BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019361
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HZQ|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod) In
Complex With Progesterone
pdb|2HZR|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod)
Length = 174
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 30/172 (17%)
Query: 119 KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGY 178
++FD +Y GRW+E+ + F E+ C Q Y+ + ++ DG
Sbjct: 13 ENFDVNKYPGRWYEIEKIPTTF-----ENGRCIQANYSLXENG---KIKVLNQELRADGT 64
Query: 179 ITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFAL 238
+ I G E N+T+ K E+ +F F P PY ++ATDY+N+AL
Sbjct: 65 VNQIEG-------EATPVNLTEPAKLEV-------KFSW--FXPSAPYHILATDYENYAL 108
Query: 239 VSGAKDKS------FIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ 284
V S F I +R PE ++ K+ L + D K T Q
Sbjct: 109 VYSCTSISQSFHVDFAWILARNVALPPETVDSLKNILTSNNIDVKKXTVTDQ 160
>pdb|2WWP|A Chain A, Crystal Structure Of The Human Lipocalin-Type
Prostaglandin D Synthase Crystallised With The Substrate
Analog
9,11-Dideoxy-9alpha,11alpha-Epoxymethanoprostaglandin
F2alpha
pdb|2WWP|B Chain B, Crystal Structure Of The Human Lipocalin-Type
Prostaglandin D Synthase Crystallised With The Substrate
Analog
9,11-Dideoxy-9alpha,11alpha-Epoxymethanoprostaglandin
F2alpha
Length = 176
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 227 DVIATDYDNFALV--SGAK----DKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIK 280
V+ TDYD +AL+ G+K D +YSRT TP E EK+ ++ G+ + I
Sbjct: 98 SVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIV 157
Query: 281 DTPQ 284
PQ
Sbjct: 158 FLPQ 161
>pdb|3O19|A Chain A, Structure-Function Analysis Of Human L-Prostaglandin D
Synthase Bound With Fatty Acid
pdb|3O22|A Chain A, Structure-Function Analysis Of Human L-Prostaglandin D
Synthase Bound With Fatty Acid
pdb|3O2Y|A Chain A, Structure-Function Analysis Of Human L-Prostaglandin D
Synthase Bound With Fatty Acid
pdb|3O2Y|B Chain B, Structure-Function Analysis Of Human L-Prostaglandin D
Synthase Bound With Fatty Acid
Length = 162
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 228 VIATDYDNFALV--SGAK----DKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKD 281
V+ TDYD +AL+ G+K D +YSRT TP E EK+ ++ G+ + I
Sbjct: 92 VVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIVF 151
Query: 282 TPQ 284
PQ
Sbjct: 152 LPQ 154
>pdb|1Z24|A Chain A, The Molecular Structure Of Insecticyanin From The Tobacco
Hornworm Manduca Sexta L. At 2.6 A Resolution
Length = 189
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 28/123 (22%)
Query: 120 DFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYI 179
DFD ++G W E+A L QG+ CT Y +D +K ++ ++F +G +
Sbjct: 17 DFDLSAFAGAWHEIAKLPLENENQGK----CTIAEYKYDGKKASV-YNSFVSNGVKE--- 68
Query: 180 TGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFP----TLPFIPKEPYDVIATDYDN 235
+ G+++ P+ + K +GK + F + +P V+ATDY N
Sbjct: 69 -YMEGDLEIAPDAKYTK-----------QGKYVMTFKFGQRVVNLVPW----VLATDYKN 112
Query: 236 FAL 238
+A+
Sbjct: 113 YAI 115
>pdb|1GKA|B Chain B, The Molecular Basis Of The Coloration Mechanism In Lobster
Shell. Beta-Crustacyanin At 3.2 A Resolution
Length = 174
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 30/151 (19%)
Query: 120 DFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYI 179
+FD RY+GRW++ ++ + Q C Y + +V T
Sbjct: 20 NFDLRRYAGRWYQTHIIENAY----QPVTRCIHSNYEYSTNDYGFKVTT----------- 64
Query: 180 TGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALV 239
G N +E L+ + +E + P+ + PY+VI TDY+ ++ V
Sbjct: 65 AGFNPN-----DEYLKIDFKVYPTKEFPAAHMLIDAPS---VFAAPYEVIETDYETYSCV 116
Query: 240 -----SGAKDKSFIQIYSRTP-TPGPEFIEK 264
+ F ++SRTP T GP +EK
Sbjct: 117 YSCITTDNYKSEFAFVFSRTPQTSGPA-VEK 146
>pdb|2XST|A Chain A, Crystal Structure Of The Human Lipocalin 15
