Query 019365
Match_columns 342
No_of_seqs 174 out of 496
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hyg_A Putative uncharacterize 100.0 3.2E-31 1.1E-35 250.2 14.0 171 141-314 104-297 (301)
2 2kr6_A Presenilin-1; protease, 96.7 0.0016 5.6E-08 57.4 4.9 66 233-306 88-156 (176)
3 3h4p_A Proteasome subunit alph 21.8 23 0.0008 32.3 0.6 23 217-239 149-173 (264)
4 3aq2_A 6B protein; miRNA machi 19.2 18 0.00062 32.1 -0.7 19 309-327 151-173 (207)
5 1pp9_G Ubiquinol-cytochrome C 17.7 1.2E+02 0.0041 23.2 3.7 36 283-318 36-71 (81)
6 1pw4_A Glycerol-3-phosphate tr 17.0 1.7E+02 0.0057 26.6 5.4 6 269-274 166-171 (451)
7 3tgu_G UQCRQ, mitochondrial ub 16.7 1.5E+02 0.005 22.7 4.0 35 285-319 38-72 (81)
8 3bbo_G Ribosomal protein L4; l 16.4 30 0.001 32.7 0.0 11 205-215 187-197 (293)
9 3qnq_A PTS system, cellobiose- 13.9 69 0.0023 31.7 1.8 83 260-342 345-442 (442)
10 3dh4_A Sodium/glucose cotransp 12.1 5.6E+02 0.019 25.2 8.0 91 239-342 403-493 (530)
No 1
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.97 E-value=3.2e-31 Score=250.23 Aligned_cols=171 Identities=24% Similarity=0.302 Sum_probs=130.2
Q ss_pred hHHhhhhhHHHHHHhhccchhhHhhHHHHHHHHH--hhhhcccCchhhHHHHHHHHHHhhhheeeccchhhhhhcc---C
Q 019365 141 QIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQ--GIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS---F 215 (342)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~W~l~nilgi~~~~~--~i~~i~l~s~k~~~iLL~~lf~YDif~VF~T~vMvtVA~~---~ 215 (342)
..++.+.+.+++.+++.+++|+.+|+.|+++|.. ++..++++.+ .+.+||++|++||++|||+|+||+++|++ .
T Consensus 104 ~~~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtLAegvmdl 182 (301)
T 4hyg_A 104 AAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITLAEGVLET 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHHHHhhhcc
Confidence 3456667888888889999999999999999975 5677788998 69999999999999999999999999999 6
Q ss_pred CCCEEEEeecc--------------CCCCCceeccCCCccchhHHhhhHhhhcccCCC----CcchHHHHHHHHHHHHHH
Q 019365 216 DAPIKLLFPTR--------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGK----GSRYFKSAFLGYTVGLVL 277 (342)
Q Consensus 216 ~~Pikl~~P~~--------------~~~~~~s~LGlGDIviPGi~ia~~lRfD~~~~~----~~~YF~~s~igY~~GL~~ 277 (342)
|.|+++++|+. +.+|+..++|+||+|+|+++++.+.|||.++.. +-+ +..+++|+.+|+.+
T Consensus 183 k~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA~~Gt~~Gl~v 261 (301)
T 4hyg_A 183 KAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGAMVGSLVGLAV 261 (301)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHHHHHHHHHHHH
Confidence 89999999983 235788899999999999999999999975431 123 78999999999999
Q ss_pred HHHHHHHhCCCccchhhhhhHHHHHHHHHHHHhhhHH
Q 019365 278 TIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVK 314 (342)
Q Consensus 278 t~~~~~~~~~~QPALLYLvP~~l~~~~~~A~~rgEl~ 314 (342)
++.... ++++||+|+||+++++++.++.|+.+||++
T Consensus 262 Ll~~V~-~grpqaGLP~LN~GaI~Gfllg~l~~G~~~ 297 (301)
T 4hyg_A 262 LLYFVN-KGNPQAGLPPLNGGAILGFLVGAALAGSFS 297 (301)
T ss_dssp HHHHHT-SSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHH-cCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence 976332 799999999999999999999999999986
No 2
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=96.67 E-value=0.0016 Score=57.42 Aligned_cols=66 Identities=29% Similarity=0.459 Sum_probs=54.3
Q ss_pred eeccCCCccchhHHhhhHh--h-hcccCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhhhHHHHHHHHH
Q 019365 233 SMLGLGDIVIPGIFVALAL--R-FDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAH 306 (342)
Q Consensus 233 s~LGlGDIviPGi~ia~~l--R-fD~~~~~~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLvP~~l~~~~~~ 306 (342)
--|||||-|+=+++++-+. + .|. .=..+|++|..+||.+|...+.+++++-|||. +|..+|.+...
