Query 019361
Match_columns 342
No_of_seqs 161 out of 1219
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:50:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4824 Apolipoprotein D/Lipoc 100.0 2E-41 4.4E-46 305.4 12.9 188 102-310 23-224 (224)
2 PF08212 Lipocalin_2: Lipocali 100.0 2.1E-35 4.6E-40 255.5 16.5 142 121-284 1-143 (143)
3 COG3040 Blc Bacterial lipocali 100.0 1.8E-33 4E-38 249.0 16.0 147 115-285 25-172 (174)
4 PRK10477 outer membrane lipopr 100.0 1.1E-32 2.4E-37 247.0 15.2 150 112-285 25-175 (177)
5 PF00061 Lipocalin: Lipocalin 99.7 2.6E-17 5.7E-22 138.2 9.7 135 127-284 1-142 (144)
6 PF07137 VDE: Violaxanthin de- 98.9 1.7E-08 3.7E-13 92.0 13.7 173 91-288 7-190 (198)
7 PF03973 Triabin: Triabin; In 98.9 7E-09 1.5E-13 91.5 10.4 120 110-256 10-138 (148)
8 PF02087 Nitrophorin: Nitropho 98.6 1.1E-06 2.4E-11 78.7 13.4 148 114-288 4-171 (178)
9 PLN02372 violaxanthin de-epoxi 98.5 3.3E-06 7.2E-11 84.7 14.2 170 93-287 176-357 (455)
10 PF11032 ApoM: Apolipoprotein 97.4 0.0037 7.9E-08 57.4 13.3 42 245-289 141-185 (186)
11 PF00356 LacI: Bacterial regul 47.0 12 0.00026 26.7 1.4 28 250-277 19-46 (46)
12 COG3914 Spy Predicted O-linked 45.7 46 0.00099 36.0 6.0 38 246-285 460-497 (620)
13 PRK11678 putative chaperone; P 37.9 72 0.0016 33.1 6.0 63 263-340 387-449 (450)
14 PF11423 Repressor_Mnt: Regula 32.4 34 0.00073 22.6 1.6 10 327-336 18-27 (30)
15 PF07215 DUF1419: Protein of u 31.0 24 0.00053 29.9 1.0 13 124-136 39-51 (111)
16 PRK09283 delta-aminolevulinic 29.1 62 0.0013 32.5 3.7 64 258-327 57-126 (323)
17 KOG4626 O-linked N-acetylgluco 27.8 91 0.002 34.5 4.8 35 246-284 789-823 (966)
18 cd00384 ALAD_PBGS Porphobilino 25.8 80 0.0017 31.6 3.8 64 258-327 49-118 (314)
19 cd04824 eu_ALAD_PBGS_cysteine_ 24.8 90 0.0019 31.3 3.9 64 258-327 49-121 (320)
20 PRK13384 delta-aminolevulinic 24.0 82 0.0018 31.6 3.4 64 258-327 59-128 (322)
21 TIGR03067 Planc_TIGR03067 Plan 23.4 4.3E+02 0.0093 21.9 10.0 94 122-242 3-96 (107)
22 PF10346 Con-6: Conidiation pr 20.8 1.3E+02 0.0027 20.8 2.8 21 253-273 15-35 (36)
No 1
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2e-41 Score=305.44 Aligned_cols=188 Identities=41% Similarity=0.642 Sum_probs=162.3
Q ss_pred CCCCCccccCCcCCcccCCCCccCCccceEEEEeecccccCCCCCCceeeEEEEEEeCCCCcEEEEEeEEecCCCCcEEE
Q 019361 102 GSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITG 181 (342)
Q Consensus 102 ~~~~~~~~~~C~~v~~v~nFDL~RY~G~WYEIAr~p~~Fe~~~e~~~~CvtA~Ytl~~~dG~I~V~ns~~~~~~dG~~~~ 181 (342)
..++++++|.||+.++++|||++||+|+|||||+.|..||.+ ..|++..|++.+++|.|.|.|.|++ ++||++..
T Consensus 23 a~gqa~~lg~cpnypv~knFnv~RylGrWYEVas~p~~fe~~----~gctt~~y~~~nkngkI~Vln~~v~-r~dG~~n~ 97 (224)
T KOG4824|consen 23 AAGQAIALGECPNYPVAKNFNVERYLGRWYEVASFPRGFEGK----GGCTTGAYTFDNKNGKIHVLNECVH-RPDGKINF 97 (224)
T ss_pred cccceEeeccCCCCccccCCChhhhcceeeeeeccccccccC----CCceeeeeEecCCCceEEEeeeeee-cCCCccce
Confidence 344557889999999999999999999999999999999764 2499999999988999999999998 47999999
Q ss_pred EeeEEEEcCchhhhhhhhhhccccccccEEEEecCC-------CCCCCCCCeEEEEEcCCcEEEEEecC------CCcEE
Q 019361 182 IRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPT-------LPFIPKEPYDVIATDYDNFALVSGAK------DKSFI 248 (342)
Q Consensus 182 i~G~a~~v~~~~~~~~~~~~~~q~~~~gkl~V~F~~-------~pf~p~~dYwVLdTDYdnYAIVysc~------d~~~l 248 (342)
|+|.|++++++. ....+++.|.. .+| ...|||+.|||++||++|+|- +++++
T Consensus 98 ieG~atpvn~~s-------------~k~e~kf~~~~p~~~~~~l~~--~~iy~Vl~tdyenya~~ysc~alisl~h~df~ 162 (224)
T KOG4824|consen 98 IEGKATPVNEDS-------------DKAELKFEFQEPIFEKCFLRF--PPIYFVLGTDYENYADDYSCHALISLKHKDFL 162 (224)
T ss_pred eeeeeeecCCch-------------hhhcceeEEecCchHhhccCC--CCCcceecccHhheeccccccceeccCCCceE
Confidence 999999998432 12333444331 222 579999999999999999984 56899
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCC-CCcccChHHHHHHhcccchhhhhhcc
Q 019361 249 QIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ-DCEVISNSQLAAMMSMSGMQQALTNQ 310 (342)
Q Consensus 249 WILSRtp~Ls~e~lek~~~~l~~~G~D~skLi~t~Q-sC~~~s~~~l~~~~~~~g~~~~~~~~ 310 (342)
|||||+|++.++.+++++++|.+.|||+++|+.|+| +|+. .+..++|||+||||.+.|+++
T Consensus 163 wIlsRtpn~epEt~~klkn~l~~~gyDpeKl~~Tpq~dcp~-~s~~~~~~~~~~~~~~sl~~~ 224 (224)
T KOG4824|consen 163 WILSRTPNMEPETIAKLKNKLAEEGYDPEKLHDTPQSDCPP-ESAEAAADMKGPGMEKSLFGK 224 (224)
T ss_pred EEEecCCCCChHHHHHHHHHHHHcCCCHHHhccCCccCCCh-hhhhhHHhccCcchhhhhccC
Confidence 999999999999999999999999999999999999 6998 667889999999999999875
No 2
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=100.00 E-value=2.1e-35 Score=255.46 Aligned_cols=142 Identities=37% Similarity=0.629 Sum_probs=112.1
Q ss_pred CCccCCccceEEEEeecccccCCCCCCceeeEEEEEEeCCCCcEEEEEeEEecCCCCcEEEEeeEEEEcCchhhhhhhhh
Q 019361 121 FDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTD 200 (342)
Q Consensus 121 FDL~RY~G~WYEIAr~p~~Fe~~~e~~~~CvtA~Ytl~~~dG~I~V~ns~~~~~~dG~~~~i~G~a~~v~~~~~~~~~~~ 200 (342)
||++||+|+||||||+|+.| |++|.|++++|++.+ +|.|.|.|+|++ .+|....++|+|++.++.