Length = 161
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 33/172 (19%)
Query: 120 DFDPVRYSGRWFEV--ASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDG 177
DF+ ++SG W+ V AS R F G+ T+ + ++ + ++ G DG
Sbjct: 11 DFNAEKFSGLWYVVSMASDCRVFLGKKDHLSMSTRAIRPTEEGGLHVHME----FPGADG 66
Query: 178 YITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFA 237
C N D E + + + + R P L ++ ++ TDY +FA
Sbjct: 67 ----------C--------NQVDAEYLK-VGSEGHFRVPALGYLDVR---IVDTDYSSFA 104
Query: 238 LVSGAKD-----KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ 284
++ K+ + +Q+YSRT P+ ++ ++ + G + + PQ
Sbjct: 105 VLYIYKELEGALSTMVQLYSRTQDVSPQALKSFQDFYPTLGLPKDMMVMLPQ 156
>pdb|3MBT|A Chain A, Structure Of Monomeric Blc From E. Coli
Length = 168
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 26/168 (15%)
Query: 114 RGMTA-KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVH 172
RG+T +FD RY G W+E+A F +G E T Y+ +
Sbjct: 8 RGVTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTAT---YSLRDD------------ 51
Query: 173 GGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATD 232
GG + G + + E + T + +K + PF Y+VIA D
Sbjct: 52 GGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAALKVSFFG-----PFYGG--YNVIALD 104
Query: 233 YD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 279
+ ALVSG D+ ++ I SRTPT E ++ + G+D +K
Sbjct: 105 REYRHALVSGP-DRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKF 151
>pdb|1EPA|A Chain A, Structure Of The Epididymal Retinoic Acid-Binding Protein
At 2.1 Angstroms Resolution
pdb|1EPA|B Chain B, Structure Of The Epididymal Retinoic Acid-Binding Protein
At 2.1 Angstroms Resolution
pdb|1EPB|A Chain A, Structure Of The Epididymal Retinoic Acid-Binding Protein
At 2.1 Angstroms Resolution
pdb|1EPB|B Chain B, Structure Of The Epididymal Retinoic Acid-Binding Protein
At 2.1 Angstroms Resolution
Length = 164
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 31/167 (18%)
Query: 119 KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGY 178
KDFD ++ G W+E+A FA + T G+ +++ A+ V+
Sbjct: 4 KDFDISKFLGFWYEIA-----FASK-----MGTPGLAHKEEKMGAMVVE----------- 42
Query: 179 ITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFA- 237
++ N+ L ++ LEK +G +F K+ V ATDY +A
Sbjct: 43 ---LKENLLALTTTYYSEDHCVLEKVTATEGDGPAKFQVTRLSGKKEVVVEATDYLTYAI 99
Query: 238 -----LVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 279
LV+GA ++ +++YSR+ E + ++ ++ G+ +
Sbjct: 100 IDITSLVAGAVHRT-MKLYSRSLDDNGEALYNFRKITSDHGFSETDL 145
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 163 AIQVDTFCVHGGPDGYITGIRGNVQC 188
A+Q++ FC++G YITGI NV
Sbjct: 108 ALQIENFCMNGAFINYITGIVSNVNS 133
>pdb|1QWD|A Chain A, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
pdb|1QWD|B Chain B, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
Length = 177
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 114 RGMTA-KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVH 172
RG+T +FD RY G W+E+A F +G E T + ++ + V ++
Sbjct: 26 RGVTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSL----RDDGGLNV----IN 76
Query: 173 GG--PDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIA 230
G PD RG Q + E + T + +K + PF Y+VIA
Sbjct: 77 KGYNPD------RGMWQ---QSEGKAYFTGAPTRAALKVSFFG-----PFYGG--YNVIA 120
Query: 231 TDYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 279
D + ALV G D+ ++ I SRTPT E ++ + G+D +K
Sbjct: 121 LDREYRHALVCGP-DRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKF 169
>pdb|3S26|A Chain A, Crystal Structure Of Murine Siderocalin (Lipocalin 2,
24p3)
Length = 190
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 228 VIATDYDNFALV---SGAKDKSFIQI--YSRTPTPGPEFIEKYKSYLANFGY-DPNKIKD 281
V TDY+ FA+V +++K + +I Y RT PE E++ + + G D N I
