Query 019366
Match_columns 342
No_of_seqs 65 out of 67
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 08:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2991 Splicing regulator [RN 100.0 4.5E-95 1E-99 681.8 29.8 324 9-339 6-329 (330)
2 TIGR02169 SMC_prok_A chromosom 98.1 0.00035 7.5E-09 74.8 21.6 64 248-311 863-926 (1164)
3 PF00038 Filament: Intermediat 98.0 0.005 1.1E-07 58.0 24.2 222 60-314 52-288 (312)
4 TIGR02168 SMC_prok_B chromosom 98.0 0.0076 1.7E-07 64.3 27.2 64 248-311 868-931 (1179)
5 PRK02224 chromosome segregatio 97.9 0.011 2.3E-07 63.2 27.1 185 119-314 252-445 (880)
6 TIGR02169 SMC_prok_A chromosom 97.9 0.0036 7.8E-08 67.2 23.0 34 64-97 676-709 (1164)
7 COG1196 Smc Chromosome segrega 97.5 0.017 3.6E-07 64.7 22.7 126 183-313 789-916 (1163)
8 PRK11637 AmiB activator; Provi 97.4 0.11 2.4E-06 52.0 24.2 58 251-308 196-253 (428)
9 PF09726 Macoilin: Transmembra 97.4 0.1 2.2E-06 56.4 25.1 221 74-320 423-661 (697)
10 KOG0161 Myosin class II heavy 97.2 0.12 2.6E-06 61.3 25.8 225 65-313 1332-1558(1930)
11 PF12128 DUF3584: Protein of u 97.1 0.085 1.8E-06 59.5 21.8 145 66-211 604-756 (1201)
12 TIGR00606 rad50 rad50. This fa 97.0 0.33 7.1E-06 55.3 25.5 67 248-314 972-1040(1311)
13 TIGR03007 pepcterm_ChnLen poly 97.0 0.5 1.1E-05 47.6 25.2 122 190-316 250-383 (498)
14 COG1196 Smc Chromosome segrega 96.9 0.39 8.4E-06 54.1 24.9 193 115-313 299-499 (1163)
15 PRK02224 chromosome segregatio 96.9 0.52 1.1E-05 50.7 24.9 16 84-99 170-185 (880)
16 PF00261 Tropomyosin: Tropomyo 96.8 0.35 7.6E-06 45.1 19.9 217 64-312 3-228 (237)
17 KOG0612 Rho-associated, coiled 96.7 0.46 1E-05 54.3 23.5 78 225-302 569-651 (1317)
18 PRK03918 chromosome segregatio 96.7 1.2 2.5E-05 47.8 27.5 47 122-168 235-281 (880)
19 PRK11637 AmiB activator; Provi 96.7 0.82 1.8E-05 45.8 26.2 50 248-297 207-256 (428)
20 PHA02562 46 endonuclease subun 96.5 1.1 2.4E-05 45.3 26.1 27 71-97 176-202 (562)
21 KOG4674 Uncharacterized conser 96.5 0.77 1.7E-05 54.5 23.9 171 123-316 1097-1285(1822)
22 PF13514 AAA_27: AAA domain 96.5 1.7 3.7E-05 48.8 25.9 97 67-171 678-775 (1111)
23 TIGR00606 rad50 rad50. This fa 96.4 0.69 1.5E-05 52.7 22.7 137 146-293 792-928 (1311)
24 PF15070 GOLGA2L5: Putative go 96.3 0.49 1.1E-05 50.6 19.7 178 128-312 32-219 (617)
25 KOG0999 Microtubule-associated 96.3 0.88 1.9E-05 48.9 21.1 150 65-247 39-190 (772)
26 KOG4643 Uncharacterized coiled 96.3 1.9 4E-05 49.0 24.3 247 64-316 186-537 (1195)
27 PF10174 Cast: RIM-binding pro 96.2 2.6 5.7E-05 46.5 27.3 41 61-101 127-167 (775)
28 TIGR00634 recN DNA repair prot 96.1 0.72 1.6E-05 47.9 19.7 43 176-219 260-302 (563)
29 PF14662 CCDC155: Coiled-coil 96.1 1.3 2.8E-05 41.5 21.8 184 115-313 5-190 (193)
30 PF05701 WEMBL: Weak chloropla 96.0 2.4 5.1E-05 44.3 25.0 25 75-99 210-234 (522)
31 PF05701 WEMBL: Weak chloropla 95.9 2.6 5.6E-05 43.9 25.5 69 248-316 283-351 (522)
32 PHA02562 46 endonuclease subun 95.9 0.55 1.2E-05 47.5 17.3 44 125-168 167-210 (562)
33 KOG0963 Transcription factor/C 95.8 1.4 3.1E-05 47.4 20.2 207 66-284 193-435 (629)
34 TIGR03017 EpsF chain length de 95.8 2.3 4.9E-05 42.1 25.4 121 177-315 248-369 (444)
35 KOG0996 Structural maintenance 95.7 1.4 3E-05 50.6 20.6 197 116-316 825-1026(1293)
36 PRK09039 hypothetical protein; 95.7 0.95 2.1E-05 44.9 17.5 150 146-311 46-199 (343)
37 PF13514 AAA_27: AAA domain 95.5 5.7 0.00012 44.8 24.8 62 62-125 550-612 (1111)
38 PF10174 Cast: RIM-binding pro 95.5 5.3 0.00011 44.2 27.6 34 72-106 70-103 (775)
39 TIGR01005 eps_transp_fam exopo 95.5 4.4 9.5E-05 43.3 26.5 206 71-315 196-403 (754)
40 KOG0971 Microtubule-associated 95.2 4.9 0.00011 45.6 22.4 114 190-316 420-546 (1243)
41 KOG0996 Structural maintenance 95.2 5.9 0.00013 45.7 23.3 42 127-168 801-842 (1293)
42 PF05557 MAD: Mitotic checkpoi 95.2 0.024 5.1E-07 60.4 4.9 220 76-314 305-536 (722)
43 KOG0977 Nuclear envelope prote 95.2 1.4 3.1E-05 46.8 17.5 250 52-313 101-388 (546)
44 COG4942 Membrane-bound metallo 95.2 4.7 0.0001 41.8 24.6 202 71-300 33-250 (420)
45 KOG0161 Myosin class II heavy 95.2 8.8 0.00019 46.4 25.5 229 63-316 937-1174(1930)
46 PF09730 BicD: Microtubule-ass 95.1 1.7 3.7E-05 47.6 18.3 101 134-252 22-122 (717)
47 KOG4677 Golgi integral membran 95.1 4.1 8.8E-05 43.0 20.1 22 142-163 234-255 (554)
48 PF07888 CALCOCO1: Calcium bin 95.0 5.7 0.00012 42.5 21.5 24 190-213 209-232 (546)
49 PF12128 DUF3584: Protein of u 95.0 4.9 0.00011 45.8 22.2 146 141-298 390-535 (1201)
50 PRK04863 mukB cell division pr 94.9 8.9 0.00019 45.3 24.3 89 227-315 383-483 (1486)
51 PF09726 Macoilin: Transmembra 94.8 3.1 6.7E-05 45.3 19.4 174 116-304 430-610 (697)
52 KOG4674 Uncharacterized conser 94.8 12 0.00026 45.0 25.2 130 69-216 654-788 (1822)
53 PF09787 Golgin_A5: Golgin sub 94.7 6.2 0.00013 41.0 21.8 237 75-315 108-382 (511)
54 KOG0933 Structural maintenance 94.7 6.3 0.00014 45.0 21.5 192 108-316 664-857 (1174)
55 PF04012 PspA_IM30: PspA/IM30 94.7 1.4 3.1E-05 40.0 14.2 175 63-260 31-217 (221)
56 KOG0250 DNA repair protein RAD 94.6 11 0.00024 43.2 23.9 86 223-308 372-463 (1074)
57 PRK03918 chromosome segregatio 94.5 8.4 0.00018 41.4 29.9 20 196-215 565-584 (880)
58 KOG0963 Transcription factor/C 94.4 7.6 0.00016 42.1 20.7 117 190-309 148-270 (629)
59 KOG0977 Nuclear envelope prote 94.4 8.4 0.00018 41.2 21.3 93 119-211 29-137 (546)
60 TIGR03007 pepcterm_ChnLen poly 94.4 6.5 0.00014 39.7 20.3 208 92-304 106-347 (498)
61 PF03915 AIP3: Actin interacti 94.3 0.66 1.4E-05 47.8 12.4 187 56-279 60-272 (424)
62 TIGR01843 type_I_hlyD type I s 94.3 5.3 0.00012 38.5 19.6 26 288-313 246-271 (423)
63 PF05483 SCP-1: Synaptonemal c 94.2 9.2 0.0002 42.2 20.9 191 62-284 356-551 (786)
64 PRK01156 chromosome segregatio 94.2 10 0.00022 41.3 24.8 12 151-162 592-603 (895)
65 cd09237 V_ScBro1_like Protein- 94.2 6.3 0.00014 38.8 22.5 204 55-273 66-288 (356)
66 PF08614 ATG16: Autophagy prot 93.8 0.48 1E-05 42.9 9.3 61 249-309 112-172 (194)
67 PF00038 Filament: Intermediat 93.8 6.1 0.00013 37.4 24.5 81 223-303 165-252 (312)
68 PRK09039 hypothetical protein; 93.7 8 0.00017 38.4 20.3 38 228-270 138-175 (343)
69 PF13851 GAS: Growth-arrest sp 93.7 4.5 9.7E-05 37.4 15.4 96 188-288 28-128 (201)
70 KOG0964 Structural maintenance 93.7 14 0.0003 42.4 21.5 129 74-209 676-807 (1200)
71 KOG4593 Mitotic checkpoint pro 93.6 14 0.0003 40.7 24.4 234 75-316 68-320 (716)
72 PF04849 HAP1_N: HAP1 N-termin 93.4 9.3 0.0002 38.2 18.7 26 220-245 160-185 (306)
73 PRK10884 SH3 domain-containing 93.4 1.8 3.8E-05 40.5 12.5 89 177-313 83-171 (206)
74 KOG0933 Structural maintenance 93.4 18 0.0004 41.5 23.4 149 139-310 773-921 (1174)
75 PF08614 ATG16: Autophagy prot 93.4 0.55 1.2E-05 42.5 8.9 64 246-309 116-179 (194)
76 KOG0018 Structural maintenance 93.3 4.6 0.0001 46.1 17.4 182 107-298 641-838 (1141)
77 TIGR02680 conserved hypothetic 93.3 20 0.00043 41.8 24.8 23 70-92 743-765 (1353)
78 PRK04863 mukB cell division pr 93.2 23 0.0005 42.0 28.1 99 216-314 489-598 (1486)
79 TIGR01000 bacteriocin_acc bact 93.1 11 0.00024 38.1 20.7 24 288-311 291-314 (457)
80 PF12718 Tropomyosin_1: Tropom 93.0 4.6 0.0001 35.6 13.7 102 190-314 3-106 (143)
81 PF05667 DUF812: Protein of un 92.9 14 0.0003 39.8 19.7 32 178-211 387-418 (594)
82 PF14662 CCDC155: Coiled-coil 92.8 8.1 0.00017 36.4 15.7 129 144-290 6-139 (193)
83 PRK11281 hypothetical protein; 92.8 23 0.0005 40.9 22.1 167 133-302 74-255 (1113)
84 PF12325 TMF_TATA_bd: TATA ele 92.7 3 6.4E-05 36.2 12.0 98 183-295 13-110 (120)
85 PRK11281 hypothetical protein; 92.7 23 0.00051 40.8 23.6 23 75-97 86-108 (1113)
86 PF06160 EzrA: Septation ring 92.5 16 0.00034 38.6 22.4 216 65-312 204-424 (560)
87 smart00806 AIP3 Actin interact 92.4 13 0.00029 38.7 18.0 135 153-305 155-320 (426)
88 PF15397 DUF4618: Domain of un 92.3 12 0.00026 36.6 19.9 19 82-100 62-80 (258)
89 PRK10869 recombination and rep 92.2 18 0.00038 38.2 19.1 109 180-303 258-370 (553)
90 PF05911 DUF869: Plant protein 92.1 21 0.00046 39.7 20.2 162 127-318 591-763 (769)
91 PF01576 Myosin_tail_1: Myosin 92.1 0.043 9.3E-07 60.1 0.0 219 64-297 273-505 (859)
92 KOG0995 Centromere-associated 92.0 15 0.00032 39.7 18.3 87 191-298 284-370 (581)
93 KOG0978 E3 ubiquitin ligase in 92.0 23 0.0005 39.1 23.3 113 186-308 509-621 (698)
94 PF09730 BicD: Microtubule-ass 91.8 24 0.00052 39.0 20.9 194 105-315 244-467 (717)
95 TIGR01010 BexC_CtrB_KpsE polys 91.8 14 0.00029 36.2 21.0 122 109-245 138-267 (362)
96 COG1340 Uncharacterized archae 91.6 16 0.00034 36.5 22.2 189 66-310 59-250 (294)
97 PF12777 MT: Microtubule-bindi 91.4 16 0.00034 36.1 19.6 106 68-183 14-132 (344)
98 PF11559 ADIP: Afadin- and alp 91.3 3.5 7.7E-05 35.6 11.0 85 228-312 60-150 (151)
99 PF05557 MAD: Mitotic checkpoi 90.8 4.2 9E-05 43.7 13.1 32 285-316 603-634 (722)
100 PF04156 IncA: IncA protein; 90.7 5.5 0.00012 35.3 11.8 16 149-164 91-106 (191)
101 PF15070 GOLGA2L5: Putative go 90.1 31 0.00067 37.4 25.8 172 65-241 25-216 (617)
102 PRK04778 septation ring format 90.1 28 0.0006 36.7 22.9 225 60-312 196-428 (569)
103 PF13851 GAS: Growth-arrest sp 90.1 16 0.00034 33.9 18.3 100 129-243 31-130 (201)
104 PF04912 Dynamitin: Dynamitin 89.9 23 0.00049 35.5 21.0 21 143-163 206-226 (388)
105 PF12325 TMF_TATA_bd: TATA ele 89.8 11 0.00023 32.9 12.4 105 53-168 7-111 (120)
106 COG1842 PspA Phage shock prote 89.7 11 0.00024 35.8 13.7 142 64-207 33-186 (225)
107 PF04111 APG6: Autophagy prote 89.7 5.1 0.00011 39.4 11.7 123 73-210 5-129 (314)
108 COG1579 Zn-ribbon protein, pos 89.5 21 0.00046 34.5 19.1 25 190-214 62-86 (239)
109 PF10046 BLOC1_2: Biogenesis o 89.5 3.5 7.6E-05 34.0 8.9 72 228-304 22-96 (99)
110 KOG0243 Kinesin-like protein [ 89.3 9 0.00019 43.8 14.5 43 248-290 450-492 (1041)
111 COG2433 Uncharacterized conser 89.2 3.9 8.4E-05 44.3 11.1 59 52-117 246-305 (652)
112 PRK04406 hypothetical protein; 89.1 2.8 6.1E-05 33.6 7.8 53 263-315 7-59 (75)
113 PF04111 APG6: Autophagy prote 89.1 7 0.00015 38.5 12.2 127 184-315 6-133 (314)
114 TIGR03185 DNA_S_dndD DNA sulfu 89.1 34 0.00075 36.4 26.6 70 223-292 394-467 (650)
115 PF15397 DUF4618: Domain of un 89.0 24 0.00052 34.5 22.8 44 272-315 177-220 (258)
116 TIGR03185 DNA_S_dndD DNA sulfu 88.8 36 0.00078 36.3 25.6 83 181-271 385-467 (650)
117 PF05622 HOOK: HOOK protein; 88.3 0.32 7E-06 52.0 2.6 70 224-299 288-357 (713)
118 TIGR01005 eps_transp_fam exopo 88.1 41 0.00089 36.1 20.4 190 109-304 162-368 (754)
119 PF05008 V-SNARE: Vesicle tran 87.8 3.3 7.2E-05 31.9 7.4 57 257-313 22-79 (79)
120 TIGR02977 phageshock_pspA phag 87.8 19 0.00041 33.3 13.6 173 63-261 32-216 (219)
121 KOG0946 ER-Golgi vesicle-tethe 87.8 54 0.0012 37.2 18.8 152 154-312 700-865 (970)
122 PF07888 CALCOCO1: Calcium bin 87.7 44 0.00096 36.0 25.6 25 292-316 361-385 (546)
123 PF05911 DUF869: Plant protein 87.7 52 0.0011 36.8 21.7 177 128-317 27-212 (769)
124 PF08317 Spc7: Spc7 kinetochor 87.7 30 0.00064 33.9 26.2 92 224-316 188-290 (325)
125 PF14197 Cep57_CLD_2: Centroso 87.5 7.1 0.00015 30.9 9.1 64 250-313 2-65 (69)
126 PF10186 Atg14: UV radiation r 87.5 23 0.00051 32.6 16.2 22 189-210 22-43 (302)
127 PF04156 IncA: IncA protein; 87.3 20 0.00044 31.7 14.4 61 251-311 128-188 (191)
128 PF12718 Tropomyosin_1: Tropom 87.3 20 0.00044 31.6 16.2 85 123-210 16-103 (143)
129 PF15619 Lebercilin: Ciliary p 87.2 25 0.00054 32.6 16.6 164 66-242 16-186 (194)
130 PRK00295 hypothetical protein; 87.2 4.9 0.00011 31.5 7.9 36 279-314 17-52 (68)
131 PF05622 HOOK: HOOK protein; 87.1 0.19 4E-06 53.7 0.0 49 120-168 241-289 (713)
132 PRK10884 SH3 domain-containing 86.8 4 8.6E-05 38.2 8.5 62 249-313 96-157 (206)
133 KOG0612 Rho-associated, coiled 86.7 74 0.0016 37.5 20.1 13 25-37 390-402 (1317)
134 PRK01156 chromosome segregatio 86.7 54 0.0012 35.9 27.4 72 69-140 416-491 (895)
135 PRK02119 hypothetical protein; 86.6 4.6 0.0001 32.1 7.6 49 266-314 8-56 (73)
136 KOG0976 Rho/Rac1-interacting s 86.3 68 0.0015 36.7 22.5 109 195-307 260-384 (1265)
137 smart00787 Spc7 Spc7 kinetocho 86.2 38 0.00081 33.7 15.6 92 224-316 183-285 (312)
138 PRK10929 putative mechanosensi 85.8 77 0.0017 36.8 22.6 36 133-168 59-94 (1109)
139 PRK10698 phage shock protein P 85.4 26 0.00056 32.9 13.2 141 62-205 31-184 (222)
140 COG0216 PrfA Protein chain rel 85.0 18 0.00038 37.1 12.5 94 223-316 3-104 (363)
141 PF04102 SlyX: SlyX; InterPro 84.9 4.3 9.3E-05 31.6 6.6 37 279-315 16-52 (69)
142 PF14817 HAUS5: HAUS augmin-li 84.9 33 0.00071 37.4 15.3 94 183-288 300-393 (632)
143 PF09789 DUF2353: Uncharacteri 84.6 34 0.00074 34.4 14.3 185 24-270 38-227 (319)
144 PRK02793 phi X174 lysis protei 84.5 6.3 0.00014 31.2 7.5 45 271-315 12-56 (72)
145 PF06008 Laminin_I: Laminin Do 84.5 36 0.00079 32.1 23.5 102 192-312 125-240 (264)
146 PF10186 Atg14: UV radiation r 84.4 34 0.00073 31.6 19.6 142 142-317 16-159 (302)
147 KOG1853 LIS1-interacting prote 84.4 13 0.00029 36.9 11.1 31 247-277 92-122 (333)
148 PF08317 Spc7: Spc7 kinetochor 84.3 44 0.00095 32.8 19.7 61 249-309 219-290 (325)
149 PRK00736 hypothetical protein; 84.0 3.4 7.3E-05 32.4 5.7 34 280-313 18-51 (68)
150 PRK00736 hypothetical protein; 83.8 8.7 0.00019 30.1 7.9 48 245-299 4-51 (68)
151 PF11559 ADIP: Afadin- and alp 83.7 26 0.00056 30.3 11.6 71 246-316 59-129 (151)
152 PF05667 DUF812: Protein of un 83.6 71 0.0015 34.6 17.2 155 147-316 322-482 (594)
153 PF00769 ERM: Ezrin/radixin/mo 83.4 12 0.00026 35.7 10.1 117 190-311 8-126 (246)
154 PF10211 Ax_dynein_light: Axon 83.3 34 0.00073 31.5 12.7 148 127-312 39-187 (189)
155 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.2 29 0.00062 29.8 14.6 37 177-213 49-85 (132)
156 PRK04325 hypothetical protein; 83.0 11 0.00023 30.0 8.3 46 269-314 11-56 (74)
157 KOG1962 B-cell receptor-associ 83.0 15 0.00032 35.2 10.5 80 230-312 130-210 (216)
158 KOG0250 DNA repair protein RAD 83.0 1E+02 0.0022 35.9 26.0 49 263-311 390-438 (1074)
159 COG2433 Uncharacterized conser 82.6 38 0.00082 37.1 14.5 94 139-273 415-508 (652)
160 PF07798 DUF1640: Protein of u 82.6 25 0.00055 31.5 11.5 87 210-299 11-98 (177)
161 PF06785 UPF0242: Uncharacteri 82.6 11 0.00024 38.5 10.1 92 220-313 68-173 (401)
162 PF09787 Golgin_A5: Golgin sub 82.6 59 0.0013 34.0 15.6 132 188-322 117-259 (511)
163 TIGR02231 conserved hypothetic 82.6 15 0.00032 38.0 11.2 34 181-214 65-98 (525)
164 PF10473 CENP-F_leu_zip: Leuci 82.6 36 0.00077 30.5 16.9 97 142-282 20-116 (140)
165 KOG4593 Mitotic checkpoint pro 82.5 87 0.0019 34.9 25.0 219 71-316 239-489 (716)
166 TIGR02680 conserved hypothetic 82.1 1.1E+02 0.0024 35.9 20.1 21 190-210 810-830 (1353)
167 PF04849 HAP1_N: HAP1 N-termin 81.9 60 0.0013 32.6 21.2 91 186-286 212-302 (306)
168 PF09755 DUF2046: Uncharacteri 81.8 61 0.0013 32.7 19.7 89 68-163 40-130 (310)
169 KOG0978 E3 ubiquitin ligase in 81.7 92 0.002 34.6 19.9 23 281-303 461-483 (698)
170 PF04012 PspA_IM30: PspA/IM30 81.3 42 0.00092 30.5 15.6 59 174-242 15-73 (221)
171 TIGR03017 EpsF chain length de 81.1 61 0.0013 32.2 24.7 178 108-300 138-330 (444)
172 COG1382 GimC Prefoldin, chaper 80.7 22 0.00047 31.2 9.9 45 272-316 68-112 (119)
173 PLN03229 acetyl-coenzyme A car 80.6 76 0.0017 35.5 16.1 89 137-235 421-519 (762)
174 PF13166 AAA_13: AAA domain 80.4 83 0.0018 33.3 19.6 42 273-314 430-471 (712)
175 PF10481 CENP-F_N: Cenp-F N-te 80.4 55 0.0012 32.9 13.6 70 191-265 43-114 (307)
176 PF09738 DUF2051: Double stran 80.2 14 0.0003 36.7 9.7 67 249-315 101-167 (302)
177 KOG4673 Transcription factor T 80.0 1.1E+02 0.0024 34.5 24.8 59 253-311 704-762 (961)
178 PRK10929 putative mechanosensi 79.4 1.3E+02 0.0029 35.0 25.9 31 71-101 60-90 (1109)
179 PF06120 Phage_HK97_TLTM: Tail 79.4 48 0.001 33.1 13.1 70 58-133 70-139 (301)
180 PF10211 Ax_dynein_light: Axon 79.4 40 0.00086 31.0 11.7 58 256-313 123-181 (189)
181 PRK09841 cryptic autophosphory 79.1 53 0.0011 35.6 14.4 121 70-206 268-389 (726)
182 PF14282 FlxA: FlxA-like prote 79.1 12 0.00025 31.5 7.6 61 252-315 18-78 (106)
183 COG3883 Uncharacterized protei 79.1 13 0.00027 36.6 8.9 63 249-311 41-103 (265)
184 PF05529 Bap31: B-cell recepto 78.9 13 0.00028 33.4 8.3 68 247-314 119-187 (192)
185 KOG0994 Extracellular matrix g 78.9 1.5E+02 0.0033 35.4 20.0 41 261-301 1571-1611(1758)
186 PRK00846 hypothetical protein; 78.8 17 0.00036 29.7 8.1 36 280-315 26-61 (77)
187 PF06005 DUF904: Protein of un 78.6 12 0.00026 29.8 7.2 16 226-241 17-32 (72)
188 COG3883 Uncharacterized protei 78.6 14 0.0003 36.4 8.9 68 249-316 27-94 (265)
189 PF06548 Kinesin-related: Kine 78.5 65 0.0014 34.3 14.2 157 152-309 228-469 (488)
190 PF06248 Zw10: Centromere/kine 78.2 43 0.00092 35.2 13.1 59 183-242 10-68 (593)
191 KOG1899 LAR transmembrane tyro 78.2 53 0.0011 36.5 13.8 31 189-222 190-220 (861)
192 COG1842 PspA Phage shock prote 77.9 66 0.0014 30.7 15.1 47 114-160 27-73 (225)
193 PF14197 Cep57_CLD_2: Centroso 77.8 18 0.00039 28.6 7.9 66 231-301 2-67 (69)
194 PF12761 End3: Actin cytoskele 77.8 19 0.0004 34.1 9.2 98 188-308 97-194 (195)
195 KOG2751 Beclin-like protein [S 77.5 77 0.0017 33.4 14.3 136 72-216 138-276 (447)
196 PF06818 Fez1: Fez1; InterPro 77.1 69 0.0015 30.5 17.2 36 130-172 15-50 (202)
197 cd09236 V_AnPalA_UmRIM20_like 76.6 83 0.0018 31.2 22.6 194 62-272 78-291 (353)
198 cd09235 V_Alix Middle V-domain 76.5 82 0.0018 31.1 20.7 195 59-272 73-277 (339)
199 PRK04778 septation ring format 76.2 1.1E+02 0.0024 32.4 24.9 147 112-265 120-294 (569)
200 PF10473 CENP-F_leu_zip: Leuci 75.9 59 0.0013 29.1 13.0 95 192-296 22-116 (140)
201 PF00261 Tropomyosin: Tropomyo 75.9 69 0.0015 29.9 22.0 219 68-310 14-233 (237)
202 PRK04406 hypothetical protein; 75.7 17 0.00036 29.2 7.3 46 246-298 11-56 (75)
203 cd08915 V_Alix_like Protein-in 75.4 84 0.0018 30.7 23.8 194 63-273 78-281 (342)
204 PF05010 TACC: Transforming ac 75.4 75 0.0016 30.1 19.6 173 123-316 7-189 (207)
205 PF06156 DUF972: Protein of un 75.4 14 0.0003 31.5 7.1 47 269-315 10-56 (107)
206 PF04065 Not3: Not1 N-terminal 75.3 81 0.0018 30.4 13.6 118 191-315 42-190 (233)
207 PF12795 MscS_porin: Mechanose 75.2 71 0.0015 29.7 19.4 169 133-303 32-214 (240)
208 TIGR02231 conserved hypothetic 75.0 27 0.00058 36.1 10.4 99 60-165 69-171 (525)
209 KOG4643 Uncharacterized coiled 74.9 1.8E+02 0.0038 34.1 19.6 27 188-214 223-249 (1195)
210 PF04102 SlyX: SlyX; InterPro 74.8 15 0.00032 28.7 6.6 47 246-299 4-50 (69)
211 PRK10698 phage shock protein P 74.7 76 0.0016 29.8 14.9 33 170-202 12-46 (222)
212 TIGR01010 BexC_CtrB_KpsE polys 74.5 90 0.0019 30.5 14.4 127 71-210 172-301 (362)
213 PRK02119 hypothetical protein; 74.1 21 0.00045 28.4 7.3 47 246-299 9-55 (73)
214 KOG1962 B-cell receptor-associ 74.0 43 0.00093 32.1 10.7 48 250-297 162-209 (216)
215 PF13094 CENP-Q: CENP-Q, a CEN 73.9 30 0.00064 30.4 9.0 81 208-303 4-84 (160)
216 PF01920 Prefoldin_2: Prefoldi 73.3 43 0.00092 26.5 9.1 41 273-313 61-101 (106)
217 PRK04325 hypothetical protein; 73.2 23 0.00049 28.2 7.4 46 247-299 10-55 (74)
218 PF15294 Leu_zip: Leucine zipp 73.0 1E+02 0.0022 30.6 19.2 110 182-306 127-247 (278)
219 PF00769 ERM: Ezrin/radixin/mo 72.9 89 0.0019 29.8 13.3 32 273-304 95-126 (246)
220 cd00632 Prefoldin_beta Prefold 72.6 52 0.0011 27.0 10.4 40 274-313 63-102 (105)
221 PF15035 Rootletin: Ciliary ro 72.6 66 0.0014 29.7 11.3 26 187-212 16-41 (182)
222 TIGR02449 conserved hypothetic 72.2 17 0.00037 28.8 6.4 51 224-279 11-61 (65)
223 KOG0964 Structural maintenance 72.1 2E+02 0.0044 33.6 18.8 30 136-165 290-319 (1200)
224 PF07106 TBPIP: Tat binding pr 71.9 21 0.00046 31.5 7.7 24 162-196 7-30 (169)
225 PF14712 Snapin_Pallidin: Snap 71.9 38 0.00083 26.8 8.5 72 242-313 3-82 (92)
226 PF08826 DMPK_coil: DMPK coile 71.8 22 0.00048 27.8 6.9 46 115-160 15-60 (61)
227 PRK14127 cell division protein 71.7 13 0.00028 32.0 6.1 45 269-313 25-69 (109)
228 PRK02793 phi X174 lysis protei 71.7 24 0.00052 28.0 7.2 47 245-298 7-53 (72)
229 PRK00295 hypothetical protein; 71.6 28 0.0006 27.3 7.4 47 246-299 5-51 (68)
230 COG4372 Uncharacterized protei 71.5 1.4E+02 0.0031 31.6 25.5 43 116-165 107-149 (499)
231 PF07889 DUF1664: Protein of u 70.9 44 0.00095 29.5 9.3 54 246-299 68-121 (126)
232 PF14992 TMCO5: TMCO5 family 70.4 1.1E+02 0.0023 30.6 12.8 152 142-316 21-181 (280)
233 PRK03947 prefoldin subunit alp 70.4 68 0.0015 27.4 11.0 22 191-212 10-31 (140)
234 PF14282 FlxA: FlxA-like prote 70.3 52 0.0011 27.6 9.3 63 247-312 20-82 (106)
235 PF13166 AAA_13: AAA domain 70.1 1.5E+02 0.0033 31.3 18.8 49 265-313 408-456 (712)
236 TIGR03752 conj_TIGR03752 integ 69.5 40 0.00086 35.7 10.2 78 223-312 62-140 (472)
237 KOG4673 Transcription factor T 69.5 2E+02 0.0044 32.5 23.9 58 113-173 341-399 (961)
238 KOG1029 Endocytic adaptor prot 69.4 2.2E+02 0.0047 32.8 20.3 65 225-289 435-501 (1118)
239 PRK11519 tyrosine kinase; Prov 69.4 1.3E+02 0.0028 32.7 14.3 123 69-206 267-389 (719)
240 PRK10803 tol-pal system protei 69.1 21 0.00046 34.1 7.6 73 239-311 33-105 (263)
241 PRK09841 cryptic autophosphory 69.0 1.8E+02 0.0039 31.7 20.4 112 108-230 234-349 (726)
242 PF11802 CENP-K: Centromere-as 68.3 1.3E+02 0.0028 29.8 15.0 102 192-294 21-144 (268)
243 PF09728 Taxilin: Myosin-like 68.2 1.3E+02 0.0028 29.8 16.0 175 104-308 122-306 (309)
244 PRK00846 hypothetical protein; 68.1 31 0.00067 28.2 7.2 50 244-300 11-60 (77)
245 KOG0239 Kinesin (KAR3 subfamil 67.9 2E+02 0.0043 31.8 19.6 39 59-97 97-135 (670)
246 PF07926 TPR_MLP1_2: TPR/MLP1/ 67.9 78 0.0017 27.1 15.4 103 190-305 27-129 (132)
247 PF07106 TBPIP: Tat binding pr 67.8 25 0.00055 31.0 7.3 55 184-241 76-130 (169)
248 PLN02939 transferase, transfer 67.8 2E+02 0.0044 33.2 15.8 184 117-304 155-374 (977)
249 COG4026 Uncharacterized protei 67.6 38 0.00083 33.3 9.0 93 198-309 109-205 (290)
250 PF10146 zf-C4H2: Zinc finger- 67.4 1.2E+02 0.0026 29.1 13.7 57 258-314 48-108 (230)
251 PF05600 DUF773: Protein of un 67.3 1.8E+02 0.0038 30.9 15.6 48 190-242 449-497 (507)
252 PF12329 TMF_DNA_bd: TATA elem 66.6 64 0.0014 25.6 8.6 58 254-311 13-70 (74)
253 TIGR02977 phageshock_pspA phag 66.5 1.1E+02 0.0024 28.3 13.8 32 173-204 15-48 (219)
254 TIGR00618 sbcc exonuclease Sbc 66.4 2.3E+02 0.005 32.0 23.7 67 64-134 544-614 (1042)
255 PF05377 FlaC_arch: Flagella a 66.1 11 0.00023 29.2 4.0 30 247-276 8-37 (55)
256 PF11180 DUF2968: Protein of u 65.9 47 0.001 31.4 9.0 73 232-304 110-184 (192)
257 TIGR01843 type_I_hlyD type I s 65.7 1.3E+02 0.0029 29.0 21.9 85 80-166 78-164 (423)
258 COG4942 Membrane-bound metallo 65.4 1.8E+02 0.004 30.5 24.3 37 248-284 212-248 (420)
259 TIGR00255 conserved hypothetic 64.9 97 0.0021 30.6 11.3 102 132-245 142-266 (291)
260 PF09304 Cortex-I_coil: Cortex 64.7 56 0.0012 28.4 8.5 62 246-307 16-77 (107)
261 PF00170 bZIP_1: bZIP transcri 64.3 25 0.00054 26.4 5.7 36 266-301 25-60 (64)
262 TIGR02338 gimC_beta prefoldin, 64.1 84 0.0018 26.1 11.6 22 196-219 29-50 (110)
263 PF09744 Jnk-SapK_ap_N: JNK_SA 64.1 1.1E+02 0.0025 27.7 12.7 81 214-301 18-109 (158)
