCCCC---cEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 275 ILIFTETKKGCDQVTRQLRMDGWP---ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 275 ~lvf~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+|||+++.++++.+++.|++.+++ +..+||+++..+|..+++. .|..+|||||+++++|||+|+|+
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~ 357 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIK 357 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcce
Confidence 999999999999999999987765 5679999999999998876 47789999999999999999984
No 93
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.94 E-value=2.5e-24 Score=203.73 Aligned_cols=283 Identities=17% Similarity=0.137 Sum_probs=175.5
Q ss_pred CCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC
Q 019359 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~ 126 (342)
.|.|||.+++..+... .++|+...+|.|||..+.+.+...+... ...++||+||. .|..||..++.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g------~~~rvLIVvP~-sL~~QW~~El~~k--- 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG------RAERVLILVPE-TLQHQWLVEMLRR--- 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC------CCCcEEEEcCH-HHHHHHHHHHHHH---
Confidence 6999999998776543 5799999999999987655444333332 24679999996 8999999998642
Q ss_pred CCeEEEEEecCCcchhh--HHhhcCCCcEEEeChHHHHHHHh-ccccCCCCccEEEEeccchhhcCC--ChHHHHHHHhh
Q 019359 127 AGIRSTCIYGGAPKGPQ--IRDLRRGVEIVIATPGRLIDMLE-AQHTNLRRVTYLVLDEADRMLDMG--FEPQIRKIVTQ 201 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~~~-~~~~~~~~~~~iIvDE~h~~~~~~--~~~~~~~~~~~ 201 (342)
+++.+..+.++...... ........+++|+|++.+.+.-. .....-..++++|+||||++.... ....+..+...
T Consensus 222 F~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~L 301 (956)
T PRK04914 222 FNLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQL 301 (956)
T ss_pred hCCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHH
Confidence 23444444333211000 00111246899999988764211 011112468999999999986321 12233333333
Q ss_pred cCCCccEEEEEeecCc-hHH------------------HHHH-------------Hhc-CCC----------------e-
Q 019359 202 IRPDRQTLYWSATWPR-EVE------------------TLAR-------------QFL-RNP----------------Y- 231 (342)
Q Consensus 202 ~~~~~~~i~~SaT~~~-~~~------------------~~~~-------------~~~-~~~----------------~- 231 (342)
......++++||||.. ..+ .+.. .+. +.+ .
T Consensus 302 a~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~ 381 (956)
T PRK04914 302 AEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDI 381 (956)
T ss_pred hhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccch
Confidence 3345678999999742 111 0100 000 000 0
Q ss_pred --------------------------------EEEec--cccccc-ccccceEEEE------------------------
Q 019359 232 --------------------------------KVIIG--SLELKA-NQSINQVVEV------------------------ 252 (342)
Q Consensus 232 --------------------------------~~~~~--~~~~~~-~~~~~~~~~~------------------------ 252 (342)
.+.+. +..... +......+..
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~p 461 (956)
T PRK04914 382 EPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYP 461 (956)
T ss_pred hHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCH
Confidence 00000 000000 0000000000
Q ss_pred -------------echhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHH-HhCCCCcEeecCCCCHHHHHHHHHHH
Q 019359 253 -------------VTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQL-RMDGWPALSIHGDKNQSERDWVLAEF 318 (342)
Q Consensus 253 -------------~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f 318 (342)
.....|...+.++++.. .++|+||||+++..+..+++.| ...|+++..+||+++..+|..+++.|
T Consensus 462 e~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 462 EQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 00112444566666554 3689999999999999999999 46799999999999999999999999
Q ss_pred hcC--CCCEEEEecccccCCCCCCCC
Q 019359 319 RSG--RSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 319 ~~~--~~~vlv~t~~~~~Gidip~v~ 342 (342)
+++ ..+|||||+++++|+|++.++
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~ 566 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFAS 566 (956)
T ss_pred hcCCCCccEEEechhhccCCCccccc
Confidence 974 589999999999999998764
No 94
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=8.3e-24 Score=195.22 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=127.4
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCc
Q 019359 30 QEANFPDYCLEVIA-----KLGFVEP---TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGP 101 (342)
Q Consensus 30 ~~~~~~~~~~~~l~-----~~~~~~l---~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 101 (342)
+.|++.+.+.+.+. ..||..| +|+|.++++.+..+++++..++||+|||++|++|++..+.. +.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------GK 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--------cC
Confidence 45678888887766 5788888 99999999999999999999999999999999999987754 22
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhccccCCC-------
Q 019359 102 IVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQHTNLR------- 173 (342)
Q Consensus 102 ~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~~~~~------- 173 (342)
.++||+|+++|+.|..+++..+....++.+..+.|+.+.......+ .++|+|+||+.+ ++++..+...++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 4899999999999999999999988999999999998877766555 489999999999 999888755544
Q ss_pred CccEEEEeccchhh
Q 019359 174 RVTYLVLDEADRML 187 (342)
Q Consensus 174 ~~~~iIvDE~h~~~ 187 (342)
.+.++|+|||+.++
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 56899999999865
No 95
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.92 E-value=8.8e-23 Score=196.87 Aligned_cols=264 Identities=20% Similarity=0.262 Sum_probs=173.2
Q ss_pred HHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-hcCCCCeEEE
Q 019359 54 QAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRAGIRST 132 (342)
Q Consensus 54 Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~-~~~~~~~~~~ 132 (342)
..+++..+..++.+++.|+||||||+. +..++..... +...++++.-|++.-+..+.+.+.+ ++...|..+.
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTTq-lPq~lle~~~------~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTTQ-LPKICLELGR------GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHHH-HHHHHHHcCC------CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 356777787888899999999999973 3323322111 1134677788998888877766554 3333333333
Q ss_pred EE-ecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccc-hhhcCCChHH-HHHHHhhcCCCccEE
Q 019359 133 CI-YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD-RMLDMGFEPQ-IRKIVTQIRPDRQTL 209 (342)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h-~~~~~~~~~~-~~~~~~~~~~~~~~i 209 (342)
.- ..+... .....|.++|++.|++.+.... .+..+++||+||+| +.++.++.-. +..++.. .++.++|
T Consensus 145 Y~vR~~~~~-------s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlI 215 (1283)
T TIGR01967 145 YKVRFHDQV-------SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKII 215 (1283)
T ss_pred eEEcCCccc-------CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEE
Confidence 21 111111 2347899999999999887654 37889999999999 4666665543 4444333 3578999
Q ss_pred EEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEec------hhhHHHHHHHHHHhhc--CCCcEEEEeCC
Q 019359 210 YWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT------EAEKYNRLIKLLKEVM--DGSRILIFTET 281 (342)
Q Consensus 210 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~--~~~~~lvf~~~ 281 (342)
+||||+.. +.+...+...|. +.+.... ..+...+.... ..+....+...+.... ..+.+|||+++
T Consensus 216 lmSATld~--~~fa~~F~~apv-I~V~Gr~----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg 288 (1283)
T TIGR01967 216 ITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPG 288 (1283)
T ss_pred EEeCCcCH--HHHHHHhcCCCE-EEECCCc----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCC
Confidence 99999864 355554444443 3332211 11222222111 1123344445454432 35789999999
Q ss_pred chhHHHHHHHHHhCC---CCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 282 KKGCDQVTRQLRMDG---WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 282 ~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.++++.+++.|.+.+ ..+..+||+++.+++..+++.+ +..+|||||+++++|||+|+|+
T Consensus 289 ~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~ 350 (1283)
T TIGR01967 289 EREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIH 350 (1283)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCee
Confidence 999999999998764 3477899999999999886554 2468999999999999999984
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.4e-23 Score=193.43 Aligned_cols=277 Identities=20% Similarity=0.248 Sum_probs=194.8
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
+|. .+++.|.-.--.+ .+.-+..++||.|||++++++++..... +..|.|++|+..|+.|..+++..+.
T Consensus 79 lgm-~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 444 5666666443322 4556889999999999999998776655 4559999999999999999999999
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhcc-ccC-----CCCccEEEEeccchhhcCC-------
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ-HTN-----LRRVTYLVLDEADRMLDMG------- 190 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~-~~~-----~~~~~~iIvDE~h~~~~~~------- 190 (342)
..+|+.+.++.++.+.......+ .++|+++|+..+ ++++..+ ... ...+.++||||++.++-..
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y--~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLII 225 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAY--NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLII 225 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcC--CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceee
Confidence 99999999998887664333333 589999999998 7777765 222 2678999999999843211
Q ss_pred ----------Ch---H---------------------------------------HHHHHH---h---------------
Q 019359 191 ----------FE---P---------------------------------------QIRKIV---T--------------- 200 (342)
Q Consensus 191 ----------~~---~---------------------------------------~~~~~~---~--------------- 200 (342)
|. . .+..++ .
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~ 305 (908)
T PRK13107 226 SGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANIS 305 (908)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhH
Confidence 00 0 000100 0
Q ss_pred -------h------cCC-------------------------------------------------------------Cc
Q 019359 201 -------Q------IRP-------------------------------------------------------------DR 206 (342)
Q Consensus 201 -------~------~~~-------------------------------------------------------------~~ 206 (342)
. +.. -.
T Consensus 306 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (908)
T PRK13107 306 LLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYE 385 (908)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhh
Confidence 0 000 02
Q ss_pred cEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhc-CCCcEEEEeCCchhH
Q 019359 207 QTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGC 285 (342)
Q Consensus 207 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~ 285 (342)
++-+||+|.......+ ...++.....+-...+ .........+ ......+...+++.+.+.. .+.++||||.|++.+
T Consensus 386 kL~GMTGTa~te~~Ef-~~iY~l~Vv~IPTnkp-~~R~d~~d~i-y~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 386 KLAGMTGTADTEAFEF-QHIYGLDTVVVPTNRP-MVRKDMADLV-YLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred HhhcccCCChHHHHHH-HHHhCCCEEECCCCCC-ccceeCCCcE-EeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 5667777765544333 3344443332222111 1112222222 3445666667776666553 488999999999999
Q ss_pred HHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 286 DQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 286 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
+.++..|.+.|+++..+|+..++.++..+.+.|+.|. |+|||+++++|+||.
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 9999999999999999999999999999999999998 999999999999985
No 97
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.91 E-value=1.1e-22 Score=189.55 Aligned_cols=278 Identities=14% Similarity=0.163 Sum_probs=160.4
Q ss_pred CCcHHHHhhHHHHh----c------CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMAL----K------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~----~------~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~ 118 (342)
-++++|.+++..+. . .+..++++|||||||++++..+...+.. . ..+++|||+|+..|..||.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-~-----~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-L-----KNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-c-----CCCeEEEEECcHHHHHHHHH
Confidence 37889999987653 2 2579999999999999876655443321 1 26789999999999999999
Q ss_pred HHHHhcCCCCeEEEEEecCCcchhhHHhhc-CCCcEEEeChHHHHHHHhccc--cCCCCc-cEEEEeccchhhcCCChHH
Q 019359 119 EALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQH--TNLRRV-TYLVLDEADRMLDMGFEPQ 194 (342)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~--~~~~~~-~~iIvDE~h~~~~~~~~~~ 194 (342)
.+..++... . ....+.......+. ....|+|+|.+++.+.+.... ...... .+||+||||+.....+.
T Consensus 312 ~f~~~~~~~-~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~-- 383 (667)
T TIGR00348 312 EFQSLQKDC-A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA-- 383 (667)
T ss_pred HHHhhCCCC-C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH--
Confidence 999975321 0 11111111112222 236899999999986433211 111112 37999999986433222
Q ss_pred HHHHHhhcCCCccEEEEEeecCchHHHHHHHhc----CCCeEEEecccccccccc----------------------cce
Q 019359 195 IRKIVTQIRPDRQTLYWSATWPREVETLARQFL----RNPYKVIIGSLELKANQS----------------------INQ 248 (342)
Q Consensus 195 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----------------------~~~ 248 (342)
..+.+.+ ++...+++||||...........+ +.+.....-......... ...
T Consensus 384 -~~l~~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 384 -KNLKKAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred -HHHHhhC-CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 2233344 467899999998542111111111 111111000000000000 000
Q ss_pred EEEEe-----------------------chhhHHHHHHHHHHhh----cC--CCcEEEEeCCchhHHHHHHHHHhC----
Q 019359 249 VVEVV-----------------------TEAEKYNRLIKLLKEV----MD--GSRILIFTETKKGCDQVTRQLRMD---- 295 (342)
Q Consensus 249 ~~~~~-----------------------~~~~~~~~l~~~l~~~----~~--~~~~lvf~~~~~~~~~l~~~L~~~---- 295 (342)
..... ..+.....++..+.++ .. +.|++|+|.++.+|..+.+.|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 00000 0001112222222222 12 489999999999999999998664
Q ss_pred -CCCcEeecCCCCHH---------------------HHHHHHHHHhc-CCCCEEEEecccccCCCCCCCC
Q 019359 296 -GWPALSIHGDKNQS---------------------ERDWVLAEFRS-GRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 296 -~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+.....+++..+.. ....++++|++ ++++|||+++++.+|+|.|.++
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~ 611 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILN 611 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccc
Confidence 23344555543322 22468889975 6889999999999999999874
No 98
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.91 E-value=3e-23 Score=186.83 Aligned_cols=273 Identities=18% Similarity=0.186 Sum_probs=173.4
Q ss_pred CCCCcHHHHhhHHHHh----cC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 019359 47 FVEPTPIQAQGWPMAL----KG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (342)
Q Consensus 47 ~~~l~~~Q~~~~~~~~----~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~ 121 (342)
-..+|.||..++..+. +| +.+|++|+||+|||.+++. ++.++.... .-++||+|+.+++|+.|....+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~-----~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSG-----WVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcc-----hhheeeEEechHHHHHHHHHHHH
Confidence 3478999999987654 44 4699999999999998555 444444432 26789999999999999999999
Q ss_pred HhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcc-----ccCCCCccEEEEeccchhhcCCChHHHH
Q 019359 122 KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-----HTNLRRVTYLVLDEADRMLDMGFEPQIR 196 (342)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~~~~~~~iIvDE~h~~~~~~~~~~~~ 196 (342)
.+.+. +-.+..+.+..... .+.|.++|++++....... .+....||+||+||||+-. ...+.
T Consensus 237 ~~~P~-~~~~n~i~~~~~~~--------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~ 303 (875)
T COG4096 237 DFLPF-GTKMNKIEDKKGDT--------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWS 303 (875)
T ss_pred HhCCC-ccceeeeecccCCc--------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhH
Confidence 98765 33333333322221 4789999999999877665 2234579999999999853 33444
Q ss_pred HHHhhcCCCccEEEEEeecCchHHHHHHHhc-CCCeEEEecccccc-----------------------------cc---
Q 019359 197 KIVTQIRPDRQTLYWSATWPREVETLARQFL-RNPYKVIIGSLELK-----------------------------AN--- 243 (342)
Q Consensus 197 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------------------------~~--- 243 (342)
.++.++.. ..+++||||....+..--.++ +.|...+.-..... ..
T Consensus 304 ~I~dYFdA--~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g 381 (875)
T COG4096 304 SILDYFDA--ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQG 381 (875)
T ss_pred HHHHHHHH--HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhc
Confidence 66666643 335559998775544444444 44333222100000 00
Q ss_pred ccc--c-eEEEEec------hhhHHHHHHHHHHhhcC-------CCcEEEEeCCchhHHHHHHHHHhCC-----CCcEee
Q 019359 244 QSI--N-QVVEVVT------EAEKYNRLIKLLKEVMD-------GSRILIFTETKKGCDQVTRQLRMDG-----WPALSI 302 (342)
Q Consensus 244 ~~~--~-~~~~~~~------~~~~~~~l~~~l~~~~~-------~~~~lvf~~~~~~~~~l~~~L~~~~-----~~~~~~ 302 (342)
..+ + ..+.... -......+...+...+. -+|+||||.+..||+.+...|.+.. --+..+
T Consensus 382 ~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~I 461 (875)
T COG4096 382 EAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKI 461 (875)
T ss_pred cccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEE
Confidence 000 0 0000000 00122223333333222 3589999999999999999998653 235567
Q ss_pred cCCCCHHHHHHHHHHHhc-CC-CCEEEEecccccCCCCCCCC
Q 019359 303 HGDKNQSERDWVLAEFRS-GR-SPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~-~~-~~vlv~t~~~~~Gidip~v~ 342 (342)
+++.. +-...+..|.. .+ ..|.++.+++..|+|+|.|+
T Consensus 462 T~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~ 501 (875)
T COG4096 462 TGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVV 501 (875)
T ss_pred eccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchhee
Confidence 77654 34556667755 33 45888889999999999874
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.1e-22 Score=188.39 Aligned_cols=283 Identities=19% Similarity=0.276 Sum_probs=203.7
Q ss_pred HHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 019359 40 EVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (342)
Q Consensus 40 ~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~ 119 (342)
..-...+| .|.++|++++..+.+++++++++|||+|||+++-.++...+.. +.++++.+|.++|.+|-++.
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHH
Confidence 44556888 9999999999999999999999999999999987777666655 66799999999999998887
Q ss_pred HHH-hcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHH
Q 019359 120 ALK-FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKI 198 (342)
Q Consensus 120 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~ 198 (342)
+.. |++. .-.+..+.|+.+... +..++|.|.+-|.+++..+...+..+..||+||+|.+.+...+..+...
T Consensus 182 l~~~fgdv-~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~ 253 (1041)
T COG4581 182 LLAKFGDV-ADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEV 253 (1041)
T ss_pred HHHHhhhh-hhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHH
Confidence 764 4333 223445556555433 3789999999999998888888899999999999999999899999999
Q ss_pred HhhcCCCccEEEEEeecCchHHH--HHHHhcCCCeEEEeccccccc-ccc--c-ceEEEEechhhH--------------
Q 019359 199 VTQIRPDRQTLYWSATWPREVET--LARQFLRNPYKVIIGSLELKA-NQS--I-NQVVEVVTEAEK-------------- 258 (342)
Q Consensus 199 ~~~~~~~~~~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~-------------- 258 (342)
+-.++...+++++|||.+...+- .+...-..+..+++...-+.+ ... . ...+...++..+
T Consensus 254 Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 254 IILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred HHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 99999999999999998776432 222222333333332211000 000 0 011111111110
Q ss_pred ---------------------------------HHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHh-----------
Q 019359 259 ---------------------------------YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM----------- 294 (342)
Q Consensus 259 ---------------------------------~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----------- 294 (342)
...+...+... ..-++|+|+-+++.|+..+..+..
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~-~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD-NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhh-cCCceEEEEEchhhHHHHHHHhcccccccCCcHHH
Confidence 01111111111 234799999999999988876652
Q ss_pred -----------------CCCC-------------cEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 295 -----------------DGWP-------------ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 295 -----------------~~~~-------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
.+++ ++++|+++=+..+..+...|..|-.+|+++|..++.|+|.|.
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa 488 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488 (1041)
T ss_pred HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc
Confidence 1221 357899999999999999999999999999999999999984
No 100
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=7.7e-22 Score=180.70 Aligned_cols=271 Identities=25% Similarity=0.332 Sum_probs=182.7
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|+ .||..|+-....+.+|+++.+.||||.|||.-.++.++-.... |.++++++||..|+.|+.+.+++|+
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k--------gkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK--------GKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc--------CCeEEEEecCHHHHHHHHHHHHHHH
Confidence 466 9999999999999999999999999999996444333322222 7789999999999999999999998
Q ss_pred CCCC-eEEEE-EecCCcch---hhHHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC--------
Q 019359 125 SRAG-IRSTC-IYGGAPKG---PQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-------- 190 (342)
Q Consensus 125 ~~~~-~~~~~-~~~~~~~~---~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-------- 190 (342)
...+ ..+.. .|+.-+.. +....+.+ ++||+|+|.+-|...+..-.- -+||++++|.++.++..+
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhccccHHHHHH
Confidence 7665 33333 45542222 22344443 599999999877665543211 359999999999865322
Q ss_pred ---ChHH-------HHHH----------------Hh--------hcCCCccEEEEEeecCchH--HHHHHHhcCCCeEEE
Q 019359 191 ---FEPQ-------IRKI----------------VT--------QIRPDRQTLYWSATWPREV--ETLARQFLRNPYKVI 234 (342)
Q Consensus 191 ---~~~~-------~~~~----------------~~--------~~~~~~~~i~~SaT~~~~~--~~~~~~~~~~~~~~~ 234 (342)
|... +..+ .. .-.+..++++.|||..+.- ..+.+.+++-..
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev--- 304 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV--- 304 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc---
Confidence 1110 0001 00 0124568899999974432 223333333211
Q ss_pred ecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCC---chhHHHHHHHHHhCCCCcEeecCCCCHHHH
Q 019359 235 IGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTET---KKGCDQVTRQLRMDGWPALSIHGDKNQSER 311 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~---~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 311 (342)
..........++.+. .. .....+.++++.. +...|||++. ++.++.+++.|++.|+++..+|++.
T Consensus 305 -G~~~~~LRNIvD~y~-~~---~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~----- 372 (1187)
T COG1110 305 -GSGGEGLRNIVDIYV-ES---ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK----- 372 (1187)
T ss_pred -Cccchhhhheeeeec-cC---ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc-----
Confidence 111111111112111 11 4455566666665 5567999999 9999999999999999999999842
Q ss_pred HHHHHHHhcCCCCEEEEe----cccccCCCCCCC
Q 019359 312 DWVLAEFRSGRSPIMTAT----DVAARGLGRITV 341 (342)
Q Consensus 312 ~~~~~~f~~~~~~vlv~t----~~~~~Gidip~v 341 (342)
...++.|..|++++||++ ..+-+|+|+|..
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~r 406 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHR 406 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhh
Confidence 778999999999999998 568899999974
No 101
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=8.9e-21 Score=182.29 Aligned_cols=297 Identities=20% Similarity=0.172 Sum_probs=181.7
Q ss_pred CHHHHHHHHHcCCCCCcHHHHhhHH----HHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcH
Q 019359 35 PDYCLEVIAKLGFVEPTPIQAQGWP----MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (342)
Q Consensus 35 ~~~~~~~l~~~~~~~l~~~Q~~~~~----~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~ 110 (342)
++...+.+...|| ++|+.|.+.+. .+..++++++.||||+|||++|+++++..... +.+++|.+||+
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t~ 302 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNTK 302 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCcH
Confidence 3456667777888 68999998655 55567899999999999999999998876652 45799999999
Q ss_pred HHHHHHHH-HHHHhcCCCC--eEEEEEecCCcchh----------------------------------h----------
Q 019359 111 ELAVQIQE-EALKFGSRAG--IRSTCIYGGAPKGP----------------------------------Q---------- 143 (342)
Q Consensus 111 ~l~~q~~~-~~~~~~~~~~--~~~~~~~~~~~~~~----------------------------------~---------- 143 (342)
+|..|+.. .+..+....+ +++..+.|..+.-. .
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999854 4544433222 44444443321100 0
Q ss_pred ---------------------------HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC------
Q 019359 144 ---------------------------IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG------ 190 (342)
Q Consensus 144 ---------------------------~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~------ 190 (342)
.+.....++|+|+++..++..+.....-+...+++||||||++.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcc
Confidence 01112247899999998887764443334567899999999854210
Q ss_pred -C-----hH----------------------------------------------------------------HHHHHHh
Q 019359 191 -F-----EP----------------------------------------------------------------QIRKIVT 200 (342)
Q Consensus 191 -~-----~~----------------------------------------------------------------~~~~~~~ 200 (342)
. .. .+.....
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0 00 0000000
Q ss_pred h--------------------------------c----------------CCCccEEEEEeecCch-HHHHHHHhcCCCe
Q 019359 201 Q--------------------------------I----------------RPDRQTLYWSATWPRE-VETLARQFLRNPY 231 (342)
Q Consensus 201 ~--------------------------------~----------------~~~~~~i~~SaT~~~~-~~~~~~~~~~~~~ 231 (342)
. + +....+|++|||+... -.......++.+.
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 0124678999998632 1233444444321
Q ss_pred E--EEecccccccccccceEEE-------EechhhHHHHHHHHHHhhc--CCCcEEEEeCCchhHHHHHHHHHhCC--CC
Q 019359 232 K--VIIGSLELKANQSINQVVE-------VVTEAEKYNRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMDG--WP 298 (342)
Q Consensus 232 ~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~--~~ 298 (342)
. ....+++.........++. ..+.+.....+.+.+.+.. .++++|||++|.+.++.++..|.+.. ..
T Consensus 623 ~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~ 702 (850)
T TIGR01407 623 VHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEG 702 (850)
T ss_pred cccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccC
Confidence 1 1111111110111111110 0122334445666665543 36789999999999999999997521 11
Q ss_pred cEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 299 ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 299 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
..++..+.. ..|..++++|++++..||++|+.+.||||+|+.
T Consensus 703 ~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~ 744 (850)
T TIGR01407 703 YEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGN 744 (850)
T ss_pred ceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCC
Confidence 223333333 478899999999999999999999999999975
No 102
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=1.2e-21 Score=177.68 Aligned_cols=273 Identities=19% Similarity=0.195 Sum_probs=198.7
Q ss_pred HHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 43 AKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 43 ~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
..++| ++...|++++-.+.+|.++++.|+|.+|||.++-.++...-. ++.|++|-+|-++|-+|-.+.|++
T Consensus 292 ~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred hhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHH
Confidence 35788 899999999999999999999999999999986554433221 267899999999999998887776
Q ss_pred hcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc
Q 019359 123 FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (342)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (342)
--...| .+.|+.+..++ +.++|.|.+-|.+++.++..-+.++.+||+||+|.+.+...+-.|..++=.+
T Consensus 363 tF~Dvg----LlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 363 TFGDVG----LLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML 431 (1248)
T ss_pred hccccc----eeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec
Confidence 322223 67777766555 7899999999999999888888899999999999999988899999999999
Q ss_pred CCCccEEEEEeecCchHHHHHHHh---cCCCeEEEecccccccccccceEEEEe--------------------------
Q 019359 203 RPDRQTLYWSATWPREVETLARQF---LRNPYKVIIGSLELKANQSINQVVEVV-------------------------- 253 (342)
Q Consensus 203 ~~~~~~i~~SaT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 253 (342)
|...++|++|||.+...+ ++.+. -+..+.++.. . +.+.....++...
T Consensus 432 P~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST-~--kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPNTLE-FADWIGRTKQKTIYVIST-S--KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred cccceEEEEeccCCChHH-HHHHhhhccCceEEEEec-C--CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 999999999999887653 33322 1111111111 0 0000000000000
Q ss_pred -------------------------------------ch--hh---HHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHH
Q 019359 254 -------------------------------------TE--AE---KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQ 291 (342)
Q Consensus 254 -------------------------------------~~--~~---~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~ 291 (342)
.. .. ....++..+... +-=+++|||-+++.|+..+++
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-ccCceEEEEEccccHHHHHHH
Confidence 00 00 112222222221 123799999999999999999
Q ss_pred HHhCCC---------------------------------------CcEeecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019359 292 LRMDGW---------------------------------------PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 332 (342)
Q Consensus 292 L~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 332 (342)
|...+. .++++||+.=+--++-+.-.|..|-.+||+||..+
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 864111 15678999888888999999999999999999999
Q ss_pred ccCCCCCC
Q 019359 333 ARGLGRIT 340 (342)
Q Consensus 333 ~~Gidip~ 340 (342)
+.|+|-|.
T Consensus 667 AMGVNMPA 674 (1248)
T KOG0947|consen 667 AMGVNMPA 674 (1248)
T ss_pred hhhcCCCc
Confidence 99999985
No 103
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.89 E-value=3e-21 Score=155.62 Aligned_cols=187 Identities=44% Similarity=0.662 Sum_probs=147.7
Q ss_pred HcCCCCCcHHHHhhHHHHhcC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 44 KLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
..++..++++|.+++..+... ++.++.+|||+|||.+++..++..+.... ..++++++|+..++.||...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHH
Confidence 346678999999999999888 99999999999999988887777766532 35799999999999999999998
Q ss_pred hcCCCCeEEEEEecCCcchhhHHhhcCCC-cEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhh
Q 019359 123 FGSRAGIRSTCIYGGAPKGPQIRDLRRGV-EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (342)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (342)
+............++............+. +++++|++.+.+...........++++|+||+|.+....+...+..+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 76655434444444444344444444555 99999999999988876666678999999999998765677888888887
Q ss_pred cCCCccEEEEEeecCchHHHHHHHhcCCCeEEEec
Q 019359 202 IRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (342)
Q Consensus 202 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
.++..+++++|||++.........+......+...
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 77789999999999888878877777755554443
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.9e-21 Score=178.99 Aligned_cols=277 Identities=21% Similarity=0.259 Sum_probs=191.5
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|. .|++.|.-..-.+..|+ +..+.||.|||+++.++++..... |..+-+++|+..||.|-++++..+.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 555 78888877655544444 899999999999998888777666 6679999999999999999999999
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHH-HHHhcc------ccCCCCccEEEEeccchhh-cCC------
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DMLEAQ------HTNLRRVTYLVLDEADRML-DMG------ 190 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~------~~~~~~~~~iIvDE~h~~~-~~~------ 190 (342)
..+|+.+..+.++.+.......+ .++|+++|...+- +++..+ ......+.+.||||++.++ +..
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLii 223 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLII 223 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceec
Confidence 99999999998876555443333 4799999987652 223322 1123568899999999732 100
Q ss_pred ------ChH-------HHH---------------------------------------H------------------HHh
Q 019359 191 ------FEP-------QIR---------------------------------------K------------------IVT 200 (342)
Q Consensus 191 ------~~~-------~~~---------------------------------------~------------------~~~ 200 (342)
... .+. . +.+
T Consensus 224 sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~ 303 (796)
T PRK12906 224 SGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQ 303 (796)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHH
Confidence 000 000 0 000
Q ss_pred hc------C-------------------------------------------------------------CCccEEEEEe
Q 019359 201 QI------R-------------------------------------------------------------PDRQTLYWSA 213 (342)
Q Consensus 201 ~~------~-------------------------------------------------------------~~~~~i~~Sa 213 (342)
.+ . .-.++.+||+
T Consensus 304 Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTG 383 (796)
T PRK12906 304 ALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTG 383 (796)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCC
Confidence 00 0 0026678888
Q ss_pred ecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHH
Q 019359 214 TWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQL 292 (342)
Q Consensus 214 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L 292 (342)
|.......+ ...++.+... ++...+...... ......+...+...+.+.+.+. ..+.++||||+|++.++.+++.|
T Consensus 384 Ta~~e~~Ef-~~iY~l~vv~-IPtnkp~~r~d~-~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L 460 (796)
T PRK12906 384 TAKTEEEEF-REIYNMEVIT-IPTNRPVIRKDS-PDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLL 460 (796)
T ss_pred CCHHHHHHH-HHHhCCCEEE-cCCCCCeeeeeC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 875443333 4445544433 322211111111 2223345566777888777654 45889999999999999999999
Q ss_pred HhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 293 RMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
.+.|+++..+|+++.+.++..+.+.++.|. |+|||+++++|+||+
T Consensus 461 ~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~ 505 (796)
T PRK12906 461 DEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIK 505 (796)
T ss_pred HHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCC
Confidence 999999999999999888888887777776 999999999999995
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=177.64 Aligned_cols=297 Identities=21% Similarity=0.261 Sum_probs=204.0
Q ss_pred CCCHHHHHH-HHHcCCCCCcHHHHhhH--HHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc
Q 019359 33 NFPDYCLEV-IAKLGFVEPTPIQAQGW--PMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (342)
Q Consensus 33 ~~~~~~~~~-l~~~~~~~l~~~Q~~~~--~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~ 109 (342)
.+++...+. ....|...++.+|.+++ +.+..+.+.++.+||+.|||+++-+.++..+... ...++++.|.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~ 278 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPY 278 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecce
Confidence 345555554 44578889999999987 4577789999999999999999988888877664 4568999999
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcc--ccCCCCccEEEEeccchhh
Q 019359 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ--HTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 110 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIvDE~h~~~ 187 (342)
...+..-...+..|....|+.+....|..+...... .-.+.|+|.++-+.++..- ...+..+++|||||.|.+.
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k----~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRK----RESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCccc----ceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 999888888888898899999888886655544433 3679999999866544331 1234568999999999999
Q ss_pred cCCChHHHHHHHhhc-----CCCccEEEEEeecCchHHHHHHHhcCCCeEE-EecccccccccccceEEEEechhhHH--
Q 019359 188 DMGFEPQIRKIVTQI-----RPDRQTLYWSATWPREVETLARQFLRNPYKV-IIGSLELKANQSINQVVEVVTEAEKY-- 259 (342)
Q Consensus 188 ~~~~~~~~~~~~~~~-----~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 259 (342)
+.+.+..+..++... ....|+|+||||++.- .+...++...... .+.+.+....................
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHH
Confidence 988877776665433 2335799999998653 2333333322111 12222211111111111111111111
Q ss_pred --------------HHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhC-----------------------------
Q 019359 260 --------------NRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMD----------------------------- 295 (342)
Q Consensus 260 --------------~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~----------------------------- 295 (342)
+.++....+. .++.++||||++++.++.++..+...
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 1222222222 23567999999999999888555320
Q ss_pred ---------CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 296 ---------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 296 ---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
...+.++|.+...++|+.+...|++|...|+.||+.++.|+++|.-+
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArR 568 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARR 568 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcce
Confidence 12267888999999999999999999999999999999999999753
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=2.9e-21 Score=182.06 Aligned_cols=287 Identities=16% Similarity=0.165 Sum_probs=185.4
Q ss_pred CCcHHHHhhHHHHhcC---C-CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMALKG---R-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~---~-~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
..++.|..++..+... + .+++.||||+|||.+.+.++...+... . ....+++++.|.+.+++++.+.++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~---~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-I---KLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-c---cccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3588899998877653 4 688999999999999888887777663 1 127789999999999999999999865
Q ss_pred CCCCeEEEEEecCCcchhhHHh-------------h-cCCCcEEEeChHHHHHHHhc-cccC-C--CCccEEEEeccchh
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRD-------------L-RRGVEIVIATPGRLIDMLEA-QHTN-L--RRVTYLVLDEADRM 186 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~iiv~T~~~l~~~~~~-~~~~-~--~~~~~iIvDE~h~~ 186 (342)
...+......++.......... . .....++++|+......... .... + -..+.+|+||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 5444333322333221111100 0 00133445555444432111 1111 0 12468999999987
Q ss_pred hcCCChHHHHHHHhhc-CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccce-EEEEechhhH--HHHH
Q 019359 187 LDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQ-VVEVVTEAEK--YNRL 262 (342)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~l 262 (342)
........+..++..+ ..+..+++||||+|..+.......+.....+............... .......... ....
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 6653333333333333 3578899999999999988888777766555544221100000000 0000111111 1122
Q ss_pred HHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHh----cCCCCEEEEecccccCCCC
Q 019359 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFR----SGRSPIMTATDVAARGLGR 338 (342)
Q Consensus 263 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vlv~t~~~~~Gidi 338 (342)
........++++++|.|||+..|..+++.|++.+.++..+|+.+...+|.+.++.+. .++..|+|||++++.|+|+
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 223333445899999999999999999999998878999999999999999888654 4678899999999999998
Q ss_pred C
Q 019359 339 I 339 (342)
Q Consensus 339 p 339 (342)
.
T Consensus 511 d 511 (733)
T COG1203 511 D 511 (733)
T ss_pred c
Confidence 3
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.88 E-value=1.2e-20 Score=179.66 Aligned_cols=280 Identities=20% Similarity=0.224 Sum_probs=178.0
Q ss_pred CCcHHHHhhHHHHh----cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~----~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|++||.+.+.++. ++.+.|+...||.|||+.++. ++..+.... +....+|||||. .+..||.+++.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999998764 567899999999999986443 344433211 113468999996 55689999999997
Q ss_pred CCCCeEEEEEecCCcchhhHH---hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhh
Q 019359 125 SRAGIRSTCIYGGAPKGPQIR---DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (342)
+. +.+..++|......... .....++|+|+|++.+...... +.--.+++||+||||++-+.. ......+..
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~~--Sklskalr~ 316 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNEN--SLLSKTMRL 316 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCHH--HHHHHHHHH
Confidence 64 56666777654332221 1123589999999988764321 112348899999999986642 333444444
Q ss_pred cCCCccEEEEEeecCc-hHHHHHHH--hcCC---------------------------------CeEEEecccc--cccc
Q 019359 202 IRPDRQTLYWSATWPR-EVETLARQ--FLRN---------------------------------PYKVIIGSLE--LKAN 243 (342)
Q Consensus 202 ~~~~~~~i~~SaT~~~-~~~~~~~~--~~~~---------------------------------~~~~~~~~~~--~~~~ 243 (342)
+. ....+++||||-. .+..+... ++.. |....-.... ...+
T Consensus 317 L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 53 4567889999732 11111110 0000 0000000000 0000
Q ss_pred cccceEEEE--------------------------------------------------------------echhhHHHH
Q 019359 244 QSINQVVEV--------------------------------------------------------------VTEAEKYNR 261 (342)
Q Consensus 244 ~~~~~~~~~--------------------------------------------------------------~~~~~~~~~ 261 (342)
+.....+.+ .....+...
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 000000000 011233334
Q ss_pred HHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCC---CCEEEEecccccCCC
Q 019359 262 LIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR---SPIMTATDVAARGLG 337 (342)
Q Consensus 262 l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~t~~~~~Gid 337 (342)
+..++.+.. .+.|+|||+........+.++|...++.+..++|+++..+|..+++.|+... .-+|++|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 444444433 3679999999999999999999999999999999999999999999997533 347899999999999
Q ss_pred CCCC
Q 019359 338 RITV 341 (342)
Q Consensus 338 ip~v 341 (342)
+...
T Consensus 556 Lt~A 559 (1033)
T PLN03142 556 LATA 559 (1033)
T ss_pred hhhC
Confidence 8764
No 108
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=7.2e-22 Score=175.04 Aligned_cols=273 Identities=19% Similarity=0.256 Sum_probs=199.9
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-h
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-F 123 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~-~ 123 (342)
..| .|.|.|..++..+-++++++++|.|.+|||.++-.++...+.. +.||++-.|-++|.+|-++++.. |
T Consensus 126 YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 126 YPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred CCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHh
Confidence 455 7899999999999999999999999999999988877777666 66899999999999998887765 3
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcC
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (342)
.+ +....|+....+. +..+|.|.+-|...+.++..-+..+.++|+||+|.|-+...+-.|..-+-.++
T Consensus 197 ~D-----VGLMTGDVTInP~-------ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP 264 (1041)
T KOG0948|consen 197 KD-----VGLMTGDVTINPD-------ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP 264 (1041)
T ss_pred cc-----cceeecceeeCCC-------CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc
Confidence 22 2334444443332 66899999999998888877778899999999999988887777777777788
Q ss_pred CCccEEEEEeecCchHHHHHHH---hcCCCeEEEeccccccccccc------ceEEEEechh-----h------------
Q 019359 204 PDRQTLYWSATWPREVETLARQ---FLRNPYKVIIGSLELKANQSI------NQVVEVVTEA-----E------------ 257 (342)
Q Consensus 204 ~~~~~i~~SaT~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-----~------------ 257 (342)
.+.+.+++|||+|...+ ++.+ .-..|..+.+.+.-+.+-..+ +-.+...+.. +
T Consensus 265 ~~vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNARQ-FAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred ccceEEEEeccCCCHHH-HHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 99999999999987653 3333 334555555543322211111 1111111111 1
Q ss_pred --------------------------HHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCC--------------
Q 019359 258 --------------------------KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGW-------------- 297 (342)
Q Consensus 258 --------------------------~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-------------- 297 (342)
.+..+..++-.. ...++|||+-++++|+.++-.+.+..+
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~ 422 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFN 422 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHH
Confidence 122233333222 245899999999999999966654211
Q ss_pred -------------------------CcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 298 -------------------------PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 298 -------------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
.++++|+++=+--++.+.=.|++|-+++|+||..++.|+|-|.
T Consensus 423 nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA 490 (1041)
T KOG0948|consen 423 NAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA 490 (1041)
T ss_pred HHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc
Confidence 1578899988878888888999999999999999999999985
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1e-19 Score=166.84 Aligned_cols=275 Identities=19% Similarity=0.243 Sum_probs=180.9
Q ss_pred CCCcHHHHhhHHHHhcC----CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 48 VEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~----~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
..+.+.|..+++.+... ...++.|.||+|||.+|+-.+...+.. |..+|+|+|-.+|..|+.+.++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~- 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKA- 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHH-
Confidence 36788899999888665 679999999999999988877666665 77899999999999999888886
Q ss_pred cCCCCeEEEEEecCCcchhhHHhh----cCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC-----ChHH
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDL----RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----FEPQ 194 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~~~~ 194 (342)
.++.++..++++-+..+..+.+ .....|+|+|-..+. .++.++++|||||-|.-.... |...
T Consensus 268 --rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 268 --RFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred --HhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHH
Confidence 2456777788776665553333 345899999954332 356779999999999754322 2222
Q ss_pred HHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhh-----HHHHHHHHHHhh
Q 019359 195 IRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE-----KYNRLIKLLKEV 269 (342)
Q Consensus 195 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~ 269 (342)
-..++.....++.+|+-||||.- +......-+.....................+....+.. .-..+++.+++.
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCCH--HHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 22233333457889999999754 34444333322333332221111111112222222222 225666777665
Q ss_pred cC-CCcEEEEeCCchhHHH------------------------------------------------------------H
Q 019359 270 MD-GSRILIFTETKKGCDQ------------------------------------------------------------V 288 (342)
Q Consensus 270 ~~-~~~~lvf~~~~~~~~~------------------------------------------------------------l 288 (342)
.. ++++|+|.|.+..+-. +
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 54 7888888886554433 2
Q ss_pred HHHHHhC--CCCcEeecCCCCH--HHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 289 TRQLRMD--GWPALSIHGDKNQ--SERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 289 ~~~L~~~--~~~~~~~~~~~~~--~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
++.|++. +.++..+.++... ..-+..+..|.+|+.+|||+|.+++.|.|+|+|.