T Consensus 1 ~Dl~rY~G~WYEiar~p~~~----q~~~~~~~a~Yt~~~-dg~i~V~n~~~~--~~g~~~~~~g~a~~~~~~-------- 65 (143)
T PF08212_consen 1 VDLDRYMGTWYEIARYPNFF----QRGCVCVTAEYTLRD-DGTISVRNSCRR--PDGKIKTIRGTATVVDPS-------- 65 (143)
T ss_dssp --CCCC-EEEEEEEEE--CC----CTT-ECEEEEEEE-T-TS-EEEEEEEEE--TTTCCCEEEEEEEESSBT--------
T ss_pred CChHHcCEeeeEEEEECCcc----cceeeeeeeeEEEcC-CCEEEEEEEEEc--CCCCEEEEEeEEEEcCCC--------
Confidence 79999999999999999999 578999999999997 799999999997 579999999999987542
Q ss_pred hccccccccEEEEecCCCCCCCCCCeEEEEEcCC-cEEEEEecCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCc
Q 019361 201 LEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 279 (342)
Q Consensus 201 ~~~q~~~~gkl~V~F~~~pf~p~~dYwVLdTDYd-nYAIVysc~d~~~lWILSRtp~Ls~e~lek~~~~l~~~G~D~skL 279 (342)
.+|+|.|+|...++.+.++||||+|||+ .|+||. +++++++|||||+|+++++.+++++++++++|||+++|
T Consensus 66 ------~~~~l~V~f~~~~~~~~~~YwVl~~D~dY~~~iv~-~~~~~~~WILsR~p~~~~~~~~~~~~~~~~~G~d~~~l 138 (143)
T PF08212_consen 66 ------GPAKLKVRFPGIPFPPKGNYWVLYTDYDYSWAIVG-SPDREYLWILSRTPQLSEETYAEILDRAKQQGYDVSKL 138 (143)
T ss_dssp ------TSSEEEEESST---TEEEEEEEEEEBTTSSEEEEE-ECCCCEEEEEESSSS--HHHHHHHHHHHHHTT--GGGE
T ss_pred ------CccEEEEEEeccccCCCcceEEEEEcCCccEEEEe-cCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHe
Confidence 3799999997544444789999999999 577774 56899999999999999999999999999999999999
Q ss_pred EEcCC
Q 019361 280 KDTPQ 284 (342)
Q Consensus 280 i~t~Q 284 (342)
++++|
T Consensus 139 ~~~~Q 143 (143)
T PF08212_consen 139 IWTPQ 143 (143)
T ss_dssp EE---
T ss_pred EECCC
Confidence 99998
No 3
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.8e-33 Score=249.01 Aligned_cols=147 Identities=28% Similarity=0.482 Sum_probs=132.1
Q ss_pred CcccCCCCccCCccceEEEEeecccccCCCCCCceeeEEEEEEeCCCCcEEEEEeEEecCCCCcEEEEeeEEEEcCchhh
Q 019361 115 GMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEEL 194 (342)
Q Consensus 115 v~~v~nFDL~RY~G~WYEIAr~p~~Fe~~~e~~~~CvtA~Ytl~~~dG~I~V~ns~~~~~~dG~~~~i~G~a~~v~~~~~ 194 (342)
++++.+||++||+|+||||||+|..| +++|..++|+|.+.+ ++.|.|.|.|+.+.. +.++.++|+|+++++.
