Query 019359
Match_columns 342
No_of_seqs 143 out of 1443
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 14:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.6E-52 5.4E-57 375.4 39.2 326 14-342 43-370 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 6.7E-50 2.3E-54 358.1 36.1 327 15-342 3-346 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.5E-49 8.5E-54 353.6 33.3 318 19-342 29-346 (410)
4 1xti_A Probable ATP-dependent 100.0 1.3E-47 4.6E-52 340.4 33.9 310 27-342 8-320 (391)
5 3eiq_A Eukaryotic initiation f 100.0 5E-48 1.7E-52 345.7 30.9 318 19-342 32-350 (414)
6 1s2m_A Putative ATP-dependent 100.0 2E-47 6.7E-52 340.3 33.0 312 23-342 17-328 (400)
7 3pey_A ATP-dependent RNA helic 100.0 4.5E-47 1.5E-51 337.4 33.1 308 25-342 3-313 (395)
8 3fht_A ATP-dependent RNA helic 100.0 1.9E-46 6.6E-51 335.2 35.7 315 19-342 17-336 (412)
9 1fuu_A Yeast initiation factor 100.0 5.7E-48 2E-52 343.1 21.9 315 21-342 15-329 (394)
10 1hv8_A Putative ATP-dependent 100.0 5.9E-46 2E-50 327.0 33.9 303 26-342 5-308 (367)
11 3fmp_B ATP-dependent RNA helic 100.0 7.5E-46 2.6E-50 337.1 22.8 308 26-342 91-403 (479)
12 3sqw_A ATP-dependent RNA helic 100.0 9.1E-45 3.1E-49 336.7 29.6 321 21-342 11-361 (579)
13 2z0m_A 337AA long hypothetical 100.0 3.1E-43 1.1E-47 306.1 32.4 286 34-342 1-286 (337)
14 3i5x_A ATP-dependent RNA helic 100.0 5.9E-44 2E-48 331.0 29.0 308 34-342 79-412 (563)
15 3fho_A ATP-dependent RNA helic 100.0 6.1E-45 2.1E-49 332.2 20.9 310 23-342 115-427 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 4.1E-43 1.4E-47 323.1 29.8 299 26-342 18-337 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 4.6E-42 1.6E-46 313.1 28.8 294 26-342 1-306 (523)
18 3fe2_A Probable ATP-dependent 100.0 4.7E-41 1.6E-45 278.0 24.7 238 1-238 3-240 (242)
19 2va8_A SSO2462, SKI2-type heli 100.0 8.7E-40 3E-44 310.6 30.2 301 24-342 5-358 (715)
20 2zj8_A DNA helicase, putative 100.0 1.8E-40 6.3E-45 315.1 24.8 299 27-342 1-340 (720)
21 2p6r_A Afuhel308 helicase; pro 100.0 2.8E-40 9.7E-45 312.9 23.0 297 28-342 2-342 (702)
22 3oiy_A Reverse gyrase helicase 100.0 7.8E-40 2.7E-44 292.3 22.4 277 38-342 10-322 (414)
23 2ykg_A Probable ATP-dependent 100.0 1.2E-39 4.2E-44 309.5 20.9 301 39-342 3-481 (696)
24 4a2p_A RIG-I, retinoic acid in 100.0 5.6E-39 1.9E-43 297.6 21.8 294 46-342 4-473 (556)
25 3l9o_A ATP-dependent RNA helic 100.0 7.1E-39 2.4E-43 312.4 22.1 295 28-342 163-550 (1108)
26 3tbk_A RIG-I helicase domain; 100.0 8.5E-38 2.9E-42 289.7 25.2 291 49-342 4-472 (555)
27 1wp9_A ATP-dependent RNA helic 100.0 7.4E-37 2.5E-41 279.0 29.9 284 49-342 9-439 (494)
28 4a2q_A RIG-I, retinoic acid in 100.0 2.7E-37 9.2E-42 296.1 26.9 296 44-342 243-714 (797)
29 2xgj_A ATP-dependent RNA helic 100.0 1.6E-36 5.5E-41 293.5 30.7 277 42-342 80-452 (1010)
30 4ddu_A Reverse gyrase; topoiso 100.0 6E-37 2E-41 298.9 25.7 271 44-342 74-379 (1104)
31 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-36 4.6E-41 294.2 26.1 296 44-342 243-714 (936)
32 3iuy_A Probable ATP-dependent 100.0 1.6E-36 5.5E-41 248.8 22.6 216 18-234 10-227 (228)
33 3bor_A Human initiation factor 100.0 1.7E-36 5.7E-41 249.9 21.5 212 19-235 22-234 (237)
34 1q0u_A Bstdead; DEAD protein, 100.0 1.9E-36 6.3E-41 246.8 21.2 208 25-237 2-213 (219)
35 1vec_A ATP-dependent RNA helic 100.0 7.7E-36 2.6E-40 241.0 24.4 202 27-233 3-205 (206)
36 4gl2_A Interferon-induced heli 100.0 1.5E-37 5.2E-42 295.2 16.1 291 49-342 7-484 (699)
37 4a4z_A Antiviral helicase SKI2 100.0 4.7E-36 1.6E-40 290.3 25.9 278 44-341 35-444 (997)
38 3ber_A Probable ATP-dependent 100.0 4.8E-36 1.7E-40 248.5 22.2 208 23-235 39-247 (249)
39 2oxc_A Probable ATP-dependent 100.0 6.1E-36 2.1E-40 245.4 22.5 211 19-235 16-228 (230)
40 1wrb_A DJVLGB; RNA helicase, D 100.0 3.7E-36 1.3E-40 250.5 21.5 227 12-238 6-242 (253)
41 1qde_A EIF4A, translation init 100.0 1E-35 3.4E-40 243.5 23.4 212 20-237 7-218 (224)
42 2pl3_A Probable ATP-dependent 100.0 1.8E-35 6.1E-40 243.9 24.6 227 3-236 6-233 (236)
43 2eyq_A TRCF, transcription-rep 100.0 4.9E-35 1.7E-39 287.1 29.7 285 33-342 587-884 (1151)
44 3dkp_A Probable ATP-dependent 100.0 1.4E-35 4.9E-40 245.8 21.7 229 5-237 3-242 (245)
45 1gm5_A RECG; helicase, replica 100.0 3.2E-36 1.1E-40 283.1 19.7 282 36-342 356-659 (780)
46 2oca_A DAR protein, ATP-depend 100.0 2.9E-36 9.8E-41 276.3 17.6 275 49-342 113-418 (510)
47 2gxq_A Heat resistant RNA depe 100.0 8.7E-35 3E-39 235.0 23.6 204 28-235 2-205 (207)
48 1t6n_A Probable ATP-dependent 100.0 5E-35 1.7E-39 238.6 21.5 211 19-234 6-219 (220)
49 1gku_B Reverse gyrase, TOP-RG; 100.0 4.1E-36 1.4E-40 293.1 15.4 270 42-341 51-342 (1054)
50 3fmo_B ATP-dependent RNA helic 100.0 2.3E-34 7.9E-39 244.4 24.0 213 16-236 78-298 (300)
51 3ly5_A ATP-dependent RNA helic 100.0 1.9E-34 6.4E-39 240.8 20.9 203 28-231 53-258 (262)
52 1tf5_A Preprotein translocase 100.0 6.8E-34 2.3E-38 262.8 26.6 281 44-339 79-497 (844)
53 4f92_B U5 small nuclear ribonu 100.0 7.8E-34 2.7E-38 286.1 27.8 295 34-341 911-1258(1724)
54 4f92_B U5 small nuclear ribonu 100.0 7.5E-34 2.5E-38 286.3 26.4 299 34-341 66-423 (1724)
55 2fwr_A DNA repair protein RAD2 100.0 7.7E-35 2.6E-39 264.3 14.5 256 49-342 93-414 (472)
56 2fsf_A Preprotein translocase 100.0 4.4E-32 1.5E-36 250.2 25.0 282 44-340 70-507 (853)
57 1nkt_A Preprotein translocase 100.0 8.3E-32 2.8E-36 248.7 26.2 283 44-341 107-527 (922)
58 3h1t_A Type I site-specific re 100.0 9.5E-33 3.3E-37 256.9 18.0 279 49-342 178-519 (590)
59 2jlq_A Serine protease subunit 100.0 5.5E-32 1.9E-36 242.8 13.3 250 46-340 1-252 (451)
60 2xau_A PRE-mRNA-splicing facto 100.0 1.1E-30 3.6E-35 247.2 21.3 298 24-342 69-389 (773)
61 2whx_A Serine protease/ntpase/ 100.0 2E-31 6.8E-36 246.2 12.2 250 47-341 169-419 (618)
62 2v6i_A RNA helicase; membrane, 100.0 1.1E-30 3.7E-35 233.0 16.4 233 63-339 1-234 (431)
63 3o8b_A HCV NS3 protease/helica 100.0 1E-30 3.4E-35 239.6 13.3 240 49-342 217-458 (666)
64 3dmq_A RNA polymerase-associat 100.0 4.9E-30 1.7E-34 248.8 18.5 284 48-342 152-576 (968)
65 1z63_A Helicase of the SNF2/RA 100.0 2.3E-29 7.8E-34 229.9 22.0 273 49-342 37-414 (500)
66 1yks_A Genome polyprotein [con 100.0 5.6E-32 1.9E-36 241.7 4.1 229 60-342 4-242 (440)
67 2wv9_A Flavivirin protease NS2 100.0 4.9E-31 1.7E-35 245.1 9.9 255 42-342 203-475 (673)
68 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3.5E-29 1.2E-33 241.3 22.2 276 49-341 271-668 (1038)
69 2z83_A Helicase/nucleoside tri 100.0 4.2E-30 1.4E-34 231.0 8.7 234 59-340 16-254 (459)
70 3mwy_W Chromo domain-containin 100.0 1.4E-27 4.7E-32 228.4 23.9 321 3-342 193-645 (800)
71 3rc3_A ATP-dependent RNA helic 100.0 3.4E-27 1.2E-31 218.7 20.1 246 52-342 143-391 (677)
72 1z3i_X Similar to RAD54-like; 100.0 3.3E-26 1.1E-30 213.8 25.8 286 49-342 55-489 (644)
73 3jux_A Protein translocase sub 99.9 1.8E-23 6.3E-28 189.5 29.5 277 45-339 72-539 (822)
74 2ipc_A Preprotein translocase 99.9 1.1E-23 3.8E-28 194.4 26.8 131 44-187 75-215 (997)
75 3b6e_A Interferon-induced heli 99.9 1.8E-25 6.3E-30 181.5 11.0 167 45-214 29-216 (216)
76 1rif_A DAR protein, DNA helica 99.9 1.1E-25 3.9E-30 190.0 9.3 195 4-219 66-266 (282)
77 3crv_A XPD/RAD3 related DNA he 99.9 5.3E-20 1.8E-24 169.1 27.4 131 46-188 1-187 (551)
78 2vl7_A XPD; helicase, unknown 99.9 1.6E-21 5.3E-26 178.6 14.9 126 45-186 4-187 (540)
79 3llm_A ATP-dependent RNA helic 99.9 5.1E-21 1.8E-25 156.9 16.1 175 42-230 54-231 (235)
80 1c4o_A DNA nucleotide excision 99.9 2.3E-20 7.9E-25 174.2 21.1 130 204-342 379-509 (664)
81 2fz4_A DNA repair protein RAD2 99.9 2.4E-21 8.3E-26 158.6 12.8 138 49-218 93-231 (237)
82 2d7d_A Uvrabc system protein B 99.8 5E-19 1.7E-23 165.2 19.6 130 204-342 385-515 (661)
83 4a15_A XPD helicase, ATP-depen 99.8 2.1E-18 7.3E-23 159.6 17.6 80 49-135 3-86 (620)
84 2hjv_A ATP-dependent RNA helic 99.6 3.2E-15 1.1E-19 115.1 13.3 98 244-342 8-105 (163)
85 2p6n_A ATP-dependent RNA helic 99.6 1.6E-15 5.3E-20 119.6 10.6 116 224-342 9-124 (191)
86 1t5i_A C_terminal domain of A 99.6 3.7E-15 1.3E-19 115.6 12.4 97 245-342 5-101 (172)
87 2jgn_A DBX, DDX3, ATP-dependen 99.6 2.2E-15 7.6E-20 118.2 10.4 100 243-342 17-116 (185)
88 1fuk_A Eukaryotic initiation f 99.6 1E-14 3.4E-19 112.5 13.2 96 246-342 4-100 (165)
89 2rb4_A ATP-dependent RNA helic 99.6 7.7E-15 2.6E-19 114.3 11.4 97 245-342 7-104 (175)
90 3eaq_A Heat resistant RNA depe 99.6 2.4E-14 8.1E-19 115.0 11.7 96 246-342 6-101 (212)
91 3i32_A Heat resistant RNA depe 99.5 8.4E-14 2.9E-18 117.1 11.7 96 246-342 3-98 (300)
92 2yjt_D ATP-dependent RNA helic 99.2 7.4E-15 2.5E-19 113.9 0.0 93 249-342 7-100 (170)
93 1z5z_A Helicase of the SNF2/RA 99.1 2.1E-10 7.2E-15 95.2 9.6 90 253-342 92-185 (271)
94 1w36_D RECD, exodeoxyribonucle 99.0 1.2E-09 4.3E-14 101.1 9.3 146 51-214 151-298 (608)
95 3lfu_A DNA helicase II; SF1 he 98.8 7.6E-07 2.6E-11 83.7 21.2 82 48-135 8-91 (647)
96 4b3f_X DNA-binding protein smu 98.8 1.6E-08 5.4E-13 94.8 8.8 67 49-123 189-256 (646)
97 3e1s_A Exodeoxyribonuclease V, 98.7 8.6E-08 2.9E-12 88.0 12.7 125 49-212 189-313 (574)
98 3upu_A ATP-dependent DNA helic 98.7 8.4E-08 2.9E-12 86.1 11.5 71 43-120 19-94 (459)
99 2gk6_A Regulator of nonsense t 98.7 3.1E-07 1E-11 85.6 14.9 70 47-123 178-247 (624)
100 2xzl_A ATP-dependent helicase 98.6 5.3E-07 1.8E-11 85.9 13.7 69 48-123 359-427 (802)
101 2wjy_A Regulator of nonsense t 98.6 8.2E-07 2.8E-11 84.5 14.2 69 48-123 355-423 (800)
102 3vkw_A Replicase large subunit 97.8 0.00011 3.9E-09 64.3 9.9 84 66-186 163-246 (446)
103 2o0j_A Terminase, DNA packagin 97.7 0.00052 1.8E-08 59.3 13.3 70 49-124 163-232 (385)
104 1xx6_A Thymidine kinase; NESG, 97.7 0.00013 4.6E-09 56.7 8.5 39 64-110 8-46 (191)
105 2b8t_A Thymidine kinase; deoxy 97.7 7.8E-05 2.7E-09 59.4 7.4 91 63-186 11-101 (223)
106 3cpe_A Terminase, DNA packagin 97.7 0.00062 2.1E-08 62.9 14.3 72 49-126 163-234 (592)
107 2orw_A Thymidine kinase; TMTK, 97.7 7.3E-05 2.5E-09 58.0 6.6 40 63-110 2-41 (184)
108 2j9r_A Thymidine kinase; TK1, 97.6 0.00013 4.3E-09 57.4 6.8 39 65-111 29-67 (214)
109 3ec2_A DNA replication protein 97.5 0.00053 1.8E-08 52.8 8.4 19 63-81 37-55 (180)
110 1uaa_A REP helicase, protein ( 97.4 0.00022 7.6E-09 67.1 7.1 81 49-135 2-85 (673)
111 2orv_A Thymidine kinase; TP4A 97.4 0.0003 1E-08 55.8 6.2 40 64-111 19-58 (234)
112 1pjr_A PCRA; DNA repair, DNA r 97.3 0.00042 1.4E-08 65.7 7.8 82 48-135 10-93 (724)
113 2zpa_A Uncharacterized protein 97.3 0.001 3.5E-08 61.4 9.2 113 49-216 175-289 (671)
114 1l8q_A Chromosomal replication 97.2 0.0028 9.6E-08 53.8 10.6 18 64-81 37-54 (324)
115 2kjq_A DNAA-related protein; s 97.2 0.00046 1.6E-08 51.4 5.0 18 63-80 35-52 (149)
116 3e2i_A Thymidine kinase; Zn-bi 97.1 0.00068 2.3E-08 53.1 5.8 40 64-111 28-67 (219)
117 3u4q_A ATP-dependent helicase/ 97.1 0.00085 2.9E-08 67.4 7.6 70 49-122 10-79 (1232)
118 3te6_A Regulatory protein SIR3 97.1 0.004 1.4E-07 52.4 10.4 26 64-90 45-70 (318)
119 1w4r_A Thymidine kinase; type 97.1 0.001 3.6E-08 51.3 6.2 38 64-109 20-57 (195)
120 1a5t_A Delta prime, HOLB; zinc 96.9 0.0022 7.7E-08 54.7 7.8 40 50-90 3-49 (334)
121 2p65_A Hypothetical protein PF 96.9 0.0086 2.9E-07 45.9 10.4 18 64-81 43-60 (187)
122 1g5t_A COB(I)alamin adenosyltr 96.9 0.0083 2.8E-07 46.4 9.6 138 64-220 28-168 (196)
123 2chg_A Replication factor C sm 96.8 0.011 3.9E-07 46.6 10.8 41 173-214 101-141 (226)
124 2w58_A DNAI, primosome compone 96.8 0.0083 2.9E-07 46.9 9.4 24 65-89 55-78 (202)
125 3h4m_A Proteasome-activating n 96.8 0.0095 3.2E-07 49.4 10.2 57 23-81 10-68 (285)
126 3kl4_A SRP54, signal recogniti 96.8 0.0095 3.2E-07 52.4 10.4 53 173-225 178-233 (433)
127 2z4s_A Chromosomal replication 96.7 0.0099 3.4E-07 52.7 10.6 17 65-81 131-147 (440)
128 2v1u_A Cell division control p 96.7 0.012 4E-07 51.1 10.9 18 64-81 44-61 (387)
129 3co5_A Putative two-component 96.7 0.0028 9.6E-08 46.7 5.8 19 62-80 25-43 (143)
130 1d2n_A N-ethylmaleimide-sensit 96.7 0.017 5.8E-07 47.6 11.2 18 65-82 65-82 (272)
131 3u61_B DNA polymerase accessor 96.7 0.0023 7.9E-08 54.3 5.6 40 174-213 105-144 (324)
132 1jbk_A CLPB protein; beta barr 96.6 0.026 9.1E-07 43.2 11.2 18 64-81 43-60 (195)
133 3bos_A Putative DNA replicatio 96.6 0.0045 1.6E-07 49.8 6.9 19 63-81 51-69 (242)
134 3dm5_A SRP54, signal recogniti 96.4 0.028 9.5E-07 49.5 11.0 56 66-132 102-159 (443)
135 2qgz_A Helicase loader, putati 96.4 0.0037 1.3E-07 52.6 5.1 20 64-83 152-171 (308)
136 2qby_B CDC6 homolog 3, cell di 96.3 0.018 6.2E-07 49.9 9.3 18 64-81 45-62 (384)
137 1fnn_A CDC6P, cell division co 96.3 0.0096 3.3E-07 51.7 7.4 16 66-81 46-61 (389)
138 4b4t_J 26S protease regulatory 96.1 0.06 2E-06 46.7 11.3 17 64-80 182-198 (405)
139 1iqp_A RFCS; clamp loader, ext 96.1 0.021 7E-07 48.3 8.4 40 173-213 109-148 (327)
140 3eie_A Vacuolar protein sortin 96.1 0.015 5E-07 49.3 7.4 56 23-81 11-68 (322)
141 3syl_A Protein CBBX; photosynt 96.1 0.016 5.6E-07 48.6 7.6 17 65-81 68-84 (309)
142 3cf0_A Transitional endoplasmi 96.1 0.019 6.5E-07 48.1 7.9 55 24-81 9-66 (301)
143 2qby_A CDC6 homolog 1, cell di 96.1 0.028 9.7E-07 48.6 9.3 18 64-81 45-62 (386)
144 1njg_A DNA polymerase III subu 96.0 0.07 2.4E-06 42.5 10.7 16 66-81 47-62 (250)
145 1sxj_D Activator 1 41 kDa subu 95.9 0.018 6.2E-07 49.3 7.4 40 174-214 133-172 (353)
146 1jr3_A DNA polymerase III subu 95.9 0.084 2.9E-06 45.4 11.4 16 66-81 40-55 (373)
147 3oiy_A Reverse gyrase helicase 95.9 0.037 1.3E-06 48.6 9.3 61 270-330 62-125 (414)
148 2dr3_A UPF0273 protein PH0284; 95.8 0.035 1.2E-06 44.7 8.0 53 62-123 21-73 (247)
149 3pfi_A Holliday junction ATP-d 95.7 0.059 2E-06 45.8 9.5 17 65-81 56-72 (338)
150 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.083 2.8E-06 42.9 10.0 18 64-81 39-56 (262)
151 1sxj_E Activator 1 40 kDa subu 95.6 0.034 1.2E-06 47.6 7.9 43 173-216 133-175 (354)
152 2gno_A DNA polymerase III, gam 95.6 0.049 1.7E-06 45.6 8.6 39 173-212 81-119 (305)
153 1gm5_A RECG; helicase, replica 95.6 0.039 1.3E-06 52.5 8.8 70 271-340 416-490 (780)
154 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.089 3.1E-06 41.8 9.9 22 61-82 20-41 (235)
155 3pvs_A Replication-associated 95.5 0.044 1.5E-06 48.6 8.2 17 65-81 51-67 (447)
156 1sxj_C Activator 1 40 kDa subu 95.5 0.055 1.9E-06 46.1 8.6 39 173-212 109-147 (340)
157 2qp9_X Vacuolar protein sortin 95.2 0.091 3.1E-06 45.1 9.2 18 64-81 84-101 (355)
158 1sxj_A Activator 1 95 kDa subu 95.2 0.056 1.9E-06 49.0 8.0 40 174-215 148-189 (516)
159 1sxj_B Activator 1 37 kDa subu 95.0 0.07 2.4E-06 44.9 7.6 39 174-213 107-145 (323)
160 2zan_A Vacuolar protein sortin 95.0 0.058 2E-06 47.8 7.4 18 64-81 167-184 (444)
161 3hjh_A Transcription-repair-co 94.9 0.14 4.7E-06 45.8 9.6 67 260-340 372-438 (483)
162 1hqc_A RUVB; extended AAA-ATPa 94.8 0.11 3.8E-06 43.7 8.4 18 64-81 38-55 (324)
163 2r6a_A DNAB helicase, replicat 94.7 0.087 3E-06 46.9 7.8 40 63-109 202-241 (454)
164 4a1f_A DNAB helicase, replicat 94.7 0.038 1.3E-06 46.9 5.1 50 62-120 44-93 (338)
165 4ddu_A Reverse gyrase; topoiso 94.6 0.13 4.3E-06 51.2 9.1 61 270-330 119-182 (1104)
166 2q6t_A DNAB replication FORK h 94.5 0.094 3.2E-06 46.5 7.6 40 63-109 199-238 (444)
167 1w5s_A Origin recognition comp 94.4 0.082 2.8E-06 46.2 7.0 17 65-81 51-69 (412)
168 4b4t_M 26S protease regulatory 94.3 0.036 1.2E-06 48.7 4.2 55 23-80 174-231 (434)
169 3hu3_A Transitional endoplasmi 94.0 0.26 8.9E-06 44.2 9.3 18 64-81 238-255 (489)
170 1n0w_A DNA repair protein RAD5 94.0 0.2 6.8E-06 40.0 8.0 22 63-84 23-44 (243)
171 3cmu_A Protein RECA, recombina 94.0 0.12 4.1E-06 53.9 7.8 42 63-112 1426-1467(2050)
172 1oyw_A RECQ helicase, ATP-depe 93.9 0.38 1.3E-05 43.6 10.4 61 270-330 63-123 (523)
173 2fna_A Conserved hypothetical 93.9 2.5 8.7E-05 35.6 15.2 16 65-80 31-46 (357)
174 2ehv_A Hypothetical protein PH 93.8 0.1 3.5E-06 42.0 5.9 22 61-82 27-48 (251)
175 3n70_A Transport activator; si 93.7 0.051 1.7E-06 39.9 3.6 20 62-81 22-41 (145)
176 2v1x_A ATP-dependent DNA helic 93.7 0.21 7.3E-06 46.0 8.4 60 271-330 83-144 (591)
177 3hgt_A HDA1 complex subunit 3; 93.6 0.24 8.2E-06 41.4 7.7 80 255-339 107-187 (328)
178 1nlf_A Regulatory protein REPA 93.4 0.38 1.3E-05 39.5 8.7 24 60-83 26-49 (279)
179 1qvr_A CLPB protein; coiled co 93.3 0.3 1E-05 47.2 8.9 17 65-81 192-208 (854)
180 2l8b_A Protein TRAI, DNA helic 93.2 0.098 3.4E-06 39.6 4.2 58 51-115 36-95 (189)
181 3m6a_A ATP-dependent protease 92.9 0.18 6.1E-06 46.0 6.5 17 64-80 108-124 (543)
182 1ls1_A Signal recognition part 92.7 1.1 3.6E-05 37.3 10.4 20 64-83 98-117 (295)
183 2oap_1 GSPE-2, type II secreti 92.6 0.14 4.7E-06 46.2 5.2 39 40-80 237-276 (511)
184 2eyq_A TRCF, transcription-rep 92.4 0.5 1.7E-05 47.2 9.4 92 249-340 628-725 (1151)
185 1w36_B RECB, exodeoxyribonucle 92.3 0.28 9.5E-06 49.3 7.5 58 65-122 17-78 (1180)
186 4b4t_L 26S protease subunit RP 92.2 0.096 3.3E-06 46.0 3.6 18 64-81 215-232 (437)
187 3cf2_A TER ATPase, transitiona 92.1 0.29 1E-05 46.5 7.0 16 65-80 239-254 (806)
188 3io5_A Recombination and repai 92.1 0.27 9.1E-06 41.1 5.9 49 66-123 30-78 (333)
189 4b4t_H 26S protease regulatory 92.0 0.14 4.9E-06 45.0 4.4 55 24-80 203-259 (467)
190 4b4t_K 26S protease regulatory 91.6 0.14 4.8E-06 44.9 3.9 17 64-80 206-222 (428)
191 1p9r_A General secretion pathw 91.6 0.26 9.1E-06 43.1 5.6 37 52-89 153-191 (418)
192 3b85_A Phosphate starvation-in 91.3 0.24 8.2E-06 38.8 4.6 31 50-80 8-38 (208)
193 1r6b_X CLPA protein; AAA+, N-t 91.2 1.6 5.5E-05 41.5 11.1 18 64-81 207-224 (758)
194 3ber_A Probable ATP-dependent 91.1 0.86 3E-05 36.6 8.0 55 272-330 111-169 (249)
195 1t6n_A Probable ATP-dependent 91.0 0.69 2.3E-05 36.3 7.2 56 272-330 82-142 (220)
196 4b4t_I 26S protease regulatory 91.0 0.17 5.9E-06 44.1 3.8 56 23-81 175-233 (437)
197 2l82_A Designed protein OR32; 90.8 0.93 3.2E-05 30.4 6.3 46 275-320 5-50 (162)
198 2hjv_A ATP-dependent RNA helic 90.6 1.5 5E-05 32.5 8.4 73 100-182 35-111 (163)
199 3e70_C DPA, signal recognition 90.4 3.8 0.00013 34.5 11.5 52 174-225 211-263 (328)
200 3gk5_A Uncharacterized rhodane 90.1 0.4 1.4E-05 32.9 4.4 45 263-307 46-90 (108)
201 1u0j_A DNA replication protein 89.9 0.57 1.9E-05 38.1 5.7 47 34-82 71-122 (267)
202 1e9r_A Conjugal transfer prote 89.9 0.33 1.1E-05 42.8 4.8 44 63-114 52-95 (437)
203 1tue_A Replication protein E1; 89.9 0.38 1.3E-05 37.4 4.5 43 37-81 29-75 (212)
204 3jvv_A Twitching mobility prot 89.6 0.35 1.2E-05 41.3 4.6 27 62-89 121-147 (356)
205 3fe2_A Probable ATP-dependent 89.5 0.98 3.4E-05 36.0 7.0 55 272-330 102-160 (242)
206 2r8r_A Sensor protein; KDPD, P 89.5 0.35 1.2E-05 38.2 4.1 24 66-89 8-31 (228)
207 1qhx_A CPT, protein (chloramph 89.5 0.16 5.4E-06 38.5 2.1 17 64-80 3-19 (178)
208 3vaa_A Shikimate kinase, SK; s 89.3 0.21 7.2E-06 38.7 2.8 21 61-81 22-42 (199)
209 2zts_A Putative uncharacterize 89.3 0.23 8E-06 39.8 3.2 53 63-123 29-81 (251)
210 2oxc_A Probable ATP-dependent 89.3 0.73 2.5E-05 36.5 6.0 54 272-330 92-150 (230)
211 2rb4_A ATP-dependent RNA helic 89.2 2.3 7.7E-05 31.9 8.5 71 100-180 34-108 (175)
212 2eyu_A Twitching motility prot 89.2 0.17 5.9E-06 41.2 2.2 20 61-80 22-41 (261)
213 3hws_A ATP-dependent CLP prote 89.1 0.71 2.4E-05 39.5 6.2 19 63-81 50-68 (363)
214 4ag6_A VIRB4 ATPase, type IV s 88.9 0.46 1.6E-05 41.3 4.9 42 63-112 34-75 (392)
215 2px0_A Flagellar biosynthesis 88.8 0.41 1.4E-05 39.8 4.3 20 64-83 105-124 (296)
216 2r44_A Uncharacterized protein 88.8 0.23 8E-06 41.9 2.9 22 59-80 41-62 (331)
217 3g5j_A Putative ATP/GTP bindin 88.8 0.78 2.7E-05 32.6 5.4 49 261-309 77-127 (134)
218 3cmw_A Protein RECA, recombina 88.8 0.88 3E-05 47.0 7.3 90 64-188 1431-1523(1706)
219 2bjv_A PSP operon transcriptio 88.7 0.32 1.1E-05 39.6 3.5 18 63-80 28-45 (265)
220 3nbx_X ATPase RAVA; AAA+ ATPas 88.6 0.22 7.5E-06 44.7 2.7 25 56-80 33-57 (500)
221 2qmh_A HPR kinase/phosphorylas 88.5 0.21 7.1E-06 38.6 2.2 18 64-81 34-51 (205)
222 2gza_A Type IV secretion syste 88.5 0.27 9.4E-06 42.2 3.2 21 60-80 171-191 (361)
223 1fuk_A Eukaryotic initiation f 88.4 2.1 7.3E-05 31.7 7.8 73 100-182 30-106 (165)
224 2p6n_A ATP-dependent RNA helic 88.4 2.2 7.5E-05 32.7 8.0 72 100-181 54-129 (191)
225 1lvg_A Guanylate kinase, GMP k 88.3 0.27 9.4E-06 38.1 2.8 18 63-80 3-20 (198)
226 2pl3_A Probable ATP-dependent 88.3 2.4 8.1E-05 33.5 8.5 55 271-330 96-154 (236)
227 3u4q_B ATP-dependent helicase/ 88.3 0.35 1.2E-05 48.5 4.2 52 253-304 318-375 (1166)
228 1ofh_A ATP-dependent HSL prote 88.3 1.1 3.7E-05 37.2 6.7 18 64-81 50-67 (310)
229 3bh0_A DNAB-like replicative h 88.2 0.45 1.6E-05 39.9 4.2 50 63-121 67-116 (315)
230 1kgd_A CASK, peripheral plasma 88.1 0.29 9.9E-06 37.2 2.8 18 63-80 4-21 (180)
231 3a8t_A Adenylate isopentenyltr 88.0 0.26 8.7E-06 41.6 2.6 18 65-82 41-58 (339)
232 3iij_A Coilin-interacting nucl 88.0 0.32 1.1E-05 36.9 2.9 20 62-81 9-28 (180)
233 3trf_A Shikimate kinase, SK; a 87.9 0.29 1E-05 37.2 2.7 19 64-82 5-23 (185)
234 1kag_A SKI, shikimate kinase I 87.8 0.35 1.2E-05 36.3 3.1 17 64-80 4-20 (173)
235 3exa_A TRNA delta(2)-isopenten 87.7 0.25 8.6E-06 41.2 2.3 18 65-82 4-21 (322)
236 3ipz_A Monothiol glutaredoxin- 87.3 3.8 0.00013 27.9 8.0 68 262-329 7-80 (109)
237 1u94_A RECA protein, recombina 87.3 0.49 1.7E-05 40.5 3.9 40 63-110 62-101 (356)
238 3tau_A Guanylate kinase, GMP k 87.2 0.35 1.2E-05 37.8 2.8 18 63-80 7-24 (208)
239 3eaq_A Heat resistant RNA depe 87.1 2.5 8.7E-05 32.9 7.8 71 100-180 31-105 (212)
240 2x8a_A Nuclear valosin-contain 87.0 0.16 5.5E-06 41.7 0.7 54 24-80 4-60 (274)
241 3tr0_A Guanylate kinase, GMP k 87.0 0.35 1.2E-05 37.5 2.7 19 62-80 5-23 (205)
242 2cvh_A DNA repair and recombin 87.0 0.53 1.8E-05 36.8 3.8 21 63-83 19-39 (220)
243 2zr9_A Protein RECA, recombina 87.0 0.49 1.7E-05 40.4 3.8 40 63-110 60-99 (349)
244 2j41_A Guanylate kinase; GMP, 86.9 0.36 1.2E-05 37.5 2.7 20 61-80 3-22 (207)
245 1zp6_A Hypothetical protein AT 86.9 0.24 8.3E-06 37.9 1.7 20 61-80 6-25 (191)
246 3b9p_A CG5977-PA, isoform A; A 86.9 0.34 1.1E-05 40.2 2.7 18 64-81 54-71 (297)
247 3lw7_A Adenylate kinase relate 86.8 0.27 9.3E-06 36.8 2.0 16 66-81 3-18 (179)
248 1c9k_A COBU, adenosylcobinamid 86.8 0.67 2.3E-05 35.2 4.1 44 67-122 2-45 (180)
249 2qor_A Guanylate kinase; phosp 86.7 0.38 1.3E-05 37.4 2.7 20 61-80 9-28 (204)
250 2pt7_A CAG-ALFA; ATPase, prote 86.6 0.34 1.1E-05 41.0 2.6 21 60-80 167-187 (330)
251 1y63_A LMAJ004144AAA protein; 86.6 0.39 1.3E-05 36.6 2.8 19 63-81 9-27 (184)
252 3hr8_A Protein RECA; alpha and 86.6 0.4 1.4E-05 40.9 3.0 41 64-112 61-101 (356)
253 1t5i_A C_terminal domain of A 86.6 2.3 7.8E-05 31.9 7.0 73 100-182 31-107 (172)
254 3b5x_A Lipid A export ATP-bind 86.5 1.2 4.1E-05 40.9 6.4 39 173-211 497-535 (582)
255 3foz_A TRNA delta(2)-isopenten 86.5 0.36 1.2E-05 40.2 2.6 17 66-82 12-28 (316)
256 3t15_A Ribulose bisphosphate c 86.3 0.33 1.1E-05 40.3 2.3 17 65-81 37-53 (293)
257 1xwi_A SKD1 protein; VPS4B, AA 86.3 0.34 1.2E-05 40.8 2.5 55 24-81 6-62 (322)
258 2ze6_A Isopentenyl transferase 86.3 0.37 1.3E-05 39.0 2.6 16 67-82 4-19 (253)
259 1tf7_A KAIC; homohexamer, hexa 86.2 3.8 0.00013 37.0 9.5 53 61-122 278-330 (525)
260 1lv7_A FTSH; alpha/beta domain 86.1 0.37 1.3E-05 39.0 2.5 18 64-81 45-62 (257)
261 1xti_A Probable ATP-dependent 86.1 1.9 6.7E-05 36.9 7.3 56 272-330 76-136 (391)
262 1kht_A Adenylate kinase; phosp 86.1 0.42 1.4E-05 36.5 2.7 17 64-80 3-19 (192)
263 2gxq_A Heat resistant RNA depe 86.1 5.1 0.00018 30.6 9.1 55 272-330 72-128 (207)
264 3uk6_A RUVB-like 2; hexameric 86.0 0.36 1.2E-05 41.4 2.5 17 65-81 71-87 (368)
265 1vec_A ATP-dependent RNA helic 85.9 1.6 5.5E-05 33.6 6.1 55 272-330 71-130 (206)
266 3ney_A 55 kDa erythrocyte memb 85.8 0.45 1.6E-05 36.8 2.7 19 62-80 17-35 (197)
267 2ewv_A Twitching motility prot 85.8 0.33 1.1E-05 41.9 2.1 20 61-80 133-152 (372)
268 3vfd_A Spastin; ATPase, microt 85.7 0.82 2.8E-05 39.6 4.7 18 64-81 148-165 (389)
269 1cr0_A DNA primase/helicase; R 85.7 0.69 2.4E-05 38.3 4.0 22 61-82 32-53 (296)
270 1ixz_A ATP-dependent metallopr 85.5 0.29 9.8E-06 39.6 1.5 55 23-80 9-65 (254)
271 3bgw_A DNAB-like replicative h 85.5 0.7 2.4E-05 40.8 4.1 39 63-109 196-234 (444)
272 2c9o_A RUVB-like 1; hexameric 85.5 0.41 1.4E-05 42.5 2.7 19 64-82 63-81 (456)
273 3flh_A Uncharacterized protein 85.3 0.66 2.2E-05 32.7 3.2 44 264-307 63-108 (124)
274 3zyw_A Glutaredoxin-3; metal b 85.3 4.8 0.00016 27.6 7.6 68 262-329 5-78 (111)
275 3cm0_A Adenylate kinase; ATP-b 85.3 0.33 1.1E-05 36.9 1.8 19 63-81 3-21 (186)
276 2jgn_A DBX, DDX3, ATP-dependen 85.3 2.1 7.1E-05 32.6 6.3 71 100-180 46-120 (185)
277 1z6g_A Guanylate kinase; struc 85.3 0.56 1.9E-05 36.9 3.1 20 61-80 20-39 (218)
278 1ojl_A Transcriptional regulat 85.2 0.56 1.9E-05 39.1 3.2 18 63-80 24-41 (304)
279 1um8_A ATP-dependent CLP prote 85.2 0.51 1.7E-05 40.7 3.1 18 64-81 72-89 (376)
280 3iuy_A Probable ATP-dependent 85.1 1.5 5.2E-05 34.5 5.6 56 271-330 93-151 (228)
281 1vma_A Cell division protein F 85.1 0.76 2.6E-05 38.3 3.9 18 66-83 106-123 (306)
282 4dzz_A Plasmid partitioning pr 85.0 2.4 8.1E-05 32.6 6.7 32 151-185 55-86 (206)
283 1gmx_A GLPE protein; transfera 84.9 1.3 4.3E-05 30.2 4.5 45 264-308 50-95 (108)
284 1zuh_A Shikimate kinase; alpha 84.9 0.5 1.7E-05 35.3 2.5 18 65-82 8-25 (168)
285 2j37_W Signal recognition part 84.9 3.5 0.00012 37.0 8.3 35 66-108 103-137 (504)
286 1ex7_A Guanylate kinase; subst 84.7 0.48 1.6E-05 36.3 2.4 16 65-80 2-17 (186)
287 1xp8_A RECA protein, recombina 84.6 0.74 2.5E-05 39.5 3.8 40 64-111 74-113 (366)
288 2r2a_A Uncharacterized protein 84.6 0.55 1.9E-05 36.4 2.7 23 66-88 7-29 (199)
289 4gp7_A Metallophosphoesterase; 84.6 0.3 1E-05 36.8 1.2 19 62-80 7-25 (171)
290 2ius_A DNA translocase FTSK; n 84.6 1.3 4.6E-05 39.7 5.5 20 62-81 165-184 (512)
291 3kb2_A SPBC2 prophage-derived 84.5 0.52 1.8E-05 35.2 2.5 16 66-81 3-18 (173)
292 3crm_A TRNA delta(2)-isopenten 84.5 0.5 1.7E-05 39.7 2.6 17 66-82 7-23 (323)
293 3d8b_A Fidgetin-like protein 1 84.4 0.88 3E-05 38.9 4.2 18 64-81 117-134 (357)
294 1zu4_A FTSY; GTPase, signal re 84.2 0.88 3E-05 38.2 4.0 18 66-83 107-124 (320)
295 1ly1_A Polynucleotide kinase; 84.2 0.43 1.5E-05 36.0 1.9 16 66-81 4-19 (181)
296 2r62_A Cell division protease 84.2 0.31 1.1E-05 39.7 1.2 18 64-81 44-61 (268)
297 2c95_A Adenylate kinase 1; tra 83.8 0.66 2.2E-05 35.5 2.9 21 61-81 6-26 (196)
298 2yan_A Glutaredoxin-3; oxidore 83.8 5.4 0.00018 26.8 7.3 65 264-328 8-78 (105)
299 3a00_A Guanylate kinase, GMP k 83.7 0.7 2.4E-05 35.2 2.9 16 65-80 2-17 (186)
300 4f4c_A Multidrug resistance pr 83.6 1.8 6.3E-05 43.9 6.6 37 173-209 571-607 (1321)
301 2v54_A DTMP kinase, thymidylat 83.5 0.58 2E-05 36.1 2.4 18 63-80 3-20 (204)
302 3nwj_A ATSK2; P loop, shikimat 83.5 0.78 2.7E-05 37.0 3.2 19 63-81 47-65 (250)
303 1iy2_A ATP-dependent metallopr 83.4 0.39 1.3E-05 39.4 1.5 54 24-80 34-89 (278)
304 2z43_A DNA repair and recombin 83.4 1.2 4E-05 37.5 4.4 58 64-123 107-165 (324)
305 3i5x_A ATP-dependent RNA helic 83.4 10 0.00036 34.4 11.2 77 100-183 339-419 (563)
306 2jtq_A Phage shock protein E; 83.3 3.3 0.00011 26.6 5.8 37 270-307 39-76 (85)
307 4eun_A Thermoresistant glucoki 83.3 0.69 2.4E-05 35.7 2.8 18 63-80 28-45 (200)
308 1yks_A Genome polyprotein [con 83.3 3.5 0.00012 36.3 7.6 68 100-179 177-245 (440)
309 1knq_A Gluconate kinase; ALFA/ 83.3 0.57 2E-05 35.2 2.3 18 64-81 8-25 (175)
310 1wrb_A DJVLGB; RNA helicase, D 83.2 2.6 8.9E-05 33.7 6.4 55 272-330 100-158 (253)
311 2fsf_A Preprotein translocase 83.1 4 0.00014 38.9 8.2 61 264-330 107-171 (853)
312 3d3q_A TRNA delta(2)-isopenten 83.0 0.63 2.2E-05 39.3 2.6 17 66-82 9-25 (340)
313 3bor_A Human initiation factor 82.9 4.6 0.00016 31.9 7.7 56 272-330 98-157 (237)
314 2v3c_C SRP54, signal recogniti 82.9 0.9 3.1E-05 40.0 3.6 34 66-107 101-134 (432)
315 2rhm_A Putative kinase; P-loop 82.8 0.39 1.3E-05 36.7 1.2 18 64-81 5-22 (193)
316 1znw_A Guanylate kinase, GMP k 82.8 0.74 2.5E-05 35.8 2.8 21 60-80 16-36 (207)
317 3dmn_A Putative DNA helicase; 82.6 11 0.00038 28.1 9.3 79 251-341 39-118 (174)
318 2i1q_A DNA repair and recombin 82.6 1.2 4.1E-05 37.4 4.2 59 65-123 99-166 (322)
319 3foj_A Uncharacterized protein 82.6 0.84 2.9E-05 30.7 2.7 37 271-307 55-91 (100)
320 1tev_A UMP-CMP kinase; ploop, 82.6 0.47 1.6E-05 36.3 1.6 18 64-81 3-20 (196)
321 3nwn_A Kinesin-like protein KI 82.5 0.85 2.9E-05 38.9 3.2 24 58-81 97-122 (359)
322 1rj9_A FTSY, signal recognitio 82.4 1.4 4.7E-05 36.7 4.4 17 64-80 102-118 (304)
323 3lnc_A Guanylate kinase, GMP k 82.3 0.53 1.8E-05 37.3 1.8 20 61-80 24-43 (231)
324 1in4_A RUVB, holliday junction 82.3 0.75 2.6E-05 38.9 2.8 16 65-80 52-67 (334)
325 3uie_A Adenylyl-sulfate kinase 82.2 0.66 2.2E-05 35.9 2.3 20 62-81 23-42 (200)
326 4fcw_A Chaperone protein CLPB; 82.2 0.63 2.2E-05 38.7 2.3 17 65-81 48-64 (311)
327 1xjc_A MOBB protein homolog; s 82.1 1.5 5E-05 32.9 4.1 24 66-90 6-29 (169)
328 2yvu_A Probable adenylyl-sulfa 82.1 1.3 4.4E-05 33.6 3.9 19 63-81 12-30 (186)
329 4akg_A Glutathione S-transfera 82.0 2.8 9.7E-05 45.5 7.4 47 35-82 891-941 (2695)
330 3iwh_A Rhodanese-like domain p 82.0 0.89 3.1E-05 30.9 2.6 38 270-307 54-91 (103)
331 1qde_A EIF4A, translation init 81.9 1 3.5E-05 35.3 3.4 55 271-330 81-139 (224)
332 1via_A Shikimate kinase; struc 81.7 0.88 3E-05 34.2 2.8 17 66-82 6-22 (175)
333 3eme_A Rhodanese-like domain p 81.7 0.92 3.1E-05 30.7 2.6 37 271-307 55-91 (103)
334 3sqw_A ATP-dependent RNA helic 81.6 15 0.0005 33.6 11.4 77 100-183 288-368 (579)
335 2bwj_A Adenylate kinase 5; pho 81.4 0.93 3.2E-05 34.7 2.9 21 61-81 9-29 (199)
336 1tf5_A Preprotein translocase 81.4 5.8 0.0002 37.8 8.5 56 269-330 121-180 (844)
337 3eph_A TRNA isopentenyltransfe 81.3 0.71 2.4E-05 40.0 2.3 16 67-82 5-20 (409)
338 1gvn_B Zeta; postsegregational 81.3 0.63 2.2E-05 38.4 2.0 16 65-80 34-49 (287)
339 1s96_A Guanylate kinase, GMP k 81.3 0.9 3.1E-05 35.8 2.8 21 60-80 12-32 (219)
340 2plr_A DTMP kinase, probable t 81.3 0.71 2.4E-05 35.8 2.2 19 63-81 3-21 (213)
341 1gku_B Reverse gyrase, TOP-RG; 81.3 3.7 0.00013 40.6 7.7 58 271-330 98-163 (1054)
342 3ly5_A ATP-dependent RNA helic 81.2 5.7 0.0002 32.0 7.7 55 272-330 126-184 (262)
343 2i4i_A ATP-dependent RNA helic 81.1 6.1 0.00021 34.1 8.4 71 100-180 276-350 (417)
344 1v5w_A DMC1, meiotic recombina 81.1 1.1 3.9E-05 38.0 3.6 57 65-123 123-180 (343)
345 3b9q_A Chloroplast SRP recepto 81.0 1.4 4.9E-05 36.6 4.0 17 65-81 101-117 (302)
346 2iyv_A Shikimate kinase, SK; t 80.9 1.1 3.6E-05 34.0 3.0 18 65-82 3-20 (184)
347 1bg2_A Kinesin; motor protein, 80.9 1.1 3.9E-05 37.6 3.4 24 58-81 70-95 (325)
348 3t61_A Gluconokinase; PSI-biol 80.8 0.88 3E-05 35.1 2.6 17 65-81 19-35 (202)
349 1g8p_A Magnesium-chelatase 38 80.8 0.66 2.3E-05 39.3 2.0 18 64-81 45-62 (350)
350 3bs4_A Uncharacterized protein 80.4 2.1 7.1E-05 34.7 4.7 53 64-125 21-73 (260)
351 1m7g_A Adenylylsulfate kinase; 80.3 0.87 3E-05 35.5 2.4 30 51-81 13-42 (211)
352 2bdt_A BH3686; alpha-beta prot 80.2 0.96 3.3E-05 34.4 2.6 16 65-80 3-18 (189)
353 1aky_A Adenylate kinase; ATP:A 80.1 1 3.5E-05 35.3 2.8 18 64-81 4-21 (220)
354 3i32_A Heat resistant RNA depe 80.1 8 0.00027 32.0 8.3 73 100-182 28-104 (300)
355 1goj_A Kinesin, kinesin heavy 80.1 1.2 4.2E-05 37.9 3.4 24 58-81 73-98 (355)
356 1q0u_A Bstdead; DEAD protein, 80.1 3.6 0.00012 32.0 6.0 55 272-330 72-134 (219)
357 3pxg_A Negative regulator of g 80.0 1.3 4.4E-05 39.5 3.7 18 64-81 201-218 (468)
358 2qt1_A Nicotinamide riboside k 79.9 0.36 1.2E-05 37.6 0.0 22 59-80 16-37 (207)
359 2v9p_A Replication protein E1; 79.9 0.91 3.1E-05 37.8 2.5 20 61-80 123-142 (305)
360 2vli_A Antibiotic resistance p 79.9 0.68 2.3E-05 35.0 1.6 19 63-81 4-22 (183)
361 2vvg_A Kinesin-2; motor protei 79.6 1.3 4.5E-05 37.6 3.4 24 58-81 82-107 (350)
362 1e6c_A Shikimate kinase; phosp 79.6 1.2 4E-05 33.3 2.8 17 65-81 3-19 (173)
363 2h58_A Kinesin-like protein KI 79.6 1.3 4.6E-05 37.2 3.4 25 57-81 72-98 (330)
364 3fb4_A Adenylate kinase; psych 79.5 1 3.5E-05 35.2 2.6 16 66-81 2-17 (216)
365 3cf2_A TER ATPase, transitiona 79.5 0.97 3.3E-05 43.0 2.8 57 23-80 470-527 (806)
366 2iut_A DNA translocase FTSK; n 79.5 2.9 0.0001 38.0 5.8 27 63-89 213-239 (574)
367 3c8u_A Fructokinase; YP_612366 79.5 0.92 3.1E-05 35.3 2.3 18 63-80 21-38 (208)
368 3dl0_A Adenylate kinase; phosp 79.4 0.97 3.3E-05 35.3 2.4 16 66-81 2-17 (216)
369 2db3_A ATP-dependent RNA helic 79.4 4.9 0.00017 35.2 7.2 55 272-330 129-187 (434)
370 4a74_A DNA repair and recombin 79.3 0.71 2.4E-05 36.3 1.6 20 62-81 23-42 (231)
371 1zak_A Adenylate kinase; ATP:A 79.3 1.2 4E-05 35.0 2.9 18 64-81 5-22 (222)
372 3bfn_A Kinesin-like protein KI 79.2 1.3 4.5E-05 38.1 3.3 22 60-81 93-116 (388)
373 3fkq_A NTRC-like two-domain pr 79.2 5 0.00017 34.4 7.0 31 69-107 149-179 (373)
374 3dc4_A Kinesin-like protein NO 79.2 1.2 4.2E-05 37.6 3.1 24 58-81 87-112 (344)
375 1nks_A Adenylate kinase; therm 79.2 0.99 3.4E-05 34.3 2.4 15 66-80 3-17 (194)
376 3b6u_A Kinesin-like protein KI 79.2 1.3 4.4E-05 38.0 3.2 24 58-81 94-119 (372)
377 3lre_A Kinesin-like protein KI 79.1 1.4 4.7E-05 37.6 3.4 23 59-81 99-123 (355)
378 1t5c_A CENP-E protein, centrom 79.1 1.3 4.5E-05 37.6 3.2 24 58-81 70-95 (349)
379 1zd8_A GTP:AMP phosphotransfer 79.1 1 3.5E-05 35.5 2.5 18 64-81 7-24 (227)
380 2zfi_A Kinesin-like protein KI 79.0 1.4 4.8E-05 37.7 3.4 24 58-81 82-107 (366)
381 1j8m_F SRP54, signal recogniti 79.0 2 6.8E-05 35.6 4.3 18 66-83 100-117 (297)
382 1wv9_A Rhodanese homolog TT165 79.0 1.6 5.4E-05 28.9 3.0 35 273-307 54-88 (94)
383 1wp9_A ATP-dependent RNA helic 78.8 7.9 0.00027 34.0 8.5 74 252-330 30-109 (494)
384 1cke_A CK, MSSA, protein (cyti 78.8 1.1 3.9E-05 35.1 2.7 17 65-81 6-22 (227)
385 4etp_A Kinesin-like protein KA 78.8 1.4 4.8E-05 38.2 3.4 25 57-81 132-158 (403)
386 2y65_A Kinesin, kinesin heavy 78.8 1.5 5.1E-05 37.5 3.5 24 58-81 77-102 (365)
387 1g41_A Heat shock protein HSLU 78.7 1.1 3.9E-05 39.3 2.8 18 64-81 50-67 (444)
388 2nr8_A Kinesin-like protein KI 78.6 1.4 4.7E-05 37.6 3.2 24 58-81 96-121 (358)
389 1fuu_A Yeast initiation factor 78.6 4.5 0.00015 34.6 6.7 54 271-329 88-145 (394)
390 3gbj_A KIF13B protein; kinesin 78.6 1.4 4.7E-05 37.6 3.2 24 58-81 85-110 (354)
391 3k1j_A LON protease, ATP-depen 78.6 1.7 5.7E-05 40.2 4.1 21 60-80 56-76 (604)
392 3hix_A ALR3790 protein; rhodan 78.5 2.3 7.9E-05 28.8 3.8 38 270-307 50-88 (106)
393 2pez_A Bifunctional 3'-phospho 78.5 1 3.5E-05 33.9 2.3 18 63-80 4-21 (179)
394 1v8k_A Kinesin-like protein KI 78.5 1.3 4.6E-05 38.4 3.1 24 58-81 147-172 (410)
395 2wwf_A Thymidilate kinase, put 78.5 1 3.5E-05 34.9 2.3 19 63-81 9-27 (212)
396 2i3b_A HCR-ntpase, human cance 78.4 1.4 4.8E-05 33.8 3.0 17 64-80 1-17 (189)
397 3tbk_A RIG-I helicase domain; 78.3 3.5 0.00012 37.3 6.1 55 272-330 52-110 (555)
398 1x88_A Kinesin-like protein KI 78.3 1.3 4.3E-05 37.9 2.9 25 57-81 80-106 (359)
399 4a14_A Kinesin, kinesin-like p 78.2 1.6 5.4E-05 37.0 3.5 24 58-81 76-101 (344)
400 3tif_A Uncharacterized ABC tra 78.2 0.86 2.9E-05 36.3 1.8 19 61-79 28-46 (235)
401 1ak2_A Adenylate kinase isoenz 78.2 1.3 4.4E-05 35.2 2.8 20 63-82 15-34 (233)
402 2cdn_A Adenylate kinase; phosp 78.1 1.3 4.5E-05 34.1 2.8 17 65-81 21-37 (201)
403 1qf9_A UMP/CMP kinase, protein 78.1 1.1 3.9E-05 34.0 2.4 16 66-81 8-23 (194)
404 1ye8_A Protein THEP1, hypothet 78.1 1.2 4.2E-05 33.7 2.5 15 66-80 2-16 (178)
405 1nij_A Hypothetical protein YJ 78.1 1.8 6.2E-05 36.3 3.8 37 174-213 151-187 (318)
406 1jjv_A Dephospho-COA kinase; P 78.0 1.2 4.1E-05 34.4 2.6 16 66-81 4-19 (206)
407 2og2_A Putative signal recogni 77.9 2 6.7E-05 36.7 4.0 17 65-81 158-174 (359)
408 2ipc_A Preprotein translocase 77.8 7.9 0.00027 37.3 8.2 62 263-330 111-176 (997)
409 1nn5_A Similar to deoxythymidy 77.8 1.2 4.2E-05 34.6 2.6 19 63-81 8-26 (215)
410 2wbe_C Bipolar kinesin KRP-130 77.8 1.4 4.7E-05 37.8 3.0 24 58-81 93-118 (373)
411 3t0q_A AGR253WP; kinesin, alph 77.8 1.5 5.1E-05 37.3 3.2 25 57-81 77-103 (349)
412 1f9v_A Kinesin-like protein KA 77.8 1.3 4.4E-05 37.6 2.8 25 57-81 76-102 (347)
