Query 019365
Match_columns 342
No_of_seqs 174 out of 496
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 14:58:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019365.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019365hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 31.2 29 0.0021 29.3 5.4 8 288-295 181-188 (447)
2 d1bvyf_ c.23.5.1 (F:) FMN-bind 8.7 49 0.0036 25.3 1.0 28 229-256 83-110 (152)
3 d1q90g_ f.23.26.1 (G:) PetG su 5.9 1.9E+02 0.014 16.5 2.4 15 295-309 13-27 (30)
4 d1ja1a2 c.23.5.2 (A:63-239) NA 5.7 63 0.0046 25.6 0.2 26 229-255 103-128 (177)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 5.4 1.1E+02 0.0083 17.3 1.1 12 190-201 12-23 (30)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 5.2 3E+02 0.022 19.0 3.9 7 235-241 55-61 (103)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 5.1 1.9E+02 0.014 17.1 2.0 14 187-200 14-27 (34)
8 d1vl6a2 c.58.1.3 (A:1-154) Mal 4.9 95 0.0069 24.6 0.8 11 231-241 66-76 (154)
9 d1ppjg_ f.23.13.1 (G:) Ubiquin 4.6 3E+02 0.022 18.8 3.3 27 290-316 43-69 (75)
10 d1kqfc_ f.21.1.1 (C:) Formate 4.5 1.5E+02 0.011 23.3 1.7 78 262-339 113-214 (216)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=31.16 E-value=29 Score=29.31 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=3.0
Q ss_pred Cccchhhh
Q 019365 288 AQPALLYI 295 (342)
Q Consensus 288 ~QPALLYL 295 (342)
++....++
T Consensus 181 ~w~~~~~~ 188 (447)
T d1pw4a_ 181 DWHAALYM 188 (447)
T ss_dssp CSTTCTHH
T ss_pred cccccchh
Confidence 33333333
No 2
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=8.68 E-value=49 Score=25.34 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=22.7
Q ss_pred CCCceeccCCCccchhHHhhhHhhhccc
Q 019365 229 ARPFSMLGLGDIVIPGIFVALALRFDVS 256 (342)
Q Consensus 229 ~~~~s~LGlGDIviPGi~ia~~lRfD~~ 256 (342)
..+|+++|+||---|=-|......+|..
T Consensus 83 ~~~~aV~GlGds~Y~~~fc~~~~~ld~~ 110 (152)
T d1bvyf_ 83 GVRYSVFGCGDKNWATTYQKVPAFIDET 110 (152)
T ss_dssp TCCEEEEEEECTTSGGGTTHHHHHHHHH
T ss_pred CceeeeeeccccchhhhhhhHHHHHHHH
Confidence 4689999999998887777777777753
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.95 E-value=1.9e+02 Score=16.48 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHH
Q 019365 295 IVPAVIGFLAAHCIW 309 (342)
Q Consensus 295 LvP~~l~~~~~~A~~ 309 (342)
++|.++.+.+.+|+.
T Consensus 13 lipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 13 LVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 478888888888764
No 4
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.70 E-value=63 Score=25.59 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=19.3
Q ss_pred CCCceeccCCCccchhHHhhhHhhhcc
Q 019365 229 ARPFSMLGLGDIVIPGIFVALALRFDV 255 (342)
Q Consensus 229 ~~~~s~LGlGDIviPGi~ia~~lRfD~ 255 (342)
..+|+++|+||---| -|...+.++|.