T Consensus 25 p~~~~~~dl~~Y~G~WyEvaR~p~~f----~~gc~~vtA~Y~l~d-~~~I~V~n~c~~~~~-~~~~~ieGkA~i~~~~-- 96 (174)
T COG3040 25 PKPVNNFDLQRYLGKWYEVARLPMRF----EKGCVQVTATYSLRD-DGGISVINRCRTGDG-GKWSQIEGKAKIVDNA-- 96 (174)
T ss_pred CCcccccchhhcceeeeeeecccchh----hhcceeeEeEEEEec-CCceEEEeccccCCC-CCceeecceEEEecCc--
Confidence 34566799999999999999999999 578999999999997 899999999997632 3899999999988653
Q ss_pred hhhhhhhccccccccEEEEecCCCCCCCCCCeEEEEEcCC-cEEEEEecCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC
Q 019361 195 EKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFG 273 (342)
Q Consensus 195 ~~~~~~~~~q~~~~gkl~V~F~~~pf~p~~dYwVLdTDYd-nYAIVysc~d~~~lWILSRtp~Ls~e~lek~~~~l~~~G 273 (342)
..++++|+|. .||. ++|||++.|.| .||||. .++++++|||||+|+++++.++++.+++++.|
T Consensus 97 ------------~~a~LkVsF~-~pF~--g~Y~Vl~~d~eYs~aiVg-sPdr~ylWlLsRtP~~s~~~~~~ml~~ak~~G 160 (174)
T COG3040 97 ------------TRAKLKVSFF-GPFY--GDYWVLALDPEYSWAIVG-SPDREYLWLLSRTPTLSQETLKRMLEIAKRRG 160 (174)
T ss_pred ------------cccEEEEEec-CCcc--ccEEEEEECCCccEEEEe-CCCcceEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 4689999995 5884 89999999999 799995 57999999999999999999999999999999
Q ss_pred CCCCCcEEcCCC
Q 019361 274 YDPNKIKDTPQD 285 (342)
Q Consensus 274 ~D~skLi~t~Qs 285 (342)
||.+++++++|.
T Consensus 161 fdv~~li~~~~~ 172 (174)
T COG3040 161 FDVSKLIFVQQP 172 (174)
T ss_pred CCcceeEecCCC
Confidence 999999999985
No 4
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=100.00 E-value=1.1e-32 Score=247.02 Aligned_cols=150 Identities=25% Similarity=0.368 Sum_probs=132.4
Q ss_pred CcCCcccCCCCccCCccceEEEEeecccccCCCCCCceeeEEEEEEeCCCCcEEEEEeEEecCCCCcEEEEeeEEEEcCc
Q 019361 112 MMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPE 191 (342)
Q Consensus 112 C~~v~~v~nFDL~RY~G~WYEIAr~p~~Fe~~~e~~~~CvtA~Ytl~~~dG~I~V~ns~~~~~~dG~~~~i~G~a~~v~~ 191 (342)
+..++++++||++||+|+||||||+|+.| |++|.|++++|++.+ +|+|.|.|+|.+. .+|+.+.+.|+|+.+.+
T Consensus 25 ~~~~~~~~~fDl~ry~G~WYeIar~~~~f----e~~~~~~~a~Y~~~~-~g~i~V~n~~~~~-~~g~~~~~~g~a~~~~~ 98 (177)
T PRK10477 25 PKGVTVVNNFDAKRYLGTWYEIARFDHRF----ERGLEKVTATYSLRD-DGGLNVINKGYNP-DRGMWQESEGKAYFTGA 98 (177)
T ss_pred CCCCcccCccCHHHhccHHHHhhcCCchh----hcCceeEEEEEEECC-CCcEEEEEeeEcC-CCCCEEEEEEEEEecCC
Confidence 45678999999999999999999999999 568999999999997 8999999999864 35899999999987653
Q ss_pred hhhhhhhhhhccccccccEEEEecCCCCCCCCCCeEEEEEcCC-cEEEEEecCCCcEEEEEeCCCCCCHHHHHHHHHHHH
Q 019361 192 EELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLA 270 (342)
Q Consensus 192 ~~~~~~~~~~~~q~~~~gkl~V~F~~~pf~p~~dYwVLdTDYd-nYAIVysc~d~~~lWILSRtp~Ls~e~lek~~~~l~ 270 (342)
. .+++++|+|. +|+ .++|||+++|+| +||||++ ++++++|||||+|+++++.+++++++++
T Consensus 99 ~--------------~~~~~~v~f~-~~~--~~~Y~v~~~d~dY~~aiv~~-~~~~~~wIlsR~p~l~~~~~~~~~~~~~ 160 (177)
T PRK10477 99 P--------------TRAALKVSFF-GPF--YGGYNVIALDREYRHALVCG-PDRDYLWILSRTPTISDEVKQQMLAVAT 160 (177)
T ss_pred C--------------CCeEEEEEec-CCc--ccceEEEEEcCCCCEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 4689999994 565 579999888877 4999964 4899999999999999999999999999
Q ss_pred hcCCCCCCcEEcCCC
Q 019361 271 NFGYDPNKIKDTPQD 285 (342)
Q Consensus 271 ~~G~D~skLi~t~Qs 285 (342)
++|||.++|++++|.
T Consensus 161 ~~G~d~~~l~~~~q~ 175 (177)
T PRK10477 161 REGFDVSKLIWVKQP 175 (177)
T ss_pred HcCCCHHHeEECCCC
Confidence 999999999999985
No 5
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=99.72 E-value=2.6e-17 Score=138.16 Aligned_cols=135 Identities=28% Similarity=0.431 Sum_probs=104.2
Q ss_pred ccceEEEEeecc--cccCCCCCCceeeEEEEEEeCCCCcEEEEEeEEecCCCCcEEEEeeEEEEcCchhhhhhhhhhccc
Q 019361 127 SGRWFEVASLKR--GFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQ 204 (342)
Q Consensus 127 ~G~WYEIAr~p~--~Fe~~~e~~~~CvtA~Ytl~~~dG~I~V~ns~~~~~~dG~~~~i~G~a~~v~~~~~~~~~~~~~~q 204 (342)
+|+||+|++..+ .|... .....|....+++.+ ++.+.+......+ |.+......+..