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vt 554 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVT 554 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccce
Confidence 3333332 3456666665443 2356789999999999999999999999999974
No 110
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.85 E-value=2.6e-20 Score=159.94 Aligned_cols=130 Identities=23% Similarity=0.268 Sum_probs=106.4
Q ss_pred CccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhc-CCCcEEEEeCCch
Q 019359 205 DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKK 283 (342)
Q Consensus 205 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~ 283 (342)
.+|+|++||||.+..-.... +.-....+ ++..-++..+...+....++.|+..+++.. .+++++|-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiI-----RPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQII-----RPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEee-----cCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999998764322211 12222222 344556667777788888888888887754 4899999999999
Q ss_pred hHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 284 GCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 284 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.|+.+.++|.+.|+++.++|++...-+|..+++..+.|.++|||+.+.+.+|+|+|.|+
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVs 516 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVS 516 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999984
No 111
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.84 E-value=9.6e-19 Score=162.84 Aligned_cols=270 Identities=19% Similarity=0.237 Sum_probs=182.2
Q ss_pred CcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-hcCCCC
Q 019359 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRAG 128 (342)
Q Consensus 50 l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~-~~~~~~ 128 (342)
.+....+++..+.+++.+++.|+||+|||+. +.-.+..... +.+..+.+.-|++.-+...++.+.+ ++...|
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTq-lP~~lle~g~------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQ-LPQFLLEEGL------GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHH-HHHHHHhhhc------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 3556667788888899999999999999974 3333322221 1256889999999888777766553 444434
Q ss_pred eEEEEEec-CCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch-hhcCCC-hHHHHHHHhhcCCC
Q 019359 129 IRSTCIYG-GAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR-MLDMGF-EPQIRKIVTQIRPD 205 (342)
Q Consensus 129 ~~~~~~~~-~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~-~~~~~~-~~~~~~~~~~~~~~ 205 (342)
-.+..-.- +... .....|-+.|.+.|++.++.... ++.+++||+||+|. .++-++ ...+..+....+.+
T Consensus 124 ~~VGY~iRfe~~~-------s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 124 ETVGYSIRFESKV-------SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred ceeeEEEEeeccC-------CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCC
Confidence 33322111 1111 11367999999999999887654 78899999999995 222221 22334445555667
Q ss_pred ccEEEEEeecCchHHHHHHHhcCC-CeEEEecccccccccccceEE-EEechhh-HHHHHHHHHHhhcC--CCcEEEEeC
Q 019359 206 RQTLYWSATWPREVETLARQFLRN-PYKVIIGSLELKANQSINQVV-EVVTEAE-KYNRLIKLLKEVMD--GSRILIFTE 280 (342)
Q Consensus 206 ~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~l~~~~~--~~~~lvf~~ 280 (342)
-++|.||||+..+ ++ ..++++ |....-.+. ..++.++ ....... ....+...+..+.. .+-+|||.+
T Consensus 196 LKiIimSATld~~--rf-s~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLp 267 (845)
T COG1643 196 LKLIIMSATLDAE--RF-SAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLP 267 (845)
T ss_pred ceEEEEecccCHH--HH-HHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECC
Confidence 8999999998763 44 445554 443332222 1222222 1111222 44555555555544 567999999
Q ss_pred CchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 281 TKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 281 ~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
...+.+..++.|.+ ....+.-+||.++.+++..+++--..|..+|+++|++++.+|.||+|+
T Consensus 268 G~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr 333 (845)
T COG1643 268 GQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIR 333 (845)
T ss_pred cHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeE
Confidence 99999999999997 346788999999999998887777777777999999999999999985
No 112
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=7.6e-20 Score=155.74 Aligned_cols=267 Identities=19% Similarity=0.196 Sum_probs=173.5
Q ss_pred CCcHHHHhhHHHHhc-C--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 49 EPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~-~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
.+||||...+..+.- | ++.++..|+|+|||++.+.++.-- .+++|+||.+..-+.||...+..|+.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----------kK~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----------KKSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----------cccEEEEecCccCHHHHHHHHHhhcc
Confidence 689999999987653 3 689999999999998866544322 56799999999999999999999977
Q ss_pred CCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcc--------ccCCCCccEEEEeccchhhcCCChHHHHH
Q 019359 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ--------HTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (342)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--------~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (342)
-.+-.++.+.++.... ...++.|+|+|+..+..--.+. .+.-+.++++++||+|.+-+.-|+..+..
T Consensus 371 i~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSI 445 (776)
T ss_pred cCccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHH
Confidence 6666777776654442 3346889999987653211110 11135689999999998755545555555
Q ss_pred HHhhcCCCccEEEEEeecCchHHHHHHH-hcCCCeE--------------EEeccccccc-------------ccccceE
Q 019359 198 IVTQIRPDRQTLYWSATWPREVETLARQ-FLRNPYK--------------VIIGSLELKA-------------NQSINQV 249 (342)
Q Consensus 198 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~-------------~~~~~~~ 249 (342)
+.. ...+++|||+-++.+++... ++.-|.. ..+.-.+... +......
T Consensus 446 v~a-----HcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~l 520 (776)
T KOG1123|consen 446 VQA-----HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRML 520 (776)
T ss_pred HHH-----HhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhe
Confidence 533 33599999985544332221 1111111 1111111111 1111111
Q ss_pred EEEechhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcC-CCCEEE
Q 019359 250 VEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG-RSPIMT 327 (342)
Q Consensus 250 ~~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv 327 (342)
++ .-...+.....-+|+-+. .+.|+|||..+.-.....+-.|. --.++|.+++.+|..+++.|+.+ .+.-++
T Consensus 521 Ly-vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 521 LY-VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred ee-ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEE
Confidence 11 112233333333332221 38899999998877777766663 33567999999999999999854 578899
Q ss_pred EecccccCCCCCCCC
Q 019359 328 ATDVAARGLGRITVC 342 (342)
Q Consensus 328 ~t~~~~~Gidip~v~ 342 (342)
.+.+....||+|..+
T Consensus 595 lSKVgDtSiDLPEAn 609 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEAN 609 (776)
T ss_pred EeeccCccccCCccc
Confidence 999999999999753
No 113
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.1e-18 Score=157.76 Aligned_cols=277 Identities=21% Similarity=0.209 Sum_probs=186.3
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
+|. .+++.|.-..-.+..|+ +..+.||.|||+++.+++...... |..+-+++|+..|+.|-++++..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 565 78888888877766554 779999999999998887776655 6679999999999999999999999
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHH-HHHhcc------ccCCCCccEEEEeccchhhcCC-------
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DMLEAQ------HTNLRRVTYLVLDEADRMLDMG------- 190 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~------~~~~~~~~~iIvDE~h~~~~~~------- 190 (342)
..+|+.+..+.++.+.......+ .+||+++|...+- +++..+ ......+.+.||||++.++=..
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiI 221 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVL 221 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceee
Confidence 99999999998876655444444 4799999976542 222221 1123568899999999722100
Q ss_pred ------------------------------------------------------C-----hHHHHHHHhhc------C--
Q 019359 191 ------------------------------------------------------F-----EPQIRKIVTQI------R-- 203 (342)
Q Consensus 191 ------------------------------------------------------~-----~~~~~~~~~~~------~-- 203 (342)
| ...+..+...+ .
T Consensus 222 Sg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d 301 (764)
T PRK12326 222 AGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRD 301 (764)
T ss_pred eCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 0 00000000000 0
Q ss_pred -----------------------------------------------------------CCccEEEEEeecCchHHHHHH
Q 019359 204 -----------------------------------------------------------PDRQTLYWSATWPREVETLAR 224 (342)
Q Consensus 204 -----------------------------------------------------------~~~~~i~~SaT~~~~~~~~~~ 224 (342)
.-.++.+||+|.....+.+ .
T Consensus 302 ~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef-~ 380 (764)
T PRK12326 302 VHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQL-R 380 (764)
T ss_pred CcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHH-H
Confidence 0026788999976554444 4
Q ss_pred HhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeec
Q 019359 225 QFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIH 303 (342)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~ 303 (342)
..++.+.. .++...+...... ..........+...+++.+.+. ..+.++||.|.+++.++.+++.|.+.|++..+++
T Consensus 381 ~iY~l~Vv-~IPtnkp~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLN 458 (764)
T PRK12326 381 QFYDLGVS-VIPPNKPNIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLN 458 (764)
T ss_pred HHhCCcEE-ECCCCCCceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeec
Confidence 45554433 3332221111111 2233445566777777666554 4589999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 304 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 304 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
+.....+-..+-+.=+ ...|.|||+++++|.||.
T Consensus 459 Ak~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIk 492 (764)
T PRK12326 459 AKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIR 492 (764)
T ss_pred cCchHhHHHHHHhcCC--CCcEEEEecCCCCccCee
Confidence 8765444333322222 235999999999999985
No 114
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.83 E-value=4.1e-18 Score=161.89 Aligned_cols=276 Identities=21% Similarity=0.219 Sum_probs=171.5
Q ss_pred cCCCCCcHHHHhhHHH----HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH-HHH
Q 019359 45 LGFVEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI-QEE 119 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~----~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~-~~~ 119 (342)
-|| +.|+.|.+.... +..++.+++.|+||+|||++|+++++.... +.+++|++||++|+.|+ .+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~---------~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD---------QRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC---------CCcEEEEeCcHHHHHHHHHHH
Confidence 355 899999995443 445688999999999999999999887531 56799999999999999 466
Q ss_pred HHHhcCCCCeEEEEEecCCcchhh-----------------------------------------------H--------
Q 019359 120 ALKFGSRAGIRSTCIYGGAPKGPQ-----------------------------------------------I-------- 144 (342)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~-------- 144 (342)
+..+....++.+..+.|+.+.-.. +
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 766665566666555544321000 0
Q ss_pred ----------------HhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC-----Ch-------HH--
Q 019359 145 ----------------RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----FE-------PQ-- 194 (342)
Q Consensus 145 ----------------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~~-------~~-- 194 (342)
+.-...++|+|++...|...+.... .+...+.+||||||++.+.. .. ..
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~ 470 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQ 470 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHH
Confidence 0001247899999998877654433 25679999999999864210 00 00
Q ss_pred -----------------------------------------HHH-------H--------Hh-----h------------
Q 019359 195 -----------------------------------------IRK-------I--------VT-----Q------------ 201 (342)
Q Consensus 195 -----------------------------------------~~~-------~--------~~-----~------------ 201 (342)
+.. + .. .
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~ 550 (820)
T PRK07246 471 KALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSE 550 (820)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 000 0 00 0
Q ss_pred -------------------cCCCccEEEEEeecC--chHHHHHHHhcCCCe-EEEecccccccccccceEEEE-------
Q 019359 202 -------------------IRPDRQTLYWSATWP--REVETLARQFLRNPY-KVIIGSLELKANQSINQVVEV------- 252 (342)
Q Consensus 202 -------------------~~~~~~~i~~SaT~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------- 252 (342)
++....+|++|||+. +.. .+ ...++.+. .....+.... -+..+..
T Consensus 551 ~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~~~~~~----~~~~~~i~~~~p~~ 624 (820)
T PRK07246 551 KRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKIEKDKK----QDQLVVVDQDMPLV 624 (820)
T ss_pred cceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecCCCChH----HccEEEeCCCCCCC
Confidence 011236788888874 222 22 33333221 1111111000 0111111
Q ss_pred --echhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019359 253 --VTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 329 (342)
Q Consensus 253 --~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 329 (342)
.+.+.....+.+.+.... .+++++|+++|.+..+.+++.|.....++ ...|... .+..++++|++++..||++|
T Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 625 TETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGL 701 (820)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEec
Confidence 112344445666554433 36889999999999999999997654444 4445332 35668999999888999999
Q ss_pred cccccCCCCCC
Q 019359 330 DVAARGLGRIT 340 (342)
Q Consensus 330 ~~~~~Gidip~ 340 (342)
..+.||+|+|+
T Consensus 702 ~sFwEGVD~p~ 712 (820)
T PRK07246 702 GSFWEGVDFVQ 712 (820)
T ss_pred chhhCCCCCCC
Confidence 99999999974
No 115
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.81 E-value=2.1e-18 Score=131.04 Aligned_cols=144 Identities=43% Similarity=0.583 Sum_probs=109.4
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
+++++.+|||+|||.+++..+....... ...+++|++|++.++.|+.+.+..+... +..+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 4689999999999998777766665441 2568999999999999999998887654 56777777776665555
Q ss_pred HhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeec
Q 019359 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (342)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 215 (342)
.......+++++|++.+.+...........++++|+||+|.+....................+++++||||
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55556789999999999887766544456789999999999876654443222334445678999999996
No 116
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.80 E-value=5.7e-19 Score=140.45 Aligned_cols=153 Identities=22% Similarity=0.167 Sum_probs=101.5
Q ss_pred CCcHHHHhhHHHHhc-------CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALK-------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~-------~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~ 121 (342)
.|+++|.+++..+.. .+++++.+|||+|||.+++..+..... ++++++|+..|+.||.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 689999999988773 588999999999999987654444432 59999999999999999997
Q ss_pred HhcCCCCeEEEE-----------EecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccc-----------cCCCCccEEE
Q 019359 122 KFGSRAGIRSTC-----------IYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-----------TNLRRVTYLV 179 (342)
Q Consensus 122 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-----------~~~~~~~~iI 179 (342)
.+.......... ..................+++++|++.+........ .....++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 765432111111 011111111223334568899999999987654311 2234689999
Q ss_pred EeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCc
Q 019359 180 LDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (342)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 217 (342)
+||||+..... .+..+.. .+...+++|||||.+
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99999874432 1444444 457789999999863
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.6e-18 Score=159.01 Aligned_cols=276 Identities=22% Similarity=0.255 Sum_probs=181.4
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|. .+++.|.-.--. -.+.-+..+.||.|||++++++++..... |..+-+++|+..||.|-++++..+.
T Consensus 79 lGm-~~ydVQliGg~~--Lh~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLIGGMT--LHEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHHhhhH--hccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 453 666666654333 34556889999999999998888766555 6679999999999999999999999
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhccc------cCCCCccEEEEeccchhh-cCC------
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRML-DMG------ 190 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~-~~~------ 190 (342)
..+|+.+.++.++.+.......+. ++|+++|..-+ .+++..+. .....+.++||||+|.++ +..
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLII 225 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLII 225 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceee
Confidence 999999999988766554444443 89999998765 22233221 123678999999999832 100
Q ss_pred -------------------------------------Ch---------------HHHHHHH-------------------
Q 019359 191 -------------------------------------FE---------------PQIRKIV------------------- 199 (342)
Q Consensus 191 -------------------------------------~~---------------~~~~~~~------------------- 199 (342)
|. ..+..++
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~ 305 (913)
T PRK13103 226 SGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLG 305 (913)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhH
Confidence 00 0000000
Q ss_pred ------hhc------CC-------------------------------------------------------------Cc
Q 019359 200 ------TQI------RP-------------------------------------------------------------DR 206 (342)
Q Consensus 200 ------~~~------~~-------------------------------------------------------------~~ 206 (342)
..+ .. -.
T Consensus 306 ~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (913)
T PRK13103 306 LLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYN 385 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcc
Confidence 000 00 02
Q ss_pred cEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhc-CCCcEEEEeCCchhH
Q 019359 207 QTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGC 285 (342)
Q Consensus 207 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~ 285 (342)
++-+||+|.......+ ...++.+...+-...+ ......... .......+...+++.+.... .+.++||-+.|++.+
T Consensus 386 kLsGMTGTa~te~~Ef-~~iY~l~Vv~IPTnkP-~~R~D~~d~-vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 386 KLSGMTGTADTEAFEF-RQIYGLDVVVIPPNKP-LARKDFNDL-VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETS 462 (913)
T ss_pred hhccCCCCCHHHHHHH-HHHhCCCEEECCCCCC-cccccCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHH
Confidence 5667777765444433 3444444433222211 111222222 34555667777777776654 488999999999999
Q ss_pred HHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcC-CCCEEEEecccccCCCCC
Q 019359 286 DQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG-RSPIMTATDVAARGLGRI 339 (342)
Q Consensus 286 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~t~~~~~Gidip 339 (342)
+.+++.|++.|++..+++......+-..+- ..| ...|.|||+++++|.||.
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIk 514 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDIL 514 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEe
Confidence 999999999999998888876544433333 234 345999999999999984
No 118
>COG4889 Predicted helicase [General function prediction only]
Probab=99.79 E-value=3.8e-20 Score=166.88 Aligned_cols=302 Identities=17% Similarity=0.180 Sum_probs=170.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcC----CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceE
Q 019359 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (342)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~----~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~v 103 (342)
.|+.+.. .++..++.-..-..|||+|+.++.....+ .+.=+.+.+|+|||++.+-.+ .++. ..++
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eala---------~~~i 209 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EALA---------AARI 209 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHHh---------hhhe
Confidence 3444422 23344444445568999999999876654 456678889999999866543 3322 3569
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH-------------------------hhcCCCcEEEeCh
Q 019359 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR-------------------------DLRRGVEIVIATP 158 (342)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~iiv~T~ 158 (342)
|+|+|+..|..|+.+++.+- ....++...++++........ .-..+--|+++|+
T Consensus 210 L~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTY 288 (1518)
T COG4889 210 LFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTY 288 (1518)
T ss_pred EeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcc
Confidence 99999999999988877653 223444444444432221111 1122456899999
Q ss_pred HHHHHHHhccccCCCCccEEEEeccchhhcCCC----hHHHHHHHhh-cCCCccEEEEEeecCchHHHHHHHh-------
Q 019359 159 GRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF----EPQIRKIVTQ-IRPDRQTLYWSATWPREVETLARQF------- 226 (342)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~----~~~~~~~~~~-~~~~~~~i~~SaT~~~~~~~~~~~~------- 226 (342)
+++...-+.....+..+|+||.||||+...-.+ ...+.++-.. .-+..+.++|||||.-.-+.....-
T Consensus 289 QSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l 368 (1518)
T COG4889 289 QSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL 368 (1518)
T ss_pred cchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee
Confidence 999887666666678899999999998532111 1111111000 0123467889999632211111110
Q ss_pred --------------------------cCCCeEEEecccccccccccceEEEEechhhHHH---HHHHH---H-Hhhc---
Q 019359 227 --------------------------LRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN---RLIKL---L-KEVM--- 270 (342)
Q Consensus 227 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~---l-~~~~--- 270 (342)
+.+........+..................-..+ .++-. + ++..
T Consensus 369 ~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n 448 (1518)
T COG4889 369 SSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDN 448 (1518)
T ss_pred eccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccc
Confidence 0111111111111001111111111111110111 11100 0 0100
Q ss_pred ----------CCCcEEEEeCCchhHHHHHHHHHh-----------C--C--CCcEeecCCCCHHHHHHHHHH---HhcCC
Q 019359 271 ----------DGSRILIFTETKKGCDQVTRQLRM-----------D--G--WPALSIHGDKNQSERDWVLAE---FRSGR 322 (342)
Q Consensus 271 ----------~~~~~lvf~~~~~~~~~l~~~L~~-----------~--~--~~~~~~~~~~~~~~r~~~~~~---f~~~~ 322 (342)
+..+.|-||.++++.+.+++.+.+ . + +.+.++.|.|+..+|.+.+.. |...+
T Consensus 449 ~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~ne 528 (1518)
T COG4889 449 DLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNE 528 (1518)
T ss_pred cccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcch
Confidence 124789999999999998877642 1 2 345678889999999655543 34678
Q ss_pred CCEEEEecccccCCCCCCC
Q 019359 323 SPIMTATDVAARGLGRITV 341 (342)
Q Consensus 323 ~~vlv~t~~~~~Gidip~v 341 (342)
++||-...++++|+|+|.+
T Consensus 529 ckIlSNaRcLSEGVDVPaL 547 (1518)
T COG4889 529 CKILSNARCLSEGVDVPAL 547 (1518)
T ss_pred heeeccchhhhcCCCcccc
Confidence 9999999999999999986
No 119
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.79 E-value=1.8e-17 Score=147.96 Aligned_cols=279 Identities=20% Similarity=0.275 Sum_probs=180.7
Q ss_pred CCcHHHHhhHHHHh----cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~----~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.+++||.+.++++. .|-+.++...||.|||+- .++.+.++...... ..-.||++|...| ..|.+++++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~----~GPfLVi~P~StL-~NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGI----PGPFLVIAPKSTL-DNWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCC----CCCeEEEeeHhhH-HHHHHHHHHhC
Confidence 78999999888764 467899999999999974 55555555442211 2235999998888 68999999997
Q ss_pred CCCCeEEEEEecCCcchhhH-Hhh--cCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhh
Q 019359 125 SRAGIRSTCIYGGAPKGPQI-RDL--RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (342)
+ ++++.+++|+....... +.+ ....+|+|||++...+- ...+.--.+.++||||+|++-+. ...+..++..
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~ 314 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILRE 314 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHH
Confidence 7 56888888886544442 221 23689999999987653 11111123789999999998765 3344455555
Q ss_pred cCCCccEEEEEeecCch----HHHHHHHhcC-------------------------------------------------
Q 019359 202 IRPDRQTLYWSATWPRE----VETLARQFLR------------------------------------------------- 228 (342)
Q Consensus 202 ~~~~~~~i~~SaT~~~~----~~~~~~~~~~------------------------------------------------- 228 (342)
+.. ...+++|+||... +..+...+++
T Consensus 315 f~~-~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKT-DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcc-cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 543 3456788885321 1111111000
Q ss_pred CCeEE--Eeccc---------------------c--------------------------cccccccceEEEEechhhHH
Q 019359 229 NPYKV--IIGSL---------------------E--------------------------LKANQSINQVVEVVTEAEKY 259 (342)
Q Consensus 229 ~~~~~--~~~~~---------------------~--------------------------~~~~~~~~~~~~~~~~~~~~ 259 (342)
....+ .+.-+ . ..+.+.+...-..+....+.
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 00000 00000 0 00000000000011223455
Q ss_pred HHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCC---CCEEEEecccccC
Q 019359 260 NRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR---SPIMTATDVAARG 335 (342)
Q Consensus 260 ~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~t~~~~~G 335 (342)
..|-.++..... |.++|||..-....+-+.++..-.++...-+.|.++-.+|...++.|+... .-.|++|.+.+.|
T Consensus 474 ~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 474 LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 555555555544 889999999988888888888888999999999999999999999998654 3489999999999
Q ss_pred CCCCC
Q 019359 336 LGRIT 340 (342)
Q Consensus 336 idip~ 340 (342)
||+-.
T Consensus 554 INL~a 558 (971)
T KOG0385|consen 554 INLTA 558 (971)
T ss_pred ccccc
Confidence 99753
No 120
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.77 E-value=3.7e-16 Score=151.30 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHhhc--CCCcEEEEeCCchhHHHHHHHHHhCCC--CcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 256 AEKYNRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMDGW--PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 256 ~~~~~~l~~~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
+.....+.+.+.+.. .+++++|+++|.+..+.+++.|+.... ...++.-+++...|..+++.|+.++-.||++|..
T Consensus 734 ~~~~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~s 813 (928)
T PRK08074 734 EEYIEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSS 813 (928)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCc
Confidence 344556666666544 367899999999999999999976432 1233333444446789999999988899999999
Q ss_pred cccCCCCCC
Q 019359 332 AARGLGRIT 340 (342)
Q Consensus 332 ~~~Gidip~ 340 (342)
+.||||+|+
T Consensus 814 FwEGVD~pg 822 (928)
T PRK08074 814 FWEGIDIPG 822 (928)
T ss_pred ccCccccCC
Confidence 999999996
No 121
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=1e-16 Score=143.70 Aligned_cols=280 Identities=20% Similarity=0.217 Sum_probs=179.9
Q ss_pred CCcHHHHhhHHHHhc----CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~----~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|.+||++.++++.+ +...++-..||.|||.- +++.++.+....+. -..+|||||. .+..||..++.+|.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKL----TKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccc----cCceEEEccH-HHHHHHHHHHHHhC
Confidence 689999999987653 46788999999999964 55566666554322 2569999995 56689999999986
Q ss_pred CCCCeEEEEEecCCcchhh-------------HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCC
Q 019359 125 SRAGIRSTCIYGGAPKGPQ-------------IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (342)
+. +++..+++..+.... .+....+..|+++|++.+.-. .. .+.--.++++|+||.|.+-++..
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-~d-~l~~~~W~y~ILDEGH~IrNpns 354 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-GD-DLLGILWDYVILDEGHRIRNPNS 354 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-Cc-ccccccccEEEecCcccccCCcc
Confidence 64 567777766552110 111123467999999866432 11 22223589999999999877642
Q ss_pred hHHHHHHHhhcCCCccEEEEEeecC-chHHHHHHH---hc--------------CC------------------------
Q 019359 192 EPQIRKIVTQIRPDRQTLYWSATWP-REVETLARQ---FL--------------RN------------------------ 229 (342)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~SaT~~-~~~~~~~~~---~~--------------~~------------------------ 229 (342)
.+...+..++ ..+.|++|+||- ..+..++.. .. ..
T Consensus 355 --~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 355 --KISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred --HHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 2222233333 456677888842 111111110 00 00
Q ss_pred -------------------------CeEEEec------------------------------------------ccc-cc
Q 019359 230 -------------------------PYKVIIG------------------------------------------SLE-LK 241 (342)
Q Consensus 230 -------------------------~~~~~~~------------------------------------------~~~-~~ 241 (342)
...+.+. +.. ..
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 0000000 000 00
Q ss_pred c--c-cccceEEEEechhhHHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHH-hCCCCcEeecCCCCHHHHHHHHH
Q 019359 242 A--N-QSINQVVEVVTEAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLR-MDGWPALSIHGDKNQSERDWVLA 316 (342)
Q Consensus 242 ~--~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~ 316 (342)
. . .....+-.......+...+..++..... +.++|+|..++.....+...|. ..++.+.-+.|.++.+.|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 0 0 0000000122234577777777776654 7899999999999999999998 58999999999999999999999
Q ss_pred HHhcCCCC--EEEEecccccCCCCCCC
Q 019359 317 EFRSGRSP--IMTATDVAARGLGRITV 341 (342)
Q Consensus 317 ~f~~~~~~--vlv~t~~~~~Gidip~v 341 (342)
+|++++.- .|++|.+.+-|+|+-..
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgA 618 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGA 618 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccC
Confidence 99987743 78888999999998543
No 122
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.76 E-value=7.5e-16 Score=140.50 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=56.5
Q ss_pred HHHHHHhhc--CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcC----CCCEEEEecccccC
Q 019359 262 LIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG----RSPIMTATDVAARG 335 (342)
Q Consensus 262 l~~~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~----~~~vlv~t~~~~~G 335 (342)
+.+.+.... .+++++|.+.|.+.++.+++.|...-.-...+.|+.+ .+..++++|++. +-.||++|+.+.+|
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 444444332 3778999999999999999999764323445556543 457788999874 68899999999999
Q ss_pred CCC
Q 019359 336 LGR 338 (342)
Q Consensus 336 idi 338 (342)
+|+
T Consensus 536 vDv 538 (636)
T TIGR03117 536 IDL 538 (636)
T ss_pred ccc
Confidence 999
No 123
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.76 E-value=3.6e-16 Score=138.37 Aligned_cols=269 Identities=19% Similarity=0.231 Sum_probs=173.0
Q ss_pred CcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhcCCCC
Q 019359 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAG 128 (342)
Q Consensus 50 l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~-~~~~~~~ 128 (342)
.+.+-.+++..+.+++-+++.|+||+|||+- +.-.+....... ..++-+.-|+|.-+..+++... +.+...|
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQ-ipQyL~eaG~~~------~g~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQ-IPQYLAEAGFAS------SGKIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCcccc-HhHHHHhccccc------CCcEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 3445566788888899999999999999964 332332222211 2348888999988877765543 3333334
Q ss_pred eEEEEE--ecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh-hc-CCChHHHHHHHhhcCC
Q 019359 129 IRSTCI--YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM-LD-MGFEPQIRKIVTQIRP 204 (342)
Q Consensus 129 ~~~~~~--~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~-~~-~~~~~~~~~~~~~~~~ 204 (342)
-.+... +.+.... ...|.+.|-+.|++.+..... ++++++||+||||.= +. .-....++.+++. .+
T Consensus 125 ~~VGY~IRFed~ts~--------~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~ 194 (674)
T KOG0922|consen 125 EEVGYTIRFEDSTSK--------DTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKK-RP 194 (674)
T ss_pred ceeeeEEEecccCCC--------ceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhc-CC
Confidence 333221 2222111 267999999999987665443 688999999999941 11 1011222333222 34
Q ss_pred CccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhh---cCCCcEEEEeCC
Q 019359 205 DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV---MDGSRILIFTET 281 (342)
Q Consensus 205 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~lvf~~~ 281 (342)
+-++|.||||+..+ .+ ..|+...-.+.+.. ....++..+...+..+........+.+. .+.+-+|||...
T Consensus 195 ~LklIimSATlda~--kf-S~yF~~a~i~~i~G----R~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtG 267 (674)
T KOG0922|consen 195 DLKLIIMSATLDAE--KF-SEYFNNAPILTIPG----RTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTG 267 (674)
T ss_pred CceEEEEeeeecHH--HH-HHHhcCCceEeecC----CCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCC
Confidence 56899999998642 34 44555533333322 2223333443344455554444433332 235679999999
Q ss_pred chhHHHHHHHHHhC------CC--CcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 282 KKGCDQVTRQLRMD------GW--PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 282 ~~~~~~l~~~L~~~------~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.++.+..++.|.+. +. -+..+||.++.+++..+...-..|..+|+++|++++..+.||+++
T Consensus 268 qeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 268 QEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred HHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceE
Confidence 99999999999864 11 245789999999988888877789999999999999999999874
No 124
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.75 E-value=6.6e-17 Score=149.17 Aligned_cols=277 Identities=22% Similarity=0.222 Sum_probs=179.5
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|. .+++.|.-..-. -.+.-+..+.||.|||+++.+++.-.... |..|-|++++..|+.+-.+++..+.
T Consensus 73 lG~-r~ydvQlig~l~--L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIGGLV--LNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhhhHh--hcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 565 677777765433 34567899999999999988887544433 5669999999999999999999998
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHH-HHHhccc------cCCCCccEEEEeccchhh-cCC------
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DMLEAQH------TNLRRVTYLVLDEADRML-DMG------ 190 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~~------~~~~~~~~iIvDE~h~~~-~~~------ 190 (342)
..+|+.+.++.++.+.......+. ++|+++|...+- +++..+. .....+.+.||||++.++ +..
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiI 219 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLII 219 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceec
Confidence 899999999887766655544443 789999976432 2222221 124568899999999822 100
Q ss_pred --------------------------C-------------------------------hH-HHHHHHhhc------C---
Q 019359 191 --------------------------F-------------------------------EP-QIRKIVTQI------R--- 203 (342)
Q Consensus 191 --------------------------~-------------------------------~~-~~~~~~~~~------~--- 203 (342)
| .. .+..+.+.+ .
T Consensus 220 Sg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~ 299 (870)
T CHL00122 220 SGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNV 299 (870)
T ss_pred cCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCC
Confidence 0 00 000000000 0
Q ss_pred ----------------------------------------------------------CCccEEEEEeecCchHHHHHHH
Q 019359 204 ----------------------------------------------------------PDRQTLYWSATWPREVETLARQ 225 (342)
Q Consensus 204 ----------------------------------------------------------~~~~~i~~SaT~~~~~~~~~~~ 225 (342)
.-.++.+||+|....... ...
T Consensus 300 dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~E-f~~ 378 (870)
T CHL00122 300 HYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELE-FEK 378 (870)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHH-HHH
Confidence 002678888887654333 344
Q ss_pred hcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHh-hcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecC
Q 019359 226 FLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHG 304 (342)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~ 304 (342)
.++..... ++...+......... .......+...+++.+.+ +..+.++||-|.|++.++.+++.|.+.|++..++++
T Consensus 379 iY~l~vv~-IPtnkp~~R~d~~d~-v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNA 456 (870)
T CHL00122 379 IYNLEVVC-IPTHRPMLRKDLPDL-IYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNA 456 (870)
T ss_pred HhCCCEEE-CCCCCCccceeCCCe-EEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeC
Confidence 55554443 322221112222222 234455555556555444 445899999999999999999999999999999998
Q ss_pred CC-CHHHHHHHHHHHhcCC-CCEEEEecccccCCCCC
Q 019359 305 DK-NQSERDWVLAEFRSGR-SPIMTATDVAARGLGRI 339 (342)
Q Consensus 305 ~~-~~~~r~~~~~~f~~~~-~~vlv~t~~~~~Gidip 339 (342)
.. ..++-..++.. .|. ..|.|||+++++|.||.
T Consensus 457 k~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 457 KPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 63 22233344433 333 45999999999999984
No 125
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.73 E-value=1e-15 Score=142.46 Aligned_cols=278 Identities=18% Similarity=0.197 Sum_probs=183.3
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-hcCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRA 127 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~-~~~~~ 127 (342)
..+..+.++++.+.+.+.+++.|.||+|||.-.---+++...... ...++++--|++--|..++++..+ -+...
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 457788889999999999999999999999865555666554443 266799999999888888776654 22223
Q ss_pred CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh-hcCCChHHHHHHHhhcCCCc
Q 019359 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM-LDMGFEPQIRKIVTQIRPDR 206 (342)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~-~~~~~~~~~~~~~~~~~~~~ 206 (342)
|-.+..-....+. ......+.+||.+.|++.+..+ ..+..+..+|+||+|.= .+.++.-.+.+.+-...++-
T Consensus 248 g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeecc------cCCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 3222111111111 1112679999999999998873 34678999999999952 23334433333333445789
Q ss_pred cEEEEEeecCchHHHHHHHhcCCCeEEEecccccccc---------------cccceE------------EEEec---hh
Q 019359 207 QTLYWSATWPREVETLARQFLRNPYKVIIGSLELKAN---------------QSINQV------------VEVVT---EA 256 (342)
Q Consensus 207 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~------------~~~~~---~~ 256 (342)
++|+||||+.. .....|++......+.....+.. ...... ..... +.
T Consensus 321 kvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 397 (924)
T KOG0920|consen 321 KVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY 397 (924)
T ss_pred eEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH
Confidence 99999999874 33344444433333321100000 000000 00001 11
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC-------CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019359 257 EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD-------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 329 (342)
Q Consensus 257 ~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 329 (342)
+-+..+...+.+....+.+|||.+...+...+.+.|... .+-+..+|+.++..+++.+.+..-.|..+||++|
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaT 477 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILAT 477 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhh
Confidence 223334444444333678999999999999999999742 2456789999999999999999989999999999
Q ss_pred cccccCCCCCCC
Q 019359 330 DVAARGLGRITV 341 (342)
Q Consensus 330 ~~~~~Gidip~v 341 (342)
++++..|.||||
T Consensus 478 NIAETSITIdDV 489 (924)
T KOG0920|consen 478 NIAETSITIDDV 489 (924)
T ss_pred hhHhhcccccCe
Confidence 999999999997
No 126
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=5.4e-16 Score=143.08 Aligned_cols=277 Identities=22% Similarity=0.255 Sum_probs=179.0
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|. .+++.|.-.--. -.+.-+..+.||-|||+++.+++.-.... |..|-|++++..||..-.+++..+.
T Consensus 82 lG~-r~ydVQliGgl~--Lh~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIGGMV--LHEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHhhhh--hcCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 454 666666654433 35567889999999999998887665554 5669999999999999999999998
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-----HHHHhcc--ccCCCCccEEEEeccchhh-cCC------
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-----IDMLEAQ--HTNLRRVTYLVLDEADRML-DMG------ 190 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-----~~~~~~~--~~~~~~~~~iIvDE~h~~~-~~~------ 190 (342)
..+|+.+.++.++.+.......+ .+||+++|...+ .+.+... ......+.+.||||++.++ +..
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLII 228 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLII 228 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhc--CCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccc
Confidence 89999999987766554443333 589999998765 3332221 1234678899999999832 100
Q ss_pred ----------Ch------HHH------------------------------------------------HHHHhhc----
Q 019359 191 ----------FE------PQI------------------------------------------------RKIVTQI---- 202 (342)
Q Consensus 191 ----------~~------~~~------------------------------------------------~~~~~~~---- 202 (342)
|. ..+ ..+.+.+
T Consensus 229 Sg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~ 308 (939)
T PRK12902 229 SGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKE 308 (939)
T ss_pred cCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHH
Confidence 00 000 0000000
Q ss_pred --C-------------------------------------------------------------CCccEEEEEeecCchH
Q 019359 203 --R-------------------------------------------------------------PDRQTLYWSATWPREV 219 (342)
Q Consensus 203 --~-------------------------------------------------------------~~~~~i~~SaT~~~~~ 219 (342)
. .-.++.+||+|.....
T Consensus 309 lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~ 388 (939)
T PRK12902 309 LFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEE 388 (939)
T ss_pred HHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHH
Confidence 0 0026677888865444
Q ss_pred HHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhCCCC
Q 019359 220 ETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWP 298 (342)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~ 298 (342)
..+ ...++.+...+-...+ .........+ ......+...+++.+.+. ..+.++||-|.|++.++.+++.|.+.|++
T Consensus 389 ~Ef-~~iY~l~Vv~IPTnkP-~~R~d~~d~v-y~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 389 VEF-EKTYKLEVTVIPTNRP-RRRQDWPDQV-YKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHH-HHHhCCcEEEcCCCCC-eeeecCCCeE-EcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 333 3344444433222211 1112222222 344556666777666554 45899999999999999999999999999
Q ss_pred cEeecCC-CCHHHHHHHHHHHhcCC-CCEEEEecccccCCCCC
Q 019359 299 ALSIHGD-KNQSERDWVLAEFRSGR-SPIMTATDVAARGLGRI 339 (342)
Q Consensus 299 ~~~~~~~-~~~~~r~~~~~~f~~~~-~~vlv~t~~~~~Gidip 339 (342)
..+++.. ...+.-..++.. .|. ..|-|||+++++|.||.
T Consensus 466 h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred hheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 9999986 332333344433 343 45999999999999974
No 127
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2e-16 Score=147.38 Aligned_cols=86 Identities=22% Similarity=0.317 Sum_probs=77.3
Q ss_pred EechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 252 VVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 252 ~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
......+...+.+.+... ..+.++||||+|++.++.+++.|++.|+++..+|+ .+.+|+..+-.|..+...|+|||+
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 456667888888888764 34889999999999999999999999999999997 577899999999999999999999
Q ss_pred ccccCCCCC
Q 019359 331 VAARGLGRI 339 (342)
Q Consensus 331 ~~~~Gidip 339 (342)
++++|+||+
T Consensus 655 MAGRGtDIk 663 (1025)
T PRK12900 655 MAGRGTDIK 663 (1025)
T ss_pred CcCCCCCcC
Confidence 999999998
No 128
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.71 E-value=3e-16 Score=140.67 Aligned_cols=280 Identities=19% Similarity=0.263 Sum_probs=181.1
Q ss_pred CCcHHHHhhHHHHh----cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~----~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
+|.+||.-.+.++. .+-+.++...+|.|||. -+++.++.+.+... +|++ |||||+..| ..|.+++.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTi-QvIaFlayLkq~g~----~gpH-LVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTI-QVIAFLAYLKQIGN----PGPH-LVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchh-HHHHHHHHHHHcCC----CCCc-EEEecchhH-HHHHHHHHHhC
Confidence 58999999888753 34578999999999995 46666666665543 2444 889999988 68999999999
Q ss_pred CCCCeEEEEEecCCcchhhHHhhc----CCCcEEEeChHHHHHHHh-ccccCCCCccEEEEeccchhhcCCChHHHHHHH
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLR----RGVEIVIATPGRLIDMLE-AQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 199 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~~~-~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~ 199 (342)
+. +.+...+|......+.+... .+++|+++|++-.-.--. +..+.-.+++++|+||+|.+-+.. ...+..++
T Consensus 472 Ps--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM 548 (941)
T KOG0389|consen 472 PS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM 548 (941)
T ss_pred Cc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc
Confidence 85 57777888876666654332 258999999965431100 011123568999999999886653 44555554
Q ss_pred hhcCCCccEEEEEeecCch-HHHHHHH---hcC-----------------------------------------------
Q 019359 200 TQIRPDRQTLYWSATWPRE-VETLARQ---FLR----------------------------------------------- 228 (342)
Q Consensus 200 ~~~~~~~~~i~~SaT~~~~-~~~~~~~---~~~----------------------------------------------- 228 (342)
..- ....+++|+||... +..++.. .+.
T Consensus 549 ~I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 549 SIN--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred ccc--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 332 56778899995321 1111110 000
Q ss_pred ----------CCeEEEec----------------------ccccccc----c--------------ccceEEE-------
Q 019359 229 ----------NPYKVIIG----------------------SLELKAN----Q--------------SINQVVE------- 251 (342)
Q Consensus 229 ----------~~~~~~~~----------------------~~~~~~~----~--------------~~~~~~~------- 251 (342)
.|....+. ......+ . -..+.++
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 00000000 0000000 0 0000000
Q ss_pred -------------------------------------------------EechhhHHHHHHHHHHhhcC-CCcEEEEeCC
Q 019359 252 -------------------------------------------------VVTEAEKYNRLIKLLKEVMD-GSRILIFTET 281 (342)
Q Consensus 252 -------------------------------------------------~~~~~~~~~~l~~~l~~~~~-~~~~lvf~~~ 281 (342)
..-...|...|..++.+... |.|+|||...
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 00012344445555554433 6899999999
Q ss_pred chhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCC--CCEEEEecccccCCCCCC
Q 019359 282 KKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR--SPIMTATDVAARGLGRIT 340 (342)
Q Consensus 282 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~t~~~~~Gidip~ 340 (342)
....+-+.-.|.-.++...-+.|.+.-..|+.++..|..++ .-.|++|.+.+.|||+-.
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~ 847 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTC 847 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccc
Confidence 99888888899999999999999999999999999998766 348899999999999753
No 129
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.71 E-value=2.6e-15 Score=128.16 Aligned_cols=274 Identities=14% Similarity=0.162 Sum_probs=173.6
Q ss_pred CCcHHHHhhHH-HHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCC
Q 019359 49 EPTPIQAQGWP-MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (342)
Q Consensus 49 ~l~~~Q~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~ 127 (342)
.|-|+|.+.+. .+.+|.++++...||.|||+-++..+..+..+++ .||+||.. +...|.+.+++|.+..
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp---------lliVcPAs-vrftWa~al~r~lps~ 267 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP---------LLIVCPAS-VRFTWAKALNRFLPSI 267 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc---------EEEEecHH-HhHHHHHHHHHhcccc
Confidence 67899999876 4667889999999999999876654444433333 79999965 4478999999987654
Q ss_pred CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCcc
Q 019359 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ 207 (342)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 207 (342)
.- +..+.++...... +-....|.|.+++.+..+-.. ..-.++.++|+||+|.+-+.. ....+.+...+....+
T Consensus 268 ~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 268 HP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKH 340 (689)
T ss_pred cc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhh
Confidence 32 4444444333222 223467999999887654322 122458999999999875543 3446666666667789
Q ss_pred EEEEEeecCch--H-----------------HHHHHHhcCC---CeEEEeccc-----------------------cccc
Q 019359 208 TLYWSATWPRE--V-----------------ETLARQFLRN---PYKVIIGSL-----------------------ELKA 242 (342)
Q Consensus 208 ~i~~SaT~~~~--~-----------------~~~~~~~~~~---~~~~~~~~~-----------------------~~~~ 242 (342)
+|++|+||.-+ . -.+...|+.- +..+.+... -...