413 3gx8_A Monothiol glutaredoxin- 77.7 11 0.00039 26.1 7.4 67 262-328 5-80 (121)
414 4a2q_A RIG-I, retinoic acid in 77.7 5.4 0.00018 38.2 7.4 55 272-330 296-354 (797)
415 2jaq_A Deoxyguanosine kinase; 77.7 1.2 4.3E-05 34.1 2.6 15 66-80 2-16 (205)
416 1nkt_A Preprotein translocase 77.6 7.8 0.00027 37.2 8.1 57 268-330 148-208 (922)
417 3tlx_A Adenylate kinase 2; str 77.5 1.3 4.5E-05 35.4 2.7 18 64-81 29-46 (243)
418 2vhj_A Ntpase P4, P4; non- hyd 77.5 0.95 3.2E-05 37.9 1.8 22 63-84 122-143 (331)
419 2chq_A Replication factor C sm 77.4 2 6.9E-05 35.6 4.0 16 66-81 40-55 (319)
420 3fht_A ATP-dependent RNA helic 77.4 10 0.00035 32.5 8.7 71 100-180 266-340 (412)
421 3cob_A Kinesin heavy chain-lik 77.3 1.3 4.5E-05 37.9 2.7 25 57-81 71-97 (369)
422 1q57_A DNA primase/helicase; d 77.3 1.5 5E-05 39.5 3.2 50 63-120 241-290 (503)
423 3u06_A Protein claret segregat 77.2 1.6 5.3E-05 38.1 3.2 25 57-81 130-156 (412)
424 3sr0_A Adenylate kinase; phosp 77.1 1.4 4.7E-05 34.4 2.6 17 66-82 2-18 (206)
425 3f9v_A Minichromosome maintena 77.0 1.1 3.6E-05 41.4 2.2 15 66-80 329-343 (595)
426 2owm_A Nckin3-434, related to 76.9 1.7 5.8E-05 38.2 3.4 22 60-81 131-154 (443)
427 2d7d_A Uvrabc system protein B 76.9 35 0.0012 31.7 12.5 77 100-186 445-525 (661)
428 3umf_A Adenylate kinase; rossm 76.9 1.2 4.1E-05 35.0 2.2 20 63-82 28-47 (217)
429 4a2p_A RIG-I, retinoic acid in 76.9 4.5 0.00015 36.5 6.4 55 272-330 55-113 (556)
430 2pt5_A Shikimate kinase, SK; a 76.8 1.4 4.8E-05 32.6 2.6 16 66-81 2-17 (168)
431 2z0h_A DTMP kinase, thymidylat 76.8 1.1 3.7E-05 34.3 2.0 15 67-81 3-17 (197)
432 3asz_A Uridine kinase; cytidin 76.7 1.2 4E-05 34.7 2.1 18 63-80 5-22 (211)
433 2k0z_A Uncharacterized protein 76.6 5.5 0.00019 27.1 5.4 37 271-307 55-91 (110)
434 3pey_A ATP-dependent RNA helic 76.6 8.8 0.0003 32.7 8.0 75 100-184 243-321 (395)
435 1tq1_A AT5G66040, senescence-a 76.6 2.1 7.3E-05 30.3 3.3 38 271-308 81-119 (129)
436 2cbz_A Multidrug resistance-as 76.6 1 3.5E-05 36.0 1.8 20 61-80 28-47 (237)
437 3a4m_A L-seryl-tRNA(SEC) kinas 76.5 0.97 3.3E-05 36.6 1.7 17 65-81 5-21 (260)
438 3tqf_A HPR(Ser) kinase; transf 76.5 1.2 4E-05 33.6 1.9 21 63-83 15-35 (181)
439 2heh_A KIF2C protein; kinesin, 76.4 1.7 5.8E-05 37.4 3.2 25 58-82 127-153 (387)
440 1sgw_A Putative ABC transporte 76.4 1.1 3.9E-05 35.1 2.0 20 61-80 32-51 (214)
441 4e22_A Cytidylate kinase; P-lo 76.4 1.5 5.1E-05 35.3 2.7 18 63-80 26-43 (252)
442 1e4v_A Adenylate kinase; trans 76.3 1.3 4.3E-05 34.6 2.2 16 66-81 2-17 (214)
443 1ukz_A Uridylate kinase; trans 76.3 1.5 5E-05 33.8 2.6 16 66-81 17-32 (203)
444 3be4_A Adenylate kinase; malar 76.3 1.4 4.9E-05 34.4 2.5 18 64-81 5-22 (217)
445 2ce7_A Cell division protein F 76.1 1.3 4.5E-05 39.4 2.5 17 65-81 50-66 (476)
446 3ice_A Transcription terminati 76.1 2.2 7.7E-05 36.7 3.8 21 61-81 171-191 (422)
447 3cmu_A Protein RECA, recombina 76.0 2 6.8E-05 45.2 4.0 48 61-117 1078-1125(2050)
448 2rep_A Kinesin-like protein KI 75.9 1.7 5.7E-05 37.4 3.0 24 58-81 108-133 (376)
449 2wv9_A Flavivirin protease NS2 75.8 8.5 0.00029 36.0 7.9 68 100-179 410-478 (673)
450 2pbr_A DTMP kinase, thymidylat 75.8 1.5 5.3E-05 33.3 2.6 15 67-81 3-17 (195)
451 2wci_A Glutaredoxin-4; redox-a 75.6 9.7 0.00033 27.2 6.6 68 262-329 24-97 (135)
452 2wem_A Glutaredoxin-related pr 75.5 12 0.0004 26.0 6.9 65 265-329 12-83 (118)
453 2if2_A Dephospho-COA kinase; a 75.4 1.5 5E-05 33.9 2.4 15 66-80 3-17 (204)
454 3tqc_A Pantothenate kinase; bi 75.2 5.1 0.00017 33.6 5.7 15 66-80 94-108 (321)
455 1f2t_A RAD50 ABC-ATPase; DNA d 75.2 1.8 6.3E-05 31.6 2.7 15 66-80 25-39 (149)
456 1qxn_A SUD, sulfide dehydrogen 75.1 3 0.0001 29.9 3.8 39 269-307 79-118 (137)
457 2ffh_A Protein (FFH); SRP54, s 75.0 2.5 8.6E-05 37.0 3.9 18 66-83 100-117 (425)
458 2grj_A Dephospho-COA kinase; T 74.9 1.7 5.9E-05 33.3 2.6 17 66-82 14-30 (192)
459 3gfo_A Cobalt import ATP-bindi 74.7 1.1 3.9E-05 36.6 1.6 20 61-80 31-50 (275)
460 2pze_A Cystic fibrosis transme 74.6 1.2 4.1E-05 35.3 1.7 20 61-80 31-50 (229)
461 2yhs_A FTSY, cell division pro 74.5 2.3 7.9E-05 37.9 3.6 17 65-81 294-310 (503)
462 3vkg_A Dynein heavy chain, cyt 74.5 8.5 0.00029 42.7 8.3 46 36-82 875-924 (3245)
463 1uf9_A TT1252 protein; P-loop, 74.5 1.6 5.4E-05 33.5 2.4 16 66-81 10-25 (203)
464 1np6_A Molybdopterin-guanine d 74.5 3.3 0.00011 31.1 4.1 24 65-89 7-30 (174)
465 1wik_A Thioredoxin-like protei 74.5 16 0.00055 24.6 7.4 60 269-328 11-76 (109)
466 2xxa_A Signal recognition part 74.5 3.1 0.0001 36.6 4.4 20 66-85 102-121 (433)
467 2j0s_A ATP-dependent RNA helic 74.4 10 0.00036 32.6 7.9 71 100-180 276-350 (410)
468 2v6i_A RNA helicase; membrane, 74.4 9.9 0.00034 33.3 7.7 67 100-178 171-238 (431)
469 2jlq_A Serine protease subunit 74.3 11 0.00037 33.2 8.0 68 100-179 188-256 (451)
470 2xb4_A Adenylate kinase; ATP-b 74.3 1.7 5.9E-05 34.1 2.6 16 66-81 2-17 (223)
471 1htw_A HI0065; nucleotide-bind 73.8 1.5 5.2E-05 32.4 2.0 18 62-79 31-48 (158)
472 3pxi_A Negative regulator of g 73.7 2.4 8.1E-05 40.4 3.7 18 64-81 201-218 (758)
473 2pcj_A ABC transporter, lipopr 73.7 1.2 4.2E-05 35.2 1.5 19 61-79 27-45 (224)
474 3qf7_A RAD50; ABC-ATPase, ATPa 73.6 1.9 6.6E-05 36.9 2.8 16 66-81 25-40 (365)
475 4g1u_C Hemin import ATP-bindin 73.6 1.3 4.4E-05 36.1 1.7 20 61-80 34-53 (266)
476 2bbw_A Adenylate kinase 4, AK4 73.6 2 6.8E-05 34.3 2.8 18 63-80 26-43 (246)
477 2fsx_A RV0390, COG0607: rhodan 73.5 4.8 0.00016 29.2 4.6 37 271-307 79-116 (148)
478 4akg_A Glutathione S-transfera 73.4 1.3 4.6E-05 47.9 2.1 21 61-81 1264-1284(2695)
479 1vht_A Dephospho-COA kinase; s 73.4 1.3 4.4E-05 34.6 1.6 17 65-81 5-21 (218)
480 3cmw_A Protein RECA, recombina 73.2 2.6 8.9E-05 43.6 4.0 43 62-112 32-74 (1706)
481 3eiq_A Eukaryotic initiation f 73.1 8.6 0.0003 33.1 7.0 57 271-330 107-167 (414)
482 3kta_A Chromosome segregation 73.1 2 6.7E-05 32.4 2.5 15 66-80 28-42 (182)
483 1g6h_A High-affinity branched- 73.1 1.4 4.7E-05 35.7 1.7 19 61-79 30-48 (257)
484 2p5t_B PEZT; postsegregational 73.0 1.4 4.8E-05 35.5 1.7 17 65-81 33-49 (253)
485 1ji0_A ABC transporter; ATP bi 72.9 1.4 4.8E-05 35.2 1.7 20 61-80 29-48 (240)
486 3zq6_A Putative arsenical pump 72.9 3.3 0.00011 34.8 4.1 34 67-108 17-50 (324)
487 2ff7_A Alpha-hemolysin translo 72.8 1.6 5.4E-05 35.1 2.0 20 61-80 32-51 (247)
488 1b0u_A Histidine permease; ABC 72.7 1.4 4.9E-05 35.7 1.7 20 61-80 29-48 (262)
489 3nh6_A ATP-binding cassette SU 72.7 1.2 4.1E-05 37.1 1.3 20 61-80 77-96 (306)
490 1mv5_A LMRA, multidrug resista 72.6 1.2 4.1E-05 35.7 1.2 20 61-80 25-44 (243)
491 2ghi_A Transport protein; mult 72.5 1.6 5.6E-05 35.3 2.1 20 61-80 43-62 (260)
492 1svm_A Large T antigen; AAA+ f 72.2 2 6.8E-05 37.0 2.6 18 63-80 168-185 (377)
493 1vpl_A ABC transporter, ATP-bi 72.1 1.5 5.2E-05 35.4 1.7 20 61-80 38-57 (256)
494 3lda_A DNA repair protein RAD5 72.1 3.1 0.00011 36.1 3.8 44 64-109 178-221 (400)
495 2qi9_C Vitamin B12 import ATP- 72.0 1.5 5.1E-05 35.3 1.7 20 61-80 23-42 (249)
496 2ixe_A Antigen peptide transpo 71.9 1.5 5.3E-05 35.7 1.8 19 61-79 42-60 (271)
497 1s2m_A Putative ATP-dependent 71.8 12 0.00041 32.0 7.6 71 100-180 258-332 (400)
498 2woo_A ATPase GET3; tail-ancho 71.8 3.8 0.00013 34.5 4.2 33 67-107 22-54 (329)
499 2olj_A Amino acid ABC transpor 71.6 1.6 5.4E-05 35.5 1.7 20 61-80 47-66 (263)
500 1c4o_A DNA nucleotide excision 71.6 55 0.0019 30.5 12.3 77 100-186 439-519 (664)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-52 Score=375.38 Aligned_cols=326 Identities=40% Similarity=0.664 Sum_probs=291.0
Q ss_pred ceeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCC
Q 019359 14 EITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQP 93 (342)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~ 93 (342)
.+.+.|...|.|...|+++++++.+.+++..+||..|+++|.++++.+++++++++++|||+|||++|+++++.++....
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCC
Q 019359 94 RLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLR 173 (342)
Q Consensus 94 ~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 173 (342)
......++++||++|+++|+.|+.+.+++++...++.+..++|+.........+..+++|+|+||++|.+++......+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 33333477999999999999999999999998888999999999888777777778899999999999999988877889
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhc--CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEE
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQI--RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVE 251 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
.++++|+||||++.+.+|...+..++..+ ++..|++++|||++..+..+...++.++..+...... .....+...+.
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~ 281 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIY 281 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEE
Confidence 99999999999999999999999998875 5678999999999999999999999888877765443 23344555666
Q ss_pred EechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019359 252 VVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (342)
Q Consensus 252 ~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 331 (342)
......+...+.+.+.+. ..++||||+++++++.+++.|.+.++++..+||++++.+|..+++.|++|+.+|||||++
T Consensus 282 ~~~~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v 359 (434)
T 2db3_A 282 EVNKYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 359 (434)
T ss_dssp ECCGGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG
T ss_pred EeCcHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh
Confidence 677778888888888774 345999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCC
Q 019359 332 AARGLGRITVC 342 (342)
Q Consensus 332 ~~~Gidip~v~ 342 (342)
+++|+|+|+|+
T Consensus 360 ~~rGlDi~~v~ 370 (434)
T 2db3_A 360 ASRGLDIKNIK 370 (434)
T ss_dssp GTSSCCCTTCC
T ss_pred hhCCCCcccCC
Confidence 99999999975
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.7e-50 Score=358.13 Aligned_cols=327 Identities=45% Similarity=0.705 Sum_probs=283.0
Q ss_pred eeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCC
Q 019359 15 ITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPR 94 (342)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~ 94 (342)
+.+.|...|.|...|+++++++.+.+++...||..|+++|.++++.+..++++++.+|||+|||++|+++++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 55678888999999999999999999999999999999999999999999999999999999999999999887754321
Q ss_pred c-------------cCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH
Q 019359 95 L-------------VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL 161 (342)
Q Consensus 95 ~-------------~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l 161 (342)
. ....++++||++|+++|+.|+.+.+++++...++.+..+.|+.........+..+++|+|+||+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 0 011246899999999999999999999988888999999999888777777778899999999999
Q ss_pred HHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc--CC--CccEEEEEeecCchHHHHHHHhcCCCeEEEecc
Q 019359 162 IDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGS 237 (342)
Q Consensus 162 ~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 237 (342)
.+.+......+..++++|+||||.+.+.++...+..+.... +. ..+++++|||++.....+...++..+.......
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99988877778889999999999999999999999888743 22 578999999999988888888888887766654
Q ss_pred cccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHH
Q 019359 238 LELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAE 317 (342)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 317 (342)
.. .....+...+.......+...+.+++.....++++||||+++++++.+++.|++.++.+..+||+++..+|..+++.
T Consensus 243 ~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 243 VG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp ----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 32 23334455555666778888888888876668899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEEecccccCCCCCCCC
Q 019359 318 FRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 318 f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|++|+.+|||||+++++|+|+|+++
T Consensus 322 f~~g~~~vlvaT~~~~~Gidip~v~ 346 (417)
T 2i4i_A 322 FRSGKSPILVATAVAARGLDISNVK 346 (417)
T ss_dssp HHHTSSCEEEECHHHHTTSCCCCEE
T ss_pred HHcCCCCEEEECChhhcCCCcccCC
Confidence 9999999999999999999999863
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.5e-49 Score=353.61 Aligned_cols=318 Identities=33% Similarity=0.524 Sum_probs=274.4
Q ss_pred ccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCC
Q 019359 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (342)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~ 98 (342)
....+.+...|+++++++.+.+++..+||..|+++|.++++.+++++++++.+|||+|||++++++++..+....
T Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----- 103 (410)
T 2j0s_A 29 TSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV----- 103 (410)
T ss_dssp CCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS-----
T ss_pred CCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc-----
Confidence 334455667899999999999999999999999999999999999999999999999999999999988775332
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEE
Q 019359 99 EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (342)
Q Consensus 99 ~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (342)
.+.++||++|+++|+.||.+.+++++...++.+..+.|+.........+..+++|+|+||+++...+......+..++++
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~v 183 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKML 183 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEE
Confidence 26789999999999999999999999888999999999988877777776778999999999999988877778889999
Q ss_pred EEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhH
Q 019359 179 VLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEK 258 (342)
Q Consensus 179 IvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (342)
|+||||.+.+.++...+..+...+++..+++++|||++.....+...++.++..+........................+
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 263 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK 263 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHH
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhH
Confidence 99999999999999999999999988999999999999887777777888887766554432222222333333344557
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCC
Q 019359 259 YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGR 338 (342)
Q Consensus 259 ~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidi 338 (342)
...+.+++... ..+++||||+++++++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 264 ~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 342 (410)
T 2j0s_A 264 FDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342 (410)
T ss_dssp HHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC
T ss_pred HHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc
Confidence 77788777765 45789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 019359 339 ITVC 342 (342)
Q Consensus 339 p~v~ 342 (342)
|+++
T Consensus 343 ~~v~ 346 (410)
T 2j0s_A 343 PQVS 346 (410)
T ss_dssp TTEE
T ss_pred ccCC
Confidence 9863
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.3e-47 Score=340.38 Aligned_cols=310 Identities=25% Similarity=0.447 Sum_probs=268.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEE
Q 019359 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (342)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil 106 (342)
..|+++++++.+.+.+..+||..|+++|.++++.+..++++++.+|||+|||++++++++..+.... .+.++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~-----~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT-----GQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT-----TCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC-----CCeeEEEE
Confidence 5699999999999999999999999999999999999999999999999999999999888765432 25689999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccc
Q 019359 107 APTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (342)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (342)
+|+++|+.||.+.++++.... ++.+..+.|+.........+.. .++|+|+||+++...+......+..++++|+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999987765 7888889988776655544433 47999999999999888877778899999999999
Q ss_pred hhhcC-CChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHH
Q 019359 185 RMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLI 263 (342)
Q Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 263 (342)
.+.+. ++...+..+....+...+++++|||++.........++..+..+................+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 98763 56777788888888889999999999999888888899988877766544334445556666667777888888
Q ss_pred HHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 264 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+++... .++++||||+++++++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 243 ~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 243 DLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 888765 678999999999999999999999999999999999999999999999999999999999999999999863
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5e-48 Score=345.71 Aligned_cols=318 Identities=31% Similarity=0.515 Sum_probs=269.1
Q ss_pred ccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCC
Q 019359 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (342)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~ 98 (342)
...++.....|+.+++++.+.+.+..+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+....
T Consensus 32 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----- 106 (414)
T 3eiq_A 32 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL----- 106 (414)
T ss_dssp CCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS-----
T ss_pred CCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC-----
Confidence 345567778899999999999999999999999999999999999999999999999999999999988876542
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhc-CCCcEEEeChHHHHHHHhccccCCCCccE
Q 019359 99 EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTY 177 (342)
Q Consensus 99 ~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (342)
.+.++||++|+++|+.|+.+.+++++...+..+..+.|+.........+. .+++|+|+||+++.+.+......+..+++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 186 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCE
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcE
Confidence 26789999999999999999999998888889888888887766655554 56899999999999998887777888999
Q ss_pred EEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhh
Q 019359 178 LVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (342)
Q Consensus 178 iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (342)
+|+||||.+.+.++...+..++..+++..+++++|||++.........++.++..+........................
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW 266 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh
Confidence 99999999999999999999999998899999999999998888888888888877665544333333333444444555
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCC
Q 019359 258 KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLG 337 (342)
Q Consensus 258 ~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid 337 (342)
+...+.+++... .++++||||+++++++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|
T Consensus 267 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 267 KLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp HHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred HHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 777787777665 5678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 019359 338 RITVC 342 (342)
Q Consensus 338 ip~v~ 342 (342)
+|+++
T Consensus 346 ip~v~ 350 (414)
T 3eiq_A 346 VQQVS 350 (414)
T ss_dssp GGGCS
T ss_pred ccCCC
Confidence 99874
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2e-47 Score=340.29 Aligned_cols=312 Identities=28% Similarity=0.490 Sum_probs=268.7
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
..+...|+++++++.+.+.+...||..|+++|.++++.+.+++++++.+|||+|||++++++++..+.... .+.+
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL-----NKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc-----CCcc
Confidence 34456799999999999999999999999999999999999999999999999999999999988775432 2568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEec
Q 019359 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (342)
+||++|+++|+.|+.+.++++....++.+..+.|+............+++|+|+||+++.+.+......+..++++|+||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999988888999999998877766666667789999999999998887777788899999999
Q ss_pred cchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHH
Q 019359 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRL 262 (342)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (342)
||++.+.++...+..+...+++..+++++|||++..........+..+........ .........+.......+...+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l 249 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCL 249 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHH
Confidence 99988877788888888888888999999999999888888888888766544322 2233344555566667777777
Q ss_pred HHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 263 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
..++... .++++||||+++++++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 250 ~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 250 NTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 7777664 568999999999999999999999999999999999999999999999999999999999999999999863
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.5e-47 Score=337.41 Aligned_cols=308 Identities=28% Similarity=0.467 Sum_probs=260.4
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce
Q 019359 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (342)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
....|+++++++.+.+.+...|+..|+++|.++++.++.+ +++++.+|||+|||++++++++..+.... .+.+
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-----ASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-----CSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC-----CCcc
Confidence 3567999999999999999999999999999999999988 89999999999999999999888775532 2678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEec
Q 019359 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (342)
+||++|+++|+.|+.+.+++++...++.+....++...... ..+++|+|+||+++...+......+..++++|+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999988888888887776544332 22579999999999999888777788999999999
Q ss_pred cchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHH
Q 019359 183 ADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNR 261 (342)
Q Consensus 183 ~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (342)
||.+.+ .++...+..+...+++..+++++|||+++........++..+...........................+...
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDV 233 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHH
Confidence 999877 5677888888888888999999999999988888888888887766655443333222233333344556666
Q ss_pred HHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
+...+... .++++||||+++++++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 234 l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 312 (395)
T 3pey_A 234 LTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTV 312 (395)
T ss_dssp HHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccC
Confidence 66655443 57899999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 019359 342 C 342 (342)
Q Consensus 342 ~ 342 (342)
+
T Consensus 313 ~ 313 (395)
T 3pey_A 313 S 313 (395)
T ss_dssp E
T ss_pred C
Confidence 3
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.9e-46 Score=335.19 Aligned_cols=315 Identities=25% Similarity=0.389 Sum_probs=263.2
Q ss_pred ccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCcc
Q 019359 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV 96 (342)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~ 96 (342)
......+...|+++++++.+.+.+..+||..|+++|.++++.+..+ +++++.+|||+|||++|+++++..+....
T Consensus 17 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--- 93 (412)
T 3fht_A 17 PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--- 93 (412)
T ss_dssp TTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS---
T ss_pred CCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC---
Confidence 3344556778999999999999999999999999999999999987 89999999999999999999988876543
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc-cccCCCC
Q 019359 97 QGEGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRR 174 (342)
Q Consensus 97 ~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~ 174 (342)
.+.++||++|+++|+.|+.+.+++++... ++.+....++....... ....+|+|+||+++.+.+.. ....+..
T Consensus 94 --~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~ 168 (412)
T 3fht_A 94 --KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 168 (412)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGG
T ss_pred --CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhh
Confidence 25689999999999999999999987653 56777666665543321 33579999999999998865 4456688
Q ss_pred ccEEEEeccchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEe
Q 019359 175 VTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV 253 (342)
Q Consensus 175 ~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
++++|+||||.+.+ .++...+..+...++...+++++|||++.....+...++..+..+....................
T Consensus 169 ~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 3fht_A 169 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS 248 (412)
T ss_dssp CCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECS
T ss_pred CcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcC
Confidence 99999999999876 67888888888888889999999999999998898989888887766554433333333333344
Q ss_pred chhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019359 254 TEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (342)
Q Consensus 254 ~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 333 (342)
....+...+.+.+... .++++||||+++++++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||++++
T Consensus 249 ~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 327 (412)
T 3fht_A 249 SRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327 (412)
T ss_dssp SHHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred ChHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccc
Confidence 4566777777777664 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 019359 334 RGLGRITVC 342 (342)
Q Consensus 334 ~Gidip~v~ 342 (342)
+|+|+|+++
T Consensus 328 ~Gidip~~~ 336 (412)
T 3fht_A 328 RGIDVEQVS 336 (412)
T ss_dssp SSCCCTTEE
T ss_pred cCCCccCCC
Confidence 999999863
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.7e-48 Score=343.09 Aligned_cols=315 Identities=32% Similarity=0.520 Sum_probs=186.1
Q ss_pred CCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCC
Q 019359 21 DVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEG 100 (342)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~ 100 (342)
....+...|+++++++.+.+.+..+|+..|+++|.++++.+..++++++.+|||+|||++++++++..+.... .+
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~-----~~ 89 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----KA 89 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC-----CS
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC-----CC
Confidence 3456677899999999999999999999999999999999999999999999999999999999988775532 26
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEE
Q 019359 101 PIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (342)
Q Consensus 101 ~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (342)
.++||++|+++|+.|+.+.+.++....++.+..+.|+.........+. +++|+|+||+++.+.+......+..++++|+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 789999999999999999999998888899999998877655544433 5799999999999988877777788999999
Q ss_pred eccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHH
Q 019359 181 DEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (342)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (342)
||||.+.+.++...+..+...+++..+++++|||++.........++..+..+........................+..
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHH
Confidence 99999998889999999999998899999999999998888888888888877765543222222222222222333555
Q ss_pred HHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 261 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 261 ~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
.+.+++... .++++||||+++++++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 249 ~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 249 CLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 555555443 5678999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 019359 341 VC 342 (342)
Q Consensus 341 v~ 342 (342)
++
T Consensus 328 ~~ 329 (394)
T 1fuu_A 328 VS 329 (394)
T ss_dssp --
T ss_pred CC
Confidence 74
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.9e-46 Score=327.02 Aligned_cols=303 Identities=36% Similarity=0.569 Sum_probs=263.4
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcC-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEE
Q 019359 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (342)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vl 104 (342)
...|+++++++.+.+.+.+.||..|+++|.++++.+.++ +++++.+|||+|||++++++++..+... .+.++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 356999999999999999999999999999999998888 6999999999999999998888776543 267899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccc
Q 019359 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (342)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (342)
|++|+++|+.||.+.+.++....++.+..+.|+.........+. ..+|+|+||+++.+.+......+..++++|+||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998877888888888887666555444 58999999999999988877778889999999999
Q ss_pred hhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHH
Q 019359 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIK 264 (342)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (342)
.+.+.++...+..+...+++..+++++|||++.........+++++....... ...+...+.......+...+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHH
Confidence 99998899999999988888999999999999988888887877665544322 2234455556667777778877
Q ss_pred HHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 265 ~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.+.. .++++||||+++++++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 233 ~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 233 LLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 7763 578899999999999999999999999999999999999999999999999999999999999999999874
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.5e-46 Score=337.13 Aligned_cols=308 Identities=25% Similarity=0.404 Sum_probs=171.2
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceE
Q 019359 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (342)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~v 103 (342)
...|+.+++++.+.+.+..+||..|+++|.++++.++.+ +++++.+|||+|||++|+++++..+.... .++++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-----~~~~~ 165 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KYPQC 165 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-----CSCCE
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-----CCCcE
Confidence 567999999999999999999999999999999999987 89999999999999999999988876543 25689
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc-cccCCCCccEEEEe
Q 019359 104 LVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYLVLD 181 (342)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIvD 181 (342)
||++|+++|+.|+.+.+++++... ++.+....++....... ..+.+|+|+||+++.+++.. ....+..+++||+|
T Consensus 166 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 242 (479)
T 3fmp_B 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (479)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEEC
T ss_pred EEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEE
Confidence 999999999999999998876643 56666666654433221 23568999999999998865 34567889999999
Q ss_pred ccchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHH
Q 019359 182 EADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (342)
Q Consensus 182 E~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (342)
|+|.+.+ .++...+..+...++...|++++|||++.....+...++..+..+........................+..
T Consensus 243 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (479)
T 3fmp_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQ 322 (479)
T ss_dssp CHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------------
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHH
Confidence 9999876 567778888888888899999999999999989999999888887776544333332333333333445556
Q ss_pred HHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 261 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 261 ~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
.+...+... ..+++||||+++++++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 323 ~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~ 401 (479)
T 3fmp_B 323 ALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcccc
Confidence 666655543 4678999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 019359 341 VC 342 (342)
Q Consensus 341 v~ 342 (342)
++
T Consensus 402 v~ 403 (479)
T 3fmp_B 402 VS 403 (479)
T ss_dssp --
T ss_pred CC
Confidence 74
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=9.1e-45 Score=336.68 Aligned_cols=321 Identities=29% Similarity=0.426 Sum_probs=253.0
Q ss_pred CCCccccccccCC----CCHHHHHHHHHcCCCCCcHHHHhhHHHHh--cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCC
Q 019359 21 DVPRPIRIFQEAN----FPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPR 94 (342)
Q Consensus 21 ~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~--~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~ 94 (342)
..+.+...|+++. +++++.+++..+||..|+|+|.++++.++ .++++++.+|||+|||++|+++++..+.....
T Consensus 11 ~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~ 90 (579)
T 3sqw_A 11 EDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF 90 (579)
T ss_dssp CSSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc
Confidence 3344445555553 99999999999999999999999999988 67899999999999999999999988876532
Q ss_pred ccCCCCceEEEEcCcHHHHHHHHHHHHHhcC----CCCeEEEEEecCCcchhhHHhhc-CCCcEEEeChHHHHHHHhcc-
Q 019359 95 LVQGEGPIVLVLAPTRELAVQIQEEALKFGS----RAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQ- 168 (342)
Q Consensus 95 ~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~- 168 (342)
. ...+.++||++|+++|+.|+.+.++++.. .....+..+.++.........+. .+++|+|+||+++..++...
T Consensus 91 ~-~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~ 169 (579)
T 3sqw_A 91 D-SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS 169 (579)
T ss_dssp S-STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH
T ss_pred c-ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc
Confidence 1 12356899999999999999999998752 23467778888877666655553 36899999999999887764
Q ss_pred ccCCCCccEEEEeccchhhcCCChHHHHHHHhhcC-------CCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccc
Q 019359 169 HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR-------PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELK 241 (342)
Q Consensus 169 ~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-------~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (342)
...+..++++|+||||.+.+++|...+..+...++ ...+++++|||++..+..+...++..+...........