264 cd09238 V_Alix_like_1 Protein- 63.9 1.6E+02 0.0034 29.2 22.7 200 58-274 75-279 (339)
265 PF13815 Dzip-like_N: Iguana/D 63.7 37 0.0008 28.7 7.2 43 269-311 75-117 (118)
266 PRK09343 prefoldin subunit bet 63.6 95 0.0021 26.6 12.6 31 196-228 33-67 (121)
267 PF06657 Cep57_MT_bd: Centroso 63.5 57 0.0012 26.3 7.9 60 185-244 15-74 (79)
268 KOG2264 Exostosin EXT1L [Signa 63.0 27 0.00059 38.3 7.7 15 220-234 76-90 (907)
269 PF01576 Myosin_tail_1: Myosin 62.9 2.4 5.3E-05 46.8 0.0 245 61-313 341-620 (859)
270 PF10267 Tmemb_cc2: Predicted 62.7 1.1E+02 0.0025 31.6 11.8 29 186-214 211-239 (395)
271 PF12329 TMF_DNA_bd: TATA elem 62.2 60 0.0013 25.8 7.8 49 250-298 23-71 (74)
272 COG0419 SbcC ATPase involved i 62.1 2.6E+02 0.0057 31.2 26.6 34 118-151 586-619 (908)
273 smart00338 BRLZ basic region l 62.1 26 0.00056 26.4 5.5 36 275-310 27-62 (65)
274 PF10168 Nup88: Nuclear pore c 62.1 2.5E+02 0.0055 31.1 14.9 60 85-147 556-615 (717)
275 PF07544 Med9: RNA polymerase 62.0 40 0.00086 27.2 6.8 50 261-310 29-81 (83)
276 COG0497 RecN ATPase involved i 61.8 2.4E+02 0.0052 30.7 22.2 150 145-305 214-373 (557)
277 PF11365 DUF3166: Protein of u 61.1 1E+02 0.0022 26.2 9.4 43 126-169 2-45 (96)
278 PF09738 DUF2051: Double stran 60.0 1.1E+02 0.0023 30.6 10.7 108 180-320 72-179 (302)
279 PF05266 DUF724: Protein of un 59.4 1.1E+02 0.0024 28.4 10.1 55 249-303 127-181 (190)
280 PF05483 SCP-1: Synaptonemal c 59.2 3.1E+02 0.0066 31.0 22.6 56 262-317 337-392 (786)
281 PF10498 IFT57: Intra-flagella 58.8 2.1E+02 0.0046 29.1 16.8 88 74-168 189-288 (359)
282 COG1579 Zn-ribbon protein, pos 58.7 1.8E+02 0.004 28.2 17.0 66 240-305 83-148 (239)
283 PF06818 Fez1: Fez1; InterPro 58.4 1.7E+02 0.0037 27.9 12.2 21 275-295 132-152 (202)
284 PF03962 Mnd1: Mnd1 family; I 58.3 1.5E+02 0.0033 27.2 11.2 55 142-212 106-160 (188)
285 PF06156 DUF972: Protein of un 58.0 85 0.0018 26.8 8.4 49 270-318 4-52 (107)
286 PRK15422 septal ring assembly 58.0 72 0.0016 26.4 7.6 61 247-307 12-72 (79)
287 TIGR02338 gimC_beta prefoldin, 58.0 1.1E+02 0.0024 25.5 10.0 34 278-311 71-104 (110)
288 PRK11820 hypothetical protein; 57.5 1.5E+02 0.0031 29.3 11.1 102 132-245 140-263 (288)
289 PF09755 DUF2046: Uncharacteri 57.5 2.2E+02 0.0048 28.8 23.8 94 220-313 106-203 (310)
290 KOG0993 Rab5 GTPase effector R 57.3 2.7E+02 0.0059 29.8 18.3 53 112-164 135-187 (542)
291 PF10146 zf-C4H2: Zinc finger- 57.1 1.8E+02 0.0039 27.9 11.3 58 257-314 36-93 (230)
292 PF11544 Spc42p: Spindle pole 57.0 59 0.0013 26.7 7.0 52 265-316 3-54 (76)
293 PF11577 NEMO: NF-kappa-B esse 56.2 1E+02 0.0022 24.6 8.4 62 227-310 6-67 (68)
294 KOG3612 PHD Zn-finger protein 55.5 67 0.0014 34.9 8.9 79 173-263 418-499 (588)
295 COG4477 EzrA Negative regulato 55.2 3.2E+02 0.0068 29.9 17.8 86 228-318 348-434 (570)
296 PF05377 FlaC_arch: Flagella a 55.1 37 0.00081 26.3 5.2 37 247-283 1-37 (55)
297 cd00632 Prefoldin_beta Prefold 55.0 1.2E+02 0.0026 24.9 11.9 37 271-307 67-103 (105)
298 PF04912 Dynamitin: Dynamitin 54.7 2.4E+02 0.0052 28.3 13.6 32 104-136 81-112 (388)
299 PF00170 bZIP_1: bZIP transcri 54.7 89 0.0019 23.4 8.1 39 273-311 25-63 (64)
300 PRK13729 conjugal transfer pil 54.6 52 0.0011 34.9 7.9 43 269-311 78-120 (475)
301 COG4717 Uncharacterized conser 54.4 4E+02 0.0087 30.9 17.3 217 31-312 127-343 (984)
302 PF15619 Lebercilin: Ciliary p 54.0 1.9E+02 0.0041 27.0 22.0 19 193-211 88-106 (194)
303 PF00435 Spectrin: Spectrin re 53.9 89 0.0019 23.2 10.9 53 189-241 3-55 (105)
304 COG4026 Uncharacterized protei 53.9 2.1E+02 0.0045 28.4 11.2 38 247-284 171-208 (290)
305 PLN03188 kinesin-12 family pro 53.8 4.7E+02 0.01 31.5 21.7 85 224-308 1125-1238(1320)
306 KOG0979 Structural maintenance 53.7 4.3E+02 0.0093 31.0 21.5 49 268-316 312-360 (1072)
307 PF08580 KAR9: Yeast cortical 53.5 3.5E+02 0.0076 29.9 20.3 214 61-282 35-298 (683)
308 PF13334 DUF4094: Domain of un 53.2 22 0.00049 29.6 4.1 40 52-91 56-95 (95)
309 PF09304 Cortex-I_coil: Cortex 53.1 1.2E+02 0.0026 26.4 8.6 35 251-285 42-76 (107)
310 KOG1003 Actin filament-coating 52.6 2.2E+02 0.0048 27.4 15.1 128 184-311 8-146 (205)
311 PF10359 Fmp27_WPPW: RNA pol I 52.6 94 0.002 32.3 9.4 76 246-321 156-233 (475)
312 PF07246 Phlebovirus_NSM: Phle 52.6 54 0.0012 32.4 7.2 43 270-312 198-240 (264)
313 COG2900 SlyX Uncharacterized p 52.5 79 0.0017 25.8 6.9 47 244-297 6-52 (72)
314 PF14257 DUF4349: Domain of un 52.5 1.1E+02 0.0025 28.6 9.2 84 228-316 106-190 (262)
315 PF05529 Bap31: B-cell recepto 52.0 69 0.0015 28.8 7.4 66 144-209 116-183 (192)
316 PF06810 Phage_GP20: Phage min 51.9 1E+02 0.0022 27.6 8.4 47 259-305 26-75 (155)
317 PF02403 Seryl_tRNA_N: Seryl-t 51.9 1.3E+02 0.0028 24.5 8.7 72 141-212 24-99 (108)
318 PF15066 CAGE1: Cancer-associa 51.6 2.4E+02 0.0052 30.4 12.0 21 181-201 311-331 (527)
319 PF10392 COG5: Golgi transport 51.5 1.6E+02 0.0034 25.3 10.6 81 227-308 33-113 (132)
320 COG1561 Uncharacterized stress 51.4 2.7E+02 0.0058 28.0 12.3 125 132-271 142-288 (290)
321 KOG0243 Kinesin-like protein [ 51.0 4.7E+02 0.01 30.7 18.7 28 119-146 405-432 (1041)
322 PF05837 CENP-H: Centromere pr 50.8 1.5E+02 0.0032 24.9 10.8 52 155-213 33-84 (106)
323 PF10168 Nup88: Nuclear pore c 50.7 3.9E+02 0.0085 29.7 20.1 126 119-263 537-670 (717)
324 PF07334 IFP_35_N: Interferon- 50.6 44 0.00095 27.4 5.3 26 291-316 3-28 (76)
325 PF02403 Seryl_tRNA_N: Seryl-t 50.6 1.4E+02 0.0029 24.3 8.3 54 260-313 43-99 (108)
326 PF01920 Prefoldin_2: Prefoldi 50.5 1.2E+02 0.0027 23.9 8.1 80 131-210 4-85 (106)
327 COG1730 GIM5 Predicted prefold 50.2 78 0.0017 28.5 7.3 46 260-305 94-139 (145)
328 PF13815 Dzip-like_N: Iguana/D 49.7 89 0.0019 26.4 7.3 55 248-304 63-117 (118)
329 PF11932 DUF3450: Protein of u 49.5 2.3E+02 0.0049 26.6 12.3 83 191-283 25-107 (251)
330 KOG0995 Centromere-associated 49.5 3.9E+02 0.0085 29.3 21.0 97 215-316 405-506 (581)
331 PF09602 PhaP_Bmeg: Polyhydrox 49.4 1.5E+02 0.0032 27.6 9.1 56 258-313 46-103 (165)
332 PF10805 DUF2730: Protein of u 49.4 1.4E+02 0.0031 25.0 8.3 45 247-291 50-96 (106)
333 PF09727 CortBP2: Cortactin-bi 49.2 2.4E+02 0.0051 26.7 16.6 144 144-311 15-171 (192)
334 PF03961 DUF342: Protein of un 49.0 1.2E+02 0.0026 30.9 9.4 34 281-314 375-408 (451)
335 PF08372 PRT_C: Plant phosphor 49.0 44 0.00096 30.4 5.6 60 26-100 31-90 (156)
336 PF05700 BCAS2: Breast carcino 48.8 1.4E+02 0.0031 27.8 9.1 69 246-314 143-215 (221)
337 KOG3433 Protein involved in me 48.7 1.2E+02 0.0026 29.0 8.5 26 212-239 68-93 (203)
338 PRK13169 DNA replication intia 48.7 65 0.0014 27.8 6.3 45 269-313 10-54 (110)
339 KOG4571 Activating transcripti 48.7 34 0.00073 34.3 5.2 42 222-268 250-291 (294)
340 PF14931 IFT20: Intraflagellar 48.7 1.3E+02 0.0029 26.2 8.3 33 288-320 80-112 (120)
341 PF05103 DivIVA: DivIVA protei 48.2 16 0.00036 30.2 2.6 40 270-309 21-60 (131)
342 KOG4001 Axonemal dynein light 48.1 96 0.0021 30.2 7.9 64 224-298 189-252 (259)
343 PRK10803 tol-pal system protei 48.1 61 0.0013 31.1 6.8 18 273-290 60-77 (263)
344 KOG1655 Protein involved in va 48.1 2.7E+02 0.0058 27.0 15.8 35 134-168 21-55 (218)
345 KOG4360 Uncharacterized coiled 48.0 4.1E+02 0.0089 29.1 18.1 66 251-316 238-303 (596)
346 PF12795 MscS_porin: Mechanose 47.5 2.4E+02 0.0052 26.3 23.4 115 190-316 116-235 (240)
347 PRK00591 prfA peptide chain re 47.2 3.3E+02 0.0072 27.9 12.2 97 192-313 4-100 (359)
348 PF10212 TTKRSYEDQ: Predicted 47.1 98 0.0021 33.3 8.6 61 241-301 415-482 (518)
349 KOG0971 Microtubule-associated 47.0 5.4E+02 0.012 30.3 22.5 64 250-313 494-557 (1243)
350 COG3206 GumC Uncharacterized p 46.3 3.4E+02 0.0073 27.6 23.9 148 67-247 193-340 (458)
351 PRK15422 septal ring assembly 46.2 1.7E+02 0.0037 24.3 8.9 64 249-312 7-70 (79)
352 PF11932 DUF3450: Protein of u 46.1 2.6E+02 0.0056 26.3 14.4 56 225-285 61-116 (251)
353 KOG2991 Splicing regulator [RN 45.9 2.6E+02 0.0056 28.3 10.7 116 84-210 185-301 (330)
354 cd09234 V_HD-PTP_like Protein- 45.9 3.1E+02 0.0067 27.1 25.7 191 60-273 77-275 (337)
355 PF07111 HCR: Alpha helical co 45.8 4.9E+02 0.011 29.4 23.1 87 229-316 192-291 (739)
356 TIGR00019 prfA peptide chain r 45.8 3.5E+02 0.0077 27.8 12.7 96 192-313 5-100 (360)
357 COG5278 Predicted periplasmic 45.2 1.8E+02 0.0038 27.6 9.2 62 176-237 96-163 (207)
358 PF15358 TSKS: Testis-specific 45.1 1.9E+02 0.004 31.0 10.0 110 179-298 103-212 (558)
359 PF10241 KxDL: Uncharacterized 44.9 1.7E+02 0.0037 23.8 8.9 66 252-317 14-86 (88)
360 PF12777 MT: Microtubule-bindi 44.8 92 0.002 30.8 7.6 24 71-94 10-33 (344)
361 KOG0239 Kinesin (KAR3 subfamil 44.7 4.8E+02 0.01 28.9 17.9 50 256-305 244-293 (670)
362 KOG1760 Molecular chaperone Pr 44.6 2.4E+02 0.0052 25.4 9.3 76 237-314 23-121 (131)
363 PRK13729 conjugal transfer pil 44.6 70 0.0015 34.0 7.0 39 247-285 77-115 (475)
364 KOG4572 Predicted DNA-binding 44.6 5.8E+02 0.013 29.9 17.5 184 74-280 927-1112(1424)
365 smart00338 BRLZ basic region l 44.5 1.3E+02 0.0029 22.5 7.3 38 267-304 26-63 (65)
366 PF05103 DivIVA: DivIVA protei 44.4 45 0.00099 27.5 4.7 34 184-217 22-55 (131)
367 PRK10246 exonuclease subunit S 44.3 5.4E+02 0.012 29.5 25.8 7 213-219 761-767 (1047)
368 PF07851 TMPIT: TMPIT-like pro 44.2 2.8E+02 0.0061 28.2 10.9 93 114-225 7-99 (330)
369 KOG2010 Double stranded RNA bi 44.2 2E+02 0.0043 29.9 9.8 66 225-316 145-210 (405)
370 KOG4809 Rab6 GTPase-interactin 44.1 4.8E+02 0.01 28.8 21.4 36 175-210 409-444 (654)
371 PF12240 Angiomotin_C: Angiomo 44.1 3E+02 0.0065 26.5 14.9 167 120-313 2-168 (205)
372 PF06476 DUF1090: Protein of u 44.0 64 0.0014 27.8 5.6 23 292-314 67-89 (115)
373 cd00890 Prefoldin Prefoldin is 43.8 1.8E+02 0.0039 23.8 8.8 28 70-97 17-44 (129)
374 PF06005 DUF904: Protein of un 43.3 1.7E+02 0.0037 23.4 9.6 27 247-273 12-38 (72)
375 PF11336 DUF3138: Protein of u 43.3 52 0.0011 34.9 5.8 37 186-222 82-118 (514)
376 COG2900 SlyX Uncharacterized p 43.2 1.6E+02 0.0034 24.1 7.3 53 264-316 5-57 (72)
377 PF02601 Exonuc_VII_L: Exonucl 43.0 3.1E+02 0.0068 26.3 13.0 114 190-316 161-275 (319)
378 PF10498 IFT57: Intra-flagella 43.0 1.8E+02 0.0038 29.6 9.4 67 247-316 256-322 (359)
379 PF09486 HrpB7: Bacterial type 42.9 2.7E+02 0.0058 25.5 13.3 93 64-162 24-116 (158)
380 PRK03947 prefoldin subunit alp 42.9 1.1E+02 0.0024 26.1 6.9 40 263-309 97-136 (140)
381 PF10234 Cluap1: Clusterin-ass 42.9 2.8E+02 0.0061 27.4 10.4 71 116-199 167-237 (267)
382 PF08172 CASP_C: CASP C termin 42.8 2.3E+02 0.0049 27.5 9.7 57 253-309 79-135 (248)
383 COG4372 Uncharacterized protei 42.7 4.5E+02 0.0097 28.1 24.3 83 230-314 196-278 (499)
384 KOG4403 Cell surface glycoprot 42.5 4.7E+02 0.01 28.3 14.4 118 148-273 254-381 (575)
385 PRK15178 Vi polysaccharide exp 42.5 4.3E+02 0.0094 27.8 14.8 130 178-308 233-385 (434)
386 PF04859 DUF641: Plant protein 42.3 2.3E+02 0.005 25.2 8.9 27 207-233 30-58 (131)
387 PF08657 DASH_Spc34: DASH comp 42.3 49 0.0011 32.2 5.2 82 225-315 178-259 (259)
388 PF01166 TSC22: TSC-22/dip/bun 42.2 53 0.0011 25.9 4.3 35 276-310 9-43 (59)
389 PF10018 Med4: Vitamin-D-recep 41.8 1.8E+02 0.0038 26.5 8.4 42 267-308 22-63 (188)
390 PF15259 GTSE1_N: G-2 and S-ph 41.8 19 0.0004 32.6 2.1 36 6-51 4-40 (141)
391 TIGR01730 RND_mfp RND family e 41.7 1.1E+02 0.0023 28.4 7.1 35 67-101 62-96 (322)
392 PRK11519 tyrosine kinase; Prov 41.4 5E+02 0.011 28.3 20.0 111 109-233 235-352 (719)
393 KOG0946 ER-Golgi vesicle-tethe 41.1 6.3E+02 0.014 29.3 21.9 104 60-164 662-776 (970)
394 PF10234 Cluap1: Clusterin-ass 41.1 3.2E+02 0.0069 27.1 10.5 52 265-316 167-218 (267)
395 PF15035 Rootletin: Ciliary ro 40.5 3E+02 0.0065 25.4 14.7 24 278-301 99-122 (182)
396 PF14182 YgaB: YgaB-like prote 40.3 1.5E+02 0.0033 24.5 7.0 50 226-285 23-72 (79)
397 TIGR00634 recN DNA repair prot 40.3 4.7E+02 0.01 27.6 20.3 110 203-316 253-374 (563)
398 PF04871 Uso1_p115_C: Uso1 / p 40.0 2.6E+02 0.0056 24.6 13.1 84 223-318 30-114 (136)
399 KOG0614 cGMP-dependent protein 40.0 1.5E+02 0.0032 32.7 8.7 62 264-325 21-82 (732)
400 TIGR00020 prfB peptide chain r 39.8 2.8E+02 0.0061 28.4 10.3 32 195-226 24-55 (364)
401 COG0419 SbcC ATPase involved i 39.6 5.9E+02 0.013 28.5 27.3 41 61-101 402-442 (908)
402 PF13870 DUF4201: Domain of un 39.5 2.7E+02 0.0059 24.7 20.7 30 185-214 89-118 (177)
403 PF06810 Phage_GP20: Phage min 39.1 1.9E+02 0.0042 25.9 8.1 48 258-305 18-68 (155)
404 KOG0980 Actin-binding protein 38.8 6.9E+02 0.015 29.1 23.6 25 287-311 525-549 (980)
405 cd07618 BAR_Rich1 The Bin/Amph 38.7 3.3E+02 0.0072 26.4 10.2 23 211-233 69-91 (246)
406 PRK13169 DNA replication intia 38.6 2.1E+02 0.0045 24.8 7.9 47 270-316 4-50 (110)
407 PF04899 MbeD_MobD: MbeD/MobD 38.5 1.9E+02 0.0041 23.2 7.1 45 263-307 24-68 (70)
408 KOG4603 TBP-1 interacting prot 38.3 2.1E+02 0.0046 27.2 8.4 72 236-314 69-142 (201)
409 PF10046 BLOC1_2: Biogenesis o 38.3 2.3E+02 0.0049 23.4 9.0 62 252-313 20-84 (99)
410 cd07595 BAR_RhoGAP_Rich-like T 38.0 1.4E+02 0.003 28.6 7.4 23 211-233 69-91 (244)
411 PF04977 DivIC: Septum formati 38.0 56 0.0012 24.6 3.9 35 185-219 22-56 (80)
412 COG1382 GimC Prefoldin, chaper 37.9 2.9E+02 0.0062 24.4 10.4 70 232-305 39-108 (119)
413 KOG3958 Putative dynamitin [Cy 37.9 4.7E+02 0.01 26.9 14.3 147 152-317 100-262 (371)
414 PRK14011 prefoldin subunit alp 37.8 1.6E+02 0.0034 26.4 7.3 43 262-304 90-132 (144)
415 KOG0837 Transcriptional activa 37.3 70 0.0015 31.9 5.4 36 247-282 228-263 (279)
416 PF05565 Sipho_Gp157: Siphovir 37.1 3.1E+02 0.0066 24.5 10.4 57 257-313 30-86 (162)
417 PF08581 Tup_N: Tup N-terminal 36.8 2.3E+02 0.005 23.1 9.6 48 268-315 26-77 (79)
418 TIGR03752 conj_TIGR03752 integ 36.7 1.8E+02 0.0038 31.1 8.5 69 246-314 66-135 (472)
419 PF06428 Sec2p: GDP/GTP exchan 36.6 26 0.00057 29.6 2.1 68 251-318 13-81 (100)
420 TIGR02894 DNA_bind_RsfA transc 36.3 3.6E+02 0.0077 25.1 9.6 27 195-221 29-55 (161)
421 COG3096 MukB Uncharacterized p 36.1 7.6E+02 0.017 28.8 19.4 70 71-140 392-464 (1480)
422 PF02183 HALZ: Homeobox associ 36.0 1.4E+02 0.0031 21.9 5.6 30 250-279 2-31 (45)
423 cd09236 V_AnPalA_UmRIM20_like 36.0 4.5E+02 0.0098 26.1 19.5 198 73-314 13-221 (353)
424 PHA03332 membrane glycoprotein 35.6 5.5E+02 0.012 30.6 12.5 129 181-315 801-950 (1328)
425 TIGR03794 NHPM_micro_HlyD NHPM 35.3 4.7E+02 0.01 26.2 18.9 25 288-312 227-251 (421)
426 PF10458 Val_tRNA-synt_C: Valy 35.2 96 0.0021 23.7 4.9 31 76-106 4-34 (66)
427 PF04977 DivIC: Septum formati 35.2 95 0.0021 23.3 4.8 21 293-313 29-49 (80)
428 PF06785 UPF0242: Uncharacteri 34.9 5.5E+02 0.012 26.8 14.3 72 245-316 126-215 (401)
429 PF11365 DUF3166: Protein of u 34.5 2.1E+02 0.0045 24.4 7.1 76 185-272 13-88 (96)
430 KOG4603 TBP-1 interacting prot 33.9 3.2E+02 0.007 26.0 8.9 66 237-309 79-144 (201)
431 PF15290 Syntaphilin: Golgi-lo 33.9 5.2E+02 0.011 26.2 10.8 79 117-214 57-137 (305)
432 PF13942 Lipoprotein_20: YfhG 33.9 2.5E+02 0.0054 26.5 8.1 56 72-128 36-91 (179)
433 PRK00286 xseA exodeoxyribonucl 33.9 5.2E+02 0.011 26.2 14.6 114 81-219 280-395 (438)
434 PF14916 CCDC92: Coiled-coil d 33.9 90 0.0019 24.5 4.5 14 255-268 5-18 (60)
435 PF14073 Cep57_CLD: Centrosome 33.8 4.1E+02 0.0088 25.0 10.0 73 227-303 71-156 (178)
436 KOG1029 Endocytic adaptor prot 33.7 8.2E+02 0.018 28.5 15.6 106 199-316 435-542 (1118)
437 PF10205 KLRAQ: Predicted coil 33.5 3.2E+02 0.0068 23.6 10.4 66 251-316 3-75 (102)
438 PF03961 DUF342: Protein of un 33.5 2.7E+02 0.0059 28.4 9.1 33 179-211 325-358 (451)
439 KOG0962 DNA repair protein RAD 33.4 9.4E+02 0.02 29.1 24.7 108 192-316 976-1083(1294)
440 KOG4348 Adaptor protein CMS/SE 33.4 1.5E+02 0.0033 31.9 7.3 56 256-314 565-620 (627)
441 PF10805 DUF2730: Protein of u 33.1 2.7E+02 0.0058 23.3 7.6 56 251-306 40-97 (106)
442 PF15290 Syntaphilin: Golgi-lo 33.0 1.9E+02 0.0042 29.2 7.6 31 245-275 81-111 (305)
443 PRK05431 seryl-tRNA synthetase 32.6 2.6E+02 0.0056 28.8 8.8 66 145-210 27-96 (425)
444 PF07111 HCR: Alpha helical co 32.2 7.9E+02 0.017 27.9 22.1 27 208-234 283-309 (739)
445 PRK13182 racA polar chromosome 32.2 4E+02 0.0087 24.5 9.1 62 253-316 85-146 (175)
446 PF11180 DUF2968: Protein of u 32.1 4.5E+02 0.0098 25.0 10.0 78 238-315 104-181 (192)
447 PF04728 LPP: Lipoprotein leuc 31.7 2.5E+02 0.0054 21.9 7.1 37 267-303 10-46 (56)
448 TIGR00293 prefoldin, archaeal 31.5 1.5E+02 0.0033 24.6 5.9 34 263-296 89-122 (126)
449 KOG4302 Microtubule-associated 31.5 7.8E+02 0.017 27.5 12.5 112 149-311 64-190 (660)
450 PF02994 Transposase_22: L1 tr 31.4 1.6E+02 0.0035 29.7 7.0 53 264-316 141-193 (370)
451 PF10158 LOH1CR12: Tumour supp 31.3 3E+02 0.0064 24.3 7.8 62 248-313 58-119 (131)
452 KOG1666 V-SNARE [Intracellular 31.2 1.5E+02 0.0033 28.6 6.5 57 259-315 35-92 (220)
453 PF14915 CCDC144C: CCDC144C pr 30.9 5.9E+02 0.013 25.9 18.8 151 119-314 138-297 (305)
454 TIGR01000 bacteriocin_acc bact 30.7 5.9E+02 0.013 25.9 22.9 25 292-316 288-312 (457)
455 PF13779 DUF4175: Domain of un 30.5 8.6E+02 0.019 27.7 13.5 180 122-307 431-614 (820)
456 KOG0980 Actin-binding protein 30.3 9.4E+02 0.02 28.1 23.3 49 262-310 461-516 (980)
457 PF12761 End3: Actin cytoskele 30.0 2.2E+02 0.0049 27.0 7.3 53 263-315 131-187 (195)
458 smart00502 BBC B-Box C-termina 29.9 2.8E+02 0.006 21.9 9.0 97 66-168 4-101 (127)
459 TIGR02971 heterocyst_DevB ABC 29.6 5E+02 0.011 24.7 14.8 35 67-101 95-129 (327)
460 PF10212 TTKRSYEDQ: Predicted 29.6 4.8E+02 0.01 28.3 10.4 73 228-308 435-514 (518)
461 PF10458 Val_tRNA-synt_C: Valy 29.5 1.7E+02 0.0037 22.3 5.4 59 249-307 7-65 (66)
462 PF12018 DUF3508: Domain of un 29.5 5.3E+02 0.012 25.0 10.8 58 75-132 8-66 (281)
463 cd00939 MetRS_RNA MetRS_RNA bi 29.4 1.2E+02 0.0026 22.7 4.3 41 152-199 2-42 (45)
464 PF02996 Prefoldin: Prefoldin 29.4 1.7E+02 0.0038 23.8 5.8 38 262-299 79-116 (120)
465 KOG0979 Structural maintenance 29.0 1E+03 0.022 28.1 21.0 33 65-97 184-216 (1072)
466 COG1315 Uncharacterized conser 28.9 1.6E+02 0.0036 31.8 6.8 68 247-314 411-487 (543)
467 PF09177 Syntaxin-6_N: Syntaxi 28.6 3.2E+02 0.0069 22.1 10.2 71 226-312 14-94 (97)
468 PF06476 DUF1090: Protein of u 28.6 1.8E+02 0.0038 25.1 5.9 39 226-264 23-61 (115)
469 PF09798 LCD1: DNA damage chec 28.5 4E+02 0.0086 29.6 9.8 49 251-316 13-61 (654)
470 KOG0804 Cytoplasmic Zn-finger 28.4 7.8E+02 0.017 26.6 11.8 18 146-163 339-357 (493)
471 PF10562 CaM_bdg_C0: Calmoduli 28.3 69 0.0015 22.1 2.6 18 82-99 11-28 (29)
472 PF08826 DMPK_coil: DMPK coile 28.3 2.9E+02 0.0063 21.6 6.9 16 251-266 6-21 (61)
473 PF01544 CorA: CorA-like Mg2+ 28.2 4.2E+02 0.009 24.1 8.6 24 187-210 118-141 (292)
474 KOG4098 Molecular chaperone Pr 28.2 4.6E+02 0.01 23.9 10.3 88 222-314 17-119 (140)
475 PF03580 Herpes_UL14: Herpesvi 28.1 4.8E+02 0.01 24.0 11.6 100 109-222 31-130 (149)
476 KOG0982 Centrosomal protein Nu 27.7 5.5E+02 0.012 27.6 10.2 88 225-312 290-384 (502)
477 smart00721 BAR BAR domain. 27.6 4.4E+02 0.0095 23.4 15.0 96 213-312 85-194 (239)
478 TIGR02473 flagell_FliJ flagell 27.6 3.5E+02 0.0077 22.3 12.9 42 124-165 12-53 (141)
479 PF14931 IFT20: Intraflagellar 27.4 4.2E+02 0.009 23.1 13.1 95 180-294 13-107 (120)
480 PF14712 Snapin_Pallidin: Snap 27.3 3E+02 0.0066 21.7 6.7 43 59-101 4-46 (92)
481 PF10158 LOH1CR12: Tumour supp 27.1 4.4E+02 0.0095 23.3 8.4 73 211-290 45-117 (131)
482 PF04420 CHD5: CHD5-like prote 27.0 2.8E+02 0.0061 24.8 7.1 56 190-247 36-93 (161)
483 PRK15396 murein lipoprotein; P 26.8 2.4E+02 0.0052 23.1 6.0 39 247-285 26-64 (78)
484 PF03962 Mnd1: Mnd1 family; I 26.8 5.1E+02 0.011 23.9 12.9 58 186-243 68-126 (188)
485 PRK00153 hypothetical protein; 26.7 60 0.0013 26.9 2.6 34 189-222 5-38 (104)
486 TIGR00414 serS seryl-tRNA synt 26.6 4.7E+02 0.01 26.9 9.5 94 119-212 3-101 (418)
487 smart00787 Spc7 Spc7 kinetocho 26.5 6.6E+02 0.014 25.1 18.7 15 281-295 271-285 (312)
488 PF07889 DUF1664: Protein of u 26.1 4.6E+02 0.01 23.2 9.2 62 250-311 54-119 (126)
489 COG1315 Uncharacterized conser 26.0 3.7E+02 0.008 29.3 8.7 38 177-214 400-437 (543)
490 PRK09578 periplasmic multidrug 25.9 4.6E+02 0.01 25.8 9.0 35 67-101 99-133 (385)
491 KOG2391 Vacuolar sorting prote 25.9 2.2E+02 0.0047 29.5 6.8 52 248-299 227-278 (365)
492 TIGR03545 conserved hypothetic 25.8 5.4E+02 0.012 27.8 10.0 90 111-212 149-244 (555)
493 TIGR03495 phage_LysB phage lys 25.6 4.9E+02 0.011 23.3 8.8 63 254-316 34-96 (135)
494 KOG2264 Exostosin EXT1L [Signa 25.6 3.7E+02 0.0079 30.1 8.7 38 276-313 102-139 (907)
495 KOG3091 Nuclear pore complex, 25.2 9.1E+02 0.02 26.3 14.4 59 40-101 246-322 (508)
496 PF13118 DUF3972: Protein of u 25.2 2.7E+02 0.0059 24.8 6.5 25 275-299 100-124 (126)
497 PLN02678 seryl-tRNA synthetase 25.1 3.5E+02 0.0075 28.4 8.3 67 145-211 32-102 (448)
498 TIGR00293 prefoldin, archaeal 25.0 2.3E+02 0.0049 23.6 5.8 42 259-300 85-126 (126)
499 PF05278 PEARLI-4: Arabidopsis 24.9 7E+02 0.015 24.9 14.4 136 164-299 111-260 (269)
500 PF10205 KLRAQ: Predicted coil 24.8 4.6E+02 0.0099 22.7 10.4 94 249-342 1-94 (102)
No 1
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=100.00 E-value=4.5e-95 Score=681.83 Aligned_cols=324 Identities=43% Similarity=0.603 Sum_probs=317.1
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccccccCCCchhhHHHhhHHhhhhchhhhHhhHHHHHHH
Q 019366 9 DDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAA 88 (342)
Q Consensus 9 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a 88 (342)
-|+|||||-+++.+.+.||+.|+|||+.||+||+|+|-- .||||-|||||++|-++-+||+.+++||..+..|
T Consensus 6 ~~~D~~~~~~~a~~t~~~~n~~s~~dl~d~e~d~~~s~~-------~A~~~~tGm~~~~~~~~p~pk~~~~seq~~~~~a 78 (330)
T KOG2991|consen 6 QDDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGSTT-------VAPGVRTGMILSMTNEEPLPKKVRLSEQDFKVMA 78 (330)
T ss_pred cccccCCccchhhcccCCcchhhccCccccccccccCCC-------CCCCCccchhhhhccCCCCchhhhhHHHHHHHHH
Confidence 378899999999999999999999999999999999875 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 89 KSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 89 ~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
+.+|++|++.|||++|+|++++++|+++++||+.||+||.+|++|+++++|||++||||||+||||+|+|.++|+++|++
T Consensus 79 ~~elq~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~q 158 (330)
T KOG2991|consen 79 RDELQLRKSWKQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQ 158 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 019366 169 LKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGET 248 (342)
Q Consensus 169 ~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGri 248 (342)
++|++++||++|+|||||++|.|||++|+++++|++++|++|+||||||+|++||+||||||+|++||+|||+++++|||
T Consensus 159 q~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gri 238 (330)
T KOG2991|consen 159 QQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRI 238 (330)
T ss_pred hCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCCCCC
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLEEDKNDSVSDK 328 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~~~~~~~~~~~~ 328 (342)
|+|+++||.||+|++|||+++++||+||++||+||||||+||++||++|+.++.+|++|+..+++.+..+.++.+.+...
