BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019362
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%)
Query: 254 WCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKN 313
WCVPK G+SD QL +++YACSQGIDC PIQPGGACFEPNTV +HAA+ MNLYYQ + +N
Sbjct: 13 WCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRN 72
Query: 314 PWNCDFSKTATLTSQNPSYNGCVYPSG 340
WNCDFS+TATLT+ NPSY C +PSG
Sbjct: 73 SWNCDFSQTATLTNTNPSYGACNFPSG 99
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 112/190 (58%), Gaps = 7/190 (3%)
Query: 32 IKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPE 91
IKVST +A S PPS+G F + M + + L G+P N YP+FAY+ +P
Sbjct: 122 IKVSTSIRFDEVANSFPPSAGVF-KNAYMTDVARLLASTGAPLLANVYPYFAYRDNPGSI 180
Query: 92 TLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDP 151
+L + FQP D G+ Y ++FDA VDAV++AL G V++VV+E+GWP G
Sbjct: 181 SLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAGG- 239
Query: 152 NEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAFERSFGLF 211
S NA+ YN LI H+ GTP ++++TYIFA+++E+ K G A ERSFGLF
Sbjct: 240 --FAASAGNARTYNQGLINHVG--GGTP-KKREALETYIFAMFNENQKTGDATERSFGLF 294
Query: 212 KPDLSAAYDV 221
PD S AY++
Sbjct: 295 NPDKSPAYNI 304
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 113/199 (56%), Gaps = 10/199 (5%)
Query: 28 LGGKIKVSTVHAMSVLAQSDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFFAYQ 85
L +IKVST +L + PP F + + I+ FL H P N YP+F +
Sbjct: 125 LQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFGHI 184
Query: 86 SDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGW 145
+ L++ LF R D+G Y N+FDA VD+++ A +G +++EI+V+E+GW
Sbjct: 185 DNTNAVPLSYALFNQQR-RNDTG----YQNLFDALVDSMYFATEKLGGQNIEIIVSESGW 239
Query: 146 PYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAFE 205
P G P +++NA+ Y NLI H++ AGTP PGK+++TY+FA++DE+ K G A E
Sbjct: 240 PSEGHP---AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASE 296
Query: 206 RSFGLFKPDLSAAYDVGIS 224
+ FGLF PD Y + +
Sbjct: 297 KHFGLFNPDQRPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 112/199 (56%), Gaps = 10/199 (5%)
Query: 28 LGGKIKVSTVHAMSVLAQSDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFFAYQ 85
L +IKVST +L + PP F + + I+ FL H P N YP+F +
Sbjct: 125 LQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFGHI 184
Query: 86 SDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGW 145
+ L++ LF R D+G Y N+FDA VD+++ A +G +++EI+V+ +GW
Sbjct: 185 DNTNAVPLSYALFNQQR-RNDTG----YQNLFDALVDSMYFATEKLGGQNIEIIVSASGW 239
Query: 146 PYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAFE 205
P G P +++NA+ Y NLI H++ AGTP PGK+++TY+FA++DE+ K G A E
Sbjct: 240 PSEGHP---AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASE 296
Query: 206 RSFGLFKPDLSAAYDVGIS 224
+ FGLF PD Y + +
Sbjct: 297 KHFGLFNPDQRPKYQLNFN 315
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 114/196 (58%), Gaps = 8/196 (4%)
Query: 28 LGGKIKVSTVHAMSVLAQSDPPSSGSF--IRQDTMRGILQFLKDHGSPFTINPYPFFAYQ 85
L +IKVST VL S PPS+G+F Q + I+QFL +G+P +N YP+F+Y
Sbjct: 121 LQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYT 180
Query: 86 SDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGW 145
+P +L + LF + V G Y N+FDA VDAV +AL +G +V +VV+E+GW
Sbjct: 181 GNPGQISLPYALFTASGVVVQDGR-FSYQNLFDAIVDAVFAALERVGGANVAVVVSESGW 239
Query: 146 PYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAFE 205
P G E S NA+ YN NLI H+ GTP PGK ++ YIF +++E+ K G E
Sbjct: 240 PSAGGGAEA--STSNAQTYNQNLIRHVG--GGTPRRPGKEIEAYIFEMFNENQKAG-GIE 294
Query: 206 RSFGLFKPDLSAAYDV 221
++FGLF P+ Y +