T Consensus 170 ~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~ 249 (579)
T 3sqw_A 170 NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN 249 (579)
T ss_dssp HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS
T ss_pred ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcc
Confidence 33567899999999999999999998888876653 26789999999999888888888888776655432211
Q ss_pred ---cccccceEEEEech-hhH----HHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC---CCCcEeecCCCCHHH
Q 019359 242 ---ANQSINQVVEVVTE-AEK----YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD---GWPALSIHGDKNQSE 310 (342)
Q Consensus 242 ---~~~~~~~~~~~~~~-~~~----~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~ 310 (342)
....+...+..... ... ...+...+.....+.++||||+++++++.+++.|++. ++.+..+||++++.+
T Consensus 250 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~ 329 (579)
T 3sqw_A 250 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 329 (579)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHH
Confidence 12222222322222 222 2333344444345789999999999999999999876 889999999999999
Q ss_pred HHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 311 RDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 311 r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|..+++.|++|+.+|||||+++++|+|+|+|+
T Consensus 330 R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~ 361 (579)
T 3sqw_A 330 RTSLVKRFKKDESGILVCTDVGARGMDFPNVH 361 (579)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTSSCCCTTCC
T ss_pred HHHHHHHhhcCCCeEEEEcchhhcCCCcccCC
Confidence 99999999999999999999999999999975
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.1e-43 Score=306.06 Aligned_cols=286 Identities=30% Similarity=0.492 Sum_probs=239.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHH
Q 019359 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (342)
Q Consensus 34 ~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~ 113 (342)
+++.+.+.++.+||..|+++|.++++.+.+++++++.+|||+|||++++++++.. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999998888764 56799999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChH
Q 019359 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEP 193 (342)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~ 193 (342)
.||.+.+++++...+..+..++|+.........+. .++|+|+||+++.+.+......+..++++|+||||.+.++++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888889999998877666555544 48999999999999888777777889999999999999999999
Q ss_pred HHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCC
Q 019359 194 QIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGS 273 (342)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 273 (342)
.+..+....+...+++++|||++.........++..+..+.... ........+....... ......+.. ..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACI----GLANVEHKFVHVKDDW--RSKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG----GGGGEEEEEEECSSSS--HHHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc----ccCCceEEEEEeChHH--HHHHHHHHh-CCCC
Confidence 99999988888889999999999988888888887766553321 1122222222222221 122233333 3578
Q ss_pred cEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 274 RILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 274 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
++||||+++++++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 286 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVE 286 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBS
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCC
Confidence 89999999999999999886 578999999999999999999999999999999999999999874
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.9e-44 Score=331.05 Aligned_cols=308 Identities=30% Similarity=0.446 Sum_probs=245.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHHHh--cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHH
Q 019359 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (342)
Q Consensus 34 ~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~--~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~ 111 (342)
+++.+.+.+..+||..|+|+|.++++.++ .++++++.+|||+|||++|+++++..+....... ..+.++||++|+++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~-~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS-QYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS-TTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccc-cCCeeEEEEcCcHH
Confidence 99999999999999999999999999988 5789999999999999999999999887654221 22568999999999
Q ss_pred HHHHHHHHHHHhcC----CCCeEEEEEecCCcchhhHHhh-cCCCcEEEeChHHHHHHHhcc-ccCCCCccEEEEeccch
Q 019359 112 LAVQIQEEALKFGS----RAGIRSTCIYGGAPKGPQIRDL-RRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDEADR 185 (342)
Q Consensus 112 l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE~h~ 185 (342)
|+.|+.+.++++.. .....+..+.++.........+ ..+++|+|+||+++..++... ...+..++++|+||||.
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 99999999998643 2245677788887766655544 336899999999999887664 23467899999999999
Q ss_pred hhcCCChHHHHHHHhhcC-------CCccEEEEEeecCchHHHHHHHhcCCCeEEEeccccccc---ccccceEEEEec-
Q 019359 186 MLDMGFEPQIRKIVTQIR-------PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKA---NQSINQVVEVVT- 254 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~-------~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~- 254 (342)
+.+++|...+..+...++ ...|++++|||++..+..+...++..+............ ...+...+....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999998888766652 367899999999998888888888887766654322111 122222222222
Q ss_pred hhhH----HHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC---CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEE
Q 019359 255 EAEK----YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD---GWPALSIHGDKNQSERDWVLAEFRSGRSPIMT 327 (342)
Q Consensus 255 ~~~~----~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 327 (342)
.... ...+...+.....+.++||||++++.++.+++.|++. ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2222 2333334444345789999999999999999999876 88999999999999999999999999999999
Q ss_pred EecccccCCCCCCCC
Q 019359 328 ATDVAARGLGRITVC 342 (342)
Q Consensus 328 ~t~~~~~Gidip~v~ 342 (342)
||+++++|+|+|+|+
T Consensus 398 aT~~~~~GiDip~v~ 412 (563)
T 3i5x_A 398 CTDVGARGMDFPNVH 412 (563)
T ss_dssp ECGGGTSSCCCTTCC
T ss_pred EcchhhcCCCcccCC
Confidence 999999999999875
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-45 Score=332.18 Aligned_cols=310 Identities=26% Similarity=0.438 Sum_probs=220.7
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCC
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEG 100 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~ 100 (342)
+.+...|...++++.+.+.+...|+..|+++|.++++.+.++ +++++.+|||+|||++|+++++..+.... .+
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~-----~~ 189 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV-----PK 189 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-----CS
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC-----CC
Confidence 333445666778999999999999999999999999999987 89999999999999999999988876543 25
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEE
Q 019359 101 PIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (342)
Q Consensus 101 ~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (342)
.++||++|+++|+.|+.+.++++....++.+....++...... ..+++|+|+||+++...+......+..+++||+
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 6899999999999999999999887766666555544333221 235899999999999988887777889999999
Q ss_pred eccchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHH
Q 019359 181 DEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY 259 (342)
Q Consensus 181 DE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (342)
||||.+.+ .++...+..+...++.+.+++++|||++.....+...+...+..+........................+.
T Consensus 266 DEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~ 345 (508)
T 3fho_A 266 DEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKY 345 (508)
T ss_dssp CCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHH
T ss_pred echhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHH
Confidence 99999876 56888899999999889999999999999888888888888877665544433333333333333455666
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 260 NRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 260 ~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
..+..++... .++++||||+++++++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 346 ~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip 424 (508)
T 3fho_A 346 NVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVS 424 (508)
T ss_dssp HHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCT
T ss_pred HHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCcc
Confidence 6666666553 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 019359 340 TVC 342 (342)
Q Consensus 340 ~v~ 342 (342)
+++
T Consensus 425 ~v~ 427 (508)
T 3fho_A 425 QVN 427 (508)
T ss_dssp TCC
T ss_pred CCC
Confidence 875
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.1e-43 Score=323.09 Aligned_cols=299 Identities=20% Similarity=0.279 Sum_probs=235.7
Q ss_pred ccccc--cCCCCHHHHHHHHH-cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce
Q 019359 26 IRIFQ--EANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (342)
Q Consensus 26 ~~~~~--~~~~~~~~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
...|+ .+++++.+.+.|.. +||..|+|+|.++++.++.++++++.+|||+|||++|+++++.. ..+
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~ 86 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGF 86 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSE
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCc
Confidence 34444 47889999999998 79999999999999999999999999999999999999998763 457
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH---h---hcCCCcEEEeChHHHH------HHHhcccc
Q 019359 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---D---LRRGVEIVIATPGRLI------DMLEAQHT 170 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~iiv~T~~~l~------~~~~~~~~ 170 (342)
+||++|+++|+.|+.+.+.++ ++.+..+.++........ . .....+|+|+||+++. +.+.. ..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HH
T ss_pred EEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hh
Confidence 999999999999999999986 677788888766543321 1 2346899999999874 22222 23
Q ss_pred CCCCccEEEEeccchhhcCC--ChHHHHH--HHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEeccccccccccc
Q 019359 171 NLRRVTYLVLDEADRMLDMG--FEPQIRK--IVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSI 246 (342)
Q Consensus 171 ~~~~~~~iIvDE~h~~~~~~--~~~~~~~--~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
.+..++++|+||||.+.+++ |++.+.. .+....+..+++++|||++......+..++..+....+.......+ +
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~n--l 239 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPN--L 239 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTT--E
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcc--c
Confidence 35678999999999998876 6666554 2333345789999999999888777777776655444433322221 1
Q ss_pred ceEEEEe--chhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCC
Q 019359 247 NQVVEVV--TEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP 324 (342)
Q Consensus 247 ~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 324 (342)
...+... ........+.+++.....++++||||+++++++.+++.|.+.|+.+..+||++++.+|..+++.|..|+.+
T Consensus 240 ~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 319 (591)
T 2v1x_A 240 YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ 319 (591)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 1111111 23455667777776655678999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCC
Q 019359 325 IMTATDVAARGLGRITVC 342 (342)
Q Consensus 325 vlv~t~~~~~Gidip~v~ 342 (342)
|||||+++++|||+|+|+
T Consensus 320 VlVAT~a~~~GID~p~V~ 337 (591)
T 2v1x_A 320 VVVATVAFGMGIDKPDVR 337 (591)
T ss_dssp EEEECTTSCTTCCCSCEE
T ss_pred EEEEechhhcCCCccccc
Confidence 999999999999999974
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.6e-42 Score=313.11 Aligned_cols=294 Identities=20% Similarity=0.303 Sum_probs=232.1
Q ss_pred ccccccCCCCHHHHHHHHH-cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEE
Q 019359 26 IRIFQEANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (342)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vl 104 (342)
+..|+++++++.+.+.+.. +|+..++++|.++++.+++++++++.+|||+|||++|+++++.. ..++|
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~l 69 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTV 69 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEE
Confidence 3579999999999999998 89999999999999999999999999999999999999988754 45689
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH----hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEE
Q 019359 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR----DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (342)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (342)
|++|+++|+.|+.+.++.+ ++.+..+.++........ ......+|+++||+++.............++++|+
T Consensus 70 vi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred EECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 9999999999999999885 667777777765443321 22345899999999985332222223467899999
Q ss_pred eccchhhcCC--ChHHHHHH---HhhcCCCccEEEEEeecCchHHHHHHHhcC--CCeEEEecccccccccccceEEEEe
Q 019359 181 DEADRMLDMG--FEPQIRKI---VTQIRPDRQTLYWSATWPREVETLARQFLR--NPYKVIIGSLELKANQSINQVVEVV 253 (342)
Q Consensus 181 DE~h~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
||||.+.+++ |+..+..+ ...+ +..+++++|||+.......+...++ ++..... ... . .+..+...
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~-r----~~l~~~v~ 218 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SFD-R----PNIRYMLM 218 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-CCC-C----TTEEEEEE
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-CCC-C----CceEEEEE
Confidence 9999998776 66665543 3334 4688999999998876554444333 3333222 111 1 12233334
Q ss_pred chhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019359 254 TEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (342)
Q Consensus 254 ~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 333 (342)
....+...+.+++.+. .++++||||+++++++.+++.|++.|+.+..+||++++++|..+++.|.+|+.+|||||++++
T Consensus 219 ~~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp ECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred eCCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 4456667788887765 677899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 019359 334 RGLGRITVC 342 (342)
Q Consensus 334 ~Gidip~v~ 342 (342)
+|||+|+|+
T Consensus 298 ~GiD~p~v~ 306 (523)
T 1oyw_A 298 MGINKPNVR 306 (523)
T ss_dssp TTTCCTTCC
T ss_pred CCCCccCcc
Confidence 999999985
No 18
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.7e-41 Score=278.04 Aligned_cols=238 Identities=67% Similarity=1.101 Sum_probs=216.9
Q ss_pred CChHHHHHhhhhcceeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
|++++++.++.+.++.+.|...|.|...|+++++++.+.+.+..+||..|+++|.++++.+.+|+++++.+|||+|||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHH
Q 019359 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 160 (342)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~ 160 (342)
|+++++..+..........++++||++|+++|+.|+.+.+++++...++.+..+.|+.........+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999998876544444457889999999999999999999998888899999999988887777777789999999999
Q ss_pred HHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEeccc
Q 019359 161 LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSL 238 (342)
Q Consensus 161 l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
+.+.+......+..++++|+||||.+.+.++...+..+...+++..|++++|||++..+..+...++.+|..+.+...
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999988877788899999999999999999999999999999999999999999999999999999999988877653
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.7e-40 Score=310.57 Aligned_cols=301 Identities=19% Similarity=0.224 Sum_probs=230.5
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHH-HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce
Q 019359 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (342)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
.+.+.|+++++++++.+.+...||..++++|.++++. +..++++++++|||+|||+++.++++..+... +.+
T Consensus 5 ~~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~ 77 (715)
T 2va8_A 5 LEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGK 77 (715)
T ss_dssp -CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSE
T ss_pred cccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCe
Confidence 3456799999999999999999999999999999998 78899999999999999999999888876642 568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEec
Q 019359 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (342)
++|++|+++|+.|+.+.++.+.. .++.+..+.|+....... ....+|+|+||+++...+......+..+++||+||
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECS
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEec
Confidence 99999999999999999966543 478888888876554431 12589999999999998887665578899999999
Q ss_pred cchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccc--------cceEEEEec
Q 019359 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQS--------INQVVEVVT 254 (342)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 254 (342)
+|.+.+..++..+..++..++ +.+++++|||++.. +.+.. +++.+. +.......+.... .........
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTCEE-EECCCCSSCEEEEEEEECSSTTEEEEEETT
T ss_pred hhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCCCc-cCCCCCCCCceEEEEecCCcccceeeecCc
Confidence 999887778888888877775 78999999998753 34444 333221 1110000000000 000010110
Q ss_pred --------hhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCC------------------------------
Q 019359 255 --------EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG------------------------------ 296 (342)
Q Consensus 255 --------~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------------------------ 296 (342)
.......+.+.+ ..++++||||+++++++.+++.|.+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 306 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKEL 306 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHH
T ss_pred chhhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHH
Confidence 122333333333 357899999999999999999998642
Q ss_pred ------CCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 297 ------WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 297 ------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 307 l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~ 358 (715)
T 2va8_A 307 LKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPART 358 (715)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSE
T ss_pred HHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceE
Confidence 2478999999999999999999999999999999999999999874
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.8e-40 Score=315.08 Aligned_cols=299 Identities=19% Similarity=0.193 Sum_probs=230.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHH-HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
+.|+++++++++.+.+..+||..|+++|.++++. +..++++++++|||+|||+++.++++..+... +.+++|
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~ 73 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVY 73 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEE
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEE
Confidence 3689999999999999999999999999999998 88899999999999999999988888777632 568999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
++|+++|+.|+.+.++++.. .++.+..+.|+....... ....+|+|+||+++...+......++.+++||+||+|.
T Consensus 74 i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred EcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 99999999999999976654 378888888876554331 23589999999999998877665678899999999999
Q ss_pred hhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccc--cccceEEEEec-----hhhH
Q 019359 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKAN--QSINQVVEVVT-----EAEK 258 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~ 258 (342)
+.+.+++..+..++..++.+.+++++|||+++. +.+.. +++.+. +.......+.. ........... ....
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSW 226 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EECCCCSSEEEEEEEETTEEEETTSCEEECSST
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cCCCCCCCcceEEEEeCCeeeccccchhhhhHH
Confidence 988788888888888876689999999998753 33433 443211 11100000000 00000111111 1223
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC------------------C---------------CCcEeecCC
Q 019359 259 YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD------------------G---------------WPALSIHGD 305 (342)
Q Consensus 259 ~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~------------------~---------------~~~~~~~~~ 305 (342)
...+.+.+ ..++++||||+++++++.++..|.+. + ..+..+||+
T Consensus 227 ~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~ 303 (720)
T 2zj8_A 227 EELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG 303 (720)
T ss_dssp THHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCC
Confidence 33333333 24789999999999999999998753 1 248899999
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 306 KNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 306 ~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
++..+|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 304 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~ 340 (720)
T 2zj8_A 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFR 340 (720)
T ss_dssp SCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceE
Confidence 9999999999999999999999999999999999863
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.8e-40 Score=312.95 Aligned_cols=297 Identities=20% Similarity=0.247 Sum_probs=224.6
Q ss_pred ccccCC--CCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 28 IFQEAN--FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 28 ~~~~~~--~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
.|++++ +++.+.+.+..+||..|+++|.++++.+..++++++++|||+|||+++.++++..+.. +.+++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577888 9999999999999999999999999999999999999999999999999988887654 567999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
++|+++|+.|+.+.++.+.. .++.+..+.|+...... .....+|+|+||+++...+......++.++++|+||+|.
T Consensus 74 i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 99999999999999976544 47888888887655432 123689999999999998887665578899999999999
Q ss_pred hhcCCChHHHHHHHhhc---CCCccEEEEEeecCchHHHHHHHhcCCCeEEEeccccccccc--ccceEEEEechh----
Q 019359 186 MLDMGFEPQIRKIVTQI---RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQ--SINQVVEVVTEA---- 256 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~---~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---- 256 (342)
+.+.+++..+..++..+ .++.+++++|||++. .+.+.. +++.+. +.......+... ............
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 226 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWRPVPLVEGVLCEGTLELFDGAFSTS 226 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCCSSCEEEEEECSSEEEEEETTEEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCCCccceEEEeeCCeeeccCcchhhh
Confidence 98877777777665554 568999999999875 334444 444322 111110000000 000011111111
Q ss_pred ---hHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC------------------------------CCCcEeec
Q 019359 257 ---EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD------------------------------GWPALSIH 303 (342)
Q Consensus 257 ---~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~------------------------------~~~~~~~~ 303 (342)
.....+.+.+ ..++++||||+++++++.+++.|.+. +..+..+|
T Consensus 227 ~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h 303 (702)
T 2p6r_A 227 RRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303 (702)
T ss_dssp EECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEEC
T ss_pred hhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEec
Confidence 1333444433 25789999999999999999988742 13578899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 304 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 304 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 304 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~ 342 (702)
T 2p6r_A 304 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARR 342 (702)
T ss_dssp TTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceE
Confidence 999999999999999999999999999999999999863
No 22
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=7.8e-40 Score=292.32 Aligned_cols=277 Identities=21% Similarity=0.286 Sum_probs=212.8
Q ss_pred HHHHHHH-cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 019359 38 CLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (342)
Q Consensus 38 ~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~ 116 (342)
+.+.+.. +|+ +|+++|.++++.+++++++++.+|||+|||++++++++..... +.++||++|+++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~--------~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC--------CCEEEEEECCHHHHHHH
Confidence 3444544 577 8999999999999999999999999999999888887776522 67899999999999999
Q ss_pred HHHHHHhcCCCCeEEEEEecCCcc---hhhHHhhcCC-CcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc----
Q 019359 117 QEEALKFGSRAGIRSTCIYGGAPK---GPQIRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD---- 188 (342)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~---- 188 (342)
.+.+++++. .++.+..++|+.+. ......+..+ ++|+|+||+++.+.+.. ..+..++++|+||||.+..
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccch
Confidence 999999988 78999999999876 4444555444 89999999999887664 4456899999999997653
Q ss_pred -------CCChHH-HHHHHhhcC-----------CCccEEEEEee-cCchHH-HHHHHhcCCCeEEEecccccccccccc
Q 019359 189 -------MGFEPQ-IRKIVTQIR-----------PDRQTLYWSAT-WPREVE-TLARQFLRNPYKVIIGSLELKANQSIN 247 (342)
Q Consensus 189 -------~~~~~~-~~~~~~~~~-----------~~~~~i~~SaT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
.++... +..++..++ ...+++++||| .+.... .+...+..-. .... ......+.
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~i~ 232 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT----VGRL-VSVARNIT 232 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCC----SSCC-CCCCCSEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccC----cCcc-ccccccch
Confidence 566666 777777765 78899999999 454433 2333332211 0000 01112222
Q ss_pred eEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcE-eecCCCCHHHHHHHHHHHhcCCCCEE
Q 019359 248 QVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPAL-SIHGDKNQSERDWVLAEFRSGRSPIM 326 (342)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vl 326 (342)
..+... ++...+.+++.+. ++++||||+++++++.+++.|++.|+.+. .+||. +|. ++.|++|+.+||
T Consensus 233 ~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 233 HVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred heeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 222222 3455666666663 58999999999999999999999999998 88884 344 999999999999
Q ss_pred EE----ecccccCCCCCC-CC
Q 019359 327 TA----TDVAARGLGRIT-VC 342 (342)
Q Consensus 327 v~----t~~~~~Gidip~-v~ 342 (342)
|| |+++++|+|+|+ |+
T Consensus 302 vat~s~T~~~~~GiDip~~v~ 322 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIK 322 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCC
T ss_pred EEecCcCchhhccCccccccC
Confidence 99 999999999998 64
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.2e-39 Score=309.46 Aligned_cols=301 Identities=21% Similarity=0.239 Sum_probs=197.4
Q ss_pred HHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 019359 39 LEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (342)
Q Consensus 39 ~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~ 118 (342)
.+.+..+|+..|+++|.++++.++.++++++.+|||+|||++++++++..+...+. +.+.++||++|+++|+.||.+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~ 79 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKS 79 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999887765432 123689999999999999999
Q ss_pred HHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc-CCCCccEEEEeccchhhcCC-ChHHHH
Q 019359 119 EALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMG-FEPQIR 196 (342)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~-~~~~~~ 196 (342)
.+++++...++.+..++|+.........+..+.+|+|+||+.|.+.+..... .+..++++|+||||++.+.. +...+.
T Consensus 80 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 80 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 9999988778999999998876655555556789999999999999887766 67889999999999986543 222222
Q ss_pred HHHhh-----cCCCccEEEEEeecCc-------h-HHHHHHH---------------------hcCCCeEEEeccccccc
Q 019359 197 KIVTQ-----IRPDRQTLYWSATWPR-------E-VETLARQ---------------------FLRNPYKVIIGSLELKA 242 (342)
Q Consensus 197 ~~~~~-----~~~~~~~i~~SaT~~~-------~-~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 242 (342)
..+.. ..+..+++++|||+.. . ...+... +...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22221 2456899999999861 1 1111111 11112111100000000
Q ss_pred ------------------------c-------------------------------------------------------
Q 019359 243 ------------------------N------------------------------------------------------- 243 (342)
Q Consensus 243 ------------------------~------------------------------------------------------- 243 (342)
.
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -------------------------------cccceEEE----------------EechhhHHHHHHHHHHhhc---CCC
Q 019359 244 -------------------------------QSINQVVE----------------VVTEAEKYNRLIKLLKEVM---DGS 273 (342)
Q Consensus 244 -------------------------------~~~~~~~~----------------~~~~~~~~~~l~~~l~~~~---~~~ 273 (342)
......+. ......+...+.+++.+.. .++
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 00000000 0013346666777777653 467
Q ss_pred cEEEEeCCchhHHHHHHHHHhCC----CCcEee--------cCCCCHHHHHHHHHHHhc-CCCCEEEEecccccCCCCCC
Q 019359 274 RILIFTETKKGCDQVTRQLRMDG----WPALSI--------HGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 274 ~~lvf~~~~~~~~~l~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~Gidip~ 340 (342)
++||||+++++++.+++.|++.+ +++..+ |++++..+|..+++.|++ |+.+|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 89999999999999999999987 888888 459999999999999998 99999999999999999999
Q ss_pred CC
Q 019359 341 VC 342 (342)
Q Consensus 341 v~ 342 (342)
++
T Consensus 480 v~ 481 (696)
T 2ykg_A 480 CN 481 (696)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.6e-39 Score=297.65 Aligned_cols=294 Identities=19% Similarity=0.213 Sum_probs=174.4
Q ss_pred CCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 46 ~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
+...|+++|.++++.++.++++++.+|||+|||++++++++..+...+. +.+.++||++|+++|+.||.+.++++..
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4458999999999999999999999999999999999999888876532 1267899999999999999999999988
Q ss_pred CCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc-CCCCccEEEEeccchhhcCCChHHH-HHHHhh-c
Q 019359 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMGFEPQI-RKIVTQ-I 202 (342)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~~~~~~-~~~~~~-~ 202 (342)
..++.+..++|+.........+..+++|+|+||+++.+.+..... .+..++++|+||||++.+.+....+ ..+... +
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 778999999998876666555556689999999999999888776 6888999999999998776532222 122221 1
Q ss_pred ---CCCccEEEEEeecCch-----------HHHHHHH------------------hcCCCeEEEeccccccccc------
Q 019359 203 ---RPDRQTLYWSATWPRE-----------VETLARQ------------------FLRNPYKVIIGSLELKANQ------ 244 (342)
Q Consensus 203 ---~~~~~~i~~SaT~~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~------ 244 (342)
.+..+++++|||+... +..+... +...+..............
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 3467899999998431 1111111 1111211111100000000
Q ss_pred ----c---------------------c-----ceEEE-------------------------------------------
Q 019359 245 ----S---------------------I-----NQVVE------------------------------------------- 251 (342)
Q Consensus 245 ----~---------------------~-----~~~~~------------------------------------------- 251 (342)
. . ..+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 00000
Q ss_pred ----------------------------------------------EechhhHHHHHHHHHHhh---cCCCcEEEEeCCc
Q 019359 252 ----------------------------------------------VVTEAEKYNRLIKLLKEV---MDGSRILIFTETK 282 (342)
Q Consensus 252 ----------------------------------------------~~~~~~~~~~l~~~l~~~---~~~~~~lvf~~~~ 282 (342)
......+...+.+.+.+. ..++++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 000133555566666554 3478999999999
Q ss_pred hhHHHHHHHHHhC------------CCCcEeecCCCCHHHHHHHHHHHhc-CCCCEEEEecccccCCCCCCCC
Q 019359 283 KGCDQVTRQLRMD------------GWPALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 283 ~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.+++.+++.|++. |.....+||+++..+|..+++.|++ |+.+|||||+++++|+|+|+++
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~ 473 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN 473 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------C
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCC
Confidence 9999999999876 4445566778999999999999999 9999999999999999999975
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-39 Score=312.44 Aligned_cols=295 Identities=16% Similarity=0.166 Sum_probs=222.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc
Q 019359 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (342)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 107 (342)
.|+..++++.+...+...++-.|+++|.++++.+..++++++++|||+|||++|.++++..+.. +.+++|++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEc
Confidence 4566666665555555545558999999999999999999999999999999999998888754 67899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 108 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
|+++|+.|+.+.+.++.. .+..+.|+.+.. .+.+|+|+||+.|.+.+......+..+++||+||||++.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999998644 455577766543 348999999999999988876667789999999999998
Q ss_pred cCCChHHHHHHHhhcCCCccEEEEEeecCchH--HHHHHHhcCCCeEEEecccccccccc------cceEEEEech----
Q 019359 188 DMGFEPQIRKIVTQIRPDRQTLYWSATWPREV--ETLARQFLRNPYKVIIGSLELKANQS------INQVVEVVTE---- 255 (342)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---- 255 (342)
+.+++..+..++..++...+++++|||++... ..+.......+..+............ ....+.....
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~ 383 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTF 383 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEE
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccch
Confidence 88888899999999999999999999987653 34445555555444433211110000 0000000000
Q ss_pred ------------------------------------------hhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHH
Q 019359 256 ------------------------------------------AEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLR 293 (342)
Q Consensus 256 ------------------------------------------~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~ 293 (342)
......++..+... ...++||||++++.++.++..|.
T Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~~L~ 462 (1108)
T 3l9o_A 384 REENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMS 462 (1108)
T ss_dssp CHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHHHHH
Confidence 22222333333332 35689999999999999999986
Q ss_pred hCCCC---------------------------------------cEeecCCCCHHHHHHHHHHHhcCCCCEEEEeccccc
Q 019359 294 MDGWP---------------------------------------ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAAR 334 (342)
Q Consensus 294 ~~~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 334 (342)
..++. +..+||++++.+|..+++.|++|.++|||||+++++
T Consensus 463 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~ 542 (1108)
T 3l9o_A 463 KLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSI 542 (1108)
T ss_dssp SHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCS
T ss_pred hccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhc
Confidence 53221 688999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 019359 335 GLGRITVC 342 (342)
Q Consensus 335 Gidip~v~ 342 (342)
|||+|+++
T Consensus 543 GIDiP~v~ 550 (1108)
T 3l9o_A 543 GLNMPAKT 550 (1108)
T ss_dssp CCCC--CE
T ss_pred CCCCCCce
Confidence 99999874
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.5e-38 Score=289.67 Aligned_cols=291 Identities=20% Similarity=0.218 Sum_probs=192.0
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~ 128 (342)
.|+++|.++++.++.++++++.+|||+|||++++++++..+...+. +.+.++||++|+++|+.||.+.++++....+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 7999999999999999999999999999999999999888876532 1267899999999999999999999988788
Q ss_pred eEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc-CCCCccEEEEeccchhhcCC-ChHHHHHHHhhc----
Q 019359 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQI---- 202 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~---- 202 (342)
+.+..++|+.........+..+++|+|+||+++.+.+..... .+..++++|+||||++.+.+ +...+.......
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSC
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccc
Confidence 999999999877666555556789999999999999888766 67889999999999987654 222222332221
Q ss_pred -CCCccEEEEEeecCchH--------HHHH--HHhcCCCeEEEeccccccc----ccccceEEE----------------
Q 019359 203 -RPDRQTLYWSATWPREV--------ETLA--RQFLRNPYKVIIGSLELKA----NQSINQVVE---------------- 251 (342)
Q Consensus 203 -~~~~~~i~~SaT~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------------- 251 (342)
.+..+++++|||+.... ..+. ...+............... .........
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 24578999999985421 1111 1111111111100000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 019359 252 -------------------------------------------------------------------------------- 251 (342)
Q Consensus 252 -------------------------------------------------------------------------------- 251 (342)
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred ---------------------------------------------EechhhHHHHHHHHHHhhc---CCCcEEEEeCCch
Q 019359 252 ---------------------------------------------VVTEAEKYNRLIKLLKEVM---DGSRILIFTETKK 283 (342)
Q Consensus 252 ---------------------------------------------~~~~~~~~~~l~~~l~~~~---~~~~~lvf~~~~~ 283 (342)
......+...+.+++.+.. .++++||||+++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 0001335555666665542 4689999999999
Q ss_pred hHHHHHHHHHhCC----CC--------cEeecCCCCHHHHHHHHHHHhc-CCCCEEEEecccccCCCCCCCC
Q 019359 284 GCDQVTRQLRMDG----WP--------ALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 284 ~~~~l~~~L~~~~----~~--------~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+++.+++.|.+.+ +. ...+||+++..+|..+++.|++ |+.+|||||+++++|+|+|+++
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~ 472 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECN 472 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCS
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCC
Confidence 9999999999763 33 3445569999999999999999 9999999999999999999875
No 27
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.4e-37 Score=278.99 Aligned_cols=284 Identities=22% Similarity=0.253 Sum_probs=209.7
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~ 128 (342)
.|+++|.+++..+..+ ++++.+|||+|||++++.++...+.. .+.++||++|+++|+.||.+++.++....+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999888 99999999999999998888777652 266899999999999999999999865455
Q ss_pred eEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccE
Q 019359 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
..+..++|+........ ....++|+|+||+.+...+......+..+++||+||||++.+......+........+..++
T Consensus 81 ~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 67888888766554322 22357999999999999888777777889999999999987654334444444445668899
Q ss_pred EEEEeecCchHHH---HHHHhcCCCeEEEeccccccccc---ccce-EE-------------------------------
Q 019359 209 LYWSATWPREVET---LARQFLRNPYKVIIGSLELKANQ---SINQ-VV------------------------------- 250 (342)
Q Consensus 209 i~~SaT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------------------- 250 (342)
+++||||...... +...+..... ............ .... ..
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHI-EYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEE-EECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEecCCCCCcHHHHHHHHhcChhee-eccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999744322 2222211111 100000000000 0000 00
Q ss_pred --------------------------------------------------------------------------------
Q 019359 251 -------------------------------------------------------------------------------- 250 (342)
Q Consensus 251 -------------------------------------------------------------------------------- 250 (342)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred ------------------EEechhhHHHHHHHHHHhh---cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecC-----
Q 019359 251 ------------------EVVTEAEKYNRLIKLLKEV---MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHG----- 304 (342)
Q Consensus 251 ------------------~~~~~~~~~~~l~~~l~~~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~----- 304 (342)
.......+...+.+++.+. ..++++||||++++.++.+++.|++.|+++..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~ 398 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKE 398 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccc
Confidence 0002233556666777665 35889999999999999999999999999999999
Q ss_pred ---CCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 305 ---DKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 305 ---~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 399 ~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~ 439 (494)
T 1wp9_A 399 NDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVD 439 (494)
T ss_dssp ------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCC
T ss_pred ccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCC
Confidence 99999999999999999999999999999999999874
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.7e-37 Score=296.10 Aligned_cols=296 Identities=19% Similarity=0.212 Sum_probs=180.2
Q ss_pred HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+|+..|+++|.++++.+..++++++.+|||+|||++++++++..+...+. +.+.++||++|+++|+.||.+.++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999888876532 12678999999999999999999999
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc-CCCCccEEEEeccchhhcCCC-hHHHHHHHhh
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMGF-EPQIRKIVTQ 201 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~~-~~~~~~~~~~ 201 (342)
....++.+..++|+.........+..+++|+|+||+++.+.+..... .+..+++||+||||++.+.+. ...+..+...
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred cccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88778999999999877666666666799999999999999887766 678899999999999876542 2222222222
Q ss_pred ----cCCCccEEEEEeecCc-----------hHHHHHH------------------HhcCCCeEEEeccccccccc----
Q 019359 202 ----IRPDRQTLYWSATWPR-----------EVETLAR------------------QFLRNPYKVIIGSLELKANQ---- 244 (342)
Q Consensus 202 ----~~~~~~~i~~SaT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~---- 244 (342)
..+..+++++|||+.. .+..+.. .++..+..............
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 1456789999999842 1111111 11122211111000000000
Q ss_pred ----------ccce----------------------EEE-----------------------------------------
Q 019359 245 ----------SINQ----------------------VVE----------------------------------------- 251 (342)
Q Consensus 245 ----------~~~~----------------------~~~----------------------------------------- 251 (342)
.... +..
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000 000
Q ss_pred ------------------------------------------------EechhhHHHHHHHHHHhh---cCCCcEEEEeC
Q 019359 252 ------------------------------------------------VVTEAEKYNRLIKLLKEV---MDGSRILIFTE 280 (342)
Q Consensus 252 ------------------------------------------------~~~~~~~~~~l~~~l~~~---~~~~~~lvf~~ 280 (342)
......+...+.+.+.+. ..++++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 000123445555666543 34689999999
Q ss_pred CchhHHHHHHHHHhC------------CCCcEeecCCCCHHHHHHHHHHHhc-CCCCEEEEecccccCCCCCCCC
Q 019359 281 TKKGCDQVTRQLRMD------------GWPALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 281 ~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~Gidip~v~ 342 (342)
++.+++.+++.|++. |.....+||+++..+|..+++.|++ |+.+|||||+++++|||+|+++
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~ 714 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN 714 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCS
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCC
Confidence 999999999999874 4455667888999999999999999 9999999999999999999985
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=293.53 Aligned_cols=277 Identities=17% Similarity=0.220 Sum_probs=212.7
Q ss_pred HHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 019359 42 IAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (342)
Q Consensus 42 l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~ 121 (342)
...++| .|+++|.++++.+.+++++++++|||+|||+++.++++..+.. +.++||++|+++|+.|+.+.+.
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHH
Confidence 345677 5999999999999999999999999999999998888777643 6789999999999999999999
Q ss_pred HhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhh
Q 019359 122 KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (342)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (342)
++.. .+..+.|+..... ..+|+|+||+.+.+.+......+..+++||+||+|.+.+.+++..+..++..
T Consensus 151 ~~~~----~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~ 219 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL 219 (1010)
T ss_dssp HHHS----CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH
T ss_pred HHhC----CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHh
Confidence 8644 5566777665432 4789999999999988777667788999999999999998889899999999
Q ss_pred cCCCccEEEEEeecCchHH--HHHHHhcCCCeEEEecccccccccccceEEE---------Eech---------------
Q 019359 202 IRPDRQTLYWSATWPREVE--TLARQFLRNPYKVIIGSLELKANQSINQVVE---------VVTE--------------- 255 (342)
Q Consensus 202 ~~~~~~~i~~SaT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--------------- 255 (342)
++...+++++|||+++..+ ..+....+.+..+....... .....++. ....
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 9889999999999876532 22233334444433322110 00111110 0000
Q ss_pred -------------------------------hhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCC------
Q 019359 256 -------------------------------AEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWP------ 298 (342)
Q Consensus 256 -------------------------------~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~------ 298 (342)
......+...+... ...++||||++++.++.+++.|.+.++.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 11122233333332 3458999999999999999999775442
Q ss_pred ---------------------------------cEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 299 ---------------------------------ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 299 ---------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce
Confidence 67899999999999999999999999999999999999999863
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=6e-37 Score=298.86 Aligned_cols=271 Identities=21% Similarity=0.279 Sum_probs=213.1
Q ss_pred HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+|| .|+++|.++++.++.++++++++|||+|||++++.+++..+.. +.++||++|+++|+.|+.+.++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~--------~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------CCeEEEEechHHHHHHHHHHHHHh
Confidence 4788 7999999999999999999999999999999887777776632 678999999999999999999998
Q ss_pred cCCCCeEEEEEecCCcc---hhhHHhhcCC-CcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhc-----------
Q 019359 124 GSRAGIRSTCIYGGAPK---GPQIRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD----------- 188 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~----------- 188 (342)
+ ..++.+..++|+.+. ......+..+ ++|+|+||++|.+++.. ..+..++++|+||||.+..
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHh
Confidence 7 678899999999887 5555666665 89999999999887664 4567899999999987553
Q ss_pred CCChHH-HHHHHhhcC-----------CCccEEEEEee-cCchHH-HHHHHhcCCCeEEEecccccccccccceEEEEec
Q 019359 189 MGFEPQ-IRKIVTQIR-----------PDRQTLYWSAT-WPREVE-TLARQFLRNPYKVIIGSLELKANQSINQVVEVVT 254 (342)
Q Consensus 189 ~~~~~~-~~~~~~~~~-----------~~~~~i~~SaT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
.++... +..++..++ ...|++++||| .+..+. .+...... +.+.... .....+...+...
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS- 295 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec-
Confidence 677777 778887776 78899999999 454433 23333332 1111111 1122222333222
Q ss_pred hhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcE-eecCCCCHHHHHHHHHHHhcCCCCEEEE----e
Q 019359 255 EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPAL-SIHGDKNQSERDWVLAEFRSGRSPIMTA----T 329 (342)
Q Consensus 255 ~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vlv~----t 329 (342)
++...+.+++... ++++||||++++.++.++..|++.|+++. .+|| +|.. ++.|++|+.+|||| |
T Consensus 296 --~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~T 365 (1104)
T 4ddu_A 296 --RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYY 365 (1104)
T ss_dssp --CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTH
T ss_pred --CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCC
Confidence 3555666666663 58999999999999999999999999998 9998 2455 99999999999999 9
Q ss_pred cccccCCCCCC-CC
Q 019359 330 DVAARGLGRIT-VC 342 (342)
Q Consensus 330 ~~~~~Gidip~-v~ 342 (342)
+++++|+|+|+ |+
T Consensus 366 dvlarGIDip~~V~ 379 (1104)
T 4ddu_A 366 GKLTRGVDLPERIK 379 (1104)
T ss_dssp HHHCCSCCCTTTCC
T ss_pred CeeEecCcCCCCCC
Confidence 99999999999 64
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-36 Score=294.20 Aligned_cols=296 Identities=19% Similarity=0.221 Sum_probs=180.2
Q ss_pred HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
-.|+..|+++|.++++.+..|+++++.+|||+|||++++++++..+...+. +.+.++||++|+++|+.||.+.++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS---SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 346779999999999999999999999999999999999998887766432 12668999999999999999999999
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc-CCCCccEEEEeccchhhcCC-ChHHHHHHHhh
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQ 201 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~ 201 (342)
....++.+..++|+.........+..+++|+|+||+++.+.+..... .+..+++||+||||++...+ +...+..+...
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88778999999998866655445555689999999999999887666 67789999999999987654 22222222222
Q ss_pred ----cCCCccEEEEEeecCch-----------HHHHH------------------HHhcCCCeEEEeccccccccc----
Q 019359 202 ----IRPDRQTLYWSATWPRE-----------VETLA------------------RQFLRNPYKVIIGSLELKANQ---- 244 (342)
Q Consensus 202 ----~~~~~~~i~~SaT~~~~-----------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~---- 244 (342)
..+..+++++|||+... +..+. ..+...+..............
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 14457899999998421 11111 111222222211110000000
Q ss_pred ----------c------------cc----------eEEE-----------------------------------------
Q 019359 245 ----------S------------IN----------QVVE----------------------------------------- 251 (342)
Q Consensus 245 ----------~------------~~----------~~~~----------------------------------------- 251 (342)
. .. .+..
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00 0000
Q ss_pred ------------------------------------------------EechhhHHHHHHHHHHhhc---CCCcEEEEeC
Q 019359 252 ------------------------------------------------VVTEAEKYNRLIKLLKEVM---DGSRILIFTE 280 (342)
Q Consensus 252 ------------------------------------------------~~~~~~~~~~l~~~l~~~~---~~~~~lvf~~ 280 (342)
......+...+.+++.+.. .++++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0001234445555665542 4689999999
Q ss_pred CchhHHHHHHHHHhC------------CCCcEeecCCCCHHHHHHHHHHHhc-CCCCEEEEecccccCCCCCCCC
Q 019359 281 TKKGCDQVTRQLRMD------------GWPALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 281 ~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~Gidip~v~ 342 (342)
++++++.+++.|.+. |.....+||+++..+|..+++.|++ |+++|||||+++++|||+|+++
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~ 714 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN 714 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCS
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCC
Confidence 999999999999986 4445566888999999999999999 9999999999999999999985
No 32
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=248.81 Aligned_cols=216 Identities=51% Similarity=0.883 Sum_probs=185.2
Q ss_pred eccCCCcccccccc-CCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCC-c
Q 019359 18 EGHDVPRPIRIFQE-ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPR-L 95 (342)
Q Consensus 18 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~-~ 95 (342)
++...|.|...|++ +++++.+.+++...||..|+++|.++++.+.+++++++.+|||+|||++|+++++..+..... .
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 45567899999999 799999999999999999999999999999999999999999999999999998887754311 1
Q ss_pred cCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 96 VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 96 ~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
....+.++||++|+++|+.|+.+.++++. ..++.+..+.|+.........+..+++|+|+||+++.+.+......+..+
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 11237789999999999999999999986 45788888999888877777777889999999999999988877788899
Q ss_pred cEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEE
Q 019359 176 TYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVI 234 (342)
Q Consensus 176 ~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 234 (342)
+++|+||||++.+.++...+..++..++++.|++++|||+++.+..+...++.+|..+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999998999999999999999999999999887664
No 33
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.7e-36 Score=249.87 Aligned_cols=212 Identities=32% Similarity=0.531 Sum_probs=177.2
Q ss_pred ccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCC
Q 019359 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (342)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~ 98 (342)
...++.+...|+++++++.+.+.+..+||..|+++|.++++.+.+++++++.+|||+|||++|+++++..+....
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~----- 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF----- 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS-----
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-----
Confidence 345677888899999999999999999999999999999999999999999999999999999999988875432
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCC-CcEEEeChHHHHHHHhccccCCCCccE
Q 019359 99 EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRVTY 177 (342)
Q Consensus 99 ~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (342)
.+.++||++|+++|+.|+.+.+++++...++.+..+.|+.........+..+ ++|+|+||+++.+.+......+..+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 2678999999999999999999999888888888888887766665555554 899999999999998887777888999
Q ss_pred EEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEe
Q 019359 178 LVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (342)
Q Consensus 178 iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 235 (342)
+|+||||.+.+.++...+..+...++...|++++|||++..+..+...++.+|..+.+
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999889999999999999999999999998877654
No 34
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-36 Score=246.79 Aligned_cols=208 Identities=36% Similarity=0.569 Sum_probs=183.6
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEE
Q 019359 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (342)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vl 104 (342)
|...|+++++++.+.+.+..+|+..|+++|.++++.+.+++++++.+|||+|||++|+++++..+.... .+.++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-----~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER-----AEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS-----CSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc-----CCceEE
Confidence 456799999999999999999999999999999999999999999999999999999999988876532 267899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCC----CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEE
Q 019359 105 VLAPTRELAVQIQEEALKFGSRA----GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (342)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (342)
|++|+++|+.|+.+.++++.... ++.+..+.|+.........+..+++|+|+||+++.+.+......+..++++|+
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999987765 67888888887766555555567899999999999988887777888999999
Q ss_pred eccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecc
Q 019359 181 DEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGS 237 (342)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 237 (342)
||||.+.+.++...+..+...+++..|++++|||++..+..+...++.+|..+....