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999997321 1 1111111110 001111000 0000
Q ss_pred ccccceEEEEec-------------------------------------hhhHHHHHHHHHHhhc-----CCCcEEEEeC
Q 019359 243 NQSINQVVEVVT-------------------------------------EAEKYNRLIKLLKEVM-----DGSRILIFTE 280 (342)
Q Consensus 243 ~~~~~~~~~~~~-------------------------------------~~~~~~~l~~~l~~~~-----~~~~~lvf~~ 280 (342)
++.....+.... ...|...+.+++..+. .+.|.+|||.
T Consensus 421 PpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaH 500 (689)
T KOG1000|consen 421 PPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAH 500 (689)
T ss_pred CccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEeh
Confidence 111111111000 0123334445555421 2679999999
Q ss_pred CchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCC-CC-EEEEecccccCCCCC
Q 019359 281 TKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR-SP-IMTATDVAARGLGRI 339 (342)
Q Consensus 281 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~t~~~~~Gidip 339 (342)
.....+.|...+.+.++...-+.|.++..+|....+.|+.++ .. -+++..+++.|+++-
T Consensus 501 H~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~t 561 (689)
T KOG1000|consen 501 HQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLT 561 (689)
T ss_pred hHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeee
Confidence 999999999999999999999999999999999999998765 33 344457788888864
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=7.6e-16 Score=141.62 Aligned_cols=276 Identities=21% Similarity=0.246 Sum_probs=178.3
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|. .+++.|.-..-.+.. .-+..+.||-|||+++.+++.-.... |..|-|++.+..|+..-.+++..+-
T Consensus 75 lG~-r~ydVQliGglvLh~--G~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDL--GSVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHHHhc--CCeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHH
Confidence 455 777777766544433 35789999999999988877554444 5568899999999999999999988
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhccc------cCCCCccEEEEeccchhh-cCC------
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRML-DMG------ 190 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~-~~~------ 190 (342)
..+|+.+.++..+.+.......+ .+||+++|...+ .+++..+- .....+.+.||||++.++ +..
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLII 221 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLII 221 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccc
Confidence 88999999887765554444444 489999997665 23333321 124568899999999722 100
Q ss_pred ------ChHH----------------------------------------------------HHHHHhhc----------
Q 019359 191 ------FEPQ----------------------------------------------------IRKIVTQI---------- 202 (342)
Q Consensus 191 ------~~~~----------------------------------------------------~~~~~~~~---------- 202 (342)
.... +..+.+.+
T Consensus 222 Sg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~ 301 (925)
T PRK12903 222 SGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDV 301 (925)
T ss_pred cCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 0000 00000000
Q ss_pred ---------------------------------------------------------CCCccEEEEEeecCchHHHHHHH
Q 019359 203 ---------------------------------------------------------RPDRQTLYWSATWPREVETLARQ 225 (342)
Q Consensus 203 ---------------------------------------------------------~~~~~~i~~SaT~~~~~~~~~~~ 225 (342)
..-.++-+||+|.......+. .
T Consensus 302 dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~-~ 380 (925)
T PRK12903 302 EYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI-D 380 (925)
T ss_pred ceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH-H
Confidence 001266788888655444444 3
Q ss_pred hcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecC
Q 019359 226 FLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHG 304 (342)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~ 304 (342)
.++.....+-...+..... ... ........+...+++.+.+. ..+.++||.|.|++.++.+++.|.+.|++..++++
T Consensus 381 iY~l~Vv~IPTnkP~~R~D-~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 381 IYNMRVNVVPTNKPVIRKD-EPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred HhCCCEEECCCCCCeeeee-CCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 4444433222211111111 111 22344556666777766654 45889999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHhcC-CCCEEEEecccccCCCCC
Q 019359 305 DKNQSERDWVLAEFRSG-RSPIMTATDVAARGLGRI 339 (342)
Q Consensus 305 ~~~~~~r~~~~~~f~~~-~~~vlv~t~~~~~Gidip 339 (342)
.....+-. ++. ..| ...|.|||+++++|.||.
T Consensus 459 k~~e~EA~-IIa--~AG~~GaVTIATNMAGRGTDI~ 491 (925)
T PRK12903 459 KQNAREAE-IIA--KAGQKGAITIATNMAGRGTDIK 491 (925)
T ss_pred cchhhHHH-HHH--hCCCCCeEEEecccccCCcCcc
Confidence 75543333 332 345 345999999999999985
No 131
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.71 E-value=2.2e-15 Score=139.61 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=80.6
Q ss_pred echhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 253 VTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 253 ~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
.....+...+.+.+.... .+.+++|||++++.++.+++.|.+.|+++..+|++++..+|..+++.|+.|++.|+|||+.
T Consensus 422 ~~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 422 RPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred eeccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 344556667777777654 3788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCC
Q 019359 332 AARGLGRITVC 342 (342)
Q Consensus 332 ~~~Gidip~v~ 342 (342)
+++|+|+|+++
T Consensus 502 L~rGfDiP~v~ 512 (655)
T TIGR00631 502 LREGLDLPEVS 512 (655)
T ss_pred hcCCeeeCCCc
Confidence 99999999975
No 132
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.71 E-value=1.9e-16 Score=147.90 Aligned_cols=317 Identities=18% Similarity=0.232 Sum_probs=200.4
Q ss_pred HHHHHhhhhcceee---eccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHh----cCCCEEEEcCCCCc
Q 019359 4 TEVKMYRARREITV---EGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMAL----KGRDLIGIAETGSG 76 (342)
Q Consensus 4 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~----~~~~~l~~~~tG~G 76 (342)
..++.+.+|..-.. .+.++..+...|..+..++..... .+||.||.+.+++++ +++++++...+|.|
T Consensus 328 ~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLg 401 (1373)
T KOG0384|consen 328 EEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLG 401 (1373)
T ss_pred HHHHHHhhhhccccCCCCccccCccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCC
Confidence 34555655543222 344556667778887766643333 589999999887654 67999999999999
Q ss_pred hhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhc----C---
Q 019359 77 KTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR----R--- 149 (342)
Q Consensus 77 KT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--- 149 (342)
||.- .+..+..+....+.. |+ .||++|...+. .|.+++..|+ ++++++.+|+......++.+. .
T Consensus 402 ktvq-ti~fl~~l~~~~~~~---gp-flvvvplst~~-~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~ 472 (1373)
T KOG0384|consen 402 KTVQ-TITFLSYLFHSLQIH---GP-FLVVVPLSTIT-AWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTK 472 (1373)
T ss_pred cchH-HHHHHHHHHHhhhcc---CC-eEEEeehhhhH-HHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCcc
Confidence 9964 445555555443322 33 58889987774 5777787774 788999999887777665442 1
Q ss_pred --CCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCc-hHHHHHHHh
Q 019359 150 --GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR-EVETLARQF 226 (342)
Q Consensus 150 --~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~ 226 (342)
.++++++|++.++.--.. +.--.+.+++|||||++-+.. ..+...+..+.. ...+++|+||.. .++.+....
T Consensus 473 ~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~~--~~l~~~l~~f~~-~~rllitgTPlQNsikEL~sLl 547 (1373)
T KOG0384|consen 473 KLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKNDE--SKLYESLNQFKM-NHRLLITGTPLQNSLKELWSLL 547 (1373)
T ss_pred ccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCchH--HHHHHHHHHhcc-cceeeecCCCccccHHHHHHHh
Confidence 378999999988653211 111247899999999986542 233333455543 455778888643 233322111
Q ss_pred -cCCCeEEEec--------------------------------ccccccccccceEEE----------------------
Q 019359 227 -LRNPYKVIIG--------------------------------SLELKANQSINQVVE---------------------- 251 (342)
Q Consensus 227 -~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~---------------------- 251 (342)
+..|..+... +.+-..+.....++.
T Consensus 548 ~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~L 627 (1373)
T KOG0384|consen 548 HFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSAL 627 (1373)
T ss_pred cccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHH
Confidence 1111111000 000000011111111
Q ss_pred ----------------------------Eechhh---HH------HHHHHHHH-------------hhc-CCCcEEEEeC
Q 019359 252 ----------------------------VVTEAE---KY------NRLIKLLK-------------EVM-DGSRILIFTE 280 (342)
Q Consensus 252 ----------------------------~~~~~~---~~------~~l~~~l~-------------~~~-~~~~~lvf~~ 280 (342)
...++. .. ..+..+|. +.. .|+++|||..
T Consensus 628 tKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQ 707 (1373)
T KOG0384|consen 628 TKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQ 707 (1373)
T ss_pred hccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHH
Confidence 000100 00 12222221 122 2689999999
Q ss_pred CchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhc---CCCCEEEEecccccCCCCCC
Q 019359 281 TKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS---GRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 281 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vlv~t~~~~~Gidip~ 340 (342)
-....+-++++|.-.+++..-+.|.+..+.|..++..|+. .+...|+||.+.+-|||+-.
T Consensus 708 MVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLat 770 (1373)
T KOG0384|consen 708 MVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLAT 770 (1373)
T ss_pred HHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccc
Confidence 9999999999999999999999999999999999999985 35669999999999999853
No 133
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=1.4e-14 Score=127.73 Aligned_cols=273 Identities=18% Similarity=0.223 Sum_probs=179.9
Q ss_pred CCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-Hhc
Q 019359 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFG 124 (342)
Q Consensus 46 ~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~-~~~ 124 (342)
.....+++-.+++..+..++-+++.|.||||||.- +. +.+.... +.. .+.++-+--|++.-+..++.... .++
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ-iP---QyL~EaG-ytk-~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ-IP---QYLYEAG-YTK-GGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc-cc---HHHHhcc-ccc-CCceEeecCcchHHHHHHHHHHHHHhC
Confidence 33345667777888888899999999999999974 22 2222221 111 25568888999988887765443 333
Q ss_pred CCCCeEEE---EEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch-hhcCCCh-HHHHHHH
Q 019359 125 SRAGIRST---CIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR-MLDMGFE-PQIRKIV 199 (342)
Q Consensus 125 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~-~~~~~~~-~~~~~~~ 199 (342)
..+|-.+. .+.+..+. ..-+=+.|-+.|++-+... .++.++++|||||||. .+.-+.. ..+.. +
T Consensus 336 vkLG~eVGYsIRFEdcTSe---------kTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKD-I 404 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCTSE---------KTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKD-I 404 (902)
T ss_pred cccccccceEEEeccccCc---------ceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHH-H
Confidence 33332221 12222221 1346678999998876553 3578899999999994 1221111 12222 3
Q ss_pred hhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhc---CCCcEE
Q 019359 200 TQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM---DGSRIL 276 (342)
Q Consensus 200 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~l 276 (342)
..+.++-++++.|||+..+ .+ ..++.+.-.+.++. ....++.++...++.+.++..+.-+.+.. +.+-+|
T Consensus 405 ar~RpdLKllIsSAT~DAe--kF-S~fFDdapIF~iPG----RRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDIL 477 (902)
T KOG0923|consen 405 ARFRPDLKLLISSATMDAE--KF-SAFFDDAPIFRIPG----RRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDIL 477 (902)
T ss_pred HhhCCcceEEeeccccCHH--HH-HHhccCCcEEeccC----cccceeeecccCCchhHHHHHHhhheeeEeccCCccEE
Confidence 3445788999999998652 33 44566555444432 23345556666677777777666665532 357799
Q ss_pred EEeCCchhHHHHHHHHHhC----C-----CCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 277 IFTETKKGCDQVTRQLRMD----G-----WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 277 vf~~~~~~~~~l~~~L~~~----~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
||...-+..+...+.|++. | +-+..+|+.+|...+..+++.--+|-.+|++||++++..+.|++|+
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~ 552 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIK 552 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeE
Confidence 9999888888777777642 2 3356788999998888888777788899999999999999999874
No 134
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.65 E-value=4.6e-14 Score=129.43 Aligned_cols=160 Identities=21% Similarity=0.195 Sum_probs=106.0
Q ss_pred CCcHHHHhhHHHHhc---C-------CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALK---G-------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~---~-------~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~ 118 (342)
.++|||++.+..+.+ | ..+++.-.+|+|||+..+..+...+...+.... --.+.||++| ..|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~-~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP-LINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc-cccccEEEcc-HHHHHHHHH
Confidence 689999999987653 1 357788899999998766555556655442111 1267999999 577799999
Q ss_pred HHHHhcCCCCeEEEEEecCCcc-hhhHH------hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCC
Q 019359 119 EALKFGSRAGIRSTCIYGGAPK-GPQIR------DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (342)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (342)
+|.+|.....+....+.+.... ..... .-.-..-|.+.+++.+.+..... ....++++|+||.|+.-+.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~i--l~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKI--LLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHH--hcCCCCeEEECCCCCccch--
Confidence 9999866556666667776554 00000 00113568889999987655542 2356899999999987553
Q ss_pred hHHHHHHHhhcCCCccEEEEEeec
Q 019359 192 EPQIRKIVTQIRPDRQTLYWSATW 215 (342)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~SaT~ 215 (342)
...+...+..+. ..+.|++|+||
T Consensus 392 ~s~~~kaL~~l~-t~rRVLLSGTp 414 (776)
T KOG0390|consen 392 DSLTLKALSSLK-TPRRVLLTGTP 414 (776)
T ss_pred hhHHHHHHHhcC-CCceEEeeCCc
Confidence 223333334443 55677788883
No 135
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.64 E-value=2e-14 Score=134.50 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=106.0
Q ss_pred CCcHHHHhhHHHHh--c--CCCEEEEcCCCCchhhHhHHHH-HHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 49 EPTPIQAQGWPMAL--K--GRDLIGIAETGSGKTLSYLLPA-FVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~--~--~~~~l~~~~tG~GKT~~~~~~~-~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+|.||++.+.++. + +-+.+++..||.|||+-.+..+ ..+........+-+..-.||+|| ..|+.-|..++++|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHh
Confidence 57999999987643 3 3578999999999998643332 22333211111112333799999 57889999999999
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcC
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (342)
.+. +++....|........+.-.+..+|+|++|+.+.+-+.. ..-..+.+.|+||-|-+-+. ...+.+..+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 887 566666666666666555556689999999988643221 01134789999999987553 334444444443
Q ss_pred CCccEEEEEeec
Q 019359 204 PDRQTLYWSATW 215 (342)
Q Consensus 204 ~~~~~i~~SaT~ 215 (342)
..+.+.+|+||
T Consensus 1128 -a~hRLILSGTP 1138 (1549)
T KOG0392|consen 1128 -ANHRLILSGTP 1138 (1549)
T ss_pred -hcceEEeeCCC
Confidence 45667799995
No 136
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.63 E-value=2.3e-14 Score=131.40 Aligned_cols=160 Identities=19% Similarity=0.237 Sum_probs=112.3
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-hcCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRA 127 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~-~~~~~ 127 (342)
.|..+|.+.+...-.+.++++.|||.+|||++....+-..+.... ...+++++|+++|+.|....+.. |-...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD------~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD------SDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcC------CCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 578899999999999999999999999999975555555444432 67899999999999999877764 31111
Q ss_pred CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc---cccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCC
Q 019359 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA---QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (342)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~---~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (342)
-.....+.|.-...-... .-.|.|+|+-|+.+-..+.. ......+++++|+||+|.+.+..-+-.+..+....
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 112222222222111111 12489999999999887766 33456789999999999987765555555554444
Q ss_pred CccEEEEEeecCch
Q 019359 205 DRQTLYWSATWPRE 218 (342)
Q Consensus 205 ~~~~i~~SaT~~~~ 218 (342)
.+..+++|||..+.
T Consensus 661 ~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 661 PCPFLVLSATIGNP 674 (1330)
T ss_pred CCCeeEEecccCCH
Confidence 57899999997554
No 137
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=7.1e-14 Score=123.84 Aligned_cols=271 Identities=16% Similarity=0.186 Sum_probs=167.5
Q ss_pred CCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhcC
Q 019359 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGS 125 (342)
Q Consensus 47 ~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~-~~~~ 125 (342)
+.....++.+++..+..++-+++.+.||+|||.- +.+.+....=. .+.-+-+--|++.-+..+++... +++.
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY~---~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGYA---DNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhcccc---cCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 3345667778888888889999999999999975 22333332211 13355666799988888776554 3433
Q ss_pred CCCeEEE---EEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh-hcCCC-hHHHHHHHh
Q 019359 126 RAGIRST---CIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM-LDMGF-EPQIRKIVT 200 (342)
Q Consensus 126 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~-~~~~~-~~~~~~~~~ 200 (342)
.+|-.+. .+.+-+.. ...|=+.|-+-|++-..... .+.+++.||+||||.= ++.+. .-.++..+.
T Consensus 427 ~lG~~VGYsIRFEdvT~~---------~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~la 496 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTSE---------DTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLA 496 (1042)
T ss_pred ccccccceEEEeeecCCC---------ceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHH
Confidence 3332221 11111111 24577888888877533322 3578999999999952 22111 112222222
Q ss_pred hcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhc---CCCcEEE
Q 019359 201 QIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM---DGSRILI 277 (342)
Q Consensus 201 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~lv 277 (342)
-..+.++|.+|||+... .+ ..++++.-.+.+.. ....++..+...+.++.+...+...-... ..+-+||
T Consensus 497 -rRrdlKliVtSATm~a~--kf-~nfFgn~p~f~IpG----RTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilI 568 (1042)
T KOG0924|consen 497 -RRRDLKLIVTSATMDAQ--KF-SNFFGNCPQFTIPG----RTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILI 568 (1042)
T ss_pred -hhccceEEEeeccccHH--HH-HHHhCCCceeeecC----CccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEE
Confidence 23477899999998653 44 44555433333322 12233444444444555544443332221 2467999
Q ss_pred EeCCchhHHHHHHHHHh----------CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 278 FTETKKGCDQVTRQLRM----------DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 278 f~~~~~~~~~l~~~L~~----------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|....+..+.....+++ .+..+..+++.+++.-+..+++.-..|-.++||||++++..+.+|+++
T Consensus 569 fmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~ 643 (1042)
T KOG0924|consen 569 FMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIR 643 (1042)
T ss_pred ecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceE
Confidence 99888877766655543 156788899999998888888777788899999999999999999873
No 138
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.61 E-value=4.7e-13 Score=126.02 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHh----cCCCCEEEEec
Q 019359 256 AEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFR----SGRSPIMTATD 330 (342)
Q Consensus 256 ~~~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vlv~t~ 330 (342)
......+.+.+.+... +++++|+++|.+..+.+++.|....-......|.. .+..+++.|+ .++..||++|.
T Consensus 517 ~~~~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~ 593 (697)
T PRK11747 517 EAHTAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEec
Confidence 3445566666655433 55699999999999999999975321233445532 4677887776 46778999999
Q ss_pred ccccCCCCCC
Q 019359 331 VAARGLGRIT 340 (342)
Q Consensus 331 ~~~~Gidip~ 340 (342)
.+.+|||+|+
T Consensus 594 sf~EGVD~pG 603 (697)
T PRK11747 594 SFAEGLDLPG 603 (697)
T ss_pred cccccccCCC
Confidence 9999999986
No 139
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.61 E-value=1.8e-13 Score=129.51 Aligned_cols=73 Identities=36% Similarity=0.458 Sum_probs=58.6
Q ss_pred HHcCCCCCcHHHHhhHHHHh----cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 019359 43 AKLGFVEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (342)
Q Consensus 43 ~~~~~~~l~~~Q~~~~~~~~----~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~ 118 (342)
..+..-++|+.|.+.+..+. .++..++.||||+|||++++.+++...... +.+++|.++++.+..|..+
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-------~~~viist~t~~lq~q~~~ 81 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE-------GKKVIISTRTKALQEQLLE 81 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc-------CCcEEEECCCHHHHHHHHH
Confidence 34445599999999876543 356699999999999999999999887664 4679999999999999877
Q ss_pred HHHH
Q 019359 119 EALK 122 (342)
Q Consensus 119 ~~~~ 122 (342)
+...
T Consensus 82 ~~~~ 85 (654)
T COG1199 82 EDLP 85 (654)
T ss_pred hhcc
Confidence 6544
No 140
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=4.7e-13 Score=126.93 Aligned_cols=74 Identities=23% Similarity=0.198 Sum_probs=61.6
Q ss_pred cCCCCCcHHHHhhHHHH----hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 45 LGFVEPTPIQAQGWPMA----LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~----~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
+.|..++|.|.+.+..+ ..+++.++.+|||+|||++.+.++++.....+ ...++++.+.|..-..|..+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHH
Confidence 56777799999987654 45789999999999999999999888766533 1468999999999999999999
Q ss_pred HHh
Q 019359 121 LKF 123 (342)
Q Consensus 121 ~~~ 123 (342)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 884
No 141
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.58 E-value=3.3e-13 Score=123.72 Aligned_cols=253 Identities=17% Similarity=0.160 Sum_probs=161.4
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
.-.++.+|+|+|||.. ++..+...... .+.++|+++.++.|+.++...++...-. ++.. .... .....
T Consensus 50 ~V~vVRSpMGTGKTta-Li~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~--Y~d~-~~~~i- 117 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTA-LIRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVN--YLDS-DDYII- 117 (824)
T ss_pred CeEEEECCCCCCcHHH-HHHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-ccee--eecc-ccccc-
Confidence 3467889999999975 44444443222 2678999999999999999999874221 2221 1111 11101
Q ss_pred HhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHH-------HHHHhhcCCCccEEEEEeecCc
Q 019359 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQI-------RKIVTQIRPDRQTLYWSATWPR 217 (342)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~-------~~~~~~~~~~~~~i~~SaT~~~ 217 (342)
. .+.++-+++..++|.++... .+..+|+||+||+-..++.-+.+.+ ..+...+....++|++-|++..
T Consensus 118 ~--~~~~~rLivqIdSL~R~~~~---~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~ 192 (824)
T PF02399_consen 118 D--GRPYDRLIVQIDSLHRLDGS---LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLND 192 (824)
T ss_pred c--ccccCeEEEEehhhhhcccc---cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCH
Confidence 0 11357788888889876432 3456899999999987654433222 2344555678899999999999
Q ss_pred hHHHHHHHhcCCCeEEEecccccccccccceEE-----------------------------------EEechhhHHHHH
Q 019359 218 EVETLARQFLRNPYKVIIGSLELKANQSINQVV-----------------------------------EVVTEAEKYNRL 262 (342)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~l 262 (342)
..-.++..+.+......+.............-. ......+.....
T Consensus 193 ~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 193 QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 988888877665433333211111000000000 000001122334
Q ss_pred HHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 263 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
..++.....|+++-||++|...++.+++.....+.++.++++..+.. ++ +.| ++++|++-|++++.|+++.+
T Consensus 273 ~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~W--~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 273 SELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ESW--KKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-ccc--cceeEEEEeceEEEEeccch
Confidence 44445555689999999999999999999998888899998876654 22 233 57899999999999999854
No 142
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.57 E-value=5.4e-13 Score=124.68 Aligned_cols=88 Identities=22% Similarity=0.339 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019359 255 EAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (342)
Q Consensus 255 ~~~~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 333 (342)
...+...+.+.+..... +.+++|||++++.++.+++.|.+.|+++..+||+++..+|..+++.|+.|+..|+|||+.++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 34456667777766543 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 019359 334 RGLGRITVC 342 (342)
Q Consensus 334 ~Gidip~v~ 342 (342)
+|+|+|+++
T Consensus 508 rGfdlp~v~ 516 (652)
T PRK05298 508 EGLDIPEVS 516 (652)
T ss_pred CCccccCCc
Confidence 999999974
No 143
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.55 E-value=5.5e-14 Score=120.67 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=92.7
Q ss_pred HHHhhHHHHh-------------cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 019359 53 IQAQGWPMAL-------------KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (342)
Q Consensus 53 ~Q~~~~~~~~-------------~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~ 119 (342)
||.+++..+. ..+.+++...+|+|||..++..+. .+...... .....+||+||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 5777776552 336789999999999987555443 33322110 012259999999 777999999
Q ss_pred HHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc---cccCCCCccEEEEeccchhhcCCChHHHH
Q 019359 120 ALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA---QHTNLRRVTYLVLDEADRMLDMGFEPQIR 196 (342)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~---~~~~~~~~~~iIvDE~h~~~~~~~~~~~~ 196 (342)
+.++.....+++..+.+...............+++++|++.+...... ..+..-.+++||+||+|.+-+.. .....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~-s~~~~ 155 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD-SKRYK 155 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT-SHHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc-ccccc
Confidence 999986656677777766522222233344689999999999811000 01111348999999999984432 33333
Q ss_pred HHHhhcCCCccEEEEEeecC
Q 019359 197 KIVTQIRPDRQTLYWSATWP 216 (342)
Q Consensus 197 ~~~~~~~~~~~~i~~SaT~~ 216 (342)
.+.. +. ...++++||||-
T Consensus 156 ~l~~-l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 156 ALRK-LR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHC-CC-ECEEEEE-SS-S
T ss_pred cccc-cc-cceEEeeccccc
Confidence 3333 54 677888999973
No 144
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=3.6e-14 Score=122.99 Aligned_cols=229 Identities=18% Similarity=0.153 Sum_probs=148.9
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
++-++-+|||.||||.- +++++.. ..+.++-.|.+-|+.++++.+++. |+.|..+.|.......
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVL 254 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecC
Confidence 34456679999999986 5566655 456899999999999999999884 7777777775443222
Q ss_pred HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHH
Q 019359 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLA 223 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 223 (342)
.. ...+..+=||.+... . -..+++.|+||.+++.++..+..|.+.+--+..+ =|-+.+- +.+-.+.
T Consensus 255 ~~--~~~a~hvScTVEM~s-------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad--EiHLCGe--psvldlV 320 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEMVS-------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD--EIHLCGE--PSVLDLV 320 (700)
T ss_pred CC--CCcccceEEEEEEee-------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh--hhhccCC--chHHHHH
Confidence 11 123456666654321 1 2458999999999999888777776654332211 1222222 2222333
Q ss_pred HHh---cCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCC-c
Q 019359 224 RQF---LRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWP-A 299 (342)
Q Consensus 224 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~ 299 (342)
+.. .++...+.. ++....-.-.+.+..-+....+|.-+ .|-|++....+...+.+.|.. +
T Consensus 321 ~~i~k~TGd~vev~~--------------YeRl~pL~v~~~~~~sl~nlk~GDCv--V~FSkk~I~~~k~kIE~~g~~k~ 384 (700)
T KOG0953|consen 321 RKILKMTGDDVEVRE--------------YERLSPLVVEETALGSLSNLKPGDCV--VAFSKKDIFTVKKKIEKAGNHKC 384 (700)
T ss_pred HHHHhhcCCeeEEEe--------------ecccCcceehhhhhhhhccCCCCCeE--EEeehhhHHHHHHHHHHhcCcce
Confidence 333 223222211 11111111111333344444445533 445888899999999988765 9
Q ss_pred EeecCCCCHHHHHHHHHHHhc--CCCCEEEEecccccCCCC
Q 019359 300 LSIHGDKNQSERDWVLAEFRS--GRSPIMTATDVAARGLGR 338 (342)
Q Consensus 300 ~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t~~~~~Gidi 338 (342)
.+++|+.|++.|...-..|++ ++++|||||+++++|+|+
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL 425 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL 425 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc
Confidence 999999999999999999987 899999999999999987
No 145
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.53 E-value=5.9e-14 Score=102.03 Aligned_cols=137 Identities=22% Similarity=0.198 Sum_probs=80.9
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcch
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
.+|+-.++.+.+|+|||.-.+.-++...... +.++|||.|++.++..+.+.++.. .+.+.. ..-.
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~----~~~~~t---~~~~- 66 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL----PVRFHT---NARM- 66 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS----SEEEES---TTSS-
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC----CcccCc---eeee-
Confidence 3566678899999999987666566555443 778999999999999888777652 333321 1100
Q ss_pred hhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc--CCCccEEEEEeecCchH
Q 019359 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RPDRQTLYWSATWPREV 219 (342)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~~~~~i~~SaT~~~~~ 219 (342)
.....+.-|-+.|+.++..++.+ ......+++||+||||-. +.. .-.....+..+ .....+|+|||||+...
T Consensus 67 ---~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~-sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 ---RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPT-SIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHH-HHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred ---ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHH-HHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 01123466888999998887666 444678999999999953 221 11111122221 23457999999998654
No 146
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.45 E-value=6.7e-12 Score=107.76 Aligned_cols=128 Identities=24% Similarity=0.304 Sum_probs=90.4
Q ss_pred CCcHHHHhhHHHHhcC-----CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 49 EPTPIQAQGWPMALKG-----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~-----~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+-|+|.+.+.++... ...++...+|.|||.-.+..+++... +...||++|+.+| .||.+++.++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~---------ra~tLVvaP~VAl-mQW~nEI~~~ 253 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD---------RAPTLVVAPTVAL-MQWKNEIERH 253 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc---------cCCeeEEccHHHH-HHHHHHHHHh
Confidence 5789999999877654 34678899999999876655555332 3448999999998 6999999998
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccc--------cC-----C--CCccEEEEeccchhhc
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH--------TN-----L--RRVTYLVLDEADRMLD 188 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--------~~-----~--~~~~~iIvDE~h~~~~ 188 (342)
..+ .+.+...+|..... ....+ .++|++.+|+..+-....+.. .+ + -++--||+||||.+-+
T Consensus 254 T~g-slkv~~YhG~~R~~-nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 254 TSG-SLKVYIYHGAKRDK-NIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKD 330 (791)
T ss_pred ccC-ceEEEEEecccccC-CHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccc
Confidence 773 56666667665443 33333 358999999988766544311 10 1 1356799999998654
Q ss_pred C
Q 019359 189 M 189 (342)
Q Consensus 189 ~ 189 (342)
.
T Consensus 331 R 331 (791)
T KOG1002|consen 331 R 331 (791)
T ss_pred c
Confidence 3
No 147
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.45 E-value=3e-12 Score=120.61 Aligned_cols=260 Identities=15% Similarity=0.159 Sum_probs=174.8
Q ss_pred cHHHHhhHHHHhc-CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhcCCCC
Q 019359 51 TPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAG 128 (342)
Q Consensus 51 ~~~Q~~~~~~~~~-~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~-~~~~~~~ 128 (342)
.+.|.+.++.+.+ ++++++.+|+|+|||.++-++++.. ....++++++|..+.+...++.|. +|....|
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~---------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP---------DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC---------ccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 7789999887654 5789999999999999876665541 125689999999999987776554 6877889
Q ss_pred eEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCCh------HHHHHHHhhc
Q 019359 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFE------PQIRKIVTQI 202 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~------~~~~~~~~~~ 202 (342)
..+..+.|..+...... ...+|+|+||+++-.+ + ..+.+++.|+||.|.+.+. ++ -+.+.+...+
T Consensus 1216 ~~~~~l~ge~s~~lkl~---~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q~ 1286 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDLKLL---QKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIASQL 1286 (1674)
T ss_pred ceEEecCCccccchHHh---hhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHHHH
Confidence 99998888877654432 3478999999987554 2 4677999999999987632 22 1256666667
Q ss_pred CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEech-h----hHHHHHHHHHHhh-cCCCcEE
Q 019359 203 RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE-A----EKYNRLIKLLKEV-MDGSRIL 276 (342)
Q Consensus 203 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~l~~~l~~~-~~~~~~l 276 (342)
.++.+++++|..+...-.- ........+.+.++..+.+..++........ . ...+.....+.++ ..+++.+
T Consensus 1287 ~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~ 1363 (1674)
T KOG0951|consen 1287 EKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAI 1363 (1674)
T ss_pred HhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeE
Confidence 7788999999887554222 2333344444444433333333322222211 1 1122222333333 2478899
Q ss_pred EEeCCchhHHHHHHHHHh----------------------CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 277 IFTETKKGCDQVTRQLRM----------------------DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 277 vf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
||+++++++..++..|-. ...+..+=|.+++..+....-..|..|.++|+|...-
T Consensus 1364 vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1364 VFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred EEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 999999999988854421 1122333377888888888889999999998887644
No 148
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=6.4e-12 Score=113.58 Aligned_cols=224 Identities=19% Similarity=0.220 Sum_probs=118.0
Q ss_pred HhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhcC-CCCeEEE
Q 019359 55 AQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGS-RAGIRST 132 (342)
Q Consensus 55 ~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~-~~~~-~~~~~~~ 132 (342)
+++++.|..+.-++++|.||+|||.- +.-.+....-....... +.-+=|--|++.-+..+++... .++. ...+.+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQ-vPQFLYEAGf~s~~~~~-~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQ-VPQFLYEAGFASEQSSS-PGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcccc-chHHHHHcccCCccCCC-CCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 45566666777899999999999964 32223222222221111 3356677899888877765443 3333 1122222
Q ss_pred EEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhh-cCC----ChHHHHHHHhhcC----
Q 019359 133 CIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML-DMG----FEPQIRKIVTQIR---- 203 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~-~~~----~~~~~~~~~~~~~---- 203 (342)
.-+.+.-. ....|-+.|-+.|++-+++... +.+++.||+||||.=. +.+ ....+..+.+...
T Consensus 340 IRfd~ti~--------e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 340 IRFDGTIG--------EDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred EEeccccC--------CCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 22222211 1367999999999998887544 6889999999999511 100 1111112222221
Q ss_pred --CCccEEEEEeecCchHHHHHHHhcCCCe-EEEecccccccccccceEEEEechh----hHHHHHHHHHHhhcCCCcEE
Q 019359 204 --PDRQTLYWSATWPREVETLARQFLRNPY-KVIIGSLELKANQSINQVVEVVTEA----EKYNRLIKLLKEVMDGSRIL 276 (342)
Q Consensus 204 --~~~~~i~~SaT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~l 276 (342)
+.-+.|+||||+.-+...--..++..+- .+.+... .-+..+ .+...... +-....+.+-++ .+.+.+|
T Consensus 411 ~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdAR--QfPVsI--HF~krT~~DYi~eAfrKtc~IH~k-LP~G~IL 485 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDAR--QFPVSI--HFNKRTPDDYIAEAFRKTCKIHKK-LPPGGIL 485 (1172)
T ss_pred ccCceeEEEEeeeEEecccccCceecCCCCceeeeecc--cCceEE--EeccCCCchHHHHHHHHHHHHhhc-CCCCcEE
Confidence 2568999999974321111112222111 1111111 011111 11111111 122223332222 3467799
Q ss_pred EEeCCchhHHHHHHHHHh
Q 019359 277 IFTETKKGCDQVTRQLRM 294 (342)
Q Consensus 277 vf~~~~~~~~~l~~~L~~ 294 (342)
||+-.-.+++.+.+.|++
T Consensus 486 VFvTGQqEV~qL~~kLRK 503 (1172)
T KOG0926|consen 486 VFVTGQQEVDQLCEKLRK 503 (1172)
T ss_pred EEEeChHHHHHHHHHHHh
Confidence 999999999999988875
No 149
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.43 E-value=9e-12 Score=106.75 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=169.8
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
.++|.....++..-+.++...-...|.++.+.+..+..++-+++.|.||+|||.-.--..+...... ..-+..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceee
Confidence 6778888999998899988776677887888888888899999999999999964222222222221 233677
Q ss_pred EcCcHHHHHHHHHHHHH-hcCCCCeEEEEE--ecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEec
Q 019359 106 LAPTRELAVQIQEEALK-FGSRAGIRSTCI--YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (342)
--|++.-+.+++..... +--..|-++... +.+-...+ .-+-++|-+.|++-..... .+..+++||+||
T Consensus 97 TQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~--------T~Lky~tDgmLlrEams~p-~l~~y~viiLDe 167 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPN--------TLLKYCTDGMLLREAMSDP-LLGRYGVIILDE 167 (699)
T ss_pred cCchHHHHHHHHHHHHHHhccccchhccccccccccCChh--------HHHHHhcchHHHHHHhhCc-ccccccEEEech
Confidence 77888888777655433 211122221110 00000000 0112345555555433332 357899999999
Q ss_pred cch-hhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHH
Q 019359 183 ADR-MLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (342)
Q Consensus 183 ~h~-~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (342)
||. .++ ......++.+...- ++-++|.||||+.. .-...+++++-...+.. ...+..++-...+.+..+
T Consensus 168 ahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg-----~~PvEi~Yt~e~erDylE 238 (699)
T KOG0925|consen 168 AHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG-----THPVEIFYTPEPERDYLE 238 (699)
T ss_pred hhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCC-----CCceEEEecCCCChhHHH
Confidence 995 111 11122333333333 58899999999754 23345666655555432 122333443444455555
Q ss_pred HHHHHHHhhc---CCCcEEEEeCCchhHHHHHHHHHhC---------CCCcEeecCCCCHHHHHHHHHHHhc---C--CC
Q 019359 261 RLIKLLKEVM---DGSRILIFTETKKGCDQVTRQLRMD---------GWPALSIHGDKNQSERDWVLAEFRS---G--RS 323 (342)
Q Consensus 261 ~l~~~l~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~---~--~~ 323 (342)
..+..+.+.. ..+-++||....++.+...+.+.+. .+++.-+| +++...+.+--.. | ..
T Consensus 239 aairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~R 314 (699)
T KOG0925|consen 239 AAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGR 314 (699)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccc
Confidence 5554444432 2567999999999999988888743 23455565 2222333222211 1 24
Q ss_pred CEEEEecccccCCCCCCC
Q 019359 324 PIMTATDVAARGLGRITV 341 (342)
Q Consensus 324 ~vlv~t~~~~~Gidip~v 341 (342)
+|+|+|++++..+.+++|
T Consensus 315 kvVvstniaetsltidgi 332 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGI 332 (699)
T ss_pred eEEEEecchheeeeeccE
Confidence 699999999999988876
No 150
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.42 E-value=5.4e-12 Score=112.48 Aligned_cols=139 Identities=21% Similarity=0.181 Sum_probs=90.5
Q ss_pred CCcHHHHhhHHHHhc-----CCCEEEEcCCCCchhhHhHHHHHHhhhcC--CCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALK-----GRDLIGIAETGSGKTLSYLLPAFVHVSAQ--PRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~-----~~~~l~~~~tG~GKT~~~~~~~~~~~~~~--~~~~~~~~~~vlil~p~~~l~~q~~~~~~ 121 (342)
.+-|+|..++.++.- +...++...+|.|||++.+..++..-... ...........||+|| ..|..||..++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHHH
Confidence 578999999987653 35789999999999997655554432221 0000011225999999 567799999988
Q ss_pred HhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHH----HHhccc--cCC--CCccEEEEeccchhhcC
Q 019359 122 KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID----MLEAQH--TNL--RRVTYLVLDEADRMLDM 189 (342)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~----~~~~~~--~~~--~~~~~iIvDE~h~~~~~ 189 (342)
.-....-+.+..+||.....-. ....+.+||+|+||.-+.+ -....+ ..+ -.+..||+||||.+-+.
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~-~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREIS-AKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHHhhcceEEEEecCCccccCC-HHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 7656667888888887642222 2334469999999975544 111111 111 14678999999986543
No 151
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.42 E-value=1.7e-11 Score=118.59 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=91.8
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
+..+++--+|||||++.+..+-. +...+ ..+++++||.++.|-.|+...+..+........ ...+...-.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~~~-----~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLELP-----KNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHhcc-----CCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 46899999999999986654433 33332 278899999999999999999999865443222 122222222
Q ss_pred HhhcC-CCcEEEeChHHHHHHHhcccc-CC-CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCc
Q 019359 145 RDLRR-GVEIVIATPGRLIDMLEAQHT-NL-RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (342)
Q Consensus 145 ~~~~~-~~~iiv~T~~~l~~~~~~~~~-~~-~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 217 (342)
..+.. ...|+|||.+++......... .. .+--++|+||||+.- ++..-..+...++ +...+++|+||-.
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTPi~ 415 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTPIF 415 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCccc
Confidence 33332 348999999999887655411 12 223457789999842 3444444444454 4889999999843
No 152
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=5.5e-12 Score=118.36 Aligned_cols=126 Identities=22% Similarity=0.232 Sum_probs=84.5
Q ss_pred CcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCe
Q 019359 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGI 129 (342)
Q Consensus 50 l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~ 129 (342)
++++-.+++-.+.-.+.-+..+.||-|||+++.+|+.-.... |.-|-|++.+..|+..-.+++..+-.++|+
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~--------GkgVHvVTVNDYLA~RDaewmgply~fLGL 239 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT--------GNGVHVVTVNDYLAKRDSEWMGPLYEFHGL 239 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc--------CCCcEEEEechhhhhccHHHHHHHHHHhCC
Confidence 344444444444445667889999999999998887665555 445788899999999999999988888999
Q ss_pred EEEEEecCC-cchhhHHhhcCCCcEEEeChHHH-HHHHhcc------ccCCCCccEEEEeccch
Q 019359 130 RSTCIYGGA-PKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADR 185 (342)
Q Consensus 130 ~~~~~~~~~-~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~ 185 (342)
.+.++.... +.......+ .+||+++|..-+ .+++..+ ......+.+.||||++.
T Consensus 240 svg~i~~~~~~~~~rr~aY--~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDS 301 (1112)
T PRK12901 240 SVDCIDKHQPNSEARRKAY--NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDS 301 (1112)
T ss_pred ceeecCCCCCCHHHHHHhC--CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhh
Confidence 998886533 332222222 478888886543 1222211 11234577888888887
No 153
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.36 E-value=1.7e-11 Score=103.49 Aligned_cols=76 Identities=28% Similarity=0.285 Sum_probs=58.5
Q ss_pred cCCCCCcHHHHhhH----HHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 45 LGFVEPTPIQAQGW----PMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~----~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
+.| .++|.|.+.+ ..+..++++++.+|||+|||++++.+++..+....... .+.+++|.+++..+..|....+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHH
Confidence 456 5699999954 45556889999999999999999999987765432210 1347999999999988887777
Q ss_pred HHh
Q 019359 121 LKF 123 (342)
Q Consensus 121 ~~~ 123 (342)
++.
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 664
No 154
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.36 E-value=1.7e-11 Score=103.49 Aligned_cols=76 Identities=28% Similarity=0.285 Sum_probs=58.5
Q ss_pred cCCCCCcHHHHhhH----HHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 45 LGFVEPTPIQAQGW----PMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~----~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
+.| .++|.|.+.+ ..+..++++++.+|||+|||++++.+++..+....... .+.+++|.+++..+..|....+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHH
Confidence 456 5699999954 45556889999999999999999999987765432210 1347999999999988887777
Q ss_pred HHh
Q 019359 121 LKF 123 (342)
Q Consensus 121 ~~~ 123 (342)
++.