Sbjct: 295 QNFGLFYPNKQPVYQI 310
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 117/202 (57%), Gaps = 15/202 (7%)
Query: 28 LGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRG----ILQFLKDHGSPFTINPYPFFA 83
L +IKVST ++++ S PPS+G+F +D +R I++FL SP N YP+F
Sbjct: 125 LQDQIKVSTAIDLTLVGNSYPPSAGAF--RDDVRSYLNPIIRFLSSIRSPLLANIYPYFT 182
Query: 84 YQSDPRPETLAFCLF-QPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAE 142
Y +PR +L + LF P+ D G Y N+FDA +DA++SAL +E+VV+E
Sbjct: 183 YAGNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGGSLEVVVSE 240
Query: 143 TGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGP 202
+GWP G + +N + Y NLI H++ GTP P ++++TY+FA++DE+ K P
Sbjct: 241 SGWPSAG---AFAATFDNGRTYLSNLIQHVKR--GTPKRPKRAIETYLFAMFDEN-KKQP 294
Query: 203 AFERSFGLFKPDLSAAYDVGIS 224
E+ FGLF P+ Y++ S
Sbjct: 295 EVEKHFGLFFPNKWQKYNLNFS 316
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 10/194 (5%)
Query: 30 GKIKVSTVHAMSVLAQSDPPSSGSFIRQDT--MRGILQFLKDHGSPFTINPYPFFAYQSD 87
G IKV+T + ++L PPS+GSF + M ++QFL +P N YP+ A+ +
Sbjct: 119 GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYN 178
Query: 88 PRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPY 147
P + + LF + V G Y N+FD VDA ++A+ G V++VV+E+GWP
Sbjct: 179 PSAMDMGYALFNASGTVVRDGA-YGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPS 237
Query: 148 RGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAFERS 207
G + NA+ YN +LI H+ GTP PG +++TYIFA+++E+ K E++
Sbjct: 238 GGG---TAATPANARFYNQHLINHVGR--GTPRHPG-AIETYIFAMFNENQKD-SGVEQN 290
Query: 208 FGLFKPDLSAAYDV 221
+GLF P++ Y +
Sbjct: 291 WGLFYPNMQHVYPI 304
>pdb|2YGT|A Chain A, Clostridium Perfringens Delta-Toxin
Length = 298
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 255 CVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKN- 313
VPK IS ++ ++ Y+ GID S A N VS + + Y T N
Sbjct: 111 SVPKNTISTKEVNNTISYSIGGGIDTS----NKASLNANYAVSKSISYVQPDYNTIQTND 166
Query: 314 -----PWNCDFSKT 322
WN +F++T
Sbjct: 167 TNSIASWNTEFAET 180
>pdb|3CMB|A Chain A, Crystal Structure Of Acetoacetate Decarboxylase
(Yp_001047042.1) From Methanoculleus Marisnigri Jr1 At
1.60 A Resolution
pdb|3CMB|B Chain B, Crystal Structure Of Acetoacetate Decarboxylase
(Yp_001047042.1) From Methanoculleus Marisnigri Jr1 At
1.60 A Resolution
pdb|3CMB|C Chain C, Crystal Structure Of Acetoacetate Decarboxylase
(Yp_001047042.1) From Methanoculleus Marisnigri Jr1 At
1.60 A Resolution
pdb|3CMB|D Chain D, Crystal Structure Of Acetoacetate Decarboxylase
(Yp_001047042.1) From Methanoculleus Marisnigri Jr1 At
1.60 A Resolution
Length = 283
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 280 CSPIQPGGACFEPNTVVSHAAFAMNLYYQTS 310
P+ GG F+P T+V+ A A++L ++T
Sbjct: 30 LXPVHFGGGKFDPETLVTQKATALSLSFETE 60
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 117 FDAQVDAVHSALNAMGFKDVEIV 139
D QV A+ AL+A GFKD I+
Sbjct: 167 MDGQVQAIRQALDAAGFKDTAIM 189
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 117 FDAQVDAVHSALNAMGFKDVEIV 139
D QV A+ AL+A GFKD I+
Sbjct: 167 MDGQVQAIRQALDAAGFKDTAIM 189
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
Length = 323
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 117 FDAQVDAVHSALNAMGFKDVEIV 139
D QV A+ AL+A GFKD I+
Sbjct: 167 MDGQVQAIRQALDAAGFKDTAIM 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,453,463
Number of Sequences: 62578
Number of extensions: 365702
Number of successful extensions: 699
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 16
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)