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999988899999999999999999999999998876654
No 35
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=7.7e-36 Score=241.02 Aligned_cols=202 Identities=32% Similarity=0.587 Sum_probs=182.0
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEE
Q 019359 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (342)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil 106 (342)
+.|+++++++.+.+.+..+||..|+++|.++++.+.+++++++.+|||+|||++++++++..+.... .+.++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-----~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK-----DNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS-----CSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC-----CCeeEEEE
Confidence 4699999999999999999999999999999999999999999999999999999999988775432 26789999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 107 APTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
+|+++|+.|+.+.++++.... +..+..+.|+............+++|+|+||+++.+.+......+..++++|+||||.
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999987766 7888888888877777677777899999999999999888777788999999999999
Q ss_pred hhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEE
Q 019359 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKV 233 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 233 (342)
+.+.++...+..+...+++..+++++|||++..+..+...++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 998889999999999998889999999999999999999999888653
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=295.20 Aligned_cols=291 Identities=23% Similarity=0.278 Sum_probs=196.1
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHH-HHHHHHhcCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI-QEEALKFGSRA 127 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~-~~~~~~~~~~~ 127 (342)
.|+++|.++++.++.++++++.+|||+|||++|+++++..+..... .+.+.++||++|+++|+.|| .+.++++...
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 8999999999999999999999999999999999998887655321 01136799999999999999 9999998765
Q ss_pred CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHH------hccccCCCCccEEEEeccchhhcCC-ChHHHHHHHh
Q 019359 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML------EAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVT 200 (342)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~------~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~ 200 (342)
++.+..++|+.........+....+|+|+||+.|.+.+ ......+..+++||+||||++...+ +...+..+..
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 58888899987776665555567999999999999887 3444567789999999999875433 3333333322
Q ss_pred hc-------------CCCccEEEEEeecCch--------H---HHHHHHhc------------------CCCeEEEeccc
Q 019359 201 QI-------------RPDRQTLYWSATWPRE--------V---ETLARQFL------------------RNPYKVIIGSL 238 (342)
Q Consensus 201 ~~-------------~~~~~~i~~SaT~~~~--------~---~~~~~~~~------------------~~~~~~~~~~~ 238 (342)
.. .+..+++++|||+... . ..+...+- ..|........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 21 1457899999999762 1 11111111 11111111000
Q ss_pred ccccc----------------------cccc-----eE------------------------------------------
Q 019359 239 ELKAN----------------------QSIN-----QV------------------------------------------ 249 (342)
Q Consensus 239 ~~~~~----------------------~~~~-----~~------------------------------------------ 249 (342)
..... .... .+
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000 00
Q ss_pred -------------------------EEEec-------------------------hhhHHHHHHHHHHhhc---C-CCcE
Q 019359 250 -------------------------VEVVT-------------------------EAEKYNRLIKLLKEVM---D-GSRI 275 (342)
Q Consensus 250 -------------------------~~~~~-------------------------~~~~~~~l~~~l~~~~---~-~~~~ 275 (342)
..... ...+...+.+.+.+.. . ++++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 00000 0111112233333322 2 6899
Q ss_pred EEEeCCchhHHHHHHHHHhC------CCCcEeecCC--------CCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 276 LIFTETKKGCDQVTRQLRMD------GWPALSIHGD--------KNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 276 lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
||||+++++++.+++.|++. |+++..+||+ ++..+|..+++.|++|+.+|||||+++++|||+|++
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v 483 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKEC 483 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccC
Confidence 99999999999999999987 8999999999 999999999999999999999999999999999998
Q ss_pred C
Q 019359 342 C 342 (342)
Q Consensus 342 ~ 342 (342)
+
T Consensus 484 ~ 484 (699)
T 4gl2_A 484 N 484 (699)
T ss_dssp C
T ss_pred C
Confidence 5
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.7e-36 Score=290.28 Aligned_cols=278 Identities=18% Similarity=0.175 Sum_probs=213.4
Q ss_pred HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.++| .|+++|.++++.+.+++++++.+|||+|||+++++++...+.. +.+++|++|+++|+.|+.+.+.++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4677 6999999999999999999999999999999988887766543 678999999999999999999986
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcC
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (342)
.. ++.+..++|+..... ..+|+|+||+.|.+.+......+..+++||+||||.+.+++++..+..++..++
T Consensus 106 ~~--~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp C----CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred cC--CCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 43 567788888765432 379999999999998887766778899999999999999999999999999999
Q ss_pred CCccEEEEEeecCchHHHHHHHhc---CCCeEEEeccccccccc-cc---ce----------------------------
Q 019359 204 PDRQTLYWSATWPREVETLARQFL---RNPYKVIIGSLELKANQ-SI---NQ---------------------------- 248 (342)
Q Consensus 204 ~~~~~i~~SaT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~---~~---------------------------- 248 (342)
+..+++++|||+++.. .+..++. ..+..+........+.. .+ ..
T Consensus 177 ~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (997)
T 4a4z_A 177 QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESA 255 (997)
T ss_dssp TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----
T ss_pred cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccc
Confidence 9999999999987653 2333221 12222211110000000 00 00
Q ss_pred ----------------------------------------------------------EEEEechhhHHHHHHHHHHhhc
Q 019359 249 ----------------------------------------------------------VVEVVTEAEKYNRLIKLLKEVM 270 (342)
Q Consensus 249 ----------------------------------------------------------~~~~~~~~~~~~~l~~~l~~~~ 270 (342)
+............+...+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~- 334 (997)
T 4a4z_A 256 KGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR- 334 (997)
T ss_dssp -------------------------------------------------------------CCCCTTHHHHHHHHHHHT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-
Confidence 000001223344566666553
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhCCC---------------------------------------CcEeecCCCCHHHH
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMDGW---------------------------------------PALSIHGDKNQSER 311 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~~~~~~~~~~r 311 (342)
...++||||++++.++.++..|.+.++ .+..+||++++.+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 457899999999999999999987655 46899999999999
Q ss_pred HHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 312 DWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 312 ~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
..+++.|.+|+++|||||+++++|||+|++
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~ 444 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPTR 444 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCCS
T ss_pred HHHHHHHHCCCCcEEEEchHhhCCCCCCCc
Confidence 999999999999999999999999999985
No 38
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.8e-36 Score=248.47 Aligned_cols=208 Identities=44% Similarity=0.688 Sum_probs=187.0
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
+.+...|+++++++.+.+.+..+||..|+++|.++++.+..++++++.+|||+|||++|+++++..+..... +.+
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~-----~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ-----RLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC-----SSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC-----Cce
Confidence 445667999999999999999999999999999999999999999999999999999999999888766432 568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc-cccCCCCccEEEEe
Q 019359 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYLVLD 181 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIvD 181 (342)
+||++|+++|+.|+.+.+++++...++.+..+.|+.........+..+++|+|+||+++.+.+.. ....+..++++|+|
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 99999999999999999999988778899999998887777667777899999999999998776 44567889999999
Q ss_pred ccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEe
Q 019359 182 EADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (342)
Q Consensus 182 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 235 (342)
|||++.+.++...+..++..++...+++++|||++..+..+...++.+|..+.+
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999889999999999999999999999999987654
No 39
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=6.1e-36 Score=245.45 Aligned_cols=211 Identities=30% Similarity=0.481 Sum_probs=179.6
Q ss_pred ccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCC
Q 019359 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (342)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~ 98 (342)
+...+.+...|+++++++.+.+.+..+||..|+++|.++++.+..++++++.+|||+|||++|+++++..+....
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~----- 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN----- 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS-----
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-----
Confidence 556677888999999999999999999999999999999999999999999999999999999999988875432
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccE
Q 019359 99 EGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTY 177 (342)
Q Consensus 99 ~~~~vlil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (342)
.+.++||++|+++|+.|+.+.++++.... ++.+..+.|+.........+ .+++|+|+||+++.+.+......+..+++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 26789999999999999999999987654 78888888887765554444 46899999999999998877777788999
Q ss_pred EEEeccchhhcCC-ChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEe
Q 019359 178 LVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (342)
Q Consensus 178 iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 235 (342)
+|+||||++.+.+ |...+..+...++...|++++|||+++.+..+...++.+|..+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999887 999999999999888999999999999988888888888876543
No 40
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.7e-36 Score=250.49 Aligned_cols=227 Identities=43% Similarity=0.681 Sum_probs=196.2
Q ss_pred hcceeeeccCCCc--cccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 12 RREITVEGHDVPR--PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 12 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
+....+.+...+. +...|+++++++.+.+++...||..|+++|.++++.+..++++++.+|||+|||++|+++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4455666777766 88899999999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCc----cCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHH
Q 019359 90 SAQPRL----VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML 165 (342)
Q Consensus 90 ~~~~~~----~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~ 165 (342)
...... ....+.++||++|+++|+.|+.+.+++++...++.+..+.|+.........+..+++|+|+||+++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 654211 1122568999999999999999999999888888999999998887777777778999999999999998
Q ss_pred hccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc--CC--CccEEEEEeecCchHHHHHHHhcCCCeEEEeccc
Q 019359 166 EAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSL 238 (342)
Q Consensus 166 ~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
......+..++++|+||||++.+.++...+..++..+ +. ..|++++|||+++.+..+...++.++..+.+...
T Consensus 166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 8877778899999999999999999999999998853 33 6789999999999999999999999888776543
No 41
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1e-35 Score=243.49 Aligned_cols=212 Identities=31% Similarity=0.544 Sum_probs=180.3
Q ss_pred cCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCC
Q 019359 20 HDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE 99 (342)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~ 99 (342)
...+.+...|+++++++.+.+.+..+||..|+++|.++++.+.+++++++.+|||+|||++++++++..+.... .
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~-----~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----K 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-----C
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-----C
Confidence 34566778899999999999999999999999999999999999999999999999999999999988875533 2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEE
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLV 179 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 179 (342)
+.++||++|+++|+.|+.+.++++....++.+..+.|+.........+.. ++|+|+||+++.+.+......+..++++|
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 67899999999999999999999988888898888888776555444433 89999999999999888777788899999
Q ss_pred EeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecc
Q 019359 180 LDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGS 237 (342)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 237 (342)
+||||++.+.++...+..+...+++..|++++|||++..+..+...++.+|..+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999988999999999999999999999999988766543
No 42
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=243.85 Aligned_cols=227 Identities=32% Similarity=0.471 Sum_probs=191.6
Q ss_pred hHHHHHhhhhcceeeeccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhH
Q 019359 3 ETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~ 82 (342)
+++++.+.+++.. ..+.+...|+++++++.+.+.+...|+..|+++|.++++.+..++++++.+|||+|||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4566666665543 22456778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHH
Q 019359 83 LPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 162 (342)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~ 162 (342)
++++..+...... ...+.++||++|+++|+.|+.+.++.++...++.+..+.|+.........+ .+++|+|+||+++.
T Consensus 81 ~~~l~~l~~~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQWT-STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTCC-GGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhccc-ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 9998877543211 112678999999999999999999999888888999999988776655544 46899999999999
Q ss_pred HHHhcc-ccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEec
Q 019359 163 DMLEAQ-HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (342)
Q Consensus 163 ~~~~~~-~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
+.+... ...+..++++|+||||++.++++...+..+...++...|++++|||++..+..+...++.+|..+.+.
T Consensus 159 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 887664 35567899999999999999999999999999998899999999999999999999999998877654
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.9e-35 Score=287.13 Aligned_cols=285 Identities=20% Similarity=0.221 Sum_probs=210.3
Q ss_pred CCCHHHHHHH-HHcCCCCCcHHHHhhHHHHhc----CC--CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 33 NFPDYCLEVI-AKLGFVEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 33 ~~~~~~~~~l-~~~~~~~l~~~Q~~~~~~~~~----~~--~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
+.++...+.+ ..++| .++++|.++++.+.. ++ ++++++|||+|||.+++.+++..+.. +.+++|
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vlv 657 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVAV 657 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEEE
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEEE
Confidence 3444444444 45788 579999999998876 55 89999999999999988877766543 668999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh---HHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEe
Q 019359 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLD 181 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvD 181 (342)
++|+++|+.||.+.+.++....++.+..+++....... ...+.. ..+|+|+|++.+. ....+..++++|+|
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVD 732 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEe
Confidence 99999999999999998777677888888776544333 233334 4899999997553 23456789999999
Q ss_pred ccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHH
Q 019359 182 EADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNR 261 (342)
Q Consensus 182 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (342)
|+|++ +......+..+..+.++++||||+.+....+....+.+.. .+.... .....+...+..... ...
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~--~i~~~~-~~r~~i~~~~~~~~~---~~i 801 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS--IIATPP-ARRLAVKTFVREYDS---MVV 801 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEE--ECCCCC-CBCBCEEEEEEECCH---HHH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCce--EEecCC-CCccccEEEEecCCH---HHH
Confidence 99994 4444555566667789999999987665444443333222 221111 111122222222222 222
Q ss_pred HHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
...+++....+++++|||+++++++.+++.|++. +..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 3334444556899999999999999999999987 78899999999999999999999999999999999999999999
Q ss_pred CCC
Q 019359 340 TVC 342 (342)
Q Consensus 340 ~v~ 342 (342)
+++
T Consensus 882 ~v~ 884 (1151)
T 2eyq_A 882 TAN 884 (1151)
T ss_dssp TEE
T ss_pred CCc
Confidence 864
No 44
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=245.83 Aligned_cols=229 Identities=34% Similarity=0.574 Sum_probs=194.4
Q ss_pred HHHHhhhhcceeeeccCCCccccccccC----CCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 5 EVKMYRARREITVEGHDVPRPIRIFQEA----NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
++..++.+.++.+.+...|.|...|+++ ++++.+.+.+...||..|+++|.++++.+.+++++++.+|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4678888999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH-HhhcCCCcEEEeChH
Q 019359 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI-RDLRRGVEIVIATPG 159 (342)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~T~~ 159 (342)
|+++++..+..... .+.++||++|+++|+.|+.+.++++....++.+..+.++....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQPAN----KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSCCS----SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhccc----CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 99999988764321 2678999999999999999999999888888887776654332221 222346899999999
Q ss_pred HHHHHHhcc--ccCCCCccEEEEeccchhhc---CCChHHHHHHHhhc-CCCccEEEEEeecCchHHHHHHHhcCCCeEE
Q 019359 160 RLIDMLEAQ--HTNLRRVTYLVLDEADRMLD---MGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNPYKV 233 (342)
Q Consensus 160 ~l~~~~~~~--~~~~~~~~~iIvDE~h~~~~---~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 233 (342)
++..++... ...+..++++|+||||.+.+ .++...+..++..+ +...+++++|||++..+..+...++.+|..+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999988776 35678899999999999987 45677777776655 4578999999999999999999999999988
Q ss_pred Eecc
Q 019359 234 IIGS 237 (342)
Q Consensus 234 ~~~~ 237 (342)
.+..
T Consensus 239 ~~~~ 242 (245)
T 3dkp_A 239 SIGA 242 (245)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8764
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-36 Score=283.05 Aligned_cols=282 Identities=20% Similarity=0.251 Sum_probs=206.3
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhHHHHhcC------CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc
Q 019359 36 DYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (342)
Q Consensus 36 ~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~------~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~ 109 (342)
+.+.+.+..++| .|+++|.++++.+.++ .++++++|||+|||++++++++..+.. +.+++|++|+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 556667788999 9999999999988764 589999999999999999999888764 6679999999
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh---HHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 110 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
++|+.|+.+.+.++....++++..++|+...... ...+.. ..+|+|+|++.+.+ ...+..++++|+||+|+
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccch
Confidence 9999999999999888788999999998766543 233333 48999999987644 34567899999999998
Q ss_pred hhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHH
Q 019359 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKL 265 (342)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (342)
+.... ...+.......++++||||+.+.... ...+++.....+....... ..+. ...........+.+.
T Consensus 502 ~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r-~~i~---~~~~~~~~~~~l~~~ 570 (780)
T 1gm5_A 502 FGVKQ-----REALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGR-KEVQ---TMLVPMDRVNEVYEF 570 (780)
T ss_dssp C----------CCCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSC-CCCE---ECCCCSSTHHHHHHH
T ss_pred hhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCC-cceE---EEEeccchHHHHHHH
Confidence 63221 11222233468999999998664322 2334443322222211111 1111 111122234445555
Q ss_pred HHhhc-CCCcEEEEeCCch--------hHHHHHHHHHh---CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019359 266 LKEVM-DGSRILIFTETKK--------GCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (342)
Q Consensus 266 l~~~~-~~~~~lvf~~~~~--------~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 333 (342)
+.+.. .+++++|||++.+ .++.+++.|++ .++.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 55443 4789999999764 47788888988 478899999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 019359 334 RGLGRITVC 342 (342)
Q Consensus 334 ~Gidip~v~ 342 (342)
+|+|+|+++
T Consensus 651 ~GIDiP~v~ 659 (780)
T 1gm5_A 651 VGIDVPRAN 659 (780)
T ss_dssp SCSCCTTCC
T ss_pred ccccCCCCC
Confidence 999999975
No 46
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.9e-36 Score=276.26 Aligned_cols=275 Identities=15% Similarity=0.175 Sum_probs=201.5
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~ 128 (342)
.|+++|.++++.+.+++++++++|||+|||++++.++...+... +.++||++|+++|+.||.+.+++++...+
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 89999999999999999999999999999999988877766542 34899999999999999999999877767
Q ss_pred eEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccE
Q 019359 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
..+..++++...... .....+|+|+|++++... ....+..+++||+||||++.. ..+..++..+.+..++
T Consensus 186 ~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~ 255 (510)
T 2oca_A 186 AMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFK 255 (510)
T ss_dssp GGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEE
T ss_pred cceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEE
Confidence 788888887665543 345689999999976543 223456799999999999754 4577777878778899
Q ss_pred EEEEeecCchHHHHHH--HhcCCCeEEEeccccc-----ccccccceEEE---------------------EechhhHHH
Q 019359 209 LYWSATWPREVETLAR--QFLRNPYKVIIGSLEL-----KANQSINQVVE---------------------VVTEAEKYN 260 (342)
Q Consensus 209 i~~SaT~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---------------------~~~~~~~~~ 260 (342)
+++||||++....... .+++ +.......... ..+..+..... ......+..
T Consensus 256 l~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 256 FGLSGSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEESCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEeCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 9999999665322111 1222 21111111100 00000000000 001122334
Q ss_pred HHHHHHHhhcC--CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe-cccccCCC
Q 019359 261 RLIKLLKEVMD--GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAARGLG 337 (342)
Q Consensus 261 ~l~~~l~~~~~--~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t-~~~~~Gid 337 (342)
.+.+.+..... ++++||||+ .++++.+++.|.+.+.++..+||+++..+|..+++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 45555555433 344555555 899999999999988899999999999999999999999999999999 99999999
Q ss_pred CCCCC
Q 019359 338 RITVC 342 (342)
Q Consensus 338 ip~v~ 342 (342)
+|+++
T Consensus 414 ip~v~ 418 (510)
T 2oca_A 414 VKNLH 418 (510)
T ss_dssp CCSEE
T ss_pred cccCc
Confidence 99874
No 47
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=8.7e-35 Score=235.05 Aligned_cols=204 Identities=41% Similarity=0.683 Sum_probs=181.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc
Q 019359 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (342)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 107 (342)
.|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+..... ...+.++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 5899999999999999999999999999999999999999999999999999999999888764321 12367899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhh
Q 019359 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (342)
Q Consensus 108 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (342)
|+++|+.|+.+.++++... +.+..+.|+.........+..+++|+|+||+++.+.+......+..++++|+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999998654 67778888887776666666779999999999999988877778899999999999999
Q ss_pred cCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEe
Q 019359 188 DMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (342)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 235 (342)
+.++...+..+...+++..+++++|||++..+..+...++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 989999999999988889999999999999999999999998887654
No 48
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5e-35 Score=238.61 Aligned_cols=211 Identities=27% Similarity=0.493 Sum_probs=177.4
Q ss_pred ccCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCC
Q 019359 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (342)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~ 98 (342)
+...+.....|+++++++.+.+.+..+||..|+++|.++++.+.+++++++.+|||+|||++++++++..+....
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~----- 80 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----- 80 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT-----
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC-----
Confidence 344455566799999999999999999999999999999999999999999999999999999999988765432
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcC-CCcEEEeChHHHHHHHhccccCCCCcc
Q 019359 99 EGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVT 176 (342)
Q Consensus 99 ~~~~vlil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~ 176 (342)
.+.++||++|+++|+.||.+.++++.... ++.+..+.|+.........+.. .++|+|+||+++...+......+..++
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 160 (220)
T 1t6n_A 81 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 160 (220)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCC
Confidence 25689999999999999999999987765 7888888888776655554443 469999999999998888777788999
Q ss_pred EEEEeccchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEE
Q 019359 177 YLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVI 234 (342)
Q Consensus 177 ~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 234 (342)
++|+||||++.+ .++...+..+....+...|++++|||++...+.+...++.+|..+.
T Consensus 161 ~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 161 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999999876 4677788888888888899999999999999999999998887653
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.1e-36 Score=293.13 Aligned_cols=270 Identities=20% Similarity=0.280 Sum_probs=203.8
Q ss_pred HHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 019359 42 IAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (342)
Q Consensus 42 l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~ 121 (342)
+..+||. | ++|.++++.++.|+++++.+|||+|||+ +.++++..+... +.++||++|+++|+.|+.+.++
T Consensus 51 ~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 51 RKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHHH
T ss_pred HHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHHH
Confidence 3458998 9 9999999999999999999999999998 777777766542 6789999999999999999999
Q ss_pred HhcCCCCe----EEEEEecCCcchhh---HHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHH
Q 019359 122 KFGSRAGI----RSTCIYGGAPKGPQ---IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQ 194 (342)
Q Consensus 122 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~ 194 (342)
+++...++ .+..++|+.+.... ...+.. ++|+|+||++|.+++.. +..++++|+||||.+++ ++..
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~ 193 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKN 193 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--cccc
Confidence 99888788 88899998877653 334444 89999999999987765 56899999999999887 4677
Q ss_pred HHHHHhhc-----------CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHH
Q 019359 195 IRKIVTQI-----------RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLI 263 (342)
Q Consensus 195 ~~~~~~~~-----------~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 263 (342)
+..++..+ +...|.+++|||++.. ..+...++..+..+.+.... .....+...+. ...+...+.
T Consensus 194 ~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~ 268 (1054)
T 1gku_B 194 VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLS 268 (1054)
T ss_dssp HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTH
T ss_pred HHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHH
Confidence 77776665 3467899999998765 32222222222222121111 11112222222 244455566
Q ss_pred HHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEE----ecccccCCCCC
Q 019359 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA----TDVAARGLGRI 339 (342)
Q Consensus 264 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~----t~~~~~Gidip 339 (342)
+++... ++++||||+++++++.+++.|++. +++..+||++ ..+++.|++|+.+|||| |+++++|||+|
T Consensus 269 ~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip 340 (1054)
T 1gku_B 269 SILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLP 340 (1054)
T ss_dssp HHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCT
T ss_pred HHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccC
Confidence 666553 678999999999999999999988 8999999987 47788999999999999 89999999999
Q ss_pred CC
Q 019359 340 TV 341 (342)
Q Consensus 340 ~v 341 (342)
+|
T Consensus 341 ~V 342 (1054)
T 1gku_B 341 ER 342 (1054)
T ss_dssp TT
T ss_pred Cc
Confidence 95
No 50
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=244.41 Aligned_cols=213 Identities=27% Similarity=0.425 Sum_probs=182.0
Q ss_pred eeeccCCCcc---ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 16 TVEGHDVPRP---IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 16 ~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
.+.+...+.| ...|+++++++.+.+++..+||..|+++|.++++.++.+ +++++++|||+|||++|+++++.++.
T Consensus 78 ~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~ 157 (300)
T 3fmo_B 78 EVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (300)
T ss_dssp EEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhh
Confidence 3444444444 567999999999999999999999999999999999987 89999999999999999999999876
Q ss_pred cCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCC-CeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc-c
Q 019359 91 AQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-Q 168 (342)
Q Consensus 91 ~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~ 168 (342)
... .++++||++|+++|+.|+.+.++.++... ++.+....++....... ..+++|+|+||+++++++.. .
T Consensus 158 ~~~-----~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~ 229 (300)
T 3fmo_B 158 PAN-----KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLK 229 (300)
T ss_dssp TTS-----CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTC
T ss_pred ccC-----CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcC
Confidence 543 26689999999999999999999987654 67777777776543332 34679999999999999866 4
Q ss_pred ccCCCCccEEEEeccchhhc-CCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEec
Q 019359 169 HTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (342)
Q Consensus 169 ~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
...+..++++|+||||.+.+ .++...+..+...++..+|++++|||++..+..+...++.+|..+.+.
T Consensus 230 ~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 230 FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 55678999999999999987 678889999999999899999999999999999999999999887764
No 51
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=240.76 Aligned_cols=203 Identities=36% Similarity=0.557 Sum_probs=176.0
Q ss_pred ccccCC--CCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 28 IFQEAN--FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 28 ~~~~~~--~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
.|+.++ +++.+.+.+..+||..|+++|.++++.+..++++++++|||+|||++|+++++..+....... ..+.++||
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~-~~~~~~li 131 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP-RNGTGVLI 131 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCG-GGCCCEEE
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccc-cCCceEEE
Confidence 355555 899999999999999999999999999999999999999999999999999998876532211 12678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccc-cCCCCccEEEEeccc
Q 019359 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-TNLRRVTYLVLDEAD 184 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIvDE~h 184 (342)
++|+++|+.|+.+.+++++...+..+..+.|+.........+..+++|+|+||+++...+.... ..+..++++|+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 9999999999999999998888889999999888777777776779999999999998876643 567889999999999
Q ss_pred hhhcCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCe
Q 019359 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPY 231 (342)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 231 (342)
++.+.++...+..+...++...|++++|||+++.+..+...++..+.
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999998999999999999999999988877654
No 52
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.8e-34 Score=262.80 Aligned_cols=281 Identities=20% Similarity=0.256 Sum_probs=206.3
Q ss_pred HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+|+ .|++.|..+++.+..|+ +..++||+|||++|++|++..... +..++|++|+++||.|..+++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 5899 99999999999999998 899999999999999998854332 556999999999999999999999
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhcc------ccCCCCccEEEEeccchhh-cCC-----
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRML-DMG----- 190 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~-~~~----- 190 (342)
....++.+.++.|+.+...... ..+++|+|+||+.| .+++..+ ...+..+.++|+||||.++ +.+
T Consensus 148 ~~~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplI 225 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLI 225 (844)
T ss_dssp HHHTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEE
T ss_pred HhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchh
Confidence 8889999999999876543332 33589999999999 5555443 2456789999999999987 553
Q ss_pred ----------ChHHHHHHHhhcC---------CCccEE-----------------EEEeecCc---hHHHHH--HHhcC-
Q 019359 191 ----------FEPQIRKIVTQIR---------PDRQTL-----------------YWSATWPR---EVETLA--RQFLR- 228 (342)
Q Consensus 191 ----------~~~~~~~~~~~~~---------~~~~~i-----------------~~SaT~~~---~~~~~~--~~~~~- 228 (342)
+...+..+...++ +.+|++ ++|||.+. .+.... ..++.
T Consensus 226 isg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~ 305 (844)
T 1tf5_A 226 ISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQK 305 (844)
T ss_dssp EEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCB
T ss_pred hcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhc
Confidence 3456677777775 245665 67888542 222111 11111
Q ss_pred CCeEEE-------e-----------------------------cccc---------------------------------
Q 019359 229 NPYKVI-------I-----------------------------GSLE--------------------------------- 239 (342)
Q Consensus 229 ~~~~~~-------~-----------------------------~~~~--------------------------------- 239 (342)
+...+. + ....
T Consensus 306 d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~ 385 (844)
T 1tf5_A 306 DVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFR 385 (844)
T ss_dssp TTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred CCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHH
Confidence 110000 0 0000
Q ss_pred ---------cccccc---c-ceEEEEechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCC
Q 019359 240 ---------LKANQS---I-NQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGD 305 (342)
Q Consensus 240 ---------~~~~~~---~-~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 305 (342)
.+.+.. . ...+......++...+.+.+.+. ..+.++||||+|++.++.+++.|++.|+++..+||+
T Consensus 386 ~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~ 465 (844)
T 1tf5_A 386 NIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 465 (844)
T ss_dssp HHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSS
T ss_pred HHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC
Confidence 000000 0 01133456678888888888764 347789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 306 KNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 306 ~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
+.+.++..+.+.|+.| .|+|||+++++|+|||
T Consensus 466 ~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~ 497 (844)
T 1tf5_A 466 NHEREAQIIEEAGQKG--AVTIATNMAGRGTDIK 497 (844)
T ss_dssp CHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCC
T ss_pred ccHHHHHHHHHcCCCC--eEEEeCCccccCcCcc
Confidence 9877777666666554 6999999999999998
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.8e-34 Score=286.13 Aligned_cols=295 Identities=16% Similarity=0.159 Sum_probs=217.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHHHhc-CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 34 ~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~-~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
+.+...+.+...+|..++|.|.++++.+.. +++++++||||+|||+++.++++..+...+ +.+++|++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~------~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS------EGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT------TCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC------CCEEEEEcChHHH
Confidence 445566667777899999999999998875 578999999999999999999999887643 5689999999999
Q ss_pred HHHHHHHHH-HhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc--CCCCccEEEEeccchhhcC
Q 019359 113 AVQIQEEAL-KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--NLRRVTYLVLDEADRMLDM 189 (342)
Q Consensus 113 ~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~iIvDE~h~~~~~ 189 (342)
+.|..+.++ .|+...++++..+.|+....... ...++|+|+||+++..++.+... .++.++++|+||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 999998886 47777889999888876543221 22479999999999777655322 3678999999999987653
Q ss_pred CChHHHHHHHh-------hcCCCccEEEEEeecCchHHHHHHHhcCCC-eEEEecccccccccccceEEEEechh-----
Q 019359 190 GFEPQIRKIVT-------QIRPDRQTLYWSATWPREVETLARQFLRNP-YKVIIGSLELKANQSINQVVEVVTEA----- 256 (342)
Q Consensus 190 ~~~~~~~~~~~-------~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 256 (342)
.+..+..++. ..+++.|+|++|||++.. +.+..++...+ ....+.... .+......+...+..
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~--RPvpL~~~i~~~~~~~~~~~ 1137 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNV--RPVPLELHIQGFNISHTQTR 1137 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGG--CSSCEEEEEEEECCCSHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCC--CCCCeEEEEEeccCCCchhh
Confidence 5655554433 345678999999998764 34444443332 222222221 222222222222211
Q ss_pred --hHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC----------------------------------CCCcE
Q 019359 257 --EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD----------------------------------GWPAL 300 (342)
Q Consensus 257 --~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----------------------------------~~~~~ 300 (342)
.....+...+.+...++++||||++++.++.++..|... ...++
T Consensus 1138 ~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa 1217 (1724)
T 4f92_B 1138 LLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1217 (1724)
T ss_dssp HHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEE
T ss_pred hhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEE
Confidence 122334455666667889999999999999888766420 12378
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 301 SIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 301 ~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
.+|+++++.+|..+.+.|++|.++|||||+.++.|+|+|..
T Consensus 1218 ~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~ 1258 (1724)
T 4f92_B 1218 YLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAH 1258 (1724)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBS
T ss_pred EECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999975
No 54
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.5e-34 Score=286.27 Aligned_cols=299 Identities=19% Similarity=0.237 Sum_probs=213.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHHHh-cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCc---cCCCCceEEEEcCc
Q 019359 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL---VQGEGPIVLVLAPT 109 (342)
Q Consensus 34 ~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~-~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~---~~~~~~~vlil~p~ 109 (342)
+|++....+ .||..+++.|.++++.++ +++|++++||||+|||+++.++++..+...... ....+.++||++|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 555443333 278899999999999765 578999999999999999999999888653221 11236799999999
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhcccc--CCCCccEEEEeccchhh
Q 019359 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--NLRRVTYLVLDEADRML 187 (342)
Q Consensus 110 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~iIvDE~h~~~ 187 (342)
++|+.|..+.+++.....|+.+..++|+.+..... ..+++|+|+||+++..++.+... .++.++++|+||+|.+.
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 99999999999887777899999999987654321 23589999999998666554332 36789999999999775
Q ss_pred cCCChHHHHHHHh-------hcCCCccEEEEEeecCchHHHHHHHhcCCCe--EEEecccccccccccceEEEEech---
Q 019359 188 DMGFEPQIRKIVT-------QIRPDRQTLYWSATWPREVETLARQFLRNPY--KVIIGSLELKANQSINQVVEVVTE--- 255 (342)
Q Consensus 188 ~~~~~~~~~~~~~-------~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--- 255 (342)
+ ..+..+..++. ..+...|+|++|||++.. +.+..++-..+. ...+.... + +......+.....
T Consensus 221 d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~-R-PvpL~~~~~~~~~~~~ 296 (1724)
T 4f92_B 221 D-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSF-R-PVPLEQTYVGITEKKA 296 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGG-C-SSCEEEECCEECCCCH
T ss_pred C-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCC-c-cCccEEEEeccCCcch
Confidence 5 46666554433 346788999999998753 344443322211 11222111 1 1122221111111
Q ss_pred hhH----HHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhC------------------------------------
Q 019359 256 AEK----YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD------------------------------------ 295 (342)
Q Consensus 256 ~~~----~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~------------------------------------ 295 (342)
... ...+.+.+.+...++++||||++++.++.+++.|.+.
T Consensus 297 ~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (1724)
T 4f92_B 297 IKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDL 376 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHH
Confidence 111 1223334444445788999999999999888877531
Q ss_pred -CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 296 -GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 296 -~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
...++.+||+++..+|..+.+.|++|.++||+||+.++.|+|+|..
T Consensus 377 l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~ 423 (1724)
T 4f92_B 377 LPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAH 423 (1724)
T ss_dssp TTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBS
T ss_pred hhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCc
Confidence 1236789999999999999999999999999999999999999975
No 55
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=7.7e-35 Score=264.29 Aligned_cols=256 Identities=21% Similarity=0.210 Sum_probs=187.8
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~ 128 (342)
.|+++|.++++.+..++++++.+|||+|||++++.++... +.++||++|+++|+.||.+.+.+| +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 7999999999999999999999999999999988877654 456999999999999999999985 5
Q ss_pred eE-EEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCcc
Q 019359 129 IR-STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ 207 (342)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 207 (342)
+. +..++|+... ..+|+|+|++.+....... ...+++||+||||++.+..+.. +...+ ...+
T Consensus 158 ~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 66 7777776543 3689999999988765431 1358999999999998776654 34444 4678
Q ss_pred EEEEEeecCch-------------------HHHHHHHhcCCCeEEEe--cccccc-----------------------cc
Q 019359 208 TLYWSATWPRE-------------------VETLARQFLRNPYKVII--GSLELK-----------------------AN 243 (342)
Q Consensus 208 ~i~~SaT~~~~-------------------~~~~~~~~~~~~~~~~~--~~~~~~-----------------------~~ 243 (342)
++++||||.+. ...+...++..+....+ ...... ..
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 99999998632 11221111111111101 000000 00
Q ss_pred cccceEEE---------------------EechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEee
Q 019359 244 QSINQVVE---------------------VVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSI 302 (342)
Q Consensus 244 ~~~~~~~~---------------------~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 302 (342)
..+...+. ......+...+.+++.. ..++++||||++.++++.+++.|. +..+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~ 374 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAI 374 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBC
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----ccee
Confidence 00000000 01123456677777776 367899999999999999999984 6678
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 303 HGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~ 414 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDAN 414 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBS
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCc
Confidence 9999999999999999999999999999999999999874
No 56
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.4e-32 Score=250.16 Aligned_cols=282 Identities=22% Similarity=0.246 Sum_probs=191.0
Q ss_pred HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+|. .|++.|..++..+..|+ +..++||+|||++|++|++..... +..++|++||++|+.|..+++..+
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHH
Confidence 3676 99999999999999888 899999999999999998865433 556999999999999999999999
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhccc------cCCCCccEEEEeccchhh-cCC-----
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRML-DMG----- 190 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~-~~~----- 190 (342)
....++.+..+.|+.+... +....+++|+|+||+.+ .+++..+. ..+..+.++|+||||.++ +.+
T Consensus 139 ~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 9889999999999876532 33333689999999999 67766542 456789999999999988 432
Q ss_pred ----------ChHHHHHHHhhcCC--------------------CccEE------------------------EEEeecC
Q 019359 191 ----------FEPQIRKIVTQIRP--------------------DRQTL------------------------YWSATWP 216 (342)
Q Consensus 191 ----------~~~~~~~~~~~~~~--------------------~~~~i------------------------~~SaT~~ 216 (342)
+...+..++..++. .++++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 33445555555542 33432 6788753
Q ss_pred c---hHHHHH--HHhcC---------------------------------CC----eEEEecccccc-------------
Q 019359 217 R---EVETLA--RQFLR---------------------------------NP----YKVIIGSLELK------------- 241 (342)
Q Consensus 217 ~---~~~~~~--~~~~~---------------------------------~~----~~~~~~~~~~~------------- 241 (342)
. .+.... ..++. .+ ..+.+......
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 2 111000 00000 00 00111000000
Q ss_pred -----------------------------cc----cccceEEEEechhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHH
Q 019359 242 -----------------------------AN----QSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQ 287 (342)
Q Consensus 242 -----------------------------~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~ 287 (342)
.+ ..-...+.......|...+.+.+.... .+.++||||+|++.++.
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 00 000112344567788889988887653 47789999999999999
Q ss_pred HHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 288 VTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 288 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
+++.|++.|+++..+||+..+.++..+.+.|+.| .|+|||+++++|+||+.
T Consensus 457 Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l 507 (853)
T 2fsf_A 457 VSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVL 507 (853)
T ss_dssp HHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCT
T ss_pred HHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccC
Confidence 9999999999999999999888888888888887 59999999999999985
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=8.3e-32 Score=248.69 Aligned_cols=283 Identities=20% Similarity=0.254 Sum_probs=210.9
Q ss_pred HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+|+ .|++.|..+++.+..|+ +..++||+|||++|++|++..... +..++|++|++.|+.|..+++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4788 99999999999998887 999999999999999998654433 456999999999999999999999
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhcc------ccCCCCccEEEEeccchhh-cC------
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRML-DM------ 189 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~-~~------ 189 (342)
...+|+.+.++.|+.+...... ..+++|+|+||+.| .+++..+ ...+..+.++|+||||.++ +.
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 9999999999999876543322 23589999999999 6666654 3456789999999999987 32
Q ss_pred ---------CChHHHHHHHhhcC---------CCccEE-----------------EEEeecCch---HHHHH--HHhcCC
Q 019359 190 ---------GFEPQIRKIVTQIR---------PDRQTL-----------------YWSATWPRE---VETLA--RQFLRN 229 (342)
Q Consensus 190 ---------~~~~~~~~~~~~~~---------~~~~~i-----------------~~SaT~~~~---~~~~~--~~~~~~ 229 (342)
++...+..+...++ +.++++ ++|||.+.. +.... ..++..
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 24567777888886 566777 778886542 22111 111111
Q ss_pred C--------eEEEecc-----------------------------ccc--------------------------------
Q 019359 230 P--------YKVIIGS-----------------------------LEL-------------------------------- 240 (342)
Q Consensus 230 ~--------~~~~~~~-----------------------------~~~-------------------------------- 240 (342)
. ..+.+.. ...
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 1 0000000 000
Q ss_pred ----------cccc---cc-ceEEEEechhhHHHHHHHHHHhh-cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCC
Q 019359 241 ----------KANQ---SI-NQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGD 305 (342)
Q Consensus 241 ----------~~~~---~~-~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 305 (342)
+.+. .. ...+.......+...+.+.+.+. ..+.++||||+|++.++.+++.|++.|+++..+||+
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 0000 00 01233456677888888888764 347789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 306 KNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 306 ~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
..+.++..+.+.|+.| .|+|||+++++|+||+.+
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 527 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLG 527 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTT
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCC
Confidence 8877777777788777 699999999999999864
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.5e-33 Score=256.90 Aligned_cols=279 Identities=18% Similarity=0.173 Sum_probs=162.9
Q ss_pred CCcHHHHhhHHHHhc----C-CCEEEEcCCCCchhhHhHHHHHHhhhcC-CCccCCCCceEEEEcCcHHHHHHHH-HHHH
Q 019359 49 EPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLSYLLPAFVHVSAQ-PRLVQGEGPIVLVLAPTRELAVQIQ-EEAL 121 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~----~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~~~~~vlil~p~~~l~~q~~-~~~~ 121 (342)
.|+++|.++++.+.. + +++++++|||+|||++++..+...+... .......+.++||++|+++|+.||. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999998765 4 5689999999999998655444433321 0111113678999999999999999 7777
Q ss_pred HhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhc----cccCCCCccEEEEeccchhhcCCChHHHHH
Q 019359 122 KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA----QHTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (342)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~----~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (342)
.|+. .+..+.++. ...+.+|+|+|++++...... .......+++||+||||++.... ...+..
T Consensus 258 ~~~~----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFGD----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcch----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 7643 233333221 223579999999999876542 22345679999999999986542 245566
Q ss_pred HHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEeccccccc----ccc--------------------------cc
Q 019359 198 IVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKA----NQS--------------------------IN 247 (342)
Q Consensus 198 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------------------------~~ 247 (342)
++..++ ..+++++||||..........+++.+............ +.. ..
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 666665 57899999998755443334444443322111000000 000 00
Q ss_pred eEEEEech-------hhHHHH----HHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCC--------CcEeecCCCCH
Q 019359 248 QVVEVVTE-------AEKYNR----LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGW--------PALSIHGDKNQ 308 (342)
Q Consensus 248 ~~~~~~~~-------~~~~~~----l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~--------~~~~~~~~~~~ 308 (342)
........ ..+... +.+.+.....++++||||+++++|+.+++.|.+.+. .+..+||++++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 00000000 111222 333344443468999999999999999999986543 26678888764
Q ss_pred HHHHHHHHHHhcCCCC---EEEEecccccCCCCCCCC
Q 019359 309 SERDWVLAEFRSGRSP---IMTATDVAARGLGRITVC 342 (342)
Q Consensus 309 ~~r~~~~~~f~~~~~~---vlv~t~~~~~Gidip~v~ 342 (342)
+|..+++.|++|+.+ ||++|+++++|+|+|+++
T Consensus 484 -~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~ 519 (590)
T 3h1t_A 484 -IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCK 519 (590)
T ss_dssp -HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEE
T ss_pred -HHHHHHHHHhCCCCCCCEEEEECChhhcCccchhee
Confidence 699999999998765 888889999999999874
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=5.5e-32 Score=242.84 Aligned_cols=250 Identities=17% Similarity=0.118 Sum_probs=174.9
Q ss_pred CCCCCcHHHHhhHHHHhcCCCE-EEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 46 GFVEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 46 ~~~~l~~~Q~~~~~~~~~~~~~-l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
|+.+++|.|. +++.++++++. ++.+|||+|||++++++++..+... +.+++|++|+++|+.|+.+.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRGL- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcCc-
Confidence 6778899875 68888888776 9999999999999899888776542 678999999999999999887532
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHh-hcC
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVT-QIR 203 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~-~~~ 203 (342)
.+......... ....+..+.++|++.+.+.+... ..+..++++|+||||.+ +..+......+.. ...