T Consensus 88 ikLGLGDFIFYSvLVgkAa~~~~~d~------~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALP--iSI~lG~~fyf 156 (176)
T 2kr6_A 88 VKLGLGDFIFYSVLVGKASATASGDW------NTTIACFVAILIGLCLTLLLLAIFKKALPALP--ISITFGLVFYF 156 (176)
T ss_dssp CSSCTTTHHHHHHHHHHHHHHSCCTT------TTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSS--SCCCCHHHHHH
T ss_pred ccccccCeeehHHHHHHHHHhhccCH------HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc--HHHHHHHHHHH
Confidence 4599999999999999886 4 343 34578999999999999999999999999998 66666655443
No 3
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=21.82 E-value=23 Score=32.33 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=11.9
Q ss_pred CCEEEEe-eccC-CCCCceeccCCC
Q 019365 217 APIKLLF-PTRD-TARPFSMLGLGD 239 (342)
Q Consensus 217 ~Pikl~~-P~~~-~~~~~s~LGlGD 239 (342)
.|-...+ |.+. ...++.-.|-|.
T Consensus 149 gp~Ly~iDp~G~~~~~~~~aiGsgs 173 (264)
T 3h4p_A 149 EARLFETDPSGALIEYKATAIGSGR 173 (264)
T ss_dssp EEEEEEECTTCCCEEESEEEESTTH
T ss_pred cCEEEEECCCceEEecCeEEECCCH
Confidence 4655555 3331 123566678774
No 4
>3aq2_A 6B protein; miRNA machineries, toxin, ADP-ribosylation fold; 1.65A {Agrobacterium vitis} PDB: 3aq3_A
Probab=19.22 E-value=18 Score=32.13 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=12.0
Q ss_pred HhhhHHHhh----cccccccccc
Q 019365 309 WNGEVKQLL----EFDESKTAAV 327 (342)
Q Consensus 309 ~rgEl~~lw----~~~~~~~~~~ 327 (342)
.+||=+.+| ||.|+.|+++
T Consensus 151 i~gesy~fyaR~gny~ee~e~~~ 173 (207)
T 3aq2_A 151 IRGQGYGWYARQGNYVEEGEDNE 173 (207)
T ss_dssp ETTEEEEEEEESTTCCCCCC---
T ss_pred ecCcccceeeccCccccccccCc
Confidence 567888888 6777776555
No 5
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=17.75 E-value=1.2e+02 Score=23.16 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=28.0
Q ss_pred HHhCCCccchhhhhhHHHHHHHHHHHHhhhHHHhhc
Q 019365 283 NWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLE 318 (342)
Q Consensus 283 ~~~~~~QPALLYLvP~~l~~~~~~A~~rgEl~~lw~ 318 (342)
..+++-+-..+|++|..+++-++..|.+.+...+-+
T Consensus 36 n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~r 71 (81)
T 1pp9_G 36 NVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKR 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhC
Confidence 344555566779999999999999999988877644
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=17.03 E-value=1.7e+02 Score=26.64 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.3
Q ss_pred HHHHHH
Q 019365 269 LGYTVG 274 (342)
Q Consensus 269 igY~~G 274 (342)
+|.++|
T Consensus 166 ~g~~~g 171 (451)
T 1pw4_A 166 VGGGIP 171 (451)
T ss_dssp HHHTSH
T ss_pred HHHHHH
Confidence 333333
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=16.71 E-value=1.5e+02 Score=22.69 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=27.5
Q ss_pred hCCCccchhhhhhHHHHHHHHHHHHhhhHHHhhcc
Q 019365 285 FQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEF 319 (342)
Q Consensus 285 ~~~~QPALLYLvP~~l~~~~~~A~~rgEl~~lw~~ 319 (342)
+++-+-..+|.+|..+++-.+..|.+.+...+-+-