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 664
No 155
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.35 E-value=1.3e-11 Score=107.90 Aligned_cols=288 Identities=13% Similarity=0.022 Sum_probs=183.1
Q ss_pred HHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 43 AKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 43 ~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
+.+.-.....+|.+++..+..|++....-.+.+||++++..++.......+ ....++..|+++++....+.+.-
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceEE
Confidence 334445678899999999999999999999999999998887777655543 34468888988887654332211
Q ss_pred hc---CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCC----CccEEEEeccchhhcCCChH--
Q 019359 123 FG---SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLR----RVTYLVLDEADRMLDMGFEP-- 193 (342)
Q Consensus 123 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~----~~~~iIvDE~h~~~~~~~~~-- 193 (342)
.. +...-.++-.+++.+..........+.+++++.+..+......+..... ...++++||+|..... ++.
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~ 432 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALA 432 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHH
Confidence 10 0011123334455555555555556789999999887665444433322 3467899999964332 332
Q ss_pred --HHHHHHh---hc--CCCccEEEEEeecCchHHHHHHHhcCC-CeEEEecccccccccccceEEEEe---------chh
Q 019359 194 --QIRKIVT---QI--RPDRQTLYWSATWPREVETLARQFLRN-PYKVIIGSLELKANQSINQVVEVV---------TEA 256 (342)
Q Consensus 194 --~~~~~~~---~~--~~~~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 256 (342)
.++++.. .+ ..+.+++-.++|..+..... ....+- .......+.. +.....++.-. ..+
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~-~~~~~~~E~~Li~~DGS---Ps~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLR-SELANLSELELVTIDGS---PSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHH-HHhcCCcceEEEEecCC---CCccceEEEeCCCCCCcchhhhh
Confidence 2222222 21 34668888889987665443 434333 2222222111 11111111111 123
Q ss_pred hHHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHh----CCC----CcEeecCCCCHHHHHHHHHHHhcCCCCEEE
Q 019359 257 EKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRM----DGW----PALSIHGDKNQSERDWVLAEFRSGRSPIMT 327 (342)
Q Consensus 257 ~~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 327 (342)
.++....+++.+... +=++|.||++++-++.+....++ -+. .+..+.|+....+|..+.+..-.|++.-+|
T Consensus 509 ~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giI 588 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGII 588 (1034)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEE
Confidence 445555555555433 67899999999999987765543 222 256789999999999999999999999999
Q ss_pred EecccccCCCCCCC
Q 019359 328 ATDVAARGLGRITV 341 (342)
Q Consensus 328 ~t~~~~~Gidip~v 341 (342)
+|++++-|||+..+
T Consensus 589 aTNALELGIDIG~L 602 (1034)
T KOG4150|consen 589 ATNALELGIDIGHL 602 (1034)
T ss_pred ecchhhhccccccc
Confidence 99999999999875
No 156
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.34 E-value=4.5e-12 Score=117.03 Aligned_cols=280 Identities=18% Similarity=0.264 Sum_probs=163.5
Q ss_pred CCcHHHHhhHHHHhc----CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~----~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.+.+||...++++.+ +-+.++...||.|||.. .+..+.++....... |+ -||+||+..|. .|..++..|+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~~---GP-~LvivPlstL~-NW~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQMQ---GP-FLIIVPLSTLV-NWSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcccC---CC-eEEeccccccC-Cchhhccccc
Confidence 799999999987653 35789999999999975 444444444433321 44 48889999996 5777888876
Q ss_pred CCCCeEEEEEecCCcchhhH--HhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc
Q 019359 125 SRAGIRSTCIYGGAPKGPQI--RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (342)
+. +..+...|.......+ ......++|+++|++.+.+ ....+.--++.++||||.|++.+. ...+...+.-.
T Consensus 468 PS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~ 541 (1157)
T KOG0386|consen 468 PS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTH 541 (1157)
T ss_pred cc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhcc
Confidence 54 4444444443332222 1222458999999988754 111111124779999999997543 11222222211
Q ss_pred CCCccEEEEEeecCch----HHHHHHHhcC--------------------------------------------------
Q 019359 203 RPDRQTLYWSATWPRE----VETLARQFLR-------------------------------------------------- 228 (342)
Q Consensus 203 ~~~~~~i~~SaT~~~~----~~~~~~~~~~-------------------------------------------------- 228 (342)
-...+.+++|+||... +..+....+.
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRl 621 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRL 621 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhh
Confidence 1233344455553110 0000000000
Q ss_pred ---------CCeEEEe-----------------------cc----ccccc-------------ccc--------cceEE-
Q 019359 229 ---------NPYKVII-----------------------GS----LELKA-------------NQS--------INQVV- 250 (342)
Q Consensus 229 ---------~~~~~~~-----------------------~~----~~~~~-------------~~~--------~~~~~- 250 (342)
+.....+ .. ..... ++. +...+
T Consensus 622 KkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~ 701 (1157)
T KOG0386|consen 622 KKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYD 701 (1157)
T ss_pred hHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccC
Confidence 0000000 00 00000 000 00000
Q ss_pred --EEechhhHHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCC---CC
Q 019359 251 --EVVTEAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR---SP 324 (342)
Q Consensus 251 --~~~~~~~~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~ 324 (342)
.......+...+-.++-+... +++++.||.-..-..-+.++|.-.++...-+.|.+...+|...++.|+.-+ ..
T Consensus 702 ~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~ 781 (1157)
T KOG0386|consen 702 IKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFI 781 (1157)
T ss_pred hhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceee
Confidence 011112333333344433322 899999999999999999999988999999999999999999999998654 34
Q ss_pred EEEEecccccCCCCCC
Q 019359 325 IMTATDVAARGLGRIT 340 (342)
Q Consensus 325 vlv~t~~~~~Gidip~ 340 (342)
.|++|.+.+.|+|+-.
T Consensus 782 FllstragglglNlQt 797 (1157)
T KOG0386|consen 782 FLLSTRAGGLGLNLQT 797 (1157)
T ss_pred eeeeecccccccchhh
Confidence 8899999999998753
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.31 E-value=2.7e-10 Score=105.91 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=91.1
Q ss_pred EEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhh
Q 019359 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDL 147 (342)
Q Consensus 68 l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
+..+.+|+|||.+|+-.+...+.. |..+||++|...|..|+.+.++.... +..+..++++.+..+..+.+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 344446999999988766665554 67799999999999999999987421 24677788887666553333
Q ss_pred ---cC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC-----Ch-HHHHHHHhhcCCCccEEEEEeecCc
Q 019359 148 ---RR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----FE-PQIRKIVTQIRPDRQTLYWSATWPR 217 (342)
Q Consensus 148 ---~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~~-~~~~~~~~~~~~~~~~i~~SaT~~~ 217 (342)
.. ..+|+|+|...+ ..++.++++|||||-|.-.... |. ..+. ++.....+..+|+.|||++-
T Consensus 234 ~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA-~~Ra~~~~~~lvLgSaTPSl 305 (665)
T PRK14873 234 LAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVA-LLRAHQHGCALLIGGHARTA 305 (665)
T ss_pred HHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHH-HHHHHHcCCcEEEECCCCCH
Confidence 33 478999995322 3367789999999999754322 11 1122 22233357889999999765
Q ss_pred h
Q 019359 218 E 218 (342)
Q Consensus 218 ~ 218 (342)
+
T Consensus 306 e 306 (665)
T PRK14873 306 E 306 (665)
T ss_pred H
Confidence 4
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.30 E-value=3.3e-10 Score=107.10 Aligned_cols=168 Identities=20% Similarity=0.190 Sum_probs=97.6
Q ss_pred CCCcHHHHhhHHHHhc------CCC--EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 019359 48 VEPTPIQAQGWPMALK------GRD--LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~------~~~--~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~ 119 (342)
..-+.+|-.++..+.. .+. ++-.|.||+|||++ -.-++..+.... .|.|..|..-.|.|..|+-..
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~-----~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDK-----QGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCC-----CCceEEEEccccceeccchHH
Confidence 3456789999887653 122 44558999999986 444555555443 277888888888888888777
Q ss_pred HHHhcCCCCeEEEEEecCCc-------------------------------------------chhhHHhhc--------
Q 019359 120 ALKFGSRAGIRSTCIYGGAP-------------------------------------------KGPQIRDLR-------- 148 (342)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~-------- 148 (342)
+++-..-.+-...++.|+.. .......+.
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 77532222222222222210 000000000
Q ss_pred CCCcEEEeChHHHHHHHhccc---cCCC----CccEEEEeccchhhcCCChHHHHHHHhhc-CCCccEEEEEeecCchHH
Q 019359 149 RGVEIVIATPGRLIDMLEAQH---TNLR----RVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVE 220 (342)
Q Consensus 149 ~~~~iiv~T~~~l~~~~~~~~---~~~~----~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~ 220 (342)
-...++|||+++++....... ..+. .-+.+|+||+|..-.. ....+..++... ....++++||||+|+.+.
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 025799999999987653211 1111 1357999999974222 223334443322 236789999999988764
Q ss_pred HH
Q 019359 221 TL 222 (342)
Q Consensus 221 ~~ 222 (342)
..
T Consensus 640 ~~ 641 (1110)
T TIGR02562 640 KT 641 (1110)
T ss_pred HH
Confidence 43
No 159
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.28 E-value=6.6e-11 Score=88.33 Aligned_cols=87 Identities=41% Similarity=0.642 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEeccccc
Q 019359 256 AEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAAR 334 (342)
Q Consensus 256 ~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 334 (342)
+.+...+...+.+.. .++++||||++...++.+++.|.+.+.++..+||++++.+|..+++.|.++...+|++|+++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 367778888887765 4789999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 019359 335 GLGRITVC 342 (342)
Q Consensus 335 Gidip~v~ 342 (342)
|+|+|+++
T Consensus 91 G~d~~~~~ 98 (131)
T cd00079 91 GIDLPNVS 98 (131)
T ss_pred CcChhhCC
Confidence 99999753
No 160
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.26 E-value=1.8e-10 Score=103.19 Aligned_cols=127 Identities=21% Similarity=0.342 Sum_probs=94.5
Q ss_pred CCcHHHHhhHHHHh----cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~----~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|..||...++++. .|-+.++...+|.|||.- .+..++++......- | -.||++|...| +.|..++.+|+
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~nIw---G-PFLVVtpaStL-~NWaqEisrFl 640 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHNIW---G-PFLVVTPASTL-HNWAQEISRFL 640 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhccCC---C-ceEEeehHHHH-hHHHHHHHHhC
Confidence 45678888887765 467899999999999975 555667766543321 2 36999998888 78999999997
Q ss_pred CCCCeEEEEEecCCcchhhHHhh---------cCCCcEEEeChHHHHH---HHhccccCCCCccEEEEeccchhhc
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDL---------RRGVEIVIATPGRLID---MLEAQHTNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~iiv~T~~~l~~---~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (342)
+. +++.-..|+.+.....+.. ..+++|+|++++.+.. +++. -++.++|+|||+.+-.
T Consensus 641 P~--~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKS 709 (1185)
T KOG0388|consen 641 PS--FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKS 709 (1185)
T ss_pred cc--ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhh
Confidence 74 6888888998888776652 3468999999987642 2332 2367999999997543
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.20 E-value=4.8e-10 Score=103.92 Aligned_cols=274 Identities=22% Similarity=0.216 Sum_probs=165.1
Q ss_pred cHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeE
Q 019359 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (342)
Q Consensus 51 ~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~ 130 (342)
+++-.+.+..+.-...-+..+-||-|||+++.+++.-.... |..+.+++....|+..-.+++..+-.++|+.
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 33334444445555667889999999999988876544443 5568999999999999999999988889999
Q ss_pred EEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhcc------ccCCCCccEEEEeccchhh-cC--------C---C
Q 019359 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRML-DM--------G---F 191 (342)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~-~~--------~---~ 191 (342)
+.....+.........+ .+||+++|-.-+ .+++..+ ........+.|+||++.++ +. + .
T Consensus 152 vG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~ 229 (822)
T COG0653 152 VGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAED 229 (822)
T ss_pred eeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccccc
Confidence 99888887665555554 378999996543 1111111 1113347788888888722 10 0 0
Q ss_pred ----hHHHHHHHhhc-----------------------------------------------------------------
Q 019359 192 ----EPQIRKIVTQI----------------------------------------------------------------- 202 (342)
Q Consensus 192 ----~~~~~~~~~~~----------------------------------------------------------------- 202 (342)
...+..+...+
T Consensus 230 ~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVr 309 (822)
T COG0653 230 SSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVR 309 (822)
T ss_pred CchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEe
Confidence 00000000000
Q ss_pred ----------------------------------------------------CCCccEEEEEeecCchHHHHHHHhcCCC
Q 019359 203 ----------------------------------------------------RPDRQTLYWSATWPREVETLARQFLRNP 230 (342)
Q Consensus 203 ----------------------------------------------------~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 230 (342)
..-.+..+||+|.......+.. +++..
T Consensus 310 d~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~-iY~l~ 388 (822)
T COG0653 310 DGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDV-IYGLD 388 (822)
T ss_pred cCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhh-ccCCc
Confidence 0001333444443322222222 22222
Q ss_pred eEEEecccccccccccceEEEEechhhHHHHHHHHHHh-hcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHH
Q 019359 231 YKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQS 309 (342)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 309 (342)
..+.....+....+. . -........+...+++.+.. +..+.++||-+.+++.++.+.+.|.+.|++..++.......
T Consensus 389 vv~iPTnrp~~R~D~-~-D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~ 466 (822)
T COG0653 389 VVVIPTNRPIIRLDE-P-DLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAR 466 (822)
T ss_pred eeeccCCCcccCCCC-c-cccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHH
Confidence 222211111111111 1 12223445566666655554 44589999999999999999999999999999999887754
Q ss_pred HHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 310 ERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 310 ~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
+-..+...-. ...|-|||+++++|-||.
T Consensus 467 EA~Iia~AG~--~gaVTiATNMAGRGTDIk 494 (822)
T COG0653 467 EAEIIAQAGQ--PGAVTIATNMAGRGTDIK 494 (822)
T ss_pred HHHHHhhcCC--CCccccccccccCCcccc
Confidence 4444433332 234899999999999984
No 162
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.20 E-value=4.2e-10 Score=92.50 Aligned_cols=131 Identities=27% Similarity=0.308 Sum_probs=95.2
Q ss_pred HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
..|+ .|++.|.-+.-.+..|+ ++++.||-|||+++.+++.-.... |..|=|++.+..|+..-.+++..+
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHH
Confidence 3565 88888888876665554 999999999999987776665554 667999999999999999999999
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHH-HHhccc----c--CCCCccEEEEeccchhh
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID-MLEAQH----T--NLRRVTYLVLDEADRML 187 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~-~~~~~~----~--~~~~~~~iIvDE~h~~~ 187 (342)
-..+|+.+..+.++.+.......+. ++|+++|...+-. ++.... . ....++++||||++.++
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 8899999999999877654444443 6799999887643 333321 1 14678999999999865
No 163
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.15 E-value=1.2e-08 Score=89.41 Aligned_cols=181 Identities=20% Similarity=0.262 Sum_probs=123.5
Q ss_pred CCcEEEeChHHHHHHHhc------cccCCCCccEEEEeccchhhcCCChHHHHHHHhhc---CC----------------
Q 019359 150 GVEIVIATPGRLIDMLEA------QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI---RP---------------- 204 (342)
Q Consensus 150 ~~~iiv~T~~~l~~~~~~------~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~---~~---------------- 204 (342)
..||||++|=.|...+.. ....++++.++|+|.+|.++...|.. +..+++.+ |+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 479999999988877774 22347889999999999887655432 22222222 21
Q ss_pred -----CccEEEEEeecCchHHHHHHHhcCCCeEE-Eeccccc------ccccccceEEEEech-------hhHHHHHHH-
Q 019359 205 -----DRQTLYWSATWPREVETLARQFLRNPYKV-IIGSLEL------KANQSINQVVEVVTE-------AEKYNRLIK- 264 (342)
Q Consensus 205 -----~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~-------~~~~~~l~~- 264 (342)
-+|.|++|+...+.+..+....+.+.... .+..... .....+.+.+...+. +.+.+...+
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 25999999999988888888755443222 1111111 122333344433221 122222222
Q ss_pred HHHhhc---CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 265 LLKEVM---DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 265 ~l~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
++-... ..+++|||++|.-+--.+.++|++.++....++..++..+...+-..|..|+.++|+.|.-
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER 359 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTER 359 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhH
Confidence 111222 3578999999999999999999999999999999999999999999999999999999953
No 164
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.06 E-value=2e-08 Score=93.07 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=64.9
Q ss_pred HHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHh----------------------CCCCcEeecCCCCHHHHHHHHH
Q 019359 260 NRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRM----------------------DGWPALSIHGDKNQSERDWVLA 316 (342)
Q Consensus 260 ~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~~ 316 (342)
-.|+++|..... |.|+|||..+......|..+|.. .|...+-+.|.....+|..+.+
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 335555555433 78999999999999999999963 2556778899999999999999
Q ss_pred HHhcC-CC---CEEEEecccccCCCCCCC
Q 019359 317 EFRSG-RS---PIMTATDVAARGLGRITV 341 (342)
Q Consensus 317 ~f~~~-~~---~vlv~t~~~~~Gidip~v 341 (342)
.|++- +. -.||+|.+.+-|||+-..
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAA 1237 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAA 1237 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeec
Confidence 99853 22 289999999999997543
No 165
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.02 E-value=1.6e-09 Score=101.98 Aligned_cols=156 Identities=21% Similarity=0.290 Sum_probs=110.2
Q ss_pred CCcHHHHhhHHHHh----cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~----~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.||.||...++++. ++-|.|+...+|.|||. -.+.+++++..++..= |++ ||+||+..+. .|.-++++||
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTI-QtISllAhLACeegnW---GPH-LIVVpTsviL-nWEMElKRwc 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTI-QTISLLAHLACEEGNW---GPH-LIVVPTSVIL-NWEMELKRWC 688 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchh-HHHHHHHHHHhcccCC---CCc-eEEeechhhh-hhhHHHhhhC
Confidence 57999999888765 35689999999999996 4777788876653211 344 8889998884 6888999998
Q ss_pred CCCCeEEEEEecCCcchhhH-HhhcC--CCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhh
Q 019359 125 SRAGIRSTCIYGGAPKGPQI-RDLRR--GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (342)
. ++++...+|........ ..+.+ .++|.|++|..+.+-+..- .-..+.++|+||+|++-++. ...|..+++.
T Consensus 689 P--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AF--krkrWqyLvLDEaqnIKnfk-sqrWQAllnf 763 (1958)
T KOG0391|consen 689 P--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAF--KRKRWQYLVLDEAQNIKNFK-SQRWQALLNF 763 (1958)
T ss_pred C--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHH--Hhhccceeehhhhhhhcchh-HHHHHHHhcc
Confidence 8 56777788876555442 23332 3789999998876643321 12458899999999987763 4455555443
Q ss_pred cCCCccEEEEEeecCc
Q 019359 202 IRPDRQTLYWSATWPR 217 (342)
Q Consensus 202 ~~~~~~~i~~SaT~~~ 217 (342)
- ..+.+++|+|+..
T Consensus 764 n--sqrRLLLtgTPLq 777 (1958)
T KOG0391|consen 764 N--SQRRLLLTGTPLQ 777 (1958)
T ss_pred c--hhheeeecCCchh
Confidence 2 3567889999743
No 166
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.99 E-value=1e-09 Score=73.70 Aligned_cols=53 Identities=32% Similarity=0.490 Sum_probs=50.1
Q ss_pred HHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 290 RQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 290 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+.|++.++++..+||+++..+|..+++.|+.++..|||||+++++|+|+|+++
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~ 53 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDAS 53 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTES
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccc
Confidence 36888999999999999999999999999999999999999999999999874
No 167
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.91 E-value=5e-09 Score=86.57 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=50.0
Q ss_pred CCcHHHHhhHHHHhcCCC-EEEEcCCCCchhhHhHHHHHHhhhcC-CCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLSYLLPAFVHVSAQ-PRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~-~l~~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
+|.+.|..++..++.... .++.||+|+|||.+.. .++..+... .......+.++|+++|+..-+.+..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999888887 9999999999997533 344444110 000011377899999999999999888877
No 168
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.90 E-value=2.3e-09 Score=100.21 Aligned_cols=259 Identities=19% Similarity=0.203 Sum_probs=157.1
Q ss_pred HHHHhhHHHHhc-CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeE
Q 019359 52 PIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (342)
Q Consensus 52 ~~Q~~~~~~~~~-~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~ 130 (342)
|.|...+..+.. ..++++-+|||+|||.++-.+++..+...+ +.++++++|-++|+......+..-....|++
T Consensus 930 ~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g~k 1003 (1230)
T KOG0952|consen 930 PIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPGIK 1003 (1230)
T ss_pred CccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCCce
Confidence 344444443322 357889999999999999888888777654 6789999999999998777776543444888
Q ss_pred EEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc--cccCCCCccEEEEeccchhhcCCChHHHHHHHhhc------
Q 019359 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA--QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI------ 202 (342)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~------ 202 (342)
+..+.|+...... .....+++|+||++.-....+ ..-.+++++.+|+||.|.+ ..++++.+..+....
T Consensus 1004 ~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hll-g~~rgPVle~ivsr~n~~s~~ 1079 (1230)
T KOG0952|consen 1004 VIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLL-GEDRGPVLEVIVSRMNYISSQ 1079 (1230)
T ss_pred eEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccc-cCCCcceEEEEeeccccCccc
Confidence 8888887766522 122479999999998776663 2335788999999999964 444454444333222
Q ss_pred -CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccc-----cceEEEEechhhHHHHHHHHHHhhcCCCcEE
Q 019359 203 -RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQS-----INQVVEVVTEAEKYNRLIKLLKEVMDGSRIL 276 (342)
Q Consensus 203 -~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 276 (342)
+...+.+++|.-+... ..+..+++....+.+.++-.+.+.. ....+....-..+.......++.+.+..+++
T Consensus 1080 t~~~vr~~glsta~~na--~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~l 1157 (1230)
T KOG0952|consen 1080 TEEPVRYLGLSTALANA--NDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVL 1157 (1230)
T ss_pred cCcchhhhhHhhhhhcc--HHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceE
Confidence 2344666665443322 2333344433332222221111100 0111222222334444556677777788999
Q ss_pred EEeCCchhHH----HHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCC
Q 019359 277 IFTETKKGCD----QVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP 324 (342)
Q Consensus 277 vf~~~~~~~~----~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 324 (342)
||+.+++... .+...+....-+...++- +..+-+.++..-++..++
T Consensus 1158 ifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1158 IFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred EEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccchh
Confidence 9999877543 333333333334444443 366777788777766554
No 169
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.90 E-value=1e-07 Score=85.35 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=68.4
Q ss_pred HHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 41 VIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 41 ~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
.+...++.+|..-|..|+...+...-.|++||+|+|||.+....+...... .+..+|+.+|+..-++|+.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-------cCCceEEEcccchhHHHHHHHH
Confidence 555677888999999999999999999999999999998755444443333 2667999999999999999999
Q ss_pred HHhcCCCCeEEEEEecC
Q 019359 121 LKFGSRAGIRSTCIYGG 137 (342)
Q Consensus 121 ~~~~~~~~~~~~~~~~~ 137 (342)
.+. |+++..+...
T Consensus 475 h~t----gLKVvRl~ak 487 (935)
T KOG1802|consen 475 HKT----GLKVVRLCAK 487 (935)
T ss_pred Hhc----CceEeeeehh
Confidence 874 5666655443
No 170
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.89 E-value=8.7e-08 Score=94.54 Aligned_cols=136 Identities=22% Similarity=0.201 Sum_probs=90.1
Q ss_pred CCCcHHHHhhHHHHh-----cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 48 VEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~-----~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
..++++|.+.+.++. .+.+.++...+|.|||+..+..+.. ....... ..+..++++|.. +..+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~~---~~~~~liv~p~s-~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIKV---YLGPALIVVPAS-LLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhcccC---CCCCeEEEecHH-HHHHHHHHHhh
Confidence 468999999987754 2567888899999999764444333 2222111 034689999964 55789999999
Q ss_pred hcCCCCeEEEEEecCCcc----hhhHHhhcCC-----CcEEEeChHHHHHHH-hccccCCCCccEEEEeccchhhcC
Q 019359 123 FGSRAGIRSTCIYGGAPK----GPQIRDLRRG-----VEIVIATPGRLIDML-EAQHTNLRRVTYLVLDEADRMLDM 189 (342)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~iiv~T~~~l~~~~-~~~~~~~~~~~~iIvDE~h~~~~~ 189 (342)
|.+.... +...+|.... ......+... ++++++|++.+.+.. ......-..++.+|+||+|.+.+.
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 8776553 5556665542 3334433332 789999999988732 112223345899999999996554
No 171
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.86 E-value=1.8e-08 Score=80.22 Aligned_cols=123 Identities=21% Similarity=0.223 Sum_probs=70.7
Q ss_pred CCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC
Q 019359 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~ 126 (342)
+|++.|.+++..+..+ +-.++.||.|+|||.+ +..+...+... +.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-------g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-------GKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-------CCeEEEECCcHHHHHHHHHhhC-----
Confidence 4788999999998654 3477889999999975 44455554442 6789999999988877655521
Q ss_pred CCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc----CCCCccEEEEeccchhhcCCChHHHHHHHhhc
Q 019359 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT----NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~----~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (342)
... .|..+++........ .....+++||||+..+. ...+..++...
T Consensus 68 --~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 68 --IEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp --S-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred --cch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 111 122222211111110 14557899999999863 44566666666
Q ss_pred CCCccEEEEEee
Q 019359 203 RPDRQTLYWSAT 214 (342)
Q Consensus 203 ~~~~~~i~~SaT 214 (342)
+.....+.+.+-
T Consensus 118 ~~~~~klilvGD 129 (196)
T PF13604_consen 118 KKSGAKLILVGD 129 (196)
T ss_dssp -T-T-EEEEEE-
T ss_pred HhcCCEEEEECC
Confidence 553334445555
No 172
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.85 E-value=5.5e-08 Score=80.32 Aligned_cols=157 Identities=13% Similarity=0.077 Sum_probs=101.9
Q ss_pred CCcHHHHhhHHHHh----------cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMAL----------KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~----------~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~ 118 (342)
.++..|.+++-... .+..+++-..||.||-......++..+... ..+.|+++.+..|.....+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RKRAVWVSVSNDLKYDAER 109 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CCceEEEECChhhhhHHHH
Confidence 56778888775443 134577888999999988776677776663 4469999999999999889
Q ss_pred HHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccc---cC-------C--CCccEEEEeccchh
Q 019359 119 EALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH---TN-------L--RRVTYLVLDEADRM 186 (342)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~-------~--~~~~~iIvDE~h~~ 186 (342)
.++.++.. .+.+..+..-..... ......|+++|+.+|........ .. + ..=.+||+||||..
T Consensus 110 Dl~DIG~~-~i~v~~l~~~~~~~~----~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 110 DLRDIGAD-NIPVHPLNKFKYGDI----IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHHhCCC-cccceechhhccCcC----CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 99987554 344433332111110 11235799999998876543210 00 0 12247889999987
Q ss_pred hcCCC--------hHHHHHHHhhcCCCccEEEEEeecCch
Q 019359 187 LDMGF--------EPQIRKIVTQIRPDRQTLYWSATWPRE 218 (342)
Q Consensus 187 ~~~~~--------~~~~~~~~~~~~~~~~~i~~SaT~~~~ 218 (342)
.+... ...+..+.+.++ +.+++++|||...+
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 65432 134444555564 67799999997554
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.84 E-value=9.7e-08 Score=90.93 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=86.0
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH---------HhcCCCCeEEEEEe
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL---------KFGSRAGIRSTCIY 135 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~---------~~~~~~~~~~~~~~ 135 (342)
.++.+.|+||+|||.+|+-.++....... -.++||+||+.++..-+...++ .......+....+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 47899999999999998887766544421 4579999999999877665543 21222234554454
Q ss_pred cCC-------cchhhHHhhcC-------CCcEEEeChHHHHHHHh--cc--------c-cC---CC-CccEEEEeccchh
Q 019359 136 GGA-------PKGPQIRDLRR-------GVEIVIATPGRLIDMLE--AQ--------H-TN---LR-RVTYLVLDEADRM 186 (342)
Q Consensus 136 ~~~-------~~~~~~~~~~~-------~~~iiv~T~~~l~~~~~--~~--------~-~~---~~-~~~~iIvDE~h~~ 186 (342)
++. +....++.+.. ...|.++|.+.+..-.. .. . .+ +. .--+||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 432 11223333322 36899999998865211 00 0 11 11 1236889999998
Q ss_pred hcCCChHHHHHHHhhcCCCccEEEEEeecCc
Q 019359 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (342)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 217 (342)
... ...+..+ ..+++. -++.+|||.+.
T Consensus 214 ~~~--~k~~~~i-~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 214 PRD--NKFYQAI-EALKPQ-MIIRFGATFPD 240 (986)
T ss_pred Ccc--hHHHHHH-HhcCcc-cEEEEeeecCC
Confidence 542 3345555 444433 35669999876
No 174
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5.4e-08 Score=84.87 Aligned_cols=282 Identities=23% Similarity=0.254 Sum_probs=165.2
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEE-cCCCCch--hhHhHHHHHHhhhcC--------CC-ccC--------------CCCc
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGI-AETGSGK--TLSYLLPAFVHVSAQ--------PR-LVQ--------------GEGP 101 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~-~~tG~GK--T~~~~~~~~~~~~~~--------~~-~~~--------------~~~~ 101 (342)
..+++.|.+++..+.+.++++.. +..+.|+ +-+|++-++.++... .+ .++ -..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 47899999999887777887754 3344455 345777777766432 11 111 1148
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcCCCCe-EE-----EEE---ecC---------------------Ccchhh--------
Q 019359 102 IVLVLAPTRELAVQIQEEALKFGSRAGI-RS-----TCI---YGG---------------------APKGPQ-------- 143 (342)
Q Consensus 102 ~vlil~p~~~l~~q~~~~~~~~~~~~~~-~~-----~~~---~~~---------------------~~~~~~-------- 143 (342)
+||||||+++-|-.+...+..+..+.+. .. ..+ +++ ......
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999888887776333221 00 001 111 000000
Q ss_pred --HHhh--cCCCcEEEeChHHHHHHHhccc------cCCCCccEEEEeccchhhcCCChHHHHHHHhhc---CCC-----
Q 019359 144 --IRDL--RRGVEIVIATPGRLIDMLEAQH------TNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI---RPD----- 205 (342)
Q Consensus 144 --~~~~--~~~~~iiv~T~~~l~~~~~~~~------~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~---~~~----- 205 (342)
+..+ ....||+||+|=.|.-.+.... ..++++.++|||.+|.++...|...+ .+...+ |..
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~-~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLL-HIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHhhcCcccccCCC
Confidence 0000 1247999999988866666322 13678899999999998776554333 333333 211
Q ss_pred ----------------ccEEEEEeecCchHHHHHHHhcCCCeEEEeccc----------ccccccccceEEEEech-hhH
Q 019359 206 ----------------RQTLYWSATWPREVETLARQFLRNPYKVIIGSL----------ELKANQSINQVVEVVTE-AEK 258 (342)
Q Consensus 206 ----------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~ 258 (342)
+|.+++|+=-......++..++.+...-..... ..+... +.+.+...+- +.-
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Q-vf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQ-VFQRIEVKSIIETP 532 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhh-hhhheeccCcccCc
Confidence 244555544444444444444433222111111 001111 1111111111 111
Q ss_pred HHHHHHHHHhhcC------CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 259 YNRLIKLLKEVMD------GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 259 ~~~l~~~l~~~~~------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
......+.....+ ...+|||.|+.-+--.+..++++.++....++...+.....++-+.|-.|...||+-|.-
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 1122222222222 456899999999999999999999999999999888888888899999999999999954
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.80 E-value=6.3e-09 Score=82.14 Aligned_cols=145 Identities=15% Similarity=0.147 Sum_probs=72.5
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC-
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR- 126 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~- 126 (342)
...+..|..++..+...+-+++.||.|+|||+.++..++..+.... -.++++.-|...... .+. |.++
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~------~~kiii~Rp~v~~~~----~lG-flpG~ 71 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE------YDKIIITRPPVEAGE----DLG-FLPGD 71 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-------SEEEEEE-S--TT---------SS---
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC------CcEEEEEecCCCCcc----ccc-cCCCC
Confidence 3567899999999998888999999999999998888888876621 457888878764311 111 1110
Q ss_pred CCeEEEEEe-------cCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHH
Q 019359 127 AGIRSTCIY-------GGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 199 (342)
Q Consensus 127 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~ 199 (342)
..-+...+. ...........+.....|-+.....+ .... +. -.+||+|||+++ ....++.++
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i----RGrt--~~-~~~iIvDEaQN~----t~~~~k~il 140 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI----RGRT--FD-NAFIIVDEAQNL----TPEELKMIL 140 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG----TT----B--SEEEEE-SGGG------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh----cCcc--cc-ceEEEEecccCC----CHHHHHHHH
Confidence 000000000 00000111112222334444443222 1111 12 378999999987 567888889
Q ss_pred hhcCCCccEEEEEee
Q 019359 200 TQIRPDRQTLYWSAT 214 (342)
Q Consensus 200 ~~~~~~~~~i~~SaT 214 (342)
.+...+++++++--.
T Consensus 141 TR~g~~skii~~GD~ 155 (205)
T PF02562_consen 141 TRIGEGSKIIITGDP 155 (205)
T ss_dssp TTB-TT-EEEEEE--
T ss_pred cccCCCcEEEEecCc
Confidence 998877777766544
No 176
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.75 E-value=2.2e-08 Score=67.84 Aligned_cols=56 Identities=34% Similarity=0.506 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 287 QVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 287 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.+++.|++.++.+..+||++++++|..+++.|++++..||++|+++++|+|+|+++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~ 57 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVD 57 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCC
Confidence 46778888899999999999999999999999999999999999999999999764
No 177
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.61 E-value=9.1e-07 Score=70.58 Aligned_cols=127 Identities=21% Similarity=0.340 Sum_probs=82.3
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhc---CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEE
Q 019359 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALK---GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (342)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~---~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vl 104 (342)
.|+....|+++.-.+. +-.-+|+.|.++...+.+ +.+.+.++-||.|||.+ ++|++..+..+. ..-+.
T Consensus 4 ~w~p~~~P~wLl~E~e--~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE--SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHH--cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEE
Confidence 4666666777655444 333899999999888765 47899999999999987 666666655542 34567
Q ss_pred EEcCcHHHHHHHHHHHHH-hcCCCCeEEE--EEecCCcchhh-H-------HhhcCCCcEEEeChHHHHHH
Q 019359 105 VLAPTRELAVQIQEEALK-FGSRAGIRST--CIYGGAPKGPQ-I-------RDLRRGVEIVIATPGRLIDM 164 (342)
Q Consensus 105 il~p~~~l~~q~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~-~-------~~~~~~~~iiv~T~~~l~~~ 164 (342)
+++| ++|..|..+.+.. ++.-.+-++. -+.-....... . ....+...|+++||+.++.+
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 7777 6788898887764 4333332332 23333322211 1 12234578999999998764
No 178
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.53 E-value=9.2e-07 Score=82.85 Aligned_cols=66 Identities=23% Similarity=0.160 Sum_probs=52.9
Q ss_pred CCcHHHHhhHHHHhcC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
.+.+.|..++..+... ...++.||+|+|||.+....+...+.. +.++|+++|+..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~--------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR--------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc--------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 6789999999987766 678899999999998754444333332 56899999999999999888876
No 179
>PRK10536 hypothetical protein; Provisional
Probab=98.53 E-value=2.2e-06 Score=69.76 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=79.0
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHH-------HHH
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV-------QIQ 117 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~-------q~~ 117 (342)
+++...+..|...+..+.....+++.||+|+|||+.++..++..+.... -.++++.=|...... ...
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~------~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD------VDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC------eeEEEEeCCCCCchhhhCcCCCCHH
Confidence 4555677789999998888888999999999999987777776654321 234566555543211 011
Q ss_pred HHHHHh----cCCCCeEEEEEecCCcchhhHHhh--cCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCC
Q 019359 118 EEALKF----GSRAGIRSTCIYGGAPKGPQIRDL--RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (342)
Q Consensus 118 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (342)
+.+..| .+.+.. +.+. .....+ .....|-|.... ++....+ . -++||+|||+++ .
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~----ymRGrtl--~-~~~vIvDEaqn~----~ 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFA----YMRGRTF--E-NAVVILDEAQNV----T 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHH----HhcCCcc--c-CCEEEEechhcC----C
Confidence 111111 000000 0010 111111 012334444432 2222222 1 479999999986 4
Q ss_pred hHHHHHHHhhcCCCccEEEE
Q 019359 192 EPQIRKIVTQIRPDRQTLYW 211 (342)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~ 211 (342)
...+..++..+..+.+++++
T Consensus 190 ~~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 190 AAQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHhhcCCCCEEEEe
Confidence 56778888888766666543
No 180
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.51 E-value=1.9e-06 Score=79.75 Aligned_cols=140 Identities=19% Similarity=0.180 Sum_probs=85.1
Q ss_pred HHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEE
Q 019359 52 PIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRS 131 (342)
Q Consensus 52 ~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~ 131 (342)
++|+.++...+.++-.++.|++|+|||.+. ..++..+...... ....++++.+||-.-+..+.+.+..........
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRKAVKNLAAA- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-
Confidence 689999999999999999999999999863 3333333221110 012579999999888888777765532211110
Q ss_pred EEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc------cccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCC
Q 019359 132 TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA------QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD 205 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~ 205 (342)
... .....+-..|.++++..... ...+...+|++||||+-++ -...+..+++.++..
T Consensus 224 ---------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 ---------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPPN 286 (586)
T ss_pred ---------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCCC
Confidence 000 00111224454444433211 1112235899999999976 344666777778777
Q ss_pred ccEEEEE
Q 019359 206 RQTLYWS 212 (342)
Q Consensus 206 ~~~i~~S 212 (342)
.++|++-
T Consensus 287 ~rlIlvG 293 (586)
T TIGR01447 287 TKLILLG 293 (586)
T ss_pred CEEEEEC
Confidence 7777653
No 181
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.49 E-value=2.8e-06 Score=80.90 Aligned_cols=128 Identities=20% Similarity=0.129 Sum_probs=79.6
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.++ .+++.|.+++..+..++-.++.|++|+|||.+ +-.++..+.... ....+++++||-.-+..+.+..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~~---- 388 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEVT---- 388 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHhc----
Confidence 454 89999999999998888899999999999975 334444444321 0156888999987776543321
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc-----cccCCCCccEEEEeccchhhcCCChHHHHHHH
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-----QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 199 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-----~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~ 199 (342)
+... .|.++++..... ........+++||||++++. ...+..++
T Consensus 389 ---g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll 437 (720)
T TIGR01448 389 ---GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLL 437 (720)
T ss_pred ---CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHH
Confidence 1111 122222211000 00112347899999999873 34556666
Q ss_pred hhcCCCccEEEEEee
Q 019359 200 TQIRPDRQTLYWSAT 214 (342)
Q Consensus 200 ~~~~~~~~~i~~SaT 214 (342)
..++...++|++--+
T Consensus 438 ~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 438 AALPDHARLLLVGDT 452 (720)
T ss_pred HhCCCCCEEEEECcc
Confidence 777777777776433
No 182
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.48 E-value=1.9e-06 Score=79.87 Aligned_cols=142 Identities=19% Similarity=0.215 Sum_probs=87.1
Q ss_pred cHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeE
Q 019359 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (342)
Q Consensus 51 ~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~ 130 (342)
.++|+.++.....++-.++.|++|+|||.+. ..++..+..... ....++++++||-.-+..+.+.+..-....+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~~---~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhcC---CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 5799999998888888999999999999763 333333322110 114579999999999988887776532222110
Q ss_pred EEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc------cccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCC
Q 019359 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA------QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (342)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (342)
.... .....-..|.++++..... ...+.-.+|++||||+.++ -...+..+++.+++
T Consensus 230 -----------~~~~---~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~ 291 (615)
T PRK10875 230 -----------DEQK---KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPP 291 (615)
T ss_pred -----------hhhh---hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhccc
Confidence 0000 0011123444444332111 1112234799999999976 35566777788888
Q ss_pred CccEEEEEee
Q 019359 205 DRQTLYWSAT 214 (342)
Q Consensus 205 ~~~~i~~SaT 214 (342)
.+++|++--.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888877544
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.47 E-value=5e-07 Score=80.44 Aligned_cols=64 Identities=25% Similarity=0.172 Sum_probs=51.1
Q ss_pred CCcHHHHhhHHHHhcC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
.+.+-|..++...... .-.+++||+|+|||.+....+...+.. +.++|+.+|+..-+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHHh
Confidence 6778899999876666 457889999999999866656555555 678999999999998887753
No 184
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.45 E-value=9.6e-07 Score=77.33 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=58.9
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
-++|.|.+|||||++++- ++..+... ..+.++++++++..|...+.+.+..-...
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~~-----~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQNS-----EEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhcc-----ccCCceEEEEecchHHHHHHHHHhhhccc-------------------
Confidence 378999999999987544 33443111 12667899999999998888877663200
Q ss_pred hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc
Q 019359 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (342)
......+..+..+.............+|+|||||||++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0012233333333332221122346799999999999876
No 185
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.42 E-value=2.4e-06 Score=79.31 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=52.7
Q ss_pred cCCCCCcHHHHhhHHHHh----cCCCEEEEcCCCCchhhHhHHHHHHhhhcCC-----------C---------------
Q 019359 45 LGFVEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQP-----------R--------------- 94 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~----~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~-----------~--------------- 94 (342)
+.| +|++.|...+..+. ..++.++..|||+|||+..+-..++...... +
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 455 78999988776554 4588999999999999876554443321100 0
Q ss_pred --------ccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 95 --------LVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 95 --------~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.+....+++.+-+-|-.-..|+.+++++..
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 000113677777777777788888888753
No 186
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.25 E-value=2.2e-05 Score=70.23 Aligned_cols=153 Identities=17% Similarity=0.137 Sum_probs=81.0
Q ss_pred EEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-----hc-------CCCCeEEEEEe
Q 019359 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-----FG-------SRAGIRSTCIY 135 (342)
Q Consensus 68 l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~-----~~-------~~~~~~~~~~~ 135 (342)
++.|+||+|||++++..++...... -...|+.|....+..-+...+-. +. .+..+++..+.
T Consensus 1 lf~matgsgkt~~ma~lil~~y~kg-------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 1 LFEMATGSGKTLVMAGLILECYKKG-------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred CcccccCCChhhHHHHHHHHHHHhc-------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 3578999999998666666554442 33567777776666544332211 00 00011221111
Q ss_pred cCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc------CCCCccEE-EEeccchhhcCC---------ChHHHHHHH
Q 019359 136 GGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT------NLRRVTYL-VLDEADRMLDMG---------FEPQIRKIV 199 (342)
Q Consensus 136 ~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~------~~~~~~~i-IvDE~h~~~~~~---------~~~~~~~~~ 199 (342)
. ......+..|.++|.+.|...+-.... ++....+| +-||+|++.... -...+...+
T Consensus 74 ~-------fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v 146 (812)
T COG3421 74 N-------FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVV 146 (812)
T ss_pred c-------cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHH
Confidence 1 111234578999999999876655432 23334444 569999975432 111222211
Q ss_pred -hh--cCCCccEEEEEeecCchHHHHHHHhcCCCeEEEec
Q 019359 200 -TQ--IRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (342)
Q Consensus 200 -~~--~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
.. -.++.-++-+|||.+.. ..+..-+.+...+.+.