Sbjct: 112 VATTDYNQFAMVFFRKTSENKQYFKITLYGRTKELSPELKERFTRFAKSLGLKDDNIIFS 171
Query: 282 TPQD 285
P D
Sbjct: 172 VPTD 175
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 163 AIQVDTFCVHGGPDGYITGIRGNVQC 188
A+Q++ FC++G YITGI NV
Sbjct: 122 ALQIENFCMNGAFINYITGIVSNVNS 147
>pdb|2ACO|A Chain A, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
pdb|2ACO|B Chain B, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
Length = 173
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 114 RGMTA-KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVH 172
RG+T +FD RY G W+E+A F +G E T + ++ + V ++
Sbjct: 22 RGVTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSL----RDDGGLNV----IN 72
Query: 173 GG--PDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIA 230
G PD RG Q + E + T + +K + PF Y+VIA
Sbjct: 73 KGYNPD------RGMWQ---QSEGKAYFTGAPTRAALKVSFFG-----PFYGG--YNVIA 116
Query: 231 TDYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 279
D + ALV G D+ ++ I SRTPT E ++ + G+D +K
Sbjct: 117 LDREYRHALVCGP-DRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKF 165
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 163 AIQVDTFCVHGGPDGYITGIRGNVQC 188
A+Q++ FC +G YITGI NV
Sbjct: 122 ALQIENFCXNGAFINYITGIVSNVNS 147
>pdb|3EBK|A Chain A, Crystal Structure Of Major Allergens, Bla G 4 From
Cockroaches
pdb|3EBK|B Chain B, Crystal Structure Of Major Allergens, Bla G 4 From
Cockroaches
Length = 176
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 225 PYDVIATDYDNFALVSG 241
PY V+ATDY+N+A+V G
Sbjct: 95 PYSVLATDYENYAIVEG 111
>pdb|2K23|A Chain A, Solution Structure Analysis Of The Rlcn2
Length = 178
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 24/160 (15%)
Query: 125 RYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRG 184
R+ GRWF V + Q +Y +E + V + V G G R
Sbjct: 26 RFQGRWFVVGLAGNAVQKERQSRFTMYSTIYEL-QEDNSYNVTSILVRG------QGCRY 78
Query: 185 NVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALV---SG 241
++ V + G + + P I V TDYD FA+V
Sbjct: 79 WIRTF--------VPSSRPGQFTLGNIH----SYPQIQSYDVQVADTDYDQFAMVFFQKT 126
Query: 242 AKDKSFIQI--YSRTPTPGPEFIEKYKSYLANFGYDPNKI 279
+++K + ++ Y RT E E++ S+ + G N I
Sbjct: 127 SENKQYFKVTLYGRTKGLSDELKERFVSFAKSLGLKDNNI 166
>pdb|3K6N|A Chain A, Crystal Structure Of The S225e Mutant Kir3.1 Cytoplasmic
Pore Domain
Length = 207
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 72 QVVAADLPHFHNICQLASATDSMPTLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWF 131
V+ A P F+++ Q + T+ + I G E +GM R T+ D V + R+F
Sbjct: 108 HVIDAKSP-FYDLSQRSMQTEQFEVVVILEGIVETTGMTCQAR--TSYTEDEVLWGHRFF 164
Query: 132 EVASLKRGFAGQGQEDCHCT 151
V SL+ GF H T
Sbjct: 165 PVISLEEGFFKVDYSQFHAT 184
>pdb|1U4E|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Girk1 Channel
Length = 212
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 72 QVVAADLPHFHNICQLASATDSMPTLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWF 131
V+ A P F+++ Q + T+ + I G E +GM R T+ D V + R+F
Sbjct: 113 HVIDAKSP-FYDLSQRSMQTEQFEVVVILEGIVETTGMTCQAR--TSYTEDEVLWGHRFF 169
Query: 132 EVASLKRGFAGQGQEDCHCT 151
V SL+ GF H T
Sbjct: 170 PVISLEEGFFKVDYSQFHAT 189
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 72 QVVAADLPHFHNICQLASATDSMPTLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWF 131
V+ A P F+++ Q + T+ + I G E +GM R T+ D V + R+F
Sbjct: 219 HVIDAKSP-FYDLSQRSMQTEQFEVVVILEGIVETTGMTCQAR--TSYTEDEVLWGHRFF 275
Query: 132 EVASLKRGFAGQGQEDCHCT 151
V SL+ GF H T
Sbjct: 276 PVISLEEGFFKVDYSQFHAT 295
>pdb|1W9H|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus.
pdb|2BGG|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Sirna Duplex.
pdb|2BGG|B Chain B, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Sirna Duplex.
pdb|2W42|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Dna Duplex.