T Consensus 1 ~G~Wy~v~~as~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~c~~~~~~~~~---------------- 59 (144)
T PF00061_consen 1 AGKWYEVALASDCPEFEEE-KKELKCFPVVIKPLA-NGNLPVTFTSKRG---GQCVTITVTFKK---------------- 59 (144)
T ss_dssp SEEEEEEEEEESSGGHHHH-HHHTTEEEEEEEEHH-TTEEEEEEEEEET---TEEEEEEEEEEE----------------
T ss_pred CceeEEEEEEeCCcchhhh-ccccccEEEEEEeec-CCCeEEEEEEecC---CEEEEEEEeEEe----------------
Confidence 599999999852 12110 223689999999875 7999999887754 334444333332
Q ss_pred cccccEEEEecCCCCCCCCCCeEEEEEcCCcEEEEEecCC-----CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCc
Q 019361 205 EMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKD-----KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 279 (342)
Q Consensus 205 ~~~~gkl~V~F~~~pf~p~~dYwVLdTDYdnYAIVysc~d-----~~~lWILSRtp~Ls~e~lek~~~~l~~~G~D~skL 279 (342)
...+|+|.+.|.. .....+++|++|||++|||+|.|.. ...+|||+|++++++++++++.++++++|++.+++
T Consensus 60 ~~~~g~~~~~~~~--~~~~~~~~v~~tdy~~yai~~~~~~~~g~~~~~~~l~~R~~~l~~~~~~~f~~~~~~~gi~~~~i 137 (144)
T PF00061_consen 60 TEEPGKFTVEFSE--YPGGNDFWVLDTDYDNYAIVYSCKKDNGKHTIVAWLLSRTPELSPEALEKFKKFAKSLGIDEENI 137 (144)
T ss_dssp EEETTEEEEEEEE--STTEEEEEEEEEESSTEEEEEEEEEETTEEEEEEEEEESSSEEEHHHHHHHHHHHHHTTETGGCE
T ss_pred cccCCccceeeec--cccccceeeeccCCCCEEEEEEEccCCCceEEEEEEEcCCCcCCHHHHHHHHHHHHhCCCCHHeE
Confidence 2357999999753 2224599999999999999999975 25689999999999999999999999999999999
Q ss_pred EEcCC
Q 019361 280 KDTPQ 284 (342)
Q Consensus 280 i~t~Q 284 (342)
+.+.|
T Consensus 138 ~~~~~ 142 (144)
T PF00061_consen 138 VRTFQ 142 (144)
T ss_dssp EEEEE
T ss_pred EECCC
Confidence 99876
No 6
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=98.95 E-value=1.7e-08 Score=92.04 Aligned_cols=173 Identities=18% Similarity=0.290 Sum_probs=92.9
Q ss_pred CCCCCccccccCCCCCccccCCcCCcccCCCCccCCccceEEEEeecccccCCCCCCceeeEEEEEEeCCCCcEEEEEeE
Q 019361 91 TDSMPTLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFC 170 (342)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~C~~v~~v~nFDL~RY~G~WYEIAr~p~~Fe~~~e~~~~CvtA~Ytl~~~dG~I~V~ns~ 170 (342)
-+.+-|+|-. ++. +....-+--..+++||+..|.|+||-++-+-..|. -..|..-.|... .+++-..-..
T Consensus 7 vs~k~CVpq~--~D~-g~~pvp~~~~~v~~Fd~~~f~G~Wyit~GlNp~fD-----~FdCQ~h~F~~~--~~kl~~~~~w 76 (198)
T PF07137_consen 7 VSRKKCVPQK--SDV-GEFPVPDPSVLVKSFDPKDFEGKWYITAGLNPTFD-----TFDCQLHEFHTE--KDKLVGKINW 76 (198)
T ss_dssp -----------------------GGGS-S---GGGG-EEEEEEEESSTTTT-----TTSEEEEEEEEE--TTEEEEEEEE
T ss_pred eecccccccC--CcC-CcccCCChhHhhccCCHhHcCceEEEecCCCCCcc-----ccccccceeecC--CCeEEEEEEE
Confidence 3455566642 222 23333334457899999999999999999887772 257999999975 4666554444
Q ss_pred EecCCCCcEEEEeeEEEEcCchhhhhhhhhhccccccccEEEEecCC-CCCCCCCCeEEEEEc----CCcEEEEEecCC-
Q 019361 171 VHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPT-LPFIPKEPYDVIATD----YDNFALVSGAKD- 244 (342)
Q Consensus 171 ~~~~~dG~~~~i~G~a~~v~~~~~~~~~~~~~~q~~~~gkl~V~F~~-~pf~p~~dYwVLdTD----YdnYAIVysc~d- 244 (342)
+...++|..-..+..-+.+.. +..||.|+-+=.. ..+ ..+.+||+.+ .+.|.+||-...
T Consensus 77 Ri~~pdggf~~r~~~q~fvqD-------------~~~Pg~lyn~dneyL~y--qddWyIl~~~~~~~~~~~vfVyYrG~n 141 (198)
T PF07137_consen 77 RIPTPDGGFFTRSAVQRFVQD-------------PSQPGILYNHDNEYLHY--QDDWYILGSKIEDKPDDFVFVYYRGRN 141 (198)
T ss_dssp EEE-TTS-EEEEEEEEEEEE--------------SS-TTEEEE---GGG-E--EEEEEEEEEE-SSSTT-EEEEEEEEEE
T ss_pred EeecCCCCceeccceeEeeeC-------------CCCCceEEecCCeeEEe--eeeEEEEeecccCCCCCEEEEEEcccc
Confidence 444567765332221122211 2357777654210 112 5688999963 347999884321
Q ss_pred -----CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCCCCcc
Q 019361 245 -----KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEV 288 (342)
Q Consensus 245 -----~~~lWILSRtp~Ls~e~lek~~~~l~~~G~D~skLi~t~QsC~~ 288 (342)
..-+.+++|+++++++.+.++...+++.|++.++|+.++.+|..
T Consensus 142 dawdgYgGAvVYtrs~~lP~s~~p~l~~aa~k~G~d~~~F~~tDNtC~~ 190 (198)
T PF07137_consen 142 DAWDGYGGAVVYTRSPTLPESIVPELRRAAKKAGIDFSKFIRTDNTCGP 190 (198)
T ss_dssp ETTEEEEEEEEEESSSS--GGGHHHHHHHHHHTT--GGGSEE--STT--
T ss_pred ccccccCceEEEeCCCCCChHHhHHHHHHHHHhCCCHHHeEEecCCCCC
Confidence 14579999999999999999999999999999999999999864
No 7
>PF03973 Triabin: Triabin; InterPro: IPR005657 This family contains saliva proteins from haematophagous insects that counteract vertebrate host haemostasis events such as coagulation, vasoconstriction and platelet aggregation []. These include: Triabin, a serine-protease inhibitor. It forms a non-covalent complex with thrombin at a molecular ratio of 1:1, and inhibits thrombin-induced platelet aggregation. Pallidipin, an anticollagen induced platelet aggregation factor also found in Triatoma pallidipennis salivary homogenates. Procalin, the major allergen of Triatoma protracta saliva. All members of this family belong to MEROPS proteinase inhibitor family I59, clan IZ. ; GO: 0005488 binding, 0030682 evasion or tolerance of host defense response; PDB: 3EBK_B 1AVG_I.