T Consensus 38 ~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 38 WRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44555668999999999999999998888776543
No 8
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=16.42 E-value=30 Score=32.74 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=5.1
Q ss_pred cchhhhhhccC
Q 019365 205 TPVMVSVAKSF 215 (342)
Q Consensus 205 T~vMvtVA~~~ 215 (342)
|.-++.+-+.+
T Consensus 187 TK~~~~~Lk~l 197 (293)
T 3bbo_G 187 TKDFIAAMQRW 197 (293)
T ss_dssp SHHHHTTHHHH
T ss_pred HHHHHHHHHHc
Confidence 44555554443
No 9
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=13.92 E-value=69 Score=31.69 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhCCCccc---hhhhhhHHHHHHHHHHH-HhhhHHHhhcccccc----------cc
Q 019365 260 GSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPA---LLYIVPAVIGFLAAHCI-WNGEVKQLLEFDESK----------TA 325 (342)
Q Consensus 260 ~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPA---LLYLvP~~l~~~~~~A~-~rgEl~~lw~~~~~~----------~~ 325 (342)
+..|+..-+++-+++.+++.+++..-=.+.|. .....|..+.+.+.+.. .|+=+-++-..--+. |+
T Consensus 345 Np~~~iPfi~~~~~~~~~~~~~~~~g~~~~~~~~~vpw~tP~~i~~~l~t~g~~~~~il~~~~~~i~~~iy~PF~k~~dk 424 (442)
T 3qnq_A 345 NPLLLIPFIVVPVVLTIVSYFAMEWGLVARPSGAAVTWTTPILFSGYLGSGGKISGVILQLVNFALAFVIYLPFLKIWDK 424 (442)
T ss_dssp CSSTHHHHHHHHHHHHHHHHHHHHTTSSCCCCCCCCCTTSCHHHHHHHTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcccCcccccccCCCCccHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccc-ccccccccccC
Q 019365 326 AVVSQE-SGDAKTSKKVE 342 (342)
Q Consensus 326 ~~~~~~-~~~~~~~~~~~ 342 (342)
++.+|| +.+++|.+|.|
T Consensus 425 ~~~~~E~~~~~~~~~~~~ 442 (442)
T 3qnq_A 425 QKIAEEKGEAAAENLYFQ 442 (442)
T ss_dssp HHHHHHHTCC--------
T ss_pred HHHHHHHHHHHhhhhccC
No 10
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=12.12 E-value=5.6e+02 Score=25.22 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred CccchhHHhhhHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHHHhhhHHHhhc
Q 019365 239 DIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLE 318 (342)
Q Consensus 239 DIviPGi~ia~~lRfD~~~~~~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLvP~~l~~~~~~A~~rgEl~~lw~ 318 (342)
.+.-|+++..+.+..=-.|..+ ..++.|-+.|++++....... ..-|.+-..+|..+.+....-. -+
T Consensus 403 g~~~~~~~~~~llgl~wkr~~~----~gA~~g~i~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~--------vS 469 (530)
T 3dh4_A 403 GLVSPGILAVFLLGLFWKKTTS----KGAIIGVVASIPFALFLKFMP-LSMPFMDQMLYTLLFTMVVIAF--------TS 469 (530)
T ss_dssp TTTHHHHHHHHHHHHHCTTCCH----HHHHHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHHHHHHHHHHH--------HH
T ss_pred HHHhHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHHHHHHHHHHH--------HH
Q ss_pred cccccccccccccccccccccccC
Q 019365 319 FDESKTAAVVSQESGDAKTSKKVE 342 (342)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ 342 (342)
.-..++++|+++.+.+.++-|..+
T Consensus 470 l~t~~~~~~~~~~~~~~~~~~~~~ 493 (530)
T 3dh4_A 470 LSTSINDDDPKGISVTSSMFVTDR 493 (530)
T ss_dssp HTTCSSSSCTTCCCCCCSCCCCCT
T ss_pred hhcCCCcccccccccchhhccCcc
Done!