T Consensus 72 -----~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 72 -----PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp -----CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred -----eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 22111111100 11224578899999988776544 34678999999999976 2222222222222 234
Q ss_pred CCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCch
Q 019359 204 PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKK 283 (342)
Q Consensus 204 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~ 283 (342)
++.++++||||++...... +...+......... + .... ..+.+.+.+ .++++||||++++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~-p-~~~~-------------~~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI-P-ERSW-------------NTGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC-C-SSCC-------------SSSCHHHHH--CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCccC-C-chhh-------------HHHHHHHHh--CCCCEEEEcCCHH
Confidence 5789999999997643221 22233222221110 0 0000 011222333 3678999999999
Q ss_pred hHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 284 GCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 284 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
+++.+++.|++.++.+..+|+++. ..+++.|++|+.+|||||+++++|+|+|+
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~ 252 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA 252 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC
Confidence 999999999999999999999764 67899999999999999999999999996
No 60
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.97 E-value=1.1e-30 Score=247.18 Aligned_cols=298 Identities=16% Similarity=0.244 Sum_probs=202.0
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHh-cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCce
Q 019359 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (342)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~-~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
.+...|+.+++++.+.+.+...+ ..|.+.|++.+..+. .++++++.||||+|||+. ++++....... .+.+.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~---~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMP---HLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCG---GGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccc---cCCCce
Confidence 45677999999999999999988 578888888877655 567899999999999983 33332111110 012567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhc-CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEe
Q 019359 103 VLVLAPTRELAVQIQEEALKFG-SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLD 181 (342)
Q Consensus 103 vlil~p~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvD 181 (342)
+++++|+++++.|+.+.+.... ...+..+..-..... ......+|+++|++.+.+.+... ..+..+++||+|
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 9999999999999988765532 222222211111000 11235789999999999876654 347889999999
Q ss_pred ccch-hhcCC-ChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHH
Q 019359 182 EADR-MLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY 259 (342)
Q Consensus 182 E~h~-~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (342)
|+|. .++.. ....+..+... .++.+++++|||++.. .+ ..++.....+.+.... ..+...+......+..
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT----YPVELYYTPEFQRDYL 287 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC----CCEEEECCSSCCSCHH
T ss_pred CccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HH-HHHhcCCCcccccCcc----cceEEEEecCCchhHH
Confidence 9995 44322 12233334333 3578999999998642 33 3455544433332221 1122222222222333
Q ss_pred HHHHHHHHhh---cCCCcEEEEeCCchhHHHHHHHHHh-----------CCCCcEeecCCCCHHHHHHHHHHHh-----c
Q 019359 260 NRLIKLLKEV---MDGSRILIFTETKKGCDQVTRQLRM-----------DGWPALSIHGDKNQSERDWVLAEFR-----S 320 (342)
Q Consensus 260 ~~l~~~l~~~---~~~~~~lvf~~~~~~~~~l~~~L~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~ 320 (342)
......+.+. ..++++||||+++++++.+++.|.+ .++.+..+||+++..+|..+++.|. +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 3333222221 2478999999999999999999985 5778999999999999999999999 9
Q ss_pred CCCCEEEEecccccCCCCCCCC
Q 019359 321 GRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 321 ~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|+.+|||||+++++|||+|+|+
T Consensus 368 g~~kVlVAT~iae~GidIp~v~ 389 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIV 389 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEE
T ss_pred CceEEEEeCcHHHhCcCcCCeE
Confidence 9999999999999999999874
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=2e-31 Score=246.18 Aligned_cols=250 Identities=18% Similarity=0.137 Sum_probs=180.2
Q ss_pred CCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC
Q 019359 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (342)
Q Consensus 47 ~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~ 126 (342)
...+.|.|+.+++.+.+++++++.+|||+|||++|+++++..+... +.++||++|+++|+.|+.+.++.+
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~PtreLa~Qi~~~l~~~--- 238 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRVVAAEMEEALRGL--- 238 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS---
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHHHHHHHHHHhcCC---
Confidence 3677888888888899999999999999999999999998877652 668999999999999999887632
Q ss_pred CCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcC-CC
Q 019359 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR-PD 205 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-~~ 205 (342)
.+. ....... .....+..+.++|.+.+.+.+... ..+..++++|+||||.+ +.++...+..+...++ +.
T Consensus 239 ---~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~ 308 (618)
T 2whx_A 239 ---PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGE 308 (618)
T ss_dssp ---CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTS
T ss_pred ---cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccC
Confidence 222 2221100 001113456678888777655543 34678999999999997 4445556666666654 57
Q ss_pred ccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhH
Q 019359 206 RQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGC 285 (342)
Q Consensus 206 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~ 285 (342)
.|+++||||++.....+.. .++..+.+.... +. .....+...+.+ .++++||||++++++
T Consensus 309 ~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~-~~~~~ll~~l~~--~~~~~LVF~~s~~~a 368 (618)
T 2whx_A 309 AAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PE-RSWNTGFDWITD--YQGKTVWFVPSIKAG 368 (618)
T ss_dssp CEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CS-SCCSSSCHHHHH--CCSCEEEECSSHHHH
T ss_pred ccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CH-HHHHHHHHHHHh--CCCCEEEEECChhHH
Confidence 8999999999765432211 122222221110 00 001122233333 367899999999999
Q ss_pred HHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Q 019359 286 DQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 341 (342)
Q Consensus 286 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v 341 (342)
+.+++.|++.++++..+||+ +|..+++.|++|+.+|||||+++++|+|+| +
T Consensus 369 ~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v 419 (618)
T 2whx_A 369 NDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-A 419 (618)
T ss_dssp HHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-C
T ss_pred HHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-c
Confidence 99999999999999999984 678899999999999999999999999997 5
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=1.1e-30 Score=232.98 Aligned_cols=233 Identities=17% Similarity=0.138 Sum_probs=157.8
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
+++++++++|||+|||++|+++++..+... +.+++|++|+++|+.|+.+.++ ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 468999999999999999988888665542 6689999999999999887775 2333333332111
Q ss_pred hHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhh-cCCCccEEEEEeecCchHHH
Q 019359 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ-IRPDRQTLYWSATWPREVET 221 (342)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SaT~~~~~~~ 221 (342)
....+..+.+.|.+.+.+.+.. ...+..++++|+||+|.+ ...+......+... .+...++++||||+++....
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 0111244666788877665555 344678999999999986 22222233333333 24678999999999864221
Q ss_pred HHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEe
Q 019359 222 LARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALS 301 (342)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~ 301 (342)
+... ..+.. .... .........+.+.+.+ .++++||||+++++++.+++.|++.++++..
T Consensus 141 ~~~~--~~~i~-~~~~---------------~~~~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPPS--NSPII-DEET---------------RIPDKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCCC--SSCCE-EEEC---------------CCCSSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCC--CCcee-eccc---------------cCCHHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 1100 01111 0000 0001111122333433 2678999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 302 IHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 302 ~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
+||+ +|..+++.|++|+.+|||||+++++|+|+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip 234 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK 234 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC
Confidence 9997 478899999999999999999999999999
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=1e-30 Score=239.57 Aligned_cols=240 Identities=20% Similarity=0.162 Sum_probs=172.8
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~ 128 (342)
.++++|..++..+..++++++.+|||+|||.++.++++.. +.++||++|+++|+.|+.+.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 5667788888888888999999999999999888777653 5579999999999999998776642 3
Q ss_pred eEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCcc-
Q 019359 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ- 207 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~- 207 (342)
..+....|+.. ...+.+|+|+||++|+ ......+..++++|+||||. .+.++...+..+.+.++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCc
Confidence 33444455433 2345899999999973 45556677899999999985 444566677778887776665
Q ss_pred -EEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHH
Q 019359 208 -TLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCD 286 (342)
Q Consensus 208 -~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~ 286 (342)
++++|||++.... ...+....+.... ............ .+...++++||||++++.++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~~-------~~~i~~~~~~~~--------l~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALSN-------TGEIPFYGKAIP--------IEAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECBS-------CSSEEETTEEEC--------GGGSSSSEEEEECSCHHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeecc-------cchhHHHHhhhh--------hhhccCCcEEEEeCCHHHHH
Confidence 7788999876321 1111111111000 000000000000 11225789999999999999
Q ss_pred HHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 287 QVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 287 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.+++.|++.++++..+||++++.+ |.++..+|||||+++++|||+| |+
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 999999999999999999999764 4556679999999999999987 63
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=4.9e-30 Score=248.77 Aligned_cols=284 Identities=16% Similarity=0.081 Sum_probs=188.8
Q ss_pred CCCcHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 48 VEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
..|+|||.+++..+... .++++.++||+|||.+++..+...+... ...++||+||+ .|+.||..++.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 37999999999887764 5789999999999999777665555432 14579999999 99999999996542
Q ss_pred CCCeEEEEEecCCcchhhHH--hhcCCCcEEEeChHHHHHHHhc-cccCCCCccEEEEeccchhhcCCCh--HHHHHHHh
Q 019359 126 RAGIRSTCIYGGAPKGPQIR--DLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYLVLDEADRMLDMGFE--PQIRKIVT 200 (342)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIvDE~h~~~~~~~~--~~~~~~~~ 200 (342)
++.+..+.++........ ......+|+|+|++.+.+.... .......+++||+||||++.+.... ..+..+..
T Consensus 224 --~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~ 301 (968)
T 3dmq_A 224 --NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQ 301 (968)
T ss_dssp --CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHH
T ss_pred --CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHH
Confidence 455555554332211110 1123478999999988642111 1122346899999999998765422 22333333
Q ss_pred hcCCCccEEEEEeecCc----hHHHHHHHhcCCC----------------------------------------------
Q 019359 201 QIRPDRQTLYWSATWPR----EVETLARQFLRNP---------------------------------------------- 230 (342)
Q Consensus 201 ~~~~~~~~i~~SaT~~~----~~~~~~~~~~~~~---------------------------------------------- 230 (342)
......+++++||||.. ++..+........
T Consensus 302 L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 302 LAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp HHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred HhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 33345679999999842 1111111000000
Q ss_pred ----------------------------------eEEEecccccccc-cccceEE-------------------------
Q 019359 231 ----------------------------------YKVIIGSLELKAN-QSINQVV------------------------- 250 (342)
Q Consensus 231 ----------------------------------~~~~~~~~~~~~~-~~~~~~~------------------------- 250 (342)
..+.......... ......+
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 0000000000000 0000000
Q ss_pred ---------------------EEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHh-CCCCcEeecCCCCH
Q 019359 251 ---------------------EVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM-DGWPALSIHGDKNQ 308 (342)
Q Consensus 251 ---------------------~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~ 308 (342)
.......+...+.+++.. ..++++||||+++++++.+++.|.+ .|+++..+||+++.
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~ 540 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI 540 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 011233567777777776 3678999999999999999999995 59999999999999
Q ss_pred HHHHHHHHHHhcCC--CCEEEEecccccCCCCCCCC
Q 019359 309 SERDWVLAEFRSGR--SPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 309 ~~r~~~~~~f~~~~--~~vlv~t~~~~~Gidip~v~ 342 (342)
.+|..+++.|++|+ ++|||||+++++|+|+|+++
T Consensus 541 ~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~ 576 (968)
T 3dmq_A 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFAS 576 (968)
T ss_dssp THHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCC
T ss_pred HHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCc
Confidence 99999999999998 99999999999999999874
No 65
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=2.3e-29 Score=229.94 Aligned_cols=273 Identities=19% Similarity=0.249 Sum_probs=183.5
Q ss_pred CCcHHHHhhHHHH----hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMA----LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~----~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|+|+|.+++..+ ..++++++.++||+|||++++..+....... ...++||+|| ..|+.||.++++++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~------~~~~~LIv~P-~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN------ELTPSLVICP-LSVLKNWEEELSKFA 109 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT------CCSSEEEEEC-STTHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC------CCCCEEEEcc-HHHHHHHHHHHHHHC
Confidence 7999999998876 3578899999999999998655444333221 2467999999 568899999999987
Q ss_pred CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCC
Q 019359 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (342)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (342)
+. ..+..++|+... .....++|+|+|++++.+... .....+++||+||||++.+.. ......+..++
T Consensus 110 ~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~- 176 (500)
T 1z63_A 110 PH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK- 176 (500)
T ss_dssp TT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-
T ss_pred CC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-
Confidence 53 455556665432 112347899999999865433 222458999999999987653 22333444443
Q ss_pred CccEEEEEeecCch-HHHHH------------------------------------HHhcCCCeEEEecccc----cccc
Q 019359 205 DRQTLYWSATWPRE-VETLA------------------------------------RQFLRNPYKVIIGSLE----LKAN 243 (342)
Q Consensus 205 ~~~~i~~SaT~~~~-~~~~~------------------------------------~~~~~~~~~~~~~~~~----~~~~ 243 (342)
..+.+++||||... ...+. ...+ .+......... ...+
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSC
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCC
Confidence 56789999998431 11111 0111 11111111000 0001
Q ss_pred cccceEEEEe--------------------------------------------------------chhhHHHHHHHHHH
Q 019359 244 QSINQVVEVV--------------------------------------------------------TEAEKYNRLIKLLK 267 (342)
Q Consensus 244 ~~~~~~~~~~--------------------------------------------------------~~~~~~~~l~~~l~ 267 (342)
......+... ....+...+.+.+.
T Consensus 256 ~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~ 335 (500)
T 1z63_A 256 DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIE 335 (500)
T ss_dssp SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHH
Confidence 1111111100 11234455556666
Q ss_pred hhc-CCCcEEEEeCCchhHHHHHHHHHhC-CCCcEeecCCCCHHHHHHHHHHHhcC-CCC-EEEEecccccCCCCCCCC
Q 019359 268 EVM-DGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSG-RSP-IMTATDVAARGLGRITVC 342 (342)
Q Consensus 268 ~~~-~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vlv~t~~~~~Gidip~v~ 342 (342)
+.. .++++||||++...++.+.+.|.+. |+.+..+||+++..+|..+++.|++| +.+ +|++|+++++|+|+|+++
T Consensus 336 ~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 336 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 653 4789999999999999999999885 89999999999999999999999988 455 789999999999999864
No 66
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=5.6e-32 Score=241.72 Aligned_cols=229 Identities=17% Similarity=0.180 Sum_probs=147.2
Q ss_pred HHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCc
Q 019359 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAP 139 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~ 139 (342)
.+.+++++++++|||+|||++|+++++..+... +.+++|++|+++|+.|+.+.++.+ ++. +..+.-
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~----~v~---~~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL----DVK---FHTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS----CEE---EESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcC----CeE---Eecccc
Confidence 356789999999999999999989888876653 568999999999999999888754 222 111110
Q ss_pred chhhHHhhcCCCcEEEeChHH---------HHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhc-CCCccEE
Q 019359 140 KGPQIRDLRRGVEIVIATPGR---------LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTL 209 (342)
Q Consensus 140 ~~~~~~~~~~~~~iiv~T~~~---------l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i 209 (342)
. .++||+. +...+.. ...+..++++|+||+|.+ +.++...+..+.... ....+++
T Consensus 70 ~-------------~v~Tp~~l~~~l~~~~l~~~~~~-~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l 134 (440)
T 1yks_A 70 S-------------AHGSGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATI 134 (440)
T ss_dssp C-------------CCCCSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred e-------------eccCCccceeeecccchhHhhhC-cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEE
Confidence 0 1444433 3322222 234678999999999997 222222222222222 3578999
Q ss_pred EEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHH
Q 019359 210 YWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVT 289 (342)
Q Consensus 210 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~ 289 (342)
+||||++.....+... ..+...... ...... ...+...+.+ .++++||||++++.++.++
T Consensus 135 ~~SAT~~~~~~~~~~~--~~~~~~~~~---------------~~~~~~-~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 135 LMTATPPGTSDEFPHS--NGEIEDVQT---------------DIPSEP-WNTGHDWILA--DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEEC---------------CCCSSC-CSSSCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEeCCCCchhhhhhhc--CCCeeEeee---------------ccChHH-HHHHHHHHHh--cCCCEEEEeCCHHHHHHHH
Confidence 9999997653322110 011110000 000000 1111222333 3689999999999999999
Q ss_pred HHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 290 RQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 290 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+.|++.++++..+||+ +|..+++.|++|+.+|||||+++++|+|+| ++
T Consensus 195 ~~L~~~~~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~ 242 (440)
T 1yks_A 195 ASLRKAGKSVVVLNRK----TFEREYPTIKQKKPDFILATDIAEMGANLC-VE 242 (440)
T ss_dssp HHHHHTTCCEEECCSS----SCC--------CCCSEEEESSSTTCCTTCC-CS
T ss_pred HHHHHcCCCEEEecch----hHHHHHhhhcCCCceEEEECChhheeeccC-ce
Confidence 9999999999999993 578999999999999999999999999999 63
No 67
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=4.9e-31 Score=245.09 Aligned_cols=255 Identities=16% Similarity=0.200 Sum_probs=170.2
Q ss_pred HHHcCCC-----CCcHHHH-----hhHHHHh------cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEE
Q 019359 42 IAKLGFV-----EPTPIQA-----QGWPMAL------KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (342)
Q Consensus 42 l~~~~~~-----~l~~~Q~-----~~~~~~~------~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vli 105 (342)
+...||. .+++.|+ .+++.++ +++++++++|||+|||++|+++++..+... +.+++|
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEE
Confidence 3445666 8899999 8888777 899999999999999999999888876552 678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEEEEeccc
Q 019359 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (342)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (342)
++|+++|+.|+.+.++.+ ++.. ..+. ...... +.-+-+.+.+.+.+.+... ..+..++++|+||+|
T Consensus 276 laPTr~La~Q~~~~l~~~----~i~~---~~~~-----l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL----PVRY---LTPA-----VQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAH 342 (673)
T ss_dssp EESSHHHHHHHHHHTTTS----CCEE---CCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTT
T ss_pred EccHHHHHHHHHHHHhcC----Ceee---eccc-----ccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCc
Confidence 999999999999888765 2211 0000 000001 1223344555555444443 456789999999999
Q ss_pred hhhcCCChHHHHHHHhhc-CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHH
Q 019359 185 RMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLI 263 (342)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 263 (342)
.+ +..+......+.... ....++++||||++..+..+... ..+....... .... ....+.
T Consensus 343 ~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~~---------------~~~~-~~~~~l 403 (673)
T 2wv9_A 343 FT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSSE---------------IPDR-AWSSGF 403 (673)
T ss_dssp CC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC---------------CCSS-CCSSCC
T ss_pred cc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEeee---------------cCHH-HHHHHH
Confidence 87 111112222233333 25789999999997653221110 0111100000 0000 011122
Q ss_pred HHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 264 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
..+.+ .++++||||+++++++.+++.|++.++++..+||+ +|..+++.|++|+.+|||||+++++|||+| ++
T Consensus 404 ~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~ 475 (673)
T 2wv9_A 404 EWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-AS 475 (673)
T ss_dssp HHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CS
T ss_pred HHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-Cc
Confidence 22323 47899999999999999999999999999999994 789999999999999999999999999999 63
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=3.5e-29 Score=241.27 Aligned_cols=276 Identities=12% Similarity=0.109 Sum_probs=178.8
Q ss_pred CCcHHHHhhHHHHhc--------------CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHH
Q 019359 49 EPTPIQAQGWPMALK--------------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~--------------~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~ 114 (342)
.||++|.++++.+.. +++++++++||||||+++ ++++..+.... ...++|||||+++|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~-----~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD-----FIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT-----TCCEEEEEECGGGCCH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC-----CCceEEEEeCcHHHHH
Confidence 599999999998764 368999999999999986 44444443221 2468999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhc-CCCcEEEeChHHHHHHHhccc--cCCCCccEEEEeccchhhcCCC
Q 019359 115 QIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQH--TNLRRVTYLVLDEADRMLDMGF 191 (342)
Q Consensus 115 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~iIvDE~h~~~~~~~ 191 (342)
||.+.+..|.... +.++.+.......+. .+.+|+|+|++++...+.... ..+..+++||+||||++..
T Consensus 345 Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--- 415 (1038)
T 2w00_A 345 QTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--- 415 (1038)
T ss_dssp HHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---
T ss_pred HHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---
Confidence 9999999986531 223333333333442 468999999999998765432 2345789999999999753
Q ss_pred hHHHHHHHhhcCCCccEEEEEeecCchHH----HHHHHhcCC-----------------CeEEEecccccc--c-----c
Q 019359 192 EPQIRKIVTQIRPDRQTLYWSATWPREVE----TLARQFLRN-----------------PYKVIIGSLELK--A-----N 243 (342)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~--~-----~ 243 (342)
...+..+...++ +.+.+++||||..... .....+++. |..+........ . .
T Consensus 416 ~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 416 GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCC
T ss_pred hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccccc
Confidence 234556666665 5799999999864321 111122222 222211110000 0 0
Q ss_pred ----cccceEEEEechhhHHHHHHHHHHh----hc-------CCCcEEEEeCCchhHHHHHHHHHhCC------------
Q 019359 244 ----QSINQVVEVVTEAEKYNRLIKLLKE----VM-------DGSRILIFTETKKGCDQVTRQLRMDG------------ 296 (342)
Q Consensus 244 ----~~~~~~~~~~~~~~~~~~l~~~l~~----~~-------~~~~~lvf~~~~~~~~~l~~~L~~~~------------ 296 (342)
...... .......+...++..+.+ .. .+.++||||+++++|..+++.|++.+
T Consensus 495 ~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 495 EKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp HHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 000000 000122233333333322 11 24589999999999999999997643
Q ss_pred CCcE-eecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCCEE
Q 019359 297 WPAL-SIHGD----------K----------NQ-----------------------------SERDWVLAEFRSGRSPIM 326 (342)
Q Consensus 297 ~~~~-~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~vl 326 (342)
+++. ++|++ + ++ ..|..++++|++|+++||
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~IL 653 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLL 653 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 4553 45542 1 21 137889999999999999
Q ss_pred EEecccccCCCCCCC
Q 019359 327 TATDVAARGLGRITV 341 (342)
Q Consensus 327 v~t~~~~~Gidip~v 341 (342)
|+|+++.+|+|+|.|
T Consensus 654 Ivvd~lltGfDiP~l 668 (1038)
T 2w00_A 654 IVVGMFLTGFDAPTL 668 (1038)
T ss_dssp EESSTTSSSCCCTTE
T ss_pred EEcchHHhCcCcccc
Confidence 999999999999986
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=4.2e-30 Score=230.98 Aligned_cols=234 Identities=16% Similarity=0.180 Sum_probs=155.9
Q ss_pred HHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 019359 59 PMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGA 138 (342)
Q Consensus 59 ~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 138 (342)
..+.+++++++.+|||+|||++|+++++..+... +.++||++|+++|+.|+.+.++.+ .+....+..
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~ 82 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSAV 82 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTTS------CEEECC---
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcCc------eEeEEeccc
Confidence 3456788999999999999999999998877642 678999999999999999888632 221111110
Q ss_pred cchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh-----hcCCChHHHHHHHhhcCCCccEEEEEe
Q 019359 139 PKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM-----LDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (342)
Q Consensus 139 ~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~-----~~~~~~~~~~~~~~~~~~~~~~i~~Sa 213 (342)
.. ....+..+.++|.+.+.+.+... ..+..+++||+||||.. ...++... . ...+..++++|||
T Consensus 83 ~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~---~--~~~~~~~~il~SA 151 (459)
T 2z83_A 83 QR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT---K--VELGEAAAIFMTA 151 (459)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH---H--HHTTSCEEEEECS
T ss_pred cc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH---H--hccCCccEEEEEc
Confidence 00 01122456778888777665543 34678999999999973 22211111 1 1235789999999
Q ss_pred ecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHH
Q 019359 214 TWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLR 293 (342)
Q Consensus 214 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~ 293 (342)
|++.....+... ..|........ + ......+...+.+ .++++||||+++++++.+++.|+
T Consensus 152 T~~~~~~~~~~~--~~pi~~~~~~~---------------~-~~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L~ 211 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHDLQDEI---------------P-DRAWSSGYEWITE--YAGKTVWFVASVKMGNEIAMCLQ 211 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEEEECCC---------------C-SSCCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEEecccC---------------C-cchhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHHHH
Confidence 998653221110 12222111000 0 0000011222333 26889999999999999999999
Q ss_pred hCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCC
Q 019359 294 MDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 340 (342)
Q Consensus 294 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~ 340 (342)
+.++++..+|++ +|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 212 ~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~ 254 (459)
T 2z83_A 212 RAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA 254 (459)
T ss_dssp HTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC
T ss_pred hcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC
Confidence 999999999995 5678899999999999999999999999997
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-27 Score=228.44 Aligned_cols=321 Identities=16% Similarity=0.215 Sum_probs=205.4
Q ss_pred hHHHHHhhhhcceeeec---cCCCccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHh----cCCCEEEEcCCCC
Q 019359 3 ETEVKMYRARREITVEG---HDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMAL----KGRDLIGIAETGS 75 (342)
Q Consensus 3 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~----~~~~~l~~~~tG~ 75 (342)
++.+..+..+....... ...+.....|+.+...+... .-..|+|||.+++..+. .++++++..+||+
T Consensus 193 ~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGl 266 (800)
T 3mwy_W 193 PEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAFLWSKGDNGILADEMGL 266 (800)
T ss_dssp HHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTS
T ss_pred HHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCc
Confidence 34566665554332211 12223333466554433211 12389999999998665 6889999999999
Q ss_pred chhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHh---------
Q 019359 76 GKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD--------- 146 (342)
Q Consensus 76 GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 146 (342)
|||+.++..+...+.... ....+||||| ..++.||.+++.++++ ++.+..++|+.........
T Consensus 267 GKT~~ai~~i~~l~~~~~-----~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 338 (800)
T 3mwy_W 267 GKTVQTVAFISWLIFARR-----QNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRA 338 (800)
T ss_dssp STTHHHHHHHHHHHHHHS-----CCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC--
T ss_pred chHHHHHHHHHHHHHhcC-----CCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccc
Confidence 999886655443332221 1456899999 6788999999999865 4667777776654443322
Q ss_pred ---hcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecC----chH
Q 019359 147 ---LRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP----REV 219 (342)
Q Consensus 147 ---~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~----~~~ 219 (342)
....++|+|+|++.+...... +....+++||+||||++.+.. ......+..+ ...+.+++||||- .++
T Consensus 339 ~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el 413 (800)
T 3mwy_W 339 KGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSF-KVANRMLITGTPLQNNIKEL 413 (800)
T ss_dssp ---CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTS-EEEEEEEECSCCCSSCSHHH
T ss_pred cccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHHh-hhccEEEeeCCcCCCCHHHH
Confidence 123578999999999764322 112358999999999986543 2334444444 3567799999982 111
Q ss_pred HHHHHHhcCC-----------------------------CeEEEecccccc--cccccceEEEE----------------
Q 019359 220 ETLARQFLRN-----------------------------PYKVIIGSLELK--ANQSINQVVEV---------------- 252 (342)
Q Consensus 220 ~~~~~~~~~~-----------------------------~~~~~~~~~~~~--~~~~~~~~~~~---------------- 252 (342)
..++..+... +........... .+......+..
T Consensus 414 ~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~ 493 (800)
T 3mwy_W 414 AALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTK 493 (800)
T ss_dssp HHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 1121111110 111110000000 00000000000
Q ss_pred ----------------------------------------------------------echhhHHHHHHHHHHhhcC-CC
Q 019359 253 ----------------------------------------------------------VTEAEKYNRLIKLLKEVMD-GS 273 (342)
Q Consensus 253 ----------------------------------------------------------~~~~~~~~~l~~~l~~~~~-~~ 273 (342)
.....+...+.+++..... ++
T Consensus 494 ~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~ 573 (800)
T 3mwy_W 494 NYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGH 573 (800)
T ss_dssp CCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCC
Confidence 0013355566666666544 78
Q ss_pred cEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCC---CEEEEecccccCCCCCCCC
Q 019359 274 RILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRS---PIMTATDVAARGLGRITVC 342 (342)
Q Consensus 274 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~t~~~~~Gidip~v~ 342 (342)
|+||||.....++.+.+.|...|+++..++|+++..+|..+++.|++++. .+|++|.++++|+|+|.++
T Consensus 574 kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~ 645 (800)
T 3mwy_W 574 RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTAD 645 (800)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCC
T ss_pred eEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccc
Confidence 99999999999999999999999999999999999999999999998654 4999999999999999864
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.95 E-value=3.4e-27 Score=218.72 Aligned_cols=246 Identities=17% Similarity=0.086 Sum_probs=174.3
Q ss_pred HHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEE
Q 019359 52 PIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRS 131 (342)
Q Consensus 52 ~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~ 131 (342)
|.|+......+++++++++||||+|||..+ +..+.. ....+|++|+++|+.|+.+.+++. ++.+
T Consensus 143 p~~~~p~ar~l~rk~vlv~apTGSGKT~~a----l~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v 206 (677)
T 3rc3_A 143 PPNWYPDARAMQRKIIFHSGPTNSGKTYHA----IQKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA----GVPC 206 (677)
T ss_dssp GGGGCHHHHTSCCEEEEEECCTTSSHHHHH----HHHHHH--------SSSEEEEESSHHHHHHHHHHHHHT----TCCE
T ss_pred hhhhCHHHHhcCCCEEEEEcCCCCCHHHHH----HHHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc----CCcE
Confidence 344555566678899999999999999843 333333 223599999999999999999885 6677
Q ss_pred EEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcC-CCccEEE
Q 019359 132 TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR-PDRQTLY 210 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~ 210 (342)
..+.|+..... ..-.+..+++++|++.+. ....++++|+||+|.+.+.+++..+..++..++ ...++++
T Consensus 207 ~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~ 276 (677)
T 3rc3_A 207 DLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCG 276 (677)
T ss_dssp EEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEE
T ss_pred EEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEe
Confidence 77877754411 000112678888875432 235689999999999998889999988888877 6778899
Q ss_pred EEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHH
Q 019359 211 WSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTR 290 (342)
Q Consensus 211 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~ 290 (342)
+|||. +....+... .+....+...... .. .. .... . ...+... .++.+|||+++++++.+++
T Consensus 277 ~SAT~-~~i~~l~~~-~~~~~~v~~~~r~--~~-----l~-~~~~--~----l~~l~~~--~~g~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 277 EPAAI-DLVMELMYT-TGEEVEVRDYKRL--TP-----IS-VLDH--A----LESLDNL--RPGDCIVCFSKNDIYSVSR 338 (677)
T ss_dssp CGGGH-HHHHHHHHH-HTCCEEEEECCCS--SC-----EE-ECSS--C----CCSGGGC--CTTEEEECSSHHHHHHHHH
T ss_pred ccchH-HHHHHHHHh-cCCceEEEEeeec--ch-----HH-HHHH--H----HHHHHhc--CCCCEEEEcCHHHHHHHHH
Confidence 99994 233333332 2333332211100 00 00 0000 0 0011111 3456889999999999999
Q ss_pred HHHhCCCCcEeecCCCCHHHHHHHHHHHhc--CCCCEEEEecccccCCCCCCCC
Q 019359 291 QLRMDGWPALSIHGDKNQSERDWVLAEFRS--GRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 291 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t~~~~~Gidip~v~ 342 (342)
.|.+.++.+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+ +++
T Consensus 339 ~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~ 391 (677)
T 3rc3_A 339 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIR 391 (677)
T ss_dssp HHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBS
T ss_pred HHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Ccc
Confidence 999999999999999999999999999998 889999999999999999 663
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=3.3e-26 Score=213.76 Aligned_cols=286 Identities=19% Similarity=0.196 Sum_probs=184.5
Q ss_pred CCcHHHHhhHHHHh---------cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMAL---------KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~---------~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~ 119 (342)
.|+|||.+++..+. .+.+.++..+||+|||+.++..+...+...+. ......++||++|+ .|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHHHH
Confidence 79999999998763 34678999999999999876655554443321 11124579999996 788999999
Q ss_pred HHHhcCCCCeEEEEEecCCcchh--hHHhhc------CCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCC
Q 019359 120 ALKFGSRAGIRSTCIYGGAPKGP--QIRDLR------RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (342)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (342)
+.+|... .+.+..++++..... ....+. ...+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-
Confidence 9998765 456666666543321 111211 137899999999876532 2223468999999999986643
Q ss_pred hHHHHHHHhhcCCCccEEEEEeecCch----HHHHH---------------HHhc-------------------------
Q 019359 192 EPQIRKIVTQIRPDRQTLYWSATWPRE----VETLA---------------RQFL------------------------- 227 (342)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~SaT~~~~----~~~~~---------------~~~~------------------------- 227 (342)
. .....+..+. ..+.+++||||-.. +..++ ..+.
T Consensus 209 ~-~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 N-QTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp H-HHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred h-HHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2 2233333443 56789999997321 00000 0000
Q ss_pred ----CCCeEEEeccccc--ccccccceEEE--------------------------------------------------
Q 019359 228 ----RNPYKVIIGSLEL--KANQSINQVVE-------------------------------------------------- 251 (342)
Q Consensus 228 ----~~~~~~~~~~~~~--~~~~~~~~~~~-------------------------------------------------- 251 (342)
-.+....-..... ..+......+.
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 0000000000000 00000000000
Q ss_pred ---------------------------EechhhHHHHHHHHHHhhc--CCCcEEEEeCCchhHHHHHHHHHhCCCCcEee
Q 019359 252 ---------------------------VVTEAEKYNRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMDGWPALSI 302 (342)
Q Consensus 252 ---------------------------~~~~~~~~~~l~~~l~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 302 (342)
......+...+..++.... .++|+||||++...++.+.+.|...|+.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 0011233334444444332 47899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCC---EEEEecccccCCCCCCCC
Q 019359 303 HGDKNQSERDWVLAEFRSGRSP---IMTATDVAARGLGRITVC 342 (342)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~~~~~---vlv~t~~~~~Gidip~v~ 342 (342)
||+++.++|..+++.|++|+.. +|++|.++++|+|+++++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~ 489 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGAN 489 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCC
Confidence 9999999999999999998764 899999999999999753
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.93 E-value=1.8e-23 Score=189.53 Aligned_cols=277 Identities=19% Similarity=0.236 Sum_probs=192.6
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.|. .+++.|.-..-.+..|+ +..+.||.|||+++.+|++-.... |..+.|++|+..||.|-.+++..+.
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 566 78888888776666665 889999999999999988755444 5569999999999999999999998
Q ss_pred CCCCeEEEEEecC--------------------------------------------------CcchhhHHhhcCCCcEE
Q 019359 125 SRAGIRSTCIYGG--------------------------------------------------APKGPQIRDLRRGVEIV 154 (342)
Q Consensus 125 ~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~ii 154 (342)
..+|+.+.++... .+.......+ .+||+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCE
Confidence 9999999988872 1111111222 37999
Q ss_pred EeChHHH-HHHHhcc------ccCCCCccEEEEeccchhh-cCC------------Ch----------------------
Q 019359 155 IATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRML-DMG------------FE---------------------- 192 (342)
Q Consensus 155 v~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~-~~~------------~~---------------------- 192 (342)
++|..-+ .+++..+ ......+.+.||||++.++ +.. ..
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 9998765 2334432 1124568999999999822 100 00
Q ss_pred -------------------------------HHHHHHHhh------c---------------------------------
Q 019359 193 -------------------------------PQIRKIVTQ------I--------------------------------- 202 (342)
Q Consensus 193 -------------------------------~~~~~~~~~------~--------------------------------- 202 (342)
..+..+.+. +
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 000000000 0
Q ss_pred ----------------------------CCCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEec
Q 019359 203 ----------------------------RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT 254 (342)
Q Consensus 203 ----------------------------~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
..-.++.+||||.......+.. .++... +.++... +.............
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~-iY~l~v-v~IPtnk-p~~R~d~~d~vy~t 455 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQ-VYGMEV-VVIPTHK-PMIRKDHDDLVFRT 455 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHH-HSCCCE-EECCCSS-CCCCEECCCEEESS
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHH-HhCCeE-EEECCCC-CcceeecCcEEEec
Confidence 0113799999999876655544 444443 3333221 11111122344567
Q ss_pred hhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019359 255 EAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (342)
Q Consensus 255 ~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 333 (342)
...+...+.+.+.+.. .+.++||||+|++.++.+++.|++.|+++..+||+..+.++..+...++.| .|+|||++++
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAg 533 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhh
Confidence 7788888888887753 478999999999999999999999999999999996655555556666655 6999999999
Q ss_pred cCCCCC
Q 019359 334 RGLGRI 339 (342)
Q Consensus 334 ~Gidip 339 (342)
+|+||+
T Consensus 534 RGtDI~ 539 (822)
T 3jux_A 534 RGTDIK 539 (822)
T ss_dssp TTCCCC
T ss_pred CCcCcc
Confidence 999997
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.1e-23 Score=194.37 Aligned_cols=131 Identities=24% Similarity=0.260 Sum_probs=110.3
Q ss_pred HcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 44 ~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+|+ .|++.|..++..+..|+ +..+.||+|||++++++++..... +..++|++||+.|+.|..+++..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 3799 99999999999999988 899999999999999998644433 456999999999999999999999
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHH-HHHHhccc------cCCC---CccEEEEeccchhh
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLR---RVTYLVLDEADRML 187 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~---~~~~iIvDE~h~~~ 187 (342)
....++.+..+.|+.+.... ....+++|+|+||+.+ ++++..+. ..+. .+.++|+||+|.++
T Consensus 144 ~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999998764333 2233589999999999 77777653 3456 79999999999865
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=1.8e-25 Score=181.46 Aligned_cols=167 Identities=23% Similarity=0.224 Sum_probs=119.0
Q ss_pred cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHH-HHHHHHHh
Q 019359 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ-IQEEALKF 123 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q-~~~~~~~~ 123 (342)
.....|+++|.++++.+..++++++.+|||+|||++++.++...+...... ..+.++||++|+++|+.| |.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA--SEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT--TCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc--cCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 344589999999999999999999999999999999988887765442110 125689999999999999 88888888
Q ss_pred cCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccc------cCCCCccEEEEeccchhhcCCChHHH-H
Q 019359 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH------TNLRRVTYLVLDEADRMLDMGFEPQI-R 196 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~------~~~~~~~~iIvDE~h~~~~~~~~~~~-~ 196 (342)
... ++.+..+.|+.............++|+|+||+.+...+.... ..+..++++|+||||++...++...+ .
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 665 677888888766555444444468999999999998877643 44678999999999998766544333 2
Q ss_pred HHHhhc-------------CCCccEEEEEee
Q 019359 197 KIVTQI-------------RPDRQTLYWSAT 214 (342)
Q Consensus 197 ~~~~~~-------------~~~~~~i~~SaT 214 (342)
.+.... .+..+++++|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332211 156799999998
No 76
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.92 E-value=1.1e-25 Score=190.01 Aligned_cols=195 Identities=16% Similarity=0.128 Sum_probs=140.4
Q ss_pred HHHHHhhhhcceeeeccCCCccccccccCCCCHHHHHHHHHcCC------CCCcHHHHhhHHHHhcCCCEEEEcCCCCch
Q 019359 4 TEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGF------VEPTPIQAQGWPMALKGRDLIGIAETGSGK 77 (342)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GK 77 (342)
+++.+++...++..+......+...++. ....+.+....+ ..|+++|.++++.+..+++.++.+|||+||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGK 141 (282)
T 1rif_A 66 GQIKKFCDNFGYKAWIDPQINEKEELSR----KDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGR 141 (282)
T ss_dssp GGHHHHHHHTTCCEEECGGGGCCCCCCH----HHHHHHHHTCCCEETTEECCCCHHHHHHHHHHHHHSEEEECCCTTSCH
T ss_pred HHHHHHHHhcCCeeEecCccCCCCCCCH----HHHHhHHhHHHHhcCCCccCccHHHHHHHHHHHhcCCeEEEcCCCCCc
Confidence 4566677777776654433222222221 122222222222 389999999999988888899999999999
Q ss_pred hhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcCCCcEEEeC
Q 019359 78 TLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIAT 157 (342)
Q Consensus 78 T~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T 157 (342)
|.+++.++...+... ..++||++|+++|+.||.++++++....+..+..+.++..... ......+|+|+|
T Consensus 142 T~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T 211 (282)
T 1rif_A 142 SLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGT 211 (282)
T ss_dssp HHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEEC
T ss_pred HHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEc
Confidence 999877766655432 3479999999999999999999997766677777777765533 222458999999
Q ss_pred hHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecCchH
Q 019359 158 PGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREV 219 (342)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 219 (342)
++++.+.. ...+..++++|+||||++.+ ..+..++..+....+++++|||+++..
T Consensus 212 ~~~l~~~~---~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 212 WQTVVKQP---KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp HHHHTTSC---GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTTS
T ss_pred hHHHHhhH---HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCCcc
Confidence 99875542 22356789999999999853 477778888777899999999997654
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=5.3e-20 Score=169.06 Aligned_cols=131 Identities=19% Similarity=0.101 Sum_probs=99.7
Q ss_pred CCCCCcHHHHhhHHH----HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 019359 46 GFVEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (342)
Q Consensus 46 ~~~~l~~~Q~~~~~~----~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~ 121 (342)
|| ++||+|.+.+.. +..++++++.+|||+|||++|+++++.. +.+++|++||++|+.|+.+++.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHH
Confidence 34 799999997764 4578999999999999999999998872 6689999999999999999999
Q ss_pred HhcCCCCeEEEEEecCCcc---------------------------------hhhH------------------HhhcCC
Q 019359 122 KFGSRAGIRSTCIYGGAPK---------------------------------GPQI------------------RDLRRG 150 (342)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~ 150 (342)
.+....++++..+.|..+. .... +.....
T Consensus 69 ~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ 148 (551)
T 3crv_A 69 KIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYK 148 (551)
T ss_dssp TCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhc
Confidence 9877667777776653210 0001 222346
Q ss_pred CcEEEeChHHHHHHHhccccCC-CCccEEEEeccchhhc
Q 019359 151 VEIVIATPGRLIDMLEAQHTNL-RRVTYLVLDEADRMLD 188 (342)
Q Consensus 151 ~~iiv~T~~~l~~~~~~~~~~~-~~~~~iIvDE~h~~~~ 188 (342)
++|+|+|+..++.........+ ...+++|+||||++.+
T Consensus 149 adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 149 ADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred CCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 8999999999987644433322 4678899999998654
No 78
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.87 E-value=1.6e-21 Score=178.58 Aligned_cols=126 Identities=19% Similarity=0.189 Sum_probs=85.2
Q ss_pred cCCCCCcHHHHhhHHH----HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 45 LGFVEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 45 ~~~~~l~~~Q~~~~~~----~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
.|| .+|++|.+.+.. +..++++++.+|||+|||++++++++.. +.+++|++|+++|+.|+.+++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 467 899999998654 4578999999999999999999988754 567999999999999999988
Q ss_pred HHhcCCCCeEEEEEecCCc--------ch------------------------hh---------------HHhhcCCCcE
Q 019359 121 LKFGSRAGIRSTCIYGGAP--------KG------------------------PQ---------------IRDLRRGVEI 153 (342)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~--------~~------------------------~~---------------~~~~~~~~~i 153 (342)
..+ ++++..+.|... .. .. .+....+++|
T Consensus 72 ~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GGG----TCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred Hhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 774 333333322110 00 00 0111235799
Q ss_pred EEeChHHHHHHHhcccc-------CCCCccEEEEeccchh
Q 019359 154 VIATPGRLIDMLEAQHT-------NLRRVTYLVLDEADRM 186 (342)
Q Consensus 154 iv~T~~~l~~~~~~~~~-------~~~~~~~iIvDE~h~~ 186 (342)
+|+|++.+......... .+...+++|+||||++
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl 187 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNL 187 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGG
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccH
Confidence 99999999864332221 2356789999999997
No 79
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=5.1e-21 Score=156.90 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=121.6
Q ss_pred HHHcCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 019359 42 IAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (342)
Q Consensus 42 l~~~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~ 121 (342)
+.......++++|.++++.+..++++++.||||+|||+.+..+++........ +.+.++++++|+++++.|+.+.+.