Probab=98.93 E-value=7e-09 Score=91.46 Aligned_cols=120 Identities=21% Similarity=0.373 Sum_probs=64.1
Q ss_pred cCCcCCcccCCCCccCCc-cceEEEEeecccccCCCCCCceeeEEEEEEeCCCCcEEEEEeEEecCCCCcEEEEeeEEEE
Q 019361 110 LMMMRGMTAKDFDPVRYS-GRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQC 188 (342)
Q Consensus 110 ~~C~~v~~v~nFDL~RY~-G~WYEIAr~p~~Fe~~~e~~~~CvtA~Ytl~~~dG~I~V~ns~~~~~~dG~~~~i~G~a~~ 188 (342)
-.|....+|+|||.+||. |+||+...-...- ...|-. |+...++|.+.+.......+..+.. ++|
T Consensus 10 ~~c~~~~~m~nFd~~kFF~g~WyvTH~k~~t~------~tvCr~--y~t~~~~G~~~~v~~y~~~g~~~~~------v~C 75 (148)
T PF03973_consen 10 CKCQNYKAMSNFDPTKFFKGTWYVTHAKNGTS------STVCRK--YKTSQKDGKTKIVGEYTFNGKKGYE------VKC 75 (148)
T ss_dssp TTGGC--S-TT--HHHHCSCEEEEECCSSSGG------CCEEEE--EEECTTT--EEEEEEEC-T-TS-TT------EEE
T ss_pred ccccCCCcccCCChHHccCccEEEEeccCCCC------CceeeE--EEEEEcCCcEEEEEeeecccCcccE------EEE
Confidence 379999999999999999 9999886532211 235654 6665545776665222222111111 122
Q ss_pred cCchhhhhhhhhhccccccccEEEEecCC---CCCCCCCCeEEEEEcCCcEEEEEecCCC-----cEEEEEeCCCC
Q 019361 189 LPEEELEKNVTDLEKQEMIKGKCYLRFPT---LPFIPKEPYDVIATDYDNFALVSGAKDK-----SFIQIYSRTPT 256 (342)
Q Consensus 189 v~~~~~~~~~~~~~~q~~~~gkl~V~F~~---~pf~p~~dYwVLdTDYdnYAIVysc~d~-----~~lWILSRtp~ 256 (342)
.... +....|+|.+.=.. ..| ..++.||+|||++|||+|.|... +.++||.|++.
T Consensus 76 ~~~~-----------~~~~~g~~~f~C~~~~~~~f--~~~~sVi~TDY~nYAl~YrC~~~~~~~~DN~lVL~R~~~ 138 (148)
T PF03973_consen 76 SCTK-----------KSGKKGQFSFDCKSKNGTNF--QVDFSVIDTDYNNYALVYRCVTFESGKEDNYLVLQRNKN 138 (148)
T ss_dssp EEEE-----------ECTTCT-EEEEEECTT-GGC--EEEEEEEEE-TTSEEEEEEEEEESS---EEEEEEESS--
T ss_pred Eecc-----------CcCCCccEEEEEEcCCCcEE--EEEEEEEEcCCCCEEEEEEccCCCCcccccEEEEEcCCC
Confidence 1111 01124454444221 122 46899999999999999999642 57899999985
No 8
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=98.59 E-value=1.1e-06 Score=78.74 Aligned_cols=148 Identities=20% Similarity=0.287 Sum_probs=77.7
Q ss_pred CCcccCCCCccCCc-cceEEEEeecccccCCCCCCceeeEEEEEEeCCCCcEEEEEeEEecCCCC-cEEEEeeEEEEcCc
Q 019361 114 RGMTAKDFDPVRYS-GRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDG-YITGIRGNVQCLPE 191 (342)
Q Consensus 114 ~v~~v~nFDL~RY~-G~WYEIAr~p~~Fe~~~e~~~~CvtA~Ytl~~~dG~I~V~ns~~~~~~dG-~~~~i~G~a~~v~~ 191 (342)
++.++.+||.++|. |.||+...+...-+-. ++.|.|-. ....+|.|+=....+.. ++ ...+..+.+...