T Consensus 147 ~la~~~nkd~~~lef~at~~k~--k~v~~ky~dkiv~~y~ 184 (812)
T COG3421 147 KLALEQNKDNLLLEFSATIPKE--KSVEDKYEDKIVVTYT 184 (812)
T ss_pred HHHHhcCCCceeehhhhcCCcc--ccHHHHhccceEEeee
Confidence 11 23455677789998743 3334444555544443
No 187
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.24 E-value=3.4e-05 Score=73.88 Aligned_cols=121 Identities=21% Similarity=0.154 Sum_probs=73.0
Q ss_pred CCcHHHHhhHHHHhcC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCC
Q 019359 49 EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~ 127 (342)
.+++.|.+++..+..+ +-+++.|++|+|||.+ +-.+...+... +.++++++|+-..+..+.+. .
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~~-------g~~V~~~ApTg~Aa~~L~~~-------~ 416 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEAA-------GYRVIGAALSGKAAEGLQAE-------S 416 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHhC-------CCeEEEEeCcHHHHHHHHhc-------c
Confidence 7899999999988774 6678999999999975 33344444332 67799999997766554321 1
Q ss_pred CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhh-cCCCc
Q 019359 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ-IRPDR 206 (342)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~-~~~~~ 206 (342)
++... |..++..........+...+++||||+.++... .+..++.. .....
T Consensus 417 g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~ 468 (744)
T TIGR02768 417 GIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGA 468 (744)
T ss_pred CCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCC
Confidence 22111 222221111222223456899999999986433 33334432 23455
Q ss_pred cEEEEE
Q 019359 207 QTLYWS 212 (342)
Q Consensus 207 ~~i~~S 212 (342)
++|++-
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 555554
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=98.23 E-value=6.4e-06 Score=54.31 Aligned_cols=53 Identities=30% Similarity=0.347 Sum_probs=37.6
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
++-+++.+|+|+|||.+.+-.+...+..... .+.++++++|++..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~----~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARAD----PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CCCeEEEECCCHHHHHHHHHHH
Confidence 3445569999999997755555444432111 1567999999999999888877
No 189
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.20 E-value=6.8e-06 Score=69.25 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=51.8
Q ss_pred HHcCCCCCcHHHHhhHHHHhcCC--CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHH
Q 019359 43 AKLGFVEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (342)
Q Consensus 43 ~~~~~~~l~~~Q~~~~~~~~~~~--~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~ 113 (342)
+.||.......|..++..++... =+.+.|+.|+|||+.++.+.+.+....+. -.++++-=|+..+.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG 289 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVG 289 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcc
Confidence 45888778889999999888764 46678999999999999988888877654 34677777776654
No 190
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=98.18 E-value=1.3e-05 Score=75.44 Aligned_cols=127 Identities=23% Similarity=0.181 Sum_probs=83.2
Q ss_pred CCCCCcHHHHhhHHHHhcC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 46 GFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 46 ~~~~l~~~Q~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
-+..|...|++|+...+.. ...++.|=+|+|||.+....+-..+.. +++||+.+-|..-+..+.-.++.+
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~--------gkkVLLtsyThsAVDNILiKL~~~- 736 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL--------GKKVLLTSYTHSAVDNILIKLKGF- 736 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc--------CCeEEEEehhhHHHHHHHHHHhcc-
Confidence 3457889999999877665 457888999999998744433222222 778999999998888888888775
Q ss_pred CCCCeEEEEEecCCcchhhHHh-----------------hcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRD-----------------LRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
++.+..+..+....+.++. ......|+.+|--.+...+. ....||+.|||||-.+.
T Consensus 737 ---~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 737 ---GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ---CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEccccccc
Confidence 4444444444433333332 23345677777333322222 23569999999999865
Q ss_pred c
Q 019359 188 D 188 (342)
Q Consensus 188 ~ 188 (342)
.
T Consensus 810 l 810 (1100)
T KOG1805|consen 810 L 810 (1100)
T ss_pred c
Confidence 4
No 191
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.12 E-value=7.2e-05 Score=72.96 Aligned_cols=126 Identities=21% Similarity=0.147 Sum_probs=76.3
Q ss_pred cCCCCCcHHHHhhHHHHhcCC-CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 45 LGFVEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~-~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.|+ .|++.|.+++..+..++ -+++.|+.|+|||++ +-.+...+... +.+++.++||-..+..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~-------G~~V~~~ApTGkAA~~L~e----- 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA-------GYEVRGAALSGIAAENLEG----- 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEecCcHHHHHHHhh-----
Confidence 344 79999999999988864 578999999999975 44444444332 6789999998766644322
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc-
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI- 202 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~- 202 (342)
..++.. .|..+++.-.......+...+++||||+-++.. ..+..++...
T Consensus 409 --~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~ 458 (988)
T PRK13889 409 --GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAA 458 (988)
T ss_pred --ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhh
Confidence 112211 122223221122223345678999999997633 3444454433
Q ss_pred CCCccEEEEEee
Q 019359 203 RPDRQTLYWSAT 214 (342)
Q Consensus 203 ~~~~~~i~~SaT 214 (342)
+...++|++--+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 345566655433
No 192
>PRK04296 thymidine kinase; Provisional
Probab=98.07 E-value=1.6e-05 Score=63.15 Aligned_cols=112 Identities=17% Similarity=0.206 Sum_probs=56.2
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
.-.++.||+|+|||..++ ..+.++... +.+++++-|...-. .....+....++...
T Consensus 3 ~i~litG~~GsGKTT~~l-~~~~~~~~~-------g~~v~i~k~~~d~~----~~~~~i~~~lg~~~~------------ 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELL-QRAYNYEER-------GMKVLVFKPAIDDR----YGEGKVVSRIGLSRE------------ 58 (190)
T ss_pred EEEEEECCCCCHHHHHHH-HHHHHHHHc-------CCeEEEEecccccc----ccCCcEecCCCCccc------------
Confidence 346889999999997544 344444332 56788876621110 000111111121110
Q ss_pred HhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEee
Q 019359 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (342)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 214 (342)
.+.+...+.+++.+.. .-..+++||+||+|.+. ...+..+.+.+.+....+.+|+-
T Consensus 59 -------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 -------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0123444555555443 22458999999998641 23345555553333444555544
No 193
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=98.04 E-value=0.00014 Score=71.42 Aligned_cols=136 Identities=21% Similarity=0.122 Sum_probs=80.0
Q ss_pred CHHHHHHHHHcCCCCCcHHHHhhHHHHhc-CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHH
Q 019359 35 PDYCLEVIAKLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (342)
Q Consensus 35 ~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~-~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~ 113 (342)
++.........++ .|++.|.+++..+.. ++-.++.|+.|+|||.+ +-.+...+... +.+++.++|+-.-+
T Consensus 368 ~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~-------G~~V~g~ApTgkAA 438 (1102)
T PRK13826 368 REAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA-------GYRVVGGALAGKAA 438 (1102)
T ss_pred CHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEcCcHHHH
Confidence 3333333333344 799999999998754 45688999999999975 44444444432 67899999987666
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChH
Q 019359 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEP 193 (342)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~ 193 (342)
..+.+. .|+... |..+++-........+..-+++||||+.++. ..
T Consensus 439 ~~L~e~-------~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~ 483 (1102)
T PRK13826 439 EGLEKE-------AGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SR 483 (1102)
T ss_pred HHHHHh-------hCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCC----HH
Confidence 554322 222221 2222211111112234567899999999763 33
Q ss_pred HHHHHHhhcC-CCccEEEEEee
Q 019359 194 QIRKIVTQIR-PDRQTLYWSAT 214 (342)
Q Consensus 194 ~~~~~~~~~~-~~~~~i~~SaT 214 (342)
.+..++.... ...+++++.-+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 4445555543 45566655433
No 194
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.03 E-value=3.6e-05 Score=67.73 Aligned_cols=75 Identities=17% Similarity=0.031 Sum_probs=48.3
Q ss_pred HcCCCCCcHHHHhhHHHHh----cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 019359 44 KLGFVEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~----~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~ 119 (342)
-+.+...+|.|..-...+. .+.+.++.+|+|+|||.+.+..++++...-+. ...+.++-.-|..-.+-...+
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHH
Confidence 3567788899988766554 35789999999999998766666665554432 134556655554444444444
Q ss_pred HHH
Q 019359 120 ALK 122 (342)
Q Consensus 120 ~~~ 122 (342)
++.
T Consensus 87 l~~ 89 (755)
T KOG1131|consen 87 LKR 89 (755)
T ss_pred HHH
Confidence 433
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.02 E-value=1.6e-05 Score=68.72 Aligned_cols=123 Identities=20% Similarity=0.096 Sum_probs=74.8
Q ss_pred CcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCe
Q 019359 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGI 129 (342)
Q Consensus 50 l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~ 129 (342)
|++.|.+++.. ..++++|.|+.|||||.+.+..+...+..... ...++|++++|+..+..+.+.+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~----~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV----PPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS----TGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccC----ChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57889999987 77889999999999999876666665554421 2457999999999999999888874332210
Q ss_pred EEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc-CC-CCccEEEEeccc
Q 019359 130 RSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NL-RRVTYLVLDEAD 184 (342)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~-~~~~~iIvDE~h 184 (342)
. ................+.|+|.+++...+-.... .. -.-++-+.|+..
T Consensus 75 ~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 E------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp C------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 0000001111112356889999888654333221 11 123456777766
No 196
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=98.01 E-value=0.0011 Score=69.98 Aligned_cols=236 Identities=11% Similarity=0.140 Sum_probs=125.2
Q ss_pred CCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC
Q 019359 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~ 126 (342)
.+.+.|.+++..++.. +-.++.|+.|+|||.+ +-.+...+.. .|.+|+.++|+-.-+.++.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~-------~G~~V~~lAPTgrAA~~L~e~~g~---- 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE-------QGYEIQIITAGSLSAQELRQKIPR---- 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHhcc----
Confidence 6889999999988765 5688999999999975 4444444433 277899999998877666554321
Q ss_pred CCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc-CCC
Q 019359 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPD 205 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~ 205 (342)
.... .......+..+ ....|...++ ....++..-+++||||+.++. ...+..++... +.+
T Consensus 497 ---~A~T------i~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 497 ---LAST------FITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred ---hhhh------HHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 1000 00111111100 1112222222 122234567899999999863 33455555443 456
Q ss_pred ccEEEEEeec-------CchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcC-CCcEEE
Q 019359 206 RQTLYWSATW-------PREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMD-GSRILI 277 (342)
Q Consensus 206 ~~~i~~SaT~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~lv 277 (342)
.++|++.-+- ...+..+... +-+.. ...... .....+ .+...........+.+.+..... ..+++|
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~--gv~t~-~l~~i~-rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tli 631 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEG--GVTTY-AWVDTK-QQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQV 631 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHC--CCcEE-Eeeccc-ccCcce--eeeccCchHHHHHHHHHHHhcccccCceEE
Confidence 7888775541 1222222221 11211 111110 001111 12222334445556666655543 446999
Q ss_pred EeCCchhHHHHHHHHH----hCCC------CcEeecC-CCCHHHHHHHHHHHhcCC
Q 019359 278 FTETKKGCDQVTRQLR----MDGW------PALSIHG-DKNQSERDWVLAEFRSGR 322 (342)
Q Consensus 278 f~~~~~~~~~l~~~L~----~~~~------~~~~~~~-~~~~~~r~~~~~~f~~~~ 322 (342)
+..+.++...|..+.+ ..|. ....+.. .++..++.. ...|+.|.
T Consensus 632 v~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~-~~~Yr~Gd 686 (1960)
T TIGR02760 632 LATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN-AAHYKQGM 686 (1960)
T ss_pred EcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh-HhhcCCCC
Confidence 9999888887776654 3332 2223322 456666653 36666654
No 197
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.01 E-value=8.1e-05 Score=69.62 Aligned_cols=270 Identities=16% Similarity=0.160 Sum_probs=142.9
Q ss_pred HHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-----hcCCCC
Q 019359 54 QAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-----FGSRAG 128 (342)
Q Consensus 54 Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~-----~~~~~~ 128 (342)
-..++..+..++-+++.+.||+|||.-+.--++..+.++.. +...-+.+--|++..+..+.+.+-+ .+...+
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~er~e~~g~tvg 459 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVANERGEEVGETCG 459 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHHhhHHhhccccc
Confidence 34455556667778999999999998877667777766532 1234456666777666666554432 222222
Q ss_pred eEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc---CCC
Q 019359 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI---RPD 205 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~---~~~ 205 (342)
..+.....-... ..-+.+||.+-+++..+.... .+.++|+||.|...-. ...+..++..+ -..
T Consensus 460 y~vRf~Sa~prp---------yg~i~fctvgvllr~~e~glr---g~sh~i~deiherdv~--~dfll~~lr~m~~ty~d 525 (1282)
T KOG0921|consen 460 YNVRFDSATPRP---------YGSIMFCTVGVLLRMMENGLR---GISHVIIDEIHERDVD--TDFVLIVLREMISTYRD 525 (1282)
T ss_pred cccccccccccc---------ccceeeeccchhhhhhhhccc---ccccccchhhhhhccc--hHHHHHHHHhhhccchh
Confidence 222111111000 135788999999998877543 4788999999974221 12222222111 123
Q ss_pred ccEEEEEeecCchH--------------------HHHHHHhcCCCeEEE-eccc---------cccc-ccccceEEE---
Q 019359 206 RQTLYWSATWPREV--------------------ETLARQFLRNPYKVI-IGSL---------ELKA-NQSINQVVE--- 251 (342)
Q Consensus 206 ~~~i~~SaT~~~~~--------------------~~~~~~~~~~~~~~~-~~~~---------~~~~-~~~~~~~~~--- 251 (342)
.++++||||+..+. ..+....+..+.... ...+ +... .........
T Consensus 526 l~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~ 605 (1282)
T KOG0921|consen 526 LRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILC 605 (1282)
T ss_pred hhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccccc
Confidence 44555566543321 111111111111000 0000 0000 000000000
Q ss_pred -------------EechhhHHHHHHHHHHhhc----CCCcEEEEeCCchhHHHHHHHHHhC-------CCCcEeecCCCC
Q 019359 252 -------------VVTEAEKYNRLIKLLKEVM----DGSRILIFTETKKGCDQVTRQLRMD-------GWPALSIHGDKN 307 (342)
Q Consensus 252 -------------~~~~~~~~~~l~~~l~~~~----~~~~~lvf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~ 307 (342)
...+....-.+.+.+.... -.+-++||.+-=...-.+..+|... ...+.-.|....
T Consensus 606 dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~ 685 (1282)
T KOG0921|consen 606 DPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLT 685 (1282)
T ss_pred ChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcc
Confidence 0001111112222222221 2567889988888777777777643 245666788777
Q ss_pred HHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 308 QSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 308 ~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
..+...+.+....|..++|+.|.+++.-+.+.+
T Consensus 686 ~~eqrkvf~~~p~gv~kii~stniaetsiTidd 718 (1282)
T KOG0921|consen 686 SQEQRKVFEPVPEGVTKIILSTNIAETSITIDD 718 (1282)
T ss_pred cHhhhhccCcccccccccccccceeeEeeeecc
Confidence 777777777777889999999998887776655
No 198
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.98 E-value=0.00027 Score=61.22 Aligned_cols=132 Identities=21% Similarity=0.272 Sum_probs=81.1
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
++.+.+.||||.|||.+.+-.+........ .....||-+.+.-... .++++.+++-.++++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-----~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-----KKKVAIITTDTYRIGA--VEQLKTYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-----CcceEEEEeccchhhH--HHHHHHHHHHhCCce------------
Confidence 667889999999999986655555442222 1445677666655543 356666665556554
Q ss_pred HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhh-cCCChHHHHHHHhhcCCCccEEEEEeecC-chHHH
Q 019359 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML-DMGFEPQIRKIVTQIRPDRQTLYWSATWP-REVET 221 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SaT~~-~~~~~ 221 (342)
.++-+|.-|...+.. +..+|+|.||=+-+-. +......+..+.....+....+.+|||.. .++..
T Consensus 264 ---------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 264 ---------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 355566656555443 4567999999887632 22234455555555555667788999974 34455
Q ss_pred HHHHhc
Q 019359 222 LARQFL 227 (342)
Q Consensus 222 ~~~~~~ 227 (342)
.+..|-
T Consensus 331 i~~~f~ 336 (407)
T COG1419 331 IIKQFS 336 (407)
T ss_pred HHHHhc
Confidence 555443
No 199
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.98 E-value=2.8e-05 Score=72.32 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=73.9
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHH-------HHH-HHhcCCCCeEEEEEec
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ-------EEA-LKFGSRAGIRSTCIYG 136 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~-------~~~-~~~~~~~~~~~~~~~~ 136 (342)
-++=+.|.||+|||.+|+-.+.+.=..- +-.+.+|+||+.++-.-.. +.| +.......++.....
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~Y------G~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~- 147 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKY------GLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD- 147 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHh------CceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec-
Confidence 3677999999999999877654432111 1346899999999865422 222 222222223332221
Q ss_pred CCcchhhHHhhcCCCcEEEeChHHHHHH------HhccccC--------------CC-CccEEEEeccchhhcCCChHHH
Q 019359 137 GAPKGPQIRDLRRGVEIVIATPGRLIDM------LEAQHTN--------------LR-RVTYLVLDEADRMLDMGFEPQI 195 (342)
Q Consensus 137 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~------~~~~~~~--------------~~-~~~~iIvDE~h~~~~~~~~~~~ 195 (342)
.......-.....+.+++.+.+.+..- +.+.... +. ---++|+||-|++... ...+
T Consensus 148 -~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~ 224 (985)
T COG3587 148 -EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTY 224 (985)
T ss_pred -hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHH
Confidence 111111112223456777666554332 1111110 01 1137899999998653 2233
Q ss_pred HHHHhhcCCCccEEEEEeecCchH
Q 019359 196 RKIVTQIRPDRQTLYWSATWPREV 219 (342)
Q Consensus 196 ~~~~~~~~~~~~~i~~SaT~~~~~ 219 (342)
..+.. + .+.-++-++||+++..
T Consensus 225 ~~i~~-l-~pl~ilRfgATfkd~y 246 (985)
T COG3587 225 GAIKQ-L-NPLLILRFGATFKDEY 246 (985)
T ss_pred HHHHh-h-CceEEEEecccchhhh
Confidence 33322 2 2345667899976654
No 200
>PRK06526 transposase; Provisional
Probab=97.94 E-value=2.9e-05 Score=64.35 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=21.6
Q ss_pred HHhcCCCEEEEcCCCCchhhHhHHHHHHh
Q 019359 60 MALKGRDLIGIAETGSGKTLSYLLPAFVH 88 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~~~~~~~~~ 88 (342)
.+..++++++.||+|+|||..+...+...
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34467899999999999998755444333
No 201
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=0.00042 Score=60.86 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=67.5
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEE-cCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL-APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil-~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
+.+++.||||+|||.+....+......... ++.++.++ +.+.-.+. ..+++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~----~g~~V~lit~Dt~R~aa--~eQL~~~a~~lgvpv~~---------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD----KSLNIKIITIDNYRIGA--KKQIQTYGDIMGIPVKA---------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc----CCCeEEEEeccCccHHH--HHHHHHHhhcCCcceEe----------
Confidence 458899999999998755443322211100 13444444 33321111 12355555555554421
Q ss_pred HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC-ChHHHHHHHhhcCCC-ccEEEEEeecCc-hHH
Q 019359 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPD-RQTLYWSATWPR-EVE 220 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~-~~~i~~SaT~~~-~~~ 220 (342)
+-+++.+...+.. ...+++|++|++.+..... ....+..++...... ...+.+|||... ++.
T Consensus 239 -----------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 239 -----------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred -----------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 1233344443332 3458999999999764221 123344444444333 467889999753 334
Q ss_pred HHHHHh
Q 019359 221 TLARQF 226 (342)
Q Consensus 221 ~~~~~~ 226 (342)
..+..+
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 444444
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.88 E-value=6.9e-05 Score=55.60 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=25.3
Q ss_pred cEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeec
Q 019359 176 TYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (342)
Q Consensus 176 ~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 215 (342)
.++|+||+|++. ....+..+....+...-.+.+++++
T Consensus 89 ~~lviDe~~~l~---~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF---SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH---THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC---CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999964 1555555555555555667777775
No 203
>PRK08181 transposase; Validated
Probab=97.87 E-value=0.00022 Score=59.47 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 019359 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~ 116 (342)
.+..++++++.||+|+|||..+...+...+.. +.+++++ +...|..+.
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--------g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIEN--------GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHHHc--------CCceeee-eHHHHHHHH
Confidence 34467899999999999998644433222222 4556665 444554443
No 204
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.84 E-value=8.5e-05 Score=59.06 Aligned_cols=122 Identities=19% Similarity=0.173 Sum_probs=64.9
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc-CcH--HHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA-PTR--ELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~-p~~--~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
+++.||||+|||.+..-.+...... +.++.+++ .+. .-.+ +++.++...++.+............
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--------~~~v~lis~D~~R~ga~e----QL~~~a~~l~vp~~~~~~~~~~~~~ 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--------GKKVALISADTYRIGAVE----QLKTYAEILGVPFYVARTESDPAEI 71 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEEEESTSSTHHHH----HHHHHHHHHTEEEEESSTTSCHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--------cccceeecCCCCCccHHH----HHHHHHHHhccccchhhcchhhHHH
Confidence 6789999999998855544433333 33344444 322 3333 3444444456665443222211111
Q ss_pred HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchH
Q 019359 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREV 219 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 219 (342)
+.+.++.. ....+|+|+||-+-+... ......+..+.....+....+.+|||.....
T Consensus 72 -----------------~~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 72 -----------------AREALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp -----------------HHHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred -----------------HHHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 11222211 113478999999975422 2234556666666667778889999986554
No 205
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.78 E-value=9.9e-05 Score=60.97 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=30.1
Q ss_pred CCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeec
Q 019359 171 NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (342)
Q Consensus 171 ~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 215 (342)
+.+.+.++|+||||.|.... ...+++.++......+.++++.-+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 34568999999999986543 445666666666666666666553
No 206
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.77 E-value=4.6e-05 Score=59.12 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhCCC--CcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec--ccccCCCCCC
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMDGW--PALSIHGDKNQSERDWVLAEFRSGRSPIMTATD--VAARGLGRIT 340 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~--~~~~Gidip~ 340 (342)
+++++||++|.+.++.+.+.+++... ...++.. +..++..+++.|.+++-.||+++. .+.+|||+|+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 58899999999999999999986531 1223333 245789999999999999999998 9999999986
No 207
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.73 E-value=0.00014 Score=70.61 Aligned_cols=153 Identities=18% Similarity=0.112 Sum_probs=92.2
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhc----------CCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEE
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSA----------QPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTC 133 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~----------~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 133 (342)
|.++++.-.+|.|||..-+...+...-. ....+....+-.||++|. ++..||.+++...+... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 4667888999999998755443332211 011111113567999995 56689999999987664 66666
Q ss_pred EecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc--------------C-------CCCccEEEEeccchhhcCCCh
Q 019359 134 IYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--------------N-------LRRVTYLVLDEADRMLDMGFE 192 (342)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--------------~-------~~~~~~iIvDE~h~~~~~~~~ 192 (342)
..|-........--...+|||+||++.|..-+-.... . +..+ -|++|||+.+-. ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wW-RIclDEaQMves--ss 528 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWW-RICLDEAQMVES--SS 528 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHH-HHhhhHHHhhcc--hH
Confidence 5554322111111123589999999988654433211 1 1112 389999997644 34
Q ss_pred HHHHHHHhhcCCCccEEEEEeecCchHHHH
Q 019359 193 PQIRKIVTQIRPDRQTLYWSATWPREVETL 222 (342)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 222 (342)
.....+...++ .....++|+||-..+..+
T Consensus 529 S~~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 529 SAAAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 45555555554 556789999975544443
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=97.73 E-value=0.00058 Score=58.85 Aligned_cols=130 Identities=23% Similarity=0.271 Sum_probs=70.4
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc---HHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT---RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
-+++.|++|+|||.+....+ ..+... +.+++++..- ..-..|+...... .++.+.....+....
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~~-------g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~dp~- 208 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKKN-------GFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGADPA- 208 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHHc-------CCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCCCHH-
Confidence 47789999999998644333 333332 4556665532 3445565555554 344443211111100
Q ss_pred hHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHH
Q 019359 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVET 221 (342)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 221 (342)
..+.+.+.... ....++|++|.+.++.. ......+..+.....++..++.++|+...+...
T Consensus 209 ----------------~v~~~ai~~~~--~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~ 270 (336)
T PRK14974 209 ----------------AVAYDAIEHAK--ARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE 270 (336)
T ss_pred ----------------HHHHHHHHHHH--hCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH
Confidence 00112222111 13478999999998642 223455566666666777788889987655444
Q ss_pred HHHHh
Q 019359 222 LARQF 226 (342)
Q Consensus 222 ~~~~~ 226 (342)
.+..+
T Consensus 271 ~a~~f 275 (336)
T PRK14974 271 QAREF 275 (336)
T ss_pred HHHHH
Confidence 44433
No 209
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.64 E-value=0.00033 Score=65.69 Aligned_cols=139 Identities=22% Similarity=0.174 Sum_probs=84.4
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCC-ccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPR-LVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~-~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
...++...+|.|||...+..++..-...+. .......-.|++||.. +..||..++.+......+.+...+| ... .
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s-~~~qW~~elek~~~~~~l~v~v~~g-r~k--d 228 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTS-LLTQWKTELEKVTEEDKLSIYVYHG-RTK--D 228 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchH-HHHHHHHHHhccCCccceEEEEecc-ccc--c
Confidence 468899999999998765555443333220 0001245678888864 4578988886666666677777777 111 1
Q ss_pred HHhhcCCCcEEEeChHHHHH-HHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecC
Q 019359 144 IRDLRRGVEIVIATPGRLID-MLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP 216 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~-~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 216 (342)
... ..+++|+++||+.+.. .+.. -.+-.+|+||+|.+.+.... .......+ .......+|+|+.
T Consensus 229 ~~e-l~~~dVVltTy~il~~~~l~~-----i~w~Riildea~~ikn~~tq--~~~a~~~L-~a~~RWcLtgtPi 293 (674)
T KOG1001|consen 229 KSE-LNSYDVVLTTYDILKNSPLVK-----IKWLRIVLDEAHTIKNKDTQ--IFKAVCQL-DAKYRWCLTGTPI 293 (674)
T ss_pred cch-hcCCceEEeeHHHhhcccccc-----eeEEEEEeccccccCCcchH--hhhhheee-ccceeeeecCChh
Confidence 111 2347899999987763 1111 23557999999998765432 22222222 2345567888864
No 210
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.64 E-value=0.00058 Score=51.47 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57899999999999974
No 211
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.61 E-value=0.00019 Score=53.80 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=26.0
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~ 113 (342)
++.+++.||+|+|||..+.. ++..+... +..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~-------~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP-------GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC-------CCCEEEECCEEccc
Confidence 46789999999999975332 33332221 12467777765543
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0018 Score=56.43 Aligned_cols=128 Identities=19% Similarity=0.251 Sum_probs=66.2
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC-cH--HHHHHHHHHHHHhcCCCCeEEEEEecCCcch
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-TR--ELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p-~~--~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
+.+++.||+|+|||.+....+. .+... +.++.++.. +. ..+.||..... ..++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~~-------GkkVglI~aDt~RiaAvEQLk~yae----~lgipv~--------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHGK-------KKTVGFITTDHSRIGTVQQLQDYVK----TIGFEVI--------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHHc-------CCcEEEEecCCcchHHHHHHHHHhh----hcCCcEE---------
Confidence 4678999999999987554443 33221 445554443 22 34444443332 2333322
Q ss_pred hhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcC-CChHHHHHHHhhcCCCccEEEEEeecC-chH
Q 019359 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWP-REV 219 (342)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~-~~~ 219 (342)
...++..+.+.+..... -..+|+|+||-+-+.... ..-..+..++....+....+.+|||.. .++
T Consensus 301 ------------v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 301 ------------AVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred ------------ecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 12345555554433211 124799999998764322 112333444444444445677888754 344
Q ss_pred HHHHHHh
Q 019359 220 ETLARQF 226 (342)
Q Consensus 220 ~~~~~~~ 226 (342)
...+..|
T Consensus 368 ~~i~~~F 374 (436)
T PRK11889 368 IEIITNF 374 (436)
T ss_pred HHHHHHh
Confidence 4554444
No 213
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.56 E-value=0.0016 Score=60.37 Aligned_cols=175 Identities=14% Similarity=0.084 Sum_probs=102.5
Q ss_pred cCCCCHHHHHHHHH---cCCCCCcHHHHhhHHHHhc--CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 31 EANFPDYCLEVIAK---LGFVEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 31 ~~~~~~~~~~~l~~---~~~~~l~~~Q~~~~~~~~~--~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
..-+-+.+.+.++- -|+..+++--.+.+....+ |-.+++.-.+|.|||+- ++....-+...- ..+.||+
T Consensus 244 ~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQ-VisF~diflRhT-----~AKtVL~ 317 (1387)
T KOG1016|consen 244 DIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQ-VISFSDIFLRHT-----KAKTVLV 317 (1387)
T ss_pred ceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeE-EeehhHHHhhcC-----ccceEEE
Confidence 34466667776654 3555677766777766654 34688888999999974 333333222211 2677999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCC---------CeEEEEEecCCcchhh----HHhhcCCCcEEEeChHHHHHHHhcc----
Q 019359 106 LAPTRELAVQIQEEALKFGSRA---------GIRSTCIYGGAPKGPQ----IRDLRRGVEIVIATPGRLIDMLEAQ---- 168 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~----~~~~~~~~~iiv~T~~~l~~~~~~~---- 168 (342)
++|-..| +.|..++..|.+.. .+.+..+.++...-.. +..+.....|+..-++.+.-+....
T Consensus 318 ivPiNTl-QNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~ 396 (1387)
T KOG1016|consen 318 IVPINTL-QNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKK 396 (1387)
T ss_pred EEehHHH-HHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhccccc
Confidence 9998887 57888888876542 2556666655433322 3444455677777776542221110
Q ss_pred --------c------------------------cCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeec
Q 019359 169 --------H------------------------TNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (342)
Q Consensus 169 --------~------------------------~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 215 (342)
. +.-...|++|+||-|++-+- ...+.-.++..... +.|.+|+=+
T Consensus 397 grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~--~A~iS~aLk~Irtr-RRiVLTGYP 472 (1387)
T KOG1016|consen 397 GRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNI--TAEISMALKAIRTR-RRIVLTGYP 472 (1387)
T ss_pred CCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccc--hHHHHHHHHHhhhc-eeEEEeccc
Confidence 0 00234689999999998654 22333334444433 445555543
No 214
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.56 E-value=0.00014 Score=63.92 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=41.9
Q ss_pred CCcHHHHhhHHHH------hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHH
Q 019359 49 EPTPIQAQGWPMA------LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (342)
Q Consensus 49 ~l~~~Q~~~~~~~------~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q 115 (342)
.|.+.|++++..+ ..+.++.+.|+.|+|||.. +-.+...+.. .+..+++++||-.-|..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l-~~~i~~~~~~-------~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL-IKAIIDYLRS-------RGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH-HHHHHHHhcc-------ccceEEEecchHHHHHh
Confidence 3678899998887 5678899999999999975 3333333332 25678899997655543
No 215
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00044 Score=60.28 Aligned_cols=131 Identities=20% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
++.+++.||||+|||++....+........ ..++.+++. ...-.--.+.++.|+...++.+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G------~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~~--------- 200 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG------ASKVALLTT-DSYRIGGHEQLRIFGKILGVPVHAV--------- 200 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEec-ccccccHHHHHHHHHHHcCCceEec---------
Confidence 467899999999999875544433332211 134544442 2221111233444433344443322
Q ss_pred HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC-ChHHHHHHHhhcCCCccEEEEEeecCchH-HH
Q 019359 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREV-ET 221 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-~~ 221 (342)
-++..+...+.. +.+.++++||.+-...... ....+..+.........++.+|||..... ..
T Consensus 201 ------------~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 201 ------------KDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred ------------CCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 222222222221 3457899999997532111 12222222222223445788899975433 33
Q ss_pred HHHHh
Q 019359 222 LARQF 226 (342)
Q Consensus 222 ~~~~~ 226 (342)
.+..|
T Consensus 265 vi~~f 269 (374)
T PRK14722 265 VVQAY 269 (374)
T ss_pred HHHHH
Confidence 44433
No 216
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.54 E-value=0.00044 Score=65.55 Aligned_cols=80 Identities=23% Similarity=0.163 Sum_probs=57.0
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCC
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~ 127 (342)
..|++.|++++.. ...+++|.|+.|||||.+.+..+...+..... ...++|+++.++..+..+.+.+.......
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~----~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQA----QPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC----CHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 4799999999864 44678999999999999865554444433211 14579999999999999998887654333
Q ss_pred CeEEEE
Q 019359 128 GIRSTC 133 (342)
Q Consensus 128 ~~~~~~ 133 (342)
++.+..
T Consensus 269 ~v~v~T 274 (684)
T PRK11054 269 DITART 274 (684)
T ss_pred CcEEEe
Confidence 444443
No 217
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.48 E-value=0.00021 Score=58.95 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=39.2
Q ss_pred cCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCC
Q 019359 20 HDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQP 93 (342)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~ 93 (342)
...|.+...|+++++|+.+.+... ....=+||.||||||||.+ +.+++.+++.+.
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAE------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHh------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 355788888888888876444221 1223388999999999987 777888887753
No 218
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.48 E-value=0.0028 Score=52.11 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=22.9
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEE
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil 106 (342)
..+++.|++|+|||..+.. +...+... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~~-------g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLLR-------GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHhc-------CCeEEEE
Confidence 4789999999999986443 44444332 4556666
No 219
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.44 E-value=0.00071 Score=65.24 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=55.7
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
..|++.|++++.. ...+++|.|++|||||.+.+.-+...+..... ...++|+++.|+..+..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v----~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENA----SPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC----CHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4689999999875 45679999999999999866655555443211 145799999999999999999988654
No 220
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.42 E-value=0.00036 Score=66.45 Aligned_cols=70 Identities=17% Similarity=0.068 Sum_probs=54.1
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|++.|++++.. ...+++|.|++|||||.+.+..+...+..... ...++|+++.|+..+.++.+.+....
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v----~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC----CHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478899999875 45779999999999999866666555543211 14579999999999999999888754
No 221
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.42 E-value=0.00073 Score=65.13 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=59.8
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC-
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR- 126 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~- 126 (342)
..|++.|++++.. ...+++|.|++|||||.+.+.-+...+..... ...++|+++.|+..+.++.+.+.+....
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v----~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~ 81 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENA----SPYSIMAVTFTNKAAAEMRHRIEQLLGTS 81 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC----ChhHeEeeeccHHHHHHHHHHHHHHhccC
Confidence 3689999999974 45689999999999999866655554432211 1457999999999999999999886542
Q ss_pred -CCeEEEEEec
Q 019359 127 -AGIRSTCIYG 136 (342)
Q Consensus 127 -~~~~~~~~~~ 136 (342)
.++.+..+|+
T Consensus 82 ~~~~~i~TfHs 92 (721)
T PRK11773 82 QGGMWVGTFHG 92 (721)
T ss_pred CCCCEEEcHHH
Confidence 2334444444
No 222
>PRK06921 hypothetical protein; Provisional
Probab=97.40 E-value=0.0022 Score=53.71 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=24.6
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p 108 (342)
+.++++.|++|+|||..+. ++...+.... +..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~~------g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRKK------GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhhc------CceEEEEEH
Confidence 5679999999999998543 3444443320 445666653
No 223
>PRK12377 putative replication protein; Provisional
Probab=97.40 E-value=0.0021 Score=53.04 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=27.7
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~ 118 (342)
.++++.||+|+|||..+.. +...+... +..++++ +...+..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~~~-------g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLLAK-------GRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc-------CCCeEEE-EHHHHHHHHHH
Confidence 6799999999999986443 44444432 4445544 44555554433
No 224
>PRK08116 hypothetical protein; Validated
Probab=97.39 E-value=0.0027 Score=53.24 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=26.3
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~ 116 (342)
..+++.|++|+|||..+. ++...+... +..++++ +...+...+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~~~-~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVIFV-NFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEE-EHHHHHHHH
Confidence 359999999999998644 455555432 3345554 444454433
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.0025 Score=57.11 Aligned_cols=130 Identities=21% Similarity=0.216 Sum_probs=64.1
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhh-hcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHV-SAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
++.+++.||+|+|||.+....+.... ... +.++.++.--..- .-..+.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-------g~~V~li~~D~~r-~~a~eqL~~~a~~~~vp~~---------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-------KKKVALITLDTYR-IGAVEQLKTYAKIMGIPVE---------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CCeEEEEECCccH-HHHHHHHHHHHHHhCCceE----------
Confidence 45688999999999987554433332 121 3445555432210 0011233333333333322
Q ss_pred hHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcC-CChHHHHHHHhh-cCCCccEEEEEeecCc-hH
Q 019359 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQ-IRPDRQTLYWSATWPR-EV 219 (342)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~-~~~~~~~i~~SaT~~~-~~ 219 (342)
.+.+++.+...+.. +..+|+|+||.+-..... .....+..++.. ..+....+.+|+|... ++
T Consensus 283 -----------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l 347 (424)
T PRK05703 283 -----------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDL 347 (424)
T ss_pred -----------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHH
Confidence 12233334444432 235899999998653221 122344444442 1233457788998754 44
Q ss_pred HHHHHHh
Q 019359 220 ETLARQF 226 (342)
Q Consensus 220 ~~~~~~~ 226 (342)
......+
T Consensus 348 ~~~~~~f 354 (424)
T PRK05703 348 KDIYKHF 354 (424)
T ss_pred HHHHHHh
Confidence 4444443
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.35 E-value=0.0034 Score=54.13 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=28.2
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~ 116 (342)
++++++.||+|+|||..+.. +...+... +..|+++. ...+..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~~-------g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLDR-------GKSVIYRT-ADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHHC-------CCeEEEEE-HHHHHHHH
Confidence 57899999999999986443 44444332 55666654 45554443
No 227
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.33 E-value=0.0021 Score=65.75 Aligned_cols=65 Identities=26% Similarity=0.274 Sum_probs=45.4
Q ss_pred CCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~ 117 (342)
.|++.|.+++..++.+ +-++++|..|+|||.+ +-.++..+.... ...+.+++.++|+-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~-l~~i~~~~~~l~---e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ-FRAVMSAVNMLP---ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH-HHHHHHHHHHHh---hccCceEEEEechHHHHHHHH
Confidence 7999999999998865 6789999999999975 322333222100 012567899999877776553
No 228
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.32 E-value=0.0041 Score=47.80 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=24.2
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHH
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~ 113 (342)
+++.||+|+|||..+.. +...... .+..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~-------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT-------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh-------cCCEEEEEECCcchH
Confidence 67899999999975433 3333222 155677776654443
No 229
>PTZ00293 thymidine kinase; Provisional
Probab=97.31 E-value=0.0026 Score=50.67 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=25.2
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~ 109 (342)
|.=-++.|||++|||.-.+-. +.+.... +.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~-i~~y~~a-------g~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRL-VKRFTYS-------EKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHH-HHHHHHc-------CCceEEEEec
Confidence 344678999999999753433 3333332 5678888885
No 230
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.28 E-value=0.00027 Score=54.59 Aligned_cols=124 Identities=22% Similarity=0.205 Sum_probs=51.8
Q ss_pred EEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhh
Q 019359 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDL 147 (342)
Q Consensus 68 l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
++.|+-|-|||.+ +-.++..+.... ..+++|.+|+..=+....+.+..-....+++...... ........
T Consensus 1 VltA~RGRGKSa~-lGl~~a~l~~~~------~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAA-LGLAAAALIQKG------KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHH-HHHCCCCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHH-HHHHHHHHHHhc------CceEEEecCCHHHHHHHHHHHHhhccccccccccccc---cccccccc
Confidence 4789999999965 333333333321 2479999999998887777665533333333200000 00000001
Q ss_pred cCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecC
Q 019359 148 RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP 216 (342)
Q Consensus 148 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 216 (342)
..+..+-+..|+.+...- ...|++|||||=.+ -.+.+..++... ..+++|.|..
T Consensus 71 ~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaI----p~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAI----PLPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred cccceEEEECCHHHHhCc-------CCCCEEEEechhcC----CHHHHHHHHhhC----CEEEEEeecc
Confidence 113456666665543321 23589999999976 344555554333 3567787764
No 231
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.0054 Score=47.69 Aligned_cols=89 Identities=26% Similarity=0.257 Sum_probs=52.5
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
=.++.+||++|||...+-.+ .+... .+.++++..|...- ..+...+.-+-|...
T Consensus 6 l~~i~gpM~SGKT~eLl~r~-~~~~~-------~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~----- 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRA-RRYKE-------AGMKVLVFKPAIDT-------------RYGVGKVSSRIGLSS----- 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHH-HHHHH-------cCCeEEEEeccccc-------------ccccceeeeccCCcc-----
Confidence 35789999999998633333 33332 27789999884221 112222222222222
Q ss_pred hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh
Q 019359 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (342)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (342)
.-++|-+...+...+........ ++++.||||+=+
T Consensus 60 -----~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~ 94 (201)
T COG1435 60 -----EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF 94 (201)
T ss_pred -----cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC
Confidence 23566677777777766443322 789999999953
No 232
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.26 E-value=3.2e-05 Score=71.64 Aligned_cols=77 Identities=26% Similarity=0.387 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcC---CCCEEEEecccc
Q 019359 258 KYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG---RSPIMTATDVAA 333 (342)
Q Consensus 258 ~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vlv~t~~~~ 333 (342)
+...|..++++... ++|+++|..-.+..+.+.+++...+ ....+.|......|..++..|+.- ....|++|.+.+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 34444555555433 7899999999999999999999888 888999999999999999999843 355899998877
Q ss_pred cC
Q 019359 334 RG 335 (342)
Q Consensus 334 ~G 335 (342)
.|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 65
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.0007 Score=56.23 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=35.2
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
+.++.++++.||+|+|||..+...+...+ .. |.++++ ++...++.++...+..