T Consensus 54 ~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 54 LQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp HHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHH
Confidence 33334446899999999999999999999999999998877777766554322 124589999999999999988876
Q ss_pred Hhc-CCCCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh-hcCCCh-HHHHHH
Q 019359 122 KFG-SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM-LDMGFE-PQIRKI 198 (342)
Q Consensus 122 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~-~~~~~~-~~~~~~ 198 (342)
... ...+..+..-..... .......+|+|+||+++.+.+.. .+.+++++|+||||.. .+.++. ..++.+
T Consensus 131 ~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 131 FERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp HTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred HHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 542 223333322111100 01113478999999999998876 3678999999999984 444444 345555
Q ss_pred HhhcCCCccEEEEEeecCchHHHHHHHhcCCC
Q 019359 199 VTQIRPDRQTLYWSATWPREVETLARQFLRNP 230 (342)
Q Consensus 199 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 230 (342)
.... ++.|++++|||++... +...+...|
T Consensus 203 ~~~~-~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 203 VQAY-PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHC-TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred HhhC-CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 5554 4789999999998764 444343333
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.86 E-value=2.3e-20 Score=174.23 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=94.8
Q ss_pred CCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhc-CCCcEEEEeCCc
Q 019359 204 PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETK 282 (342)
Q Consensus 204 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~ 282 (342)
...|++++|||++...... .. ....... .........+...+...+...+...+.... .+.++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~--~~~~~~~---r~~~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SG--RVVEQII---RPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CS--EEEEECS---CTTCCCCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hh--Ceeeeee---ccCCCCCCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3568899999987542111 11 1111110 111111112223334455566666665543 578999999999
Q ss_pred hhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 283 KGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 283 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+.++.+++.|.+.|+++..+||++++.+|..+++.|+.|+.+|||||+++++|+|+|+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~ 509 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVS 509 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEE
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 81
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.86 E-value=2.4e-21 Score=158.57 Aligned_cols=138 Identities=22% Similarity=0.131 Sum_probs=107.9
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~ 128 (342)
.++++|.+++..+..++++++.+|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 7899999999999998899999999999999877665543 456999999999999999999885 5
Q ss_pred eE-EEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCcc
Q 019359 129 IR-STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ 207 (342)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 207 (342)
+. +..+.|+... ..+|+|+|++.+....... ...++++|+||+|++.+.. +..+...++ ..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~----~~~i~~~~~-~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAES----YVQIAQMSI-APF 220 (237)
T ss_dssp GGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTT----HHHHHHTCC-CSE
T ss_pred CCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChH----HHHHHHhcc-CCE
Confidence 56 6666665543 3689999999987765421 2458999999999986654 334445454 678
Q ss_pred EEEEEeecCch
Q 019359 208 TLYWSATWPRE 218 (342)
Q Consensus 208 ~i~~SaT~~~~ 218 (342)
++++||||.+.
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 99999998754
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.82 E-value=5e-19 Score=165.18 Aligned_cols=130 Identities=20% Similarity=0.223 Sum_probs=95.3
Q ss_pred CCccEEEEEeecCchHHHHHHHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhc-CCCcEEEEeCCc
Q 019359 204 PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETK 282 (342)
Q Consensus 204 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~ 282 (342)
...|++++|||++...... ........... .......+.......+...+...+.... .+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~-----~~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRP-----TGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCT-----TCCCCCEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecc-----cCCCCCeEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 3578899999986542111 11111111111 0011111223334455566666666554 478999999999
Q ss_pred hhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 283 KGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 283 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
+.++.+++.|.+.|+++..+||++++.+|..+++.|+.|+.+|||||+++++|+|+|+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~ 515 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVS 515 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEE
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 83
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=2.1e-18 Score=159.64 Aligned_cols=80 Identities=26% Similarity=0.194 Sum_probs=64.1
Q ss_pred CCcHHHHhhHHH----HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~----~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
++|+.|.+.+.. +..++++++.+|||+|||++++++++..+... +.+++|++||++++.|+.+++..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHh
Confidence 689999998764 45789999999999999999999999887642 5689999999999999999988875
Q ss_pred CCCCeEEEEEe
Q 019359 125 SRAGIRSTCIY 135 (342)
Q Consensus 125 ~~~~~~~~~~~ 135 (342)
...++++..+.
T Consensus 76 ~~~~~~~~~l~ 86 (620)
T 4a15_A 76 STMKIRAIPMQ 86 (620)
T ss_dssp HHSCCCEEECC
T ss_pred hccCeEEEEEE
Confidence 54455554433
No 84
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.64 E-value=3.2e-15 Score=115.05 Aligned_cols=98 Identities=34% Similarity=0.469 Sum_probs=89.8
Q ss_pred cccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCC
Q 019359 244 QSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRS 323 (342)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 323 (342)
..+.+.+.......+...+.+++... .++++||||+++++++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred ccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 34666777778889999999988875 56789999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecccccCCCCCCCC
Q 019359 324 PIMTATDVAARGLGRITVC 342 (342)
Q Consensus 324 ~vlv~t~~~~~Gidip~v~ 342 (342)
+|||||+++++|+|+|+++
T Consensus 87 ~vlv~T~~~~~Gld~~~~~ 105 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENIS 105 (163)
T ss_dssp SEEEECGGGTTTCCCSCCS
T ss_pred eEEEECChhhcCCchhcCC
Confidence 9999999999999999874
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=119.65 Aligned_cols=116 Identities=31% Similarity=0.439 Sum_probs=89.1
Q ss_pred HHhcCCCeEEEecccccccccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeec
Q 019359 224 RQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIH 303 (342)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~ 303 (342)
..++.+|..+.+.... .....+.+.+.......+...+.+++.+. ++++||||++++.++.+++.|++.|+.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 4466667666665443 34456677777788889999999888763 56899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCC
Q 019359 304 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 304 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip~v~ 342 (342)
|++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~ 124 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQ 124 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCS
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCC
Confidence 999999999999999999999999999999999999874
No 86
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.63 E-value=3.7e-15 Score=115.62 Aligned_cols=97 Identities=25% Similarity=0.391 Sum_probs=88.9
Q ss_pred ccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCC
Q 019359 245 SINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP 324 (342)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 324 (342)
.+.+.+.......+...+.+++... .++++||||+++++++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+
T Consensus 5 ~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 4556677777888999999988875 567999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCC
Q 019359 325 IMTATDVAARGLGRITVC 342 (342)
Q Consensus 325 vlv~t~~~~~Gidip~v~ 342 (342)
|||||+++++|+|+|+++
T Consensus 84 vLvaT~~~~~Gldi~~~~ 101 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVN 101 (172)
T ss_dssp EEEESSCCSTTCCGGGCS
T ss_pred EEEECCchhcCcchhhCC
Confidence 999999999999999874
No 87
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=118.25 Aligned_cols=100 Identities=44% Similarity=0.623 Sum_probs=77.7
Q ss_pred ccccceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCC
Q 019359 243 NQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR 322 (342)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 322 (342)
...+.+.+.......+...+.+++.....++++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+
T Consensus 17 ~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC
Confidence 45567777778888999999999988656789999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccccCCCCCCCC
Q 019359 323 SPIMTATDVAARGLGRITVC 342 (342)
Q Consensus 323 ~~vlv~t~~~~~Gidip~v~ 342 (342)
.+|||||+++++|+|+|+++
T Consensus 97 ~~vLvaT~~~~~Gldi~~~~ 116 (185)
T 2jgn_A 97 SPILVATAVAARGLDISNVK 116 (185)
T ss_dssp SSEEEEEC------CCCSBS
T ss_pred CeEEEEcChhhcCCCcccCC
Confidence 99999999999999999874
No 88
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.61 E-value=1e-14 Score=112.52 Aligned_cols=96 Identities=36% Similarity=0.539 Sum_probs=85.7
Q ss_pred cceEEEEechhh-HHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCC
Q 019359 246 INQVVEVVTEAE-KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP 324 (342)
Q Consensus 246 ~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 324 (342)
+.+.+.....++ +...+.++++.. .++++||||+++++++.++..|.+.++.+..+||++++.+|..+++.|++|+.+
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred cEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 344555555555 888898888875 678999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCC
Q 019359 325 IMTATDVAARGLGRITVC 342 (342)
Q Consensus 325 vlv~t~~~~~Gidip~v~ 342 (342)
|||||+++++|+|+|+++
T Consensus 83 vlv~T~~~~~G~d~~~~~ 100 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVS 100 (165)
T ss_dssp EEEEEGGGTTTCCCCSCS
T ss_pred EEEEcChhhcCCCcccCC
Confidence 999999999999999874
No 89
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=7.7e-15 Score=114.34 Aligned_cols=97 Identities=23% Similarity=0.429 Sum_probs=85.9
Q ss_pred ccceEEEEechh-hHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCC
Q 019359 245 SINQVVEVVTEA-EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRS 323 (342)
Q Consensus 245 ~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 323 (342)
.+.+.+...+.. .+...+.+++... .++++||||+++++++.++..|.+.|+.+..+||++++.+|..+++.|++|+.
T Consensus 7 ~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~ 85 (175)
T 2rb4_A 7 NIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 85 (175)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSC
T ss_pred CceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 455555555554 4888888888764 56799999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecccccCCCCCCCC
Q 019359 324 PIMTATDVAARGLGRITVC 342 (342)
Q Consensus 324 ~vlv~t~~~~~Gidip~v~ 342 (342)
+|||||+++++|+|+|+++
T Consensus 86 ~vLvaT~~~~~Gid~~~~~ 104 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVT 104 (175)
T ss_dssp SEEEECCSCCTTTCCTTEE
T ss_pred eEEEEecchhcCCCcccCC
Confidence 9999999999999999863
No 90
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.56 E-value=2.4e-14 Score=115.00 Aligned_cols=96 Identities=34% Similarity=0.471 Sum_probs=86.6
Q ss_pred cceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCE
Q 019359 246 INQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPI 325 (342)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 325 (342)
+.......+...+...+.+++... .++++||||+++++++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 344555566788888999888764 5789999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCCCC
Q 019359 326 MTATDVAARGLGRITVC 342 (342)
Q Consensus 326 lv~t~~~~~Gidip~v~ 342 (342)
||||+++++|+|+|+++
T Consensus 85 lvaT~~~~~Gidi~~v~ 101 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVD 101 (212)
T ss_dssp EEECTTTTCSSSCCCBS
T ss_pred EEecChhhcCCCCccCc
Confidence 99999999999999874
No 91
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.52 E-value=8.4e-14 Score=117.12 Aligned_cols=96 Identities=33% Similarity=0.469 Sum_probs=87.6
Q ss_pred cceEEEEechhhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCE
Q 019359 246 INQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPI 325 (342)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 325 (342)
+..++.......+...+.+++... .++++||||+++++++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 345566677788999999988776 4789999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCCCC
Q 019359 326 MTATDVAARGLGRITVC 342 (342)
Q Consensus 326 lv~t~~~~~Gidip~v~ 342 (342)
||||+++++|+|+|+++
T Consensus 82 LVaT~va~~Gidi~~v~ 98 (300)
T 3i32_A 82 LVATDVAARGLDIPQVD 98 (300)
T ss_dssp EEECSTTTCSTTCCCCS
T ss_pred EEEechhhcCcccccee
Confidence 99999999999999974
No 92
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.17 E-value=7.4e-15 Score=113.85 Aligned_cols=93 Identities=26% Similarity=0.401 Sum_probs=81.8
Q ss_pred EEEEech-hhHHHHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEE
Q 019359 249 VVEVVTE-AEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMT 327 (342)
Q Consensus 249 ~~~~~~~-~~~~~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 327 (342)
.+..... ..+...+.++++.. .++++||||+++++++.+++.|++.++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 7 ~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLv 85 (170)
T 2yjt_D 7 WYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 85 (170)
Confidence 3334444 66777777777663 567899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccCCCCCCCC
Q 019359 328 ATDVAARGLGRITVC 342 (342)
Q Consensus 328 ~t~~~~~Gidip~v~ 342 (342)
||+++++|+|+|+++
T Consensus 86 aT~~~~~Gid~~~~~ 100 (170)
T 2yjt_D 86 ATDVAARGIDIPDVS 100 (170)
Confidence 999999999999874
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.12 E-value=2.1e-10 Score=95.23 Aligned_cols=90 Identities=18% Similarity=0.323 Sum_probs=79.9
Q ss_pred echhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhC-CCCcEeecCCCCHHHHHHHHHHHhcC-CCC-EEEE
Q 019359 253 VTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSG-RSP-IMTA 328 (342)
Q Consensus 253 ~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vlv~ 328 (342)
.....|...+.+++.+.. .++++||||++...++.+.+.|.+. |+++..+||+++..+|..+++.|+++ +.+ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 345678888888888764 4789999999999999999999885 99999999999999999999999998 677 7889
Q ss_pred ecccccCCCCCCCC
Q 019359 329 TDVAARGLGRITVC 342 (342)
Q Consensus 329 t~~~~~Gidip~v~ 342 (342)
|+++++|+|++.++
T Consensus 172 t~~~g~Glnl~~a~ 185 (271)
T 1z5z_A 172 VKAGGFGINLTSAN 185 (271)
T ss_dssp CCTTCCCCCCTTCS
T ss_pred hhhhcCCcCcccCC
Confidence 99999999999864
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.98 E-value=1.2e-09 Score=101.08 Aligned_cols=146 Identities=21% Similarity=0.243 Sum_probs=85.2
Q ss_pred cHHHHhhHHHHhcCCCEEEEcCCCCchhhH--hHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 019359 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLS--YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (342)
Q Consensus 51 ~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~--~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~ 128 (342)
.+.|..++..+..++.+++.|++|+|||.+ +++..+...... .+.++++++||..++.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~------~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG------ERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS------CCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc------CCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 688999999999999999999999999954 333333332111 256899999999999999887765433332
Q ss_pred eEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccE
Q 019359 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
+......+-....... ..++-.+++.. . +.........++++||||++++ + ...+..++..++...++
T Consensus 225 l~~~~~~~~~~~~~Ti------h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQKKRIPEDASTL------HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCCCSCSCCCBTT------TSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHHhccchhhhhh------HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEE
Confidence 2110000000000000 01111122211 1 1111122236899999999954 2 45667788888877888
Q ss_pred EEEEee
Q 019359 209 LYWSAT 214 (342)
Q Consensus 209 i~~SaT 214 (342)
+++.-.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 776544
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.79 E-value=7.6e-07 Score=83.66 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=59.3
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC-
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR- 126 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~- 126 (342)
..+++.|.+++.. ..+.++|.|++|||||.+.+..+...+..... ...++|++++++..+.++.+.+.+....
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~----~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC----SPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC----CGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC----ChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 4789999999973 46789999999999998866555554443211 1357999999999999999988876332
Q ss_pred -CCeEEEEEe
Q 019359 127 -AGIRSTCIY 135 (342)
Q Consensus 127 -~~~~~~~~~ 135 (342)
.++.+..++
T Consensus 82 ~~~~~v~Tfh 91 (647)
T 3lfu_A 82 QGGMWVGTFH 91 (647)
T ss_dssp CTTCEEEEHH
T ss_pred cCCcEEEcHH
Confidence 244444443
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.77 E-value=1.6e-08 Score=94.76 Aligned_cols=67 Identities=22% Similarity=0.134 Sum_probs=53.6
Q ss_pred CCcHHHHhhHHHHhcCC-CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 49 EPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~-~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.|.+.|.+|+...+..+ -.+|+||+|||||.+.+-.+...+.. +.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~--------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ--------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 58899999999877654 57899999999998855544444432 668999999999999998888764
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.74 E-value=8.6e-08 Score=87.95 Aligned_cols=125 Identities=17% Similarity=0.114 Sum_probs=79.1
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~ 128 (342)
.+++.|.+++..+..++.+++.||+|+|||.+ +..++..+... +.++++++||...+..+.+...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~~------- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL-------GLEVGLCAPTGKAARRLGEVTG------- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHT-------
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCeEEEecCcHHHHHHhHhhhc-------
Confidence 68899999999998889999999999999976 33344444332 6679999999998877665432
Q ss_pred eEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCccE
Q 019359 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
.....++ .+.. ..- + .+.........++++||||++++ ....+..++..++...++
T Consensus 254 ~~a~Tih----------~ll~---~~~-~------~~~~~~~~~~~~dvlIIDEasml----~~~~~~~Ll~~~~~~~~l 309 (574)
T 3e1s_A 254 RTASTVH----------RLLG---YGP-Q------GFRHNHLEPAPYDLLIVDEVSMM----GDALMLSLLAAVPPGARV 309 (574)
T ss_dssp SCEEEHH----------HHTT---EET-T------EESCSSSSCCSCSEEEECCGGGC----CHHHHHHHHTTSCTTCEE
T ss_pred ccHHHHH----------HHHc---CCc-c------hhhhhhcccccCCEEEEcCccCC----CHHHHHHHHHhCcCCCEE
Confidence 1111110 0000 000 0 00111122335899999999986 244666677777656666
Q ss_pred EEEE
Q 019359 209 LYWS 212 (342)
Q Consensus 209 i~~S 212 (342)
+++.
T Consensus 310 ilvG 313 (574)
T 3e1s_A 310 LLVG 313 (574)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.71 E-value=8.4e-08 Score=86.10 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=51.2
Q ss_pred HHcCCCCCcHHHHhhHHHHhc----C-CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 019359 43 AKLGFVEPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (342)
Q Consensus 43 ~~~~~~~l~~~Q~~~~~~~~~----~-~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~ 117 (342)
.-+.|..|++.|++++..+.. + +.+++.|+.|+|||.+. ..++..+.... ...+++++|+...+..+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHH
Confidence 346788999999999987643 2 48999999999999763 44455554431 236999999998887666
Q ss_pred HHH
Q 019359 118 EEA 120 (342)
Q Consensus 118 ~~~ 120 (342)
+.+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 554
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.69 E-value=3.1e-07 Score=85.56 Aligned_cols=70 Identities=21% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 47 ~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
...+.+.|.+++..++.+...+++||+|+|||.+... ++..+... .+.++++++|+...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 3468899999999888878899999999999987443 33444321 1568999999999999998888764
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=5.3e-07 Score=85.85 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=54.7
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
..+.+.|.+++..++.+...++.||+|+|||.+....+ ..+... .+.++|+++|+...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 46789999999998877778999999999998754433 333221 1567999999999999999988774
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.57 E-value=8.2e-07 Score=84.50 Aligned_cols=69 Identities=22% Similarity=0.163 Sum_probs=54.9
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
..+.+.|.+++..++.+...++.||+|+|||.+... ++..+... .+.++++++|+...+.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 467899999999888888889999999999987443 44444332 1567999999999999998888764
No 102
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.79 E-value=0.00011 Score=64.32 Aligned_cols=84 Identities=21% Similarity=0.151 Sum_probs=51.8
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
-.++.|+.|+|||.... ..+.. ...+|++|+++++..|.+.+.+.+.. .
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~---------~~~lVlTpT~~aa~~l~~kl~~~~~~-------------~----- 211 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF---------EEDLILVPGRQAAEMIRRRANASGII-------------V----- 211 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT---------TTCEEEESCHHHHHHHHHHHTTTSCC-------------C-----
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc---------CCeEEEeCCHHHHHHHHHHhhhcCcc-------------c-----
Confidence 46789999999998522 22211 23699999999999988887542100 0
Q ss_pred hhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh
Q 019359 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (342)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (342)
....-+.|.++++-. ........++++||||+-.+
T Consensus 212 ----~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 212 ----ATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp ----CCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGGGS
T ss_pred ----cccceEEEeHHhhcC--CCCCCCCcCCEEEEeCcccC
Confidence 012235676654431 11111224899999999864
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.75 E-value=0.00052 Score=59.35 Aligned_cols=70 Identities=13% Similarity=0.013 Sum_probs=53.5
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~ 124 (342)
.+.|+|...+..+...+.+++..+-+.|||.+....++..+... .+..+++++|+...+..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 78999999998765556689999999999987665555433332 26679999999999887777766553
No 104
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.74 E-value=0.00013 Score=56.66 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~ 110 (342)
|+-.++.||+|+|||..++ ..+.+.... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~~-------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKIA-------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHHT-------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHHC-------CCEEEEEEecc
Confidence 4457789999999997644 444444332 67899998873
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.73 E-value=7.8e-05 Score=59.43 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=51.3
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
.|.-.++.|++|+|||+.++- .+.++... +.+++++.|...- +-...+....++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~-~~~r~~~~-------g~kVli~~~~~d~-----r~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIR-RLHRLEYA-------DVKYLVFKPKIDT-----RSIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEECCCG-----GGCSSCCCCCCCSS-----------
T ss_pred CcEEEEEECCCCCcHHHHHHH-HHHHHHhc-------CCEEEEEEeccCc-----hHHHHHHHhcCCCc-----------
Confidence 345578889999999976444 44444332 5678988775421 00001111111110
Q ss_pred hHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchh
Q 019359 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (342)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (342)
..+-+.+.+.++..+..... -..+++||+||++.+
T Consensus 67 --------~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp --------CCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred --------cccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 12234566667766654322 235899999999964
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.72 E-value=0.00062 Score=62.94 Aligned_cols=72 Identities=13% Similarity=-0.005 Sum_probs=55.5
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~ 126 (342)
.+.|+|...+..+-..+..++..+-|.|||.+....++..+...+ +..++++.|+...+..+...++.+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~------~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK------DKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS------SCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC------CCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 589999999987755677899999999999876554444444332 567999999999999888877776443
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.70 E-value=7.3e-05 Score=57.97 Aligned_cols=40 Identities=23% Similarity=0.102 Sum_probs=26.6
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~ 110 (342)
+++-.++.||+|+|||..++- ++...... +.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~-~~~~~~~~-------g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS-FVEIYKLG-------KKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHH-HHHHHHHC-------CCeEEEEeecc
Confidence 355578999999999986443 33333321 56789988874
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.62 E-value=0.00013 Score=57.40 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=25.9
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~ 111 (342)
.-.++.|++|+|||..++-.+ .+.... +.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a-~r~~~~-------g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRV-RRTQFA-------KQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHH-HHHHHT-------TCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHH-HHHHHC-------CCEEEEEEeccC
Confidence 345689999999997644444 333332 678999998754
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.45 E-value=0.00053 Score=52.85 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
.++.+++.||+|+|||..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 110
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.43 E-value=0.00022 Score=67.15 Aligned_cols=81 Identities=17% Similarity=0.087 Sum_probs=59.2
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC--
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR-- 126 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~-- 126 (342)
.+++.|++++.. .+++++|.|+.|||||.+.+-.+...+..... ...++|++++|+..+.++.+.+......
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~----~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC----CGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 578999999975 46789999999999998866555554443111 1357999999999999999998876442
Q ss_pred -CCeEEEEEe
Q 019359 127 -AGIRSTCIY 135 (342)
Q Consensus 127 -~~~~~~~~~ 135 (342)
.++.+..++
T Consensus 76 ~~~~~v~Tfh 85 (673)
T 1uaa_A 76 ARGLMISTFH 85 (673)
T ss_dssp TTTSEEEEHH
T ss_pred ccCCEEEeHH
Confidence 245555544
No 111
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.38 E-value=0.0003 Score=55.78 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=27.7
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~ 111 (342)
|.-.++.|++|+|||..++-.+..+ .. .+.+++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~-~~-------~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRF-QI-------AQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-HT-------TTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-HH-------CCCeEEEEeecCC
Confidence 5557789999999997644444333 33 2678999988653
No 112
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.34 E-value=0.00042 Score=65.74 Aligned_cols=82 Identities=15% Similarity=0.063 Sum_probs=59.2
Q ss_pred CCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC-
Q 019359 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR- 126 (342)
Q Consensus 48 ~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~- 126 (342)
..|++.|++++.. ...+++|.|+.|||||.+.+--+...+..... ...++|+++.|+..+.++.+.+.+....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~----~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV----APWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC----CGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4789999999975 45789999999999999866555555543211 1357999999999999999888775321
Q ss_pred -CCeEEEEEe
Q 019359 127 -AGIRSTCIY 135 (342)
Q Consensus 127 -~~~~~~~~~ 135 (342)
.++.+..++
T Consensus 84 ~~~~~v~Tfh 93 (724)
T 1pjr_A 84 AEDVWISTFH 93 (724)
T ss_dssp GTTSEEEEHH
T ss_pred ccCcEEeeHH
Confidence 245555443
No 113
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.27 E-value=0.001 Score=61.41 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=74.2
Q ss_pred CCcHHHHhhHHHHhc--CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCC
Q 019359 49 EPTPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~--~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~ 126 (342)
.++..|.+++..+.. ....++.|+-|.|||.+ +-.++..+.. +++|.+|+..-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~-lG~~~a~~~~----------~~~vtAP~~~a~~~l~~~~~~---- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSAL-AGQLISRIAG----------RAIVTAPAKASTDVLAQFAGE---- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHH-HHHHHHHSSS----------CEEEECSSCCSCHHHHHHHGG----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHH-HHHHHHHHHh----------CcEEECCCHHHHHHHHHHhhC----
Confidence 688999999998876 34578999999999954 4334444432 269999998877654443321
Q ss_pred CCeEEEEEecCCcchhhHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCCChHHHHHHHhhcCCCc
Q 019359 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDR 206 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~ 206 (342)
.+-+..|+.+... ....|++|||||=.+ -.+.+..++..+
T Consensus 240 -------------------------~i~~~~Pd~~~~~-------~~~~dlliVDEAAaI----p~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLAS-------DEQADWLVVDEAAAI----PAPLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHHS-------CCCCSEEEEETGGGS----CHHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhhC-------cccCCEEEEEchhcC----CHHHHHHHHhhC----
Confidence 1333455543321 234899999999976 455666666533
Q ss_pred cEEEEEeecC
Q 019359 207 QTLYWSATWP 216 (342)
Q Consensus 207 ~~i~~SaT~~ 216 (342)
..++||.|..
T Consensus 280 ~~v~~~tTv~ 289 (671)
T 2zpa_A 280 PRTLLTTTVQ 289 (671)
T ss_dssp SEEEEEEEBS
T ss_pred CeEEEEecCC
Confidence 2477777753
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.18 E-value=0.0028 Score=53.82 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
+..+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999753
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.18 E-value=0.00046 Score=51.37 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.++.+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999975
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.14 E-value=0.00068 Score=53.14 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=26.6
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~ 111 (342)
|.-.++.||+|+|||..++- .+.+.... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr-~~~r~~~~-------g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIR-RLRRGIYA-------KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHH-HHHHHHHc-------CCceEEEEeccC
Confidence 45578899999999975443 34444432 567999998654
No 117
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.11 E-value=0.00085 Score=67.42 Aligned_cols=70 Identities=21% Similarity=0.184 Sum_probs=54.4
Q ss_pred CCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 49 ~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
.+++.|.+++.. .+++++|.|+.|||||.+.+--++..+..... .-...+++++++|++.+..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHH
Confidence 789999999975 48899999999999999866666666554210 00145799999999999988877665
No 118
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.004 Score=52.36 Aligned_cols=26 Identities=8% Similarity=-0.115 Sum_probs=19.1
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
+.++++.||+|+|||.+ +-.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 46799999999999976 333445544
No 119
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.08 E-value=0.001 Score=51.32 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=25.8
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~ 109 (342)
++=.++.||+|+|||.-.+- .+...... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~-~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMR-RVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHH-HHHHHHHc-------CCeEEEEccc
Confidence 45577899999999965333 33333332 5679999886
No 120
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.95 E-value=0.0022 Score=54.69 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=26.9
Q ss_pred CcHHHHhhHHHHh----cCC---CEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 50 PTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 50 l~~~Q~~~~~~~~----~~~---~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
++|+|.+++..+. +++ ..++.||.|+|||..+.. +...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 4678888776554 332 389999999999976443 334443
No 121
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.92 E-value=0.0086 Score=45.88 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+++++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999753
No 122
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.87 E-value=0.0083 Score=46.36 Aligned_cols=138 Identities=15% Similarity=0.056 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHH-HHHHHHHHHHHhcCCCCeEEEEEecCCcchh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE-LAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342)
...+++..+.|.|||.+++..++..+.. |.+|+|+--.+. ...--...+.++ ++.+.....+-....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~ 95 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWET 95 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCC
Confidence 3578999999999999877777777655 778999844331 000001122232 233322221111000
Q ss_pred hHHhhcCCCcEEEeChHHHHHHHhccccCCCCccEEEEeccchhhcCC--ChHHHHHHHhhcCCCccEEEEEeecCchHH
Q 019359 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG--FEPQIRKIVTQIRPDRQTLYWSATWPREVE 220 (342)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 220 (342)
....- +. ......+...... ..-..+|+||+||+-.....+ -.+.+..++...+....+|+.+--+++.+-
T Consensus 96 ~~~~~----~~--~~a~~~l~~a~~~-l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 96 QNREA----DT--AACMAVWQHGKRM-LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp GGHHH----HH--HHHHHHHHHHHHH-TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CCcHH----HH--HHHHHHHHHHHHH-HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 00000 00 0001112222211 112569999999998654444 235555666655555555554444555443
No 123
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.84 E-value=0.011 Score=46.60 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=23.6
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEee
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 214 (342)
....++++||+|.+... ....+..++........+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 34678999999987432 233444445544444555554433
No 124
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.79 E-value=0.0083 Score=46.91 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=17.7
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
+++++.||+|+|||..+. .+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 689999999999997533 333433
No 125
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.78 E-value=0.0095 Score=49.42 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=31.6
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHH--hcCCCEEEEcCCCCchhhHh
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMA--LKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~--~~~~~~l~~~~tG~GKT~~~ 81 (342)
..|...|+++.-.+...+.+...-. ......+.+..+ ...+++++.||+|+|||..+
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVE--LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTH--HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHH--HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3445568887655555555543210 000011222222 34578999999999999753
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.77 E-value=0.0095 Score=52.35 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=33.2
Q ss_pred CCccEEEEeccchhh---cCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHH
Q 019359 173 RRVTYLVLDEADRML---DMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQ 225 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~---~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 225 (342)
..++++|+|++-+.. +......+..+.....+...++.++|+........+..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~ 233 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASR 233 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHH
Confidence 358999999998643 22233455555566666667778888865554444433
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.75 E-value=0.0099 Score=52.72 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
..+++.||+|+|||..+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999754
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.012 Score=51.09 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
++.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999753
No 129
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.71 E-value=0.0028 Score=46.67 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=16.3
Q ss_pred hcCCCEEEEcCCCCchhhH
Q 019359 62 LKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~ 80 (342)
..+.++++.||+|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 4567899999999999974
No 130
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.71 E-value=0.017 Score=47.56 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
.++++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999997643
No 131
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.65 E-value=0.0023 Score=54.32 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=24.3
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEe
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 213 (342)
..+++++||+|.+........+..+++..+...++|+.|.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 5789999999987512234445555555544555555443
No 132
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.61 E-value=0.026 Score=43.23 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+++++.||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999753
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.60 E-value=0.0045 Score=49.77 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
.++.+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999753
No 134
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.42 E-value=0.028 Score=49.47 Aligned_cols=56 Identities=25% Similarity=0.112 Sum_probs=31.1
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc--CcHHHHHHHHHHHHHhcCCCCeEEE
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA--PTRELAVQIQEEALKFGSRAGIRST 132 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~--p~~~l~~q~~~~~~~~~~~~~~~~~ 132 (342)
-+++.|++|+|||++....+ .++... +.+++++. |.+.-+ .+.++.++...++.+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~~-------G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQKR-------GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHTT-------TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEE
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHHC-------CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEE
Confidence 47888999999998744433 333332 55666665 333322 2334444444565554
No 135
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.39 E-value=0.0037 Score=52.64 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCCchhhHhHH
Q 019359 64 GRDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~ 83 (342)
++++++.||+|+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999986443
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.018 Score=49.91 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999753
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.27 E-value=0.0096 Score=51.74 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999753
No 138
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.06 Score=46.67 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
.+.+|+.||+|+|||+.
T Consensus 182 prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CCCEEEESCSSSSHHHH
T ss_pred CCceEEeCCCCCCHHHH
Confidence 47899999999999975
No 139
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.021 Score=48.29 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEe
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 213 (342)
....++|+||+|.+... ....+...++..+....+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 34679999999987432 23344444554444445554443
No 140
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.08 E-value=0.015 Score=49.29 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=30.3
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCcHHHHh-hHH-HHhcCCCEEEEcCCCCchhhHh
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQ-GWP-MALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~-~~~-~~~~~~~~l~~~~tG~GKT~~~ 81 (342)
..|...|+++.-.+...+.+...-. ++.... .+. .....+++++.||+|+|||..+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3455668887655555555543210 010000 000 0112357999999999999753
No 141
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.07 E-value=0.016 Score=48.59 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.++++.||+|+|||.++
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999764
No 142
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.06 E-value=0.019 Score=48.07 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=30.3
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHH-HhhHHH--HhcCCCEEEEcCCCCchhhHh
Q 019359 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQ-AQGWPM--ALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q-~~~~~~--~~~~~~~l~~~~tG~GKT~~~ 81 (342)
.|...|++++-.+...+.+...-. ++.. .+.+.. +..++.+++.||+|+|||..+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 455668887555555454443100 0100 011111 234578999999999999753
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.05 E-value=0.028 Score=48.58 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
++.+++.||+|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999753
No 144
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.96 E-value=0.07 Score=42.55 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.9
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.||+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999753
No 145
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.94 E-value=0.018 Score=49.26 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=23.8
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEee
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 214 (342)
...++++||+|.+... ....+...++..+....+++.+..
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeCc
Confidence 4679999999987432 233444455555445555554443
No 146
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.88 E-value=0.084 Score=45.45 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.||.|+|||..+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 147
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.87 E-value=0.037 Score=48.57 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=55.4
Q ss_pred cCCCcEEEEeCCchhHHHHHHHHHh---CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 270 MDGSRILIFTETKKGCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
..+.++||.+|+++-+.++++.+++ .++++..++|+.+..++....+.+..|+.+|+|+|+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp 125 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECH
Confidence 3578999999999999999999988 588999999999998888888999999999999994
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.75 E-value=0.035 Score=44.70 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=32.2
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
..|.-+++.||+|+|||..++-.+...... +..++++..... ..++.+.+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--------~~~v~~~~~e~~-~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM--------GEPGIYVALEEH-PVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT--------TCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEccCC-HHHHHHHHHHc
Confidence 356778999999999997644333333222 445777765433 35555555543
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.68 E-value=0.059 Score=45.83 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999753
No 150
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.65 E-value=0.083 Score=42.93 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+.+++.||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999753
No 151
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.034 Score=47.62 Aligned_cols=43 Identities=9% Similarity=0.269 Sum_probs=26.6
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEeecC
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP 216 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 216 (342)
....++|+||+|.+ +......+...+...+....+|+.|..+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 35779999999984 33334555555665555555665555443
No 152
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.63 E-value=0.049 Score=45.61 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=22.4
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
....++|+||+|.+.... .+.+...++..++...+|+.|
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 457899999999874332 233444444444344444444
No 153
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.62 E-value=0.039 Score=52.46 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=58.0
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecc-cccCCCCCC
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV-AARGLGRIT 340 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~~~Gidip~ 340 (342)
.+.+++|.+|++.-+.++++.+++ .++++..++|+++..++....+.+..|+.+|+|+|.. +...+++.+
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~ 490 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 490 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSC
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccC
Confidence 478999999999998888877764 3789999999999999999999999999999999953 334444444
No 154
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.62 E-value=0.089 Score=41.78 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=17.1
Q ss_pred HhcCCCEEEEcCCCCchhhHhH
Q 019359 61 ALKGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~ 82 (342)
+..|.-+++.||+|+|||..+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHH
Confidence 3456778999999999997543
No 155
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.50 E-value=0.044 Score=48.63 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.6
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999753
No 156
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.49 E-value=0.055 Score=46.08 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=24.3
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 212 (342)
....++|+||+|.+... ....+...++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999987432 2344555556555555555444
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.25 E-value=0.091 Score=45.08 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+.+++.||+|+|||..+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999753
No 158
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.19 E-value=0.056 Score=48.99 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=24.0
Q ss_pred CccEEEEeccchhhcCCC--hHHHHHHHhhcCCCccEEEEEeec
Q 019359 174 RVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATW 215 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT~ 215 (342)
...++++||+|.+..... ...+..++.. ....+|+++++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 457899999998765322 1333344333 245577777764
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.97 E-value=0.07 Score=44.87 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=22.4
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEe
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 213 (342)
...++|+||+|.+.... ...+...+...+....+|+.|.
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeC
Confidence 36799999999874321 2333444444444455555443
No 160
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.97 E-value=0.058 Score=47.84 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+.+++.||+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999753
No 161
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=94.94 E-value=0.14 Score=45.78 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019359 260 NRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 339 (342)
Q Consensus 260 ~~l~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gidip 339 (342)
..+..++++ .+.++++.|.+...++.+.+.|.+.++....... .. .+. ...|.|+..-++.|+-+|
T Consensus 372 ~~L~~~~~~--~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~-~~---------~~~--~g~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 372 DALRKFLET--FDGPVVFSVESEGRREALGELLARIKIAPQRIMR-LD---------EAS--DRGRYLMIGAAEHGFVDT 437 (483)
T ss_dssp HHHHHHHHH--CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSC-GG---------GCC--TTCEEEEESCCCSCEEET
T ss_pred HHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCc-hh---------hcC--CCcEEEEEcccccCcccC
Confidence 455555533 2578999999999999999999998887654422 11 112 235777777889999877
Q ss_pred C
Q 019359 340 T 340 (342)
Q Consensus 340 ~ 340 (342)
+
T Consensus 438 ~ 438 (483)
T 3hjh_A 438 V 438 (483)
T ss_dssp T
T ss_pred C
Confidence 6
No 162
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.80 E-value=0.11 Score=43.74 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999753
No 163
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.70 E-value=0.087 Score=46.87 Aligned_cols=40 Identities=20% Similarity=0.071 Sum_probs=25.5
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~ 109 (342)
.|.-+++.|++|+|||..++-.+....... +..++++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEECC
Confidence 456688999999999975444333333221 4457887653
No 164
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.66 E-value=0.038 Score=46.85 Aligned_cols=50 Identities=24% Similarity=0.100 Sum_probs=30.0
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
..|.-+++.|++|+|||..++-.+...... +..++|+..--. ..|+...+
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--------g~~Vl~fSlEms-~~ql~~Rl 93 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALND--------DRGVAVFSLEMS-AEQLALRA 93 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSSC-HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCC-HHHHHHHH
Confidence 345668899999999997544433333321 566888865322 23444443
No 165
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.56 E-value=0.13 Score=51.17 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=55.3
Q ss_pred cCCCcEEEEeCCchhHHHHHHHHHh---CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 270 MDGSRILIFTETKKGCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
..+.++||.+|+++-+.++++.+++ .++++..++|+.+..++....+.+..|+.+|+|+|+
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp 182 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 182 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECH
Confidence 3578899999999999999999998 567899999999998888999999999999999994
No 166
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.53 E-value=0.094 Score=46.51 Aligned_cols=40 Identities=25% Similarity=0.027 Sum_probs=25.2
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~ 109 (342)
.|.-+++.|++|+|||..++-.+....... +..++++..-
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-------g~~vl~~slE 238 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-------GVGVGIYSLE 238 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-------CCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEECC
Confidence 345688999999999975444333333221 4457887653
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.44 E-value=0.082 Score=46.18 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=14.0
Q ss_pred CCEEE--EcCCCCchhhHh
Q 019359 65 RDLIG--IAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~--~~~tG~GKT~~~ 81 (342)
+.+++ .||.|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46788 899999999753
No 168
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.036 Score=48.71 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=32.8
Q ss_pred CccccccccCCCCHHHHHHHHHc---CCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
..|...|++.+--+...+.+... .+..+.-++... +...+.+|+.||+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHH
Confidence 45666799887666666665531 111221111111 12347899999999999975
No 169
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.03 E-value=0.26 Score=44.19 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
...+++.||+|+|||.++
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999853
No 170
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.03 E-value=0.2 Score=40.04 Aligned_cols=22 Identities=23% Similarity=0.025 Sum_probs=17.3
Q ss_pred cCCCEEEEcCCCCchhhHhHHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLP 84 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~ 84 (342)
.|.-+++.||+|+|||..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 4577899999999999764443
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.00 E-value=0.12 Score=53.89 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=30.1
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
+++++++.+|+|+|||..+...+...... +.+++++.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--------G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEccccc
Confidence 36789999999999998765554444332 6678888775443
No 172
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.93 E-value=0.38 Score=43.61 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=55.9
Q ss_pred cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 270 MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
..++++||.+|++.-+....+.|++.|+++..++++.+..++.........|+.+++++|+
T Consensus 63 ~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 63 LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp HSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred HhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3467899999999999999999999999999999999998888889999999999999994
No 173
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.89 E-value=2.5 Score=35.58 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
+.+++.||.|+|||..
T Consensus 31 ~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI 46 (357)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6789999999999975
No 174
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.83 E-value=0.1 Score=42.02 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=17.9
Q ss_pred HhcCCCEEEEcCCCCchhhHhH
Q 019359 61 ALKGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~ 82 (342)
+..|.-+.+.||.|+|||+.+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 4567889999999999997543
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.74 E-value=0.051 Score=39.86 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=16.7
Q ss_pred hcCCCEEEEcCCCCchhhHh
Q 019359 62 LKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~ 81 (342)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35678999999999999753
No 176
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=93.71 E-value=0.21 Score=45.99 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=54.4
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHH--hcCCCCEEEEec
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEF--RSGRSPIMTATD 330 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~vlv~t~ 330 (342)
.++++||.+|++.-++...+.|.+.|+++..++|+.+..++..+...+ ..+..+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 467899999999999999999999999999999999999888888888 468899999996
No 177
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=93.60 E-value=0.24 Score=41.44 Aligned_cols=80 Identities=11% Similarity=0.023 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHHhhcC-CCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019359 255 EAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (342)
Q Consensus 255 ~~~~~~~l~~~l~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 333 (342)
.+.|...+-+++....+ +.|++||++..+..+-+.+++...++...-+.|.....++. -..++..+.+.|+...
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 56777777777776654 78999999999999999999999999999999885542211 1244556666688777
Q ss_pred cCCCCC
Q 019359 334 RGLGRI 339 (342)
Q Consensus 334 ~Gidip 339 (342)
-|+|.|
T Consensus 182 ~gin~~ 187 (328)
T 3hgt_A 182 NFTKYP 187 (328)
T ss_dssp CTTTSC
T ss_pred CCcCcc
Confidence 788754
No 178
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.35 E-value=0.38 Score=39.52 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.3
Q ss_pred HHhcCCCEEEEcCCCCchhhHhHH
Q 019359 60 MALKGRDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~~~~ 83 (342)
-+..|+-+++.||.|+|||..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHH
Confidence 456788899999999999975443
No 179
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.26 E-value=0.3 Score=47.24 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.++++.||+|+|||..+
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 57999999999999753
No 180
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.17 E-value=0.098 Score=39.61 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=41.1
Q ss_pred cHHHHhhHHHHhcC--CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHH
Q 019359 51 TPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (342)
Q Consensus 51 ~~~Q~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q 115 (342)
.+-|..++..+... +-.++.++-|++|+...+..++..... .|.+|.+|+|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHHH
Confidence 45688888877543 467888999999998744444433333 27889999998766543
No 181
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.94 E-value=0.18 Score=45.99 Aligned_cols=17 Identities=35% Similarity=0.264 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
+..+++.||+|+|||..