T Consensus 4 Ni~~kt~fdk~k~F~g~WYvThyld~~~q~t-~~~ca~~~----~kt~~GkvKE~~~~ynp--~~~~~~Y~is~~~l~-- 74 (178)
T PF02087_consen 4 NIKPKTDFDKDKYFSGTWYVTHYLDTDPQVT-DKYCACFA----PKTSNGKVKEALYHYNP--KNKTYFYDISESKLE-- 74 (178)
T ss_dssp S----TT--HHHHTSSEEEEEEEEESSCCSS-SSEEEEEE----EEEETTEEEEEEEEEET--TTTEEEEEEEEEEEE--
T ss_pred CccccCCCCHHHccCceEEEEEEecCCCCcc-hhhhhhhc----cccCCCceEEEEEEecC--CCceEEEEeeeeecc--
Confidence 46689999999988 8999998875443321 34455542 22236777433333332 22 122222222211
Q ss_pred hhhhhhhhhhcccccccc-EEEEecCC--------CCCCCCCCe--EEEEEcCCcEEEEEecCC---C---cEEEEEeCC
Q 019361 192 EELEKNVTDLEKQEMIKG-KCYLRFPT--------LPFIPKEPY--DVIATDYDNFALVSGAKD---K---SFIQIYSRT 254 (342)
Q Consensus 192 ~~~~~~~~~~~~q~~~~g-kl~V~F~~--------~pf~p~~dY--wVLdTDYdnYAIVysc~d---~---~~lWILSRt 254 (342)
..| |+.-.|.. .+......| .|++|| |+|||||.|-. . +..-||+|+
T Consensus 75 ---------------s~g~KytAk~~~VdK~g~~~~~~~~~~sYt~tv~dtD-ds~AvV~~C~~~~~~~l~~LYaVlnRn 138 (178)
T PF02087_consen 75 ---------------SNGFKYTAKFKTVDKDGKKIEEADEKNSYTITVLDTD-DSYAVVHVCLHEGNKDLGDLYAVLNRN 138 (178)
T ss_dssp ---------------ETTSEEEEEEEEE-TTS-EEE---TTEEEEEEEEEEE-SSEEEEEEEEEETTEEEEEEEEEEESS
T ss_pred ---------------CCcceeeeeeeEecCCCCcccccccCceEEEEEEecC-CCeeEEEEecccCcccceeeeeeeecC
Confidence 112 22222210 000112233 459999 78999999952 1 234699999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEcCCC-Ccc
Q 019361 255 PTPGPEFIEKYKSYLANFGYDPNKIKDTPQD-CEV 288 (342)
Q Consensus 255 p~Ls~e~lek~~~~l~~~G~D~skLi~t~Qs-C~~ 288 (342)
.... .-++++..|.+.|+-.++|+.+.|. |.|
T Consensus 139 ~~~~--~~~KVksal~~vglkL~df~~~k~~~C~Y 171 (178)
T PF02087_consen 139 KNAN--PNDKVKSALDKVGLKLDDFTSTKDNKCKY 171 (178)
T ss_dssp TT------HHHHHHHHHTT--GGGSEESTTST---
T ss_pred CCCC--cchhHHHHHhhcceeehheeecccCCccc
Confidence 9865 5789999999999999999999995 999
No 9
>PLN02372 violaxanthin de-epoxidase
Probab=98.46 E-value=3.3e-06 Score=84.68 Aligned_cols=170 Identities=16% Similarity=0.304 Sum_probs=112.4
Q ss_pred CCCccccccCCCCCccccCCcCCcccCCCCccCCccceEEEEeecccccCCCCCCceeeEEEEEEeCCCCcEEEEEeEEe
Q 019361 93 SMPTLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVH 172 (342)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~C~~v~~v~nFDL~RY~G~WYEIAr~p~~Fe~~~e~~~~CvtA~Ytl~~~dG~I~V~ns~~~ 172 (342)
..-|+|.+. +.. ....-+--..+++||.+.|.|+||-++-+-..|. -..|..-.|...+ ++.+-..-..+.
T Consensus 176 ~k~CV~~~a--d~g-e~Pvp~p~~lv~~F~~~~f~GsWyivaGlNP~yD-----~FdCQ~h~F~~~~-~~kl~~nl~wRv 246 (455)
T PLN02372 176 RKKCVPQKS--DDG-EFPVPDPSALVQNFDTADFNGRWYITSGLNKTFD-----TFDCQLHEFTAED-PDKLVGNLNWRI 246 (455)
T ss_pred ccccccccc--cCC-CCCCCChHHHhhccCccccCccEEEecCCCCCCC-----cccccceeeecCC-CCceEEeeEEEE
Confidence 455777643 222 1122222346889999999999999998877672 2578888888764 566644444444
Q ss_pred cCCCCcEEEEeeEEEE-cCchhhhhhhhhhccccccccEEEEecCCCCCCC-CCCeEEEEEcCCc----EEEEEecCC--
Q 019361 173 GGPDGYITGIRGNVQC-LPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIP-KEPYDVIATDYDN----FALVSGAKD-- 244 (342)
Q Consensus 173 ~~~dG~~~~i~G~a~~-v~~~~~~~~~~~~~~q~~~~gkl~V~F~~~pf~p-~~dYwVLdTDYdn----YAIVysc~d-- 244 (342)
..+||.... +..++. +.. +..||.|+-+ ..-+.- ..+++|++...++ |.+||-...
T Consensus 247 ~tpdGgF~~-Rs~vq~fvqd-------------~~~P~il~n~--~NeyLhyqddWyIl~~k~~~~~~d~~lvYYrG~nd 310 (455)
T PLN02372 247 NTPDGGFFT-RSAVQRFVQD-------------PNQPGILYNH--DNEYLHYQDDWYILSSKIENKPDDYVFVYYRGRND 310 (455)
T ss_pred ecCCCceEe-ecceeeeecc-------------CCCCceEEcC--CcceeecccceEEeeccccCCCCCeEEEEeccccc
Confidence 456776532 222222 110 1235554422 111111 4577899887765 999985432
Q ss_pred ----CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCCCCc
Q 019361 245 ----KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCE 287 (342)
Q Consensus 245 ----~~~lWILSRtp~Ls~e~lek~~~~l~~~G~D~skLi~t~QsC~ 287 (342)
..-+.+++|++.++++.+.++...+++.|++-++|+.++.+|.
T Consensus 311 AwdgYgGAVvyTrs~~lP~~~~p~L~~Aa~kvG~df~~F~~tDNsCg 357 (455)
T PLN02372 311 AWDGYGGAVVYTRSSTLPESIVPELEKAAKKVGRDFSDFVRTDNTCG 357 (455)
T ss_pred ccccccceEEEecCCCCChhhhHHHHHHHHHcCCCHHHheeeCCCCC
Confidence 2346899999999999999999999999999999999999994
No 10
>PF11032 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs). ApoM is important in the formation of pre-ss-HDL and also in increasing cholesterol efflux from macrophage foam cells []. Lipoproteins consist of lipids solubilized by apolipoproteins. ApoM lacks an external amphipathic motif and is uniquely secreted to plasma without cleavage of its terminal signal peptide []. ; PDB: 2XKL_A 2WEX_A 2YG2_B 2WEW_A.