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-------g~sv~f-~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELL-KA-------GISVLF-ITAPDLLSKLKAAFDE 154 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-------CCeEEE-EEHHHHHHHHHHHHhc
Confidence 34678999999999999987555444333 32 455555 5667777766555543
No 234
>PRK08727 hypothetical protein; Validated
Probab=97.24 E-value=0.0022 Score=52.74 Aligned_cols=35 Identities=23% Similarity=0.110 Sum_probs=22.3
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 107 (342)
..+++.||+|+|||..+.. +...+... +.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~~-------~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQA-------GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc-------CCcEEEEe
Confidence 4589999999999975433 33333321 45567664
No 235
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.23 E-value=0.0041 Score=49.21 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=32.3
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
+++.||+|+|||..++-.+...+.. +.++++++.. +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999998654434443332 5668888664 4456666677665
No 236
>PRK05642 DNA replication initiation factor; Validated
Probab=97.22 E-value=0.0024 Score=52.51 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=26.5
Q ss_pred CccEEEEeccchhhcC-CChHHHHHHHhhcCCCccEEEEEeecC
Q 019359 174 RVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWP 216 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~ 216 (342)
..+++++|++|.+... .+...+..+++.+......+++|++.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 4689999999976433 234556666655544444566666643
No 237
>PHA02533 17 large terminase protein; Provisional
Probab=97.22 E-value=0.0042 Score=57.23 Aligned_cols=69 Identities=16% Similarity=0.025 Sum_probs=52.3
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.|.|+|.+.+..+..++-.++..+-..|||.+....++..+...+ +..+++++|+..-+....+.++.+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~------~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK------DKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHHH
Confidence 688999999988766666788899999999876644443333222 568999999999988887777654
No 238
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.21 E-value=0.0041 Score=64.44 Aligned_cols=64 Identities=27% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 019359 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~ 116 (342)
.+++.|.+++..++.+ +-+++.|..|+|||.+ +-.+...+.... ...+.+++.++||-.-+.++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~---~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP---ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhh---cccCceEEEECCcHHHHHHH
Confidence 7899999999998875 5688999999999975 333433332110 01256789999997776654
No 239
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.19 E-value=0.0017 Score=52.73 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=57.8
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
.+.+.||+|+|||.. +.++...+.... .+.+++++.. ..........++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~-----~~~~v~y~~~-~~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH-----PGKRVVYLSA-EEFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC-----TTS-EEEEEH-HHHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc-----ccccceeecH-HHHHHHHHHHHHc-----------------------
Confidence 488999999999984 444555444321 1556777654 3333333333322
Q ss_pred hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC-ChHHHHHHHhhc-CCCccEEEEEeecCchH
Q 019359 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQI-RPDRQTLYWSATWPREV 219 (342)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~ 219 (342)
...+.+.+. +...|++++|.+|.+.... +...+..+++.+ ..+.++|+.|..+|..+
T Consensus 86 ----------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ----------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ----------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ----------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 011122222 2358999999999875432 334444555444 33456666665655543
No 240
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=97.19 E-value=0.0098 Score=55.34 Aligned_cols=57 Identities=11% Similarity=-0.001 Sum_probs=40.9
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
.+.+-.++.+|-|.|||.+..+.+...+... +.+|+|.+|...-+.++.+.++....
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f~-------Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISFL-------EIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHhc-------CCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3456678899999999987554433333211 56799999999998888877766554
No 241
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.19 E-value=0.0013 Score=66.99 Aligned_cols=123 Identities=19% Similarity=0.121 Sum_probs=77.7
Q ss_pred CcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCe
Q 019359 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGI 129 (342)
Q Consensus 50 l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~ 129 (342)
+++.|++++. ..+++++|.|+.|||||.+.+--++..+..... -.++|++|-|+..+..+.+.+.+-.... +
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~-----~~~il~~tFt~~aa~e~~~ri~~~l~~~-~ 73 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVD-----IDRLLVVTFTNAAAREMKERIEEALQKA-L 73 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-----HhhEEEEeccHHHHHHHHHHHHHHHHHH-H
Confidence 5788999997 378899999999999999876666666544311 2469999999999999888877632110 0
Q ss_pred EEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccC-CC-CccEEEEeccch
Q 019359 130 RSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN-LR-RVTYLVLDEADR 185 (342)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-~~-~~~~iIvDE~h~ 185 (342)
. .........+.+..-...-|+|.+++...+.+.... +. ..++=|.||...
T Consensus 74 ~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 011111111222223467899999987654443321 11 124456888775
No 242
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.14 E-value=0.0013 Score=63.13 Aligned_cols=69 Identities=17% Similarity=0.071 Sum_probs=53.2
Q ss_pred CcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 50 l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
|++.|.+++.. ...+++|.|+.|||||.+.+..+...+..... ...++|+++.++..+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~----~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY----KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998865 45789999999999999866666555543211 14579999999999999999887654
No 243
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.13 E-value=0.0057 Score=55.66 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=26.5
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~ 116 (342)
..+++.||+|+|||..+. ++...+.... .+.+++++.. ..+..++
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~-----~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKN-----PNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhC-----CCCeEEEEEH-HHHHHHH
Confidence 458899999999998533 3444443321 1445666644 4444443
No 244
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.11 E-value=0.007 Score=57.99 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=15.4
Q ss_pred EEEcCCCCchhhHhHHHHHHhh
Q 019359 68 IGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 68 l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
+|.|+||+|||.+.-. ++..+
T Consensus 785 YIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 785 YISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred EEECCCCCCHHHHHHH-HHHHH
Confidence 5999999999987433 44444
No 245
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.0025 Score=57.26 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
..++.||.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999986443
No 246
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.014 Score=53.01 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=32.3
Q ss_pred cccCCCCHHHHHHHHH-cCC----CCCcHHHHhhHHH---------HhcCCCEEEEcCCCCchhhHhHHHH
Q 019359 29 FQEANFPDYCLEVIAK-LGF----VEPTPIQAQGWPM---------ALKGRDLIGIAETGSGKTLSYLLPA 85 (342)
Q Consensus 29 ~~~~~~~~~~~~~l~~-~~~----~~l~~~Q~~~~~~---------~~~~~~~l~~~~tG~GKT~~~~~~~ 85 (342)
+...|+++.+.+.|-. ..- ...+..-...+.. +..++.+.+.||+|+|||.+....+
T Consensus 301 L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 301 MDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred HHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHH
Confidence 5556888888777643 211 1111111111111 2245678899999999998754433
No 247
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.09 E-value=0.0014 Score=63.44 Aligned_cols=88 Identities=23% Similarity=0.381 Sum_probs=76.9
Q ss_pred echhhHHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCC--CCEEEEe
Q 019359 253 VTEAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR--SPIMTAT 329 (342)
Q Consensus 253 ~~~~~~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~t 329 (342)
..+..|++.|+-++++... ++++|||+.-.+..+.+...|.-+|+...-+.|.+.-++|..++++|+.+. ...|++|
T Consensus 1256 qyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILST 1335 (1958)
T KOG0391|consen 1256 QYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILST 1335 (1958)
T ss_pred ecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEec
Confidence 3456788888888877654 889999999999999999999999999999999999999999999999876 3588999
Q ss_pred cccccCCCCCC
Q 019359 330 DVAARGLGRIT 340 (342)
Q Consensus 330 ~~~~~Gidip~ 340 (342)
...+.|||+-+
T Consensus 1336 rSggvGiNLtg 1346 (1958)
T KOG0391|consen 1336 RSGGVGINLTG 1346 (1958)
T ss_pred cCCcccccccc
Confidence 99999999754
No 248
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.08 E-value=0.0036 Score=56.66 Aligned_cols=49 Identities=20% Similarity=0.103 Sum_probs=29.1
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
..+++.|++|+|||..+ -++...+.... .+.+++++.+ ..+.......+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~-----~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF-----SDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHH
Confidence 45889999999999753 34444443321 1556777655 44544444333
No 249
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0091 Score=54.86 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=23.1
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
.+++++|+||+|.+.... .+.+.+.++..+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 457899999999875432 233344444444444455444
No 250
>PRK06893 DNA replication initiation factor; Validated
Probab=97.05 E-value=0.0023 Score=52.42 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=25.9
Q ss_pred CCccEEEEeccchhhcC-CChHHHHHHHhhcC-CCccEEEEEeecC
Q 019359 173 RRVTYLVLDEADRMLDM-GFEPQIRKIVTQIR-PDRQTLYWSATWP 216 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~-~~~~~i~~SaT~~ 216 (342)
...+++++||+|.+... .+...+..++.... ...+++++|++.+
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 34789999999987532 23334444444432 3445667777643
No 251
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.04 E-value=0.0074 Score=54.19 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=23.9
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p 108 (342)
..+++.||+|+|||..+ .++...+.... .+.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~-----~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENN-----PNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCcEEEEEH
Confidence 35789999999999854 33444443321 1456777643
No 252
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.04 E-value=0.014 Score=43.11 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=12.4
Q ss_pred EEEEcCCCCchhhH
Q 019359 67 LIGIAETGSGKTLS 80 (342)
Q Consensus 67 ~l~~~~tG~GKT~~ 80 (342)
+++.||+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58899999999975
No 253
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=97.03 E-value=0.0036 Score=60.59 Aligned_cols=72 Identities=19% Similarity=0.128 Sum_probs=55.2
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
..|++.|++++.. ...+++|.|+.|||||.+.+.-+...+..... ...++|+++-|+..+..+.+.+.+++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i----~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV----APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC----CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3689999999975 45779999999999999866655555543211 135799999999999999998887643
No 254
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.02 E-value=0.0016 Score=60.69 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=91.1
Q ss_pred CCcHHHHhhHHHHhc--------CC--CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALK--------GR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~--------~~--~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~ 118 (342)
.+...|.+++-.... |+ .+|+-...|.||-.+..-.++...... .+++|++.-+..|--...+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG-------RKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG-------RKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc-------cceeEEEEeccccccchhh
Confidence 677888888765442 22 366666677776654333344433332 6689999999888766666
Q ss_pred HHHHhcCCCCeEEEEEec----CCcchhhHHhhcCCCcEEEeChHHHHHHHhccccC------------C-CCccEEEEe
Q 019359 119 EALKFGSRAGIRSTCIYG----GAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN------------L-RRVTYLVLD 181 (342)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~------------~-~~~~~iIvD 181 (342)
.++.++.. ++.+..+.. ..+..+. .. ..-.|+++|+..|..--...... - ..-++||+|
T Consensus 337 DL~DigA~-~I~V~alnK~KYakIss~en-~n--~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 337 DLRDIGAT-GIAVHALNKFKYAKISSKEN-TN--TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred chhhcCCC-Cccceehhhccccccccccc-CC--ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 77766443 455443321 1111000 01 12469999987664322211000 0 112688999
Q ss_pred ccchhhcC---------CChHHHHHHHhhcCCCccEEEEEeecC
Q 019359 182 EADRMLDM---------GFEPQIRKIVTQIRPDRQTLYWSATWP 216 (342)
Q Consensus 182 E~h~~~~~---------~~~~~~~~~~~~~~~~~~~i~~SaT~~ 216 (342)
|||+.-+. ..+..+..+.+.++ +.++++-|||-.
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGA 455 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGA 455 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCC
Confidence 99975431 15567777777775 788999999943
No 255
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.02 E-value=0.0035 Score=51.62 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhhHhH
Q 019359 64 GRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~ 82 (342)
+..+++.||+|+|||..+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3578999999999998543
No 256
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.00 E-value=0.0058 Score=50.04 Aligned_cols=20 Identities=35% Similarity=0.275 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCCchhhHhH
Q 019359 63 KGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~ 82 (342)
.+.++++.||+|+|||..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999997643
No 257
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.99 E-value=0.0095 Score=53.41 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=28.2
Q ss_pred ccEEEEeccchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHH
Q 019359 175 VTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQ 225 (342)
Q Consensus 175 ~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 225 (342)
.++||+|.+-+... ...-..+..+.....++..++.++|+...+.......
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 47889998854321 1123344455555555666777777765544333333
No 258
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0063 Score=56.59 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=22.9
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEe
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 213 (342)
.++.++||||+|++.... .+.+.+.++.-+....+|+.|.
T Consensus 123 gr~KViIIDEah~Ls~~A-aNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHA-FNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCHHH-HHHHHHhhccCCCCceEEEEeC
Confidence 468899999999985432 2333333333334444454443
No 259
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.0095 Score=56.35 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=22.6
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
.+++++||||+|.+.... .+.+.+.++..+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 457899999999875433 233444444444444444333
No 260
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.97 E-value=0.0042 Score=56.33 Aligned_cols=87 Identities=23% Similarity=0.137 Sum_probs=59.2
Q ss_pred CHHHHHHHHHcCCCCCcH-------HHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc
Q 019359 35 PDYCLEVIAKLGFVEPTP-------IQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (342)
Q Consensus 35 ~~~~~~~l~~~~~~~l~~-------~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 107 (342)
.+.++..|+...-..++. .|-+++. ..++.-.+++|..|||||.+++--+...+......-. +.-|||+.
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~--~k~vlvl~ 267 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ--AKPVLVLG 267 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc--cCceEEEc
Confidence 445666788765555543 3555553 3456778999999999999987766666655543332 34499999
Q ss_pred CcHHHHHHHHHHHHHhc
Q 019359 108 PTRELAVQIQEEALKFG 124 (342)
Q Consensus 108 p~~~l~~q~~~~~~~~~ 124 (342)
|++.+..-..+.+-.++
T Consensus 268 PN~vFleYis~VLPeLG 284 (747)
T COG3973 268 PNRVFLEYISRVLPELG 284 (747)
T ss_pred CcHHHHHHHHHhchhhc
Confidence 99999877766665543
No 261
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.97 E-value=0.0044 Score=55.89 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=25.6
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~ 114 (342)
..+++.||+|+|||..+ -++...+... +.+++++.. ..+..
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~~-------~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRES-------GGKILYVRS-ELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCEEEeeH-HHHHH
Confidence 45899999999999753 3344444332 456777653 34433
No 262
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.0083 Score=56.29 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=21.7
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYW 211 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 211 (342)
..+.++||||+|++.... .+.+.+.++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 457899999999875433 33333444443333334433
No 263
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.0083 Score=51.87 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=27.2
Q ss_pred CCcHHHHhhHHHHhcC----CCEEEEcCCCCchhhHhHH
Q 019359 49 EPTPIQAQGWPMALKG----RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~----~~~l~~~~tG~GKT~~~~~ 83 (342)
.++|+|...+..+... +-.++.||.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 4589999999887654 3478999999999975443
No 264
>PRK09183 transposase/IS protein; Provisional
Probab=96.91 E-value=0.0035 Score=52.37 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=28.6
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHH
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~ 114 (342)
+..+.++++.||+|+|||..+...+...... +..++++. ...+..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~--------G~~v~~~~-~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA--------GIKVRFTT-AADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc--------CCeEEEEe-HHHHHH
Confidence 5567899999999999998655443332222 55676654 334433
No 265
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.87 E-value=0.0051 Score=56.99 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=56.1
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
.+++.|++|+|||.. +.++...+.... .+.+++++.. ..+..++...+.. .
T Consensus 316 pL~LyG~sGsGKTHL-L~AIa~~a~~~~-----~g~~V~Yita-eef~~el~~al~~---~------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHL-LHAIGHYARRLY-----PGTRVRYVSS-EEFTNEFINSIRD---G------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHH-HHHHHHHHHHhC-----CCCeEEEeeH-HHHHHHHHHHHHh---c-------------------
Confidence 488999999999985 333444443211 1456776644 4444443333221 0
Q ss_pred hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC-ChHHHHHHHhhc-CCCccEEEEEeecCch
Q 019359 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQI-RPDRQTLYWSATWPRE 218 (342)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SaT~~~~ 218 (342)
..+.+.+. +..+|+++||++|.+.... ....+..+++.+ ..+.++|+.|-..+..
T Consensus 367 -----------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 367 -----------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred -----------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 01112121 2347999999999875432 233444444443 3345666555444443
No 266
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.87 E-value=0.0065 Score=49.80 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCchhhHhH
Q 019359 63 KGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~ 82 (342)
.++.+++.||+|+|||..+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999997533
No 267
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.86 E-value=0.012 Score=51.46 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
...+++|+||+|.+... ....+...+...+...++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999986432 2334455555554455555443
No 268
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.84 E-value=0.0053 Score=51.49 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=30.2
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhc-CCCccC---CCCceEEEEcCcHHHHHHHHHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSA-QPRLVQ---GEGPIVLVLAPTRELAVQIQEEAL 121 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~-~~~~~~---~~~~~vlil~p~~~l~~q~~~~~~ 121 (342)
.+.++.|++|.|||.+. .++.. .+.... ..-+.+.+-+|...-...++..+-
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 58999999999999742 22221 111111 112566777777666555554443
No 269
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.82 E-value=0.0057 Score=52.95 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=24.7
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
..+++|+||+|.+........+..+++..+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 367999999998733223455566666665555555544
No 270
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.82 E-value=0.0074 Score=55.33 Aligned_cols=71 Identities=21% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHhhHHHHh-----cC----CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 52 PIQAQGWPMAL-----KG----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 52 ~~Q~~~~~~~~-----~~----~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
|+|.-++..+. .+ +.+++..|-|-|||......++..+...+. .+..+++.++++.-+......+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~----~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGE----PGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCc----cCceEEEEeCCHHHHHHHHHHHHH
Confidence 56777766554 12 458889999999998655554544433221 267899999999999999988887
Q ss_pred hcCC
Q 019359 123 FGSR 126 (342)
Q Consensus 123 ~~~~ 126 (342)
+...
T Consensus 77 ~i~~ 80 (477)
T PF03354_consen 77 MIEA 80 (477)
T ss_pred HHHh
Confidence 6544
No 271
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.82 E-value=0.0078 Score=53.89 Aligned_cols=136 Identities=13% Similarity=0.207 Sum_probs=75.1
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHH-HHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE-LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
-.++.|+.|||||.+.+..++..+.... .+.+++++-|+.. +...+...+.......++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 3578899999999987777776666541 1567899988877 55556666665544444431111111110 11
Q ss_pred HhhcC-CCcEEEeCh-HHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcC--CCccEEEEEeecCch
Q 019359 145 RDLRR-GVEIVIATP-GRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR--PDRQTLYWSATWPRE 218 (342)
Q Consensus 145 ~~~~~-~~~iiv~T~-~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~~SaT~~~~ 218 (342)
. +.. +..|++... +.-.+. . ....++++.+|||..+... .+..+...+. .....+++|.+|...
T Consensus 76 ~-~~~~g~~i~f~g~~d~~~~i-k----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 76 K-ILNTGKKFIFKGLNDKPNKL-K----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred E-ecCCCeEEEeecccCChhHh-h----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 1 112 345555443 222111 1 1233689999999987433 3444433332 122247888887653
No 272
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.012 Score=53.91 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.7
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+..++.||.|+|||.++-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999986543
No 273
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.009 Score=54.26 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+..|+.||.|+|||.++.+
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 4689999999999986544
No 274
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.80 E-value=0.034 Score=46.52 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC-c--HHHHHHHHHHHHHhcCCCCeEEEEEecCCcc
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-T--RELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p-~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (342)
+..+.+.+++|+|||..+...+.. +... +.++.++.- . ...+.||...... .++.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~-l~~~-------~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~------- 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ-FHGK-------KKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA------- 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH-HHHc-------CCeEEEEecCCCCHHHHHHHHHHhhh----cCceEEe-------
Confidence 467899999999999865543332 2221 334444433 2 2455565544433 2333221
Q ss_pred hhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcC-CChHHHHHHHhhcCCCccEEEEEeecCc-h
Q 019359 141 GPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPR-E 218 (342)
Q Consensus 141 ~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~ 218 (342)
..++..+...+.... ....+|++++|-+=+.... .....+..+.....+....+.+|||... +
T Consensus 136 --------------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 136 --------------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred --------------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 123334433332211 1235899999999765321 1223334444444445557789998643 4
Q ss_pred HHHHHHHh
Q 019359 219 VETLARQF 226 (342)
Q Consensus 219 ~~~~~~~~ 226 (342)
....+..|
T Consensus 201 ~~~~~~~f 208 (270)
T PRK06731 201 MIEIITNF 208 (270)
T ss_pred HHHHHHHh
Confidence 44555544
No 275
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.78 E-value=0.033 Score=49.64 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=31.9
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC-c-HHHHHHHHHHHHHhcCCCCeEEEEE
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-T-RELAVQIQEEALKFGSRAGIRSTCI 134 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p-~-~~l~~q~~~~~~~~~~~~~~~~~~~ 134 (342)
-+++.|++|+|||+++.-.+. .+... +.++++++. + +.-+. ++++.++...++.+...
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~~-------G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~ 161 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQRK-------GFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGS 161 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHC-------CCCEEEEcCcccchhHH---HHHHHHhhccCCeEEee
Confidence 467899999999987554433 23221 456666654 2 22222 33444444456665443
No 276
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.77 E-value=0.0051 Score=52.12 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=16.2
Q ss_pred CCEEEEcCCCCchhhHhHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPA 85 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~ 85 (342)
+.+++.||+|+|||.+....+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467899999999998754433
No 277
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.77 E-value=0.0077 Score=53.63 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=23.4
Q ss_pred HHHhhHHHHhcCCCEEEEcCCCCchhhHhH
Q 019359 53 IQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 53 ~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~ 82 (342)
....++..+..++++++.||+|+|||..+-
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344556666778999999999999997643
No 278
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.76 E-value=0.0082 Score=47.00 Aligned_cols=141 Identities=18% Similarity=0.109 Sum_probs=71.2
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
....+.+..++|.|||.+++-.++..+.. |.+|+++---+.-..+ -+...+....++.+.....+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--------G~~V~ivQFlKg~~~~--GE~~~l~~l~~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH--------GKKVGVVQFIKGAWST--GERNLLEFGGGVEFHVMGTGFTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCCcc--CHHHHHhcCCCcEEEECCCCCcccC
Confidence 45689999999999999877766666655 6778887544432111 1111111111333332222110000
Q ss_pred hHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCC--hHHHHHHHhhcCCCccEEEEEee-cCchH
Q 019359 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSAT-WPREV 219 (342)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT-~~~~~ 219 (342)
. ...--.......+...... ..-..+|++|+||+-...+.++ ...+..+++..+....+| +|+- +++.+
T Consensus 91 ~------~~~e~~~~~~~~~~~a~~~-l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV-lTGR~~p~~L 162 (191)
T PRK05986 91 Q------DRERDIAAAREGWEEAKRM-LADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV-ITGRGAPREL 162 (191)
T ss_pred C------CcHHHHHHHHHHHHHHHHH-HhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE-EECCCCCHHH
Confidence 0 0000000111122222211 1125689999999998877764 455666666655444444 5554 45544
Q ss_pred HH
Q 019359 220 ET 221 (342)
Q Consensus 220 ~~ 221 (342)
..
T Consensus 163 ie 164 (191)
T PRK05986 163 IE 164 (191)
T ss_pred HH
Confidence 33
No 279
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.016 Score=54.21 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+..|+.||.|+|||.++.+
T Consensus 38 HAyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARI 56 (702)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3469999999999986543
No 280
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.74 E-value=0.013 Score=62.22 Aligned_cols=61 Identities=26% Similarity=0.204 Sum_probs=43.9
Q ss_pred CCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhH---HHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 019359 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYL---LPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~---~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~ 116 (342)
.+++.|..++..+..+ +-++++|+.|+|||...- -++...+.. .+.+++.++|+-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 7899999999998765 457889999999997531 222233222 266799999997766554
No 281
>PLN03025 replication factor C subunit; Provisional
Probab=96.74 E-value=0.026 Score=48.86 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=23.4
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
..+++|+||+|.+.... ...+...++..+....+++.+
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 47899999999875432 445555555544444444433
No 282
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.0068 Score=52.43 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
.+.++.||+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 578999999999997543
No 283
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.01 Score=56.52 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=63.3
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC-cHH--HHHHHHHHHHHhcCCCCeEEEEEecCCcch
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-TRE--LAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p-~~~--l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
+-+.+.||+|+|||++....+........ +.++.+++- +.- -..| ++.++...++.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G------~kkV~lit~Dt~RigA~eQ----L~~~a~~~gvpv~--------- 246 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREG------ADQLALLTTDSFRIGALEQ----LRIYGRILGVPVH--------- 246 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcC------CCeEEEecCcccchHHHHH----HHHHHHhCCCCcc---------
Confidence 45789999999999875544333222210 234544443 221 2333 3333333343321
Q ss_pred hhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcC-CChHHHHHHHhhcCCCccEEEEEeecCc-hH
Q 019359 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPR-EV 219 (342)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~ 219 (342)
++.+++.+...+.. +...|+|+||=+-+.... .....+..+.....+...++.++||... .+
T Consensus 247 ------------~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l 310 (767)
T PRK14723 247 ------------AVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL 310 (767)
T ss_pred ------------ccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH
Confidence 22355555554443 334688899888754321 1122333333333445567788888643 33
Q ss_pred HHHHHHh
Q 019359 220 ETLARQF 226 (342)
Q Consensus 220 ~~~~~~~ 226 (342)
......|
T Consensus 311 ~~i~~~f 317 (767)
T PRK14723 311 NEVVHAY 317 (767)
T ss_pred HHHHHHH
Confidence 3344444
No 284
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.013 Score=56.51 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=21.8
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYW 211 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 211 (342)
.++.++||||+|+|... -.+.+.+.++..+...++|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 45789999999997433 233444444444434444443
No 285
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.018 Score=52.07 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=24.3
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p 108 (342)
..+++.||+|+|||..+. ++...+.... .+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~-----~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNE-----PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhC-----CCCeEEEEEH
Confidence 468999999999998533 3444443321 1456777754
No 286
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.029 Score=52.59 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
..+.++||||+|.+.... .+.+.+.++..+....+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 568899999999874332 233444444433344444434
No 287
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.69 E-value=0.013 Score=44.65 Aligned_cols=134 Identities=14% Similarity=0.072 Sum_probs=69.0
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHH-HHHHHHHhcCCCCeEEEEEecCCc----ch
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ-IQEEALKFGSRAGIRSTCIYGGAP----KG 141 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q-~~~~~~~~~~~~~~~~~~~~~~~~----~~ 141 (342)
+.+-.++|.|||.+++..++..+.. +.+++++---+.-..+ -...++++ .++.+..+..+.. ..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~--------g~~v~~vQFlKg~~~~gE~~~l~~l---~~v~~~~~g~~~~~~~~~~ 73 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGH--------GYRVGVVQFLKGGWKYGELKALERL---PNIEIHRMGRGFFWTTEND 73 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEEeCCCCccCHHHHHHhC---CCcEEEECCCCCccCCCCh
Confidence 5566788999999877767666655 6678884332221000 01233333 2444433222211 00
Q ss_pred hhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCC--hHHHHHHHhhcCCCccEEEEEeecCchH
Q 019359 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREV 219 (342)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 219 (342)
..... .....++.... ......+|++|+||+-.....++ ...+..+++..+....+|+.+-.+++.+
T Consensus 74 ~~~~~----------~a~~~~~~a~~-~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l 142 (159)
T cd00561 74 EEDIA----------AAAEGWAFAKE-AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKEL 142 (159)
T ss_pred HHHHH----------HHHHHHHHHHH-HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 00000 00112222111 11235689999999998766553 4566667776666656666656666654
Q ss_pred HHH
Q 019359 220 ETL 222 (342)
Q Consensus 220 ~~~ 222 (342)
...
T Consensus 143 ~e~ 145 (159)
T cd00561 143 IEA 145 (159)
T ss_pred HHh
Confidence 443
No 288
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.68 E-value=0.03 Score=53.00 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=87.1
Q ss_pred HHHHHcCCCCCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 019359 40 EVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (342)
Q Consensus 40 ~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~ 117 (342)
..+.....+.....|.+.+..+... +-+++.|+-|=|||.+.=+++........ ..+++|.+|+.+-++.+.
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~------~~~iiVTAP~~~nv~~Lf 278 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG------SVRIIVTAPTPANVQTLF 278 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC------CceEEEeCCCHHHHHHHH
Confidence 3345444555555566666666654 35788899999999764433322222210 347999999999999888
Q ss_pred HHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHH
Q 019359 118 EEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (342)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (342)
+.+.+-....|++............. ...+...|=+.+|.... ..-|++|||||=.+ --+.+..
T Consensus 279 ~fa~~~l~~lg~~~~v~~d~~g~~~~--~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~ 342 (758)
T COG1444 279 EFAGKGLEFLGYKRKVAPDALGEIRE--VSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHK 342 (758)
T ss_pred HHHHHhHHHhCCccccccccccceee--ecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHH
Confidence 87776544455443222221111111 01112334455554332 11589999999876 3456666
Q ss_pred HHhhcCCCccEEEEEeecC
Q 019359 198 IVTQIRPDRQTLYWSATWP 216 (342)
Q Consensus 198 ~~~~~~~~~~~i~~SaT~~ 216 (342)
+...+ +.++||.|+.
T Consensus 343 l~~~~----~rv~~sTTIh 357 (758)
T COG1444 343 LLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHhhc----CceEEEeeec
Confidence 65544 3588898964
No 289
>PRK04195 replication factor C large subunit; Provisional
Probab=96.66 E-value=0.018 Score=52.86 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999753
No 290
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.64 E-value=0.026 Score=50.51 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=17.8
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
.++++.||+|+|||.+ +-.++..+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 6799999999999975 33344444
No 291
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.026 Score=49.85 Aligned_cols=18 Identities=28% Similarity=0.191 Sum_probs=14.3
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
..++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 358999999999976443
No 292
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.61 E-value=0.0053 Score=49.16 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
.++++.||+|+|||..+-
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 468999999999997533
No 293
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.60 E-value=0.009 Score=46.04 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=28.7
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecC
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP 216 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 216 (342)
....++|+||+|.+... -.+.+.+.++..+.+..+|++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 46889999999987544 35566666666666666666665544
No 294
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.60 E-value=0.018 Score=52.05 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=84.5
Q ss_pred CCcHHHHhhHHHHhc------C----CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALK------G----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~------~----~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~ 118 (342)
.+-|+|..++..+.- + ..+++..|-+-|||..+...+...+.-... .+..+.|++|+..-+.+...
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~----~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR----SGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh----cCCcEEEEeccHHHHHHhhH
Confidence 788999999988761 1 357899999999997654333222222211 37789999999999998888
Q ss_pred HHHHhcCCCCeEEEEEecCCcchhhHHhhcC-CCcEEEeChHHHHHHHhc--cccCCCCccEEEEeccchhhcCCChHHH
Q 019359 119 EALKFGSRAGIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEA--QHTNLRRVTYLVLDEADRMLDMGFEPQI 195 (342)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIvDE~h~~~~~~~~~~~ 195 (342)
.++....... . . ........ ...|...-.....+.+.. +..+-.+..+.|+||.|.....+ ..+
T Consensus 137 ~ar~mv~~~~-~---------l-~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~ 203 (546)
T COG4626 137 PARDMVKRDD-D---------L-RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMY 203 (546)
T ss_pred HHHHHHHhCc-c---------h-hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHH
Confidence 7776543322 0 0 00000000 001111111111122221 22233457899999999865442 445
Q ss_pred HHHHhhc--CCCccEEEEEee
Q 019359 196 RKIVTQI--RPDRQTLYWSAT 214 (342)
Q Consensus 196 ~~~~~~~--~~~~~~i~~SaT 214 (342)
..+...+ .++.++++.|..
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHhhhccCcCceEEEEecC
Confidence 5554444 346677777764
No 295
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.59 E-value=0.021 Score=47.16 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=35.9
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|..+++.||+|+|||..++-.+...+.. +.++++++- .+-..+..+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 45678999999999998654444444432 556888875 445566777676654
No 296
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.021 Score=49.08 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=30.4
Q ss_pred CCCcHHHHhhHHHHhc----C---CCEEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 48 VEPTPIQAQGWPMALK----G---RDLIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~----~---~~~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
+.++|+|..++..+.. + +-.++.||.|.||+..+.. +...+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 5788999999887653 3 2488999999999975433 3344433
No 297
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.57 E-value=0.058 Score=44.23 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=33.4
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
+..+..+++.|++|+|||..++-.+...+.. +.++++++... -..+..+.+..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--------g~~~~yi~~e~-~~~~~~~~~~~~ 74 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN--------GYSVSYVSTQL-TTTEFIKQMMSL 74 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--------CCcEEEEeCCC-CHHHHHHHHHHh
Confidence 3456789999999999997643333332222 55688887543 334555555554
No 298
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.57 E-value=0.012 Score=49.69 Aligned_cols=54 Identities=26% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 019359 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~ 121 (342)
-+..|.-+++.|++|+|||..++-.+...+.. .+.++++++--. -..++...+.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~E~-~~~~~~~r~~ 79 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISLEE-PVVRTARRLL 79 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEccc-CHHHHHHHHH
Confidence 34566788999999999997544433333322 155688876532 2334444443
No 299
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.55 E-value=0.033 Score=46.71 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
.++++.||+|+|||.++-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 578999999999998643
No 300
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.056 Score=50.51 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+-.|+.||.|+|||.++-.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4478899999999976443
No 301
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.55 E-value=0.019 Score=53.32 Aligned_cols=132 Identities=18% Similarity=0.148 Sum_probs=76.3
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCC--CeEEEEEecCCcc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA--GIRSTCIYGGAPK 140 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~ 140 (342)
+.+-.++..|--.|||+... +++..+.... .+.++++.+|.+..++...+++..+.... +..+..+.| ...
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~-----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATF-----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhC-----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 45667889999999998654 4444333221 17789999999999999988887753321 111111222 111
Q ss_pred hhhHHhhcCC--CcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhh-cCCCccEEEEEee
Q 019359 141 GPQIRDLRRG--VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ-IRPDRQTLYWSAT 214 (342)
Q Consensus 141 ~~~~~~~~~~--~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SaT 214 (342)
.-.+.++ ..+.+.|. ...+...-+.++++|||||+-+... .+..++-. ...++++|++|.|
T Consensus 326 ---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred ---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecC
Confidence 0111112 24555431 1222233457999999999976443 33333221 1347889999977
No 302
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.024 Score=51.61 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
..++.||+|+|||..+-+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999976443
No 303
>PRK05973 replicative DNA helicase; Provisional
Probab=96.54 E-value=0.036 Score=45.38 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=36.9
Q ss_pred HHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
-+..|.-+++.|++|+|||..++-.+...+.. +.+++|++--.. ..|+.+.+..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEEeCC-HHHHHHHHHHc
Confidence 44456778999999999997655444444332 556888865433 46777777775
No 304
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.52 E-value=0.015 Score=49.71 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=40.5
Q ss_pred HHHHHHcCCCCCcHHHHhhHHH-HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 39 LEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 39 ~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
.+.+...|. +.+.|.+.+.. +..+.+++++|+||+|||.. +-+++..+.... ...+++++=...++
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhh
Confidence 344444443 44555555544 45567999999999999974 444555443321 14567787776665
No 305
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.049 Score=47.57 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=58.1
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc-CcHH--HHHHHHHHHHHhcCCCCeEEEEEecCCcc
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA-PTRE--LAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~-p~~~--l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (342)
++.+++.||+|+|||.+....+...... +.++.+++ .+.- -+.||....+. .++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~--------g~~V~lItaDtyR~gAveQLk~yae~----lgvpv~-------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQ--------NRTVGFITTDTFRSGAVEQFQGYADK----LDVELI-------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCccCccHHHHHHHHhhc----CCCCEE--------
Confidence 4567899999999998755544332222 34454443 3322 23454443333 343322
Q ss_pred hhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcC-CChHHHHHHHhhcCCCccEEEEEeecC
Q 019359 141 GPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWP 216 (342)
Q Consensus 141 ~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~ 216 (342)
+..+|+.+...+.... ....+|+|+||=+-+.... .....+..+.....+....+.+|++..
T Consensus 266 -------------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 266 -------------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred -------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 1234444444333211 1134789999988754211 122233333333333333455666543
No 306
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.018 Score=55.86 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
.+++++||||+|+|.... .+.+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 468899999999985432 334444555544445555544
No 307
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.47 E-value=0.0086 Score=49.18 Aligned_cols=86 Identities=24% Similarity=0.353 Sum_probs=63.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC-cchhhHHhhcC-CCcEEEeChHHHHHHHhccccCCCCcc
Q 019359 99 EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGA-PKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVT 176 (342)
Q Consensus 99 ~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~ 176 (342)
+.+.+|||+.+---+..+.+.++.|.. .+..+.-+++.. ...+++..+.+ ..+|.||||+++..+++.+.+.+..+.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 378999999988878888888887631 123343344432 44445555543 589999999999999999998999999
Q ss_pred EEEEeccch
Q 019359 177 YLVLDEADR 185 (342)
Q Consensus 177 ~iIvDE~h~ 185 (342)
+||+|--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998773
No 308
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.47 E-value=0.012 Score=50.03 Aligned_cols=59 Identities=25% Similarity=0.149 Sum_probs=40.9
Q ss_pred CCCCCcHHHHhhHHHHhcCC-CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHH
Q 019359 46 GFVEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (342)
Q Consensus 46 ~~~~l~~~Q~~~~~~~~~~~-~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~ 113 (342)
.|..+++.|-..+..+...+ +++++|.||||||+. +-++....-. ..+++.+=.+.+|.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~--------~eRvItiEDtaELq 213 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDS--------DERVITIEDTAELQ 213 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCC--------cccEEEEeehhhhc
Confidence 34578888888877666665 999999999999974 2222222222 34788887777773
No 309
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.47 E-value=0.03 Score=48.59 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=26.1
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEe
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 213 (342)
....++|+|||+.+... -.+.+...+...+.+..+++.+.
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 56889999999987543 34555555555555555555544
No 310
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.44 E-value=0.0054 Score=48.05 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=26.7
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHH
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q 115 (342)
+.+++++++.||+|+|||..+...+-..+.. +..++++ +...|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~--------g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK--------GYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC--------CcceeEe-ecCceecc
Confidence 3457899999999999998755443333332 5567665 44445443
No 311
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.44 E-value=0.099 Score=44.02 Aligned_cols=123 Identities=25% Similarity=0.295 Sum_probs=60.3
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc-Cc-HHH-HHHHHHHHHHhcCCCCeEEEEEecCCcch
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA-PT-REL-AVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~-p~-~~l-~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
+-+++.||+|+|||.+....+... ... +.+++++. .+ +.- ..|...+.+. .++.+.....+...
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~~-------g~~V~li~~D~~r~~a~~ql~~~~~~----~~i~~~~~~~~~dp- 139 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KKQ-------GKSVLLAAGDTFRAAAIEQLEEWAKR----LGVDVIKQKEGADP- 139 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hhc-------CCEEEEEeCCCCCHHHHHHHHHHHHh----CCeEEEeCCCCCCH-
Confidence 457788999999998755544333 221 55666665 22 222 2333333333 34443321111100
Q ss_pred hhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcC-CChHHHHHHHhhcC------CCccEEEEEee
Q 019359 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIR------PDRQTLYWSAT 214 (342)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~------~~~~~i~~SaT 214 (342)
. ......+... ....++++++|=+-+.... .....+..+....+ +...++.++|+
T Consensus 140 -~---------------~~~~~~l~~~--~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 140 -A---------------AVAFDAIQKA--KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred -H---------------HHHHHHHHHH--HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 0 0111111111 1245789999988765321 12233444444333 55667888888
Q ss_pred cCch
Q 019359 215 WPRE 218 (342)
Q Consensus 215 ~~~~ 218 (342)
...+
T Consensus 202 ~~~~ 205 (272)
T TIGR00064 202 TGQN 205 (272)
T ss_pred CCHH
Confidence 6544
No 312
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.026 Score=52.91 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
-.|+.||.|+|||.++.+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999986544
No 313
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.43 E-value=0.041 Score=49.01 Aligned_cols=71 Identities=17% Similarity=0.025 Sum_probs=49.3
Q ss_pred CCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 47 ~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
+..+...|.++.-..-.|.. -+.|=.|||||.+.+..+ +.++... ...++++-+-++.|++++.....+|+
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~kn-----Pd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHSKN-----PDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhcCC-----CCceEEEEeehHHHHHHHHHHHHHHH
Confidence 33556677777655445544 678889999998755443 3333332 26789999999999999888777664
No 314
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.42 E-value=0.014 Score=50.04 Aligned_cols=65 Identities=20% Similarity=0.124 Sum_probs=40.8
Q ss_pred HHHHHcCCCCCcHHHHhhHHH-HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 40 EVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 40 ~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
+.+...|. +.+.|...+.. +..+.+++++|+||+|||.. +-+++..+...+. +.+++.+=...+|
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~-----~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAP-----EDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCC-----CceEEEecCCccc
Confidence 34445453 56677776654 44567999999999999974 4445554432211 4467777666665
No 315
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.42 E-value=0.02 Score=53.82 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+.+|+.||.|+|||.++.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3579999999999986543
No 316
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.41 E-value=0.063 Score=44.03 Aligned_cols=52 Identities=27% Similarity=0.330 Sum_probs=31.4
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.|..+++.|++|+|||..+...+...+.. +..++++.. ..-..++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 45778999999999997544333333322 445777764 33334555555544
No 317
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.048 Score=50.54 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=22.4
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
.++.++||||+|.+.... .+.+.+.++..+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 467899999999875432 223333344434444455444
No 318
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.39 E-value=0.043 Score=47.02 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=18.5
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
++++++.||+|+|||..+.. +...+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~A-ia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA-IANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 45799999999999986443 334433
No 319
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.39 E-value=0.02 Score=54.33 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHhC-C-CCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 255 EAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMD-G-WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 255 ~~~~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
.+.|...+++++++... |+.+||.++.+..+..+.+.|++. + ..+..+|+++++.+|........+|+.+|+|+|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 35777788888877655 788999999999999999999865 3 57899999999999999999999999999999965
Q ss_pred c
Q 019359 332 A 332 (342)
Q Consensus 332 ~ 332 (342)
+
T Consensus 250 A 250 (665)
T PRK14873 250 A 250 (665)
T ss_pred e
Confidence 3
No 320
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.049 Score=48.27 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=59.6
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc-CcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA-PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~-p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
-+++.||+|+|||.++...+....... +.++.+++ .+.-.+ ....++.++...++....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~-------G~~V~Lit~Dt~R~a--A~eQLk~yAe~lgvp~~~----------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHM-------GKSVSLYTTDNYRIA--AIEQLKRYADTMGMPFYP----------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc-------CCeEEEecccchhhh--HHHHHHHHHHhcCCCeee-----------
Confidence 377899999999987555443332221 44454443 221111 112344443333333211
Q ss_pred HhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc-CCChHHHHHHHhhcC---CCccEEEEEeecCc-hH
Q 019359 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIR---PDRQTLYWSATWPR-EV 219 (342)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~---~~~~~i~~SaT~~~-~~ 219 (342)
+..+..+...+.. ..+|+|+||=+-.... ......+..+..... +...++.+|||... .+
T Consensus 285 ----------~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~ 349 (432)
T PRK12724 285 ----------VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT 349 (432)
T ss_pred ----------hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH
Confidence 0112223333321 3578999997654321 112233333443331 23467888999765 34
Q ss_pred HHHHH
Q 019359 220 ETLAR 224 (342)
Q Consensus 220 ~~~~~ 224 (342)
.....