T Consensus 239 a~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~~~a~ 318 (330)
T KOG2991|consen 239 AELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDEVDAI 318 (330)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcccCC
Q 019366 329 NIGNDVTVSGE 339 (342)
Q Consensus 329 ~~~~~~~~~~~ 339 (342)
.++..+++.++
T Consensus 319 ~~~~~~e~~~k 329 (330)
T KOG2991|consen 319 DEDAKEEIAGK 329 (330)
T ss_pred CCcchhhcccC
Confidence 88888887765
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.14 E-value=0.00035 Score=74.78 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=31.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
+..++.++...+.....+...+.++..-+..+..+++.++..+..++.++......+..+...+
T Consensus 863 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~ 926 (1164)
T TIGR02169 863 KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555555555555555544444444333
No 3
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.01 E-value=0.005 Score=58.03 Aligned_cols=222 Identities=18% Similarity=0.283 Sum_probs=137.9
Q ss_pred hhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHh
Q 019366 60 ATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKK 139 (342)
Q Consensus 60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakr 139 (342)
-..-|=.||..|..+....+.++.++..++.++..|+.-+..+ ...-..+..++..+++
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e---------------------~~~~~~le~el~~lrk 110 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE---------------------LAERKDLEEELESLRK 110 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhhh
Confidence 4456778999999999999999999999999999888866665 2222233333333332
Q ss_pred H-HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHh-----------hhChhhHHHHHHHHHHHHHHHHHHHHHH
Q 019366 140 K-EAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRL-----------LLDPAIHEEFRRLKNLVEEKDKKVKELE 207 (342)
Q Consensus 140 R-Envll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~-----------LlDPAVNlef~rLR~eLee~~~klk~aq 207 (342)
- +...++ ...++.+|+-++..+..++..|.-....|+.- .-.|-+...+..+|. .++..+...+
T Consensus 111 ~ld~~~~~-r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~---~ye~~~~~~~ 186 (312)
T PF00038_consen 111 DLDEETLA-RVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRA---QYEEIAQKNR 186 (312)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHH---HHHHHHHHHH
T ss_pred hhhhhhhh-HhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHH---HHHHHHhhhh
Confidence 2 222222 23455555555555555555543222112111 112333444444443 3445555666
Q ss_pred Hhhhhcc---cCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019366 208 ENIAAVS---FTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVE 284 (342)
Q Consensus 208 ~eL~A~k---FtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE 284 (342)
.++.+|- +..-.....+--..+..+.+|+-++-+ .|+.|.+++..++..+..|.+++.++... +..+++
T Consensus 187 ~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~-----~~~~l~~el~~l~~~~~~Le~~l~~le~~---~~~~~~ 258 (312)
T PF00038_consen 187 EELEEWYQSKLEELRQQSEKSSEELESAKEELKELRR-----QIQSLQAELESLRAKNASLERQLRELEQR---LDEERE 258 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred hhhhhhcccccccccccccccccccchhHhHHHHHHh-----hhhHhhhhhhccccchhhhhhhHHHHHHH---HHHHHH
Confidence 6666553 211112222334456667788877777 56899999999999999999998777654 457788
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 285 RSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 285 ~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
..+..|..|..+|...+.++++...+.+..
T Consensus 259 ~~~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 259 EYQAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 888889999999999988888777666544
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.96 E-value=0.0076 Score=64.28 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=36.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
+..|..++.........++....++..-+.++..+++.++..+..++.++.....+++.+..++
T Consensus 868 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 931 (1179)
T TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555556666666666666666666665555555555555555554443
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=97.90 E-value=0.011 Score=63.24 Aligned_cols=185 Identities=19% Similarity=0.227 Sum_probs=89.1
Q ss_pred HHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHH
Q 019366 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE 198 (342)
Q Consensus 119 ~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee 198 (342)
.+..+...-..+..++.+...+-.-+...+...+..+.++...+..+.....-.... + -.+......+...+.+
T Consensus 252 ~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~-~-----~~l~~~~~~l~~k~~e 325 (880)
T PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD-A-----EAVEARREELEDRDEE 325 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-H-----HHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555666666665555555554543321111000 0 0112233444555555
Q ss_pred HHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhh--cccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019366 199 KDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNE--EGETHQLSVKLALQKSLNAELKSQFEALYKHM 276 (342)
Q Consensus 199 ~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~ls--eGria~Le~eLAlqK~~~eELrk~~~eL~~~l 276 (342)
.+..+...+.++..+.-.+ ..+......|..++.++...++ ...+..++..+.........++...+++..-+
T Consensus 326 l~~~l~~~~~~l~~~~~~~-----e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 326 LRDRLEECRVAAQAHNEEA-----ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444433221 4566777777777777665543 22344555555555555555555555554444
Q ss_pred hh-------hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 277 DG-------LTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 277 ~e-------LdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
.+ +...++.++..+-.+++.+...+..+..++..|...
T Consensus 401 ~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 401 GDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred hcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333344444444444444444444444444444333
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.87 E-value=0.0036 Score=67.17 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHH
Q 019366 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHS 97 (342)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~ 97 (342)
|.++...++.+...+..++.++..+..++....+
T Consensus 676 l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~ 709 (1164)
T TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQ 709 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666555555555555554
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.54 E-value=0.017 Score=64.67 Aligned_cols=126 Identities=26% Similarity=0.387 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhh--cccchhhhHHHHHHHH
Q 019366 183 PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNE--EGETHQLSVKLALQKS 260 (342)
Q Consensus 183 PAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~ls--eGria~Le~eLAlqK~ 260 (342)
+++...+..+..++...+.++..+..++..|...- .+|-.....++++..++-..+. .-.+..++..+...+.
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 863 (1163)
T COG1196 789 QALQEELEELEEELEEAERRLDALERELESLEQRR-----ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45556666666677777777777777777776322 4566666666666665554443 2345566777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 261 LNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 261 ~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
..++++.....+...+..+..+.+.+...+-.+...+.+..++++++...+..
T Consensus 864 ~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888877777777655543
No 8
>PRK11637 AmiB activator; Provisional
Probab=97.38 E-value=0.11 Score=51.97 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
|+..++.+.....+|.....+-...+..|..+....+..|..|+++.......|++++
T Consensus 196 l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 196 QKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444555555555555555555555555555544
No 9
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.36 E-value=0.1 Score=56.43 Aligned_cols=221 Identities=18% Similarity=0.250 Sum_probs=127.6
Q ss_pred chhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHH---HHhHHHHHH----H
Q 019366 74 CKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEK---AKKKEAAFI----V 146 (342)
Q Consensus 74 ~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~e---akrREnvll----~ 146 (342)
.-..|..+++||.+.+..=+-.++. |...+. ..+.+..+|..++..-+.|+.-+.. ++.+|.--+ .
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsq------is~l~~-~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEk 495 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQ------ISSLTN-NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEK 495 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH------Hhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666655555555552 322222 4456777888888877777764433 334443322 2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcC--------C-chHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 019366 147 TFAKREQEIAELKSAVRDLKAQLK--------P-PLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTA 217 (342)
Q Consensus 147 rLA~KEQEiqel~s~l~dlk~~~~--------p-ss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtP 217 (342)
||+.-...-+.+.++|.+-|.... | ...++ .-.+++.. +|....+.+.+++.++.+|..-.
T Consensus 496 rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~--~r~e~~e~-----~r~r~~~lE~E~~~lr~elk~ke--- 565 (697)
T PF09726_consen 496 RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQA--TRQECAES-----CRQRRRQLESELKKLRRELKQKE--- 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchh--ccchhHHH-----HHHHHHHHHHHHHHHHHHHHHHH---
Confidence 333322223333444444443321 1 11111 11144442 35555555666666666664432
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhhh--hcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHH
Q 019366 218 NSKMGKALMAKCKTLQEENDEIGRQN--EEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLRE 295 (342)
Q Consensus 218 qS~~GKrLMAKCR~LqeENEELGr~l--seGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQq 295 (342)
..|+.|+.|+.+|.+.. ++.-+.-|=+.|+..+..+.-|.+.+..--++=.+|=...=.-..+|-+++.
T Consensus 566 ---------e~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~ 636 (697)
T PF09726_consen 566 ---------EQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQG 636 (697)
T ss_pred ---------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777666642 2234666667777777777777777776666666666666666667777899
Q ss_pred HHHHhHHHHHHHHHHHhhhhhcccc
Q 019366 296 KLEENDHELEKLKHELRQKSVLEED 320 (342)
Q Consensus 296 eL~~~~~~l~~lk~eL~~~~~~~~~ 320 (342)
+|.+++.||..|+..+.+.-++-++
T Consensus 637 ~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 637 QLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999988888775444
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.25 E-value=0.12 Score=61.28 Aligned_cols=225 Identities=23% Similarity=0.320 Sum_probs=124.4
Q ss_pred HhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHH
Q 019366 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (342)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvl 144 (342)
..||+.++.--+.++.+.-.+-.|++++..|+.-|+. .+...+..+.+...++.+.++++..+.-.+
T Consensus 1332 ~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~-------------~~~~~~eelee~kk~l~~~lq~~qe~~e~~ 1398 (1930)
T KOG0161|consen 1332 DLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEE-------------EVLQRLEELEELKKKLQQRLQELEEQIEAA 1398 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4577888888888888999999999999999997765 233334455566666667777777776666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHH
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKA 224 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKr 224 (342)
..+.+++|.-...+...+.++..-... .+++. -....-..+.-..|.+.+++.+.+..++.+- ...-+.
T Consensus 1399 ~~~~~~Lek~k~~l~~el~d~~~d~~~----~~~~~--~~le~k~k~f~k~l~e~k~~~e~l~~Eld~a-----q~e~r~ 1467 (1930)
T KOG0161|consen 1399 NAKNASLEKAKNRLQQELEDLQLDLER----SRAAV--AALEKKQKRFEKLLAEWKKKLEKLQAELDAA-----QRELRQ 1467 (1930)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 666666655555544444443222100 00000 0011111222233333344444444444331 122223
Q ss_pred HHHHHHHHHHHHHHHhhhhhc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHH
Q 019366 225 LMAKCKTLQEENDEIGRQNEE--GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDH 302 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~lse--Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~ 302 (342)
+..+...|....+|+...+.+ -.-..|..++.-++.++.++-+...+|+.....++.+.+.||..|.-+...|+..+.
T Consensus 1468 ~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1468 LSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334444444444443331110 022456666666677777777777777777777777777777777777776666666
Q ss_pred HHHHHHHHHhh
Q 019366 303 ELEKLKHELRQ 313 (342)
Q Consensus 303 ~l~~lk~eL~~ 313 (342)
..-+++-++++
T Consensus 1548 ~~lr~~~~~~~ 1558 (1930)
T KOG0161|consen 1548 KKLRLQLELQQ 1558 (1930)
T ss_pred HHHHHHHHHHH
Confidence 65554444333
No 11
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.07 E-value=0.085 Score=59.50 Aligned_cols=145 Identities=23% Similarity=0.350 Sum_probs=82.1
Q ss_pred hhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcC-CCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHH-HH
Q 019366 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNEL-FIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKE-AA 143 (342)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~-~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrRE-nv 143 (342)
.||+.++.+...|++++...+++...+.+-+...+.-. .+ .-..-.-......++.|+.....++.++.++.+.+ ..
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 682 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREI-TQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ 682 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888887777777666666555544444322200 00 00001223344567777777777777776655544 56
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHH------hhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019366 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARR------LLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (342)
Q Consensus 144 ll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~------~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~ 211 (342)
....++..+.++..+..++..+...+......++. .=+.-.....+..++.++.+.+.+.+.-..+|.
T Consensus 683 ~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le 756 (1201)
T PF12128_consen 683 IEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELE 756 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888887777776665443332221 123444455555555555555555444444443
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.98 E-value=0.33 Score=55.27 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=34.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHh--HHHHHHHHHHHhhh
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEN--DHELEKLKHELRQK 314 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~--~~~l~~lk~eL~~~ 314 (342)
+..++.++......++.+...+..+..-+..+..++..++.....++..|... ..++..++.++...
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l 1040 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQH 1040 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555544444 44444444444433
No 13
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.97 E-value=0.5 Score=47.57 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhh---------hcccchhhhHHHHHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN---------EEGETHQLSVKLALQKS 260 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~l---------seGria~Le~eLAlqK~ 260 (342)
..|+..+.+.+.++..+. -.|+|+++.=+.|-++...|+..-.+..... ...-.+.|...++....
T Consensus 250 ~~l~~~l~~l~~~l~~l~-----~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 324 (498)
T TIGR03007 250 SELDGRIEALEKQLDALR-----LRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEA 324 (498)
T ss_pred CchHHHHHHHHHHHHHHH-----HHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHH
Confidence 345566666555555544 3899999888888888887777754432211 01112446666666777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhh---HHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 261 LNAELKSQFEALYKHMDGLTDDVERS---NEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 261 ~~eELrk~~~eL~~~l~eLdeEvE~l---qstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
..+.++.+...+.+-+.++..++..+ +..+..|+.+..-++.....+...+++...
T Consensus 325 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 325 EIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777666643 445667777777777776666666655443
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.89 E-value=0.39 Score=54.08 Aligned_cols=193 Identities=20% Similarity=0.266 Sum_probs=104.3
Q ss_pred hhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc------hHHHHHhhhChhhHHH
Q 019366 115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP------LMQARRLLLDPAIHEE 188 (342)
Q Consensus 115 lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~ps------s~qlR~~LlDPAVNle 188 (342)
-+...+..++..-..+...+.+...+...+..++...++++........++......- ..+.+. ....++-..
T Consensus 299 ~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~ 377 (1163)
T COG1196 299 ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS-ALLEELEEL 377 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHH
Confidence 3444444455544555555444444444455555555555555432222222111110 011111 345566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCc--hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHH
Q 019366 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANS--KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELK 266 (342)
Q Consensus 189 f~rLR~eLee~~~klk~aq~eL~A~kFtPqS--~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELr 266 (342)
|..++.++.....+....+.++...+=.=++ ..-.+|..+...+..+..++...+. .+..+++..+..+..+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~ 452 (1163)
T COG1196 378 FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELE-----ELQTELEELNEELEELE 452 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHH
Confidence 7777777777777777777777665532222 2223333444444444444433322 24455556666666666
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 267 SQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 267 k~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
..++++.+-+.++..++...+..+..+..++......+.++....+.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666666777777777777777777777777777777777766554
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=96.89 E-value=0.52 Score=50.67 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhc
Q 019366 84 ELEAAKSEIQKWHSSF 99 (342)
Q Consensus 84 ~l~~a~~e~~kW~~~f 99 (342)
.+..++..+.+|.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~ 185 (880)
T PRK02224 170 RASDARLGVERVLSDQ 185 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444555543
No 16
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.78 E-value=0.35 Score=45.07 Aligned_cols=217 Identities=18% Similarity=0.253 Sum_probs=105.1
Q ss_pred HHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhh----HhhH---HHHHHHHHH
Q 019366 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTL----KSSE---EMLKEQLEK 136 (342)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~l----k~sE---~~LkeQl~e 136 (342)
|-.|+..|....+.+..++.+|+.+.....+--+.+..=. .-..++.+.|... .... ..+.....+
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~-------rri~~lE~~le~~eerL~~~~~kL~~~e~~~de 75 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQ-------RRIQLLEEELERAEERLEEATEKLEEAEKRADE 75 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777666655544332200 0111122111111 1111 112223444
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 019366 137 AKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFT 216 (342)
Q Consensus 137 akrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFt 216 (342)
+.++=.+|-.|...-+--|..+..++..++...... -..+.+...++..+..+|...-
T Consensus 76 ~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~--------------------e~k~~E~~rkl~~~E~~Le~aE-- 133 (237)
T PF00261_consen 76 SERARKVLENREQSDEERIEELEQQLKEAKRRAEEA--------------------ERKYEEVERKLKVLEQELERAE-- 133 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--------------------HHHHHHCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH--
Confidence 444446666666666777777777776665542111 1122222222222222222111
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhhhcccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHH
Q 019366 217 ANSKMGKALMAKCKTLQEENDEIGRQNEEGET--HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLR 294 (342)
Q Consensus 217 PqS~~GKrLMAKCR~LqeENEELGr~lseGri--a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQ 294 (342)
...-.+-++|+.|.++..-+|..+.+--+ .+...........+..|...+.+...-...+...|..++..|-.|.
T Consensus 134 ---eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 134 ---ERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223445777777777777764432111 1111222233334444555555555555555555555555555666
Q ss_pred HHHHHhHHHHHHHHHHHh
Q 019366 295 EKLEENDHELEKLKHELR 312 (342)
Q Consensus 295 qeL~~~~~~l~~lk~eL~ 312 (342)
.+|...+.....++.+|.
T Consensus 211 ~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 211 DELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666553
No 17
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.71 E-value=0.46 Score=54.31 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHH---HHhhhhhc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 225 LMAKCKTLQEEND---EIGRQNEE--GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 225 LMAKCR~LqeENE---ELGr~lse--Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
.-.-|+.+|++-+ +++-.++. .--..|..+.+..+...+..+....++...+.++.+++..+++++..+.-++.+
T Consensus 569 ~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k 648 (1317)
T KOG0612|consen 569 SKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLK 648 (1317)
T ss_pred hhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHH
Confidence 3344666666555 33332221 112355666667777777888888888888888888888888888777777666
Q ss_pred hHH
Q 019366 300 NDH 302 (342)
Q Consensus 300 ~~~ 302 (342)
.+.
T Consensus 649 ~~e 651 (1317)
T KOG0612|consen 649 VEE 651 (1317)
T ss_pred HHH
Confidence 655
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=96.70 E-value=1.2 Score=47.82 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=24.0
Q ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 122 ~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
.++.....++.++.....+=.-+-..+...++++.++...+..+...
T Consensus 235 ~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~ 281 (880)
T PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443444445666666666666666555443
No 19
>PRK11637 AmiB activator; Provisional
Probab=96.68 E-value=0.82 Score=45.82 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=33.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHH
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL 297 (342)
-+.|+...+-.+.....|++...+...-+.+|..+..+++..|..++.+.
T Consensus 207 k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~~ 256 (428)
T PRK11637 207 QQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREA 256 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666777777777777777777777777777666655443
No 20
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.51 E-value=1.1 Score=45.33 Aligned_cols=27 Identities=7% Similarity=0.399 Sum_probs=12.9
Q ss_pred hhhchhhhHhhHHHHHHHHHHHHHHHH
Q 019366 71 LQNCKDTLATCQLELEAAKSEIQKWHS 97 (342)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~e~~kW~~ 97 (342)
+...+..+..+++++...+.++..++.
T Consensus 176 ~~e~~~~i~~l~~~i~~l~~~i~~~~~ 202 (562)
T PHA02562 176 IRELNQQIQTLDMKIDHIQQQIKTYNK 202 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555544443
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.48 E-value=0.77 Score=54.47 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=122.5
Q ss_pred hHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC---CchHHHHHhhhChhhHHHHHHHHHHHHHH
Q 019366 123 LKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLK---PPLMQARRLLLDPAIHEEFRRLKNLVEEK 199 (342)
Q Consensus 123 lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~---pss~qlR~~LlDPAVNlef~rLR~eLee~ 199 (342)
..+-+..|.+++ +.+.-|++.++.+..-++.+|.++-...+ -|.|... |--+..+|..||.+.+-.
T Consensus 1097 w~E~~~~Leqe~-------~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g----~sdL~~iv~~LR~Ekei~ 1165 (1822)
T KOG4674|consen 1097 WSEKEDALEQEV-------NELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG----LSDLQNIVSFLRKEKEIA 1165 (1822)
T ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc----hHHHHHHHHHHHhHHHHH
Confidence 444455555555 45566788888888888888876543322 1122211 555888999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchh---------------hhHHHHHHHHHHHH
Q 019366 200 DKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQ---------------LSVKLALQKSLNAE 264 (342)
Q Consensus 200 ~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~---------------Le~eLAlqK~~~eE 264 (342)
..++..++.+.. +|-.++..++...++|-+.+..-|.-. --.++.+.+.-|.-
T Consensus 1166 ~tk~~~lk~e~~------------~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~ 1233 (1822)
T KOG4674|consen 1166 ETKLDTLKRENA------------RLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKV 1233 (1822)
T ss_pred hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHH
Confidence 999999988754 566777777777777766554433322 23467778888888
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 265 LKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 265 Lrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
||........-+.+|...++-++..|.-||..|.+++.++....+++....-
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~ 1285 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEE 1285 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888888888888888888888888888888877777765543
No 22
>PF13514 AAA_27: AAA domain
Probab=96.46 E-value=1.7 Score=48.79 Aligned_cols=97 Identities=23% Similarity=0.370 Sum_probs=59.8
Q ss_pred hHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC-cCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHH
Q 019366 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN-ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFI 145 (342)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~-e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll 145 (342)
|.+.++.....+..++.++..+..++..|+..+.. -.-++-..+..|..+...+..++.....+.+. .-+-
T Consensus 678 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~--------~~~~ 749 (1111)
T PF13514_consen 678 LEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEI--------RELR 749 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence 34555667777777888888888888888886664 11122222345666666666666544432221 1233
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCC
Q 019366 146 VTFAKREQEIAELKSAVRDLKAQLKP 171 (342)
Q Consensus 146 ~rLA~KEQEiqel~s~l~dlk~~~~p 171 (342)
.++...+.++..+...+..+-....|
T Consensus 750 ~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 750 RRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 46777778888888877777665544
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.38 E-value=0.69 Score=52.73 Aligned_cols=137 Identities=14% Similarity=0.158 Sum_probs=68.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHH
Q 019366 146 VTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKAL 225 (342)
Q Consensus 146 ~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrL 225 (342)
..+....+++.++..+|..+.....+.... + . + -.|..++..+..++.....++..++.+...++ .-=+.|
T Consensus 792 ~~i~r~~~ei~~l~~qie~l~~~l~~~~~~-~-s-~-~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~-----~eI~~L 862 (1311)
T TIGR00606 792 TIMERFQMELKDVERKIAQQAAKLQGSDLD-R-T-V-QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQ-----EQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc-C-C-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 344556788888888888887665443220 1 1 1 12444455555555555444444444443332 000112
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHH
Q 019366 226 MAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLML 293 (342)
Q Consensus 226 MAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~L 293 (342)
=.+...+..+.-.++..+. +...|+.+|.-.++.++.++...+++..-+..+..+++..++....+
T Consensus 863 q~ki~el~~~klkl~~~l~--~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 863 KSKTNELKSEKLQIGTNLQ--RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 2223333444444444333 44566666666666666666666655555555555555555554333
No 24
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.28 E-value=0.49 Score=50.63 Aligned_cols=178 Identities=20% Similarity=0.283 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHH-
Q 019366 128 EMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKEL- 206 (342)
Q Consensus 128 ~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~a- 206 (342)
..|.+++...+.+..-.+.++-.+|-.|+++++++...... .|+. ..+-.+=....++.+|+.+++....++..-
T Consensus 32 ~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~-~~pa---~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv 107 (617)
T PF15070_consen 32 QQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP-EPPA---GPSEVEQQLQAEAEHLRKELESLEEQLQAQV 107 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-cccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777778888888888888888877664322 2221 122222334445666777777666665543
Q ss_pred --HHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-
Q 019366 207 --EENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDV- 283 (342)
Q Consensus 207 --q~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEv- 283 (342)
+..|+..++--...+. .|=-+++.++++..+..+.+.. ++.=-..+.-.-++|.+||.++.+|.+-.-.|.++-
T Consensus 108 ~~ne~Ls~L~~EqEerL~-ELE~~le~~~e~~~D~~kLLe~--lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~ 184 (617)
T PF15070_consen 108 ENNEQLSRLNQEQEERLA-ELEEELERLQEQQEDRQKLLEQ--LQSDKATASRALSQNRELKEQLAELQDAFVKLTNENM 184 (617)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh--hcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2334444432222111 1112444445544444443331 222222355566788899999999988777777774
Q ss_pred ---HhhHHH---HHHHHHHHHHhHHHHHHHHHHHh
Q 019366 284 ---ERSNEM---VLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 284 ---E~lqst---l~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
..+|+. ...|+.+|.+....+..++..+.
T Consensus 185 elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le 219 (617)
T PF15070_consen 185 ELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLE 219 (617)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 12344444444444444444333
No 25
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.88 Score=48.87 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=95.8
Q ss_pred HhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHH
Q 019366 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (342)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvl 144 (342)
|+|=+-=...+..++.++++++.++.|+++-+.+|-.-....--.+.+.... |+ .=|+++.-||..|
T Consensus 39 L~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~----------Ee---sLLqESaakE~~y 105 (772)
T KOG0999|consen 39 LELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEER----------EE---SLLQESAAKEEYY 105 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh----------HH---HHHHHHHHhHHHH
Confidence 5555555667788899999999999999999998865222211111222111 22 2378899999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCchhh
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRR--LKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~r--LR~eLee~~~klk~aq~eL~A~kFtPqS~~G 222 (342)
+.+|...|-|+-+++..+...+.-. -...+--+-+.+.--+++..| ||.+|+++ ||- -
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~-erl~~~~sd~~e~~~~~E~qR~rlr~elKe~--------------KfR-----E 165 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEEN-ERLEKVHSDLKESNAAVEDQRRRLRDELKEY--------------KFR-----E 165 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcchhhHHHHHHHHHHHHHH--------------HHH-----H
Confidence 9999999999999988887765441 111222233344434444443 44555444 332 3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccc
Q 019366 223 KALMAKCKTLQEENDEIGRQNEEGE 247 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~lseGr 247 (342)
.||++----|.+||=-|-+++|.-|
T Consensus 166 ~RllseYSELEEENIsLQKqVs~LR 190 (772)
T KOG0999|consen 166 ARLLSEYSELEEENISLQKQVSNLR 190 (772)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHh
Confidence 4677777788888877777776544
No 26
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.26 E-value=1.9 Score=49.00 Aligned_cols=247 Identities=25% Similarity=0.318 Sum_probs=139.1
Q ss_pred HHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC--------cCCC-----------CCCCCCChhhh-----HHH
Q 019366 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN--------ELFI-----------PPGTSPEPRLV-----INY 119 (342)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~--------e~~i-----------~a~~~~~p~lv-----~~~ 119 (342)
|--||.-|++--+.|-.|..+|+.-+.||.|-++..++ ..|+ -++.+-.+++- -+-
T Consensus 186 ir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdR 265 (1195)
T KOG4643|consen 186 IRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDR 265 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHH
Confidence 66788777766666666666666666666665553322 1111 12333333332 222
Q ss_pred Hhh-------hHhhHHHHHHHHHHHHhH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC------------chHHH---
Q 019366 120 LQT-------LKSSEEMLKEQLEKAKKK-EAAFIVTFAKREQEIAELKSAVRDLKAQLKP------------PLMQA--- 176 (342)
Q Consensus 120 l~~-------lk~sE~~LkeQl~eakrR-Envll~rLA~KEQEiqel~s~l~dlk~~~~p------------ss~ql--- 176 (342)
+.. |.++.+-|++||+..+.| |+ ++.|.||-.|+..+++|+..... ++++.
T Consensus 266 veelkedN~vLleekeMLeeQLq~lrarse~------~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~e 339 (1195)
T KOG4643|consen 266 VEELKEDNRVLLEEKEMLEEQLQKLRARSEG------ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKE 339 (1195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhcccc------CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 222 445677899999988888 44 46666777777777766554211 00000
Q ss_pred ---------------------------HHhhhChhhHHHHH------------------------HHHHHHHHHHHHHHH
Q 019366 177 ---------------------------RRLLLDPAIHEEFR------------------------RLKNLVEEKDKKVKE 205 (342)
Q Consensus 177 ---------------------------R~~LlDPAVNlef~------------------------rLR~eLee~~~klk~ 205 (342)
-++.-|-|+.+++. .|+++=+...+|++.
T Consensus 340 qL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~ 419 (1195)
T KOG4643|consen 340 QLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEI 419 (1195)
T ss_pred HhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHH
Confidence 01111223322221 112333345667777
Q ss_pred HHHhhhhcccCCCc--hhhHHHHHHHHHHHHHHHHHhhhhhcc-----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 206 LEENIAAVSFTANS--KMGKALMAKCKTLQEENDEIGRQNEEG-----ETHQLSVKLALQKSLNAELKSQFEALYKHMDG 278 (342)
Q Consensus 206 aq~eL~A~kFtPqS--~~GKrLMAKCR~LqeENEELGr~lseG-----ria~Le~eLAlqK~~~eELrk~~~eL~~~l~e 278 (342)
+++++.-..|.=.- -.-|.||---..|++|+.-.-+..+.. ...++=.-.-......++++..++.|...|..
T Consensus 420 Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~ 499 (1195)
T KOG4643|consen 420 LEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNN 499 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666654333 334555555555555555444433322 11222222233345556677777888888888
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 279 LTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
-+.+..++.+..-.|.+++.+...+.+.+.+.++..+.
T Consensus 500 r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~ 537 (1195)
T KOG4643|consen 500 RDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEE 537 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888777776665554
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.22 E-value=2.6 Score=46.49 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=33.2
Q ss_pred hhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC
Q 019366 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (342)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~ 101 (342)
..=+.-||..|+.....|.++|..|..+..+|.+-..+++.
T Consensus 127 ~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~ 167 (775)
T PF10174_consen 127 QRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQS 167 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566788888888888888888888888888888887753
No 28
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.14 E-value=0.72 Score=47.94 Aligned_cols=43 Identities=16% Similarity=0.350 Sum_probs=35.3
Q ss_pred HHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 019366 176 ARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS 219 (342)
Q Consensus 176 lR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS 219 (342)
+..+ +||.+.....+|.+-....+.-...++.-+....|+|+.
T Consensus 260 l~~~-~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~ 302 (563)
T TIGR00634 260 LASV-IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPER 302 (563)
T ss_pred HHHh-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 3445 899999988888888888888888888888888999976
No 29
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.06 E-value=1.3 Score=41.55 Aligned_cols=184 Identities=23% Similarity=0.288 Sum_probs=93.8
Q ss_pred hhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHH
Q 019366 115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKN 194 (342)
Q Consensus 115 lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~ 194 (342)
-+..-|..|..+--+|..+..+.++ .+-+.+..-+.+...+.+||.+... .. --+-.=-+|+.++..||.
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~-------~ve~~ee~na~L~~e~~~L~~q~~s-~Q--qal~~aK~l~eEledLk~ 74 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQR-------SVETAEEGNAQLAEEITDLRKQLKS-LQ--QALQKAKALEEELEDLKT 74 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777755443 4444555555555555555554221 11 111122356677777776
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhh--hhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 019366 195 LVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQ--NEEGETHQLSVKLALQKSLNAELKSQFEAL 272 (342)
Q Consensus 195 eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~--lseGria~Le~eLAlqK~~~eELrk~~~eL 272 (342)
.+...+.....+.....-.. .--+.|.++.-+||+||..|-.. ...-++.+|-++.+..+.++=++..-.-.-
T Consensus 75 ~~~~lEE~~~~L~aq~rqlE-----kE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~ 149 (193)
T PF14662_consen 75 LAKSLEEENRSLLAQARQLE-----KEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQR 149 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 66666555444433322221 11233666666666666554321 122345556555555555554444444444
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 273 YKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
+.++.+-+..++.+..+|.-...=....+.++.+|...|.+
T Consensus 150 da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 150 DAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555444444444455555555555543
No 30
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.03 E-value=2.4 Score=44.25 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=14.7
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHhc
Q 019366 75 KDTLATCQLELEAAKSEIQKWHSSF 99 (342)
Q Consensus 75 ~~~~~~~~~~l~~a~~e~~kW~~~f 99 (342)
.....+|+.+|+.|..++..|+..+
T Consensus 210 ~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 210 EQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666644
No 31
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.94 E-value=2.6 Score=43.95 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=37.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
+.....+|.-.|..+...+.....|..-+.-|..++++....+..+++........+..|+.+|.+...
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~ 351 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRS 351 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 344444444445554444445555555555566666666666666666665555555555555554433
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.92 E-value=0.55 Score=47.51 Aligned_cols=44 Identities=7% Similarity=0.244 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 125 SSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 125 ~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
.....+++++.+.+..=..+.+.+...+.++..+...+..++..
T Consensus 167 ~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~ 210 (562)
T PHA02562 167 EMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK 210 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444555555555555555555555555555555555554443
No 33
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.79 E-value=1.4 Score=47.36 Aligned_cols=207 Identities=23% Similarity=0.348 Sum_probs=118.2
Q ss_pred hhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhh-------hHhhHHHHHHHHHHHH
Q 019366 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQT-------LKSSEEMLKEQLEKAK 138 (342)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~-------lk~sE~~LkeQl~eak 138 (342)
++-+.++..+.++-++|..++....++--.++..+.+. ++.....-+|..+|.. |..--+.|++|+..+.
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~---~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEV---AAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555666666666666666666655555333332 3344566666666654 3344456777775543
Q ss_pred hH---H-----HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh--ChhhHHHHHHHHHHHHHHH------HH
Q 019366 139 KK---E-----AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL--DPAIHEEFRRLKNLVEEKD------KK 202 (342)
Q Consensus 139 rR---E-----nvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~Ll--DPAVNlef~rLR~eLee~~------~k 202 (342)
-- . +..-+.|-.|+-+|++|-..|+.+++.+.-- |.... =-+|+.+....+.+|++.+ ..