Probab=97.42 E-value=0.0037 Score=57.45 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=26.7
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCCC---Cccc
Q 019361 245 KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQD---CEVI 289 (342)
Q Consensus 245 ~~~lWILSRtp~Ls~e~lek~~~~l~~~G~D~skLi~t~Qs---C~~~ 289 (342)
...+.+|||++.++++.+++|++.++=+|+. |..+|++ |++.
T Consensus 141 ~~rllLysR~~~~~~~~lEeFk~q~~Cl~~~---~l~~p~~~~~C~~~ 185 (186)
T PF11032_consen 141 YQRLLLYSRSPKLEEEELEEFKAQTECLGFK---FLLTPRQQEACKLE 185 (186)
T ss_dssp EEEEEEEESSSS--HHHHHHHHHHHHHTT-----EEE----S------
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHhhhccCcE---EEECccccCcCccC
Confidence 3457799999999999999999999999997 7777663 8763
No 11
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=47.02 E-value=12 Score=26.73 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=23.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCC
Q 019361 250 IYSRTPTPGPEFIEKYKSYLANFGYDPN 277 (342)
Q Consensus 250 ILSRtp~Ls~e~lek~~~~l~~~G~D~s 277 (342)
+|...+.++++..+++.+.++++||-++
T Consensus 19 ~ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 19 VLNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 3555678999999999999999999763
No 12
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=45.71 E-value=46 Score=35.97 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=32.9
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCCC
Q 019361 246 SFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQD 285 (342)
Q Consensus 246 ~~lWILSRtp~Ls~e~lek~~~~l~~~G~D~skLi~t~Qs 285 (342)
+.+||+.-. ..+++.+.+++.+++.|++.++|++.+..
T Consensus 460 Svl~L~~~~--~~~~~~~~l~~la~~~Gv~~eRL~f~p~~ 497 (620)
T COG3914 460 SVLLLKAGG--DDAEINARLRDLAEREGVDSERLRFLPPA 497 (620)
T ss_pred cEEEEecCC--CcHHHHHHHHHHHHHcCCChhheeecCCC
Confidence 678888876 45889999999999999999999998753
No 13
>PRK11678 putative chaperone; Provisional
Probab=37.87 E-value=72 Score=33.05 Aligned_cols=63 Identities=22% Similarity=0.250 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCCCCcEEcCCCCcccChHHHHHHhcccchhhhhhccCCCCcccCccccCCcchhHHHHHHHHHhhh
Q 019361 263 EKYKSYLANFGYDPNKIKDTPQDCEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTSVLDTLKKLLELYF 340 (342)
Q Consensus 263 ek~~~~l~~~G~D~skLi~t~QsC~~~s~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (342)
+.+.+.+++.|+.++.++.+--++ .||++++.|.+.||...+. .-|||+||-.-|.--.+.-|
T Consensus 387 ~~i~~~L~~a~~~~d~VvLvGGsS------------riP~V~~~l~~~fg~~~v~---~g~~~~sVa~Gla~~a~~~~ 449 (450)
T PRK11678 387 ELVQLALDQAQVKPDVIYLTGGSA------------RSPLIRAALAQQLPGIPIV---GGDDFGSVTAGLARWAQVVF 449 (450)
T ss_pred HHHHHHHHHcCCCCCEEEEcCccc------------chHHHHHHHHHHCCCCcEE---eCCCcchHHHHHHHHHHhhc
Confidence 334455666777655554443322 5789999999999885544 57999999987765554433
No 14
>PF11423 Repressor_Mnt: Regulatory protein Mnt; InterPro: IPR024421 Mnt is a repressor which is involved in the genetic switch between lysogenic and lytic growth in bacteriophage P22. The C-terminal domain of the protein consists of a dimer of two antiparallel coiled coils with a right handed twist, which is both stronger and has closer inter-helical separation compared with those found in left-handed coiled coils []. This entry is represented by Bacteriophage P22, Mnt. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 1QEY_C 1MNT_B.
Probab=32.36 E-value=34 Score=22.57 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=7.8
Q ss_pred hhHHHHHHHH
Q 019361 327 SVLDTLKKLL 336 (342)
Q Consensus 327 ~~~~~~~~~~ 336 (342)
-||||||.+.
T Consensus 18 ~VfetLK~~Y 27 (30)
T PF11423_consen 18 MVFETLKDMY 27 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3899999864
No 15
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=31.03 E-value=24 Score=29.95 Aligned_cols=13 Identities=38% Similarity=1.058 Sum_probs=10.5
Q ss_pred cCCccceEEEEee
Q 019361 124 VRYSGRWFEVASL 136 (342)
Q Consensus 124 ~RY~G~WYEIAr~ 136 (342)
..|.|.||||+..