T Consensus 350 ~~~~~ 354 (432)
T PRK12724 350 LTVLK 354 (432)
T ss_pred HHHHH
Confidence 44444
No 321
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.37 E-value=0.013 Score=48.01 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=65.0
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCe-----EEEEEecC
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGI-----RSTCIYGG 137 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~-----~~~~~~~~ 137 (342)
+|..+++.||+|+|||..++-.+.+.+... +.++++++-. +-..++.+.++.++....- ....+...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 346789999999999976554444454441 3347887753 3336667777765322100 01111111
Q ss_pred CcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC----ChHHHHHHHhhcCCCccEEEEEe
Q 019359 138 APKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG----FEPQIRKIVTQIRPDRQTLYWSA 213 (342)
Q Consensus 138 ~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~----~~~~~~~~~~~~~~~~~~i~~Sa 213 (342)
...... . -..++.+...+...... .+.+.+|+|-...+.... ++..+..+...+.......++++
T Consensus 90 ~~~~~~--------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 90 PERIGW--------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGGST---------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cccccc--------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 110000 0 11233333333221111 123899999999873222 23444555555544445556665
Q ss_pred e
Q 019359 214 T 214 (342)
Q Consensus 214 T 214 (342)
.
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 5
No 322
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.35 E-value=0.013 Score=50.42 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCCCcHHHHhhHHH-HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 37 YCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 37 ~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
...+.+...|. +.+.|.+.+.. +..+.++++.|+||+|||.. +-.++..+...+ ...+++++-.+.++
T Consensus 122 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 122 FTLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 33445555554 45667777664 45678999999999999964 444444432111 14467777666655
No 323
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.35 E-value=0.048 Score=49.11 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
.++++.||+|+|||..+-
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997533
No 324
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.34 E-value=0.018 Score=44.37 Aligned_cols=50 Identities=14% Similarity=0.288 Sum_probs=32.5
Q ss_pred CCccEEEEeccchhhcCCC--hHHHHHHHhhcCCCccEEEEEeecCchHHHH
Q 019359 173 RRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREVETL 222 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 222 (342)
..+|++|+||+-...+.++ ...+..+++..+....+|+..-.+++.+...
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~ 147 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLEL 147 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 4689999999998777663 3556666666665555554444455544433
No 325
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.33 E-value=0.014 Score=46.73 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEee
Q 019359 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (342)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 214 (342)
-....++|+|||+.+-+. -...+++..+.+.+..+..+...+
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 356889999999987553 355666666666555554444333
No 326
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.31 E-value=0.018 Score=52.09 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=16.9
Q ss_pred CCCEEEEcCCCCchhhHhHHHH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPA 85 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~ 85 (342)
++-+.+.||+|+|||++....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3457899999999998755444
No 327
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.063 Score=50.13 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
....++||||+|.+.... .+.+...++..+....+|+.|
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 568899999999875432 233334444444444444444
No 328
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.28 E-value=0.096 Score=43.11 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=34.7
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.+.-+++.|++|+|||..+...+...+.. +.+++++.-.... .++.+.+..+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e~~~-~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTENTS-KSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcCCCH-HHHHHHHHHCC
Confidence 34668899999999997544433333332 5678888765444 56666676653
No 329
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.26 E-value=0.041 Score=49.88 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=51.4
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
|.-+++.|++|+|||...+..+. .... .+.+++|+.-. +-..|+...+.+++...+ ++. +...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~-~~a~-------~g~~vlYvs~E-es~~qi~~ra~rlg~~~~-~l~-~~~e------ 142 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAA-RLAA-------AGGKVLYVSGE-ESASQIKLRAERLGLPSD-NLY-LLAE------ 142 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHHh-------cCCeEEEEEcc-ccHHHHHHHHHHcCCChh-cEE-EeCC------
Confidence 35678999999999975443333 2222 15578888764 344677666666533211 000 0000
Q ss_pred HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc
Q 019359 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (342)
...+.+...+.. ...+++|+|+.+.+..
T Consensus 143 ------------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 ------------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ------------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 123334444432 2478999999997754
No 330
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.25 E-value=0.024 Score=54.38 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=67.8
Q ss_pred EEEEechhhHHH-HHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCC
Q 019359 249 VVEVVTEAEKYN-RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRS 323 (342)
Q Consensus 249 ~~~~~~~~~~~~-~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 323 (342)
.+.......|.. .+..++.....+.+++|.+|+..-|.+.++.+++ .++++..++|+++..++...+....+|+.
T Consensus 286 Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~ 365 (681)
T PRK10917 286 LLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEA 365 (681)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 333333344433 2333333444577999999999999988887764 36889999999999999999999999999
Q ss_pred CEEEEecc-cccCCCCCCC
Q 019359 324 PIMTATDV-AARGLGRITV 341 (342)
Q Consensus 324 ~vlv~t~~-~~~Gidip~v 341 (342)
+|+|+|.. +...+.++++
T Consensus 366 ~IvVgT~~ll~~~v~~~~l 384 (681)
T PRK10917 366 DIVIGTHALIQDDVEFHNL 384 (681)
T ss_pred CEEEchHHHhcccchhccc
Confidence 99999954 4445555543
No 331
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.25 E-value=0.049 Score=47.95 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=50.7
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
|.-+++.|++|+|||..++..+ ..+... +.+++|+.... -..|+...+.++....+ ++ .+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a-~~~a~~-------g~~VlYvs~EE-s~~qi~~Ra~rlg~~~~-~l-~l~~------- 143 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVA-ARLAKR-------GGKVLYVSGEE-SPEQIKLRADRLGISTE-NL-YLLA------- 143 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHH-HHHHhc-------CCeEEEEECCc-CHHHHHHHHHHcCCCcc-cE-EEEc-------
Confidence 4568899999999997544333 332221 45688887643 34566666666532110 00 0000
Q ss_pred HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
-++.+.+.+.+.. ...+++|||+++.+.
T Consensus 144 -----------e~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 144 -----------ETNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred -----------cCcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 0223444444432 247899999999875
No 332
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.23 E-value=0.04 Score=45.58 Aligned_cols=41 Identities=29% Similarity=0.125 Sum_probs=27.5
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p 108 (342)
+..|+-+++.|++|+|||..++-.+...+... +..+++++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-------g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ-------GKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCceEEEeC
Confidence 34566789999999999975444444443331 456888875
No 333
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.23 E-value=0.046 Score=52.48 Aligned_cols=18 Identities=33% Similarity=0.235 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
.++++.||+|+|||..+-
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997543
No 334
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.23 E-value=0.016 Score=56.04 Aligned_cols=68 Identities=18% Similarity=0.051 Sum_probs=56.2
Q ss_pred CCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCc
Q 019359 150 GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (342)
Q Consensus 150 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 217 (342)
...|+++||+.+..-+..+.+++..+..+||||||++........+.+++...++..-+.++|+.|..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 36899999999988888888889999999999999987665555666666666677889999999864
No 335
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.046 Score=51.29 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+..|+.||.|+|||.++.+
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARI 65 (598)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999986544
No 336
>PHA00729 NTP-binding motif containing protein
Probab=96.20 E-value=0.065 Score=43.33 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=36.3
Q ss_pred CcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC-Ch----HHHHHHHhhcCCCccEEEEEeecCchHHHHHH
Q 019359 151 VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FE----PQIRKIVTQIRPDRQTLYWSATWPREVETLAR 224 (342)
Q Consensus 151 ~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~----~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 224 (342)
....+.+.+.+.+.+..........+++|+||+-.-.... +. ..+..+...+.+...++.++..-+..+....+
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 3456666666666554322222346899999954322211 11 12223334444445566666554444444433
No 337
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.063 Score=48.02 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
..++.||.|+|||.++.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999986544
No 338
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=96.17 E-value=0.078 Score=40.95 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=59.2
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHh
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD 146 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (342)
+.+-...|-|||.+++-.++..+-. +.+|+++---+.-.. .-+...+....++.+..+..+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~--------G~rV~ivQFlKg~~~--~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~ 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH--------GMRVLIVQFLKGGRY--SGELKALKKLPNVEIERFGKGFVWRMNEEE 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT--------T--EEEEESS--SS----HHHHHHGGGT--EEEE--TT----GGGHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC--------CCEEEEEEEecCCCC--cCHHHHHHhCCeEEEEEcCCcccccCCCcH
Confidence 4566678999998776666666544 778999876655111 122222211222333322221111000000
Q ss_pred hcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCC--hHHHHHHHhhcCCCccEEEEEeecCchHH
Q 019359 147 LRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREVE 220 (342)
Q Consensus 147 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 220 (342)
.+ ....+..++.... ...-..+|++|+||+-...+.++ ...+..+++..+....+|+.--.+++.+.
T Consensus 76 ----~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~ 144 (172)
T PF02572_consen 76 ----ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELI 144 (172)
T ss_dssp ----HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHH
T ss_pred ----HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHH
Confidence 01 0111122222221 12235699999999998877664 35566666655555555544444444443
No 339
>PF13173 AAA_14: AAA domain
Probab=96.17 E-value=0.083 Score=38.85 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=24.0
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeec
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 215 (342)
.-.++++||+|.+. ++...+..+.... ++.+ +.+|++.
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~-ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIK-IILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCce-EEEEccc
Confidence 35689999999874 3566666666644 2334 4455553
No 340
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=96.16 E-value=0.066 Score=41.45 Aligned_cols=140 Identities=19% Similarity=0.147 Sum_probs=68.7
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH-HHHHHHhcCCCCeEEEEEecCCcchhhHH
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI-QEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
+++.-..|-|||.+++-.++..+.. |.++.|+---+.-...- ...+..| ..++....+..+..-.....
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh--------G~rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~~~~~ 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH--------GLRVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWETQDR 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC--------CCEEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCCCcCc
Confidence 6677788999998877666666544 77788774332221111 1123333 12333333322221111100
Q ss_pred hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCCh--HHHHHHHhhcCCCccEEEEEeecCchHHHHH
Q 019359 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFE--PQIRKIVTQIRPDRQTLYWSATWPREVETLA 223 (342)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 223 (342)
. .++ ......+...... +.-.+++++|+||.-..+..++. ..+..+++.-|....+|+.--..++.+-..+
T Consensus 101 ~----~d~--~aa~~~w~~a~~~-l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~A 173 (198)
T COG2109 101 E----ADI--AAAKAGWEHAKEA-LADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELA 173 (198)
T ss_pred H----HHH--HHHHHHHHHHHHH-HhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHH
Confidence 0 011 1222222221111 11246999999999987776643 4556666655555555544434455444433
No 341
>CHL00181 cbbX CbbX; Provisional
Probab=96.15 E-value=0.03 Score=47.56 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhhHhHH
Q 019359 64 GRDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~ 83 (342)
+.++++.||+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34689999999999986543
No 342
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.12 E-value=0.0074 Score=55.53 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHHhhcC--CCcEEEEeCCchhHHHHHHHHHhCCCC-------cEeecCCCCHHHHHHHHHHHh----cC
Q 019359 255 EAEKYNRLIKLLKEVMD--GSRILIFTETKKGCDQVTRQLRMDGWP-------ALSIHGDKNQSERDWVLAEFR----SG 321 (342)
Q Consensus 255 ~~~~~~~l~~~l~~~~~--~~~~lvf~~~~~~~~~l~~~L~~~~~~-------~~~~~~~~~~~~r~~~~~~f~----~~ 321 (342)
....++.+...+..... .+.+++|+||.+-...+.+.++..|+- -..+-...+ -.++++.|. .|
T Consensus 610 s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g 686 (821)
T KOG1133|consen 610 SPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERG 686 (821)
T ss_pred ChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcC
Confidence 34555566655555433 467999999999999999999866542 222222222 356666665 45
Q ss_pred CCCEEEEe--cccccCCCCCC
Q 019359 322 RSPIMTAT--DVAARGLGRIT 340 (342)
Q Consensus 322 ~~~vlv~t--~~~~~Gidip~ 340 (342)
...+|++. ..+++|||+-|
T Consensus 687 ~GaiLlaVVGGKlSEGINF~D 707 (821)
T KOG1133|consen 687 RGAILLAVVGGKLSEGINFSD 707 (821)
T ss_pred CCeEEEEEecccccccccccc
Confidence 66688877 88999999864
No 343
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.026 Score=53.61 Aligned_cols=85 Identities=19% Similarity=0.261 Sum_probs=72.6
Q ss_pred eEEEEechhhHHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHh-CCCCcEeecCCCCHHHHHHHHHHHhcCCCCE
Q 019359 248 QVVEVVTEAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRM-DGWPALSIHGDKNQSERDWVLAEFRSGRSPI 325 (342)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 325 (342)
..+.-.+.+.|.+.+++.+++... |+.+||.+|.+.....+.+.|+. .|.++.++|+++++.+|.+.-.+...|+.+|
T Consensus 220 ~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~v 299 (730)
T COG1198 220 FLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARV 299 (730)
T ss_pred eeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceE
Confidence 344455667788888888888765 77899999999999999988875 4789999999999999999999999999999
Q ss_pred EEEeccc
Q 019359 326 MTATDVA 332 (342)
Q Consensus 326 lv~t~~~ 332 (342)
+|+|..+
T Consensus 300 VIGtRSA 306 (730)
T COG1198 300 VIGTRSA 306 (730)
T ss_pred EEEechh
Confidence 9999543
No 344
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.08 E-value=0.048 Score=48.21 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHcCCCC--CcHHHH-hh----HHHHhcCCCEEEEcCCCCchhhHhHH
Q 019359 33 NFPDYCLEVIAKLGFVE--PTPIQA-QG----WPMALKGRDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 33 ~~~~~~~~~l~~~~~~~--l~~~Q~-~~----~~~~~~~~~~l~~~~tG~GKT~~~~~ 83 (342)
...+|+-=.+.+.|+.. +...|. .. ++.+.++.|++..||+|+|||..+..
T Consensus 171 T~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 171 TLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred CHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 44567666777788742 222111 11 24556778999999999999976554
No 345
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.08 E-value=0.12 Score=46.36 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=16.6
Q ss_pred CEEEEcCCCCchhhHhHHHHHH
Q 019359 66 DLIGIAETGSGKTLSYLLPAFV 87 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~ 87 (342)
-++++|++|+|||+++.-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4778999999999875554433
No 346
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.052 Score=48.40 Aligned_cols=131 Identities=19% Similarity=0.168 Sum_probs=61.3
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
++.+.+.||+|+|||.+....+........ .....++.+++.-.. ..+.+..++...++.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-----~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v--------- 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG-----ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI--------- 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecC---------
Confidence 456889999999999875433322221111 012245555543221 2233444444444443221
Q ss_pred HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcC-CChHHHHHHHhhcCCCccEEEEEeecCc-hHHH
Q 019359 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPR-EVET 221 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~ 221 (342)
.++..+...+.. +...+.+++|.+-+.... .....+..+.....+....+.+|||... .+..
T Consensus 255 ------------~~~~dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 255 ------------KDIADLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ------------CCHHHHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 222222222222 355789999986432110 0112223322222334567889999643 3444
Q ss_pred HHHHh
Q 019359 222 LARQF 226 (342)
Q Consensus 222 ~~~~~ 226 (342)
....+
T Consensus 319 ~~~~f 323 (420)
T PRK14721 319 VISAY 323 (420)
T ss_pred HHHHh
Confidence 44433
No 347
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.073 Score=49.81 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+..|+.||.|+|||.++.+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4578999999999987544
No 348
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.04 E-value=0.053 Score=51.98 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=62.9
Q ss_pred chhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhC-CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 254 TEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 254 ~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
....|.......+.+.. .++++||.+|+++.+.++.+.|++. +..+..+||+++..++.........|+.+|+|+|..
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 34455555554444433 3778999999999999999999864 778999999999999998888899999999999963
No 349
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.03 E-value=0.035 Score=51.13 Aligned_cols=76 Identities=14% Similarity=0.248 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhC-CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 256 AEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 256 ~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
..|.......+.... .++++||.+|++.-+.++++.|++. +..+..+|++++..+|.........|+.+|+|+|..
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrs 85 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRS 85 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChH
Confidence 344444444444433 3778999999999999999999864 678899999999999999888888999999999954
No 350
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.02 E-value=0.029 Score=52.06 Aligned_cols=19 Identities=26% Similarity=0.156 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+..|+.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4578999999999976443
No 351
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.01 E-value=0.012 Score=52.72 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=29.9
Q ss_pred cHHHHhhHHHHhcCC--CEEEEcCCCCchhhHhHHHHHHhhhcC
Q 019359 51 TPIQAQGWPMALKGR--DLIGIAETGSGKTLSYLLPAFVHVSAQ 92 (342)
Q Consensus 51 ~~~Q~~~~~~~~~~~--~~l~~~~tG~GKT~~~~~~~~~~~~~~ 92 (342)
.+.|...+..+.+.. =+|+.||||||||.+ +..++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 667777777666543 377889999999986 66666666554
No 352
>PRK10867 signal recognition particle protein; Provisional
Probab=96.01 E-value=0.1 Score=46.85 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=16.0
Q ss_pred CEEEEcCCCCchhhHhHHHHH
Q 019359 66 DLIGIAETGSGKTLSYLLPAF 86 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~ 86 (342)
-++++|++|+|||++..-.+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 367889999999987554443
No 353
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=96.01 E-value=0.02 Score=44.60 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=24.6
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcH
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~ 110 (342)
.++.|||++|||.- ++..+.+.... +.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~~~-------~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYEIA-------GKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHT-------T-EEEEEEEST
T ss_pred EEEECCcCChhHHH-HHHHHHHHHhC-------CCeEEEEEecc
Confidence 46789999999975 44444444432 67789998853
No 354
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.06 Score=49.79 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=23.1
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
....++|+||+|++.... .+.+...++..+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 457899999999975432 334444444444444445444
No 355
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.98 E-value=0.02 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=18.0
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
.++++.||+|+|||.+ +-.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999975 33344444
No 356
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.98 E-value=0.33 Score=41.79 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=35.9
Q ss_pred CCcHHHHh-hHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 49 EPTPIQAQ-GWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 49 ~l~~~Q~~-~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
.+.+.|.. ++..+.++++++++|+||+|||.. +.+++..+-. ..+++.+=.+.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~--------~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP--------EERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc--------hhcEEEEeccccc
Confidence 34444443 566677889999999999999964 5555554433 3346666555444
No 357
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.049 Score=50.11 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=23.9
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
..+.++|+||+|.+.... .+.+...++..++...+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 568899999999875432 334444444445455555544
No 358
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.97 E-value=0.21 Score=38.85 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.8
Q ss_pred EEEEcCCCCchhhHhHH
Q 019359 67 LIGIAETGSGKTLSYLL 83 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~ 83 (342)
+++.|++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999986443
No 359
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.96 E-value=0.085 Score=46.60 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=28.5
Q ss_pred CccEEEEeccchhhcC-CChHHHHHHHhhcCC-CccEEEEEeecCchH
Q 019359 174 RVTYLVLDEADRMLDM-GFEPQIRKIVTQIRP-DRQTLYWSATWPREV 219 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~ 219 (342)
.+|++++|.++.+... .....+..+.+.+.. +.|+++.|..+|..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 3889999999987654 244555555555433 446666665555443
No 360
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.072 Score=50.16 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+..|+.||.|+|||.++..
T Consensus 39 ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3488999999999986543
No 361
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.95 E-value=0.016 Score=54.06 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=50.9
Q ss_pred CCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH-HHHHh
Q 019359 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE-EALKF 123 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~-~~~~~ 123 (342)
..+|+|.+.+..+... +.+.+..++-+|||.+.+..+...+... ...+|++.|+...+..+.+ .+..+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-------P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-------PGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-------CCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 6789999999987665 5789999999999986554444444443 2358999999999998864 45443
No 362
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.11 Score=43.29 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=30.0
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
+.+|+.+|+|+||+..+-..+.. .....+-+.+..|+.-|.-+-.+
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE------------AnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATE------------ANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhh------------cCCceEEeehHHHHHHHhccHHH
Confidence 45899999999999643222221 22467878888887765544333
No 363
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.90 E-value=0.036 Score=47.47 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=14.1
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
.+.+++||+|+|||..
T Consensus 163 pSmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTL 178 (554)
T ss_pred CceEEecCCCCchHHH
Confidence 4789999999999974
No 364
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.89 E-value=0.028 Score=49.34 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=20.6
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
.+..++++||||||||.. +.+++..+..
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 455789999999999975 5555565543
No 365
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.88 E-value=0.067 Score=46.45 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=28.0
Q ss_pred CcHHHHhhHHHHhc--C---CCEEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 50 PTPIQAQGWPMALK--G---RDLIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 50 l~~~Q~~~~~~~~~--~---~~~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
++|+|...+..+.. + +..++.||.|.||+..+.. +...+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 36888888877654 2 4578999999999976433 3344433
No 366
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.87 E-value=0.035 Score=48.62 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=47.0
Q ss_pred CChHHHHHhhhhcceeeeccCC-CccccccccC-------CCCHHHHHHHHHcCCCC---CcHHHHhh------------
Q 019359 1 MTETEVKMYRARREITVEGHDV-PRPIRIFQEA-------NFPDYCLEVIAKLGFVE---PTPIQAQG------------ 57 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~l~~~~~~~---l~~~Q~~~------------ 57 (342)
+|+++++.+--|.+-.+.|..- |.+-..|-.+ +.+++.... .-.|.. ++|..+..
T Consensus 81 vs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~--r~~f~~l~p~~p~~R~~le~~~~~~~~~r 158 (416)
T PRK09376 81 VSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARN--RPLFENLTPLYPNERLRLETGNPEDLSTR 158 (416)
T ss_pred eCHHHHHhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcC--CCCcccCCCCChhhcccccCCCCccccee
Confidence 4788999988888777776533 2222222221 333432221 122222 23333322
Q ss_pred -HHH---HhcCCCEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 58 -WPM---ALKGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 58 -~~~---~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
+.. +-+|+..++.||.|+|||.. +..+...+.
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~ 194 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSIT 194 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHH
Confidence 222 23578999999999999964 333444443
No 367
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.1 Score=44.93 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=24.0
Q ss_pred CcHHHHhhHHHHh----cC---CCEEEEcCCCCchhhHhHH
Q 019359 50 PTPIQAQGWPMAL----KG---RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 50 l~~~Q~~~~~~~~----~~---~~~l~~~~tG~GKT~~~~~ 83 (342)
++|+|...+..+. ++ +-.++.||.|.||+..+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~ 43 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA 43 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH
Confidence 4677777776554 33 4577999999999975443
No 368
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.042 Score=47.45 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=25.8
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~ 116 (342)
+.+|+.||+|+|||+.+=. +... +....+-+.+..|+.-|
T Consensus 246 kgvLm~GPPGTGKTlLAKA-vATE-----------c~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKA-VATE-----------CGTTFFNVSSSTLTSKW 285 (491)
T ss_pred ceeeeeCCCCCcHHHHHHH-HHHh-----------hcCeEEEechhhhhhhh
Confidence 6799999999999974222 2111 33466666666665544
No 369
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.81 E-value=0.031 Score=41.82 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhCCC------CcEeecCCCCHHHHHHHHHHHhcCCC-CEEEEecccccCCCCCC
Q 019359 284 GCDQVTRQLRMDGW------PALSIHGDKNQSERDWVLAEFRSGRS-PIMTATDVAARGLGRIT 340 (342)
Q Consensus 284 ~~~~l~~~L~~~~~------~~~~~~~~~~~~~r~~~~~~f~~~~~-~vlv~t~~~~~Gidip~ 340 (342)
..+.+...+++.+. ...++..+.+..+...+++.|++..- .||+++..+.+|+|+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g 66 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPG 66 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCC
Confidence 34555666655443 22334444555567889999986543 79999977999999997
No 370
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.81 E-value=0.056 Score=45.89 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhhHhH
Q 019359 64 GRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~ 82 (342)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999998653
No 371
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.80 E-value=0.12 Score=40.84 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=17.4
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
+..++.||.|+|||..+. .+...+.
T Consensus 15 ~~~L~~G~~G~gkt~~a~-~~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLAL-ALAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHHc
Confidence 458899999999997533 3344443
No 372
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.79 E-value=0.046 Score=52.09 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=65.2
Q ss_pred echhhHHHH-HHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEE
Q 019359 253 VTEAEKYNR-LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMT 327 (342)
Q Consensus 253 ~~~~~~~~~-l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 327 (342)
.....|... +...+.....+.++++.+|++.-|.++++.+++ .|+++..++|+++.+++....+...+|+.+|+|
T Consensus 264 ~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiV 343 (630)
T TIGR00643 264 DVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVV 343 (630)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEE
Confidence 333444332 333344444578999999999999988877764 378999999999999999999999999999999
Q ss_pred Eecc-cccCCCCCC
Q 019359 328 ATDV-AARGLGRIT 340 (342)
Q Consensus 328 ~t~~-~~~Gidip~ 340 (342)
+|.. +...+++.+
T Consensus 344 gT~~ll~~~~~~~~ 357 (630)
T TIGR00643 344 GTHALIQEKVEFKR 357 (630)
T ss_pred ecHHHHhccccccc
Confidence 9954 333444443
No 373
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.072 Score=40.18 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=58.4
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce-EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI-VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~-vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
..+.+.+++|+|||.. +.-+...+... +.+ .=+++| +.+.-+...|+++.-+..+....-.
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~-------g~kvgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~la 67 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREK-------GYKVGGFITP----------EVREGGKRIGFKIVDLATGEEGILA 67 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhc-------CceeeeEEee----------eeecCCeEeeeEEEEccCCceEEEE
Confidence 4689999999999975 55566565553 222 234455 4455555567777666544332211
Q ss_pred HHhhc----CCCcEEEeChHHHH-HHHhccccCCCCccEEEEeccchhhc--CCChHHHHHHH
Q 019359 144 IRDLR----RGVEIVIATPGRLI-DMLEAQHTNLRRVTYLVLDEADRMLD--MGFEPQIRKIV 199 (342)
Q Consensus 144 ~~~~~----~~~~iiv~T~~~l~-~~~~~~~~~~~~~~~iIvDE~h~~~~--~~~~~~~~~~~ 199 (342)
..... ..+.|.+-..+.+. ..+++. +..-|++|+||.--|-. ..|...+..++
T Consensus 68 ~~~~~~~rvGkY~V~v~~le~i~~~al~rA---~~~aDvIIIDEIGpMElks~~f~~~ve~vl 127 (179)
T COG1618 68 RVGFSRPRVGKYGVNVEGLEEIAIPALRRA---LEEADVIIIDEIGPMELKSKKFREAVEEVL 127 (179)
T ss_pred EcCCCCcccceEEeeHHHHHHHhHHHHHHH---hhcCCEEEEecccchhhccHHHHHHHHHHh
Confidence 11110 01223322222111 112221 22358999999997643 33555555554
No 374
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.23 Score=43.68 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=18.8
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
.++++.|+||+|||.+.-. ++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 5799999999999986433 4444444
No 375
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=95.75 E-value=0.11 Score=47.74 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=74.0
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-hcCCCCeEEE-EEecCCcc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRAGIRST-CIYGGAPK 140 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~-~~~~~~~~~~-~~~~~~~~ 140 (342)
+.+-.++.-|--.|||+. +.+++..+...-. +-++-++++-+..++-+.+++.. ...+.+-+.. ...+
T Consensus 201 KQkaTVFLVPRRHGKTWf-~VpiIsllL~s~~-----gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~---- 270 (668)
T PHA03372 201 KQKATVFLVPRRHGKTWF-IIPIISFLLKNII-----GISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD---- 270 (668)
T ss_pred hccceEEEecccCCceeh-HHHHHHHHHHhhc-----CceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC----
Confidence 345677888999999984 6666666555432 77899999999888876666542 1112221111 1111
Q ss_pred hhhHHhhcCCCcEEEeChHH-----HHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc-CCCccEEEEEee
Q 019359 141 GPQIRDLRRGVEIVIATPGR-----LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSAT 214 (342)
Q Consensus 141 ~~~~~~~~~~~~iiv~T~~~-----l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT 214 (342)
..|.+.-|+. +......+...-+.+++++|||||=+ -.+.+..++-.+ .+++++|++|.|
T Consensus 271 ----------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 271 ----------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ----------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcccCceEEEEeCC
Confidence 1122221110 11122334444577999999999954 233444444443 457788888877
No 376
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.72 E-value=0.059 Score=50.08 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHhhcCCCcEEEEeCCch----hHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 256 AEKYNRLIKLLKEVMDGSRILIFTETKK----GCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 256 ~~~~~~l~~~l~~~~~~~~~lvf~~~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
......++.++.....|.++.+.+||.- |...+.++|...|+++.++.|.+..+.|..+++...+|+++++|+|-+
T Consensus 295 GKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA 374 (677)
T COG1200 295 GKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA 374 (677)
T ss_pred CHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch
Confidence 3445566666666666889999999965 555566666677999999999999999999999999999999999954
Q ss_pred -cccCCCCCCC
Q 019359 332 -AARGLGRITV 341 (342)
Q Consensus 332 -~~~Gidip~v 341 (342)
+...+++.++
T Consensus 375 LiQd~V~F~~L 385 (677)
T COG1200 375 LIQDKVEFHNL 385 (677)
T ss_pred hhhcceeecce
Confidence 5566666554
No 377
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.15 Score=48.03 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.4
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
..|+.||.|+|||.++..
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 458999999999986443
No 378
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.095 Score=48.24 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=16.5
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhh
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
.++.||.|+|||.++.. +...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHh
Confidence 49999999999986443 444443
No 379
>PRK06620 hypothetical protein; Validated
Probab=95.68 E-value=0.036 Score=44.86 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=14.1
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
+.+++.||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999985
No 380
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.67 E-value=0.077 Score=46.11 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=28.0
Q ss_pred CCcHHHHhhHHHHh----cC---CCEEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 49 EPTPIQAQGWPMAL----KG---RDLIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~----~~---~~~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
.++|+|...+..+. ++ +-.++.||.|.||+..+.. +...+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 45788888877654 23 3577999999999975433 3344433
No 381
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.65 E-value=0.24 Score=42.87 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=22.6
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
...++++||+|.+.... ...+...++..+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 35799999999874322 334445555545555555544
No 382
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.64 E-value=0.11 Score=44.77 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=25.4
Q ss_pred CCcHHHHhhHHHHhc----C---CCEEEEcCCCCchhhHhH
Q 019359 49 EPTPIQAQGWPMALK----G---RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~----~---~~~l~~~~tG~GKT~~~~ 82 (342)
.++|+|...+..+.+ + +-.++.||.|.||+..+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~ 43 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE 43 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 567888888776653 3 358899999999997543
No 383
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.16 Score=48.11 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=23.1
Q ss_pred CCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEee
Q 019359 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (342)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 214 (342)
+....++||||+|.+.... .+.+...++..+... ++++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 4568899999999874321 233344444433333 3444444
No 384
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.13 Score=45.22 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=24.3
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEee
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 214 (342)
....++||||+|.+... -.+.+.+.++..+....+|++|..
T Consensus 140 ~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 140 GGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred CCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 46789999999987432 233444444544444445555544
No 385
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.61 E-value=0.022 Score=49.51 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
.+..+.++++.||||+|||.. +-+++..+.. ..+++.+=+..++
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~--------~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPP--------QERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCC--------CCCEEEECCCccc
Confidence 344678999999999999974 4444444332 3457777676655
No 386
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.60 E-value=0.38 Score=41.08 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc---CCCccEEEEEeec--CchHHHHHHHhcCC
Q 019359 160 RLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI---RPDRQTLYWSATW--PREVETLARQFLRN 229 (342)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~---~~~~~~i~~SaT~--~~~~~~~~~~~~~~ 229 (342)
.++..+..+...-+.--++|+||.+.+........+..+.... +.+..++++|... .+.+++.++.-+..
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFsh 197 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSH 197 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhccc
Confidence 3444444432222222467889999877666555555554333 3456677777664 23344444443333
No 387
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.59 E-value=0.031 Score=52.19 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=17.0
Q ss_pred HhcCCCEEEEcCCCCchhh
Q 019359 61 ALKGRDLIGIAETGSGKTL 79 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~ 79 (342)
+.+|+.+.+.||+|+|||+
T Consensus 358 i~~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKST 376 (529)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 4578999999999999996
No 388
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.58 E-value=0.3 Score=43.16 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=62.0
Q ss_pred EEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH---HHHHHHhcCC-CCeEEEEEecCCcchhh
Q 019359 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI---QEEALKFGSR-AGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 68 l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 143 (342)
++.++.|+|||......++..+...+. ...+++......+...+ ...+..+... .........+..-.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII--- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE---
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE---
Confidence 468899999999877777777666542 24566664444444432 2333333332 22222211111100
Q ss_pred HHhhcCCCcEEEeChHHH--HHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeec--CchH
Q 019359 144 IRDLRRGVEIVIATPGRL--IDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW--PREV 219 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l--~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~--~~~~ 219 (342)
+.++..+.+.+.+.- ..-+.. ..++++++||+-.+.+..+...+......... ...+..|.|+ ....
T Consensus 73 ---~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 73 ---LPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGWF 143 (384)
T ss_dssp ---ETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHH
T ss_pred ---ecCceEEEEeccccccccccccc-----cccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCce
Confidence 133455666664321 111111 34789999998876443333333333332222 2222445443 3334
Q ss_pred HHHHHHhcCCC
Q 019359 220 ETLARQFLRNP 230 (342)
Q Consensus 220 ~~~~~~~~~~~ 230 (342)
...........
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 44444444443
No 389
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.55 E-value=0.044 Score=45.93 Aligned_cols=116 Identities=18% Similarity=0.139 Sum_probs=56.3
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
.|.=+++.|.+|.|||..++-.+...+... +..+++++.--.- .++...+-.... ++....+..+.-...
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlEm~~-~~l~~R~la~~s--~v~~~~i~~g~l~~~ 87 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLEMSE-EELAARLLARLS--GVPYNKIRSGDLSDE 87 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESSS-H-HHHHHHHHHHHH--TSTHHHHHCCGCHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCCCCH-HHHHHHHHHHhh--cchhhhhhccccCHH
Confidence 345578889999999976555455444432 3568888874222 222222211111 111111111211111
Q ss_pred hH-------HhhcCCCcEEE-e----ChHHHHHHHhccccCCCCccEEEEeccchhhcC
Q 019359 143 QI-------RDLRRGVEIVI-A----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM 189 (342)
Q Consensus 143 ~~-------~~~~~~~~iiv-~----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~ 189 (342)
+. ..+. ...+.+ . |++.+...+.........+++||||-.|.+...
T Consensus 88 e~~~~~~~~~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 88 EFERLQAAAEKLS-DLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHHH-TSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHHHh-hCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 11 1122 233443 2 344555444433222256899999999987653
No 390
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.54 E-value=0.2 Score=48.47 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
..+.++.||+|+|||..+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 368999999999999763
No 391
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.54 E-value=0.041 Score=46.02 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=24.3
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHH
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~ 113 (342)
.++-||||+|||-. +..+......+ .....|++++|.+..+
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI~-P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLIQ-PPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCccc-CCCCceEEECCCCCCC
Confidence 56789999999963 22222211111 1134689999987653
No 392
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.52 E-value=0.019 Score=47.27 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=12.1
Q ss_pred EEEEcCCCCchhhH
Q 019359 67 LIGIAETGSGKTLS 80 (342)
Q Consensus 67 ~l~~~~tG~GKT~~ 80 (342)
+++.|++|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 393
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.52 E-value=0.097 Score=42.71 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=27.8
Q ss_pred HhcCC-CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 019359 61 ALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (342)
Q Consensus 61 ~~~~~-~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~ 116 (342)
+..++ -+.++|+.|+|||.+.= ++++.+.. +..++++.|...+..+.
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~--------d~~~~v~i~~~~~s~~~ 94 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLASLNE--------DQVAVVVIDKPTLSDAT 94 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHhcCC--------CceEEEEecCcchhHHH
Confidence 33455 67889999999997643 33333332 33455566655555443
No 394
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.48 E-value=0.041 Score=51.85 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=21.4
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
+..|+.+.+.||+|+|||+. +.++.++.+
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl--~~LL~r~~~ 380 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTL--IKLLLRLYD 380 (567)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhccCC
Confidence 66788899999999999963 334444444
No 395
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.47 E-value=0.58 Score=40.41 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=26.2
Q ss_pred CCccEEEEeccchhhcC-CChHHHHHHHhhc------CCCccEEEEEeecCc
Q 019359 173 RRVTYLVLDEADRMLDM-GFEPQIRKIVTQI------RPDRQTLYWSATWPR 217 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~------~~~~~~i~~SaT~~~ 217 (342)
..+|+||+|=+-+.... .....+..+.... .+...++.++||...
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 45899999999875322 1223444443322 234457888888644
No 396
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.45 E-value=0.34 Score=41.36 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=64.6
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHh
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD 146 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (342)
+++.|..|+|||++. .-+..++... |.++++.+--. ...--.++++.|+...|..++....|.....
T Consensus 142 il~vGVNG~GKTTTI-aKLA~~l~~~-------g~~VllaA~DT-FRAaAiEQL~~w~er~gv~vI~~~~G~DpAa---- 208 (340)
T COG0552 142 ILFVGVNGVGKTTTI-AKLAKYLKQQ-------GKSVLLAAGDT-FRAAAIEQLEVWGERLGVPVISGKEGADPAA---- 208 (340)
T ss_pred EEEEecCCCchHhHH-HHHHHHHHHC-------CCeEEEEecch-HHHHHHHHHHHHHHHhCCeEEccCCCCCcHH----
Confidence 678899999999873 3344444432 66777765421 1112223444444446666654322211110
Q ss_pred hcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC-ChHHHHHHHhhcCCCc------cEEEEEeecCch
Q 019359 147 LRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDR------QTLYWSATWPRE 218 (342)
Q Consensus 147 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~------~~i~~SaT~~~~ 218 (342)
| .++.++... -+.+|++++|=|-++.+.. .-..+..+.+...+.. .++.+=||....
T Consensus 209 ------V-------afDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 209 ------V-------AFDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred ------H-------HHHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 1 122233322 2458999999999876542 3445555554443322 233335776544
No 397
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.43 E-value=0.11 Score=49.00 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+..|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4579999999999986443
No 398
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.41 E-value=0.019 Score=47.43 Aligned_cols=21 Identities=29% Similarity=0.181 Sum_probs=18.0
Q ss_pred HHhcCCCEEEEcCCCCchhhH
Q 019359 60 MALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~ 80 (342)
.+-+|+.+++.+|.|+|||..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH
Confidence 456789999999999999963
No 399
>PHA00012 I assembly protein
Probab=95.41 E-value=0.6 Score=39.87 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=19.8
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
.++.|..|+|||+.++..+...+..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5789999999999877766666554
No 400
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.40 E-value=0.2 Score=43.40 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=24.9
Q ss_pred CcHHHHhhHHHHhcC-----CCEEEEcCCCCchhhHhH
Q 019359 50 PTPIQAQGWPMALKG-----RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 50 l~~~Q~~~~~~~~~~-----~~~l~~~~tG~GKT~~~~ 82 (342)
++|+|...+..+... +..++.||.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 367888888776632 357899999999997544
No 401
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=95.39 E-value=0.0098 Score=46.48 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=28.9
Q ss_pred HhhcCCCcEEEeChHHHHHHHhccccC--CCCccEEEEeccchhhc
Q 019359 145 RDLRRGVEIVIATPGRLIDMLEAQHTN--LRRVTYLVLDEADRMLD 188 (342)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~--~~~~~~iIvDE~h~~~~ 188 (342)
+.....++|+|+++..|+.-....... ...-.++||||||++.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 444556899999999987643332221 23457899999999754
No 402
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.35 E-value=0.073 Score=52.61 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=66.7
Q ss_pred EEEEechhhHHHHHH-HHHHhhcCCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCC
Q 019359 249 VVEVVTEAEKYNRLI-KLLKEVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRS 323 (342)
Q Consensus 249 ~~~~~~~~~~~~~l~-~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 323 (342)
.+.......|..... ..+.....+.+++|.+||..-|.+.++.+++ .++++..++|..+..++...++.+..|+.
T Consensus 476 Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~ 555 (926)
T TIGR00580 476 LVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKI 555 (926)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCc
Confidence 333333344443322 2333334578999999999999999888775 35678889999999999999999999999
Q ss_pred CEEEEec-ccccCCCCCCC
Q 019359 324 PIMTATD-VAARGLGRITV 341 (342)
Q Consensus 324 ~vlv~t~-~~~~Gidip~v 341 (342)
+|+|+|. .+...+.+.++
T Consensus 556 dIVIGTp~ll~~~v~f~~L 574 (926)
T TIGR00580 556 DILIGTHKLLQKDVKFKDL 574 (926)
T ss_pred eEEEchHHHhhCCCCcccC
Confidence 9999995 34445555544
No 403
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.33 E-value=0.17 Score=50.73 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=31.5
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeec
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 215 (342)
.--++|+|++|.+.+......+..++...+.+.++++.|-+.
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 345799999998755545567777888888788888877663
No 404
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.32 E-value=0.19 Score=45.65 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=51.8
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
|.-+++.|++|+|||..++.. ...+... +.+++|+..- +-..|+...+.+++...+ +.. +..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~-a~~~a~~-------g~kvlYvs~E-Es~~qi~~ra~rlg~~~~-~l~-~~~------- 155 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQV-ACQLAKN-------QMKVLYVSGE-ESLQQIKMRAIRLGLPEP-NLY-VLS------- 155 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHH-HHHHHhc-------CCcEEEEECc-CCHHHHHHHHHHcCCChH-HeE-EcC-------
Confidence 456889999999999764433 3333221 4568888764 344676666666532110 000 000
Q ss_pred HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc
Q 019359 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (342)
-++.+.+...+.. .+.+++|||....+..