pdb|2W42|B Chain B, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Dna Duplex
Length = 427
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 154 VYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYL 213
VY F K P V+ +H ++G R ++ + L++ V +L+KQEM+
Sbjct: 234 VYGFKKSNPDWDVEKLTLH------VSGKRPKMKDGETKILKETVEELKKQEMVSRDV-- 285
Query: 214 RFPTLPFIPKEPYDVIATDYDNFALVSGAKDK 245
++ L P+ V+ + F G K K
Sbjct: 286 KYAILHLNETHPFWVMGDPNNRFHPYEGTKVK 317
>pdb|3EBW|A Chain A, Crystal Structure Of Major Allergens, Per A 4 From
Cockroaches
pdb|3EBW|B Chain B, Crystal Structure Of Major Allergens, Per A 4 From
Cockroaches
Length = 163
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 23/133 (17%)
Query: 115 GMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGG 174
G + D +Y G W+E L R ++ +C YT D E IQV +
Sbjct: 7 GTSFTGLDXTKYVGTWYE---LFRTPNSDEEDFTNCEYDKYTLD-ENGVIQVTSVAYTNS 62
Query: 175 PDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYD 234
G+IT G V E+ + D E Y + TDY
Sbjct: 63 IRGFITST-GTVPSWTEDTFDIAYGDDETW------------------SSTYFXVGTDYQ 103
Query: 235 NFALVSGAKDKSF 247
+++V+G D +
Sbjct: 104 TYSIVAGCLDNDY 116
>pdb|3NDC|A Chain A, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus
pdb|3NDC|B Chain B, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus
Length = 264
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Query: 71 NQVVAADLPHFHNICQLA-----------SATDSMPTLPIELGSD-ERSGMLMMMRGMTA 118
++VV +PH+ C +A ++ TL LG++ ER+ ++++ R +
Sbjct: 174 DEVVQKLVPHYGEDCPVAIVWRASWPDQRVVRATLATLQTSLGAELERTALILVGRSLAT 233
Query: 119 KDFDPVR-YSG 128
+DFD R Y+G
Sbjct: 234 EDFDESRLYAG 244
>pdb|2P23|A Chain A, Crystal Structure Of Human Fgf19
pdb|2P23|B Chain B, Crystal Structure Of Human Fgf19
Length = 194
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 28/107 (26%)
Query: 152 QGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKC 211
QG+ + +E A + + PDGY NV + L +++ +++++ K +
Sbjct: 88 QGLLQYSEEDCAFEEEIR-----PDGY------NVYRSEKHRLPVSLSSAKQRQLYKNRG 136
Query: 212 YLRF----PTLPFIPKEPYDV------------IATD-YDNFALVSG 241
+L P LP +P+EP D+ + TD D F LV+G
Sbjct: 137 FLPLSHFLPMLPMVPEEPEDLRGHLESDMFSSPLETDSMDPFGLVTG 183
>pdb|3NEI|A Chain A, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus (No Sah Bound)
pdb|3NEI|B Chain B, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus (No Sah Bound)
Length = 281
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Query: 71 NQVVAADLPHFHNICQLA-----------SATDSMPTLPIELGSD-ERSGMLMMMRGMTA 118
++VV +PH+ C +A ++ TL LG++ ER+ ++++ R +
Sbjct: 191 DEVVQKLVPHYGEDCPVAIVWRASWPDQRVVRATLATLQTSLGAELERTALILVGRSLAT 250
Query: 119 KDFDPVR-YSG 128
+DFD R Y+G
Sbjct: 251 EDFDESRLYAG 261
>pdb|1N9P|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-protein
Activated Inward Rectifier Potassium Channel 1
Length = 207
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 72 QVVAADLPHFHNICQLASATDSMPTLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWF 131
V+ A P F+++ Q + T+ + I G E +G R T+ D V + R+F
Sbjct: 108 HVIDAKSP-FYDLSQRSXQTEQFEVVVILEGIVETTGXTCQAR--TSYTEDEVLWGHRFF 164
Query: 132 EVASLKRGFAGQGQEDCHCT 151
V SL+ GF H T
Sbjct: 165 PVISLEEGFFKVDYSQFHAT 184
>pdb|1PWA|A Chain A, Crystal Structure Of Fibroblast Growth Factor 19
Length = 162
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 152 QGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKC 211
QG+ + +E A + + PDGY NV + L +++ +++++ K +
Sbjct: 76 QGLLQYSEEDCAFEEEIR-----PDGY------NVYRSEKHRLPVSLSSAKQRQLYKNRG 124
Query: 212 YLRF----PTLPFIPKEPYDV 228
+L P LP +P+EP D+
Sbjct: 125 FLPLSHFLPMLPMVPEEPEDL 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,473,685
Number of Sequences: 62578
Number of extensions: 446309
Number of successful extensions: 894
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 36
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)