T Consensus 270 ~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e----~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sD 345 (629)
T KOG0963|consen 270 SSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE----REKHKAQISALEKELKAKISELEELKEKLNSRSD 345 (629)
T ss_pred hhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 22 2 5567777789999999998888887764221 11000 0112222222222222222 22
Q ss_pred HHHHHHhh---hhcccCC------C----chhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 019366 203 VKELEENI---AAVSFTA------N----SKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (342)
Q Consensus 203 lk~aq~eL---~A~kFtP------q----S~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~ 269 (342)
+++.+.+| .++.|.| + .+.-.-|+.|-|.||.||..|....+ .++.++.....-.++++..-
T Consensus 346 YeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~-----~~~~~~~~~~~~~~el~~~~ 420 (629)
T KOG0963|consen 346 YEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANS-----GLSGRITELSKKGEELEAKA 420 (629)
T ss_pred HHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhcccc-----ccchhHHHHHhhhhhhHHHH
Confidence 34445554 5788983 3 47778899999999999999977554 23334455555555655555
Q ss_pred HHHHHHHhhhhhHHH
Q 019366 270 EALYKHMDGLTDDVE 284 (342)
Q Consensus 270 ~eL~~~l~eLdeEvE 284 (342)
.+..+++..+..|..
T Consensus 421 ~~~ke~i~klE~dl~ 435 (629)
T KOG0963|consen 421 TEQKELIAKLEQDLL 435 (629)
T ss_pred HHHHHHHHHHHhhHh
Confidence 555555555555544
No 34
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.79 E-value=2.3 Score=42.12 Aligned_cols=121 Identities=19% Similarity=0.280 Sum_probs=65.7
Q ss_pred HHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHH-HHhhhhhcccchhhhHHH
Q 019366 177 RRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEEND-EIGRQNEEGETHQLSVKL 255 (342)
Q Consensus 177 R~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENE-ELGr~lseGria~Le~eL 255 (342)
-.+..+|.| ..|+..+.+.+.++.++. -.|+|+++.=+.|=+++..|..... |+.+.. ..+....
T Consensus 248 ~~~~~~~~i----~~l~~~l~~le~~l~~l~-----~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~-----~~~~~~~ 313 (444)
T TIGR03017 248 PEVIANPII----QNLKTDIARAESKLAELS-----QRLGPNHPQYKRAQAEINSLKSQLNAEIKKVT-----SSVGTNS 313 (444)
T ss_pred hhhhcChHH----HHHHHHHHHHHHHHHHHH-----HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 334556655 467777777777776663 3599999988877777777776643 332222 1233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 256 ALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 256 AlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
...+.....++.++.++..-+..+. .....+..|+.++.-++.....|-..+++..
T Consensus 314 ~~~~~~~~~l~~~l~~~~~~~~~l~----~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 314 RILKQREAELREALENQKAKVLELN----RQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333332222 2233455566666666666555554444433
No 35
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.73 E-value=1.4 Score=50.56 Aligned_cols=197 Identities=17% Similarity=0.224 Sum_probs=123.4
Q ss_pred hHHHHhhhHhhHHHHHHHHHHHHhH---HHHHHHHHHhHHHHHHHHHHHHHHHH-HhcCCchHHHHHhhhChhhHHHHHH
Q 019366 116 VINYLQTLKSSEEMLKEQLEKAKKK---EAAFIVTFAKREQEIAELKSAVRDLK-AQLKPPLMQARRLLLDPAIHEEFRR 191 (342)
Q Consensus 116 v~~~l~~lk~sE~~LkeQl~eakrR---Envll~rLA~KEQEiqel~s~l~dlk-~~~~pss~qlR~~LlDPAVNlef~r 191 (342)
+.-.++.+....+-|+.|+.+..++ ...=..++-.++..|.+++.++.++- .+.+..--.--+.-+|-.-+..++.
T Consensus 825 ~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~ 904 (1293)
T KOG0996|consen 825 LTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQA 904 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHH
Confidence 3445566666677777777666555 11112233334444555555554441 0000000111234456666777778
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 019366 192 LKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEA 271 (342)
Q Consensus 192 LR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~e 271 (342)
=+.+++....++..+..+++-+++. ..+.-+.++||....++-+.--. ..++.+..|..++--.+....++++.|.+
T Consensus 905 qk~kv~~~~~~~~~l~~~i~k~~~~--i~~s~~~i~k~q~~l~~le~~~~-~~e~e~~~L~e~~~~~~~k~~E~~~~~~e 981 (1293)
T KOG0996|consen 905 QKDKVEKINEQLDKLEADIAKLTVA--IKTSDRNIAKAQKKLSELEREIE-DTEKELDDLTEELKGLEEKAAELEKEYKE 981 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH--HhcCcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8899999999999988888777663 33344567788766655544332 35677888888888888899999999988
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHHHHHHHhHH-HHHHHHHHHhhhhh
Q 019366 272 LYKHMDGLTDDVERSNEMVLMLREKLEENDH-ELEKLKHELRQKSV 316 (342)
Q Consensus 272 L~~~l~eLdeEvE~lqstl~~LQqeL~~~~~-~l~~lk~eL~~~~~ 316 (342)
...-+.++......+-+.+-..+......+. .|. ++..++.-++
T Consensus 982 ~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~ 1026 (1293)
T KOG0996|consen 982 AEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAING 1026 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHH
Confidence 8888888888877777776666666666555 344 5555555444
No 36
>PRK09039 hypothetical protein; Validated
Probab=95.68 E-value=0.95 Score=44.86 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=82.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHH
Q 019366 146 VTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKAL 225 (342)
Q Consensus 146 ~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrL 225 (342)
-.++.+++|+.++.++|.++-.. .+++..... .....+..|+..+...+..-..++..+.+ +....+. +
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~-----L~le~~~~~-~l~~~l~~l~~~l~~a~~~r~~Le~~~~~-~~~~~~~----~ 114 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADL-----LSLERQGNQ-DLQDSVANLRASLSAAEAERSRLQALLAE-LAGAGAA----A 114 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhcch----H
Confidence 45777888888888888775322 222111110 12233445555555555555555554442 2222222 2
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHh----H
Q 019366 226 MAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEN----D 301 (342)
Q Consensus 226 MAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~----~ 301 (342)
-++...|..+..+.-. .+.+.-.++..++.+++.||.++..|..-|..++......+..|..|+++|+.+ -
T Consensus 115 ~~~~~~l~~~L~~~k~-----~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~ 189 (343)
T PRK09039 115 EGRAGELAQELDSEKQ-----VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRV 189 (343)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333322 223344556667777777777777777777777777777777777777777766 3
Q ss_pred HHHHHHHHHH
Q 019366 302 HELEKLKHEL 311 (342)
Q Consensus 302 ~~l~~lk~eL 311 (342)
.++++++.++
T Consensus 190 ~~l~~~~~~~ 199 (343)
T PRK09039 190 QELNRYRSEF 199 (343)
T ss_pred HHHHHhHHHH
Confidence 4566666665
No 37
>PF13514 AAA_27: AAA domain
Probab=95.51 E-value=5.7 Score=44.76 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=40.6
Q ss_pred hHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC-cCCCCCCCCCChhhhHHHHhhhHh
Q 019366 62 GMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN-ELFIPPGTSPEPRLVINYLQTLKS 125 (342)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~-e~~i~a~~~~~p~lv~~~l~~lk~ 125 (342)
+-+-.++..+..|...++.++..+.++..+...|...... ++. .|.+-.|..+..-+.....
T Consensus 550 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~g~p~~p~~~~~Wl~~~~~ 612 (1111)
T PF13514_consen 550 ARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAA--AGLPLSPAEMRDWLARREA 612 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCChHHHHHHHHHHHH
Confidence 3566788889999999999999999998888665554333 222 3344445555555544433
No 38
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.48 E-value=5.3 Score=44.23 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=27.0
Q ss_pred hhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCC
Q 019366 72 QNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIP 106 (342)
Q Consensus 72 ~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~ 106 (342)
+....++..||.+| -+..++.+-...+++..+-.
T Consensus 70 q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~ 103 (775)
T PF10174_consen 70 QKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEF 103 (775)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHhhhccccc
Confidence 56677888899999 88999998888777755543
No 39
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.48 E-value=4.4 Score=43.31 Aligned_cols=206 Identities=15% Similarity=0.162 Sum_probs=108.0
Q ss_pred hhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHh
Q 019366 71 LQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAK 150 (342)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~ 150 (342)
.+-....|..++.+|++|..++..+++. -..+.. .. .+ +....| ..+..|+..++- .++.
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~---~~l~~~-~~-~~-~~~~~L-------~~l~~ql~~a~~-------~~~~ 255 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQ---SDLLMG-NN-AT-LATQQL-------AELNTELSRARA-------NRAA 255 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccc-CC-cc-chHHHH-------HHHHHHHHHHHH-------HHHH
Confidence 4555677899999999999999999983 222221 10 00 111222 222334433322 2223
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHhhhC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHH
Q 019366 151 REQEIAELKSAVRDLKAQLKPPLMQARRLLLD-PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKC 229 (342)
Q Consensus 151 KEQEiqel~s~l~dlk~~~~pss~qlR~~LlD-PAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKC 229 (342)
.+.....++.++..- +....+-..+.. =..+-.|+.||..+.+.+.++.++.. .|+|.++.=+.|-+..
T Consensus 256 a~a~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~-----~y~~~hP~v~~l~~qi 325 (754)
T TIGR01005 256 AEGTADSVKKALQNG-----GSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLST-----TMLANHPRVVAAKSSL 325 (754)
T ss_pred HHHHHHHHHHHHhcC-----CCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHH-----hhCCCCHHHHHHHHHH
Confidence 333333333333211 111011111111 02235677788888777777666544 6899999888888888
Q ss_pred HHHHHH-HHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 230 KTLQEE-NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 230 R~LqeE-NEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
..|+.. .+|+.+.++ .+..+++..+...+.|+.++.++..-+..+... +..+..|+.+..-+++..+.+-
T Consensus 326 ~~l~~~i~~e~~~~~~-----~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~----~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 326 ADLDAQIRSELQKITK-----SLLMQADAAQARESQLVSDVNQLKAASAQAGEQ----QVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 877776 345555443 244555555666666666666655444433221 2334455555555555555544
Q ss_pred HHHhhhh
Q 019366 309 HELRQKS 315 (342)
Q Consensus 309 ~eL~~~~ 315 (342)
..+++..
T Consensus 397 ~r~~e~~ 403 (754)
T TIGR01005 397 TNYRQAA 403 (754)
T ss_pred HHHHHHH
Confidence 4444433
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.25 E-value=4.9 Score=45.59 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc-------------ccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAV-------------SFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLA 256 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~-------------kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLA 256 (342)
.+|..+++..+..+..+++...|. ||. |=.|.+.|.++..+|-.+-.-+ |--+.
T Consensus 420 E~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknln--------lEekVklLeetv~dlEalee~~-----EQL~E 486 (1243)
T KOG0971|consen 420 ERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLN--------LEEKVKLLEETVGDLEALEEMN-----EQLQE 486 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccC--------HHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 477788888888888888776442 332 4458888988888776633211 22234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 257 LQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 257 lqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
..+....+||.+++-+.-++.++...++--+++||-+++-|.+-+.-+..|+..|+....
T Consensus 487 sn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 487 SNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888899999999999999999999999999999999999999999999998887765
No 41
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.21 E-value=5.9 Score=45.74 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 127 EEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 127 E~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
...+.+++.+.++|+.-+=-+|....-+++.+...+..+..+
T Consensus 801 ~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~ 842 (1293)
T KOG0996|consen 801 LHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQ 842 (1293)
T ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666666666666665555555443
No 42
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.20 E-value=0.024 Score=60.37 Aligned_cols=220 Identities=21% Similarity=0.264 Sum_probs=28.6
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 019366 76 DTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEI 155 (342)
Q Consensus 76 ~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEi 155 (342)
..++.++.+...-..++..|.+..+.. |. +...|..|...|..|+-....|.+++-...-.=+-+-..+...+.++
T Consensus 305 ~el~~lq~e~~~Le~el~sW~sl~~~~---~~-~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~ 380 (722)
T PF05557_consen 305 EELAELQLENEKLEDELNSWESLLQDI---GL-EFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEK 380 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CC-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 345555555566666677777744432 21 44668888888888888777777777555444444455556666666
Q ss_pred HHHHHHHHHHHHhcCCchHH---H-HHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-hhhHHHHHHHH
Q 019366 156 AELKSAVRDLKAQLKPPLMQ---A-RRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS-KMGKALMAKCK 230 (342)
Q Consensus 156 qel~s~l~dlk~~~~pss~q---l-R~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS-~~GKrLMAKCR 230 (342)
.++...+..++......... | |+.. -+..+..-||+.|+.++.+..... ..|.. ..-+.+-.-..
T Consensus 381 ~~l~~~~~~l~~~~~~~~~~~~RLerq~~---L~~kE~d~LR~~L~syd~e~~~~~-------~~~~~~~~~~~~~~l~~ 450 (722)
T PF05557_consen 381 EQLLKEIEELEASLEALKKLIRRLERQKA---LATKERDYLRAQLKSYDKEETTMN-------PSEQDTQRIKEIEDLEQ 450 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhcccc-------CchhHHHHHhhHHHHHH
Confidence 66767666666553222111 1 1111 123344555666666665432211 11110 01111111112
Q ss_pred HHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhHHHhhHHHHHHHHHHHHHhHHH
Q 019366 231 TLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKH-------MDGLTDDVERSNEMVLMLREKLEENDHE 303 (342)
Q Consensus 231 ~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~-------l~eLdeEvE~lqstl~~LQqeL~~~~~~ 303 (342)
.++..+.++-. .|..|+..+..++..+..+.....-+... +..+.+.+..++..+..|+.++.....+
T Consensus 451 ~~~~~~~ele~-----~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~ 525 (722)
T PF05557_consen 451 LVDEYKAELEA-----QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQE 525 (722)
T ss_dssp ------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 55666666666666555544443332222 2234556677888888888888888888
Q ss_pred HHHHHHHHhhh
Q 019366 304 LEKLKHELRQK 314 (342)
Q Consensus 304 l~~lk~eL~~~ 314 (342)
+..|+.+|...
T Consensus 526 ~~~Le~~l~~~ 536 (722)
T PF05557_consen 526 LEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888763
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.16 E-value=1.4 Score=46.85 Aligned_cols=250 Identities=20% Similarity=0.246 Sum_probs=135.1
Q ss_pred ccccCCCchhhH--HHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC-cCCCCCCCCCChhhhHHHHhhhHhhHH
Q 019366 52 VEETAPGVATGM--ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN-ELFIPPGTSPEPRLVINYLQTLKSSEE 128 (342)
Q Consensus 52 ~~~~~~~~~t~~--il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~-e~~i~a~~~~~p~lv~~~l~~lk~sE~ 128 (342)
+++++...+.-- |=-|++.+.+.+..+...+..+..|...+.-|-..+.+ ++-+ +-.....+.+++++..|+..-.
T Consensus 101 l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~-~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 101 LDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI-NTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444322 33456666666666666666666666666666654433 1111 2223456778888999999999
Q ss_pred HHHHHHHHHHhH---HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHH-HhhhCh--hhHHHHH-HHHHHHHH---
Q 019366 129 MLKEQLEKAKKK---EAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR-RLLLDP--AIHEEFR-RLKNLVEE--- 198 (342)
Q Consensus 129 ~LkeQl~eakrR---Envll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR-~~LlDP--AVNlef~-rLR~eLee--- 198 (342)
.|..+|..+++. |-++-..+- -.+|.|.-.|+-++..|.--...++ ..-.|| ....+|. .|..-|++
T Consensus 180 rl~~~l~~~r~~ld~Etllr~d~~---n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRa 256 (546)
T KOG0977|consen 180 RLREELARARKQLDDETLLRVDLQ---NRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRA 256 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHH
Confidence 999999888765 444333333 3344555555555555544333332 333344 2333332 23333332
Q ss_pred -HHHHHHHHHHhhhhcccCCCchhhHHHHHHHHH-----------HHHHHHHHhhhhh--cccchhhhHHHHHHHHHHHH
Q 019366 199 -KDKKVKELEENIAAVSFTANSKMGKALMAKCKT-----------LQEENDEIGRQNE--EGETHQLSVKLALQKSLNAE 264 (342)
Q Consensus 199 -~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~-----------LqeENEELGr~ls--eGria~Le~eLAlqK~~~eE 264 (342)
++.-....+.++.-|- . +=+.+.++ ..+|...+-..++ .+++..||+.-+.+-+.+++
T Consensus 257 qye~~~~~nR~diE~~Y---~-----~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~d 328 (546)
T KOG0977|consen 257 QYEAISRQNRKDIESWY---K-----RKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIED 328 (546)
T ss_pred HHHHHHHHhHHHHHHHH---H-----HHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHH
Confidence 2233334444443332 1 11112221 3355555554444 36778888888888888888
Q ss_pred HHHHHHHH----HHHHhhhhhHHHhhHHHHHHHHHHHHHh-------HHHHHHHHHHHhh
Q 019366 265 LKSQFEAL----YKHMDGLTDDVERSNEMVLMLREKLEEN-------DHELEKLKHELRQ 313 (342)
Q Consensus 265 Lrk~~~eL----~~~l~eLdeEvE~lqstl~~LQqeL~~~-------~~~l~~lk~eL~~ 313 (342)
|+.++.+- ...|.+.+.++.+|....-.|-.|+..+ +.+|+.+...|+.
T Consensus 329 L~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 329 LEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEG 388 (546)
T ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhcc
Confidence 88775543 4456677777777777766666666554 4444444444443
No 44
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.15 E-value=4.7 Score=41.78 Aligned_cols=202 Identities=17% Similarity=0.143 Sum_probs=94.9
Q ss_pred hhhchhhhHhhHHHHHHHHHHHH-HHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 019366 71 LQNCKDTLATCQLELEAAKSEIQ-KWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFA 149 (342)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~e~~-kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA 149 (342)
.+.....|.+.+.++++-..+|. .|.. ..-+...|+.++..=.++..|+.++...-..+-..|+
T Consensus 33 ~~a~~~~l~q~q~ei~~~~~~i~~~~~~---------------~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 33 AAADDKQLKQIQKEIAALEKKIREQQDQ---------------RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 33333455666666666666662 3333 2345566666666666677777666666555555555
Q ss_pred hHHHHHHHHHH-----------HHHHHHHhcCCchHHHHHhhhChh----hHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 150 KREQEIAELKS-----------AVRDLKAQLKPPLMQARRLLLDPA----IHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 150 ~KEQEiqel~s-----------~l~dlk~~~~pss~qlR~~LlDPA----VNlef~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
..++.+..+.. +|..+..+...++..++-+.-||. +-.+|..|-..+.+.-..++..+..|.+++
T Consensus 98 ~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~ 177 (420)
T COG4942 98 DLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVR 177 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444433 334443332222222333333332 334455555555555555555555555544
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHH
Q 019366 215 FTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLR 294 (342)
Q Consensus 215 FtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQ 294 (342)
+.+.+.=..|..-- +.+ -.+...|...+.-+++....|-+.+..-.+.+.+|-....++-..|.-+.
T Consensus 178 --------~~iaaeq~~l~~~~---~eq--~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 178 --------AEIAAEQAELTTLL---SEQ--RAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred --------HHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11222222222000 000 01223444455555555555555555555555555555555444444444
Q ss_pred HHHHHh
Q 019366 295 EKLEEN 300 (342)
Q Consensus 295 qeL~~~ 300 (342)
.+..+.
T Consensus 245 ~~aA~~ 250 (420)
T COG4942 245 AAAAKA 250 (420)
T ss_pred HHHHHH
Confidence 444433
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.15 E-value=8.8 Score=46.43 Aligned_cols=229 Identities=20% Similarity=0.256 Sum_probs=129.2
Q ss_pred HHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhh-HhhHHH---HHHHHHHHH
Q 019366 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTL-KSSEEM---LKEQLEKAK 138 (342)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~l-k~sE~~---LkeQl~eak 138 (342)
.|..|++.+++-..+++.++.+..++...|..-...+.. .+-....|... +..|+. |..+++...
T Consensus 937 e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~-----------~~e~~~kL~kekk~lEe~~~~l~~~l~~~e 1005 (1930)
T KOG0161|consen 937 EVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS-----------LDENISKLSKEKKELEERIRELQDDLQAEE 1005 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777666664443 11112222222 223333 333455555
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc---hHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 019366 139 KKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP---LMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSF 215 (342)
Q Consensus 139 rREnvll~rLA~KEQEiqel~s~l~dlk~~~~ps---s~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kF 215 (342)
.+=+-+-...+..|+.+.++...+..-+....-- .-.+..-+ +-++..+.+.......++..|.-.-+
T Consensus 1006 ek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el---------~~~~e~~~~~~~~~~el~~~l~kke~ 1076 (1930)
T KOG0161|consen 1006 EKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL---------KDLQESIEELKKQKEELDNQLKKKES 1076 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777778888888777665543331000 00111111 11122222222222222222221111
Q ss_pred CCCc--hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHH
Q 019366 216 TANS--KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLML 293 (342)
Q Consensus 216 tPqS--~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~L 293 (342)
.-.+ .-...+-+-...|+....+|.. +|..|.-++...+.....++++..+|..-++++.++.+....+...+
T Consensus 1077 El~~l~~k~e~e~~~~~~l~k~i~eL~~-----~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q 1151 (1930)
T KOG0161|consen 1077 ELSQLQSKLEDEQAEVAQLQKQIKELEA-----RIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQ 1151 (1930)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 1111 0111122233344455555554 67889999999999999999999999999999999999987777777
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhh
Q 019366 294 REKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 294 QqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
++--.+...++.+|...|+....
T Consensus 1152 ~e~~~k~e~e~~~l~~~leee~~ 1174 (1930)
T KOG0161|consen 1152 LELNKKREAEVQKLRRDLEEETL 1174 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666777788888877776544
No 46
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.07 E-value=1.7 Score=47.57 Aligned_cols=101 Identities=22% Similarity=0.303 Sum_probs=82.1
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 019366 134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (342)
Q Consensus 134 l~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~ 213 (342)
|+++.-||..|+.||..++-|+..++..+.-.++-. --++.+.+.|+...+..+.+...++++|.-.
T Consensus 22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~-------------~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 22 LQESASKEAYLQQRILELENELKQLRQELSNVQAEN-------------ERLSQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999887654441 1234566788888888888889999999988
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhh
Q 019366 214 SFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLS 252 (342)
Q Consensus 214 kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le 252 (342)
||- -.|||+-|--|.+||=-|-+++|.-|-.+.|
T Consensus 89 K~r-----E~rll~dyselEeENislQKqvs~Lk~sQve 122 (717)
T PF09730_consen 89 KFR-----EARLLQDYSELEEENISLQKQVSVLKQSQVE 122 (717)
T ss_pred HHH-----HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 864 5679999999999999999998876655544
No 47
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.06 E-value=4.1 Score=43.00 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 019366 142 AAFIVTFAKREQEIAELKSAVR 163 (342)
Q Consensus 142 nvll~rLA~KEQEiqel~s~l~ 163 (342)
+++..|+-.+|-|++.+.-+++
T Consensus 234 ~~f~~r~~~~E~e~rn~~E~~~ 255 (554)
T KOG4677|consen 234 LIFLKRTLSKEIEFRNELEVRQ 255 (554)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6778888999999887766554
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.03 E-value=5.7 Score=42.46 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAV 213 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~ 213 (342)
..|.....+...++.++..++..+
T Consensus 209 ~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 209 ESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.97 E-value=4.9 Score=45.83 Aligned_cols=146 Identities=13% Similarity=0.212 Sum_probs=63.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCch
Q 019366 141 EAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSK 220 (342)
Q Consensus 141 Envll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~ 220 (342)
+..+...+..++.++..+..+....+..+......+..-+ .-.-+..+..++.........+..++..+.-..|+|+-
T Consensus 390 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~- 467 (1201)
T PF12128_consen 390 EEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQEL-RQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEE- 467 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHH-
Confidence 3444444455555555555554444444332222222222 11122333444555555555566666666666666653
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 221 MGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 221 ~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
+..++.+..+.+..-... ......+...+.....+++.++.....+..+..+++.++..+..|+..|.
T Consensus 468 -----~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 468 -----KEQLEQADKRLEQAQEQQ-----NQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred -----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334444444443332211 12222222333334444444444444444444444444444444444443
No 50
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.86 E-value=8.9 Score=45.25 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhhhh--cccchhhhHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhHHHhhHHHHHHHH
Q 019366 227 AKCKTLQEENDEIGRQNE--EGETHQLSVKLALQKSLNAELKSQF----------EALYKHMDGLTDDVERSNEMVLMLR 294 (342)
Q Consensus 227 AKCR~LqeENEELGr~ls--eGria~Le~eLAlqK~~~eELrk~~----------~eL~~~l~eLdeEvE~lqstl~~LQ 294 (342)
+++..++++..+|...+. ...+..+..++......+..+.+.. ++|...+......++.+...+..++
T Consensus 383 eEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE 462 (1486)
T PRK04863 383 ARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLE 462 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544332 1234444444444444444443331 4555566666666666666666666
Q ss_pred HHHHHhHHHHHHHHHHHhhhh
Q 019366 295 EKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 295 qeL~~~~~~l~~lk~eL~~~~ 315 (342)
+++...+..++.+...+..+.
T Consensus 463 ~kL~~lea~leql~~~~~~l~ 483 (1486)
T PRK04863 463 QKLSVAQAAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665554443
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.83 E-value=3.1 Score=45.35 Aligned_cols=174 Identities=20% Similarity=0.245 Sum_probs=89.5
Q ss_pred hHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc---hHHHHHhhhChhhHHHHHHH
Q 019366 116 VINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP---LMQARRLLLDPAIHEEFRRL 192 (342)
Q Consensus 116 v~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~ps---s~qlR~~LlDPAVNlef~rL 192 (342)
+..+|+..+..|..|+.|+.-..-=|..+-..|..+.++..++..-++.|-.+.... ..+|.+=|- +-.+.
T Consensus 430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~------eE~~~ 503 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA------EERRQ 503 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 334444455566666666555555555666666667777777777666664442211 122211110 11222
Q ss_pred HHHHHHHHHHHHHH--HHhhhhcccCC--CchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHH
Q 019366 193 KNLVEEKDKKVKEL--EENIAAVSFTA--NSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ 268 (342)
Q Consensus 193 R~eLee~~~klk~a--q~eL~A~kFtP--qS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~ 268 (342)
|..++.-=.+.+.+ +++-.|+..-+ .+..+ ---.-||.=.++.| ..+.+|..+|-...+.+-.|++.
T Consensus 504 R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~-e~~e~~r~r~~~lE--------~E~~~lr~elk~kee~~~~~e~~ 574 (697)
T PF09726_consen 504 RASLEKQLQEERKARKEEEEKAARALAQAQATRQ-ECAESCRQRRRQLE--------SELKKLRRELKQKEEQIRELESE 574 (697)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccccchhccc-hhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332211111111 11112333211 11111 11112332222211 23566777777888888888888
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
.++|..+..+-..|+|.|-+.|..+|.+-.+++.-|
T Consensus 575 ~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 575 LQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888766666789999999988888766554433
No 52
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.83 E-value=12 Score=45.04 Aligned_cols=130 Identities=22% Similarity=0.323 Sum_probs=82.0
Q ss_pred HhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHH
Q 019366 69 ESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTF 148 (342)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rL 148 (342)
+++..+-..+.+++.+..+-++++.+..+ ...+-.+.+..|...=+.++.+......|-.-|...|
T Consensus 654 ~~~~~l~e~~~~l~~ev~~ir~~l~k~~~--------------~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i 719 (1822)
T KOG4674|consen 654 ENLKKLQEDFDSLQKEVTAIRSQLEKLKN--------------ELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTI 719 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444 2234456677777777888888888888889999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCch---HHHH--HhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 019366 149 AKREQEIAELKSAVRDLKAQLKPPL---MQAR--RLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFT 216 (342)
Q Consensus 149 A~KEQEiqel~s~l~dlk~~~~pss---~qlR--~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFt 216 (342)
+..++.++.+...+......+.... ..|+ ..++ -..+.||..++...-.+...++..+.-+.|.
T Consensus 720 ~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll----~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~ 788 (1822)
T KOG4674|consen 720 SKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLL----KETEERLSQELEKLSAEQESLQLLLDNLQTQ 788 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888887766554443222 1221 2222 2245677777777777777777666555543
No 53
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.73 E-value=6.2 Score=41.00 Aligned_cols=237 Identities=20% Similarity=0.265 Sum_probs=112.7
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHhccC----cCCCCCCCCCChhhhHHHHhhhH----hhHHHHHHHHHHHHhHHHHHHH
Q 019366 75 KDTLATCQLELEAAKSEIQKWHSSFQN----ELFIPPGTSPEPRLVINYLQTLK----SSEEMLKEQLEKAKKKEAAFIV 146 (342)
Q Consensus 75 ~~~~~~~~~~l~~a~~e~~kW~~~f~~----e~~i~a~~~~~p~lv~~~l~~lk----~sE~~LkeQl~eakrREnvll~ 146 (342)
.+.++-++.+|..+..|+.+-+...+. ...++.-...--++..+.+.+|+ ..+..++.+-..+......|+.
T Consensus 108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~ 187 (511)
T PF09787_consen 108 SSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLK 187 (511)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 345666666666666666544443332 12332222222233333334444 3344444555556666788999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcC-------Cc-hHHHHHhhhChhhHHHHH----HHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 147 TFAKREQEIAELKSAVRDLKAQLK-------PP-LMQARRLLLDPAIHEEFR----RLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 147 rLA~KEQEiqel~s~l~dlk~~~~-------ps-s~qlR~~LlDPAVNlef~----rLR~eLee~~~klk~aq~eL~A~k 214 (342)
|...++.+.+.|......++.-.. -. ...+-..+.. ....+|. +-...|..+++.+..++.....=.
T Consensus 188 rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~-~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~ 266 (511)
T PF09787_consen 188 RTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGE-SEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEG 266 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 999999777777654433321100 00 0000000100 0111111 122334444555555555333323
Q ss_pred cCCCc--hhhHHHHHHHHHHHHHHHHHhhhhhcccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHhhH
Q 019366 215 FTANS--KMGKALMAKCKTLQEENDEIGRQNEEGETHQ--LSVKLALQKSLNAELKSQFEALYKHMDGL---TDDVERSN 287 (342)
Q Consensus 215 FtPqS--~~GKrLMAKCR~LqeENEELGr~lseGria~--Le~eLAlqK~~~eELrk~~~eL~~~l~eL---deEvE~lq 287 (342)
|++.. .-=-.|..-|..+++|+..|-.++...++.- ++.++.. .++-+++..+++...+... +.|++.+.
T Consensus 267 ~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~ 343 (511)
T PF09787_consen 267 FDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG---EQESFREQPQELSQQLEPELTTEAELRLYY 343 (511)
T ss_pred cccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 44311 0113477788899999999998875444322 2222222 2233333333333333222 55555555
Q ss_pred HHHHHHHH-----------HHHHhHHHHHHHHHHHhhhh
Q 019366 288 EMVLMLRE-----------KLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 288 stl~~LQq-----------eL~~~~~~l~~lk~eL~~~~ 315 (342)
.-++.+++ ++..+..++.+|...|..+.
T Consensus 344 ~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 344 QELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555554 44556667777776665544
No 54
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.67 E-value=6.3 Score=45.01 Aligned_cols=192 Identities=20% Similarity=0.258 Sum_probs=110.7
Q ss_pred CCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHH--HhhhChhh
Q 019366 108 GTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR--RLLLDPAI 185 (342)
Q Consensus 108 ~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR--~~LlDPAV 185 (342)
|..+....+.-.|+.|.+.+..++-+. ..|+..|.+|+.+.++-.-.+....--.+.++ .++.--.-
T Consensus 664 Gs~~~~a~~L~~l~~l~~~~~~~~~~q-----------~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~ 732 (1174)
T KOG0933|consen 664 GSRSKGADLLRQLQKLKQAQKELRAIQ-----------KELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLE 732 (1174)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444556778888887777555443 34556666666666644333322111111121 22222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 019366 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (342)
Q Consensus 186 Nlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eEL 265 (342)
+-+|.++-..++.....+++++.++..-. -.=|.-+.+..+|..--.+ .....++|+..|+-+|-..+..+++-
T Consensus 733 ~~e~~~~~~~~~~~~e~v~e~~~~Ike~~-----~~~k~~~~~i~~lE~~~~d-~~~~re~rlkdl~keik~~k~~~e~~ 806 (1174)
T KOG0933|consen 733 QNEFHKLLDDLKELLEEVEESEQQIKEKE-----RALKKCEDKISTLEKKMKD-AKANRERRLKDLEKEIKTAKQRAEES 806 (1174)
T ss_pred cChHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhH-hhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555543211 0011112222233221111 12235677888888888888888887
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 266 KSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 266 rk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
++..+.=+.-.+-+.-+.|.|+..+..+++++.....++..|+.++.....
T Consensus 807 ~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~ 857 (1174)
T KOG0933|consen 807 SKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA 857 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788888888888888888888888888888887776655
No 55
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.65 E-value=1.4 Score=39.98 Aligned_cols=175 Identities=23% Similarity=0.358 Sum_probs=113.4
Q ss_pred HHHhhHHhhhhchhhhHh-------hHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHH
Q 019366 63 MILSLRESLQNCKDTLAT-------CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE 135 (342)
Q Consensus 63 ~il~lr~~l~~~~~~~~~-------~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~ 135 (342)
+|-.+.+.|...+..+++ ++.++..+..++.+|..... ..+..|...--+........+...=..++.++.