T Consensus 156 -----------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 156 -----------ETNWEQICANIEE-----ENPQACVIDSIQTLYS 184 (454)
T ss_pred -----------CCCHHHHHHHHHh-----cCCcEEEEecchhhcc
Confidence 0233445554433 2468999999997643
No 405
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.059 Score=47.89 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEee
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 214 (342)
....++||||+|.+.... .+.+.+.++.-+.. .++++++|
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~-~~fIL~a~ 155 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPR-TVWLLCAP 155 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCC-CeEEEEEC
Confidence 457899999999985432 34444444443334 44445444
No 406
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.31 E-value=0.047 Score=48.02 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=20.4
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
+-+|+.+++.||+|+|||.. +..+...+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL-~~~i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL-LQKIAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHH-HHHHHHhh
Confidence 44689999999999999974 33344443
No 407
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.026 Score=51.30 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCCccEEEEeccchhhcCCChHHHHHHHhhc-CCCccEEEEEee
Q 019359 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSAT 214 (342)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT 214 (342)
..++...|+||+|++... .+..+++-+ .+..+++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~----afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQ----AFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHH----HHHHHhcccccCccCeEEEEec
Confidence 357899999999987444 333333333 234455655566
No 408
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.30 E-value=0.1 Score=40.46 Aligned_cols=133 Identities=12% Similarity=0.043 Sum_probs=68.2
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHH-HHHHHhcCCCCeEEEEEecCC-----c
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ-EEALKFGSRAGIRSTCIYGGA-----P 139 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~-~~~~~~~~~~~~~~~~~~~~~-----~ 139 (342)
-+.+.-..|-|||.+++-.++..+-. |.+|+|+---+.-..+=. ..++.+ .++....+..+. +
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~--------G~rV~iiQFlKg~~~~GE~~~l~~~---~~v~~~~~g~~~~~~~~~ 91 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQ--------GTPVLIVQFLKGGIQQGPDRPIQLG---QNLDWVRCDLPRCLDTPH 91 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcC--------CCEEEEEEEecCCCcchHHHHHHhC---CCcEEEECCCCCeeeCCC
Confidence 35566788999998877666666544 778888865444311111 112221 133333321110 0
Q ss_pred chhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCC--hHHHHHHHhhcCCCccEEEEEeecCc
Q 019359 140 KGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPR 217 (342)
Q Consensus 140 ~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT~~~ 217 (342)
..+... ...+..++..... ..-..+|++|+||+-...+.++ ...+..+++..+....+|+.--.+++
T Consensus 92 ~~~~~~----------~~~~~~~~~a~~~-l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~ 160 (178)
T PRK07414 92 LDESEK----------KALQELWQYTQAV-VDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPE 160 (178)
T ss_pred cCHHHH----------HHHHHHHHHHHHH-HhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 000000 0111222222211 1125689999999998877764 45666667766655555544444555
Q ss_pred hHH
Q 019359 218 EVE 220 (342)
Q Consensus 218 ~~~ 220 (342)
.+.
T Consensus 161 ~Li 163 (178)
T PRK07414 161 SLL 163 (178)
T ss_pred HHH
Confidence 443
No 409
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.27 E-value=0.17 Score=47.21 Aligned_cols=18 Identities=33% Similarity=0.167 Sum_probs=14.5
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
-.++.||.|+|||.++-.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976443
No 410
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.26 E-value=0.26 Score=45.42 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
|.-+++.+|+|+|||..++-.+...+.. +.+++|++- .+-..|+...++.++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~--------ge~~~y~s~-eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN--------KERAILFAY-EESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEe-eCCHHHHHHHHHHcC
Confidence 4568999999999998644433333332 567888875 555578888888764
No 411
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.071 Score=50.75 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
-.|+.||.|+|||.++-+
T Consensus 42 AYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 368999999999986543
No 412
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.23 E-value=0.078 Score=51.48 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=53.0
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhC----C-CCcEe-ecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMD----G-WPALS-IHGDKNQSERDWVLAEFRSGRSPIMTATDVA 332 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~----~-~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 332 (342)
.++++++.+||.--+.+.++.|++. + ..+.. +|+.++.++++.++++|.+|+.+|||+|+.+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 5799999999999999999888753 2 33333 9999999999999999999999999999754
No 413
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.23 E-value=0.26 Score=44.79 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhhHhHH
Q 019359 65 RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~ 83 (342)
+..|+.||.|+|||.++..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARI 58 (451)
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 3478999999999976443
No 414
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.20 E-value=0.44 Score=40.09 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=20.4
Q ss_pred CcHHHHhhHHHHh----cC-CCEEEEcCCCCchhhH
Q 019359 50 PTPIQAQGWPMAL----KG-RDLIGIAETGSGKTLS 80 (342)
Q Consensus 50 l~~~Q~~~~~~~~----~~-~~~l~~~~tG~GKT~~ 80 (342)
+++.+.+++..+. .+ +.+++.||+|+|||..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 3444455554432 33 3588999999999975
No 415
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.18 E-value=0.41 Score=46.56 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.+.++.||+|+|||..+
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999763
No 416
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.18 E-value=0.058 Score=46.28 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=28.6
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~ 114 (342)
.|+-+.+.+|+|+|||..++..+...... +.+++++..-..+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEcccchhHH
Confidence 34668899999999998655444433322 556788766554443
No 417
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.25 Score=43.26 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=25.2
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEee
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 214 (342)
....++||||+|.+.... .+.+.+.++..+....++++|..
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 467899999999874332 34455555554444555555543
No 418
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.18 E-value=0.15 Score=44.82 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=28.0
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhc-CCCccEEEEEeecCchH
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREV 219 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~ 219 (342)
...++.+||+|- .+.+-...+.+++..+ .....+++.|..+|.++
T Consensus 127 ~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 127 ESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred cCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 366899999994 3433344455554443 45566777777776653
No 419
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.16 E-value=0.052 Score=40.71 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCC---CcEeecCCCCHHHHHHHHHHHhcCCC---CEEEEecc--cccCCCCCC
Q 019359 284 GCDQVTRQLRMDGW---PALSIHGDKNQSERDWVLAEFRSGRS---PIMTATDV--AARGLGRIT 340 (342)
Q Consensus 284 ~~~~l~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~t~~--~~~Gidip~ 340 (342)
..+.+++.+++.+. ...++.......+...+++.|++..- .||+++.- ++||||+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g 67 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPD 67 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCC
Confidence 35566667765543 12233333333355788899987543 69998876 999999997
No 420
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.16 E-value=0.033 Score=48.24 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=28.3
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
+..+.+++++|+||+|||.. +-+++..+.. ..+++.+=.+.++
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCcc
Confidence 34578999999999999974 4445554433 3456665444444
No 421
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.22 Score=42.87 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=30.5
Q ss_pred cccCCCCHHHHHHHHHcCCCC-CcHHHHhhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 29 FQEANFPDYCLEVIAKLGFVE-PTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 29 ~~~~~~~~~~~~~l~~~~~~~-l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
|.+.+=-+.+.+.+...=... -+|....-...+...+.+++.+|+|+|||..
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTml 143 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTML 143 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHH
Confidence 666665555666665432211 1222222223333457899999999999975
No 422
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.13 E-value=0.19 Score=45.47 Aligned_cols=116 Identities=22% Similarity=0.178 Sum_probs=55.4
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcch
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
..|.-+++.|++|+|||..++-.+....... +..+++++.- .-..|+...+-.. ..++....+..+.-..
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~~-------g~~v~~fSlE-m~~~~l~~Rl~~~--~~~v~~~~~~~~~l~~ 261 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALRE-------GKPVLFFSLE-MSAEQLGERLLAS--KSGINTGNIRTGRFND 261 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEECC-CCHHHHHHHHHHH--HcCCCHHHHhcCCCCH
Confidence 3456678899999999975444333332221 5567887632 2334444333221 1122222222222111
Q ss_pred hhH-------HhhcCCCcEEEe-----ChHHHHHHHhccccCCCCccEEEEeccchhhc
Q 019359 142 PQI-------RDLRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 142 ~~~-------~~~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (342)
..+ ..+. +..+.|. |.+.+.............+++||||-.|.+..
T Consensus 262 ~~~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 262 SDFNRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 111 1121 2344442 34444443332211122488999999998753
No 423
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.09 E-value=0.08 Score=46.44 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=20.3
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
.+..+++.||||+|||.+ +..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 567799999999999975 444555554
No 424
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.08 E-value=0.023 Score=46.40 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=19.4
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
+..=+++.|+||||||.+ +.+++.+-..
T Consensus 126 kRGLviiVGaTGSGKSTt-mAaMi~yRN~ 153 (375)
T COG5008 126 KRGLVIIVGATGSGKSTT-MAAMIGYRNK 153 (375)
T ss_pred cCceEEEECCCCCCchhh-HHHHhccccc
Confidence 344588999999999986 4445554433
No 425
>PRK08506 replicative DNA helicase; Provisional
Probab=95.05 E-value=0.21 Score=45.78 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=56.5
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
.|.-+++.|.+|.|||..++-.+...+.. +..+++++.- .-..|+...+-... .++....+..+.-...
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~--------g~~V~~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~~~l~~~ 259 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQ--------DKGVAFFSLE-MPAEQLMLRMLSAK--TSIPLQNLRTGDLDDD 259 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhc--------CCcEEEEeCc-CCHHHHHHHHHHHh--cCCCHHHHhcCCCCHH
Confidence 34557889999999997544444333221 5567777553 34455555443321 1222222222221111
Q ss_pred hH-------HhhcCCCcEEE-----eChHHHHHHHhccccCCCCccEEEEeccchhhc
Q 019359 143 QI-------RDLRRGVEIVI-----ATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 143 ~~-------~~~~~~~~iiv-----~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (342)
.+ ..+.. ..+.| .|++.+...+.........+++||||-.+.+..
T Consensus 260 e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 260 EWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 21 12222 33444 245555443332211123478999999997753
No 426
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.03 E-value=0.056 Score=51.46 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=36.1
Q ss_pred ccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeec
Q 019359 175 VTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (342)
Q Consensus 175 ~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 215 (342)
.=++|+|+.|.+.++.....+..++++.+.+.+.++.|-+-
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 45899999999988888889999999999999999888773
No 427
>PRK09354 recA recombinase A; Provisional
Probab=94.98 E-value=0.069 Score=46.29 Aligned_cols=43 Identities=23% Similarity=0.132 Sum_probs=29.9
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~ 114 (342)
|+-+.+.||+|+|||..++..+...... +.+++++..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEECCccchHH
Confidence 4567899999999998755544444322 667888877666654
No 428
>PRK06904 replicative DNA helicase; Validated
Probab=94.97 E-value=0.48 Score=43.40 Aligned_cols=118 Identities=19% Similarity=0.059 Sum_probs=57.4
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecC-Ccc
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGG-APK 140 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~-~~~ 140 (342)
..|.=+++.|.+|.|||..++-.+....... +..+++++.- .-..|+...+-... .++....+..+ .-.
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a~~~-------g~~Vl~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~g~~l~ 288 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAAMAS-------EKPVLVFSLE-MPAEQIMMRMLASL--SRVDQTKIRTGQNLD 288 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhc-------CCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHhccCCCCC
Confidence 3445578889999999975432232222221 4557777653 44455555444321 22222222222 212
Q ss_pred hhhH-------HhhcCCCcEEE-----eChHHHHHHHhccccCCCCccEEEEeccchhhcC
Q 019359 141 GPQI-------RDLRRGVEIVI-----ATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM 189 (342)
Q Consensus 141 ~~~~-------~~~~~~~~iiv-----~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~ 189 (342)
...+ ..+.....+.| .|+..+.............+++||||-.+.+...
T Consensus 289 ~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 289 QQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC
Confidence 2222 12222334555 2455554333221111124789999999977533
No 429
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.097 Score=44.23 Aligned_cols=48 Identities=19% Similarity=0.080 Sum_probs=27.5
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcC--CCccCCCCceEEEEcCcHHHHHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQ--PRLVQGEGPIVLVLAPTRELAVQIQ 117 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~--~~~~~~~~~~vlil~p~~~l~~q~~ 117 (342)
+-+++.||+|+|||. ...++.+++.-. .++ ..-.||=..+-.|-.-|.
T Consensus 178 RliLlhGPPGTGKTS-LCKaLaQkLSIR~~~~y----~~~~liEinshsLFSKWF 227 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTS-LCKALAQKLSIRTNDRY----YKGQLIEINSHSLFSKWF 227 (423)
T ss_pred eEEEEeCCCCCChhH-HHHHHHHhheeeecCcc----ccceEEEEehhHHHHHHH
Confidence 457899999999996 355555554322 221 223455555555544433
No 430
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.86 E-value=0.024 Score=43.88 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=18.0
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
++++.|+.|+|||+. +..+++.+..
T Consensus 1 ~i~iTG~pG~GKTTl-l~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTTL-LKKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHHH-HHHHHHHHHH
T ss_pred CEEEECcCCCCHHHH-HHHHHHHhhc
Confidence 478999999999975 5556666644
No 431
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.85 E-value=0.073 Score=44.63 Aligned_cols=44 Identities=30% Similarity=0.417 Sum_probs=28.4
Q ss_pred HHHcCCCCCcHHHHhhHHHHhc--CCCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 42 IAKLGFVEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 42 l~~~~~~~l~~~Q~~~~~~~~~--~~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
+.+.|+ .+.|.+.+..+.. +..+++.||||+|||.+ +..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 445553 5556666665443 34589999999999975 44454544
No 432
>PRK10436 hypothetical protein; Provisional
Probab=94.83 E-value=0.059 Score=48.86 Aligned_cols=39 Identities=33% Similarity=0.441 Sum_probs=26.3
Q ss_pred cHHHHhhHHHHhc--CCCEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 51 TPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 51 ~~~Q~~~~~~~~~--~~~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
.+.|.+.+..+.. +.-+++.||||||||.+ +..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 4556666665443 45688999999999986 344555543
No 433
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.086 Score=43.72 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
.++++.||+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 579999999999997543
No 434
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.79 E-value=0.066 Score=46.07 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
+++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999753
No 435
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.75 E-value=0.4 Score=47.35 Aligned_cols=18 Identities=39% Similarity=0.333 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
.+.++.||+|+|||.++-
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 589999999999997643
No 436
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.75 E-value=0.2 Score=44.12 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=17.1
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
+..++.||.|+|||..+ ..+...+.
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l~ 61 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKALN 61 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhc
Confidence 34789999999999753 33444443
No 437
>PRK13764 ATPase; Provisional
Probab=94.68 E-value=0.078 Score=49.49 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=20.3
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
.+++++++||||+|||.. +.+++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999974 454555554
No 438
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.15 Score=46.84 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=13.7
Q ss_pred EEEEcCCCCchhhHhHH
Q 019359 67 LIGIAETGSGKTLSYLL 83 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~ 83 (342)
.++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999976443
No 439
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.66 E-value=0.36 Score=47.85 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.+.++.||+|+|||.++
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 68999999999999764
No 440
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.63 E-value=0.071 Score=48.84 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=26.5
Q ss_pred cHHHHhhHHHHhcC-C-CEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 51 TPIQAQGWPMALKG-R-DLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 51 ~~~Q~~~~~~~~~~-~-~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
.+.|.+.+..+... + -+++.||||+|||.+ +..++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccC
Confidence 56677777665543 3 378999999999976 444555543
No 441
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.24 Score=44.91 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
+.+|+.||+|+|||+.
T Consensus 338 KGVLLvGPPGTGKTlL 353 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLL 353 (752)
T ss_pred CceEEeCCCCCchhHH
Confidence 5799999999999974
No 442
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.46 E-value=0.077 Score=44.52 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=21.1
Q ss_pred hhHHHHhcCCCEEEEcCCCCchhhHhH
Q 019359 56 QGWPMALKGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 56 ~~~~~~~~~~~~l~~~~tG~GKT~~~~ 82 (342)
++...+..++++++.||+|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 344455678899999999999998644
No 443
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.40 E-value=0.34 Score=44.00 Aligned_cols=113 Identities=19% Similarity=0.083 Sum_probs=54.5
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
.|.-+++.|++|+|||..++-.+....... +..+++++.-- -..|+.+.+..... ++....+..+.-...
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~-------g~~vl~~SlEm-~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~ 263 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKE-------GKPVAFFSLEM-SAEQLAMRMLSSES--RVDSQKLRTGKLSDE 263 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhC-------CCeEEEEeCcC-CHHHHHHHHHHHhc--CCCHHHhccCCCCHH
Confidence 345678899999999975443333333221 45577776533 33444444433322 222211222211111
Q ss_pred hH-------HhhcCCCcEEE-----eChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 143 QI-------RDLRRGVEIVI-----ATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 143 ~~-------~~~~~~~~iiv-----~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
++ ..+.. ..+.| .|.+.+...+...... ..+++||||-.+.+.
T Consensus 264 ~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 264 DWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 11 12222 33444 2444554433322111 237899999999774
No 444
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.40 E-value=0.41 Score=47.37 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.+.++.||+|+|||..+
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999764
No 445
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=0.14 Score=48.01 Aligned_cols=139 Identities=21% Similarity=0.277 Sum_probs=72.2
Q ss_pred HHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE-EcCcHHHHHHHHHHHHHhcCCCCeEEEE-----
Q 019359 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV-LAPTRELAVQIQEEALKFGSRAGIRSTC----- 133 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli-l~p~~~l~~q~~~~~~~~~~~~~~~~~~----- 133 (342)
.+..|+.+.+.||.|+|||.+ +.++.++++-. +.++++ =+|-+.+-..|.+. .++- .+.+-+.
T Consensus 490 ti~pGe~vALVGPSGsGKSTi--asLL~rfY~Pt------sG~IllDG~~i~~~~~~~lr~--~Ig~-V~QEPvLFs~sI 558 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTI--ASLLLRFYDPT------SGRILLDGVPISDINHKYLRR--KIGL-VGQEPVLFSGSI 558 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHH--HHHHHHhcCCC------CCeEEECCeehhhcCHHHHHH--Heee-eeccceeecccH
Confidence 456789999999999999975 33556655532 333333 34555555554442 2111 1111111
Q ss_pred ----EecCCcch--------------hhHHhhcCCCcEEEeChHHHHHHHhcc-----ccCCCCccEEEEeccchhhcCC
Q 019359 134 ----IYGGAPKG--------------PQIRDLRRGVEIVIATPGRLIDMLEAQ-----HTNLRRVTYLVLDEADRMLDMG 190 (342)
Q Consensus 134 ----~~~~~~~~--------------~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~~~~~~~iIvDE~h~~~~~~ 190 (342)
.+|..+.. +.+..+..+++-.|+..+..+.==++. ..-+.+..++|+|||=.-++-.
T Consensus 559 ~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDae 638 (716)
T KOG0058|consen 559 RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAE 638 (716)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchh
Confidence 11211111 112333445666666554332110000 0013557899999999888776
Q ss_pred ChHHHHHHHhhcCCCccEE
Q 019359 191 FEPQIRKIVTQIRPDRQTL 209 (342)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i 209 (342)
....++..+..+..+..++
T Consensus 639 SE~lVq~aL~~~~~~rTVl 657 (716)
T KOG0058|consen 639 SEYLVQEALDRLMQGRTVL 657 (716)
T ss_pred hHHHHHHHHHHhhcCCeEE
Confidence 6777777776655553333
No 446
>PRK08840 replicative DNA helicase; Provisional
Probab=94.36 E-value=0.72 Score=42.14 Aligned_cols=117 Identities=16% Similarity=0.050 Sum_probs=55.6
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcc
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (342)
+..|+=+++.|.+|.|||..++-.+...... .+..++++..- .-..|+...+-... .++....+..+.-.
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~-------~~~~v~~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~~~l~ 283 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMD-------QDKPVLIFSLE-MPAEQLMMRMLASL--SRVDQTKIRTGQLD 283 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHh-------CCCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHHhcCCCC
Confidence 3345667888999999997543333332222 14557777653 33445554443321 22222222222222
Q ss_pred hhhHH-------hhcCCCcEEEe-----ChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 141 GPQIR-------DLRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 141 ~~~~~-------~~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
..++. .+.....+.|- |...+.............+++||||-.|.+.
T Consensus 284 ~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 284 DEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 22221 22122344442 3344433222211111247899999999874
No 447
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=94.36 E-value=0.12 Score=49.68 Aligned_cols=71 Identities=23% Similarity=0.172 Sum_probs=54.4
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
.|++-|++++... ....+|.++.|+|||.+..--+...+....-. ...++.++-|+..+.++.+.+.....
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~----p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVD----PEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcC----hHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788999999764 67799999999999998665555554442211 23599999999999999999888765
No 448
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=94.34 E-value=0.21 Score=47.08 Aligned_cols=72 Identities=18% Similarity=-0.014 Sum_probs=52.3
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
.+..-|+.+.....+.+-.++++|+|+|||++.+.+ +..+..+..... ....++++|-|...+.|....+..
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlka-v~tLL~n~s~~~-~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKA-VDTLLLNSSGYT-EPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceeehHHH-HHHHHhcccccc-cccceeeeehhhHHHHHHHHHHHh
Confidence 455679999988888888999999999999986654 444433321111 144689999999999998776654
No 449
>PRK04328 hypothetical protein; Provisional
Probab=94.34 E-value=0.084 Score=43.91 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=34.4
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|..+++.|++|+|||..++-.+...+.. +.++++++- .+-..+..+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis~-ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVAL-EEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEEe-eCCHHHHHHHHHHcC
Confidence 45678999999999997544434443333 556777764 344456666776664
No 450
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.29 E-value=0.067 Score=47.69 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=35.5
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
++++.||||+|||..++++.+... ...++|+=|.-++...+....+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHH
Confidence 478999999999998877655432 34588888998888776666554
No 451
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.27 Score=44.53 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhhH-------HHHhcC-----CCEEEEcCCCCchhhHhHH
Q 019359 32 ANFPDYCLEVIAKLGFVEPTPIQAQGW-------PMALKG-----RDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 32 ~~~~~~~~~~l~~~~~~~l~~~Q~~~~-------~~~~~~-----~~~l~~~~tG~GKT~~~~~ 83 (342)
+|.+++..+.....|.....+.-.+++ ...... -++++.||.|+|||..++-
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~ 557 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAK 557 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHH
Confidence 466666666555555544333333332 222221 3689999999999965433
No 452
>PRK07004 replicative DNA helicase; Provisional
Probab=94.25 E-value=0.4 Score=43.76 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=54.2
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
.|.-+++.|.+|+|||..++-.+....... +..+++++. ..-..|+...+-.. ..++....+..+.-...
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~-------~~~v~~fSl-EM~~~ql~~R~la~--~~~v~~~~i~~g~l~~~ 281 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEY-------GLPVAVFSM-EMPGTQLAMRMLGS--VGRLDQHRMRTGRLTDE 281 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHc-------CCeEEEEeC-CCCHHHHHHHHHHh--hcCCCHHHHhcCCCCHH
Confidence 345678899999999975443333222221 445677654 23334444443221 11222222222222222
Q ss_pred hH-------HhhcCCCcEEE-----eChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 143 QI-------RDLRRGVEIVI-----ATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 143 ~~-------~~~~~~~~iiv-----~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
++ ..+. ...+.| .|+..+.............+++||||-.+.+.
T Consensus 282 e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 282 DWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 22 2222 244555 24444433322211112347899999999875
No 453
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.23 E-value=0.047 Score=46.03 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.0
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
..+.++++.|+||+|||.. +..++..+... ..+++++-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc-------ccceEEeccccce
Confidence 4568899999999999975 45555555442 2457777665554
No 454
>PHA00350 putative assembly protein
Probab=94.21 E-value=0.67 Score=41.08 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhHhHH-HHHHhhhc
Q 019359 67 LIGIAETGSGKTLSYLL-PAFVHVSA 91 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~-~~~~~~~~ 91 (342)
.++.|..|+|||..++- .++.++..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 57899999999987664 34444433
No 455
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.20 E-value=0.25 Score=40.30 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=17.8
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
++.+++.||.|+|||.. +-.+...+
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 36788999999999974 33344443
No 456
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.20 E-value=0.14 Score=42.77 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=25.7
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p 108 (342)
.|.-+++.|++|+|||..++-.+...+.. +.++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEEe
Confidence 45668899999999997644434433322 556888874
No 457
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.15 E-value=0.9 Score=44.93 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHhhHHHHh----cC--CCEEEEcCCCCchhhHh
Q 019359 54 QAQGWPMAL----KG--RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 54 Q~~~~~~~~----~~--~~~l~~~~tG~GKT~~~ 81 (342)
|...+..+. ++ .+.++.||+|+|||.++
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555443 32 58999999999999753
No 458
>PF12846 AAA_10: AAA-like domain
Probab=94.13 E-value=0.066 Score=45.84 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=27.6
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
+++++.|+||+|||..+. .++..+... +..++++=|..+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDY 41 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchH
Confidence 578999999999997655 444444442 5667887665444
No 459
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.12 E-value=0.13 Score=48.31 Aligned_cols=58 Identities=21% Similarity=0.148 Sum_probs=44.2
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYG 136 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 136 (342)
+++++.||||+|||..+++|-+..+ +..++|+=|.-++...+....++. |.++..+..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfdP 216 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVWEP 216 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEeC
Confidence 5789999999999999988876653 234899999999988877777663 555555543
No 460
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.06 E-value=0.095 Score=48.14 Aligned_cols=49 Identities=29% Similarity=0.388 Sum_probs=37.5
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.++++.||||+|||..++++.+-.. ...++|.=|.-++...+....++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~----------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY----------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc----------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 4799999999999999888765331 225888899988887777666653
No 461
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.01 E-value=0.34 Score=44.51 Aligned_cols=60 Identities=17% Similarity=0.312 Sum_probs=55.1
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
.++.+||++|+++-+....+.|+..|+++..++++.+..++..++.....++.+++++|+
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 467899999999999999999999999999999999999889999999999999999995
No 462
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.01 E-value=0.43 Score=40.12 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
+++++.+|+|+|||..
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 5889999999999963
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.98 E-value=0.087 Score=41.64 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=24.7
Q ss_pred CCcHHHHhhHHH-HhcCCCEEEEcCCCCchhhH
Q 019359 49 EPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 49 ~l~~~Q~~~~~~-~~~~~~~l~~~~tG~GKT~~ 80 (342)
.+.+.|...+.. +..+..+++.||+|+|||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 455667776654 45678999999999999974
No 464
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.97 E-value=0.18 Score=43.91 Aligned_cols=63 Identities=22% Similarity=0.191 Sum_probs=38.2
Q ss_pred HHHHHHcCCCCCcHHHHhhHHHH-hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 39 LEVIAKLGFVEPTPIQAQGWPMA-LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 39 ~~~l~~~~~~~l~~~Q~~~~~~~-~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
.+.+...|+ +.+.+.+.+..+ ..+.++++.|+||+|||.. +-.++..+.. ..+++++-...++
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~--------~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAP--------DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCC--------CCcEEEECCccee
Confidence 444555554 445666666554 4467999999999999964 3333333322 3456666655555
No 465
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.042 Score=46.22 Aligned_cols=17 Identities=47% Similarity=0.599 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.|+++.||||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 57999999999999753
No 466
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.95 E-value=0.11 Score=48.65 Aligned_cols=45 Identities=38% Similarity=0.454 Sum_probs=29.4
Q ss_pred HHHcCCCCCcHHHHhhHHHHhc--CCCEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 42 IAKLGFVEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 42 l~~~~~~~l~~~Q~~~~~~~~~--~~~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
+...|+ .+.|.+.+..+.. +.-++++||||||||.+ +..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 444554 4566666665544 35678999999999986 444555553
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.92 E-value=0.092 Score=41.98 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=16.7
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhh
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
+++.||||+|||.+ +..++..+.
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhh
Confidence 68999999999975 344444443
No 468
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.88 E-value=0.2 Score=38.83 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=28.4
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
.+++.|++|||||..+...+ ... +..++++......-.++.+.+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~-~~~----------~~~~~~iat~~~~~~e~~~ri~~ 48 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLA-AQS----------GLQVLYIATAQPFDDEMAARIAH 48 (170)
T ss_pred EEEEECCCCccHHHHHHHHH-HHc----------CCCcEeCcCCCCChHHHHHHHHH
Confidence 47899999999997544332 221 22356776666555555555544
No 469
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.81 E-value=0.11 Score=43.61 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=37.2
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCC
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~ 127 (342)
..|+.+++.|++|+|||.-++-.+...+.. +.++++++- .+...++.+.+..|+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--------ge~vlyvs~-~e~~~~l~~~~~~~g~d~ 77 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--------GEPVLYVST-EESPEELLENARSFGWDL 77 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCcEEEEEe-cCCHHHHHHHHHHcCCCH
Confidence 456789999999999997544333333333 456777765 455566777777664443
No 470
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.80 E-value=0.31 Score=49.60 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=57.2
Q ss_pred cCCCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc-cccCCCCCC
Q 019359 270 MDGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV-AARGLGRIT 340 (342)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~~~Gidip~ 340 (342)
..+.+++|.+|+..-|.++++.+++. ++++..+++..+.+++..+++....|+.+|+|+|.. +...+.+.+
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~ 722 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKD 722 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhh
Confidence 35789999999999999999888753 467788999999999999999999999999999953 333344433
No 471
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.80 E-value=0.41 Score=46.70 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
.+.+++.||+|+|||..
T Consensus 487 ~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLL 503 (733)
T ss_pred CceEEEECCCCCCHHHH
Confidence 35689999999999975
No 472
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.79 E-value=1.1 Score=38.92 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=23.2
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
....++||||+|.+... -.+.+.+.++..+.....|+.|
T Consensus 109 ~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 109 SNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred cCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEe
Confidence 46789999999987443 2344444444444444445443
No 473
>PRK08006 replicative DNA helicase; Provisional
Probab=93.77 E-value=1 Score=41.22 Aligned_cols=115 Identities=17% Similarity=0.064 Sum_probs=55.9
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
.|.=+++.|.+|.|||..++-.+....... +..++|++.- .-..|+...+-... .++....+..+.-...
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~-------g~~V~~fSlE-M~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~ 292 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQ-------DKPVLIFSLE-MPGEQIMMRMLASL--SRVDQTRIRTGQLDDE 292 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEecc-CCHHHHHHHHHHHh--cCCCHHHhhcCCCCHH
Confidence 345578889999999965443333322221 4557777553 33345544443321 2223222322222222
Q ss_pred hHH-------hhcCCCcEEEe-----ChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 143 QIR-------DLRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 143 ~~~-------~~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
++. .+.....+.|- |+..+.............+++||||-.|.+.
T Consensus 293 e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 293 DWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 221 12122345542 4444443332211111247999999999874
No 474
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.73 E-value=0.6 Score=40.28 Aligned_cols=53 Identities=9% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEee
Q 019359 159 GRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (342)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 214 (342)
..+.+.+..... .....++|+|++|.|... -.+.+.+.++..+ +..+|++|..
T Consensus 110 r~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 110 REIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 334444443322 356899999999987443 2444555555554 5544444443
No 475
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.67 E-value=0.16 Score=39.77 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCC-CccEEEEEee
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP-DRQTLYWSAT 214 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~-~~~~i~~SaT 214 (342)
...+++++||...-++......+...+..+.. ..++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 45689999999987776655555555544432 3455555443
No 476
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.65 E-value=0.34 Score=48.14 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=62.5
Q ss_pred HHHhhcCCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe-cccccCCCCC
Q 019359 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAARGLGRI 339 (342)
Q Consensus 265 ~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t-~~~~~Gidip 339 (342)
.+.....++++.|.+||-=-|++-++.|++ ..+++..++.-.+.++...+++..++|+++|||+| ..++.++-+.
T Consensus 636 AFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fk 715 (1139)
T COG1197 636 AFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFK 715 (1139)
T ss_pred HHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEe
Confidence 333445688999999998777776666654 46788899999999999999999999999999999 6777777666
Q ss_pred CC
Q 019359 340 TV 341 (342)
Q Consensus 340 ~v 341 (342)
|+
T Consensus 716 dL 717 (1139)
T COG1197 716 DL 717 (1139)
T ss_pred cC
Confidence 54
No 477
>PRK08760 replicative DNA helicase; Provisional
Probab=93.58 E-value=0.61 Score=42.81 Aligned_cols=113 Identities=19% Similarity=0.112 Sum_probs=55.7
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
.|.=+++.|.+|+|||..++-.+....... +..+++++.- .-..|+...+..... ++....+..+.-...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~-------g~~V~~fSlE-Ms~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~ 297 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKS-------KKGVAVFSME-MSASQLAMRLISSNG--RINAQRLRTGALEDE 297 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhc-------CCceEEEecc-CCHHHHHHHHHHhhC--CCcHHHHhcCCCCHH
Confidence 345578889999999975443333332221 4457777553 333455555544322 222222222221222
Q ss_pred hH-------HhhcCCCcEEEe-----ChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 143 QI-------RDLRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 143 ~~-------~~~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
++ ..+. ...+.|. |++.+...+...... ..+++||||-.+.+.
T Consensus 298 e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~~-~~~~lVvIDyLql~~ 352 (476)
T PRK08760 298 DWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKRE-HDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEecHHhcC
Confidence 21 1222 2344443 445554433322111 247899999999774
No 478
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.57 E-value=0.55 Score=45.79 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.++.+++.||+|+|||..
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 457899999999999974
No 479
>PHA02535 P terminase ATPase subunit; Provisional
Probab=93.51 E-value=0.71 Score=42.81 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 33 NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 33 ~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
.+++..+..|...-...+.+||..-+..=...+.-++.-.--.|||..+..-++...... |...+++.|++..
T Consensus 122 ~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~-------G~nqiflSas~~Q 194 (581)
T PHA02535 122 DISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLT-------GRNQIFLSASKAQ 194 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhc-------CCceEEECCCHHH
Confidence 477777888877666799999999886522234444455556799987665555544432 4567999999999
Q ss_pred HHHHHHHHHHhcC
Q 019359 113 AVQIQEEALKFGS 125 (342)
Q Consensus 113 ~~q~~~~~~~~~~ 125 (342)
+.+..+.+..++.
T Consensus 195 A~~f~~yi~~~a~ 207 (581)
T PHA02535 195 AHVFKQYIIAFAR 207 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877754
No 480
>PF05729 NACHT: NACHT domain
Probab=93.51 E-value=0.35 Score=37.04 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=17.4
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
-+++.|++|+|||.. +..+...+..
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHh
Confidence 368999999999975 4444444444
No 481
>PRK13695 putative NTPase; Provisional
Probab=93.47 E-value=2.3 Score=33.07 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=13.9
Q ss_pred CEEEEcCCCCchhhHhH
Q 019359 66 DLIGIAETGSGKTLSYL 82 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~ 82 (342)
++++.|+.|+|||..+.
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 482
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.44 E-value=0.2 Score=40.87 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=35.3
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.+..+++.|++|+|||..++-.+...+.. +.++++++... -..++.+.+..++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECCC-CHHHHHHHHHHcC
Confidence 35678899999999997544334333332 55688877654 4567777777763
No 483
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.38 E-value=0.18 Score=44.08 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHHhhHHHHh---cCCCEEEEcCCCCchhhHhHHHHHHhhhc
Q 019359 53 IQAQGWPMAL---KGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (342)
Q Consensus 53 ~Q~~~~~~~~---~~~~~l~~~~tG~GKT~~~~~~~~~~~~~ 91 (342)
.-.++++.+. +|++.++.||.|+|||.. +..++..+..
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~~ 159 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL-LQQIAAAVAA 159 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 3445565544 689999999999999975 3334444433
No 484
>PRK05595 replicative DNA helicase; Provisional
Probab=93.37 E-value=0.69 Score=42.14 Aligned_cols=49 Identities=22% Similarity=0.097 Sum_probs=28.0
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
|.-+++.|.||.|||..++-.+...... .+.+++++..- .-..|+...+
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~-------~g~~vl~fSlE-ms~~~l~~R~ 249 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR-------EGKSVAIFSLE-MSKEQLAYKL 249 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH-------cCCcEEEEecC-CCHHHHHHHH
Confidence 4557789999999997544333322222 15568887664 2234444443
No 485
>PRK14701 reverse gyrase; Provisional
Probab=93.31 E-value=0.25 Score=51.91 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=53.6
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHh------CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRM------DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
.+.+++|.+|+++-+.++.+.|+. .++.+..+||+++..++...++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 467899999999999999999886 2466788999999999999999999999999999964
No 486
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=93.28 E-value=0.18 Score=51.50 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=45.0
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
-.+++++|.|..|||||.+..-.++..+...... .-.++|+++.|++-+..+...+..
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~---~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPL---DVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCC---ChhHeeeeeccHHHHHHHHHHHHH
Confidence 3567999999999999998777777777663200 134699999999999998877654
No 487
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.27 E-value=0.48 Score=46.44 Aligned_cols=18 Identities=33% Similarity=0.248 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999753
No 488
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.26 E-value=1 Score=37.14 Aligned_cols=43 Identities=23% Similarity=0.155 Sum_probs=25.1
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCC----ccCCCCceEEEEcC
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPR----LVQGEGPIVLVLAP 108 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~----~~~~~~~~vlil~p 108 (342)
-.++.||.|+|||..++-.++.-....+- .....+.+|+|+.-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 36889999999998655544432211100 01113567888883
No 489
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.22 E-value=0.91 Score=40.25 Aligned_cols=130 Identities=20% Similarity=0.184 Sum_probs=69.3
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC-cHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
+++.|=-|+|||++..- +..++... +.++++++- +.--+ ..+.++.++...++.+.....+.+..+..
T Consensus 103 ImmvGLQGsGKTTt~~K-LA~~lkk~-------~~kvllVaaD~~RpA--A~eQL~~La~q~~v~~f~~~~~~~Pv~Ia- 171 (451)
T COG0541 103 ILMVGLQGSGKTTTAGK-LAKYLKKK-------GKKVLLVAADTYRPA--AIEQLKQLAEQVGVPFFGSGTEKDPVEIA- 171 (451)
T ss_pred EEEEeccCCChHhHHHH-HHHHHHHc-------CCceEEEecccCChH--HHHHHHHHHHHcCCceecCCCCCCHHHHH-
Confidence 67888999999987544 33333332 556666653 21111 12344444445566654431111111110
Q ss_pred hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhh-cCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHH
Q 019359 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML-DMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLAR 224 (342)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 224 (342)
.+-+.... ...+|++|||=|-++. +...-..+..+.....++--++.+-|+...+....+.
T Consensus 172 ----------------k~al~~ak--~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~ 233 (451)
T COG0541 172 ----------------KAALEKAK--EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK 233 (451)
T ss_pred ----------------HHHHHHHH--HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH
Confidence 11122111 1347889999887653 3334566667777777777677777776665544444
Q ss_pred H
Q 019359 225 Q 225 (342)
Q Consensus 225 ~ 225 (342)
.
T Consensus 234 a 234 (451)
T COG0541 234 A 234 (451)
T ss_pred H
Confidence 3
No 490
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.19 E-value=0.16 Score=44.42 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=26.7
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
.+..+++.||||+|||.+ +..++..+... .+.+++.+-...+.
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 356789999999999975 44444444322 13456666554443
No 491
>CHL00176 ftsH cell division protein; Validated
Probab=93.17 E-value=0.7 Score=43.96 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.7
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
+++++.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999753
No 492
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.16 E-value=0.22 Score=47.19 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=25.9
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEee
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 214 (342)
.+-+++|+||.=.-++......+...+..+..++.+|..|--
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr 538 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 346788888888777766555555555555444555555543
No 493
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=93.09 E-value=0.14 Score=49.66 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=52.9
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
...++-|.+++..-+..+...+.+|+|+|||-++.- ++.-+..+.. ..+++|++++..-.+|..+.+.+.
T Consensus 737 v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn~p-----~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 737 VKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHNSP-----NQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred hccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhcCC-----CcceEEEEecccchhHHHHHHHhc
Confidence 355778888887766678899999999999987544 3444433322 678999999999989988877664
No 494
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=2 Score=37.96 Aligned_cols=95 Identities=21% Similarity=0.289 Sum_probs=59.7
Q ss_pred hHHHHhcC-----CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEE
Q 019359 57 GWPMALKG-----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRS 131 (342)
Q Consensus 57 ~~~~~~~~-----~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~ 131 (342)
-++.++-| .-+++-+.+|.|||.. ++-+.+.+... + ++||++--.++ .|+.-...++....
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTL-LLQva~~lA~~-------~-~vLYVsGEES~-~QiklRA~RL~~~~---- 146 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTL-LLQVAARLAKR-------G-KVLYVSGEESL-QQIKLRADRLGLPT---- 146 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHH-HHHHHHHHHhc-------C-cEEEEeCCcCH-HHHHHHHHHhCCCc----
Confidence 34555543 4578889999999975 44444554442 3 69998875554 78888888864321
Q ss_pred EEEecCCcchhhHHhhcCCCcEEE---eChHHHHHHHhccccCCCCccEEEEeccchhhcC
Q 019359 132 TCIYGGAPKGPQIRDLRRGVEIVI---ATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM 189 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv---~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~ 189 (342)
.++.+ +..+.+...+.. .+.+++|+|-.+.+..+
T Consensus 147 -------------------~~l~l~aEt~~e~I~~~l~~-----~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 147 -------------------NNLYLLAETNLEDIIAELEQ-----EKPDLVVIDSIQTLYSE 183 (456)
T ss_pred -------------------cceEEehhcCHHHHHHHHHh-----cCCCEEEEeccceeecc
Confidence 11222 334445555554 34789999999987543
No 495
>PRK05636 replicative DNA helicase; Provisional
Probab=93.00 E-value=0.68 Score=42.73 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCCchhhHhH
Q 019359 64 GRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~ 82 (342)
|.=+++.|.+|+|||..++
T Consensus 265 G~Liiiaarpg~GKT~~al 283 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLAL 283 (505)
T ss_pred CceEEEEeCCCCCHHHHHH
Confidence 3446788999999997544
No 496
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.98 E-value=0.8 Score=42.43 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
.+++++.||+|+|||..
T Consensus 88 ~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35799999999999975
No 497
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.98 E-value=0.11 Score=37.75 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=26.3
Q ss_pred HHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHH
Q 019359 58 WPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (342)
Q Consensus 58 ~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~ 113 (342)
...+..+.-+++.|+.|+|||. +.-.++..+... --|-.||-.++
T Consensus 9 ~~~l~~g~vi~L~GdLGaGKTt-f~r~l~~~lg~~----------~~V~SPTF~l~ 53 (123)
T PF02367_consen 9 AQILKPGDVILLSGDLGAGKTT-FVRGLARALGID----------EEVTSPTFSLV 53 (123)
T ss_dssp HHHHSS-EEEEEEESTTSSHHH-HHHHHHHHTT------------S----TTTTSE
T ss_pred HHhCCCCCEEEEECCCCCCHHH-HHHHHHHHcCCC----------CCcCCCCeEEE
Confidence 3444556678899999999995 565566555322 25667877665
No 498
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.48 Score=42.16 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=14.1
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
+..|+.+|.|+|||..
T Consensus 187 rglLLfGPpgtGKtmL 202 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTML 202 (428)
T ss_pred chhheecCCCCchHHH
Confidence 5788999999999975
No 499
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.94 E-value=0.24 Score=47.98 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=17.0
Q ss_pred HhcCCCEEEEcCCCCchhh
Q 019359 61 ALKGRDLIGIAETGSGKTL 79 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~ 79 (342)
+.+|+.+.+.|++|+|||.
T Consensus 488 i~~G~~iaIvG~sGsGKST 506 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKST 506 (694)
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 4578999999999999996
No 500
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.93 E-value=0.19 Score=43.30 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=17.1
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..+.++++.||||+|||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44678999999999999974
Done!