T Consensus 108 g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSL 124 (543)
T ss_dssp SCEEEEESSSSSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56799999999999975
No 182
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.68 E-value=1.1 Score=37.26 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchhhHhHH
Q 019359 64 GRDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~ 83 (342)
++-+.+.++.|+|||.++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44567789999999976443
No 183
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.61 E-value=0.14 Score=46.23 Aligned_cols=39 Identities=21% Similarity=-0.011 Sum_probs=25.8
Q ss_pred HHHHHcCCCCCcHHHHhhHH-HHhcCCCEEEEcCCCCchhhH
Q 019359 40 EVIAKLGFVEPTPIQAQGWP-MALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 40 ~~l~~~~~~~l~~~Q~~~~~-~~~~~~~~l~~~~tG~GKT~~ 80 (342)
..+...|. +.+.+...+. .+..|..+++.||||+|||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44555552 3344444443 356788999999999999974
No 184
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.44 E-value=0.5 Score=47.23 Aligned_cols=92 Identities=15% Similarity=0.059 Sum_probs=65.7
Q ss_pred EEEEechhhHHHHHH-HHHHhhcCCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCC
Q 019359 249 VVEVVTEAEKYNRLI-KLLKEVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRS 323 (342)
Q Consensus 249 ~~~~~~~~~~~~~l~-~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 323 (342)
.+.......|..... ..+.....+.+++|.+|+..-+.+.++.+++ .++++..+++..+..++...++....|+.
T Consensus 628 ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~ 707 (1151)
T 2eyq_A 628 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 707 (1151)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 333334444443322 2223334578999999999999988888764 36788999999999999999999999999
Q ss_pred CEEEEe-cccccCCCCCC
Q 019359 324 PIMTAT-DVAARGLGRIT 340 (342)
Q Consensus 324 ~vlv~t-~~~~~Gidip~ 340 (342)
+|+|+| ..+...+.+.+
T Consensus 708 dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 708 DILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp SEEEECTHHHHSCCCCSS
T ss_pred CEEEECHHHHhCCccccc
Confidence 999999 44444454443
No 185
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=92.34 E-value=0.28 Score=49.27 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=41.9
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCC----ccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPR----LVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~----~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
...+|.|+.|||||.+....++..+..... ...-.-.++|+|+-|++-+.++.+.+.+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 456999999999999877777777653210 0000134799999999999998887765
No 186
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.23 E-value=0.096 Score=46.04 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+.+|+.||+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 478999999999999853
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.13 E-value=0.29 Score=46.52 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
+.+|+.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999975
No 188
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.09 E-value=0.27 Score=41.13 Aligned_cols=49 Identities=12% Similarity=-0.099 Sum_probs=30.8
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.+++.+|+|+|||..++-.+....... .+.+++++..-..+... .++++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g------~g~~vlyId~E~s~~~~---ra~~l 78 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY------PDAVCLFYDSEFGITPA---YLRSM 78 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC------TTCEEEEEESSCCCCHH---HHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC------CCceEEEEeccchhhHH---HHHHh
Confidence 578999999999976554443333221 15578888876655322 35555
No 189
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.00 E-value=0.14 Score=45.04 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=30.7
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHH--hcCCCEEEEcCCCCchhhH
Q 019359 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMA--LKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~--~~~~~~l~~~~tG~GKT~~ 80 (342)
.|.-.|++.+=-+.+.+.+...=. +.-..-+.+..+ ...+.+|+.||+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~--~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVE--LPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTH--HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH--HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHH
Confidence 455568887655555555543110 000011223322 2357899999999999975
No 190
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.64 E-value=0.14 Score=44.92 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
.+.+|+.||+|+|||+.
T Consensus 206 prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CCEEEEESCTTTTHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999975
No 191
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.55 E-value=0.26 Score=43.10 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=23.0
Q ss_pred HHHHhhHHHHh--cCCCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 52 PIQAQGWPMAL--KGRDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 52 ~~Q~~~~~~~~--~~~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
+.+..++..+. .+.-+++.||||+|||+. +-.++..+
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 34444554443 345688999999999975 43344443
No 192
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.27 E-value=0.24 Score=38.77 Aligned_cols=31 Identities=26% Similarity=0.154 Sum_probs=25.8
Q ss_pred CcHHHHhhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 50 l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
-+..|..++..+..|+-+.+.||.|+|||+.
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3445677888888899999999999999974
No 193
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.18 E-value=1.6 Score=41.52 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
..++++.||+|+|||..+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999753
No 194
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.13 E-value=0.86 Score=36.64 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=42.4
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+++++-+..+++.+++. ++.+..++|+.+.......+ .+..+|+|+|.
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp 169 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATP 169 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECH
Confidence 557999999999999998887654 78889999988765443332 34678999993
No 195
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.96 E-value=0.69 Score=36.26 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=43.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC-----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+++++-+.++++.+++. +.++..++|+.+..... +.+..+..+|+|+|.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTP 142 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCH
Confidence 348999999999999998887754 67889999988765443 344556779999994
No 196
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.95 E-value=0.17 Score=44.12 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=30.1
Q ss_pred CccccccccCCCCHHHHHHHHH---cCCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhHh
Q 019359 23 PRPIRIFQEANFPDYCLEVIAK---LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~ 81 (342)
..|.-.|++.+=-+.+.+.+.. +.+..+.-++... +...+.+|+.||+|+|||+.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHH
Confidence 3456678887533433443332 1121221111111 123478999999999999853
No 197
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=90.80 E-value=0.93 Score=30.40 Aligned_cols=46 Identities=17% Similarity=0.388 Sum_probs=39.1
Q ss_pred EEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhc
Q 019359 275 ILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 320 (342)
Q Consensus 275 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (342)
.+||.+..+-...+.+.+++.|.++..++++..++.|...++.|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 4677777888888999999999999999999999888888888864
No 198
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.63 E-value=1.5 Score=32.55 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=52.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..... ..+. ...+|+|+| +. ....+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~-~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DV-AARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GG-GTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Ch-hhcCCchhcC
Confidence 457999999999999999888874 77888899886554432 2232 247899999 32 3345667778
Q ss_pred cEEEEec
Q 019359 176 TYLVLDE 182 (342)
Q Consensus 176 ~~iIvDE 182 (342)
+++|.-+
T Consensus 105 ~~Vi~~~ 111 (163)
T 2hjv_A 105 SLVINYD 111 (163)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887644
No 199
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.38 E-value=3.8 Score=34.46 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=30.6
Q ss_pred CccEEEEeccchhh-cCCChHHHHHHHhhcCCCccEEEEEeecCchHHHHHHH
Q 019359 174 RVTYLVLDEADRML-DMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQ 225 (342)
Q Consensus 174 ~~~~iIvDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 225 (342)
..+++++|.+-... .......+..+...+.++..++.+.++...........
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~ 263 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQ 263 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHH
Confidence 36788899887542 22233445555555556667777877765554444443
No 200
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=90.05 E-value=0.4 Score=32.90 Aligned_cols=45 Identities=9% Similarity=0.081 Sum_probs=36.6
Q ss_pred HHHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCC
Q 019359 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (342)
Q Consensus 263 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (342)
.+.+.....++++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 334444445778999999988899999999999999999999765
No 201
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.86 E-value=0.57 Score=38.09 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHHHhcCC-----CEEEEcCCCCchhhHhH
Q 019359 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGR-----DLIGIAETGSGKTLSYL 82 (342)
Q Consensus 34 ~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~-----~~l~~~~tG~GKT~~~~ 82 (342)
--..+.+.|+..|+. +...-. .+..+++++ .+++.||+|+|||..+.
T Consensus 71 ~~n~i~~~l~~qg~~-~~~~~~-~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 71 SSNRIYKILELNGYD-PQYAAS-VFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GGCHHHHHHHHTTCC-HHHHHH-HHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred chHHHHHHHHHcCCC-HHHHHH-HHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344777888888873 222222 234445442 48999999999997543
No 202
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.86 E-value=0.33 Score=42.85 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=30.7
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~ 114 (342)
...++++.|+||+|||... ..++..+... +..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 3578999999999999863 3344443332 556888888777753
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.85 E-value=0.38 Score=37.41 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCCCcHHHHhhHHHHhcC----CCEEEEcCCCCchhhHh
Q 019359 37 YCLEVIAKLGFVEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 37 ~~~~~l~~~~~~~l~~~Q~~~~~~~~~~----~~~l~~~~tG~GKT~~~ 81 (342)
.+.+.|.-.+. .+... ...+..+.++ +.+++.||+|+|||..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 45555554443 33333 3334444443 35899999999999753
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.58 E-value=0.35 Score=41.34 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=18.9
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
..+..+++.||||+|||+. +-.++..+
T Consensus 121 ~~~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 3456789999999999975 33344443
No 205
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.51 E-value=0.98 Score=36.04 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=42.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+|+++-+.++.+.+++ .++.+..++|+.+.......+. ...+|+|+|+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp 160 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATP 160 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECH
Confidence 56799999999999998877765 4788999999988665544443 2478999994
No 206
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.46 E-value=0.35 Score=38.23 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=17.9
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhh
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
++++.++.|+|||.+++-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 588899999999987555444443
No 207
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.46 E-value=0.16 Score=38.49 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
+.-+++.|++|+|||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999975
No 208
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.31 E-value=0.21 Score=38.70 Aligned_cols=21 Identities=19% Similarity=0.010 Sum_probs=16.4
Q ss_pred HhcCCCEEEEcCCCCchhhHh
Q 019359 61 ALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~ 81 (342)
+..++.+++.|++|+|||..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHH
Confidence 345678999999999999753
No 209
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.29 E-value=0.23 Score=39.80 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=30.9
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~ 123 (342)
.|.-+++.|++|+|||..++-.+.+.+... +..+++++-.. -..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E~-~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLEE-RARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeecccC-CHHHHHHHHHHc
Confidence 456789999999999975443333333221 34577776432 234555555443
No 210
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.27 E-value=0.73 Score=36.46 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=42.4
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC-----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+++++-+.++++.+++. ++++..++|+.+..+....+ ...+|+|+|.
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 568999999999999999888763 67788899988765544332 3578999994
No 211
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.23 E-value=2.3 Score=31.92 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=51.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..... ..+. ...+|+|+|. .....+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccC
Confidence 567999999999999888888773 67888899886654442 2222 2478999993 23445677788
Q ss_pred cEEEE
Q 019359 176 TYLVL 180 (342)
Q Consensus 176 ~~iIv 180 (342)
+++|.
T Consensus 104 ~~Vi~ 108 (175)
T 2rb4_A 104 TIVVN 108 (175)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88885
No 212
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.16 E-value=0.17 Score=41.22 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=17.1
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+.+++.||+|+|||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45677899999999999975
No 213
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.08 E-value=0.71 Score=39.54 Aligned_cols=19 Identities=42% Similarity=0.497 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
...++++.||+|+|||.++
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3468999999999999853
No 214
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.92 E-value=0.46 Score=41.26 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=28.4
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
.+.+.++.||+|+|||...-. ++..+... +.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~-------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQ-------GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTT-------TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHC-------CCEEEEEeCCcCH
Confidence 567899999999999975433 33333321 5567888776543
No 215
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.82 E-value=0.41 Score=39.76 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhhHhHH
Q 019359 64 GRDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~ 83 (342)
++.+++.||+|+|||++...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688899999999986444
No 216
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.81 E-value=0.23 Score=41.92 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=18.3
Q ss_pred HHHhcCCCEEEEcCCCCchhhH
Q 019359 59 PMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 59 ~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
..+..++++++.||+|+|||..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHH
Confidence 3445678999999999999975
No 217
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=88.80 E-value=0.78 Score=32.63 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=37.3
Q ss_pred HHHHHHHhhcCC-CcEEEEe-CCchhHHHHHHHHHhCCCCcEeecCCCCHH
Q 019359 261 RLIKLLKEVMDG-SRILIFT-ETKKGCDQVTRQLRMDGWPALSIHGDKNQS 309 (342)
Q Consensus 261 ~l~~~l~~~~~~-~~~lvf~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 309 (342)
.+...+.....+ ++++||| .+-..+...+..|+..|+++..+.|++..-
T Consensus 77 ~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 77 DIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 344444444456 7899999 577788899999999999999999987643
No 218
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.76 E-value=0.88 Score=46.98 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=53.0
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
|+-+.+.+|.|+|||..++..+.+ .... +..++++.+-.+|.... ++.++-..+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~-~~~~-------g~~~~~i~~e~~~~~~~---~~~~Gv~~~--------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAA-AQRE-------GKTCAFIDAEHALDPIY---ARKLGVDID--------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH-HHHT-------TCCEEEECTTSCCCHHH---HHHTTCCGG---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH-HHhc-------CCeEEEEecCCCCCHHH---HHHcCCCHH---------------
Confidence 356889999999999875554433 3332 66789988877775543 555533221
Q ss_pred HHhhcCCCcEEEeChHH---HHHHHhccccCCCCccEEEEeccchhhc
Q 019359 144 IRDLRRGVEIVIATPGR---LIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (342)
Q Consensus 144 ~~~~~~~~~iiv~T~~~---l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (342)
+++++-|+. .+...... ..-..+++||||.+-.+..
T Consensus 1485 --------~l~~~~p~~~e~~l~~~~~~-~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 --------NLLCSQPDTGEQALEICDAL-ARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp --------GCEEECCSSHHHHHHHHHHH-HHHTCCSEEEESCSTTCCC
T ss_pred --------HeEEeCCCcHHHHHHHHHHH-HHcCCCCEEEEccHHhCCc
Confidence 244444432 22222111 1113488999999987643
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.68 E-value=0.32 Score=39.61 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.+.++++.||+|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 457899999999999975
No 220
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.65 E-value=0.22 Score=44.72 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.0
Q ss_pred hhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 56 QGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 56 ~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
.+...+..+.++++.||+|+|||..
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHH
Confidence 3444556788999999999999974
No 221
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.55 E-value=0.21 Score=38.64 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
++.+++.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 222
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.52 E-value=0.27 Score=42.16 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=18.1
Q ss_pred HHhcCCCEEEEcCCCCchhhH
Q 019359 60 MALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~ 80 (342)
.+..|..+++.||+|+|||+.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 456789999999999999974
No 223
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.40 E-value=2.1 Score=31.70 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=51.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..... ..+. ....|+|+|. . .....++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhcCCCcccC
Confidence 457999999999999988888873 67788889886654432 2222 3478999993 2 3345567778
Q ss_pred cEEEEec
Q 019359 176 TYLVLDE 182 (342)
Q Consensus 176 ~~iIvDE 182 (342)
+++|.-+
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887644
No 224
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.39 E-value=2.2 Score=32.67 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=51.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+..... ..+. ...+|+|+| +... ..+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 446999999999999999888874 67888899886654432 2222 357899999 3333 35567778
Q ss_pred cEEEEe
Q 019359 176 TYLVLD 181 (342)
Q Consensus 176 ~~iIvD 181 (342)
+++|.-
T Consensus 124 ~~VI~~ 129 (191)
T 2p6n_A 124 QHVINY 129 (191)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 888763
No 225
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.35 E-value=0.27 Score=38.06 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.++.+.+.||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999974
No 226
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=88.34 E-value=2.4 Score=33.52 Aligned_cols=55 Identities=25% Similarity=0.252 Sum_probs=40.4
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
.+.++||.+|+++-+..+++.+++. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3678999999999999999888764 46788888887654433322 4678999994
No 227
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=88.26 E-value=0.35 Score=48.49 Aligned_cols=52 Identities=8% Similarity=0.046 Sum_probs=35.8
Q ss_pred echhhHHHHHHHHHHhhcC-----CCcEEEEeCCch-hHHHHHHHHHhCCCCcEeecC
Q 019359 253 VTEAEKYNRLIKLLKEVMD-----GSRILIFTETKK-GCDQVTRQLRMDGWPALSIHG 304 (342)
Q Consensus 253 ~~~~~~~~~l~~~l~~~~~-----~~~~lvf~~~~~-~~~~l~~~L~~~~~~~~~~~~ 304 (342)
.+.......++..+.+... .+.+.|.|.+.. .+..+...|.+.|+++....+
T Consensus 318 ~~~~~Ea~~ia~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 318 ANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp SSHHHHHHHHHHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred CChHHHHHHHHHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 3444455556665555432 234899999974 788999999999998776544
No 228
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.26 E-value=1.1 Score=37.16 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999753
No 229
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.16 E-value=0.45 Score=39.91 Aligned_cols=50 Identities=14% Similarity=-0.034 Sum_probs=29.9
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~ 121 (342)
.|.-+++.|++|+|||..++-.+...... +..+++++.- .-..|+...+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~--------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN--------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT--------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--------CCeEEEEECC-CCHHHHHHHHH
Confidence 45678999999999997544433333222 3568888754 22344444443
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.10 E-value=0.29 Score=37.21 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.|+-+++.||+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 231
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.05 E-value=0.26 Score=41.64 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
.-+++.||||+|||..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999997644
No 232
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.97 E-value=0.32 Score=36.87 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.6
Q ss_pred hcCCCEEEEcCCCCchhhHh
Q 019359 62 LKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~ 81 (342)
.+++.+++.|++|+|||..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999753
No 233
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.86 E-value=0.29 Score=37.21 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhhHhH
Q 019359 64 GRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~ 82 (342)
.+.+++.|++|+|||.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998643
No 234
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=87.81 E-value=0.35 Score=36.29 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
+..+.+.||+|+|||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999975
No 235
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.67 E-value=0.25 Score=41.21 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
.-+++.||||+|||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347789999999997643
No 236
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=87.30 E-value=3.8 Score=27.92 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCCcEEEEeC------CchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019359 262 LIKLLKEVMDGSRILIFTE------TKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 329 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 329 (342)
+.+.+++....++++||.. .-..+..+.+.|.+.|++...+.=...+..+..+.+.......+.++.-
T Consensus 7 ~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~ 80 (109)
T 3ipz_A 7 LKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIG 80 (109)
T ss_dssp HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEET
T ss_pred HHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEEC
Confidence 4455666667889999987 4788999999999999887776555555555555544444445555443
No 237
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.28 E-value=0.49 Score=40.47 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=26.5
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~ 110 (342)
.++-+++.|++|+|||..++-.+...... +.+++++....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--------g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEeCCC
Confidence 34678999999999998655444333222 44678877643
No 238
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.20 E-value=0.35 Score=37.80 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.|+-+++.||+|+|||.+
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688999999999975
No 239
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.12 E-value=2.5 Score=32.88 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=51.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..... ..+. ...+|+|+| +. ....+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~-~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DV-AARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TT-TTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Ch-hhcCCCCccC
Confidence 457999999999999988888774 67888899986654442 2232 347899999 32 3345677788
Q ss_pred cEEEE
Q 019359 176 TYLVL 180 (342)
Q Consensus 176 ~~iIv 180 (342)
+++|.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.00 E-value=0.16 Score=41.75 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=25.7
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHH-HHhhHHHH--hcCCCEEEEcCCCCchhhH
Q 019359 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPI-QAQGWPMA--LKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-Q~~~~~~~--~~~~~~l~~~~tG~GKT~~ 80 (342)
.|...|++.+-.+.+.+.+...- .+|+ ..+++..+ .-.+.+++.||.|+|||+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp --------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 35566888776565555555311 1121 12233322 1234599999999999974
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.99 E-value=0.35 Score=37.46 Aligned_cols=19 Identities=37% Similarity=0.281 Sum_probs=16.0
Q ss_pred hcCCCEEEEcCCCCchhhH
Q 019359 62 LKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~ 80 (342)
..|.-+.+.||.|+|||+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 4567788999999999975
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.97 E-value=0.53 Score=36.84 Aligned_cols=21 Identities=29% Similarity=0.045 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCCchhhHhHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~ 83 (342)
.|.-+++.||+|+|||..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456789999999999975443
No 243
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.95 E-value=0.49 Score=40.36 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=25.9
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~ 110 (342)
.|+-+++.||+|+|||..++..+...... +.+++++.-..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--------g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--------GGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--------TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECCC
Confidence 34668999999999997644433333222 45677776543
No 244
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.94 E-value=0.36 Score=37.45 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.2
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|.-+.+.||+|+|||+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHH
T ss_pred CCCCCEEEEECCCCCCHHHH
Confidence 34577789999999999975
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.90 E-value=0.24 Score=37.90 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=16.4
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+.+|..+++.||+|+|||+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34567789999999999974
No 246
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.90 E-value=0.34 Score=40.18 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999753
No 247
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.81 E-value=0.27 Score=36.83 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.4
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
-+++.|++|+|||..+
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999753
No 248
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.80 E-value=0.67 Score=35.20 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=23.3
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
+++.|++|||||.-+. -+... +..++++......-..+.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~-~la~~-----------~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-ALIGD-----------APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHH-HHHCS-----------CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHH-HHHhc-----------CCCeEEEecCCCCCHHHHHHHHH
Confidence 6899999999996422 22211 22367887765544444444444
No 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.68 E-value=0.38 Score=37.40 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.0
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..+.-+++.||+|+|||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 45677899999999999975
No 250
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.63 E-value=0.34 Score=41.02 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=17.8
Q ss_pred HHhcCCCEEEEcCCCCchhhH
Q 019359 60 MALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~ 80 (342)
.+..|+.+++.||+|+|||+.
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHH
T ss_pred hccCCCEEEEECCCCCCHHHH
Confidence 345788999999999999973
No 251
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.59 E-value=0.39 Score=36.58 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
++..+++.|++|+|||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999753
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.58 E-value=0.4 Score=40.93 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=26.3
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
|.-+++.||+|+|||..++. ++..+... +.+++++.....+
T Consensus 61 G~i~~I~GppGsGKSTLal~-la~~~~~~-------gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALH-AIAEAQKM-------GGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEeccccc
Confidence 45688999999999975443 33333321 4567887765444
No 253
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.57 E-value=2.3 Score=31.87 Aligned_cols=73 Identities=14% Similarity=0.224 Sum_probs=51.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..... ..+. ...+|+|+|. .....+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhhC
Confidence 457999999999999999888874 67888889886554432 2222 3478999993 23345567778
Q ss_pred cEEEEec
Q 019359 176 TYLVLDE 182 (342)
Q Consensus 176 ~~iIvDE 182 (342)
+++|.-+
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 8887643
No 254
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.51 E-value=1.2 Score=40.94 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=24.8
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYW 211 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 211 (342)
.+.+++++||.=.-++......+...+..+..+..++..
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 535 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456899999998777766566666665555443333333
No 255
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.47 E-value=0.36 Score=40.19 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.8
Q ss_pred CEEEEcCCCCchhhHhH
Q 019359 66 DLIGIAETGSGKTLSYL 82 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~ 82 (342)
-+++.||||+|||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 46789999999997643
No 256
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.33 E-value=0.33 Score=40.31 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
..+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999753
No 257
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.32 E-value=0.34 Score=40.82 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=29.3
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHH-hhHH-HHhcCCCEEEEcCCCCchhhHh
Q 019359 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQA-QGWP-MALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~-~~~~-~~~~~~~~l~~~~tG~GKT~~~ 81 (342)
.|...|++.+=.+...+.+...-. +|.+. +.+. .....+.+++.||+|+|||..+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 355678887655555555443100 00000 0000 0112367999999999999753
No 258
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.31 E-value=0.37 Score=39.02 Aligned_cols=16 Identities=31% Similarity=0.125 Sum_probs=13.4
Q ss_pred EEEEcCCCCchhhHhH
Q 019359 67 LIGIAETGSGKTLSYL 82 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~ 82 (342)
+++.||+|+|||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6889999999997543
No 259
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.22 E-value=3.8 Score=37.00 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=30.7
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~ 122 (342)
+..|.-+++.||+|+|||..+.. ++...... +.+++++++.... .|+...+..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~-l~g~~~~~-------G~~vi~~~~ee~~-~~l~~~~~~ 330 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSR-FVENACAN-------KERAILFAYEESR-AQLLRNAYS 330 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHH-HHHHHHTT-------TCCEEEEESSSCH-HHHHHHHHT
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH-HHHHHHhC-------CCCEEEEEEeCCH-HHHHHHHHH
Confidence 34567789999999999975333 22222211 4457777764332 355444443
No 260
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.12 E-value=0.37 Score=38.95 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 357999999999999753
No 261
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.12 E-value=1.9 Score=36.92 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=44.4
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC-----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.||++.-+..+++.+++. ++++..++|+.+...... .+..+..+|+|+|.
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~ 136 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTP 136 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECH
Confidence 568999999999999998888763 788999999887655443 44557788999994
No 262
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.09 E-value=0.42 Score=36.47 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
+..+++.|++|+|||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 55689999999999975
No 263
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.07 E-value=5.1 Score=30.63 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=41.5
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC--CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.+++|.+|++.-+..+++.+++. +.++..++|+.+.......+. ...+|+|+|.
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 568999999999999999999865 467788888876544433332 2578999994
No 264
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.98 E-value=0.36 Score=41.37 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
+.+++.||+|+|||..+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57999999999999753
No 265
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.94 E-value=1.6 Score=33.60 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=41.1
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC-----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+|+++-+..+++.+++. +..+..++|+.+..+... .+ .+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCH
Confidence 567999999999999988887653 567888888877544322 22 35678999995
No 266
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.82 E-value=0.45 Score=36.78 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.1
Q ss_pred hcCCCEEEEcCCCCchhhH
Q 019359 62 LKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~ 80 (342)
.+++-+++.||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3677789999999999974
No 267
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.76 E-value=0.33 Score=41.88 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=16.7
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..+..+++.||+|+|||+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34567799999999999975
No 268
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=85.75 E-value=0.82 Score=39.61 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+++++.||+|+|||.++
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999754
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.72 E-value=0.69 Score=38.28 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=17.5
Q ss_pred HhcCCCEEEEcCCCCchhhHhH
Q 019359 61 ALKGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~ 82 (342)
+..|.-+++.||+|+|||..+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 4457788999999999997543
No 270
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.53 E-value=0.29 Score=39.58 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=30.8
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHh--cCCCEEEEcCCCCchhhH
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~--~~~~~l~~~~tG~GKT~~ 80 (342)
..|...|+++.-.+.....++..... . .....+..+. -.+.+++.||+|+|||..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 45666788876555555555432110 0 0112333221 134599999999999975
No 271
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.50 E-value=0.7 Score=40.84 Aligned_cols=39 Identities=18% Similarity=0.026 Sum_probs=26.0
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~ 109 (342)
.|.-+++.|++|+|||..++-.+...... +.++++++.-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--------g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--------DDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--------TCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--------CCEEEEEECC
Confidence 34568899999999997544444443332 4568888654
No 272
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.46 E-value=0.41 Score=42.53 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhhHhH
Q 019359 64 GRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~ 82 (342)
++++++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3679999999999997643
No 273
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=85.35 E-value=0.66 Score=32.73 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=34.9
Q ss_pred HHHHhhcCCCcEEEEeCCchh--HHHHHHHHHhCCCCcEeecCCCC
Q 019359 264 KLLKEVMDGSRILIFTETKKG--CDQVTRQLRMDGWPALSIHGDKN 307 (342)
Q Consensus 264 ~~l~~~~~~~~~lvf~~~~~~--~~~l~~~L~~~~~~~~~~~~~~~ 307 (342)
..+.....+++++|||.+-.. +...+..|++.|+++..+.|++.
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 344444457789999998877 88999999999999888888764
No 274
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=85.34 E-value=4.8 Score=27.59 Aligned_cols=68 Identities=15% Similarity=0.031 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCCcEEEEe------CCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019359 262 LIKLLKEVMDGSRILIFT------ETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 329 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~------~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 329 (342)
+.+.+++....++++||. ++-..|..+.+.|.+.|++...+.-..++..+..+.+.-.....+.++.-
T Consensus 5 ~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~ 78 (111)
T 3zyw_A 5 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVS 78 (111)
T ss_dssp HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEET
T ss_pred HHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEEC
Confidence 345566666788999998 46778999999999999887776555555555554443333345555443
No 275
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.32 E-value=0.33 Score=36.92 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
.+..+++.|++|+|||+.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456889999999999753
No 276
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.27 E-value=2.1 Score=32.56 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=43.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh---HHhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+.... ...+. ....|+|+|. . ...++++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----V-AARGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----h-hhcCCCcccC
Confidence 567999999999999988888873 6788888887554332 22222 3478999993 2 2234566778
Q ss_pred cEEEE
Q 019359 176 TYLVL 180 (342)
Q Consensus 176 ~~iIv 180 (342)
+++|.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87775
No 277
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.26 E-value=0.56 Score=36.92 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=16.2
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45788899999999999974
No 278
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.22 E-value=0.56 Score=39.11 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
...++++.||+|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457899999999999975
No 279
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.18 E-value=0.51 Score=40.66 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
..++++.||+|+|||.++
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999753
No 280
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.14 E-value=1.5 Score=34.48 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=38.5
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHh---CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
.+.++||.+++++-+.++++.+++ .++.+..++|+.+...+.. .+. ...+|+|+|.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS-KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH-SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc-CCCCEEEECH
Confidence 367899999999999999998886 3677888888776443332 232 3478999994
No 281
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.09 E-value=0.76 Score=38.32 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=14.3
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
-+++.+|+|+|||++...
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 467899999999976443
No 282
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.02 E-value=2.4 Score=32.58 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=19.0
Q ss_pred CcEEEeChHHHHHHHhccccCCCCccEEEEeccch
Q 019359 151 VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (342)
Q Consensus 151 ~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (342)
.+++-+..+.+.+.+.... ..+|++|+|=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l~---~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKDL---ADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHHT---TTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHhc---CCCCEEEEECCCC
Confidence 3455555556655554422 3489999996543
No 283
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=84.94 E-value=1.3 Score=30.24 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=35.5
Q ss_pred HHHHhhcCCCcEEEEeCCchhHHHHHHHHHhCCCC-cEeecCCCCH
Q 019359 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKNQ 308 (342)
Q Consensus 264 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 308 (342)
..+.+...+++++|||.+-..+...+..|.+.|+. +..+.|++..
T Consensus 50 ~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 50 AFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp HHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 33444445788999999988899999999999985 7888888653
No 284
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.88 E-value=0.5 Score=35.28 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
+++++.|++|+|||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 678999999999998643
No 285
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.88 E-value=3.5 Score=36.97 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=22.4
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p 108 (342)
.+++.+++|+|||.++...+ ..+... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~~-------G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQRK-------GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHHT-------TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHhC-------CCeEEEEec
Confidence 47788999999998644433 333321 455777665
No 286
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.71 E-value=0.48 Score=36.29 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.0
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
+.++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999974
No 287
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.64 E-value=0.74 Score=39.49 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=25.6
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHH
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~ 111 (342)
++-+++.+++|+|||..++-.+. .+... +.+++|+.....
T Consensus 74 G~li~I~G~pGsGKTtlal~la~-~~~~~-------g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVA-QAQKA-------GGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH-HHHHT-------TCCEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHH-HHHHC-------CCeEEEEECCCC
Confidence 45688999999999976444333 33221 446777766543
No 288
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=84.62 E-value=0.55 Score=36.39 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=16.8
Q ss_pred CEEEEcCCCCchhhHhHHHHHHh
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVH 88 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~ 88 (342)
-.++.|++|+|||..+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 46899999999998654444343
No 289
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=84.62 E-value=0.3 Score=36.81 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=15.7
Q ss_pred hcCCCEEEEcCCCCchhhH
Q 019359 62 LKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~ 80 (342)
..|.-+.+.||.|+|||+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp ESSEEEEEECCTTSCHHHH
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 3566788999999999974
No 290
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.59 E-value=1.3 Score=39.68 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.9
Q ss_pred hcCCCEEEEcCCCCchhhHh
Q 019359 62 LKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~ 81 (342)
.++.++++.|+||+|||...
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHH
T ss_pred ccCceEEEECCCCCCHHHHH
Confidence 35678999999999999754
No 291
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.54 E-value=0.52 Score=35.19 Aligned_cols=16 Identities=13% Similarity=-0.230 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.|++|+|||+++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999753
No 292
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.49 E-value=0.5 Score=39.65 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.3
Q ss_pred CEEEEcCCCCchhhHhH
Q 019359 66 DLIGIAETGSGKTLSYL 82 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~ 82 (342)
.+++.||||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997644
No 293
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.44 E-value=0.88 Score=38.90 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+.+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999753
No 294
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=84.24 E-value=0.88 Score=38.24 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.2
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
-+.+.++.|+|||++...
T Consensus 107 vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999986443
No 295
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=84.24 E-value=0.43 Score=35.97 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=13.4
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
-+++.|++|+|||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3788999999999753
No 296
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.17 E-value=0.31 Score=39.67 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 457999999999999753
No 297
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.80 E-value=0.66 Score=35.51 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=16.9
Q ss_pred HhcCCCEEEEcCCCCchhhHh
Q 019359 61 ALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~ 81 (342)
+.++..+++.|++|+|||+.+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHH
Confidence 345667899999999999853
No 298
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=83.77 E-value=5.4 Score=26.83 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=44.0
Q ss_pred HHHHhhcCCCcEEEEe------CCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEE
Q 019359 264 KLLKEVMDGSRILIFT------ETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA 328 (342)
Q Consensus 264 ~~l~~~~~~~~~lvf~------~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 328 (342)
+.+++....++++||. +.-..+..+...|.+.++....+.-+..+..+..+.+.+.....+.++.
T Consensus 8 ~~~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i 78 (105)
T 2yan_A 8 ERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYV 78 (105)
T ss_dssp HHHHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred HHHHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 3444444566788887 4567899999999998888777766666655555555555445555543
No 299
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.68 E-value=0.7 Score=35.23 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.6
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
+-+.+.||.|+|||++
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999975
No 300
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.60 E-value=1.8 Score=43.92 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=24.5
Q ss_pred CCccEEEEeccchhhcCCChHHHHHHHhhcCCCccEE
Q 019359 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTL 209 (342)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 209 (342)
.+-+++|+||+=.-++......+...+..+..++-+|
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~i 607 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTI 607 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEE
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 4578999999988777766666666555443333333
No 301
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=83.49 E-value=0.58 Score=36.13 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
++..+++.|+.|+|||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456789999999999975
No 302
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=83.48 E-value=0.78 Score=36.99 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
+++.+++.|++|+|||.++
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4889999999999999753
No 303
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.43 E-value=0.39 Score=39.45 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=30.5
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHHHh--cCCCEEEEcCCCCchhhH
Q 019359 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~Q~~~~~~~~--~~~~~l~~~~tG~GKT~~ 80 (342)
.|...|+++.-.+...+.+...... .. ....+..+. -.+.+++.||+|+|||..
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 3566688876666665555542110 00 012232221 124599999999999975
No 304
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.42 E-value=1.2 Score=37.55 Aligned_cols=58 Identities=16% Similarity=-0.026 Sum_probs=31.6
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH-HHHHHHHHHHh
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL-AVQIQEEALKF 123 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l-~~q~~~~~~~~ 123 (342)
|.-+++.||+|+|||..++..+...... ....+.+.+++++.-...+ ..++.+.++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~--~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLP--PEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSC--GGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcc--cccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568899999999997644433332111 0011114567887665432 34444455554
No 305
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=83.37 E-value=10 Score=34.35 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=55.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhh-cCCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+..... .++.+..++++....... ..+ ....+|+|+|. . ....+++..+
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----h-hhcCCCcccC
Confidence 66899999999999999998887533 267788888886654432 222 23578999993 3 3446678889
Q ss_pred cEEEEecc
Q 019359 176 TYLVLDEA 183 (342)
Q Consensus 176 ~~iIvDE~ 183 (342)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 98885443
No 306
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=83.35 E-value=3.3 Score=26.60 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=29.7
Q ss_pred cCCCcEEEEeCCchhHHHHHHHHHhCCCC-cEeecCCCC
Q 019359 270 MDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKN 307 (342)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 307 (342)
..+++++++|.+-..+...+..|.+.|+. +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 34678999999988899999999999985 5555 7654
No 307
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.27 E-value=0.69 Score=35.74 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.+..+++.||.|+|||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788999999999975
No 308
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=83.26 E-value=3.5 Score=36.31 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=46.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEE
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (342)
+.++||+||++.-+..+.+.++.. ++.+..++|+... .....+.. ..+|+|+|. . ....+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~-----v-~e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REYPTIKQKKPDFILATD-----I-AEMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS-----S-TTCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHHhhhcCCCceEEEECC-----h-hheeeccC-ceEE
Confidence 467999999999999999998884 6788888884322 23333333 478999993 3 33455677 8887
Q ss_pred E
Q 019359 179 V 179 (342)
Q Consensus 179 I 179 (342)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 309
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=83.26 E-value=0.57 Score=35.19 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
+..+++.|+.|+|||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999753
No 310
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=83.18 E-value=2.6 Score=33.72 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=40.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+|+++-+.++++.+++. ++.+..++|+.+....... . ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECH
Confidence 468999999999999998887653 5677788888765443332 2 34678999994
No 311
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=83.15 E-value=4 Score=38.87 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=45.7
Q ss_pred HHHHhhcCCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 264 ~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
-.+.....+.+++|.++|++-|..+++.+.. .|+.+..+.|+++...+.... ..+|+|+|+
T Consensus 107 P~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 107 PAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 3333334578899999999999888777654 589999999999876554332 378999995
No 312
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.00 E-value=0.63 Score=39.34 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhhHhH
Q 019359 66 DLIGIAETGSGKTLSYL 82 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~ 82 (342)
-+++.||||+|||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999997643
No 313
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.94 E-value=4.6 Score=31.91 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=35.4
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+|+++-+..+++.+++. +..+..++|+.+.. ...+.+..+..+|+|+|+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTP 157 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECH
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECH
Confidence 568999999999999999888754 45667777765432 233445567789999993
No 314
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=82.89 E-value=0.9 Score=39.96 Aligned_cols=34 Identities=24% Similarity=0.128 Sum_probs=22.1
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 107 (342)
.+++.|++|+|||.++...+...... +.+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~--------G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR--------GLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH--------HCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEe
Confidence 68899999999998654433332222 45566665
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.80 E-value=0.39 Score=36.70 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
+..+++.|++|+|||+.+
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999753
No 316
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=82.77 E-value=0.74 Score=35.79 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=16.3
Q ss_pred HHhcCCCEEEEcCCCCchhhH
Q 019359 60 MALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~ 80 (342)
.+..|+-+.+.||.|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 567788899999999999974
No 317
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=82.65 E-value=11 Score=28.14 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=55.5
Q ss_pred EEechhhHHHHHHHHHHhhc-CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019359 251 EVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 329 (342)
Q Consensus 251 ~~~~~~~~~~~l~~~l~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 329 (342)
...+..+....+.+.+.... ..+.+-|.|++...+..+.+.|.+.|+++..+.++.. ..+..|.|.|
T Consensus 39 ~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t 106 (174)
T 3dmn_A 39 VTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVP 106 (174)
T ss_dssp EESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEE
T ss_pred EeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEE
Confidence 33344555556666665421 2567999999999999999999999998877765432 1234688999
Q ss_pred cccccCCCCCCC
Q 019359 330 DVAARGLGRITV 341 (342)
Q Consensus 330 ~~~~~Gidip~v 341 (342)
--.+.|+.++.|
T Consensus 107 ~~~~KGlEf~~V 118 (174)
T 3dmn_A 107 SFLAKGLEFDAV 118 (174)
T ss_dssp GGGCTTCCEEEE
T ss_pred ccccCCcCCCEE
Confidence 888888877654
No 318
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.63 E-value=1.2 Score=37.41 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=31.4
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcC------CCccCC-C-CceEEEEcCcHHH-HHHHHHHHHHh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQ------PRLVQG-E-GPIVLVLAPTREL-AVQIQEEALKF 123 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~------~~~~~~-~-~~~vlil~p~~~l-~~q~~~~~~~~ 123 (342)
.-+++.|++|+|||..++-.+....... .....+ . ..+++++.-...+ ..++.+.++.+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 5578999999999976444333321110 000000 0 1578888765432 44555555554
No 319
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=82.63 E-value=0.84 Score=30.69 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=32.7
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCC
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (342)
.++++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4678999999999999999999999998888888764
No 320
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=82.56 E-value=0.47 Score=36.28 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
+..+++.|++|+|||+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999753
No 321
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=82.51 E-value=0.85 Score=38.91 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=17.1
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
++.++.|.+ ++.-|+||+|||.++
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 344456766 455589999999874
No 322
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=82.37 E-value=1.4 Score=36.74 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
+.-+.+.||.|+|||+.
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45678899999999975
No 323
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=82.32 E-value=0.53 Score=37.33 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=12.7
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|.-+.+.||+|+|||.+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 44677788999999999975
No 324
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.26 E-value=0.75 Score=38.89 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
+.+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999975
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.24 E-value=0.66 Score=35.86 Aligned_cols=20 Identities=30% Similarity=0.234 Sum_probs=16.1
Q ss_pred hcCCCEEEEcCCCCchhhHh
Q 019359 62 LKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~ 81 (342)
.++.-+.+.||+|+|||..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34667889999999999753
No 326
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.17 E-value=0.63 Score=38.71 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999753
No 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=82.11 E-value=1.5 Score=32.95 Aligned_cols=24 Identities=17% Similarity=-0.050 Sum_probs=16.6
Q ss_pred CEEEEcCCCCchhhHhHHHHHHhhh
Q 019359 66 DLIGIAETGSGKTLSYLLPAFVHVS 90 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~~~~~~ 90 (342)
-+.+.|+.|+|||.. +..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 467889999999974 444444443
No 328
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.09 E-value=1.3 Score=33.63 Aligned_cols=19 Identities=37% Similarity=0.232 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
++..+++.|++|+|||..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456889999999999753
No 329
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=81.97 E-value=2.8 Score=45.54 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=31.6
Q ss_pred CHHHHHHHHHcCCCCCcHHHHh----hHHHHhcCCCEEEEcCCCCchhhHhH
Q 019359 35 PDYCLEVIAKLGFVEPTPIQAQ----GWPMALKGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 35 ~~~~~~~l~~~~~~~l~~~Q~~----~~~~~~~~~~~l~~~~tG~GKT~~~~ 82 (342)
.+.+.+.....++ .+.+.+.. ..+.+..++.+++.||||+|||.++-
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 3445566666777 55555432 33445567889999999999998643
No 330
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=81.97 E-value=0.89 Score=30.87 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=32.5
Q ss_pred cCCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCC
Q 019359 270 MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (342)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (342)
..+++++++|.+-..+...+..|.+.|+++..+.|++.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 34678999999988899999999999998888877653
No 331
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.90 E-value=1 Score=35.33 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=35.6
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+..+... .+. +.+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR--DAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC--CCCEEEECH
Confidence 3568999999999999998887753 677888888766443322 222 378999994
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=81.74 E-value=0.88 Score=34.16 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=14.4
Q ss_pred CEEEEcCCCCchhhHhH
Q 019359 66 DLIGIAETGSGKTLSYL 82 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~ 82 (342)
.+++.|++|+|||..+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68999999999997543
No 333
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=81.66 E-value=0.92 Score=30.66 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCC
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (342)
.++++++||.+-..+...+..|.+.|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4678999999998999999999999998888888754
No 334
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=81.60 E-value=15 Score=33.61 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=55.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+..... .++.+..++|+.+..... ..+. ...+|+|+|. . ....+++..+
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~-~~~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----h-hhcCCCcccC
Confidence 66899999999999999998887533 267888889886654432 2222 3578999993 3 3446678889
Q ss_pred cEEEEecc
Q 019359 176 TYLVLDEA 183 (342)
Q Consensus 176 ~~iIvDE~ 183 (342)
++||.-..