T Consensus 31 ~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~--~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~ 108 (221)
T PF04012_consen 31 AIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE--LALAAGREDLAREALQRKADLEEQAERLEQQLD 108 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666654 56678888999999998443 356666555555556666666777778888999
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHH--HHhh---hChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 136 KAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQA--RRLL---LDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 136 eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~ql--R~~L---lDPAVNlef~rLR~eLee~~~klk~aq~eL 210 (342)
.+.....-|-..|...+..|.++++....|++.+.....+. ..++ --.....-|.||+..+...+.+..... +|
T Consensus 109 ~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~-el 187 (221)
T PF04012_consen 109 QAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASA-EL 187 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 99999888999999999999999998888877754322111 1111 112334567888888887777655433 22
Q ss_pred hhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHH
Q 019366 211 AAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKS 260 (342)
Q Consensus 211 ~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~ 260 (342)
.. ++.+ +..+.+++|..-.. . +.+|+.+|.
T Consensus 188 ~~---~~~~------------~e~~l~~~~~~~~~----~-~~~La~LK~ 217 (221)
T PF04012_consen 188 AD---SDQD------------LEAELEELERDSSV----S-EDELAALKA 217 (221)
T ss_pred cc---Cccc------------HHHHHHHhcCCCcc----h-HHHHHHHHh
Confidence 22 2222 66777777764432 2 666666554
No 56
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.60 E-value=11 Score=43.23 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHH----hhhhh--cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHH
Q 019366 223 KALMAKCKTLQEENDEI----GRQNE--EGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREK 296 (342)
Q Consensus 223 KrLMAKCR~LqeENEEL----Gr~ls--eGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqe 296 (342)
+..+..||.+-..+++. |..++ ++++-.|..++.....++..|+.++.++..-+....++.+-....|..|+-.
T Consensus 372 ~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~ 451 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKK 451 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45566666665555444 33332 3455556666666666666666666555555555555555555555555555
Q ss_pred HHHhHHHHHHHH
Q 019366 297 LEENDHELEKLK 308 (342)
Q Consensus 297 L~~~~~~l~~lk 308 (342)
++...++|..|+
T Consensus 452 i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 452 IENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 57
>PRK03918 chromosome segregation protein; Provisional
Probab=94.47 E-value=8.4 Score=41.40 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhhhccc
Q 019366 196 VEEKDKKVKELEENIAAVSF 215 (342)
Q Consensus 196 Lee~~~klk~aq~eL~A~kF 215 (342)
+.+...++.....+|.-..|
T Consensus 565 ~~~~~~~~~~~~~~l~~L~~ 584 (880)
T PRK03918 565 LDELEEELAELLKELEELGF 584 (880)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 33333344444444444443
No 58
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.43 E-value=7.6 Score=42.11 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhc--ccchhhhHHHHHHHHHHHHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE--GETHQLSVKLALQKSLNAELKS 267 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lse--Gria~Le~eLAlqK~~~eELrk 267 (342)
.+|+..+.+...++.....+....+ +++.|+-...+-+.|+.++..+-.++.. .+|..|.+.+-.-.....+++.
T Consensus 148 ~~l~e~l~k~~~~~~~~ie~~a~~~---e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s 224 (629)
T KOG0963|consen 148 RNLKERLRKLEQLLEIFIENAANET---EEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKS 224 (629)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4566666666666666666555555 6788888999999999998888776542 2333443333333333333333
Q ss_pred HHHH----HHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 268 QFEA----LYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 268 ~~~e----L~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
.|++ .+.-|--+-.+++.-|.-|++||.+...+..++..-.+
T Consensus 225 ~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 225 KYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3211 11112222234445555555555555555554444433
No 59
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.42 E-value=8.4 Score=41.21 Aligned_cols=93 Identities=22% Similarity=0.294 Sum_probs=69.3
Q ss_pred HHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc-----------hHHHHHhhhCh----
Q 019366 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP-----------LMQARRLLLDP---- 183 (342)
Q Consensus 119 ~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~ps-----------s~qlR~~LlDP---- 183 (342)
.+..++.+-++=|+.|+...-|=+.|+-+.=.+|.|...|...|..+|..-... ...+|.++-+-
T Consensus 29 ~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~r 108 (546)
T KOG0977|consen 29 AASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARER 108 (546)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHH
Confidence 345578888888899999999999999999999999999999999998874222 24455555444
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019366 184 -AIHEEFRRLKNLVEEKDKKVKELEENIA 211 (342)
Q Consensus 184 -AVNlef~rLR~eLee~~~klk~aq~eL~ 211 (342)
-+-..|.+|+.++.+++.++..+...+.
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~~ 137 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKERR 137 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 2445677777777777777776655443
No 60
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.38 E-value=6.5 Score=39.72 Aligned_cols=208 Identities=14% Similarity=0.180 Sum_probs=107.5
Q ss_pred HHHHHHhccCcCC-----CC-CCCCCChhhhHHHHhhhHhh--HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH
Q 019366 92 IQKWHSSFQNELF-----IP-PGTSPEPRLVINYLQTLKSS--EEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVR 163 (342)
Q Consensus 92 ~~kW~~~f~~e~~-----i~-a~~~~~p~lv~~~l~~lk~s--E~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~ 163 (342)
++.|++.+.=... |. .-.+++|.....-+..+-+. +..+......+..--..+-.++...++++.+....+.
T Consensus 106 ~~~l~~~l~v~~~~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~ 185 (498)
T TIGR03007 106 ITKLRKNISISLAGRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLK 185 (498)
T ss_pred HHHHHhCcEEeecCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677775433111 00 34567887665544443221 0001111112222345677788889999999999999
Q ss_pred HHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHH-------HHHHhhhh---cccCCCchhhHHHHHHHHHHH
Q 019366 164 DLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVK-------ELEENIAA---VSFTANSKMGKALMAKCKTLQ 233 (342)
Q Consensus 164 dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk-------~aq~eL~A---~kFtPqS~~GKrLMAKCR~Lq 233 (342)
++|..+.-....- ...+...+..+...+...+.++. .++..+.. .-++..++....|..+...|+
T Consensus 186 ~f~~~~~~~~~~~-----~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~ 260 (498)
T TIGR03007 186 AFKQENGGILPDQ-----EGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALE 260 (498)
T ss_pred HHHHhCcccCccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHH
Confidence 9887653211000 11222334444444444444444 44443321 112223445566778888888
Q ss_pred HHHHHHhhhhhccc--chhhhHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhhhHHHhhHHHHHHHHHHH
Q 019366 234 EENDEIGRQNEEGE--THQLSVKLALQKSLNAELKS--------------QFEALYKHMDGLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 234 eENEELGr~lseGr--ia~Le~eLAlqK~~~eELrk--------------~~~eL~~~l~eLdeEvE~lqstl~~LQqeL 297 (342)
.+-.+|......++ +..|..+++..+......-. .+..|..-+..++.+++.++..+..|++++
T Consensus 261 ~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~ 340 (498)
T TIGR03007 261 KQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARI 340 (498)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877666654 44455555555554332211 123355555666666666666666666555
Q ss_pred HHhHHHH
Q 019366 298 EENDHEL 304 (342)
Q Consensus 298 ~~~~~~l 304 (342)
.+.+.++
T Consensus 341 ~~~~~~~ 347 (498)
T TIGR03007 341 ERLESLL 347 (498)
T ss_pred HHHHHHH
Confidence 4444443
No 61
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=94.33 E-value=0.66 Score=47.75 Aligned_cols=187 Identities=13% Similarity=0.157 Sum_probs=45.7
Q ss_pred CCCchhhHHHhhHHhh-----hhchhhhHhhHHHHHHHHHHHHHHHHhc-cCcCCCC-------CCCCCChhhhHHHHhh
Q 019366 56 APGVATGMILSLRESL-----QNCKDTLATCQLELEAAKSEIQKWHSSF-QNELFIP-------PGTSPEPRLVINYLQT 122 (342)
Q Consensus 56 ~~~~~t~~il~lr~~l-----~~~~~~~~~~~~~l~~a~~e~~kW~~~f-~~e~~i~-------a~~~~~p~lv~~~l~~ 122 (342)
-+++--|.+|+|+.-- ...++.+.++...++.-+.+|......+ +...-+. +.....|..+..
T Consensus 60 l~dikd~s~l~l~~~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---- 135 (424)
T PF03915_consen 60 LSDIKDGSVLSLNEEPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSA---- 135 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCeeEEEecccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcc----
Confidence 3677888899888655 3566777788878888888887777765 3322211 001111110000
Q ss_pred hHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHH
Q 019366 123 LKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK 202 (342)
Q Consensus 123 lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~k 202 (342)
.. -..... ....+.-.|++.++..|.-||+.+..... .++..+.....+
T Consensus 136 ~~--~~~~~~-------------~~~~~~~~Ev~~LRreLavLRQl~~~~~~----------------~~~~~i~~i~~k 184 (424)
T PF03915_consen 136 PS--SSSSPQ-------------STSKSDLKEVQSLRRELAVLRQLYSEFQS----------------EVKESISSIREK 184 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc--cccCcC-------------CCCcchHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH
Confidence 00 000000 01111177899999999998888654432 223333333333
Q ss_pred HHHHHHhhhhcccCCCc-------------hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 019366 203 VKELEENIAAVSFTANS-------------KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (342)
Q Consensus 203 lk~aq~eL~A~kFtPqS-------------~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~ 269 (342)
+...+. .+.+...++ ..-..|..|..-||.=.|+|.+-+..-+|-+....+....+.+..+.+.+
T Consensus 185 i~~~k~--~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L 262 (424)
T PF03915_consen 185 IKKVKS--ASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKEL 262 (424)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHH
Confidence 333222 222222222 23345777778899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 019366 270 EALYKHMDGL 279 (342)
Q Consensus 270 ~eL~~~l~eL 279 (342)
.+|..||...
T Consensus 263 ~~m~~~i~~~ 272 (424)
T PF03915_consen 263 KKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9888888543
No 62
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.30 E-value=5.3 Score=38.46 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 288 EMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 288 stl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
..+..+++++...+.++..++..+..
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666677777777666665554
No 63
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.19 E-value=9.2 Score=42.17 Aligned_cols=191 Identities=18% Similarity=0.244 Sum_probs=97.3
Q ss_pred hHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHH---hhhHhhHHHHHHHHHHHH
Q 019366 62 GMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYL---QTLKSSEEMLKEQLEKAK 138 (342)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l---~~lk~sE~~LkeQl~eak 138 (342)
++|.+|.++|..-...+..+.-.|..-.-++++-.+.+..-.-..++..-.-..+...| +.|-.....+..-..+++
T Consensus 356 tti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq 435 (786)
T PF05483_consen 356 TTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQ 435 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666665554444444445555555555544433321111122111111111111 112222233344445667
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 019366 139 KKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTAN 218 (342)
Q Consensus 139 rREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPq 218 (342)
-+|.-+.--|-++|.++++|.-++........ .+.+.+++++.+|..-++-
T Consensus 436 ~~eqel~~llq~~ekev~dLe~~l~~~~~~eq---------------------------~yskQVeeLKtELE~EkLK-- 486 (786)
T PF05483_consen 436 GTEQELTGLLQIREKEVHDLEIQLTTIKESEQ---------------------------HYSKQVEELKTELEQEKLK-- 486 (786)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhH---------------------------HHHHHHHHHHHHHHHHHHH--
Confidence 77888888899999999999998877654422 2223333333333322211
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhcccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019366 219 SKMGKALMAKCKTLQEENDEIGRQNEEGET--HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVE 284 (342)
Q Consensus 219 S~~GKrLMAKCR~LqeENEELGr~lseGri--a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE 284 (342)
-.-|.++|..|+-||..|.-..+.+-+ ..+...+...+.+.+-+-++.+.|...-..|.++++
T Consensus 487 ---N~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnele 551 (786)
T PF05483_consen 487 ---NTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELE 551 (786)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123777899999999998887776532 223334444444444444444444444444433333
No 64
>PRK01156 chromosome segregation protein; Provisional
Probab=94.19 E-value=10 Score=41.30 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 019366 151 REQEIAELKSAV 162 (342)
Q Consensus 151 KEQEiqel~s~l 162 (342)
..+++.++...+
T Consensus 592 ~~~~l~~l~~~l 603 (895)
T PRK01156 592 IKKQLNDLESRL 603 (895)
T ss_pred HHHHHHHHHhhH
Confidence 333333333333
No 65
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=94.17 E-value=6.3 Score=38.82 Aligned_cols=204 Identities=17% Similarity=0.218 Sum_probs=125.2
Q ss_pred cCCCchhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC-cCCCCCCCCCChhhhHHHHhhhHhhHHHHHHH
Q 019366 55 TAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN-ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQ 133 (342)
Q Consensus 55 ~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~-e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQ 133 (342)
.+.+..+..+-.|..-.++|...|..|...|..=..++.+-+..|.. |...|. ..-+ ..|++-=.+++..
T Consensus 66 ~g~~~~~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~Wtr~~S--~~~~-------~~l~~~~~k~~~~ 136 (356)
T cd09237 66 LKSSSVDSQLELLRPQSASWVNEIDSSYNDLDEEMKEIEKMRKKILAKWTQSPS--SSLT-------ASLREDLVKLKKS 136 (356)
T ss_pred ccCCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--hhhh-------HHHHHHHHHHHHH
Confidence 34445566788899999999999999999999999999999987766 222211 1111 2355555667778
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc-CCchHHHHHhhhC----h---hhHHHHHHHHHHHHHHH---HH
Q 019366 134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL-KPPLMQARRLLLD----P---AIHEEFRRLKNLVEEKD---KK 202 (342)
Q Consensus 134 l~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~-~pss~qlR~~LlD----P---AVNlef~rLR~eLee~~---~k 202 (342)
|..|..=-+.+...+..-+..|.-|......|.... .|++..-.-.++| + .|...+.+||..+.+.. .+
T Consensus 137 L~~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~e 216 (356)
T cd09237 137 LVEASASDEKLFSLVDPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEE 216 (356)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888877666666654 2332111213444 3 47777777776554433 22
Q ss_pred HHHHHHhh--hhcccCCCchhhHHHHHHHHHHHH-HH----HHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 203 VKELEENI--AAVSFTANSKMGKALMAKCKTLQE-EN----DEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALY 273 (342)
Q Consensus 203 lk~aq~eL--~A~kFtPqS~~GKrLMAKCR~Lqe-EN----EELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~ 273 (342)
=...-.+| .+-+ +-... .||.--+.+.. +. +||++ =..-...|+..+..|...+.+|+..+.++.
T Consensus 217 R~~~~~~Lk~k~~~---DDI~~-~ll~~~~~~~~~~e~lF~~eL~k--f~p~~~~l~~~~~~Q~~ll~el~~~~~~f~ 288 (356)
T cd09237 217 RQRVLKDLKQKIHN---DDISD-ILILNSKSKSEIEKQLFPEELEK--FKPLQNRLEATIFKQSSLINELKIELDKLF 288 (356)
T ss_pred HHHHHHHHHHHHhc---cchHH-HHHHhcccccchHHHHHHHHHHH--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 2222 22333 34433322211 10 26665 223456777778888888888887777664
No 66
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.83 E-value=0.48 Score=42.89 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
......|+..+..+..|+..+..+...|.+.+..++.++-.+..||-++......+.+|+.
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444444443
No 67
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.82 E-value=6.1 Score=37.39 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc-------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHH
Q 019366 223 KALMAKCKTLQEENDEIGRQNEE-------GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLRE 295 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~lse-------Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQq 295 (342)
--|.+..+.+..+-+.+....-. .++..+..........+..++....++..-+..|..+++.++.+...|..
T Consensus 165 ~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 165 SDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 33555566666666555544432 25666666666666666667777777777777777777777777666666
Q ss_pred HHHHhHHH
Q 019366 296 KLEENDHE 303 (342)
Q Consensus 296 eL~~~~~~ 303 (342)
+|..+...
T Consensus 245 ~l~~le~~ 252 (312)
T PF00038_consen 245 QLRELEQR 252 (312)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 66655443
No 68
>PRK09039 hypothetical protein; Validated
Probab=93.73 E-value=8 Score=38.45 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 019366 228 KCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (342)
Q Consensus 228 KCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~ 270 (342)
....|+++.+.|-++ ++.|+..|+..+....+.+.++.
T Consensus 138 ~V~~L~~qI~aLr~Q-----la~le~~L~~ae~~~~~~~~~i~ 175 (343)
T PRK09039 138 QVELLNQQIAALRRQ-----LAALEAALDASEKRDRESQAKIA 175 (343)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544 44455555444444444333333
No 69
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.66 E-value=4.5 Score=37.45 Aligned_cols=96 Identities=23% Similarity=0.256 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc-----cchhhhHHHHHHHHHH
Q 019366 188 EFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEG-----ETHQLSVKLALQKSLN 262 (342)
Q Consensus 188 ef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseG-----ria~Le~eLAlqK~~~ 262 (342)
.|..||.++.+.+++.......+..+. .--++|..-+..+++|+++|.+.+..- ..+.+...+....+..
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~-----~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l 102 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEIS-----QENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKEL 102 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888877777776654 456788888889999999998877532 1233444444555555
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHH
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNE 288 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqs 288 (342)
..|+-.++-|..-+..+..|.+.+..
T Consensus 103 ~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 103 KDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666555543
No 70
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.65 E-value=14 Score=42.36 Aligned_cols=129 Identities=19% Similarity=0.276 Sum_probs=78.6
Q ss_pred chhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 019366 74 CKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQ 153 (342)
Q Consensus 74 ~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQ 153 (342)
....++.+|.+|+.+..+|....+.+.. +- -...-+++........-..|++.+...+.-=..+.-.+--+..
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~~~~~~i~q---~~----~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~ 748 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIEDIDQKIDQ---LN----NNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGK 748 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Confidence 3345666666666666666555442221 00 0122344445555555556666665555555667778888899
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHH---hhhChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 019366 154 EIAELKSAVRDLKAQLKPPLMQARR---LLLDPAIHEEFRRLKNLVEEKDKKVKELEEN 209 (342)
Q Consensus 154 Eiqel~s~l~dlk~~~~pss~qlR~---~LlDPAVNlef~rLR~eLee~~~klk~aq~e 209 (342)
+|..+++.++.+..+...-.+-+-+ .-++|-.-...+.|..+|.+...++...+.+
T Consensus 749 ~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~e 807 (1200)
T KOG0964|consen 749 ELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREE 807 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999998887764333233333 3367777777777777888777777755443
No 71
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.57 E-value=14 Score=40.70 Aligned_cols=234 Identities=21% Similarity=0.202 Sum_probs=127.7
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHhccC--cCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHH----hHHHHHHHHH
Q 019366 75 KDTLATCQLELEAAKSEIQKWHSSFQN--ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAK----KKEAAFIVTF 148 (342)
Q Consensus 75 ~~~~~~~~~~l~~a~~e~~kW~~~f~~--e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eak----rREnvll~rL 148 (342)
-+.++++|++...+.-+..|-.+.... +.-+.-...-..++-..+ ..++.-|..+++|+.... -+=...+..+
T Consensus 68 ~~~l~~Lqns~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q-~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~ 146 (716)
T KOG4593|consen 68 EDELMQLQNSHKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQ-EALKGQEEKLQEQLERNRNQCQANLKKELELL 146 (716)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777776665442221 111111111122222333 556666777777765444 1112223334
Q ss_pred HhHHHHHHHHHHHHHHHHHhc-----CCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhH
Q 019366 149 AKREQEIAELKSAVRDLKAQL-----KPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGK 223 (342)
Q Consensus 149 A~KEQEiqel~s~l~dlk~~~-----~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GK 223 (342)
-.++-.++++.+.+.-+.... ..-.-..+--.++-.|+.+-.+++.-....+.++...++...+.- ....
T Consensus 147 ~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~-----e~~~ 221 (716)
T KOG4593|consen 147 REKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLE-----ERAD 221 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 455556666655554443221 111123355567778888888887777777766666665553321 0000
Q ss_pred HHHHHH-----HHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHH---HHH
Q 019366 224 ALMAKC-----KTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLM---LRE 295 (342)
Q Consensus 224 rLMAKC-----R~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~---LQq 295 (342)
-.|+.. =.+..|-+.+.+.+. ..|+.|+-....+..+.+++++. .+...-+.-|-+|+|++++.++. |+.
T Consensus 222 ~~qq~a~~~~ql~~~~ele~i~~~~~-dqlqel~~l~~a~~q~~ee~~~~-re~~~tv~~LqeE~e~Lqskl~~~~~l~~ 299 (716)
T KOG4593|consen 222 HEQQNAELEQQLSLSEELEAINKNMK-DQLQELEELERALSQLREELATL-RENRETVGLLQEELEGLQSKLGRLEKLQS 299 (716)
T ss_pred HHHHHhhHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 012345556666555 56777777777777777776543 45556667777888888877654 456
Q ss_pred HHHHhHHHHHHHHHHHhhhhh
Q 019366 296 KLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 296 eL~~~~~~l~~lk~eL~~~~~ 316 (342)
.+..+.-++..|+.+|+..+-
T Consensus 300 ~~~~LELeN~~l~tkL~rwE~ 320 (716)
T KOG4593|consen 300 TLLGLELENEDLLTKLQRWER 320 (716)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 666677777777777776655
No 72
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.41 E-value=9.3 Score=38.19 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhc
Q 019366 220 KMGKALMAKCKTLQEENDEIGRQNEE 245 (342)
Q Consensus 220 ~~GKrLMAKCR~LqeENEELGr~lse 245 (342)
.....|=-|||.|++||.-|-..++.
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688999999999999999886663
No 73
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.40 E-value=1.8 Score=40.52 Aligned_cols=89 Identities=13% Similarity=0.327 Sum_probs=52.6
Q ss_pred HHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHH
Q 019366 177 RRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLA 256 (342)
Q Consensus 177 R~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLA 256 (342)
+.+.-.|.+...+..|.+++.+.+.++..+..+
T Consensus 83 ~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~----------------------------------------------- 115 (206)
T PRK10884 83 KQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNT----------------------------------------------- 115 (206)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhH-----------------------------------------------
Confidence 445556777777777777777766666665433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 257 LQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 257 lqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
......+|...+......+.+|+++...+++++..+|.++..+..++..++.....
T Consensus 116 -~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 116 -WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333344444455555566666666666666777777777777766655443
No 74
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.38 E-value=18 Score=41.50 Aligned_cols=149 Identities=17% Similarity=0.235 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 019366 139 KKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTAN 218 (342)
Q Consensus 139 rREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPq 218 (342)
.+|+-.----++++-++.++...|..+++....++..+... -.+|.+|.-++++.++++...+..|..
T Consensus 773 ~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~------~~e~e~l~lE~e~l~~e~~~~k~~l~~------ 840 (1174)
T KOG0933|consen 773 TLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKR------ENEYERLQLEHEELEKEISSLKQQLEQ------ 840 (1174)
T ss_pred HHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34555555556666666666666666555433333322211 134556666666666655555555433
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 219 SKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 219 S~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
+...|+.|..|+.+|-. +|...+...-...+.+.+.+..+.+++.-+..+-...+-+.+......-++.
T Consensus 841 ------~~~~~~~l~~e~~~l~~-----kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~k 909 (1174)
T KOG0933|consen 841 ------LEKQISSLKSELGNLEA-----KVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERK 909 (1174)
T ss_pred ------HHHHHHHHHHHHHHHHH-----HHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHH
Confidence 45678888888777643 5566666666666666666667777776666666666776666666666667
Q ss_pred HhHHHHHHHHHH
Q 019366 299 ENDHELEKLKHE 310 (342)
Q Consensus 299 ~~~~~l~~lk~e 310 (342)
++..++.+++.+
T Consensus 910 kle~e~~~~~~e 921 (1174)
T KOG0933|consen 910 KLEHEVTKLESE 921 (1174)
T ss_pred HHHhHHHHhhhh
Confidence 777777666644
No 75
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.36 E-value=0.55 Score=42.54 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=58.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
++|..|+.+++..+..+..+...+++....++.+..|+.-+|-++.++.+++.+++.+...|=.
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999998887643
No 76
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.34 E-value=4.6 Score=46.14 Aligned_cols=182 Identities=18% Similarity=0.251 Sum_probs=96.0
Q ss_pred CCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHH---HHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHH--Hhhh
Q 019366 107 PGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEA---AFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR--RLLL 181 (342)
Q Consensus 107 a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREn---vll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR--~~Ll 181 (342)
.|.+++.+.=..++..|+.-.++|.+||.+..+|.+ -.-.++.-+|..|+-++..+..+|....---+.++ ...+
T Consensus 641 sGG~s~~~wdek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i 720 (1141)
T KOG0018|consen 641 SGGSSGAKWDEKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEI 720 (1141)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666778899999999999999988777643 12223333444444444444443321111111121 2223
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------cCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHH
Q 019366 182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS------FTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKL 255 (342)
Q Consensus 182 DPAVNlef~rLR~eLee~~~klk~aq~eL~A~k------FtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eL 255 (342)
| -+.-.++.+..+|+..+...+.++.+++.+- |.| .+|-+ + |. + ||.++ .+--+-+..+++.++
T Consensus 721 ~-~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~--~igv~-i---r~-Y-ee~~~-~~~~a~k~~ef~~q~ 790 (1141)
T KOG0018|consen 721 D-EFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCR--RIGVR-I---RE-Y-EEREL-QQEFAKKRLEFENQK 790 (1141)
T ss_pred H-hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcCee-e---eh-H-HHHHH-HHHHHHHHHHHHHHH
Confidence 3 3333334455577777777777777776653 332 23332 1 11 1 11111 212222334444444
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 256 ALQKSLN-----AELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 256 AlqK~~~-----eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
+....+. ......++-+++.+..++.+++++.......--.+.
T Consensus 791 ~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~ 838 (1141)
T KOG0018|consen 791 AKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIA 838 (1141)
T ss_pred HHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHh
Confidence 4444444 455667777777777777777777655444433333
No 77
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.32 E-value=20 Score=41.77 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=11.1
Q ss_pred hhhhchhhhHhhHHHHHHHHHHH
Q 019366 70 SLQNCKDTLATCQLELEAAKSEI 92 (342)
Q Consensus 70 ~l~~~~~~~~~~~~~l~~a~~e~ 92 (342)
-|..|+..|+.+..++..+..++
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l 765 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELAREL 765 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444443
No 78
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.17 E-value=23 Score=42.02 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=44.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhh-hcccchhhhHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhhHHH
Q 019366 216 TANSKMGKALMAKCKTLQEENDEIGRQN-EEGETHQLSVKLALQKSLNAELKSQ----------FEALYKHMDGLTDDVE 284 (342)
Q Consensus 216 tPqS~~GKrLMAKCR~LqeENEELGr~l-seGria~Le~eLAlqK~~~eELrk~----------~~eL~~~l~eLdeEvE 284 (342)
-|-+.....-...|+.+.+.--..++.- -.++.+.|+..+..|.....-+..- -.++..+..+++..+|
T Consensus 489 v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (1486)
T PRK04863 489 VSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLE 568 (1486)
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 3334344444444444444333333321 2234555555555555444333322 2344555555555565
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 285 RSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 285 ~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
.++..+..+-++-...+++++.|+..+++.
T Consensus 569 ~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l 598 (1486)
T PRK04863 569 SLSESVSEARERRMALRQQLEQLQARIQRL 598 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444444444444444444444433
No 79
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.06 E-value=11 Score=38.11 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 288 EMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 288 stl~~LQqeL~~~~~~l~~lk~eL 311 (342)
..+..++.+|...+.++...+..|
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 80
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.95 E-value=4.6 Score=35.59 Aligned_cols=102 Identities=27% Similarity=0.388 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhh--cccchhhhHHHHHHHHHHHHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNE--EGETHQLSVKLALQKSLNAELKS 267 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~ls--eGria~Le~eLAlqK~~~eELrk 267 (342)
..||.+.+....++..+. ++++.|.++|..+...+. ..|+..||.+|......+.+.+.
T Consensus 3 ~~lk~E~d~a~~r~e~~e-------------------~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELE-------------------AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHhHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666555555544 356666666666665443 23555555555555555555444
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 268 QFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 268 ~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
...+...... .+|.++.-|-.|.++|...+..+......|.+.
T Consensus 64 ~lee~~~~~~----~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 64 KLEESEKRKS----NAEQLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHhHHHHHH----hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333332221 233555555555555555555555555555443
No 81
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.92 E-value=14 Score=39.78 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=17.8
Q ss_pred HhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019366 178 RLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (342)
Q Consensus 178 ~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~ 211 (342)
.+|.||..|+ .+|...++....++..++.+..
T Consensus 387 ~lL~d~e~ni--~kL~~~v~~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 387 ELLPDAEENI--AKLQALVEASEQRLVELAQQWE 418 (594)
T ss_pred HHhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555 4555555555555555555544
No 82
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.82 E-value=8.1 Score=36.43 Aligned_cols=129 Identities=15% Similarity=0.242 Sum_probs=64.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHH---HHhhhhcccCCCc-
Q 019366 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKEL---EENIAAVSFTANS- 219 (342)
Q Consensus 144 ll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~a---q~eL~A~kFtPqS- 219 (342)
|++++..++.-.+.+.-....+++.-....- .......++..||..+.....-+..+ .++|.-.|-...+
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee------~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~l 79 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEE------GNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSL 79 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776666666666666544211000 00112233444444444433333222 3333333322222
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH
Q 019366 220 -KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMV 290 (342)
Q Consensus 220 -~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl 290 (342)
--++.|++.||.|..|| +.|.++++.....+..+....+.+.+-..+|......+|..|
T Consensus 80 EE~~~~L~aq~rqlEkE~------------q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 80 EEENRSLLAQARQLEKEQ------------QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 23455777777776666 344555555555555555555555555666655666666555
No 83
>PRK11281 hypothetical protein; Provisional
Probab=92.75 E-value=23 Score=40.90 Aligned_cols=167 Identities=12% Similarity=0.179 Sum_probs=95.7
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCch-HHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019366 133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL-MQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (342)
Q Consensus 133 Ql~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss-~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~ 211 (342)
+..+.+.|=..|-.+++...+++.+....+..++....++. .......+ +..--.+..+...+.+.+..+..++..|.
T Consensus 74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl-~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556577888999999999999999988876433332 11112222 22333334555666666666666666666
Q ss_pred hcccCCCchhhHHHHHHHH-HHHHHHHHHhh------hhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-------h
Q 019366 212 AVSFTANSKMGKALMAKCK-TLQEENDEIGR------QNEEGETHQLSVKLALQKSLNAELKSQFEALYKHM-------D 277 (342)
Q Consensus 212 A~kFtPqS~~GKrLMAKCR-~LqeENEELGr------~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l-------~ 277 (342)
+..=-|+..-. .|+..+ .+++=+..|.. .+++-+...|.+++++.+.+++..+.....-.... +
T Consensus 153 ~~qT~PERAQ~--~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d 230 (1113)
T PRK11281 153 SLQTQPERAQA--ALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRD 230 (1113)
T ss_pred hhhcchHHHHH--HHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 66655655333 333322 33333334433 23334567889999999999888887765433322 2
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHhHH
Q 019366 278 GLTDDVERSNEMVLMLREKLEENDH 302 (342)
Q Consensus 278 eLdeEvE~lqstl~~LQqeL~~~~~ 302 (342)
.+...++.++..|..||+.++.++.
T Consensus 231 ~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 231 YLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344445555555555555555433
No 84
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.74 E-value=3 Score=36.22 Aligned_cols=98 Identities=21% Similarity=0.349 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 019366 183 PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN 262 (342)
Q Consensus 183 PAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~ 262 (342)
|.+. ++.+|.+.|...+.++..++.+++++.=+-++ |-.-.=.|..+|+++ .....++..++...
T Consensus 13 ~~~~-~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~-----l~~Eiv~l~~~~e~~---------~~~~~~~~~L~~el 77 (120)
T PF12325_consen 13 PSVQ-LVERLQSQLRRLEGELASLQEELARLEAERDE-----LREEIVKLMEENEEL---------RALKKEVEELEQEL 77 (120)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 4443 46899999999999999999999887633333 444555566677766 33445666777888
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHH
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNEMVLMLRE 295 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQq 295 (342)
.+|...|.-+..++-+-.++||.++.-|.-+..
T Consensus 78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999996666554443
No 85
>PRK11281 hypothetical protein; Provisional
Probab=92.67 E-value=23 Score=40.82 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=13.1
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHH
Q 019366 75 KDTLATCQLELEAAKSEIQKWHS 97 (342)
Q Consensus 75 ~~~~~~~~~~l~~a~~e~~kW~~ 97 (342)
+.+++....+++.|+.++.+-++
T Consensus 86 ~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 86 KQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhc
Confidence 34455555566666666665554
No 86
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.55 E-value=16 Score=38.55 Aligned_cols=216 Identities=19% Similarity=0.300 Sum_probs=120.9
Q ss_pred HhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHH
Q 019366 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (342)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvl 144 (342)
-.|..-+..+-.-+..|+.++-..=.++..=-..|..+.|.-..- -+...|..++..-..+...|..
T Consensus 204 ~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~-----~i~~~i~~i~~~l~~~~~~L~~-------- 270 (560)
T PF06160_consen 204 DELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHL-----DIEEEIEQIEEQLEEALALLKN-------- 270 (560)
T ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHc--------
Confidence 344455556666677777777777777754444455555542321 2223343333333333333321
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cCCC---c
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS--FTAN---S 219 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~k--FtPq---S 219 (342)
..+..-+..+.++...|..|..... +-.---|.|..-+..+...|.......+.+..++..++ |+-. .
T Consensus 271 -l~l~~~~~~~~~i~~~Id~lYd~le------~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~ 343 (560)
T PF06160_consen 271 -LELDEVEEENEEIEERIDQLYDILE------KEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNEL 343 (560)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 2344455566666666666655421 33444567777778888888888888888888886553 3222 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 220 KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 220 ~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
..-+.|..++..|....+.+-..+..+. ..-..+...++++.+.+.+.+++...+...|..|...-..
T Consensus 344 ~~~~~l~~~l~~l~~~~~~~~~~i~~~~------------~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~ 411 (560)
T PF06160_consen 344 EIVRELEKQLKELEKRYEDLEERIEEQQ------------VPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKE 411 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666655555555555543 3444455555556666666666666666666666666555
Q ss_pred hHHHHHHHHHHHh
Q 019366 300 NDHELEKLKHELR 312 (342)
Q Consensus 300 ~~~~l~~lk~eL~ 312 (342)
++..+..++..|.