T Consensus 39 ~ly~GeWFEI~e~ 51 (111)
T PF07215_consen 39 ALYAGEWFEITEA 51 (111)
T ss_pred cccccccEEecch
Confidence 4599999999643
No 16
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=29.13 E-value=62 Score=32.46 Aligned_cols=64 Identities=16% Similarity=0.267 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEcCCC----Cc--ccChHHHHHHhcccchhhhhhccCCCCcccCccccCCcch
Q 019361 258 GPEFIEKYKSYLANFGYDPNKIKDTPQD----CE--VISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 327 (342)
Q Consensus 258 s~e~lek~~~~l~~~G~D~skLi~t~Qs----C~--~~s~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
+-+.+.+..+.+.+.|+.-=.|.-++.. +. +..+..+... -++|++.||+|.+-..|.++||||
T Consensus 57 s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~~~g~v~ra------ir~iK~~~p~l~vi~DVcLc~YT~ 126 (323)
T PRK09283 57 SIDLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYNPDGLVQRA------IRAIKKAFPELGVITDVCLDEYTS 126 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccCCCCHHHHH------HHHHHHhCCCcEEEEeeeccCCCC
Confidence 3455666666777889864334334321 11 2233333322 346899999999999999999998
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.83 E-value=91 Score=34.47 Aligned_cols=35 Identities=26% Similarity=0.667 Sum_probs=28.6
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCC
Q 019361 246 SFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ 284 (342)
Q Consensus 246 ~~lWILSRtp~Ls~e~lek~~~~l~~~G~D~skLi~t~Q 284 (342)
+.+|+| |-|-..+ +.++.++.++|++++++++++-
T Consensus 789 S~Lwll-rfPa~ge---~rf~ty~~~~Gl~p~riifs~v 823 (966)
T KOG4626|consen 789 SVLWLL-RFPAVGE---QRFRTYAEQLGLEPDRIIFSPV 823 (966)
T ss_pred ceeEEE-eccccch---HHHHHHHHHhCCCccceeeccc
Confidence 567877 6666665 7889999999999999998763
No 18
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=25.80 E-value=80 Score=31.55 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEcCCC----Cc--ccChHHHHHHhcccchhhhhhccCCCCcccCccccCCcch
Q 019361 258 GPEFIEKYKSYLANFGYDPNKIKDTPQD----CE--VISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 327 (342)
Q Consensus 258 s~e~lek~~~~l~~~G~D~skLi~t~Qs----C~--~~s~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
+-+.+.+..+.+.+.|+.-=.|.-++.. .. +..+..+.. .-.+|++.||+|.+-..|.++||||
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~v~~------air~iK~~~p~l~vi~DvcLc~YT~ 118 (314)
T cd00384 49 SVDSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDGIVQR------AIRAIKEAVPELVVITDVCLCEYTD 118 (314)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCChHHH------HHHHHHHhCCCcEEEEeeeccCCCC
Confidence 3455666666777889864333333321 11 212222222 2246899999999999999999997
No 19
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=24.82 E-value=90 Score=31.29 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEcCCC---Cc------ccChHHHHHHhcccchhhhhhccCCCCcccCccccCCcch
Q 019361 258 GPEFIEKYKSYLANFGYDPNKIKDTPQD---CE------VISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 327 (342)
Q Consensus 258 s~e~lek~~~~l~~~G~D~skLi~t~Qs---C~------~~s~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
+-+.+.+..+.+.+.|+.-=.|.-++.+ .+ +..+..+...+ ++|++.||||.+-..|.++||||
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~ai------r~iK~~~pdl~vi~Dvclc~YT~ 121 (320)
T cd04824 49 GVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAI------KLIREEFPELLIACDVCLCEYTS 121 (320)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHH------HHHHHhCCCcEEEEeeeccCCCC
Confidence 3455666666777889864434334321 11 22333333333 36899999999999999999997
No 20
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=23.96 E-value=82 Score=31.60 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEcCCC----Cc--ccChHHHHHHhcccchhhhhhccCCCCcccCccccCCcch
Q 019361 258 GPEFIEKYKSYLANFGYDPNKIKDTPQD----CE--VISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 327 (342)
Q Consensus 258 s~e~lek~~~~l~~~G~D~skLi~t~Qs----C~--~~s~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
+-+.+.+..+.+.+.|+.-=.|.-++.. +. +..+..+...+ .+|++.||+|.+-..|.++|||+
T Consensus 59 sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~ai------r~iK~~~pdl~vi~DVcLc~YT~ 128 (322)
T PRK13384 59 PESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLARMV------RTIKAAVPEMMVIPDICFCEYTD 128 (322)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHHHHH------HHHHHHCCCeEEEeeeecccCCC
Confidence 3455666667777889864333333321 11 22223333222 36899999999999999999997
No 21
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=23.37 E-value=4.3e+02 Score=21.86 Aligned_cols=94 Identities=22% Similarity=0.189 Sum_probs=49.7
Q ss_pred CccCCccceEEEEeecccccCCCCCCceeeEEEEEEeCCCCcEEEEEeEEecCCCCcEEEEeeEEEEcCchhhhhhhhhh
Q 019361 122 DPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDL 201 (342)
Q Consensus 122 DL~RY~G~WYEIAr~p~~Fe~~~e~~~~CvtA~Ytl~~~dG~I~V~ns~~~~~~dG~~~~i~G~a~~v~~~~~~~~~~~~ 201 (342)
|++|..|+|..++.-.+.-+-. .... ....+++. .+.+.|... ++.. ..|.... ++.
T Consensus 3 dl~~LqG~W~~v~~e~~G~~~~--~~~~-~~~~~~~~--g~~~~~~~~------~~~~--~~~~~~L-d~~--------- 59 (107)
T TIGR03067 3 DLEKLQGTWKVVAAEKGGKAVP--ADKG-DRLVWTFK--GDKLTVKDG------EGDQ--GKGTFKL-DPA--------- 59 (107)
T ss_pred hHHhhCcEEEEEEEEeCCCcCC--hhhh-cceEEEEe--CCEEEEEcC------CCcc--eeEEEEE-CCC---------
Confidence 6889999999997644322110 0111 11456666 356666431 1221 2455443 221
Q ss_pred ccccccccEEEEecCCCCCCCCCCeEEEEEcCCcEEEEEec
Q 019361 202 EKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGA 242 (342)
Q Consensus 202 ~~q~~~~gkl~V~F~~~pf~p~~dYwVLdTDYdnYAIVysc 242 (342)
..|-++.+.....|.......-|...|=|..-|.++-
T Consensus 60 ----~~Pk~id~~~~~g~~~g~~~~gIY~l~gd~L~vC~~~ 96 (107)
T TIGR03067 60 ----ANPKTIDLTSPDGPDKGKTIKGIYKLDGDTLTVCFSG 96 (107)
T ss_pred ----CCccEEEEEccCCCCCCCEEEEEEEEcCCEEEEEECC
Confidence 2355666665434443334567777777777777654
No 22
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=20.79 E-value=1.3e+02 Score=20.81 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 019361 253 RTPTPGPEFIEKYKSYLANFG 273 (342)
Q Consensus 253 Rtp~Ls~e~lek~~~~l~~~G 273 (342)
..|.+|++..+..++.|+++|
T Consensus 15 ~NPnvSeeaK~~A~~~Le~~g 35 (36)
T PF10346_consen 15 HNPNVSEEAKQHAREKLEEMG 35 (36)
T ss_pred cCCCcCHHHHHHHHHHHHHcc
Confidence 468899999999999999876
Done!