T Consensus 361 ~~VI~~~~ 368 (579)
T 3sqw_A 361 HEVLQIGV 368 (579)
T ss_dssp CEEEEESC
T ss_pred CEEEEcCC
Confidence 98886544
No 335
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=81.44 E-value=0.93 Score=34.74 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=16.7
Q ss_pred HhcCCCEEEEcCCCCchhhHh
Q 019359 61 ALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~ 81 (342)
+..+..+++.|++|+|||..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 344567899999999999753
No 336
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=81.41 E-value=5.8 Score=37.84 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=44.3
Q ss_pred hcCCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 269 VMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 269 ~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
...+..++|.|++.+-|...++.+.. .|+.+..+.|+++..++.... ..+|+++|+
T Consensus 121 aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 121 ALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp HTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 34578899999999999988877654 589999999999876655432 368999995
No 337
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=81.33 E-value=0.71 Score=39.98 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.4
Q ss_pred EEEEcCCCCchhhHhH
Q 019359 67 LIGIAETGSGKTLSYL 82 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~ 82 (342)
+++.||||+|||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6789999999997643
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.31 E-value=0.63 Score=38.44 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.6
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
.-+++.||+|+|||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3478999999999975
No 339
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=81.29 E-value=0.9 Score=35.79 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=15.9
Q ss_pred HHhcCCCEEEEcCCCCchhhH
Q 019359 60 MALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~ 80 (342)
.+..|+-+.+.||.|+|||..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 345677889999999999974
No 340
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=81.28 E-value=0.71 Score=35.83 Aligned_cols=19 Identities=32% Similarity=0.207 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
++..+++.|++|+|||+.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556889999999999753
No 341
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=81.25 E-value=3.7 Score=40.64 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=48.7
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHh----CCC----CcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRM----DGW----PALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
.+.++||.+|+++-+.++++.+++ .++ .+..++|+.+..++....+.+.. .+|+|+|+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcH
Confidence 467899999999999999888874 356 78899999998887777777766 89999995
No 342
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=81.22 E-value=5.7 Score=32.00 Aligned_cols=55 Identities=25% Similarity=0.264 Sum_probs=41.3
Q ss_pred CCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+|+++-+.++++.+++ .+..+..+.|+.+...... .+..+ .+|+|+|+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp 184 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATP 184 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcH
Confidence 67899999999999999888876 3567788888877544333 33333 78999993
No 343
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=81.10 E-value=6.1 Score=34.10 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=51.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+.+. ++.+..++|+.+..... ..+. ...+|+|+| +.+. ..+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-TTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-cCCCcccC
Confidence 678999999999999998888873 67888899887654432 2222 357899999 3333 35667778
Q ss_pred cEEEE
Q 019359 176 TYLVL 180 (342)
Q Consensus 176 ~~iIv 180 (342)
+++|.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88775
No 344
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.10 E-value=1.1 Score=37.96 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=30.8
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH-HHHHHHHHHHh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL-AVQIQEEALKF 123 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l-~~q~~~~~~~~ 123 (342)
.-+++.||+|+|||..++..+...... ....+.+.+++++.....+ ..++.+.+..+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~--~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLP--GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSC--BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcc--cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 457899999999997644433332111 1011125577887765431 23444445443
No 345
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=81.04 E-value=1.4 Score=36.60 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.-+.+.||+|+|||+..
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45779999999999753
No 346
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=80.88 E-value=1.1 Score=34.01 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchhhHhH
Q 019359 65 RDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~ 82 (342)
..+++.|++|+|||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458899999999998543
No 347
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.85 E-value=1.1 Score=37.55 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=17.5
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 444557766 556689999999874
No 348
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=80.84 E-value=0.88 Score=35.12 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
..+++.|+.|+|||+.+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999753
No 349
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.84 E-value=0.66 Score=39.34 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999753
No 350
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=80.44 E-value=2.1 Score=34.69 Aligned_cols=53 Identities=15% Similarity=0.055 Sum_probs=32.3
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhcC
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~~~~~~ 125 (342)
|..+++.+++|+|||..++--+.+.+.. +.++++++-.... .++.+.++.++.
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~--------Ge~~~~~~~~e~~-~~l~~~~~~~G~ 73 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKS--------DNLVGMFSISYPL-QLIIRILSRFGV 73 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHT--------TCEEEEEECSSCH-HHHHHHHHHTTC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHC--------CCcEEEEEEeCCH-HHHHHHHHHcCC
Confidence 4567888788888884333333333333 5678888765444 566777777643
No 351
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=80.31 E-value=0.87 Score=35.49 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=20.6
Q ss_pred cHHHHhhHHHHhcCCCEEEEcCCCCchhhHh
Q 019359 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 51 ~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~~ 81 (342)
++.++... .+..+..+++.|++|+|||..+
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 34444443 3456677889999999999753
No 352
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=80.23 E-value=0.96 Score=34.45 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.4
Q ss_pred CCEEEEcCCCCchhhH
Q 019359 65 RDLIGIAETGSGKTLS 80 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~ 80 (342)
.-+++.||+|+|||+.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3467899999999975
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.14 E-value=1 Score=35.32 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
+..+++.|++|+|||+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999753
No 354
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.11 E-value=8 Score=31.98 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=52.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHH---hhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.|+++.-+..+.+.+.. .++.+..++|+.+...... .+. ...+|+|+| +. ....+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~v-a~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DV-AARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----ST-TTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----ch-hhcCccccce
Confidence 45699999999999888888776 3788889999876554432 222 347899999 33 3345677888
Q ss_pred cEEEEec
Q 019359 176 TYLVLDE 182 (342)
Q Consensus 176 ~~iIvDE 182 (342)
++||.=+
T Consensus 98 ~~VI~~d 104 (300)
T 3i32_A 98 DLVVHYR 104 (300)
T ss_dssp SEEEESS
T ss_pred eEEEEcC
Confidence 8887533
No 355
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=80.11 E-value=1.2 Score=37.86 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=17.3
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 344556766 455689999999874
No 356
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=80.08 E-value=3.6 Score=32.04 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=38.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC--------CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD--------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+++++-+.++++.+++. ++.+..++|+.+..+.. +.+ .+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCH
Confidence 568999999999999998887653 56777888876533221 111 24578999994
No 357
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=79.99 E-value=1.3 Score=39.46 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
..++++.||+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 368999999999999753
No 358
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=79.94 E-value=0.36 Score=37.57 Aligned_cols=22 Identities=32% Similarity=0.063 Sum_probs=16.8
Q ss_pred HHHhcCCCEEEEcCCCCchhhH
Q 019359 59 PMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 59 ~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
+.+..+.-+.+.|++|+|||+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHH
Confidence 3444556688999999999974
No 359
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=79.92 E-value=0.91 Score=37.78 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=17.0
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+.+|+.+.+.||+|+|||..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHH
T ss_pred ecCCCEEEEECCCCCcHHHH
Confidence 45678899999999999964
No 360
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=79.87 E-value=0.68 Score=34.97 Aligned_cols=19 Identities=21% Similarity=0.094 Sum_probs=11.0
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
++..+++.|++|+|||..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456889999999999853
No 361
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.65 E-value=1.3 Score=37.60 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=17.1
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 334556765 455689999999874
No 362
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=79.57 E-value=1.2 Score=33.29 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
..+++.|++|+|||..+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999753
No 363
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=79.56 E-value=1.3 Score=37.23 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred hHHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 57 ~~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
++..++.|.+ ++.-|+||+|||.++
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5566677876 455689999999874
No 364
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=79.55 E-value=1 Score=35.15 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.||+|+|||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999753
No 365
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.55 E-value=0.97 Score=43.04 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=31.5
Q ss_pred CccccccccCCCCHHHHHHHHHc-CCCCCcHHHHhhHHHHhcCCCEEEEcCCCCchhhH
Q 019359 23 PRPIRIFQEANFPDYCLEVIAKL-GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~l~~~Q~~~~~~~~~~~~~l~~~~tG~GKT~~ 80 (342)
..|.-.|+..+--+...+.+... -+...+|.+..-+ -+...+.+|+.||+|+|||+.
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHH
Confidence 34556688776666666655542 1111111111111 012346799999999999975
No 366
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=79.52 E-value=2.9 Score=37.99 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=19.5
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
+..++++.|.||+|||...-..++..+
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999976444344333
No 367
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=79.51 E-value=0.92 Score=35.28 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.+.-+.+.||+|+|||+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678999999999974
No 368
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=79.39 E-value=0.97 Score=35.30 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.||+|+|||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999753
No 369
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=79.36 E-value=4.9 Score=35.23 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=42.4
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+|+++-+.++++.+++. ++++..++|+.+.......+ ....+|+|+|.
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp 187 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATP 187 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEECh
Confidence 568999999999999999888753 56788899988865543332 24578999993
No 370
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=79.27 E-value=0.71 Score=36.35 Aligned_cols=20 Identities=30% Similarity=0.047 Sum_probs=16.2
Q ss_pred hcCCCEEEEcCCCCchhhHh
Q 019359 62 LKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~ 81 (342)
..|+-+.+.||.|+|||..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 34567899999999999753
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=79.26 E-value=1.2 Score=35.03 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
...+++.|++|+|||..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999753
No 372
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=79.24 E-value=1.3 Score=38.12 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=16.2
Q ss_pred HHhcCCC--EEEEcCCCCchhhHh
Q 019359 60 MALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 60 ~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
.++.|.+ ++.-|+||+|||.++
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 3456766 455689999999874
No 373
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=79.23 E-value=5 Score=34.40 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=19.2
Q ss_pred EEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc
Q 019359 69 GIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (342)
Q Consensus 69 ~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 107 (342)
..+--|.|||.+++-.+...... +.+++++=
T Consensus 149 ~s~KGGvGKTT~a~nLA~~La~~--------g~rVlliD 179 (373)
T 3fkq_A 149 TSPCGGVGTSTVAAACAIAHANM--------GKKVFYLN 179 (373)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHH--------TCCEEEEE
T ss_pred ECCCCCChHHHHHHHHHHHHHhC--------CCCEEEEE
Confidence 33578999998765544443332 55677764
No 374
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=79.23 E-value=1.2 Score=37.65 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=17.0
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 334456766 456689999999874
No 375
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=79.22 E-value=0.99 Score=34.32 Aligned_cols=15 Identities=27% Similarity=0.100 Sum_probs=13.0
Q ss_pred CEEEEcCCCCchhhH
Q 019359 66 DLIGIAETGSGKTLS 80 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~ 80 (342)
.+++.|++|+|||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 376
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=79.17 E-value=1.3 Score=37.97 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=17.3
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 444567766 455689999999874
No 377
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=79.10 E-value=1.4 Score=37.58 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=16.7
Q ss_pred HHHhcCCC--EEEEcCCCCchhhHh
Q 019359 59 PMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 59 ~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
..++.|.+ ++.-|+||+|||.++
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34456766 455689999999874
No 378
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=79.07 E-value=1.3 Score=37.60 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=17.3
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 444556765 455689999999874
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.06 E-value=1 Score=35.51 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
...+++.|++|+|||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 380
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=78.99 E-value=1.4 Score=37.72 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=17.2
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 444557766 455689999999874
No 381
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=78.97 E-value=2 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
-+++.++.|+|||.++..
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467789999999976444
No 382
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=78.95 E-value=1.6 Score=28.87 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=31.1
Q ss_pred CcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCC
Q 019359 273 SRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (342)
Q Consensus 273 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (342)
+++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999988888888765
No 383
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.82 E-value=7.9 Score=33.96 Aligned_cols=74 Identities=22% Similarity=0.225 Sum_probs=50.3
Q ss_pred EechhhHHHHHHHHHHhh--cCCCcEEEEeCCchhHHHHHHHHHhC-CC---CcEeecCCCCHHHHHHHHHHHhcCCCCE
Q 019359 252 VVTEAEKYNRLIKLLKEV--MDGSRILIFTETKKGCDQVTRQLRMD-GW---PALSIHGDKNQSERDWVLAEFRSGRSPI 325 (342)
Q Consensus 252 ~~~~~~~~~~l~~~l~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~v 325 (342)
.....+|--.....+... ..+.++||.||++.-+..+.+.+.+. +. .+..++|+....++..... +.+|
T Consensus 30 ~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~i 104 (494)
T 1wp9_A 30 LPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKV 104 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSE
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCE
Confidence 333344443333333332 24789999999999999999988875 54 7889999988776544332 4579
Q ss_pred EEEec
Q 019359 326 MTATD 330 (342)
Q Consensus 326 lv~t~ 330 (342)
+|+|.
T Consensus 105 vv~T~ 109 (494)
T 1wp9_A 105 IVATP 109 (494)
T ss_dssp EEECH
T ss_pred EEecH
Confidence 99983
No 384
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=78.76 E-value=1.1 Score=35.14 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
..+.+.||+|+|||+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999753
No 385
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.76 E-value=1.4 Score=38.25 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=18.3
Q ss_pred hHHHHhcCCCE--EEEcCCCCchhhHh
Q 019359 57 GWPMALKGRDL--IGIAETGSGKTLSY 81 (342)
Q Consensus 57 ~~~~~~~~~~~--l~~~~tG~GKT~~~ 81 (342)
++..++.|.++ +.-|+||+|||.++
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 45555678764 55589999999984
No 386
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=78.76 E-value=1.5 Score=37.51 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=17.2
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 344556766 455689999999874
No 387
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=78.72 E-value=1.1 Score=39.33 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999753
No 388
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=78.64 E-value=1.4 Score=37.61 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=17.0
Q ss_pred HHHHhcCCCE--EEEcCCCCchhhHh
Q 019359 58 WPMALKGRDL--IGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~~--l~~~~tG~GKT~~~ 81 (342)
++.++.|.++ +.-|+||+|||.++
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 3444567664 55589999999874
No 389
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=78.61 E-value=4.5 Score=34.58 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=41.7
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 329 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 329 (342)
.+.++||.||++.-+.++++.+.+ .++.+..++|+.+..+....+. ..+|+|+|
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T 145 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGT 145 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEEC
Confidence 356899999999999998888765 3678889999888655544433 46799998
No 390
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=78.60 E-value=1.4 Score=37.59 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=17.4
Q ss_pred HHHHhcCCCE--EEEcCCCCchhhHh
Q 019359 58 WPMALKGRDL--IGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~~--l~~~~tG~GKT~~~ 81 (342)
+..++.|.+. +.-|+||+|||.++
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4445577664 55689999999874
No 391
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=78.60 E-value=1.7 Score=40.18 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.1
Q ss_pred HHhcCCCEEEEcCCCCchhhH
Q 019359 60 MALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 60 ~~~~~~~~l~~~~tG~GKT~~ 80 (342)
.+..++.+++.||+|+|||..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 456788999999999999975
No 392
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=78.54 E-value=2.3 Score=28.84 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=32.2
Q ss_pred cCCCcEEEEeCCchhHHHHHHHHHhCCCC-cEeecCCCC
Q 019359 270 MDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKN 307 (342)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 307 (342)
..+++++|||.+-..+...+..|.+.|+. +..+.|++.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 34678999999988899999999999985 888888764
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=78.54 E-value=1 Score=33.91 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
+|..+.+.|++|+|||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355688999999999975
No 394
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=78.53 E-value=1.3 Score=38.37 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=17.2
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344556765 455689999999874
No 395
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=78.45 E-value=1 Score=34.93 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
++..+++.|+.|+|||+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999753
No 396
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=78.45 E-value=1.4 Score=33.75 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCCchhhH
Q 019359 64 GRDLIGIAETGSGKTLS 80 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~ 80 (342)
|+.+.+.||.|+|||..
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 35678999999999975
No 397
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=78.34 E-value=3.5 Score=37.26 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=41.5
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||++|++.-+..+.+.+++. ++.+..++|+.+...+...+. +..+|+|+|.
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 110 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTP 110 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECH
Confidence 678999999999999888887764 889999999886554322221 2367999983
No 398
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=78.26 E-value=1.3 Score=37.87 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=17.8
Q ss_pred hHHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 57 ~~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
++..++.|.+ ++.-|+||+|||.++
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3445557766 455689999999874
No 399
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=78.24 E-value=1.6 Score=37.05 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=17.3
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 444556766 455689999999874
No 400
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=78.21 E-value=0.86 Score=36.35 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=16.2
Q ss_pred HhcCCCEEEEcCCCCchhh
Q 019359 61 ALKGRDLIGIAETGSGKTL 79 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~ 79 (342)
+..|+-+.+.||.|+|||+
T Consensus 28 i~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3467788999999999996
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=78.16 E-value=1.3 Score=35.18 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCCchhhHhH
Q 019359 63 KGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~ 82 (342)
.+..+++.|++|+|||..+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578999999999997543
No 402
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=78.11 E-value=1.3 Score=34.08 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
..+++.|++|+|||..+
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999753
No 403
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=78.09 E-value=1.1 Score=33.98 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.|++|+|||..+
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999853
No 404
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.08 E-value=1.2 Score=33.68 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=12.9
Q ss_pred CEEEEcCCCCchhhH
Q 019359 66 DLIGIAETGSGKTLS 80 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~ 80 (342)
.+.+.||.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=78.06 E-value=1.8 Score=36.27 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=21.3
Q ss_pred CccEEEEeccchhhcCCChHHHHHHHhhcCCCccEEEEEe
Q 019359 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (342)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 213 (342)
..+.++++..+.+ +.. ..+...+..+.+...++..|-
T Consensus 151 ~ad~ill~k~dl~-de~--~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 151 YADRILLTKTDVA-GEA--EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp TCSEEEEECTTTC-SCT--HHHHHHHHHHCSSSCEEECCS
T ss_pred hCCEEEEECcccC-CHH--HHHHHHHHHhCCCCeEEEecc
Confidence 3577888888765 222 455555555555555555543
No 406
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=78.05 E-value=1.2 Score=34.41 Aligned_cols=16 Identities=31% Similarity=0.073 Sum_probs=13.2
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+.+.||.|+|||+++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999753
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=77.87 E-value=2 Score=36.71 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.-+.+.||+|+|||++.
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 34779999999999753
No 408
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=77.83 E-value=7.9 Score=37.32 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=47.1
Q ss_pred HHHHHhhcCCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 263 ~~~l~~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+-.+.....+.+++|.++|..-|...++.+.. .|+.+..+.|+++..++.... ..+|+++|+
T Consensus 111 Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 111 LAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 33333444678899999999988887776653 589999999999977665544 378999995
No 409
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=77.83 E-value=1.2 Score=34.56 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCchhhHh
Q 019359 63 KGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~ 81 (342)
++..+++.|+.|+|||+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999753
No 410
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=77.83 E-value=1.4 Score=37.84 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=17.1
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 334556766 455689999999874
No 411
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=77.82 E-value=1.5 Score=37.28 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=18.6
Q ss_pred hHHHHhcCCCE--EEEcCCCCchhhHh
Q 019359 57 GWPMALKGRDL--IGIAETGSGKTLSY 81 (342)
Q Consensus 57 ~~~~~~~~~~~--l~~~~tG~GKT~~~ 81 (342)
++..++.|.++ +.-|+||+|||.++
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 45566678764 55689999999884
No 412
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=77.78 E-value=1.3 Score=37.64 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=18.0
Q ss_pred hHHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 57 ~~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
++..++.|.+ ++.-|+||+|||.++
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4445567766 455689999999874
No 413
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=77.72 E-value=11 Score=26.12 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCCcEEEEeCC------chhHHHHHHHHHhCCCC---cEeecCCCCHHHHHHHHHHHhcCCCCEEEE
Q 019359 262 LIKLLKEVMDGSRILIFTET------KKGCDQVTRQLRMDGWP---ALSIHGDKNQSERDWVLAEFRSGRSPIMTA 328 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~~~------~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 328 (342)
+.+.+++....++++||..+ -..+..+.+.|.+.|+. ...+.-..++..+..+.+.......+.++.
T Consensus 5 ~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI 80 (121)
T 3gx8_A 5 IRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYV 80 (121)
T ss_dssp HHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEE
T ss_pred HHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 34455566667899999874 77899999999998887 445544555555555444433334444443
No 414
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=77.70 E-value=5.4 Score=38.19 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=39.2
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
++++||.||++.-+..+.+.+++. ++++..++|+.+...+...+. +..+|+|+|.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp 354 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEch
Confidence 678999999999999988887764 889999999886554332221 3578999993
No 415
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=77.70 E-value=1.2 Score=34.13 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=13.0
Q ss_pred CEEEEcCCCCchhhH
Q 019359 66 DLIGIAETGSGKTLS 80 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~ 80 (342)
.+++.|++|+|||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 368899999999975
No 416
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=77.61 E-value=7.8 Score=37.22 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=44.6
Q ss_pred hhcCCCcEEEEeCCchhHHHHHHHHHh----CCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 268 EVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 268 ~~~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
....+.+++|.+++..-|...++.+.. .|+.+.++.|+++..++.... ..+|+++|+
T Consensus 148 ~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 148 NALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 334678899999999999887777654 589999999999876665443 368999995
No 417
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=77.53 E-value=1.3 Score=35.40 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
...+++.||.|+|||+.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346899999999999753
No 418
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=77.49 E-value=0.95 Score=37.92 Aligned_cols=22 Identities=23% Similarity=0.040 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCCchhhHhHHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLP 84 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~ 84 (342)
.+..+++.||+|+|||..++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4456799999999999764443
No 419
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=77.42 E-value=2 Score=35.60 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999753
No 420
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.41 E-value=10 Score=32.53 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=52.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+... +..+..++|+.+..... ..+. ...+|+|+|. . ...++++..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCccCC
Confidence 468999999999999999988874 66788888886654442 2232 3478999993 3 3446677888
Q ss_pred cEEEE
Q 019359 176 TYLVL 180 (342)
Q Consensus 176 ~~iIv 180 (342)
++||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98874
No 421
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=77.26 E-value=1.3 Score=37.90 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=18.6
Q ss_pred hHHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 57 ~~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
++..++.|.+ ++.-|+||+|||.++
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556667876 445689999999874
No 422
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=77.26 E-value=1.5 Score=39.53 Aligned_cols=50 Identities=14% Similarity=0.035 Sum_probs=29.7
Q ss_pred cCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~~~~ 120 (342)
.|.-+++.|++|+|||..++-.+...... .+.+++++.---. ..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-------~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-------MGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-------SCCCEEEEESSSC-HHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-------cCCcEEEEeccCC-HHHHHHHH
Confidence 44668899999999997544433333322 1446788765432 33444443
No 423
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.23 E-value=1.6 Score=38.07 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=18.5
Q ss_pred hHHHHhcCCCE--EEEcCCCCchhhHh
Q 019359 57 GWPMALKGRDL--IGIAETGSGKTLSY 81 (342)
Q Consensus 57 ~~~~~~~~~~~--l~~~~tG~GKT~~~ 81 (342)
++..++.|.++ +.-|+||+|||.++
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 45566678764 55589999999874
No 424
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=77.09 E-value=1.4 Score=34.36 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchhhHhH
Q 019359 66 DLIGIAETGSGKTLSYL 82 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~ 82 (342)
.+++.||+|+||++.+-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999997543
No 425
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=77.02 E-value=1.1 Score=41.37 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=13.9
Q ss_pred CEEEEcCCCCchhhH
Q 019359 66 DLIGIAETGSGKTLS 80 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~ 80 (342)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 426
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=76.94 E-value=1.7 Score=38.22 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=16.2
Q ss_pred HHhcCCC--EEEEcCCCCchhhHh
Q 019359 60 MALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 60 ~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
.++.|.+ ++.-|+||+|||.++
T Consensus 131 ~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 131 HNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HhhcCCceEEEEeCCCCCCCCEEe
Confidence 3456766 455689999999874
No 427
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=76.93 E-value=35 Score=31.74 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=56.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHh---hc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD---LR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+... ++.+..++++......... +. ...+|+|+|- +...++++..+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCC
Confidence 668999999999999998888874 6777788877554333222 22 3478999983 23446677889
Q ss_pred cEEEEeccchh
Q 019359 176 TYLVLDEADRM 186 (342)
Q Consensus 176 ~~iIvDE~h~~ 186 (342)
+++|+-+++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999888754
No 428
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.92 E-value=1.2 Score=35.00 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCCchhhHhH
Q 019359 63 KGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~ 82 (342)
+.+-+++.||+|+||++.+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34557789999999997543
No 429
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=76.89 E-value=4.5 Score=36.54 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
+.++||.+|++.-+..+.+.+++. ++.+..++|+.+...+...+. ...+|+|+|.
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 113 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 113 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECH
Confidence 678999999999999988888764 889999999886544322221 2367999983
No 430
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=76.84 E-value=1.4 Score=32.63 Aligned_cols=16 Identities=25% Similarity=0.056 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.|++|+|||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999753
No 431
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=76.83 E-value=1.1 Score=34.27 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=12.9
Q ss_pred EEEEcCCCCchhhHh
Q 019359 67 LIGIAETGSGKTLSY 81 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~ 81 (342)
+++.|+.|+|||+.+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999753
No 432
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=76.66 E-value=1.2 Score=34.66 Aligned_cols=18 Identities=33% Similarity=0.045 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.+.-+.+.||.|+|||+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 345578999999999975
No 433
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=76.61 E-value=5.5 Score=27.10 Aligned_cols=37 Identities=8% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhCCCCcEeecCCCC
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (342)
.+++++|||.+-..+...+..|.+.|+....+.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4778999999988999999999999986688888875
No 434
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=76.59 E-value=8.8 Score=32.68 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=54.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---HhhcC-CCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLRR-GVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.++.. +..+..++|+.+..... ..+.. ..+|+|+|. .....+++..+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 568999999999999999888874 66788888886654432 23333 478999993 33456678889
Q ss_pred cEEEEeccc
Q 019359 176 TYLVLDEAD 184 (342)
Q Consensus 176 ~~iIvDE~h 184 (342)
++||.-+.-
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 988875544
No 435
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=76.58 E-value=2.1 Score=30.26 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=32.5
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhCCCC-cEeecCCCCH
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKNQ 308 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 308 (342)
.+++++|||.+-..+...+..|.+.|+. +..+.|++..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4678999999988899999999998885 8889998753
No 436
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=76.55 E-value=1 Score=35.96 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.7
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 44678889999999999963
No 437
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=76.55 E-value=0.97 Score=36.64 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.-+++.|++|+|||..+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45889999999999753
No 438
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=76.50 E-value=1.2 Score=33.58 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCCchhhHhHH
Q 019359 63 KGRDLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~~~~ 83 (342)
.|+.+++.|+.|+|||..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 356799999999999976443
No 439
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=76.45 E-value=1.7 Score=37.43 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=17.6
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHhH
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSYL 82 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~~ 82 (342)
+..++.|.+ ++.-|+||+|||.++.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEec
Confidence 344556765 4556899999998843
No 440
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=76.41 E-value=1.1 Score=35.05 Aligned_cols=20 Identities=30% Similarity=0.159 Sum_probs=16.8
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44678899999999999973
No 441
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=76.36 E-value=1.5 Score=35.34 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.+..+.+.||+|+|||++
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999975
No 442
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=76.34 E-value=1.3 Score=34.64 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.|++|+|||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 443
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=76.30 E-value=1.5 Score=33.83 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.|++|+|||..+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999753
No 444
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=76.27 E-value=1.4 Score=34.44 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
+..+++.|++|+|||+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346889999999999753
No 445
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=76.13 E-value=1.3 Score=39.44 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.7
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
+.+++.||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999753
No 446
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=76.06 E-value=2.2 Score=36.74 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=17.9
Q ss_pred HhcCCCEEEEcCCCCchhhHh
Q 019359 61 ALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~ 81 (342)
+.+|+.+.+.+|+|+|||..+
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHH
Confidence 346899999999999999754
No 447
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.97 E-value=2 Score=45.20 Aligned_cols=48 Identities=19% Similarity=0.039 Sum_probs=32.7
Q ss_pred HhcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 019359 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l~~q~~ 117 (342)
+..++++++.+|+|+|||..+...+...+.. +.+++++.-. ++..++.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTT-SCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEcc-ccHHHHH
Confidence 3456889999999999998765555555433 5668887654 3334444
No 448
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=75.95 E-value=1.7 Score=37.35 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=16.9
Q ss_pred HHHHhcCCC--EEEEcCCCCchhhHh
Q 019359 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (342)
Q Consensus 58 ~~~~~~~~~--~l~~~~tG~GKT~~~ 81 (342)
+..++.|.+ ++.-|+||+|||.++
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344456766 455589999999874
No 449
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=75.81 E-value=8.5 Score=35.97 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=47.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhcC-CCcEEEeChHHHHHHHhccccCCCCccEE
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (342)
+.++||++|++.-+..+.+.+++. ++.+..++|.. .......+.. ..+|+|+| +.+. ..+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaT-----dv~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITT-----DISE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEEC-----GGGG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEEC-----chhh-cceeeC-CcEE
Confidence 568999999999999888888774 77888899842 2222333333 47899999 3333 355666 7776
Q ss_pred E
Q 019359 179 V 179 (342)
Q Consensus 179 I 179 (342)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 450
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=75.75 E-value=1.5 Score=33.26 Aligned_cols=15 Identities=33% Similarity=0.217 Sum_probs=12.9
Q ss_pred EEEEcCCCCchhhHh
Q 019359 67 LIGIAETGSGKTLSY 81 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~ 81 (342)
+++.|++|+|||+.+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999753
No 451
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=75.65 E-value=9.7 Score=27.16 Aligned_cols=68 Identities=13% Similarity=0.024 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCCcEEEEeC------CchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019359 262 LIKLLKEVMDGSRILIFTE------TKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 329 (342)
Q Consensus 262 l~~~l~~~~~~~~~lvf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 329 (342)
+.+.+++.....+++||+. .-..|..+.+.|.+.+++...+.-...+..+..+.+.......++|+.-
T Consensus 24 ~~~~v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI~ 97 (135)
T 2wci_A 24 TIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVD 97 (135)
T ss_dssp HHHHHHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEET
T ss_pred HHHHHHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEEC
Confidence 3344444444567889976 5678999999999999888777666565555555554444445555543
No 452
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=75.48 E-value=12 Score=25.95 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=43.1
Q ss_pred HHHhhcCCCcEEEEeC------CchhHHHHHHHHHhCCCC-cEeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019359 265 LLKEVMDGSRILIFTE------TKKGCDQVTRQLRMDGWP-ALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 329 (342)
Q Consensus 265 ~l~~~~~~~~~lvf~~------~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 329 (342)
.+++....++++||.. .-..+..+.+.|.+.+++ ...+.-..++..+..+.+.......++++.-
T Consensus 12 ~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vfI~ 83 (118)
T 2wem_A 12 QLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLN 83 (118)
T ss_dssp HHHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEEET
T ss_pred HHHHHhccCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEEEC
Confidence 3444445678999987 477899999999999985 7766655565555554444333345555443
No 453
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=75.43 E-value=1.5 Score=33.86 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=13.1
Q ss_pred CEEEEcCCCCchhhH
Q 019359 66 DLIGIAETGSGKTLS 80 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~ 80 (342)
.+.+.|++|+|||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999975
No 454
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=75.23 E-value=5.1 Score=33.57 Aligned_cols=15 Identities=13% Similarity=0.023 Sum_probs=12.8
Q ss_pred CEEEEcCCCCchhhH
Q 019359 66 DLIGIAETGSGKTLS 80 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~ 80 (342)
-+.+.||.|+|||+.
T Consensus 94 iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999975
No 455
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.16 E-value=1.8 Score=31.57 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=13.0
Q ss_pred CEEEEcCCCCchhhH
Q 019359 66 DLIGIAETGSGKTLS 80 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~ 80 (342)
-.++.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999975
No 456
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=75.05 E-value=3 Score=29.88 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=33.3
Q ss_pred hcCCCcEEEEeCCchhHHHHHHHHHhCCC-CcEeecCCCC
Q 019359 269 VMDGSRILIFTETKKGCDQVTRQLRMDGW-PALSIHGDKN 307 (342)
Q Consensus 269 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 307 (342)
...+++++|||.+-..+...+..|.+.|+ ++..+.|++.
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 33478899999998899999999999998 5888999875
No 457
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=74.96 E-value=2.5 Score=36.99 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhhHhHH
Q 019359 66 DLIGIAETGSGKTLSYLL 83 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~ 83 (342)
.+.+.++.|+|||++...
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467789999999976443
No 458
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=74.85 E-value=1.7 Score=33.35 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchhhHhH
Q 019359 66 DLIGIAETGSGKTLSYL 82 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~ 82 (342)
.+.+.|++|||||+++-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998643
No 459
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=74.70 E-value=1.1 Score=36.59 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.6
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+.+|+-+.+.||.|+|||+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EETTSEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44677889999999999973
No 460
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=74.55 E-value=1.2 Score=35.32 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=16.7
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+.+|+-+.+.||.|+|||+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44678889999999999973
No 461
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=74.54 E-value=2.3 Score=37.93 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.8
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
.-+.+.|+.|+|||++.
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 35778999999999753
No 462
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.54 E-value=8.5 Score=42.65 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHh-h---HHHHhcCCCEEEEcCCCCchhhHhH
Q 019359 36 DYCLEVIAKLGFVEPTPIQAQ-G---WPMALKGRDLIGIAETGSGKTLSYL 82 (342)
Q Consensus 36 ~~~~~~l~~~~~~~l~~~Q~~-~---~~~~~~~~~~l~~~~tG~GKT~~~~ 82 (342)
+.+.+.....|. .+.+.+.. + .+.+..++.+++.||+|+|||.++-
T Consensus 875 ~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 875 KKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 444555666777 56665443 3 3344456789999999999998643
No 463
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=74.52 E-value=1.6 Score=33.50 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+.+.|++|+|||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999753
No 464
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=74.51 E-value=3.3 Score=31.14 Aligned_cols=24 Identities=29% Similarity=0.130 Sum_probs=16.5
Q ss_pred CCEEEEcCCCCchhhHhHHHHHHhh
Q 019359 65 RDLIGIAETGSGKTLSYLLPAFVHV 89 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~~~~~~~~~ 89 (342)
.-+.+.|+.|+|||.. +-.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHH-HHHHHHHH
T ss_pred eEEEEEeCCCCCHHHH-HHHHHHhc
Confidence 3478899999999964 33344443
No 465
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=74.48 E-value=16 Score=24.59 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=41.3
Q ss_pred hcCCCcEEEEeC------CchhHHHHHHHHHhCCCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEE
Q 019359 269 VMDGSRILIFTE------TKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA 328 (342)
Q Consensus 269 ~~~~~~~lvf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 328 (342)
.....+++||.. +-..+..+...|.+.++....+.-+..+..+..+.+.......++|+.
T Consensus 11 ~i~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi 76 (109)
T 1wik_A 11 LTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV 76 (109)
T ss_dssp HHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC
T ss_pred HhccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 334567888876 456899999999999998887777666655665555554344555543
No 466
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.47 E-value=3.1 Score=36.58 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=15.2
Q ss_pred CEEEEcCCCCchhhHhHHHH
Q 019359 66 DLIGIAETGSGKTLSYLLPA 85 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~~~~~ 85 (342)
.+++.++.|+|||++..-.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46778999999998754433
No 467
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=74.38 E-value=10 Score=32.55 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=51.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
..++||.++++.-+..+.+.+... ++.+..++|+.+..... ..+. ...+|+|+|. ....++++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccC
Confidence 357999999999999988888874 67788888886654432 2222 3478999993 33446677888
Q ss_pred cEEEE
Q 019359 176 TYLVL 180 (342)
Q Consensus 176 ~~iIv 180 (342)
+++|.
T Consensus 346 ~~Vi~ 350 (410)
T 2j0s_A 346 SLIIN 350 (410)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 468
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=74.35 E-value=9.9 Score=33.27 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=45.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhh-cCCCcEEEeChHHHHHHHhccccCCCCccEE
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDL-RRGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (342)
+.++||++|++.-+..+.+.+++. +..+..++|+... .....+ ....+|+|+| ..+.. .+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~-~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFE-SEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHH-HHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHH-HHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 457999999999999999998885 6788888886322 222222 2357999999 44433 44555 5554
No 469
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=74.34 E-value=11 Score=33.22 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=47.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhHHhhc-CCCcEEEeChHHHHHHHhccccCCCCccEE
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (342)
+.++||.+|++.-+.++.+.+++. ++.+..+++.... .....+. ...+|+|+| +.+ ...+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~-~~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DIS-EMGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGG-GSSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHH-HhCcCCCC-CEE
Confidence 457999999999999988888773 6778888886553 2333333 347899999 433 34556666 666
Q ss_pred E
Q 019359 179 V 179 (342)
Q Consensus 179 I 179 (342)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 6
No 470
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=74.30 E-value=1.7 Score=34.14 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.4
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
.+++.|++|+|||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999753
No 471
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=73.79 E-value=1.5 Score=32.40 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.4
Q ss_pred hcCCCEEEEcCCCCchhh
Q 019359 62 LKGRDLIGIAETGSGKTL 79 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~ 79 (342)
..|.-+.+.||.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 456778899999999996
No 472
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.68 E-value=2.4 Score=40.39 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhhHh
Q 019359 64 GRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~ 81 (342)
..++++.||+|+|||.++
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 368999999999999754
No 473
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=73.68 E-value=1.2 Score=35.15 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=16.0
Q ss_pred HhcCCCEEEEcCCCCchhh
Q 019359 61 ALKGRDLIGIAETGSGKTL 79 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~ 79 (342)
+..|+-+.+.||.|+|||+
T Consensus 27 i~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKST 45 (224)
T ss_dssp EETTCEEEEEECTTSCHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3467778899999999996
No 474
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=73.57 E-value=1.9 Score=36.90 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchhhHh
Q 019359 66 DLIGIAETGSGKTLSY 81 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~~ 81 (342)
-.++.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4779999999999754
No 475
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=73.57 E-value=1.3 Score=36.06 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.6
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp EETTCEEEEECCTTSCHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34677889999999999973
No 476
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=73.55 E-value=2 Score=34.35 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
++..+++.||.|+|||+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 346789999999999974
No 477
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=73.49 E-value=4.8 Score=29.18 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=31.1
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhCCC-CcEeecCCCC
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMDGW-PALSIHGDKN 307 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 307 (342)
.+++++|||.+-..+...+..|.+.|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 467899999998888999999999998 5889999874
No 478
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=73.44 E-value=1.3 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=17.7
Q ss_pred HhcCCCEEEEcCCCCchhhHh
Q 019359 61 ALKGRDLIGIAETGSGKTLSY 81 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~~ 81 (342)
+..++++++.||+|+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 445789999999999999753
No 479
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=73.36 E-value=1.3 Score=34.64 Aligned_cols=17 Identities=24% Similarity=0.102 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
..+.+.|+.|+|||+++
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999753
No 480
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.18 E-value=2.6 Score=43.64 Aligned_cols=43 Identities=21% Similarity=0.110 Sum_probs=30.0
Q ss_pred hcCCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCcHHH
Q 019359 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (342)
Q Consensus 62 ~~~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~~~l 112 (342)
..++.+++.||+|+|||..++..+...+.. +.+++|+.-....
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~--------G~~vlYI~te~~~ 74 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAEHAL 74 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEECTTSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhC--------CCceEEEEecCcc
Confidence 346789999999999998655545444433 5568888765443
No 481
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=73.15 E-value=8.6 Score=33.07 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=42.7
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHhC----CCCcEeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019359 271 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (342)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 330 (342)
.+.+++|.++++.-+..+++.+++. +..+....|+.+. ....+....+..+|+|+|.
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~iiv~T~ 167 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV---RAEVQKLQMEAPHIIVGTP 167 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTH---HHHHHHHTTTCCSEEEECH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcch---HHHHHHHhcCCCCEEEECH
Confidence 4678999999999999998888753 5667777776653 3334455667889999994
No 482
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=73.09 E-value=2 Score=32.39 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=13.0
Q ss_pred CEEEEcCCCCchhhH
Q 019359 66 DLIGIAETGSGKTLS 80 (342)
Q Consensus 66 ~~l~~~~tG~GKT~~ 80 (342)
-.++.||+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 567899999999975
No 483
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=73.08 E-value=1.4 Score=35.71 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=16.3
Q ss_pred HhcCCCEEEEcCCCCchhh
Q 019359 61 ALKGRDLIGIAETGSGKTL 79 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~ 79 (342)
+..|+-+.+.||.|+|||+
T Consensus 30 i~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred EeCCCEEEEECCCCCCHHH
Confidence 4467788899999999997
No 484
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=72.99 E-value=1.4 Score=35.50 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.1
Q ss_pred CCEEEEcCCCCchhhHh
Q 019359 65 RDLIGIAETGSGKTLSY 81 (342)
Q Consensus 65 ~~~l~~~~tG~GKT~~~ 81 (342)
..+++.|++|+|||..+
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999753
No 485
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.91 E-value=1.4 Score=35.23 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.5
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34677888999999999973
No 486
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=72.86 E-value=3.3 Score=34.75 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=22.8
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcC
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p 108 (342)
+++.+..|.|||+++...+...... +.+++++-.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~--------G~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS--------GKKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--------TCCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC--------CCcEEEEeC
Confidence 4566899999998866555444333 566777654
No 487
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=72.84 E-value=1.6 Score=35.12 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.8
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44678889999999999973
No 488
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=72.75 E-value=1.4 Score=35.72 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=16.4
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577788999999999973
No 489
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=72.66 E-value=1.2 Score=37.14 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=16.8
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+.+.+.||+|+|||..
T Consensus 77 i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 34678899999999999973
No 490
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=72.59 E-value=1.2 Score=35.71 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.5
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34677789999999999973
No 491
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=72.53 E-value=1.6 Score=35.31 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.8
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 44678899999999999973
No 492
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=72.24 E-value=2 Score=36.98 Aligned_cols=18 Identities=33% Similarity=0.176 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhhH
Q 019359 63 KGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 63 ~~~~~l~~~~tG~GKT~~ 80 (342)
.++.+++.||+|+|||..
T Consensus 168 ~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp TCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999974
No 493
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.14 E-value=1.5 Score=35.44 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=16.5
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 38 i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 34677888999999999973
No 494
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=72.13 E-value=3.1 Score=36.12 Aligned_cols=44 Identities=16% Similarity=0.003 Sum_probs=24.3
Q ss_pred CCCEEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEcCc
Q 019359 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (342)
Q Consensus 64 ~~~~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~p~ 109 (342)
|.-+.+.||.|+|||..+...++..... ....+.+..++++.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p--~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIP--LDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSC--GGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccC--cccCCCCCcEEEEeCC
Confidence 3567899999999997544222222211 0011124567777654
No 495
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=71.97 E-value=1.5 Score=35.29 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.5
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34677889999999999973
No 496
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=71.93 E-value=1.5 Score=35.73 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.4
Q ss_pred HhcCCCEEEEcCCCCchhh
Q 019359 61 ALKGRDLIGIAETGSGKTL 79 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~ 79 (342)
+..|+-+.+.||.|+|||+
T Consensus 42 i~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKST 60 (271)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 4467888999999999996
No 497
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=71.79 E-value=12 Score=32.04 Aligned_cols=71 Identities=7% Similarity=0.150 Sum_probs=51.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhh---HHhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.++++.-+..+.+.+... ++.+..++|+.+.... ...+. ...+|+|+|. .....+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCC
Confidence 468999999999999999888875 6678888887665443 22332 2478999993 23345677788
Q ss_pred cEEEE
Q 019359 176 TYLVL 180 (342)
Q Consensus 176 ~~iIv 180 (342)
+++|.
T Consensus 328 ~~Vi~ 332 (400)
T 1s2m_A 328 NVVIN 332 (400)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88775
No 498
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=71.78 E-value=3.8 Score=34.49 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=22.3
Q ss_pred EEEEcCCCCchhhHhHHHHHHhhhcCCCccCCCCceEEEEc
Q 019359 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (342)
Q Consensus 67 ~l~~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 107 (342)
+++.+..|.|||.++...+...... |.+++++-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~--------G~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKV--------RSSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTS--------SSCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC--------CCeEEEEE
Confidence 5567889999998766555444332 66787763
No 499
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=71.57 E-value=1.6 Score=35.48 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=16.4
Q ss_pred HhcCCCEEEEcCCCCchhhH
Q 019359 61 ALKGRDLIGIAETGSGKTLS 80 (342)
Q Consensus 61 ~~~~~~~l~~~~tG~GKT~~ 80 (342)
+..|+-+.+.||.|+|||+.
T Consensus 47 i~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHH
Confidence 34577788999999999973
No 500
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=71.55 E-value=55 Score=30.47 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=55.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCcchhhH---Hhhc-CCCcEEEeChHHHHHHHhccccCCCCc
Q 019359 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (342)
Q Consensus 100 ~~~vlil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (342)
+.++||.|+++.-+..+.+.+... ++.+..++++.+..... ..+. ...+|+|+| +. ...++++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~-l~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NL-LREGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CC-CCTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Ch-hhcCccCCCC
Confidence 668999999999999998888874 66777788775443332 2233 347899998 32 3446677889
Q ss_pred cEEEEeccchh
Q 019359 176 TYLVLDEADRM 186 (342)
Q Consensus 176 ~~iIvDE~h~~ 186 (342)
+++|+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99998887653
Done!