T Consensus 412 Ar~~l~~~~~~l~ 424 (560)
T PF06160_consen 412 AREKLQKLKQKLR 424 (560)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555555443
No 87
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=92.36 E-value=13 Score=38.72 Aligned_cols=135 Identities=16% Similarity=0.260 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-------------
Q 019366 153 QEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS------------- 219 (342)
Q Consensus 153 QEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS------------- 219 (342)
+||+.++..|.-+|+.|... +..+...+.....++...+. .++.++++|
T Consensus 155 ~el~~lrrdLavlRQ~~~~~----------------~~~~~~sm~~i~~k~~~~k~--~~~~~~~~s~R~y~e~~k~kL~ 216 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSF----------------FTEIKESIKDILEKIDKFKS--SSLSASGSSNRAYVESSKKKLS 216 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH--hhhccCCCcchHHHHHhHHHHH
Confidence 78888888888888775433 34445555555555555554 244555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh------------hhhhHHHh--
Q 019366 220 KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMD------------GLTDDVER-- 285 (342)
Q Consensus 220 ~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~------------eLdeEvE~-- 285 (342)
....+|++|..-||.=.|.|.+-+..-.|.++..+|..-.+-+...++.++.|.+||. +|+.=.|+
T Consensus 217 ~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqq 296 (426)
T smart00806 217 EDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQ 296 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHH
Confidence 2234577788889999999999999999999999999999999999999999999884 55555544
Q ss_pred ---hHHH-HHHHHHHHHHhHHHHH
Q 019366 286 ---SNEM-VLMLREKLEENDHELE 305 (342)
Q Consensus 286 ---lqst-l~~LQqeL~~~~~~l~ 305 (342)
||+- +.-|+..|+++.+...
T Consensus 297 fL~lQedL~~DL~dDL~ka~eTf~ 320 (426)
T smart00806 297 FLTLQEDLIADLKEDLEKAEETFD 320 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 3445555555554443
No 88
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.29 E-value=12 Score=36.58 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 019366 82 QLELEAAKSEIQKWHSSFQ 100 (342)
Q Consensus 82 ~~~l~~a~~e~~kW~~~f~ 100 (342)
...|+.|+++++.|...+.
T Consensus 62 ~~~l~~ak~eLqe~eek~e 80 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEE 80 (258)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3457777777777776443
No 89
>PRK10869 recombination and repair protein; Provisional
Probab=92.16 E-value=18 Score=38.21 Aligned_cols=109 Identities=12% Similarity=0.128 Sum_probs=64.1
Q ss_pred hhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhh-hcccchhhhHHHHHH
Q 019366 180 LLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN-EEGETHQLSVKLALQ 258 (342)
Q Consensus 180 LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~l-seGria~Le~eLAlq 258 (342)
-.||.+.....+|.+-....+.-...+..-+..+.|+|+. ...+++-...|-+.- -.| ..++.-++
T Consensus 258 ~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~---------l~~ie~Rl~~l~~L~rKyg--~~~~~~~~-- 324 (553)
T PRK10869 258 GMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNR---------LAELEQRLSKQISLARKHH--VSPEELPQ-- 324 (553)
T ss_pred hhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH---------HHHHHHHHHHHHHHHHHhC--CCHHHHHH--
Confidence 3588888888888777777777777777777888999975 222222222222211 112 12232233
Q ss_pred HHHHHHHHHHH---HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHH
Q 019366 259 KSLNAELKSQF---EALYKHMDGLTDDVERSNEMVLMLREKLEENDHE 303 (342)
Q Consensus 259 K~~~eELrk~~---~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~ 303 (342)
+-++++.++ .+....+.+|..+++.+...+..+-++|...+..
T Consensus 325 --~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 325 --HHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred --HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 3344557777777777777777777777766655
No 90
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.11 E-value=21 Score=39.69 Aligned_cols=162 Identities=20% Similarity=0.331 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 127 EEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKEL 206 (342)
Q Consensus 127 E~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~a 206 (342)
...+++++....-=-.-+-+.|+.-...+..++.+|.+.- .-+..|+.+|...++--..+
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E--------------------~~L~eLq~eL~~~keS~s~~ 650 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESE--------------------QKLEELQSELESAKESNSLA 650 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333334455556666666666666665531 22345555666555555555
Q ss_pred HHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 019366 207 EENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERS 286 (342)
Q Consensus 207 q~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~l 286 (342)
..+|.+.+..-.+ |-.++..++.|+.+|-. +|..|+.+|..-|....++-..+.+|+.-+.-...+..-.
T Consensus 651 E~ql~~~~e~~e~-----le~~~~~~e~E~~~l~~-----Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~ 720 (769)
T PF05911_consen 651 ETQLKAMKESYES-----LETRLKDLEAEAEELQS-----KISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQ 720 (769)
T ss_pred HHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchh
Confidence 5555555543333 44466667777777655 6677777877777777777777777766666554443221
Q ss_pred ----------HH-HHHHHHHHHHHhHHHHHHHHHHHhhhhhcc
Q 019366 287 ----------NE-MVLMLREKLEENDHELEKLKHELRQKSVLE 318 (342)
Q Consensus 287 ----------qs-tl~~LQqeL~~~~~~l~~lk~eL~~~~~~~ 318 (342)
|+ .|..-=..|+..+..|.-|=..|....|..
T Consensus 721 ~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa~~~ 763 (769)
T PF05911_consen 721 QLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLATPE 763 (769)
T ss_pred hccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 11 233344456677777777766666665543
No 91
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.11 E-value=0.043 Score=60.11 Aligned_cols=219 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHH-------HHHH
Q 019366 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKE-------QLEK 136 (342)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~Lke-------Ql~e 136 (342)
+-.||+.|..-......++..|..++.+|..|+.-|..+..-- +..|.++..+|.. ++..
T Consensus 273 ~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~-------------~EelEeaKKkL~~~L~el~e~le~ 339 (859)
T PF01576_consen 273 LEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQR-------------TEELEEAKKKLERKLQELQEQLEE 339 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhh-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888877777888888899999999999999776643321 1112222233333 3333
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHH---HHHHHHHHHHHHHHHHHhhhhc
Q 019366 137 AKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRR---LKNLVEEKDKKVKELEENIAAV 213 (342)
Q Consensus 137 akrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~r---LR~eLee~~~klk~aq~eL~A~ 213 (342)
+..+-.-+-..-..+..|+.++...|...++.... .-=++--+|-.++..=.+ +..++.....+...+..++-..
T Consensus 340 ~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~--LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~L 417 (859)
T PF01576_consen 340 ANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAE--LEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKL 417 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333333344444555555555555443322110 000222333333332211 2233333333333333333222
Q ss_pred ccCCCchhhH--HHHHHHHHHHHHHHHHhhhhhc-cc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH
Q 019366 214 SFTANSKMGK--ALMAKCKTLQEENDEIGRQNEE-GE-THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEM 289 (342)
Q Consensus 214 kFtPqS~~GK--rLMAKCR~LqeENEELGr~lse-Gr-ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqst 289 (342)
+-..+-.... .|--.-+.|+.|+.+|..+++. |+ ||.|+...-.+-....+|+..++++..-+...+..+-|++-.
T Consensus 418 k~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~e 497 (859)
T PF01576_consen 418 KNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVE 497 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211111 1222346777777777666664 33 677777777777777788888888888777777777777777
Q ss_pred HHHHHHHH
Q 019366 290 VLMLREKL 297 (342)
Q Consensus 290 l~~LQqeL 297 (342)
|-.+.+++
T Consensus 498 l~~~r~e~ 505 (859)
T PF01576_consen 498 LQQLRQEI 505 (859)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 76666554
No 92
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.03 E-value=15 Score=39.69 Aligned_cols=87 Identities=21% Similarity=0.299 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 019366 191 RLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (342)
Q Consensus 191 rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~ 270 (342)
.|+..-....++++.++.++.++ -.-|.+|+.+|.+|.+++.--+|. -+.++.|...-.
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~k------------EeE~e~lq~~~d~Lk~~Ie~Q~iS---------~~dve~mn~Er~ 342 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEK------------EEEIEKLQKENDELKKQIELQGIS---------GEDVERMNLERN 342 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHH
Confidence 44444455555555555555443 236888899999998887643332 234555555566
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 271 ALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 271 eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
+|.+-|..+.-+.++++..+--+.-+++
T Consensus 343 ~l~r~l~~i~~~~d~l~k~vw~~~l~~~ 370 (581)
T KOG0995|consen 343 KLKRELNKIQSELDRLSKEVWELKLEIE 370 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6666666666666666555544444333
No 93
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=23 Score=39.10 Aligned_cols=113 Identities=20% Similarity=0.246 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 019366 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (342)
Q Consensus 186 Nlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eEL 265 (342)
+..+..|+........++..+.+.+.+.+=.-+ .|.....++++-.+.+++ +++.+...+..++.+.+..
T Consensus 509 ~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~-----~l~~el~~~~~~le~~kk-----~~~e~~~~~~~Lq~~~ek~ 578 (698)
T KOG0978|consen 509 EEQILTLKASVDKLELKIGKLEEQERGLTSNES-----KLIKELTTLTQSLEMLKK-----KAQEAKQSLEDLQIELEKS 578 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh-----hhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 445566666666677777777777777653322 377777788877777777 5667777777777777777
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 266 KSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 266 rk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
.+.++++..-+.+...+++-+--....||+++...+..+++++
T Consensus 579 ~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 579 EAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777777777777766666666666666666666554
No 94
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.83 E-value=24 Score=39.03 Aligned_cols=194 Identities=21% Similarity=0.256 Sum_probs=97.5
Q ss_pred CCCCCCCChhhhHHHHhhhHhhH-HHHHHHHHHHHhHHHH-HHHHHHhH--------------HHHHHHHHHHHHHHHHh
Q 019366 105 IPPGTSPEPRLVINYLQTLKSSE-EMLKEQLEKAKKKEAA-FIVTFAKR--------------EQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 105 i~a~~~~~p~lv~~~l~~lk~sE-~~LkeQl~eakrREnv-ll~rLA~K--------------EQEiqel~s~l~dlk~~ 168 (342)
-+.+..|.|.+|.+-+.-|.-+| .+|++||.... ||++ |+..|=.. ...|..|...|..++..
T Consensus 244 ~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve-~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l 322 (717)
T PF09730_consen 244 KSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVE-REKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKL 322 (717)
T ss_pred CCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33555677887877777777777 47888997764 7755 44444333 33344444445444442
Q ss_pred cCCch-------HHHHHhhhChhhHHHHH-------HHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHH
Q 019366 169 LKPPL-------MQARRLLLDPAIHEEFR-------RLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQE 234 (342)
Q Consensus 169 ~~pss-------~qlR~~LlDPAVNlef~-------rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~Lqe 234 (342)
+.+-. ..-+...-| +..|. -|......+-.++..++.+|.+ |=+++..++.
T Consensus 323 ~~~ke~~~~~d~~~~~~s~~d---~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~------------Lk~k~~~~~~ 387 (717)
T PF09730_consen 323 QEDKEQQSAEDSEKERDSHED---GDYYEVDINGLEILECKYKVAVSEVIQLKAELKA------------LKSKYNELEE 387 (717)
T ss_pred ccchhhhhhhhcccccccccc---cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
Confidence 21110 001111111 01111 1222222333333333333322 2233333333
Q ss_pred HHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 235 ENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 235 ENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
+..--+....++++.|..++........+=+....+|+.=|..+..-+..-+..|...|.+|-..-.+|+.|-+-++.-
T Consensus 388 -~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~c 466 (717)
T PF09730_consen 388 -RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMC 466 (717)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333334456666666666666554445566666666666666666666666666766666666666666666554
Q ss_pred h
Q 019366 315 S 315 (342)
Q Consensus 315 ~ 315 (342)
+
T Consensus 467 N 467 (717)
T PF09730_consen 467 N 467 (717)
T ss_pred c
Confidence 3
No 95
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=91.82 E-value=14 Score=36.16 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=80.3
Q ss_pred CCCChhhhHHHHhhhHh-hHHHHHHHHHHHH--hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChh-
Q 019366 109 TSPEPRLVINYLQTLKS-SEEMLKEQLEKAK--KKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPA- 184 (342)
Q Consensus 109 ~~~~p~lv~~~l~~lk~-sE~~LkeQl~eak--rREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPA- 184 (342)
.+.+|...-.-+..+-. ++.-+.. +.... ..-..+-.++...++++.+....+.++|..+. ++||.
T Consensus 138 ~~~dP~~A~~ian~l~~~~~~~i~~-~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~---------~~d~~~ 207 (362)
T TIGR01010 138 TAFDAEEAQKINQRLLKEGERLINR-LNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNK---------VFDPKA 207 (362)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CcChHH
Confidence 45677766555555533 4443332 32222 22356778888888888888888888887753 23442
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 019366 185 ----IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE 245 (342)
Q Consensus 185 ----VNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lse 245 (342)
....+..|+.++.+.+.++.+++. .|+|+++.=+.|-++...|+....+.-+.+..
T Consensus 208 ~~~~~~~~i~~L~~~l~~~~~~l~~l~~-----~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~ 267 (362)
T TIGR01010 208 QSSAQLSLISTLEGELIRVQAQLAQLRS-----ITPEQNPQVPSLQARIKSLRKQIDEQRNQLSG 267 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCCCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344577788888888777776554 68888998888888888888877665444443
No 96
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.57 E-value=16 Score=36.45 Aligned_cols=189 Identities=14% Similarity=0.240 Sum_probs=104.9
Q ss_pred hhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC---cCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHH
Q 019366 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN---ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEA 142 (342)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~---e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREn 142 (342)
+||+---..-..+..++.+...-++.++.-..-+.. ...-+++.+.++..+...++.|.-... --.-.-..|.
T Consensus 59 elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~----T~~L~~e~E~ 134 (294)
T COG1340 59 ELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQ----TSVLTPEEER 134 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHH----hcCCChHHHH
Confidence 344444444445555666665555555443333322 111112455666666666654432211 0111233467
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhh
Q 019366 143 AFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (342)
Q Consensus 143 vll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~G 222 (342)
-++-+|+.+++++...+.++. +|..+..|..++....++.....+
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e---------------------~~~~~~el~aei~~lk~~~~e~~e-------------- 179 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALE---------------------ENEKLKELKAEIDELKKKAREIHE-------------- 179 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 777777777777666665552 245556666666666664444433
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHH
Q 019366 223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDH 302 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~ 302 (342)
+..+|...++ .---++....+-.+++|+.-.++|.-+.+.-..++.+..-+..+|.+|+..+.
T Consensus 180 ------------ki~~la~eaq-----e~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 180 ------------KIQELANEAQ-----EYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred ------------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3334443332 22234455566677777777777777777777777777777777777777777
Q ss_pred HHHHHHHH
Q 019366 303 ELEKLKHE 310 (342)
Q Consensus 303 ~l~~lk~e 310 (342)
.+..|...
T Consensus 243 ~ik~l~~~ 250 (294)
T COG1340 243 KIKALRAK 250 (294)
T ss_pred HHHHHHHH
Confidence 77766543
No 97
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=91.39 E-value=16 Score=36.06 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=58.4
Q ss_pred HHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHH
Q 019366 68 RESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVT 147 (342)
Q Consensus 68 r~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~r 147 (342)
.......+..|...+..|+.++.++++.-..+..+ ..-+...=......|..+..+..+...+-..+-..
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~----------~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~ 83 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKE----------QEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEE 83 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777778888888888887776633211 11111111112334445555555555554555555
Q ss_pred HHhHHHHHHHHH--------HHHHHHHHhcCCc-----hHHHHHhhhCh
Q 019366 148 FAKREQEIAELK--------SAVRDLKAQLKPP-----LMQARRLLLDP 183 (342)
Q Consensus 148 LA~KEQEiqel~--------s~l~dlk~~~~ps-----s~qlR~~LlDP 183 (342)
|+.-+-.+.+-. ..|.++|+...|| ++.+=++|++|
T Consensus 84 L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~ 132 (344)
T PF12777_consen 84 LAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGP 132 (344)
T ss_dssp HHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhc
Confidence 555555555443 4677889999998 35566777765
No 98
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.35 E-value=3.5 Score=35.62 Aligned_cols=85 Identities=19% Similarity=0.352 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhhhh--cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHH----HHHHHHHHhH
Q 019366 228 KCKTLQEENDEIGRQNE--EGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVL----MLREKLEEND 301 (342)
Q Consensus 228 KCR~LqeENEELGr~ls--eGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~----~LQqeL~~~~ 301 (342)
+.+.|..+++-|...+. ..+++.++.+++........+.+.+..+..-+...-+|+.++...+- +..-++++++
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke 139 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKE 139 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333221 23556666677777777777778888888888888888888877654 4456788888
Q ss_pred HHHHHHHHHHh
Q 019366 302 HELEKLKHELR 312 (342)
Q Consensus 302 ~~l~~lk~eL~ 312 (342)
.++.+||.-|.
T Consensus 140 ~E~~kLk~rL~ 150 (151)
T PF11559_consen 140 REIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHhc
Confidence 88888888765
No 99
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.81 E-value=4.2 Score=43.72 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 285 RSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 285 ~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
.++..+..|+.+|..+...+.||+..-..+..
T Consensus 603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~ 634 (722)
T PF05557_consen 603 SQEKEIAELKAELASAEKRNQRLKEVFKAKSQ 634 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677888888899999999887776654
No 100
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.70 E-value=5.5 Score=35.26 Aligned_cols=16 Identities=13% Similarity=0.474 Sum_probs=6.4
Q ss_pred HhHHHHHHHHHHHHHH
Q 019366 149 AKREQEIAELKSAVRD 164 (342)
Q Consensus 149 A~KEQEiqel~s~l~d 164 (342)
+..++|+.++...+.+
T Consensus 91 ~~l~~el~~l~~~~~~ 106 (191)
T PF04156_consen 91 QQLQEELDQLQERIQE 106 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 101
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.14 E-value=31 Score=37.37 Aligned_cols=172 Identities=20% Similarity=0.281 Sum_probs=85.6
Q ss_pred HhhHHhhhhchhhhHhhHHHHHHHHHHH-------HHHHHhccCcCCCCCCCCCChhh----hHHHHhhhHhhHHHHHHH
Q 019366 65 LSLRESLQNCKDTLATCQLELEAAKSEI-------QKWHSSFQNELFIPPGTSPEPRL----VINYLQTLKSSEEMLKEQ 133 (342)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~e~-------~kW~~~f~~e~~i~a~~~~~p~l----v~~~l~~lk~sE~~LkeQ 133 (342)
..+..-.+.....+.++..+.+.....+ .+-++.+...+ +...+..|.- +...+..|+.--+.|..+
T Consensus 25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~--~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP--PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555444333 33344443322 1212222222 344566777777888888
Q ss_pred HHHHHhHHHHHHHHH-HhHHHHHHHHHHHHHHHHHhcCCch------HHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 134 LEKAKKKEAAFIVTF-AKREQEIAELKSAVRDLKAQLKPPL------MQARRLLLDPAIHEEFRRLKNLVEEKDKKVKEL 206 (342)
Q Consensus 134 l~eakrREnvll~rL-A~KEQEiqel~s~l~dlk~~~~pss------~qlR~~LlDPAVNlef~rLR~eLee~~~klk~a 206 (342)
+. +.-++|--+.++ ..++..|.++...+..|.... +.. ++-..+.+-=||.-= ..||.-|.+.....-.+
T Consensus 103 lq-aqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~-~D~~kLLe~lqsdk~t~SRAlsQN-~eLK~QL~Elq~~Fv~l 179 (617)
T PF15070_consen 103 LQ-AQVENNEQLSRLNQEQEERLAELEEELERLQEQQ-EDRQKLLEQLQSDKATASRALSQN-RELKEQLAELQDAFVKL 179 (617)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccchHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 85 455566666666 466666777776666665432 111 111111111111111 24555555555544444
Q ss_pred HHhhhhccc--CCCchhhHHHHHHHHHHHHHHHHHhh
Q 019366 207 EENIAAVSF--TANSKMGKALMAKCKTLQEENDEIGR 241 (342)
Q Consensus 207 q~eL~A~kF--tPqS~~GKrLMAKCR~LqeENEELGr 241 (342)
.++=.-++= ...-.++|-|-.||-.|+++..++..
T Consensus 180 tne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 180 TNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKE 216 (617)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222 22336788888888888877666654
No 102
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.08 E-value=28 Score=36.71 Aligned_cols=225 Identities=20% Similarity=0.289 Sum_probs=114.7
Q ss_pred hhhHHHhhHHhhhhch-------hhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHH
Q 019366 60 ATGMILSLRESLQNCK-------DTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKE 132 (342)
Q Consensus 60 ~t~~il~lr~~l~~~~-------~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~Lke 132 (342)
|..++..|++.+.... .-+..|+.++-..=.+|..=...|....|. -+.--+...|+.++..=.....
T Consensus 196 A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~-----~~~~~i~~~i~~l~~~i~~~~~ 270 (569)
T PRK04778 196 AREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYH-----LDHLDIEKEIQDLKEQIDENLA 270 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC-----CCCCChHHHHHHHHHHHHHHHH
Confidence 4556666666655544 445556666644444553333334444443 1222234444444333222222
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019366 133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (342)
Q Consensus 133 Ql~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A 212 (342)
.+ =-..|-..+..+..+...|..|..... +-..--+-|..-..++...|...+..+..+..++.-
T Consensus 271 ~l---------~~l~l~~~~~~~~~i~~~Id~Lyd~le------kE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~ 335 (569)
T PRK04778 271 LL---------EELDLDEAEEKNEEIQERIDQLYDILE------REVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR 335 (569)
T ss_pred HH---------HhcChHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222344444455555555555544321 122223445556667777777888888888888866
Q ss_pred cccCCCc-hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHH
Q 019366 213 VSFTANS-KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVL 291 (342)
Q Consensus 213 ~kFtPqS-~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~ 291 (342)
++ +| ..-..-+...+.++.+.++|.+.. ..+...++.......+++..++++.+.+.++..+.+.++..|.
T Consensus 336 l~---~sY~l~~~e~~~~~~lekeL~~Le~~~-----~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~ 407 (569)
T PRK04778 336 VK---QSYTLNESELESVRQLEKQLESLEKQY-----DEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ 407 (569)
T ss_pred HH---HccccCchhHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 22 000112334555555555555532 2334444444444556666666666666666666666666666
Q ss_pred HHHHHHHHhHHHHHHHHHHHh
Q 019366 292 MLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 292 ~LQqeL~~~~~~l~~lk~eL~ 312 (342)
.|...-..++..+..++..|.
T Consensus 408 ~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 408 GLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555555544
No 103
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.07 E-value=16 Score=33.89 Aligned_cols=100 Identities=24% Similarity=0.359 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019366 129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE 208 (342)
Q Consensus 129 ~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~ 208 (342)
+||+++.+.+++|...-..++...+|...+.--|..+..- ...|+.-+- .|.+-+..|..++.+++.++.
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e----~~eL~k~L~------~y~kdK~~L~~~k~rl~~~ek 100 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEE----VEELRKQLK------NYEKDKQSLQNLKARLKELEK 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555555555555555544444333222 122222221 245666677777777777777
Q ss_pred hhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhh
Q 019366 209 NIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN 243 (342)
Q Consensus 209 eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~l 243 (342)
+|...+.--+. |-.+|..|+.|-.+|-+..
T Consensus 101 ~l~~Lk~e~ev-----L~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 101 ELKDLKWEHEV-----LEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 77766654444 7778888888887776533
No 104
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=89.92 E-value=23 Score=35.47 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 019366 143 AFIVTFAKREQEIAELKSAVR 163 (342)
Q Consensus 143 vll~rLA~KEQEiqel~s~l~ 163 (342)
..+.++|..|+-|..|.+.|-
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG 226 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALG 226 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhC
Confidence 468899999999999998883
No 105
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.80 E-value=11 Score=32.86 Aligned_cols=105 Identities=22% Similarity=0.324 Sum_probs=76.1
Q ss_pred cccCCCchhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHH
Q 019366 53 EETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKE 132 (342)
Q Consensus 53 ~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~Lke 132 (342)
...+.|..+++|=.|-..|..+.+.++++|.++.....+=+.-...+-. --.-.+.+.....-=..|+.
T Consensus 7 s~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~-----------l~~~~e~~~~~~~~~~~L~~ 75 (120)
T PF12325_consen 7 STSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVK-----------LMEENEELRALKKEVEELEQ 75 (120)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888887777655544433331111 00011334444555567888
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 133 Ql~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
++.+...|-..++--|-.|.-++.+|+.-|.|+|.+
T Consensus 76 el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 76 ELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987
No 106
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=89.75 E-value=11 Score=35.75 Aligned_cols=142 Identities=22% Similarity=0.294 Sum_probs=96.5
Q ss_pred HHhhHHhhhhchhhhHh-------hHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHH
Q 019366 64 ILSLRESLQNCKDTLAT-------CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEK 136 (342)
Q Consensus 64 il~lr~~l~~~~~~~~~-------~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~e 136 (342)
|-.....|...+.++|. ++.++..+.....+|.+.- ...+.+|...--+-+....+.|...-..++.++..
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A--~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~ 110 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA--ELALQAGNEDLAREALEEKQSLEDLAKALEAELQQ 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666664 5667888999999999832 44677777666666666666666666666777766
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCch----HHHHHhhhCh-hhHHHHHHHHHHHHHHHHHHHHHH
Q 019366 137 AKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL----MQARRLLLDP-AIHEEFRRLKNLVEEKDKKVKELE 207 (342)
Q Consensus 137 akrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss----~qlR~~LlDP-AVNlef~rLR~eLee~~~klk~aq 207 (342)
+.--..-+-..+..++..|.++++....+++-..... +.-.....+| .--..|.||+..++..+.+..-..
T Consensus 111 ~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~ 186 (225)
T COG1842 111 AEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAA 186 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 6665566666777888888888888877766654432 2233445565 455678999999988887665443
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.65 E-value=5.1 Score=39.41 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=57.8
Q ss_pred hc-hhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhH
Q 019366 73 NC-KDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR 151 (342)
Q Consensus 73 ~~-~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~K 151 (342)
+| +.-+..++.+++.+..|++.|..-+..-... ...+.+..-+...+..|+..|..+.++|.+..+-..-+...+..+
T Consensus 5 eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~-~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 5 ECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEE-SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp --------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 4556788999999999999999955442200 112334456777888888888888888888888777777777777
Q ss_pred HHHHHHHHHHHH-HHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 152 EQEIAELKSAVR-DLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 152 EQEiqel~s~l~-dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL 210 (342)
+.|..++...-. .|+.. .........+..+.......+..+++.|
T Consensus 84 e~e~~~l~~eE~~~~~~~--------------n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 84 EEELEELDEEEEEYWREY--------------NELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777765332 22222 2233444566677777777777777776
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.47 E-value=21 Score=34.50 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
.++..+|++...+.+.++..|.+++
T Consensus 62 ~~~e~ei~~~r~r~~~~e~kl~~v~ 86 (239)
T COG1579 62 SQLESEIQEIRERIKRAEEKLSAVK 86 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556777777888888888886666
No 109
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=89.46 E-value=3.5 Score=34.04 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHhhHHHHHHHHHHHHHhHHHH
Q 019366 228 KCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTD---DVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 228 KCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLde---EvE~lqstl~~LQqeL~~~~~~l 304 (342)
..++|+.-|...+ .|...+...++-....++.|...+.+|..++..+|. .|..|-.++..|-+=..+....+
T Consensus 22 d~~LLe~mN~~~~-----~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 22 DYNLLENMNKATS-----LKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666544 488889999999999999999999999999888887 88888888888776666555544
No 110
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.27 E-value=9 Score=43.78 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=18.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMV 290 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl 290 (342)
|.+|+-++...++.+..+...|-.....-..|.++.+.+++.|
T Consensus 450 ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444433333
No 111
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.15 E-value=3.9 Score=44.33 Aligned_cols=59 Identities=19% Similarity=0.394 Sum_probs=46.0
Q ss_pred ccccCCCchhhH-HHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhH
Q 019366 52 VEETAPGVATGM-ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVI 117 (342)
Q Consensus 52 ~~~~~~~~~t~~-il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~ 117 (342)
.+---||.+||. +|+ .++.+-.+.+.-..+.+++-.|-+..--+..|..--+|-|.+|.
T Consensus 246 IVGIDPGiTtgiAvld-------ldGevl~~~S~r~~~~~eVve~I~~lG~PvvVAtDVtp~P~~V~ 305 (652)
T COG2433 246 IVGIDPGITTGIAVLD-------LDGEVLDLESRRGIDRSEVVEFISELGKPVVVATDVTPAPETVK 305 (652)
T ss_pred EEEeCCCceeeEEEEe-------cCCcEEeeeccccCCHHHHHHHHHHcCCceEEEccCCCChHHHH
Confidence 445569999997 344 45666666677788999999999988888888888888897773
No 112
>PRK04406 hypothetical protein; Provisional
Probab=89.12 E-value=2.8 Score=33.57 Aligned_cols=53 Identities=8% Similarity=0.139 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
+.|..++.+|+--+.-.+.-+|.||..|..+|++|.....++..|...|....
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555566666666666666777777788888888887777777776665443
No 113
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.11 E-value=7 Score=38.48 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 019366 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVSF-TANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN 262 (342)
Q Consensus 184 AVNlef~rLR~eLee~~~klk~aq~eL~A~kF-tPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~ 262 (342)
....++..|...++...++.+.-..=|...+= .+.+..-..+....+.|.+|.+++-.. +..|+.+-+......
T Consensus 6 C~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~e-----L~~LE~e~~~l~~el 80 (314)
T PF04111_consen 6 CTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQE-----LEELEKEREELDQEL 80 (314)
T ss_dssp ------------------------------------HH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 34556677777777777777766666655551 122233345666666666666555552 233444444444444
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
..++.+..++.+--...-.+.-.++-.+...++++.....++......|...+
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333333333444444444555555555554454444443
No 114
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.06 E-value=34 Score=36.39 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh----cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHH
Q 019366 223 KALMAKCKTLQEENDEIGRQNE----EGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLM 292 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~ls----eGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~ 292 (342)
..|..+...++.|..+|.+.+. ...+..|..++....+....++..+..+..-+..+..+++.+...+..
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777664 245666666666666666666666666666666666665555555433
No 115
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.05 E-value=24 Score=34.55 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=18.8
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 272 LYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 272 L~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
+...+..+.-+.-.|+..+..-.+.+.+...+|..|++++++..
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444433
No 116
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.83 E-value=36 Score=36.27 Aligned_cols=83 Identities=14% Similarity=0.208 Sum_probs=42.4
Q ss_pred hChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHH
Q 019366 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKS 260 (342)
Q Consensus 181 lDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~ 260 (342)
++|.....+..++.++...+.++..+...|+..- .-..-+.|-.+...+..+..++-. .+..+..++...++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~---~~e~i~~l~e~l~~l~~~l~~~~~-----~~~~~~~~~~~~~~ 456 (650)
T TIGR03185 385 VKRELQDAKSQLLKELRELEEELAEVDKKISTIP---SEEQIAQLLEELGEAQNELFRSEA-----EIEELLRQLETLKE 456 (650)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 3444455667777777788888888877776643 212333444444444444333332 22333444444444
Q ss_pred HHHHHHHHHHH
Q 019366 261 LNAELKSQFEA 271 (342)
Q Consensus 261 ~~eELrk~~~e 271 (342)
.++.+++.+..
T Consensus 457 ~i~~~~~~~~~ 467 (650)
T TIGR03185 457 AIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 117
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.30 E-value=0.32 Score=51.96 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 224 rLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
.....++.|..|..+|-- ...|+.+||..+...|+..++ ...+-.-|..|.++...+..++..|.++++.
T Consensus 288 ~~A~~a~~LrDElD~lR~--~a~r~~klE~~ve~YKkKLed----~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 288 AEAREARALRDELDELRE--KADRADKLENEVEKYKKKLED----LEDLKRQVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888877 445889999988888877665 4444444555555555555555555555444
No 118
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.12 E-value=41 Score=36.12 Aligned_cols=190 Identities=12% Similarity=0.109 Sum_probs=99.1
Q ss_pred CCCChhhhHHHHhhhHhh--HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhCh---
Q 019366 109 TSPEPRLVINYLQTLKSS--EEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDP--- 183 (342)
Q Consensus 109 ~~~~p~lv~~~l~~lk~s--E~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDP--- 183 (342)
++++|.+...-+..+=+. +..+......+.+--..+-.++....+++.+....+..+|..+.--..+. ..+.+.
T Consensus 162 ~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~-~~~~~~~L~ 240 (754)
T TIGR01005 162 RSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNN-ATLATQQLA 240 (754)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC-ccchHHHHH
Confidence 457777665555444322 22233333344444577888899999999999999999998864321110 111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---cCCCc--------hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhh
Q 019366 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVS---FTANS--------KMGKALMAKCKTLQEENDEIGRQNEEGETHQLS 252 (342)
Q Consensus 184 AVNlef~rLR~eLee~~~klk~aq~eL~A~k---FtPqS--------~~GKrLMAKCR~LqeENEELGr~lseGria~Le 252 (342)
.+|-.+...+.++..++.++..++..+..-+ ..|.. +.=..|-.+.-.|+.+-.+|.......+ +
T Consensus 241 ~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~h--P-- 316 (754)
T TIGR01005 241 ELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANH--P-- 316 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCC--H--
Confidence 1222333444455555556666665553211 11111 2223344444455555556655444332 2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 253 VKLALQKSLNAELKSQ-FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 253 ~eLAlqK~~~eELrk~-~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
.+-..+.++++|+.+ .+++..++..+..+.+..+.....|+.++++.+.++
T Consensus 317 -~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~ 368 (754)
T TIGR01005 317 -RVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAAS 368 (754)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344555555554 344666666677777766666666666666654433
No 119
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=87.83 E-value=3.3 Score=31.93 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhH-HHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 257 LQKSLNAELKSQFEALYKHMDGLTDDVERSN-EMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 257 lqK~~~eELrk~~~eL~~~l~eLdeEvE~lq-stl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
--+..+..+...+++.++.|.+|+-|+-.+. +.-..++.+|+.-+.++..|+.+|.+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5667778888899999999999999999998 45788999999999999999998864
No 120
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.83 E-value=19 Score=33.32 Aligned_cols=173 Identities=17% Similarity=0.242 Sum_probs=92.0
Q ss_pred HHHhhHHhhhhchhhhHhh-------HHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHH
Q 019366 63 MILSLRESLQNCKDTLATC-------QLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE 135 (342)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~-------~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~ 135 (342)
+|-.+++.|...+..+|.. +.+++.+...+.+|.+.... .+..|...--+.....-......=..|+.|+.