T Consensus 103 ~~~yaVfGlGds~Y~-~Fc~a~~~l~~ 128 (177)
T d1ja1a2 103 GVKFAVFGLGNKTYE-HFNAMGKYVDQ 128 (177)
T ss_dssp TCEEEEEEEECSSSS-STTHHHHHHHH
T ss_pred CceEEEEecCCccHH-HHHHHHHHHHH
Confidence 468999999998776 46666666654
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.38 E-value=1.1e+02 Score=17.27 Aligned_cols=12 Identities=33% Similarity=0.874 Sum_probs=8.7
Q ss_pred HHHHHHHhhhhe
Q 019365 190 LLAGLFVYDIFW 201 (342)
Q Consensus 190 LL~~lf~YDif~ 201 (342)
-+++||++.|||
T Consensus 12 c~i~lfffaiff 23 (30)
T d2axtt1 12 CIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 456788888875
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.18 E-value=3e+02 Score=18.99 Aligned_cols=7 Identities=43% Similarity=1.018 Sum_probs=6.2
Q ss_pred ccCCCcc
Q 019365 235 LGLGDIV 241 (342)
Q Consensus 235 LGlGDIv 241 (342)
.|.||++
T Consensus 55 vGYGDi~ 61 (103)
T d1r3jc_ 55 VGYGDLY 61 (103)
T ss_dssp CCCSSSC
T ss_pred cccCccc
Confidence 7999987
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.07 E-value=1.9e+02 Score=17.07 Aligned_cols=14 Identities=43% Similarity=1.077 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhh
Q 019365 187 GAILLAGLFVYDIF 200 (342)
Q Consensus 187 ~~iLL~~lf~YDif 200 (342)
+.+-+.++|+|-.+
T Consensus 14 ~vi~~vG~FfYGsY 27 (34)
T d2axtj1 14 GVIVIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hhHhheeeeeeeee
Confidence 56677888988765
No 8
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=4.93 E-value=95 Score=24.60 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=8.9
Q ss_pred CceeccCCCcc
Q 019365 231 PFSMLGLGDIV 241 (342)
Q Consensus 231 ~~s~LGlGDIv 241 (342)
+-+.||||||=
T Consensus 66 GtaVLGLGniG 76 (154)
T d1vl6a2 66 GSAVLGLGNIG 76 (154)
T ss_dssp STTBTTTBSCC
T ss_pred CceeecCCCcc
Confidence 45789999985
No 9
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.57 E-value=3e+02 Score=18.80 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=20.3
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhHHHh
Q 019365 290 PALLYIVPAVIGFLAAHCIWNGEVKQL 316 (342)
Q Consensus 290 PALLYLvP~~l~~~~~~A~~rgEl~~l 316 (342)
--.+|++|-.+++-++..|...|..++
T Consensus 43 ~~~l~v~PPfi~~Y~iy~W~~~~~~~~ 69 (75)
T d1ppjg_ 43 ACILRVAPPFVAFYLVYTWGTQEFEKS 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhceEEcCHHHHHHHHHHHHHHHHHHH
Confidence 346888999999888888877665543
No 10
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=4.51 E-value=1.5e+02 Score=23.30 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------chhhhhhHHHHHHHHHHHHhhhHHHhhcccccccc-
Q 019365 262 RYFKSAFLGYTVGLVLTIIVMNWFQAAQP---------------ALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTA- 325 (342)
Q Consensus 262 ~YF~~s~igY~~GL~~t~~~~~~~~~~QP---------------ALLYLvP~~l~~~~~~A~~rgEl~~lw~~~~~~~~- 325 (342)
...+.++..-.+.+++|-+++..-...++ +-..++=.+++=+......+|.++.|.++..++|+
T Consensus 113 kl~~~~~~~~~~~~~~TGl~l~~~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy~a~~~~~~l~~M~tG~v~~~~~ 192 (216)
T d1kqfc_ 113 KMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWA 192 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHTCEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhheeeccHHHH
Q ss_pred --------cccccccccccccc
Q 019365 326 --------AVVSQESGDAKTSK 339 (342)
Q Consensus 326 --------~~~~~~~~~~~~~~ 339 (342)
+|.++++.+.|+||
T Consensus 193 ~~~h~~w~~~~~~~~~~~~~~~ 214 (216)
T d1kqfc_ 193 KKHHPRWYREIEKAEAKKESEE 214 (216)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCccccc
Done!