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~--Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~ 109 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAEL--ALSKGREDLARAALIEKQKAQELAEALERELA 109 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777765 55778888999999984333 55555444333333333333334444555665
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchH--HHHHhh--hC-hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 136 KAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLM--QARRLL--LD-PAIHEEFRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 136 eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~--qlR~~L--lD-PAVNlef~rLR~eLee~~~klk~aq~eL 210 (342)
..+.-=.-|-.+|...+..|.++++.-..|.+-+..... .....+ +| ..-...|.||+..+...+...+..
T Consensus 110 ~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~---- 185 (219)
T TIGR02977 110 AVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESY---- 185 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHh----
Confidence 555555555666666666666666655444333211111 111111 11 122345777777766655543332
Q ss_pred hhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHH
Q 019366 211 AAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSL 261 (342)
Q Consensus 211 ~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~ 261 (342)
+. -++ ..|..+..+||. =..++.+|+.+|..
T Consensus 186 -~~-~~~------------~~l~~~l~~l~~------~~~vd~eLa~LK~~ 216 (219)
T TIGR02977 186 -DL-GRK------------PSLEDEFAELEA------DDEIERELAALKAK 216 (219)
T ss_pred -hc-cCC------------CCHHHHHHHhcC------CChHHHHHHHHHhh
Confidence 11 011 235556666662 13567777776654
No 121
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.79 E-value=54 Score=37.22 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhh----hChhhHHHHHHHHHHHHHHHHHHHHHHHhh-------hhcccCCC---c
Q 019366 154 EIAELKSAVRDLKAQLKPPLMQARRLL----LDPAIHEEFRRLKNLVEEKDKKVKELEENI-------AAVSFTAN---S 219 (342)
Q Consensus 154 Eiqel~s~l~dlk~~~~pss~qlR~~L----lDPAVNlef~rLR~eLee~~~klk~aq~eL-------~A~kFtPq---S 219 (342)
+.+.++.++..||.+..-.+...|..+ .-|.-|.++.+++.+.+....+...+..+| ..||-+.. -
T Consensus 700 ~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~ 779 (970)
T KOG0946|consen 700 EHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAEL 779 (970)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhc
Confidence 344555666666666542222222222 245667777788777777777666666666 23333333 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 220 KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 220 ~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
+.|+-+. -.+.-++=+|++.+ .+.+.+.+.-+.....-++.+.+.+...+....+.+++|-++=..+-.++..
T Consensus 780 ~~~~~~~-~~~~qeqv~El~~~------l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ 852 (970)
T KOG0946|consen 780 SQGSLND-NLGDQEQVIELLKN------LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKL 852 (970)
T ss_pred ccchhhh-hhhhHHHHHHHHHh------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHH
Confidence 4454333 33333444444444 2334444555555555556666666666777777777777666556566666
Q ss_pred hHHHHHHHHHHHh
Q 019366 300 NDHELEKLKHELR 312 (342)
Q Consensus 300 ~~~~l~~lk~eL~ 312 (342)
..+++..|+.++.
T Consensus 853 ieq~ls~l~~~~k 865 (970)
T KOG0946|consen 853 IEQKLSNLQEKIK 865 (970)
T ss_pred HHHHHHHHHHHhh
Confidence 6665555554443
No 122
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.69 E-value=44 Score=35.98 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=14.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 292 MLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 292 ~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
.|++.....+.+|.+|+.+++.+.-
T Consensus 361 ~l~~~~e~~k~~ie~L~~el~~~e~ 385 (546)
T PF07888_consen 361 ALQHSAEADKDEIEKLSRELQMLEE 385 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444455567777777766654
No 123
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=87.67 E-value=52 Score=36.76 Aligned_cols=177 Identities=23% Similarity=0.312 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhh--HHHHHHHHHHHHHHHHHHHH
Q 019366 128 EMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAI--HEEFRRLKNLVEEKDKKVKE 205 (342)
Q Consensus 128 ~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAV--Nlef~rLR~eLee~~~klk~ 205 (342)
..||+||..+...=.++--|++-++-=+-+|..||+-.|--+. +-+.|-++ ..+|..+|.+|+ .++.+
T Consensus 27 ~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~e-------q~i~~~~~~~s~e~e~~~~~le---~~l~e 96 (769)
T PF05911_consen 27 ASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQE-------QKIHEAVAKKSKEWEKIKSELE---AKLAE 96 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHhHHHHHHHHHHH---HHHHH
Confidence 4689999999888889999999999999999999988877632 22233222 245666665554 44555
Q ss_pred HHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 019366 206 LEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVER 285 (342)
Q Consensus 206 aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~ 285 (342)
+...|...+- -.+...+.|.+|++.+.+=+++.+. .+..+.-|...|....+.|..||..+.-+.+-|+=.++|.+-
T Consensus 97 ~~~~l~~~~~-e~~~l~~~l~~~~~~i~~l~~~~~~--~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~ 173 (769)
T PF05911_consen 97 LSKRLAESAA-ENSALSKALQEKEKLIAELSEEKSQ--AEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREY 173 (769)
T ss_pred HHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555533321 1346788899999999888887776 445667788888888888888888877777777766666654
Q ss_pred hHHHHHH---HH----HHHHHhHHHHHHHHHHHhhhhhc
Q 019366 286 SNEMVLM---LR----EKLEENDHELEKLKHELRQKSVL 317 (342)
Q Consensus 286 lqstl~~---LQ----qeL~~~~~~l~~lk~eL~~~~~~ 317 (342)
.....-. +| ..+.+...+=.||...++++-|.
T Consensus 174 ~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpg 212 (769)
T PF05911_consen 174 SRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPG 212 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4333221 11 24566677777888888887773
No 124
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.66 E-value=30 Score=33.95 Aligned_cols=92 Identities=22% Similarity=0.278 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhH--
Q 019366 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEND-- 301 (342)
Q Consensus 224 rLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~-- 301 (342)
.|+.++..|++--.|++.. ....+..|-.+|+.++..++.+|+.+.++..-+..++.+++.+.+.+..++.+|+.++
T Consensus 188 ~L~~e~~~Lk~~~~e~~~~-D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 188 ELEEELENLKQLVEEIESC-DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666665542 2234666666777777777777777777777777777777777777766776666644
Q ss_pred ---------HHHHHHHHHHhhhhh
Q 019366 302 ---------HELEKLKHELRQKSV 316 (342)
Q Consensus 302 ---------~~l~~lk~eL~~~~~ 316 (342)
.++.+|+..+...+.
T Consensus 267 ~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 267 REECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHH
Confidence 457778777655544
No 125
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.54 E-value=7.1 Score=30.89 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 250 QLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 250 ~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
.|+.+++.++..++-+...+.-.+..+.-|..|-++.-..|-..-.++.+.+.+++.|+.+|+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666667777777777776677777777777777777777777777777777777777654
No 126
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.50 E-value=23 Score=32.61 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 019366 189 FRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 189 f~rLR~eLee~~~klk~aq~eL 210 (342)
|..++..|.......+.++.++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 127
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.28 E-value=20 Score=31.68 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
....+...+...+.+.+.+.++.+-+.+....++.+...+..+++........++.++..+
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444444433
No 128
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.28 E-value=20 Score=31.61 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=43.1
Q ss_pred hHhhHHHHHHHHHHHHhHH---HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHH
Q 019366 123 LKSSEEMLKEQLEKAKKKE---AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK 199 (342)
Q Consensus 123 lk~sE~~LkeQl~eakrRE---nvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~ 199 (342)
....++.+++-=....+.| ..|..++...|.++..+...+.+++....-+.. +..-.+ +.+.-|+-|-.+|+.+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--~~~~~E-~l~rriq~LEeele~a 92 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--RKSNAE-QLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHhHH-HHHhhHHHHHHHHHHH
Confidence 3334444444333333333 455666666666666666666666555332211 111111 5555666666666666
Q ss_pred HHHHHHHHHhh
Q 019366 200 DKKVKELEENI 210 (342)
Q Consensus 200 ~~klk~aq~eL 210 (342)
+.+|+.+...|
T Consensus 93 e~~L~e~~ekl 103 (143)
T PF12718_consen 93 EKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHH
Confidence 66665555444
No 129
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.22 E-value=25 Score=32.65 Aligned_cols=164 Identities=23% Similarity=0.358 Sum_probs=95.9
Q ss_pred hhHHhhhhchhhhHhhHHHHHHHHHHHHHHHH-hccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHH
Q 019366 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHS-SFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (342)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~-~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvl 144 (342)
.|+.-|.+....|..|..|...-+ .+++|+. +++ -+....+--|.++..+-..+ -.|+++|..++.++..+
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk-~lq~Rq~kAL~---k~e~~e~~Lpqll~~h~eEv----r~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLK-QLQKRQEKALQ---KYEDTEAELPQLLQRHNEEV----RVLRERLRKSQEQEREL 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 344444444444444444443322 2345543 111 12233334465554433333 34667888889999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccCCCc---
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA--AVSFTANS--- 219 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~--A~kFtPqS--- 219 (342)
-.++-.++.+|+.+..++..|+..... +++.-=-....-+..+..+++..+.++..+.-.+. .-.|.-+.
T Consensus 88 ~~klk~~~~el~k~~~~l~~L~~L~~d-----knL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e 162 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKDELKHLKKLSED-----KNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASE 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999998776321 11111112245567778888888888877765553 23333322
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhh
Q 019366 220 -KMGKALMAKCKTLQEENDEIGRQ 242 (342)
Q Consensus 220 -~~GKrLMAKCR~LqeENEELGr~ 242 (342)
.-.+.++..|..|+.|++.|...
T Consensus 163 ~kK~~~~~~~~~~l~~ei~~L~~k 186 (194)
T PF15619_consen 163 KKKHKEAQEEVKSLQEEIQRLNQK 186 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777776553
No 130
>PRK00295 hypothetical protein; Provisional
Probab=87.16 E-value=4.9 Score=31.49 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=20.5
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 279 LTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
.+.-++.||..|+.+|++|.....++..|...|...
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555566666666666666666665555443
No 131
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=87.11 E-value=0.19 Score=53.74 Aligned_cols=49 Identities=27% Similarity=0.476 Sum_probs=0.0
Q ss_pred HhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 120 LQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 120 l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
+..|+.--..|++.+.+..---.=+-.++...+.+|.+++..+.+|...
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~ 289 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAE 289 (713)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555553221111112334455566666666666665443
No 132
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.79 E-value=4 Score=38.22 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=27.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
..|+.+++..+....+++.+ ......++.+.+......+..|.++.++.+.+++.++++++.
T Consensus 96 p~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333332 223334444444444444444555555555555555544443
No 133
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.69 E-value=74 Score=37.51 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=7.4
Q ss_pred cCCCCCCCCCCCC
Q 019366 25 RSGSKRSFGDIED 37 (342)
Q Consensus 25 ~~~~~~~~~~~~~ 37 (342)
-+|+-=||-+|--
T Consensus 390 f~Gn~LPFIGfTy 402 (1317)
T KOG0612|consen 390 FSGNHLPFIGFTY 402 (1317)
T ss_pred CcCCcCCeeeeee
Confidence 4566666665543
No 134
>PRK01156 chromosome segregation protein; Provisional
Probab=86.67 E-value=54 Score=35.91 Aligned_cols=72 Identities=11% Similarity=0.229 Sum_probs=34.4
Q ss_pred HhhhhchhhhHhhHHHHHHHHHHHHHHHHhcc---CcCCCC-CCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhH
Q 019366 69 ESLQNCKDTLATCQLELEAAKSEIQKWHSSFQ---NELFIP-PGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK 140 (342)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~---~e~~i~-a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrR 140 (342)
.-+.+....+..+..++..-+..+..-+.+.. ..+.-| .+++-++.....++......=..+..++.+..++
T Consensus 416 ~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~ 491 (895)
T PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIE 491 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555544444333 233322 3344455566666555554444444455444433
No 135
>PRK02119 hypothetical protein; Provisional
Probab=86.62 E-value=4.6 Score=32.10 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 266 KSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 266 rk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
..++.+|+--+.-.+.-++.||..|..+|++|.....++..|...|...
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444455555566666777777777777777666666554
No 136
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=86.25 E-value=68 Score=36.69 Aligned_cols=109 Identities=24% Similarity=0.303 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHH---HHHHHHHHHHHhhhh--hcccc-----------hhhhHHHHHH
Q 019366 195 LVEEKDKKVKELEENIAAVSFTANSKMGKALMAK---CKTLQEENDEIGRQN--EEGET-----------HQLSVKLALQ 258 (342)
Q Consensus 195 eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAK---CR~LqeENEELGr~l--seGri-----------a~Le~eLAlq 258 (342)
-++..-+.+.+.-.++.||+ |..|+-|-.| .|.|++|.+++.... +-|++ -.|..+++-.
T Consensus 260 ~lq~sak~ieE~m~qlk~kn----s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadi 335 (1265)
T KOG0976|consen 260 DLQASAKEIEEKMRQLKAKN----SVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADI 335 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666664 6666666543 566666666664322 22322 2344555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 259 KSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 259 K~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
+-...|-|...+.+.+-+.+|+..-...-..+.-+|+.++.-..++.+|
T Consensus 336 rc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL 384 (1265)
T KOG0976|consen 336 RCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSL 384 (1265)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666666555554444444555444444444333
No 137
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.19 E-value=38 Score=33.65 Aligned_cols=92 Identities=23% Similarity=0.321 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhh-------hhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHH
Q 019366 224 ALMAKCKTLQEENDEIGR-------QNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREK 296 (342)
Q Consensus 224 rLMAKCR~LqeENEELGr-------~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqe 296 (342)
.|+.+++.|++-.+|+.. .+- .+++.+..++...+....+++.++.++..-|.+..+.....++.|..++..
T Consensus 183 ~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 183 ALEEELRQLKQLEDELEDCDPTELDRAK-EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555544322 112 345555666666666666666666666666666666666666666666665
Q ss_pred HHHh----HHHHHHHHHHHhhhhh
Q 019366 297 LEEN----DHELEKLKHELRQKSV 316 (342)
Q Consensus 297 L~~~----~~~l~~lk~eL~~~~~ 316 (342)
+.+. ..++.+|+..+...+.
T Consensus 262 ~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 262 LEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH
Confidence 5443 3577888877766655
No 138
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.76 E-value=77 Score=36.84 Aligned_cols=36 Identities=8% Similarity=0.156 Sum_probs=28.7
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 133 Ql~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
+..+.+.|-..|-..+.+-.+++.+++.++..++..
T Consensus 59 ~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~ 94 (1109)
T PRK10929 59 ERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDE 94 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 455677788888899999999999999988766543
No 139
>PRK10698 phage shock protein PspA; Provisional
Probab=85.41 E-value=26 Score=32.92 Aligned_cols=141 Identities=17% Similarity=0.243 Sum_probs=68.0
Q ss_pred hHHHhhHHhhhhchhhhHh-------hHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHH
Q 019366 62 GMILSLRESLQNCKDTLAT-------CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQL 134 (342)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~-------~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl 134 (342)
=+|-.+++.|...+..+|. ++..+..+...+.+|.... ...+..|...--+--...=+...+.=..|+.|+
T Consensus 31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA--~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~ 108 (222)
T PRK10698 31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA--ELALRKEKEDLARAALIEKQKLTDLIATLEHEV 108 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888887776 5567888899999998833 335655544333321111111111222233333
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc--hHHHHHh----hhChhhHHHHHHHHHHHHHHHHHHHH
Q 019366 135 EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP--LMQARRL----LLDPAIHEEFRRLKNLVEEKDKKVKE 205 (342)
Q Consensus 135 ~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~ps--s~qlR~~----LlDPAVNlef~rLR~eLee~~~klk~ 205 (342)
.....--.-|-..+..++..|.++++.-..|.+-+... ..++... =.+.++. .|.+|...|...+.+.+-
T Consensus 109 ~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~-~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 109 TLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMA-RFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHH-HHHHHHHHHHHHHHHHhH
Confidence 33333223333334444444444444333332222111 1111111 1233333 567777777777766654
No 140
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=84.95 E-value=18 Score=37.08 Aligned_cols=94 Identities=22% Similarity=0.255 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchh---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhH-----HHHHHHH
Q 019366 223 KALMAKCKTLQEENDEIGRQNEEGETHQ---LSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSN-----EMVLMLR 294 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~lseGria~---Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lq-----stl~~LQ 294 (342)
+.++.|...+....+||.+.++..-+.. --.+++...+....+-..|.+......++...-+-+. ++..+.+
T Consensus 3 ~~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~ 82 (363)
T COG0216 3 PSLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAE 82 (363)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 4578888888888889988888774322 2233333344444555555555555555554444433 6677899
Q ss_pred HHHHHhHHHHHHHHHHHhhhhh
Q 019366 295 EKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 295 qeL~~~~~~l~~lk~eL~~~~~ 316 (342)
++|...+..+..|..+|+..=.
T Consensus 83 ~Ei~~~~~~~~~le~~L~~lLl 104 (363)
T COG0216 83 EEIKELEAKIEELEEELKILLL 104 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999987644
No 141
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=84.95 E-value=4.3 Score=31.64 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=18.4
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 279 LTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
.+.-++.||..|..+|.+|.....++..|...|...+
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555666666666666666665555544
No 142
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=84.88 E-value=33 Score=37.42 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 019366 183 PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN 262 (342)
Q Consensus 183 PAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~ 262 (342)
|+|+-.|++-...+..+=.+...+.. -++.|.++...+.+|-+.-+---+++-+-.+|.+.+..+...
T Consensus 300 psv~~Llqe~~a~v~q~~~e~~~l~~------------eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l 367 (632)
T PF14817_consen 300 PSVHQLLQEQWAHVQQFLAEEDALNK------------EAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASL 367 (632)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 66777777777777666665555554 456677777777777666655557777778888999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHH
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNE 288 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqs 288 (342)
+-|+.....|.+...+--+....++.
T Consensus 368 ~~L~se~q~L~~~~~~r~e~~~~Lq~ 393 (632)
T PF14817_consen 368 NALRSECQRLKEAAAERQEALRSLQA 393 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888777666655443
No 143
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=84.56 E-value=34 Score=34.42 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCC-----CCcccccccccccccccccCCCchhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHh
Q 019366 24 RRSGSKRSFGDIE-----DDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSS 98 (342)
Q Consensus 24 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~ 98 (342)
+.++-|+...+++ +.|..+++.+. .---+.++-..|+.-...+..+..++..|..|+++|.=.+..
T Consensus 38 r~q~LKkk~~el~~~~~~~~d~~~~~~~~---------~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~ 108 (319)
T PF09789_consen 38 RYQALKKKYRELIQEAAGFGDPSIPPEKE---------NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREK 108 (319)
T ss_pred HHHHHHHHHHHhhhhhcccCCccCCcccc---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Q ss_pred ccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 019366 99 FQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARR 178 (342)
Q Consensus 99 f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~ 178 (342)
+..-.....+..+.+.. ..---||..|=.....+.++..-++.
T Consensus 109 la~~r~~~~~~~~~~~~-----------------------~ere~lV~qLEk~~~q~~qLe~d~qs-------------- 151 (319)
T PF09789_consen 109 LARQRVGDEGIGARHFP-----------------------HEREDLVEQLEKLREQIEQLERDLQS-------------- 151 (319)
T ss_pred HHhhhhhhccccccccc-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q ss_pred hhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHH
Q 019366 179 LLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQ 258 (342)
Q Consensus 179 ~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlq 258 (342)
+--+...+..+-..++.|+..++.+|+.+=-.-.+ +++ =...|.-||-.|-- ||.+++.+..+.
T Consensus 152 ------~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~----riv-DIDaLi~ENRyL~e-----rl~q~qeE~~l~ 215 (319)
T PF09789_consen 152 ------LLDEKEELVTERDAYKCKAHRLNHELNYILNGDEN----RIV-DIDALIMENRYLKE-----RLKQLQEEKELL 215 (319)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----Ccc-cHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 019366 259 KSLNAELKSQFE 270 (342)
Q Consensus 259 K~~~eELrk~~~ 270 (342)
+..+.-.++..+
T Consensus 216 k~~i~KYK~~le 227 (319)
T PF09789_consen 216 KQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHH
No 144
>PRK02793 phi X174 lysis protein; Provisional
Probab=84.54 E-value=6.3 Score=31.20 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=24.9
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 271 ALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 271 eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
+|+--+.=.+.-++.||..|..+|.+|.....++..|...|...+
T Consensus 12 ~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 12 ELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333333444455566666666666666666666666555543
No 145
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.54 E-value=36 Score=32.06 Aligned_cols=102 Identities=19% Similarity=0.315 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCchhh-------HHHHHHHHHH----HHHHHHHhhhhhcccchhhhHHHHHHHH
Q 019366 192 LKNLVEEKDKKVKELEENIAAVSFTANSKMG-------KALMAKCKTL----QEENDEIGRQNEEGETHQLSVKLALQKS 260 (342)
Q Consensus 192 LR~eLee~~~klk~aq~eL~A~kFtPqS~~G-------KrLMAKCR~L----qeENEELGr~lseGria~Le~eLAlqK~ 260 (342)
|...+.+.+.-|++.+ .-.|+|.-... ..|..+.+.. +++|+.|-. ..+.
T Consensus 125 l~~~l~ea~~mL~emr----~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~---------------~i~~ 185 (264)
T PF06008_consen 125 LQRALAEAQRMLEEMR----KRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAE---------------AIRD 185 (264)
T ss_pred HHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHH---------------HHHH
Confidence 3344444444444444 34688877443 3444444443 234443333 3334
Q ss_pred HHHHHHHHHHHHHHHHhh---hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 261 LNAELKSQFEALYKHMDG---LTDDVERSNEMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 261 ~~eELrk~~~eL~~~l~e---LdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
...+....+.++.+++.+ ...++++++.-.-..-+++..+...|...+.++.
T Consensus 186 ~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~ 240 (264)
T PF06008_consen 186 DLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVS 240 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444556666666665 4456677777777777777777777777766554
No 146
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.45 E-value=34 Score=31.59 Aligned_cols=142 Identities=17% Similarity=0.261 Sum_probs=68.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 019366 142 AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPA--IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS 219 (342)
Q Consensus 142 nvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPA--VNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS 219 (342)
+..-.+|..+..++++++.....++.. ...++.++. -......++.++...+.++..++..+..+
T Consensus 16 ~C~~~~L~~~~~~l~~~~~~~~~l~~~-------i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~------ 82 (302)
T PF10186_consen 16 NCVNNRLLELRSELQQLKEENEELRRR-------IEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERL------ 82 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 334446777777777777777777655 222222111 33444555566665555555444443332
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 220 KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 220 ~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
..+++...+ ++..+-..+...++...-.....+....++.++..++......+..++.++..
T Consensus 83 -------------~~~i~~~r~-----~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 83 -------------RKRIEQKRE-----RLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred -------------HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 12222222222222222222233444555555666666666666666666666
Q ss_pred hHHHHHHHHHHHhhhhhc
Q 019366 300 NDHELEKLKHELRQKSVL 317 (342)
Q Consensus 300 ~~~~l~~lk~eL~~~~~~ 317 (342)
.+..+- .+|...-|.
T Consensus 145 ~r~~l~---~~l~~ifpI 159 (302)
T PF10186_consen 145 RRRQLI---QELSEIFPI 159 (302)
T ss_pred HHHHHH---HHHHHHhCc
Confidence 665554 344444443
No 147
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=84.44 E-value=13 Score=36.93 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=21.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMD 277 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~ 277 (342)
-+.+|+.+++-.+...+.|++-+.+|++--.
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLEQaND 122 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3557888888888888887777777655433
No 148
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.34 E-value=44 Score=32.80 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=30.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHH-----------HHHHHhHHHHHHHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLR-----------EKLEENDHELEKLKH 309 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQ-----------qeL~~~~~~l~~lk~ 309 (342)
..+..+|+..+....+++.+...+..-+.++.+....+++.|..++ .++...+..+..|+.
T Consensus 219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 219 AEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555554443 235555555555554
No 149
>PRK00736 hypothetical protein; Provisional
Probab=84.03 E-value=3.4 Score=32.42 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=19.9
Q ss_pred hhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 280 TDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 280 deEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
+.-+|.||..|+.+|.+|.....++..|...|..
T Consensus 18 e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 18 EKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666655544
No 150
>PRK00736 hypothetical protein; Provisional
Probab=83.83 E-value=8.7 Score=30.12 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=29.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 245 EGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 245 eGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
+.||..||+.+|.|...+ ++|.++|.....+++.|+..+..|.++|+.
T Consensus 4 e~Ri~~LE~klafqe~ti-------e~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTI-------EELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888775443 335555666666666655555555555543
No 151
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.72 E-value=26 Score=30.30 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=60.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
.++..|..++..++..++-|+..+.++..-+..+....-.++..+..++..++..+.++.+++.-+++...
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t 129 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT 129 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999988888888888888888888888888888888888888888877776654
No 152
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.55 E-value=71 Score=34.59 Aligned_cols=155 Identities=19% Similarity=0.271 Sum_probs=77.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhh------hhcccCCCch
Q 019366 147 TFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI------AAVSFTANSK 220 (342)
Q Consensus 147 rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL------~A~kFtPqS~ 220 (342)
.....++|++++..+|.+++....- +..-+-+ ....+..|..++++.+.+...+..++ -.+=++|+.+
T Consensus 322 ~~~~~~~el~~l~~~l~~l~~~i~~----~~~~~~~--l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~n 395 (594)
T PF05667_consen 322 EQEEQEQELEELQEQLDELESQIEE----LEAEIKM--LKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEEN 395 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3445566666666666666554211 0000000 11122334444444444444433333 3444555555
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHh
Q 019366 221 MGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEN 300 (342)
Q Consensus 221 ~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~ 300 (342)
+ .+|=+-|..-.+-..+|+.+-...|+ +|..++...+.....-.......- .++..+...+..+..+++.+
T Consensus 396 i-~kL~~~v~~s~~rl~~L~~qWe~~R~-pL~~e~r~lk~~~~~~~~e~~~~~-------~~ik~~r~~~k~~~~e~~~K 466 (594)
T PF05667_consen 396 I-AKLQALVEASEQRLVELAQQWEKHRA-PLIEEYRRLKEKASNRESESKQKL-------QEIKELREEIKEIEEEIRQK 466 (594)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhcchHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 5 55555555555555566665555543 555554444443332222222222 44555555666677777777
Q ss_pred HHHHHHHHHHHhhhhh
Q 019366 301 DHELEKLKHELRQKSV 316 (342)
Q Consensus 301 ~~~l~~lk~eL~~~~~ 316 (342)
+.....|+.+++....
T Consensus 467 ee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 467 EELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7777777777776543
No 153
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.37 E-value=12 Score=35.69 Aligned_cols=117 Identities=22% Similarity=0.369 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhh--cccchhhhHHHHHHHHHHHHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNE--EGETHQLSVKLALQKSLNAELKS 267 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~ls--eGria~Le~eLAlqK~~~eELrk 267 (342)
..|...|..++.+.+.++.+|..- --+...|-.+++.+++|=+.|-+... +--++.|......+..--..|..
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~-----e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEES-----EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777778888777642 24667788999999998888876432 22245555555555566666777
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 268 QFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 268 ~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
...+....+..|.++++.--.....||.+|..++....+-+.+|
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888777778888888888887777777666
No 154
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=83.30 E-value=34 Score=31.46 Aligned_cols=148 Identities=23% Similarity=0.297 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhC-hhhHHHHHHHHHHHHHHHHHHHH
Q 019366 127 EEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLD-PAIHEEFRRLKNLVEEKDKKVKE 205 (342)
Q Consensus 127 E~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlD-PAVNlef~rLR~eLee~~~klk~ 205 (342)
.+.|...|...+-|+..+ ..-.++| +-.-+.+| .|++.+| |.=++++.++|.++..+=.....
T Consensus 39 ~e~Ld~~L~~~~ar~~gI----cpvr~~l--y~~~F~EL----------IRQVTi~C~ERGlLL~rvrde~~~~l~~y~~ 102 (189)
T PF10211_consen 39 QEWLDKMLQQRQARETGI----CPVREEL--YSQCFDEL----------IRQVTIDCPERGLLLLRVRDEYRMTLDAYQT 102 (189)
T ss_pred HHHHHHHHHHhcCCcccc----cHHHHHH--HHHHHHHH----------HHHHHhCcHHHhHHHHHHHHHHHHHHHHHHH
Confidence 446666777777776421 1112333 22234444 4666665 67788889999888776666554
Q ss_pred HHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 019366 206 LEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVER 285 (342)
Q Consensus 206 aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~ 285 (342)
+-.... .| | .++ .|+.| .|+.--..+|..|+.++...+....+++...+.+.+-..+.
T Consensus 103 l~~s~~--~f------~----~rk-~l~~e---~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~------ 160 (189)
T PF10211_consen 103 LYESSI--AF------G----MRK-ALQAE---QGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL------ 160 (189)
T ss_pred HHHHHH--HH------H----HHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 443322 22 1 111 12221 12322333556666666666666666666655555544432
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 286 SNEMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 286 lqstl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
.+......+.++...+.....|++.|+
T Consensus 161 ~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 161 RQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222233344444444444444444443
No 155
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.21 E-value=29 Score=29.82 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=24.1
Q ss_pred HHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 019366 177 RRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (342)
Q Consensus 177 R~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~ 213 (342)
|-++.+-..--.+..||.++...+..+..++.+..+.
T Consensus 49 ~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 49 RELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666777777777777776666666543
No 156
>PRK04325 hypothetical protein; Provisional
Probab=83.05 E-value=11 Score=30.04 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
+.+|+--+.-.+.-+|.||..|+.+|.+|.....++..|...|...
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444555566666667777766666666666655544
No 157
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.99 E-value=15 Score=35.21 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhhhc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 230 KTLQEENDEIGRQNEE-GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 230 R~LqeENEELGr~lse-Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
...+.+|+.+.+.+.. |+ |+.+.+..+.-.+-|+.+.+....-++.++++++-|..+.--++.|-...-.+-++|+
T Consensus 130 ~~~~~~~~~lk~~~~~~~~---~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK---LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHHhhhcccc---hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4445566666555544 22 5555555555555555554444444444455555444444444444444444444444
Q ss_pred HHHh
Q 019366 309 HELR 312 (342)
Q Consensus 309 ~eL~ 312 (342)
++++
T Consensus 207 ~~i~ 210 (216)
T KOG1962|consen 207 EQIE 210 (216)
T ss_pred HHHh
Confidence 4443
No 158
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.97 E-value=1e+02 Score=35.91 Aligned_cols=49 Identities=29% Similarity=0.390 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
..+.+.+.++..=+..|..+||.+++.+..|.++++.....+..-+.++
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555556666666666666666666666666666666555555554444
No 159
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.65 E-value=38 Score=37.09 Aligned_cols=94 Identities=17% Similarity=0.299 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 019366 139 KKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTAN 218 (342)
Q Consensus 139 rREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPq 218 (342)
+.+.++..++...+.-+..+...+++|+.- +.+|+.++++.+.+|..++.++.
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~--------------------~ee~k~eie~L~~~l~~~~r~~~------- 467 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRE--------------------LEELKREIEKLESELERFRREVR------- 467 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 334777788888888888887777776543 45777777777777777777664
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 219 SKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALY 273 (342)
Q Consensus 219 S~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~ 273 (342)
...++. -+.+.++. +|..|+.+|.-.++.+++|++.+..+.
T Consensus 468 ~~~~~~--rei~~~~~------------~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 468 DKVRKD--REIRARDR------------RIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHhhh--HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 12233332 566777777788888888888877766
No 160
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=82.64 E-value=25 Score=31.53 Aligned_cols=87 Identities=23% Similarity=0.258 Sum_probs=57.4
Q ss_pred hhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHhhHH
Q 019366 210 IAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYK-HMDGLTDDVERSNE 288 (342)
Q Consensus 210 L~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~-~l~eLdeEvE~lqs 288 (342)
|.+-.|||+...+ +|.-.+.+..+|=+.-...-.. -..++.....++....+||+...-+.+ .+..+..+.+.++.
T Consensus 11 Le~~Gft~~QAe~--i~~~l~~~l~~~~~~~~~~~vt-k~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~ 87 (177)
T PF07798_consen 11 LEAAGFTEEQAEA--IMKALREVLNDSLEKVAQDLVT-KSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQR 87 (177)
T ss_pred HHHCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455899988554 7777777777765442221111 267888888888888888888776653 45566667777666
Q ss_pred HHHHHHHHHHH
Q 019366 289 MVLMLREKLEE 299 (342)
Q Consensus 289 tl~~LQqeL~~ 299 (342)
.|-.|.++|+.
T Consensus 88 eie~l~~~L~~ 98 (177)
T PF07798_consen 88 EIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 161
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=82.64 E-value=11 Score=38.53 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhhhHHHh
Q 019366 220 KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS--------------QFEALYKHMDGLTDDVER 285 (342)
Q Consensus 220 ~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk--------------~~~eL~~~l~eLdeEvE~ 285 (342)
..|+-|-+|.|++-+-||-|.+.-.+-.-++-|++ -++.++..|+. .+.-|+..+..++++.-+
T Consensus 68 aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~--qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~ 145 (401)
T PF06785_consen 68 AAGQLLQTKIRKITEKDEGLRKIRESVEERQQESE--QLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQC 145 (401)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 35788888999998888888765444333333333 44455544444 455566666677777777
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 286 SNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 286 lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
++-++-.++++..++..+...|..||..
T Consensus 146 lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 146 LQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777777777777776666555543
No 162
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.64 E-value=59 Score=33.96 Aligned_cols=132 Identities=18% Similarity=0.242 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHH-----
Q 019366 188 EFRRLKNLVEEKDKKVKEL-EENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSL----- 261 (342)
Q Consensus 188 ef~rLR~eLee~~~klk~a-q~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~----- 261 (342)
.+..+..++...+..++.+ +.+. -.|+|++...+....+++.|++...+|-..+..+.=.-..+.+...+..
T Consensus 117 ~l~e~~~El~~l~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~ 194 (511)
T PF09787_consen 117 RLQELDQELRRLRRQLEELQNEKS--RILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEI 194 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--ccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666 3333 3457777777777888899998888887766655444444443333332
Q ss_pred -HHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH----HHHhhhhhcccccC
Q 019366 262 -NAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK----HELRQKSVLEEDKN 322 (342)
Q Consensus 262 -~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk----~eL~~~~~~~~~~~ 322 (342)
...|.....-+. ++...-.++..++..+-.++..++..+.++..++ .-|+.++-....-+
T Consensus 195 ~~~~L~~~~~A~~-~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK 259 (511)
T PF09787_consen 195 ERQELEERPKALR-HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLK 259 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 223344444333 3333444666778888888888888888888888 33444444433333
No 163
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.63 E-value=15 Score=37.95 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=27.6
Q ss_pred hChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 181 lDPAVNlef~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
....+...+..|+.+|++.+.++..+++++.+..
T Consensus 65 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 98 (525)
T TIGR02231 65 TSRPDPERLAELRKQIRELEAELRDLEDRGDALK 98 (525)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888999999999999999998887765
No 164
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.58 E-value=36 Score=30.48 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=54.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchh
Q 019366 142 AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKM 221 (342)
Q Consensus 142 nvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~ 221 (342)
..+--++=+.|.++.........+-..... -..++..|+.++.....++..+..+|.++.
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn-------------~k~eie~L~~el~~lt~el~~L~~EL~~l~------- 79 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAEN-------------SKAEIETLEEELEELTSELNQLELELDTLR------- 79 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 444445556666666555544333222110 123566788888888888888777776654
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 019366 222 GKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDD 282 (342)
Q Consensus 222 GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeE 282 (342)
.|++.|.+++. ..+..+.+|......+..+|..+..+
T Consensus 80 ------------sEk~~L~k~lq------------~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 80 ------------SEKENLDKELQ------------KKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred ------------HHHHHHHHHHH------------HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56665555443 34445555555566666666655554
No 165
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.51 E-value=87 Score=34.86 Aligned_cols=219 Identities=20% Similarity=0.230 Sum_probs=141.5
Q ss_pred hhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHh
Q 019366 71 LQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAK 150 (342)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~ 150 (342)
|+...-.++.|=.+|+.-....-.|++... .-+-....+.-|++.-++|+..+ +|=+.|..++..
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~-----------~~re~~~tv~~LqeE~e~Lqskl----~~~~~l~~~~~~ 303 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREELA-----------TLRENRETVGLLQEELEGLQSKL----GRLEKLQSTLLG 303 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHhh
Confidence 555666666676777777777777777322 12223333444666656555544 455789999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-------c------------hHHH---HHhhhChhh-HHHHHHH-H------HHHHHHH
Q 019366 151 REQEIAELKSAVRDLKAQLKP-------P------------LMQA---RRLLLDPAI-HEEFRRL-K------NLVEEKD 200 (342)
Q Consensus 151 KEQEiqel~s~l~dlk~~~~p-------s------------s~ql---R~~LlDPAV-Nlef~rL-R------~eLee~~ 200 (342)
+|-|..++++.+..|...... - .+++ -+++.-|+- +..|.++ + ..+-+..
T Consensus 304 LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~ 383 (716)
T KOG4593|consen 304 LELENEDLLTKLQRWERADQEMGSLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEE 383 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999776322 0 0112 133444443 2223322 1 2333445
Q ss_pred HHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 201 KKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGE--THQLSVKLALQKSLNAELKSQFEALYKHMDG 278 (342)
Q Consensus 201 ~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGr--ia~Le~eLAlqK~~~eELrk~~~eL~~~l~e 278 (342)
.+++++.+.|. ++..||..+-.+...|-+.+.-.+ ..+|..++...++..++++.-++.++.+.-+
T Consensus 384 tklk~l~etl~------------~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e 451 (716)
T KOG4593|consen 384 TKLKELHETLA------------RRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLE 451 (716)
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHh
Confidence 56666666654 456677777666555554443322 3466777888888888888888888888888
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 279 LTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
++.-++.+...|--....+..+..++.-|+..|..++.
T Consensus 452 ~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q 489 (716)
T KOG4593|consen 452 MEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQ 489 (716)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777777778888888888888877777665
No 166
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.10 E-value=1.1e+02 Score=35.89 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 019366 190 RRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL 210 (342)
.+.+..+......+.++...+
T Consensus 810 ~~a~~~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 810 ARAARKAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 167
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.94 E-value=60 Score=32.63 Aligned_cols=91 Identities=15% Similarity=0.280 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 019366 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (342)
Q Consensus 186 Nlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eEL 265 (342)
|.-+..|-.+|-.+...+..-|.++...- .-..-|=.||+.+-.||+||+..+...|-.+ -. +...+.+|
T Consensus 212 n~qia~LseELa~k~Ee~~rQQEEIt~Ll-----sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q----~~-L~aEL~el 281 (306)
T PF04849_consen 212 NQQIASLSEELARKTEENRRQQEEITSLL-----SQIVDLQQRCKQLAAENEELQQHLQASKESQ----RQ-LQAELQEL 281 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HH-HHHHHHHH
Confidence 34455666666666666666666664432 1223355699999999999999888654332 22 23447788
Q ss_pred HHHHHHHHHHHhhhhhHHHhh
Q 019366 266 KSQFEALYKHMDGLTDDVERS 286 (342)
Q Consensus 266 rk~~~eL~~~l~eLdeEvE~l 286 (342)
+..|.++...+.+..+++..+
T Consensus 282 qdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 282 QDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888777666543
No 168
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=81.85 E-value=61 Score=32.68 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=48.1
Q ss_pred HHhhhhchhhhHhhHHHHHHHHHHHHHHHHhcc-CcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhH-HHHHH
Q 019366 68 RESLQNCKDTLATCQLELEAAKSEIQKWHSSFQ-NELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK-EAAFI 145 (342)
Q Consensus 68 r~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~-~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrR-Envll 145 (342)
|.-|..++....+++.++++-+....+-..... .|.||.| .+.-.|+.|+...+.|-..+..-.-+ =|.|.
T Consensus 40 k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN-------~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~ 112 (310)
T PF09755_consen 40 KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISN-------TLLKKLQQLKKEKETLALKYEQEEEFLTNDLS 112 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555444433222 2556633 45566777777777665444221111 17777
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 019366 146 VTFAKREQEIAELKSAVR 163 (342)
Q Consensus 146 ~rLA~KEQEiqel~s~l~ 163 (342)
.+|...-+|-.++...+.
T Consensus 113 rkl~qLr~EK~~lE~~Le 130 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLE 130 (310)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777666666553
No 169
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=81.69 E-value=92 Score=34.61 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=13.2
Q ss_pred hHHHhhHHHHHHHHHHHHHhHHH
Q 019366 281 DDVERSNEMVLMLREKLEENDHE 303 (342)
Q Consensus 281 eEvE~lqstl~~LQqeL~~~~~~ 303 (342)
...|.||+.+..|-+|+++++..
T Consensus 461 sA~ed~Qeqn~kL~~el~ekdd~ 483 (698)
T KOG0978|consen 461 SAFEDMQEQNQKLLQELREKDDK 483 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 45555666666666666655543
No 170
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.34 E-value=42 Score=30.51 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=35.6
Q ss_pred HHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 019366 174 MQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQ 242 (342)
Q Consensus 174 ~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~ 242 (342)
+.+-.-+.||. .-|...|.+.+..+..++..+..+. ...++|-.+...+..+.+++...
T Consensus 15 ~~~ld~~EDP~-----~~l~q~ird~e~~l~~a~~~~a~~~-----a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 15 NELLDKAEDPE-----KMLEQAIRDMEEQLRKARQALARVM-----ANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHhhcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567887 4566777777777777777776554 34455555555555555554443
No 171
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=81.14 E-value=61 Score=32.19 Aligned_cols=178 Identities=12% Similarity=0.134 Sum_probs=97.9
Q ss_pred CCCCChhhhHHHHhhhHh--hHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChh-
Q 019366 108 GTSPEPRLVINYLQTLKS--SEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPA- 184 (342)
Q Consensus 108 ~~~~~p~lv~~~l~~lk~--sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPA- 184 (342)
-++++|.....-+..+-+ .+..+......+.+--..+-.++...++++.+....+..+|..+.- +||.
T Consensus 138 ~~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i---------~~~~~ 208 (444)
T TIGR03017 138 FSGVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI---------VSSDE 208 (444)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------cccCc
Confidence 356788776655554432 1222233334444556788999999999999999999999988632 2221
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------cCCCchhhHHHHHHHHHHHHHHHHHhhhhhccc--chhhh
Q 019366 185 ----IHEEFRRLKNLVEEKDKKVKELEENIAAVS------FTANSKMGKALMAKCKTLQEENDEIGRQNEEGE--THQLS 252 (342)
Q Consensus 185 ----VNlef~rLR~eLee~~~klk~aq~eL~A~k------FtPqS~~GKrLMAKCR~LqeENEELGr~lseGr--ia~Le 252 (342)
+..-+..|...+...+.+...++..+.+.. -...++.=..|-++...++.+-.+|......++ |..|.
T Consensus 209 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~ 288 (444)
T TIGR03017 209 RLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQ 288 (444)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 122334555555556555555554443221 011233334577788888888888877665553 33344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHh
Q 019366 253 VKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEN 300 (342)
Q Consensus 253 ~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~ 300 (342)
.+++..+.... .++..+...+..+.+.....+..|..++++.
T Consensus 289 ~~i~~l~~~l~------~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 330 (444)
T TIGR03017 289 AEINSLKSQLN------AEIKKVTSSVGTNSRILKQREAELREALENQ 330 (444)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433322 2233344444444444444444444444433
No 172
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.69 E-value=22 Score=31.25 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=36.9
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 272 LYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 272 L~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
-...+.+|++..|.+.-.|..|+.+-+..+++++.|+.+|+.+-.
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677888888888888888888888889999999988887654
No 173
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=80.58 E-value=76 Score=35.55 Aligned_cols=89 Identities=24% Similarity=0.341 Sum_probs=54.6
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHH----------HHHHHHHH
Q 019366 137 AKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE----------KDKKVKEL 206 (342)
Q Consensus 137 akrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee----------~~~klk~a 206 (342)
.++||... .--.-++-|+..|+-+|...|.. .+.+.+|+.+..|.+|+.++.. .+.++.-+
T Consensus 421 ~~~~~~~~-~~~~~Le~elekLk~eilKAk~s--------~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~L 491 (762)
T PLN03229 421 MKKREAVK-TPVRELEGEVEKLKEQILKAKES--------SSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENL 491 (762)
T ss_pred cchhccCC-CCCccHHHHHHHHHHHHHhcccc--------cCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34455333 22334555666666666443311 3577888888888888887763 46777778
Q ss_pred HHhhhhcccCCCchhhHHHHHHHHHHHHH
Q 019366 207 EENIAAVSFTANSKMGKALMAKCKTLQEE 235 (342)
Q Consensus 207 q~eL~A~kFtPqS~~GKrLMAKCR~LqeE 235 (342)
+++++-.+ .++..+---|+.|..+|.+|
T Consensus 492 r~E~sKa~-~~~~~~~~~L~eK~~kLk~E 519 (762)
T PLN03229 492 REEFSKAN-SQDQLMHPVLMEKIEKLKDE 519 (762)
T ss_pred HHHHHhcc-cccccccHHHHHHHHHHHHH
Confidence 87777665 44545555566666666655
No 174
>PF13166 AAA_13: AAA domain
Probab=80.40 E-value=83 Score=33.26 Aligned_cols=42 Identities=12% Similarity=0.350 Sum_probs=19.5
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 273 YKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
.+-+..+...+...+..|..|+.++.....-+.++..+|...
T Consensus 430 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 430 EKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 333333344444444444444444444444445555555554
No 175
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=80.35 E-value=55 Score=32.86 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhh--hcccchhhhHHHHHHHHHHHHH
Q 019366 191 RLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN--EEGETHQLSVKLALQKSLNAEL 265 (342)
Q Consensus 191 rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~l--seGria~Le~eLAlqK~~~eEL 265 (342)
-|-.-|+.-+.+++..+.+.++++=--++ ||.-|..|..-++-|...+ -++.|.-||..|+..|++++-|
T Consensus 43 SlEAaLqKQKqK~e~ek~e~s~LkREnq~-----l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~L 114 (307)
T PF10481_consen 43 SLEAALQKQKQKVEEEKNEYSALKRENQS-----LMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKL 114 (307)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888888888866555 9999999998877666533 3455556666666655544443
No 176
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.19 E-value=14 Score=36.68 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
++|.-+-..+..+++-|+..+.++.+.+.++..+.+.-...+-.+.......+.++..|+.+|.++.
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777777777777776555555555555555555555555555555443
No 177
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=80.00 E-value=1.1e+02 Score=34.48 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 253 VKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 253 ~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
+.+++.+..+..|+++...--.-.-++..+.-..|..+-.|+.+..++..++.+++.++
T Consensus 704 ~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 704 IQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776666666666666677777777777777777666666665443
No 178
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=79.44 E-value=1.3e+02 Score=35.03 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=18.0
Q ss_pred hhhchhhhHhhHHHHHHHHHHHHHHHHhccC
Q 019366 71 LQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (342)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~ 101 (342)
.+.-+.....++..++.|-.++..-+....+
T Consensus 60 ~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 60 RKGSLERAKQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3344455666666666666666665555443
No 179
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=79.38 E-value=48 Score=33.13 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=50.7
Q ss_pred CchhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHH
Q 019366 58 GVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQ 133 (342)
Q Consensus 58 ~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQ 133 (342)
--..++|=-+++||.+-+..|+.++.+++.++..|.++...+.+.. .+... .+.+++..+.....++.+.
T Consensus 70 ~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~-----~~~~~-~~~n~~~~~~~~t~~la~~ 139 (301)
T PF06120_consen 70 TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKG-----ITENG-YIINHLMSQADATRKLAEA 139 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCcch-HHHHHHHHHHHHHHHHHHH
Confidence 3356789999999999999999999999999999988877555522 22223 3347666666666655543
No 180
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.36 E-value=40 Score=31.00 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHH-HHHHHHHhHHHHHHHHHHHhh
Q 019366 256 ALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLM-LREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 256 AlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~-LQqeL~~~~~~l~~lk~eL~~ 313 (342)
......+..|+++..+|...+.++....+.+...... ++.+.+....++..|+..-++
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~q 181 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQ 181 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666665555555555433 333444455555555554443
No 181
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=79.11 E-value=53 Score=35.62 Aligned_cols=121 Identities=19% Similarity=0.218 Sum_probs=68.9
Q ss_pred hhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 019366 70 SLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFA 149 (342)
Q Consensus 70 ~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA 149 (342)
+++-....|..++.+|+.|...++.|++.- ..+.. +.+-....+.+ ..|+.|+..++.++.-+..++.
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~---~~~d~--~~ea~~~l~~~-------~~l~~ql~~l~~~~~~l~~~~~ 335 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQR---DSVDL--NLEAKAVLEQI-------VNVDNQLNELTFREAEISQLYK 335 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCC--CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 344456678888999999999999999832 22221 11122222222 4456677777777666665555
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCchHHH-HHhhhChhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 150 KREQEIAELKSAVRDLKAQLKPPLMQA-RRLLLDPAIHEEFRRLKNLVEEKDKKVKEL 206 (342)
Q Consensus 150 ~KEQEiqel~s~l~dlk~~~~pss~ql-R~~LlDPAVNlef~rLR~eLee~~~klk~a 206 (342)
..--.++.+..++..++... ..+ .++.--|..-.+|.+|..+.+-.+.-+..+
T Consensus 336 ~~hP~v~~l~~~~~~L~~~~----~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~l 389 (726)
T PRK09841 336 KDHPTYRALLEKRQTLEQER----KRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQL 389 (726)
T ss_pred ccCchHHHHHHHHHHHHHHH----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444555555444443331 111 123334777777788877777666655543
No 182
>PF14282 FlxA: FlxA-like protein
Probab=79.07 E-value=12 Score=31.46 Aligned_cols=61 Identities=13% Similarity=0.329 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 252 SVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 252 e~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
...++.++.++..|...+.+|..- ..+ +.|.-+..+-.||.+|.....+|..++.+..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~-~~~--~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD-SDL--DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333332 111 4555677778888888888888887776665544
No 183
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.05 E-value=13 Score=36.59 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
..+..+..-..+.++-|-.+..++..-+.+++.+++.+++.|..|+.+|..++..|...+.-|
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444445555554444444444444
No 184
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.89 E-value=13 Score=33.44 Aligned_cols=68 Identities=24% Similarity=0.303 Sum_probs=43.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDG-LTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~e-LdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
|++.+=.++...+...+.++++.+...+-... ..++.....+.|..|..+|++++.+++.|+.+.+..
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444433333 456666777777788888888888888888776654
No 185
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.87 E-value=1.5e+02 Score=35.39 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhH
Q 019366 261 LNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 261 ~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~ 301 (342)
-.++-...|.+..+.|++.+.++..-+..|...|++..-.+
T Consensus 1571 aL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE 1611 (1758)
T KOG0994|consen 1571 ALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAE 1611 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566677777888888888888877776654443
No 186
>PRK00846 hypothetical protein; Provisional
Probab=78.82 E-value=17 Score=29.67 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=20.1
Q ss_pred hhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 280 TDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 280 deEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
+.=+|.||..|..+|.++.....++..|...|....
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444555555566666666666666665555443
No 187
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.60 E-value=12 Score=29.83 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 019366 226 MAKCKTLQEENDEIGR 241 (342)
Q Consensus 226 MAKCR~LqeENEELGr 241 (342)
+..+..|+.||++|..
T Consensus 17 veti~~Lq~e~eeLke 32 (72)
T PF06005_consen 17 VETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 188
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.57 E-value=14 Score=36.36 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
..+...++.+.+...++.+...++..-|+.|+..++..++.+--++.++.+.+.++..|+.++...+-
T Consensus 27 ~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 27 ALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444477888888888888888888888888888888888888888888888888888877765544
No 189
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=78.53 E-value=65 Score=34.26 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhH-----------------HH----------------HHHHHHHHHH
Q 019366 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIH-----------------EE----------------FRRLKNLVEE 198 (342)
Q Consensus 152 EQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVN-----------------le----------------f~rLR~eLee 198 (342)
-.|||.|+++|+.+ .....++..+|..|+.+.+. ++ -..||-+|+.
T Consensus 228 l~EIq~Lk~qL~~~-~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~dle~ 306 (488)
T PF06548_consen 228 LEEIQDLKSQLQYY-TDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISLTEELRVDLES 306 (488)
T ss_pred HHHHHHHHHHHHhc-cccccccccccccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 47999999999854 22222334444444442221 11 1245777777
Q ss_pred HHHHHHHHHHhhhhcccCCC--------chhhH---------------HHHHHHHHHHHHHHHHhhhhhc----cc----
Q 019366 199 KDKKVKELEENIAAVSFTAN--------SKMGK---------------ALMAKCKTLQEENDEIGRQNEE----GE---- 247 (342)
Q Consensus 199 ~~~klk~aq~eL~A~kFtPq--------S~~GK---------------rLMAKCR~LqeENEELGr~lse----Gr---- 247 (342)
.+...+.++-+|..=|--.. ...|. -|.+|+|..++-.++..+.++- |.
T Consensus 307 ~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF 386 (488)
T PF06548_consen 307 SRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRF 386 (488)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 77777777766632221111 12232 3889999999999998877652 21
Q ss_pred chhhhHHHHHHH-----------HHHHHHHHHHHHHHHH----------HhhhhhHHHhhHHHHHHHHHHHHHhHHHHHH
Q 019366 248 THQLSVKLALQK-----------SLNAELKSQFEALYKH----------MDGLTDDVERSNEMVLMLREKLEENDHELEK 306 (342)
Q Consensus 248 ia~Le~eLAlqK-----------~~~eELrk~~~eL~~~----------l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~ 306 (342)
|..|-.+|...+ ..|..|+.++.+--+- +.+.++.+-.-+..-...+|+-.+++++|++
T Consensus 387 ~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiek 466 (488)
T PF06548_consen 387 INSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEK 466 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 4777777776654433 3444555555566677788888999999988
Q ss_pred HHH
Q 019366 307 LKH 309 (342)
Q Consensus 307 lk~ 309 (342)
|+.
T Consensus 467 LK~ 469 (488)
T PF06548_consen 467 LKR 469 (488)
T ss_pred HHH
Confidence 884
No 190
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=78.25 E-value=43 Score=35.25 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 019366 183 PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQ 242 (342)
Q Consensus 183 PAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~ 242 (342)
|.++..|.+|...+.+.+.++...-++= ...|.|.-...+-|+.+.+.|..|..++-..
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~~~I~~~-y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~ 68 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVHSMINKK-YSDFSPSLQSAKDLIERSKSLAREINDLLQS 68 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 5667778888888888888776543332 3499999999999999999999999666544
No 191
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.20 E-value=53 Score=36.46 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhh
Q 019366 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (342)
Q Consensus 189 f~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~G 222 (342)
+..|..+-.++++|++.+++.|.-++ ++++|
T Consensus 190 ltalEkeq~e~E~K~R~se~l~qevn---~~kv~ 220 (861)
T KOG1899|consen 190 LTALEKEQNETEKKLRLSENLMQEVN---QSKVG 220 (861)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHH---HHHHH
Confidence 45777888899999999999999998 77666
No 192
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.90 E-value=66 Score=30.67 Aligned_cols=47 Identities=9% Similarity=0.211 Sum_probs=21.9
Q ss_pred hhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH
Q 019366 114 RLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKS 160 (342)
Q Consensus 114 ~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s 160 (342)
++|..+|...++.=.++++.+...--+...+-+++......+.++..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444444444444444444444444444443333
No 193
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.80 E-value=18 Score=28.60 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhH
Q 019366 231 TLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 231 ~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~ 301 (342)
.|..++..|. ++...++.++......+.-|+..-.....-+.....++..+.+.+-.|+.+|....
T Consensus 2 ~Lea~~~~Lr-----~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLR-----NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666664 36778888888888888888888888888888888888887777777888776543
No 194
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=77.76 E-value=19 Score=34.06 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHH
Q 019366 188 EFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267 (342)
Q Consensus 188 ef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk 267 (342)
+.-|||.+|.+.+.++..++.....-.-..++ +...... +||.-|.+.+.+.-+++.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~--------~~~lvk~---------------e~EqLL~YK~~ql~~~~~ 153 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDS--------KPALVKR---------------EFEQLLDYKERQLRELEE 153 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc--------hHHHHHH---------------HHHHHHHHHHHHHHhhhc
Confidence 56799999999999999999888763111112 1111111 122222222222222210
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 268 QFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 268 ~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
.-..-..=+..+.+|++-..++|-.|+.=|+.++++|+.|+
T Consensus 154 ~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 154 GRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00000122445566666666777777777777777776654
No 195
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=77.51 E-value=77 Score=33.44 Aligned_cols=136 Identities=22% Similarity=0.310 Sum_probs=81.2
Q ss_pred hhchh-hhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHh
Q 019366 72 QNCKD-TLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAK 150 (342)
Q Consensus 72 ~~~~~-~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~ 150 (342)
+.|-+ .++-+..+++.|..|++.|+.-.+. .=+.+.+....-+.-+++.++..|.+|-+|+.+..+++.-+---|..
T Consensus 138 ~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~--Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e 215 (447)
T KOG2751|consen 138 EECMDVLLNKLDKEVEDAEDEVDTYKACLQR--LEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKE 215 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 4567889999999999999984333 11122232333445788999999999999999999999776665555
Q ss_pred HHHHHHHHHHH-HHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHH-HhhhhcccC
Q 019366 151 REQEIAELKSA-VRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELE-ENIAAVSFT 216 (342)
Q Consensus 151 KEQEiqel~s~-l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq-~eL~A~kFt 216 (342)
++++-.++... ...||-. ....|+. |.-+-++..|...++=...-++.+. ....+|+|+
T Consensus 216 ~~~~~~~~~e~~~~~~~ey----~~~~~q~---~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~ 276 (447)
T KOG2751|consen 216 LEFKAERLNEEEDQYWREY----NNFQRQL---IEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFH 276 (447)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhh---hcccchHHHHHHHHHHHHHHHHHHHhhhhhhheee
Confidence 55443333221 1122211 1112332 3344555566655555555555444 345677776
No 196
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=77.07 E-value=69 Score=30.48 Aligned_cols=36 Identities=31% Similarity=0.632 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc
Q 019366 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP 172 (342)
Q Consensus 130 LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~ps 172 (342)
||+||-++. .=++.|..||--+++++++.+......
T Consensus 15 LKqQLke~q-------~E~~~K~~Eiv~Lr~ql~e~~~~l~~~ 50 (202)
T PF06818_consen 15 LKQQLKESQ-------AEVNQKDSEIVSLRAQLRELRAELRNK 50 (202)
T ss_pred HHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 577776654 457889999999999999998886544
No 197
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=76.65 E-value=83 Score=31.22 Aligned_cols=194 Identities=14% Similarity=0.159 Sum_probs=114.0
Q ss_pred hHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC--cCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHh
Q 019366 62 GMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN--ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKK 139 (342)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~--e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakr 139 (342)
.++-.|..-.+.|...|..|+.-|..=..+..+.+..|.. |.--|. ..-+ ..|..-=.+++..|..|..
T Consensus 78 ~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S--~~~~-------~~l~~~~~~~~~~L~~A~~ 148 (353)
T cd09236 78 ASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDS--HEAN-------PKLYTQAAEYEGYLKQAGA 148 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCc--HHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 5666777777888999999999999999999999997764 322221 1111 1344444556667778888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHH---HHHHHHHHHhhhhcccC
Q 019366 140 KEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK---DKKVKELEENIAAVSFT 216 (342)
Q Consensus 140 REnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~---~~klk~aq~eL~A~kFt 216 (342)
=-..+..++..-+--|.-|.....++.... |++. .....|.+...+.+||..+.+. +.+=...-.+|.. +=.
T Consensus 149 sD~~v~~k~~~~~~~l~lL~~~~~~l~~~~-Ps~~---~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~-k~~ 223 (353)
T cd09236 149 SDELVRRKLDEWEDLIQILTGDERDLENFV-PSSR---RPSIPPELERHVRALRVSLEELDRLESRRRRKVERART-KAR 223 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHhC-CCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 888888888888777777766666665553 5432 2234678888888888655443 3333333333311 111
Q ss_pred CCchhhHHHHHHHHHHHHH---------------HHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 019366 217 ANSKMGKALMAKCKTLQEE---------------NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEAL 272 (342)
Q Consensus 217 PqS~~GKrLMAKCR~LqeE---------------NEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL 272 (342)
.+... -.||.-...+... -+||++ =..-...++..+..|...+.+++..+..+
T Consensus 224 ~DDI~-~~ll~~~~~~~~~~~~~~i~~~~fe~lf~~eL~k--f~~~~~~l~~~~~~Q~~ll~~i~~~n~~f 291 (353)
T cd09236 224 ADDIR-PEILREAARLEREYPATEVAPAHFEDLFDKRLAK--YDKDLDAVSEEAQEQEEILQQIEVANKAF 291 (353)
T ss_pred hcCch-HHHHHHHHhhhcccccccccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 2344332222111 024544 22234566666777777777777766555
No 198
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=76.54 E-value=82 Score=31.09 Aligned_cols=195 Identities=17% Similarity=0.244 Sum_probs=116.2
Q ss_pred chhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC-cCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHH
Q 019366 59 VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN-ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKA 137 (342)
Q Consensus 59 ~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~-e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~ea 137 (342)
.-..+|-.|.+..+.|...|..|..-|..=..+..+-+..|.. |.-- |.-.+. ..|+.-=.+++..|..|
T Consensus 73 ~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~-----pS~~~~----~~l~~~~~kyr~~L~~A 143 (339)
T cd09235 73 TIDQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKERWTRT-----PSNKLT----KPLRAEGSKYRTILDNA 143 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCC-----ChHHHh----HHHHHHHHHHHHHHHHH
Confidence 3456777888888999999999999999999999999997765 2211 111111 23555556677778888
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHH---HHHHHHHHHHHHHhhhhcc
Q 019366 138 KKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNL---VEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 138 krREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~e---Lee~~~klk~aq~eL~A~k 214 (342)
..=-..+..++..-+--|.-|.....+|.... |++.. ...|.+...+.+||.. |...+.+=.....+|...+
T Consensus 144 ~~sD~~v~~k~~~~~~~l~lLs~~~~~l~~~l-Pss~~----~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~Lk~~~ 218 (339)
T cd09235 144 VQADKIVREKYESHREGIELLSKPEEELANAI-PSASP----AKTLQGSEAVQELRQLMEQVETIKAEREVIESELKSAT 218 (339)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhC-CCCCC----CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888888777776666655555554443 43311 1234555566666644 4444455555555665543
Q ss_pred cCCCchhhHHHHHHH--HH-HHHH---HHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 019366 215 FTANSKMGKALMAKC--KT-LQEE---NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEAL 272 (342)
Q Consensus 215 FtPqS~~GKrLMAKC--R~-LqeE---NEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL 272 (342)
+....+ ||+-. +. ...| -+||++.-.. -...++..++.|...+.+++..+.++
T Consensus 219 ---dDI~~~-ll~~~~~~~~~~~e~l~~~eL~k~f~~-~~~~i~~~~~~Q~~ll~~i~~~n~~f 277 (339)
T cd09235 219 ---FDMKSK-FLSALAQDGAINEEAISVEELDRVYGP-LQKQVQESLSRQESLLANIQVAHQEF 277 (339)
T ss_pred ---cccHHH-HHHHHHhcCCccHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 33211 11 1111 2355552221 34566667777777777777777665
No 199
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.20 E-value=1.1e+02 Score=32.36 Aligned_cols=147 Identities=21% Similarity=0.241 Sum_probs=78.3
Q ss_pred ChhhhHHHHhhhHhhHHHHHHHHHHHHhHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHHhcC-CchHHHHHh
Q 019366 112 EPRLVINYLQTLKSSEEMLKEQLEKAKKKE-----------AAFIVTFAKREQEIAELKSAVRDLKAQLK-PPLMQARRL 179 (342)
Q Consensus 112 ~p~lv~~~l~~lk~sE~~LkeQl~eakrRE-----------nvll~rLA~KEQEiqel~s~l~dlk~~~~-pss~qlR~~ 179 (342)
....+.+.|..|.++|++-+..+.+.+.+= +.|=-.+...|+.|.++...+..+-..-. ..-..++.+
T Consensus 120 ~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~ 199 (569)
T PRK04778 120 DIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREI 199 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 445566677777777776665555554431 11112345667777777766655543321 122333433
Q ss_pred hhChhhHHHHHHHHHHHHHHHHHHHHHHH--------------hh--hhcccCCCchhhHHHHHHHHHHHHHHHHHhhhh
Q 019366 180 LLDPAIHEEFRRLKNLVEEKDKKVKELEE--------------NI--AAVSFTANSKMGKALMAKCKTLQEENDEIGRQN 243 (342)
Q Consensus 180 LlDPAVNlef~rLR~eLee~~~klk~aq~--------------eL--~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~l 243 (342)
+.. +......|...++..=.-+..++. +| ....|++.+ +-.....|+++..+.-..+
T Consensus 200 l~~--l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~-----i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 200 LDQ--LEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLD-----IEKEIQDLKEQIDENLALL 272 (569)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCC-----hHHHHHHHHHHHHHHHHHH
Confidence 322 122222333333322222222222 22 577888877 4557888888888877777
Q ss_pred hcccchhhhHHHHHHHHHHHHH
Q 019366 244 EEGETHQLSVKLALQKSLNAEL 265 (342)
Q Consensus 244 seGria~Le~eLAlqK~~~eEL 265 (342)
..+++...+..+......++.|
T Consensus 273 ~~l~l~~~~~~~~~i~~~Id~L 294 (569)
T PRK04778 273 EELDLDEAEEKNEEIQERIDQL 294 (569)
T ss_pred HhcChHHHHHHHHHHHHHHHHH
Confidence 7777766666655555555444
No 200
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=75.93 E-value=59 Score=29.12 Aligned_cols=95 Identities=20% Similarity=0.280 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 019366 192 LKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEA 271 (342)
Q Consensus 192 LR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~e 271 (342)
|+..+...+.+++..+.++..+-....+.- +=|.+|+.+.+.|.. ....|+.+|...++-.+.|-+..++
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k-----~eie~L~~el~~lt~-----el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSK-----AEIETLEEELEELTS-----ELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444444321 256778887777766 4578999999999988888888888
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHHHH
Q 019366 272 LYKHMDGLTDDVERSNEMVLMLREK 296 (342)
Q Consensus 272 L~~~l~eLdeEvE~lqstl~~LQqe 296 (342)
...-|.+|+.-..-....|..+-++
T Consensus 92 ~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 92 KQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8877777776665555555444444
No 201
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=75.93 E-value=69 Score=29.95 Aligned_cols=219 Identities=17% Similarity=0.245 Sum_probs=120.1
Q ss_pred HHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC-cCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHH
Q 019366 68 RESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN-ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIV 146 (342)
Q Consensus 68 r~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~-e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~ 146 (342)
.+.+..+...|......+..|..++..-+.-++. +.-+.-. ...-..+...|..+...-.....-+.....|....--
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~-eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~ee 92 (237)
T PF00261_consen 14 EERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERA-EERLEEATEKLEEAEKRADESERARKVLENREQSDEE 92 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445555666666666666666666555544443 2222110 0111122333333333333333455566667777778
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHH
Q 019366 147 TFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALM 226 (342)
Q Consensus 147 rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLM 226 (342)
+|..+|.++.+.+....+.=....-. .|.+- .|--.+.+....+.....++..+..+|..+.
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~E~---~rkl~---~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~------------ 154 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYEEV---ERKLK---VLEQELERAEERAEAAESKIKELEEELKSVG------------ 154 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHC---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHhhhchhHHHHHHHHHHHH------------
Confidence 89999999988888777653332111 12221 1334455666777777778888888776654
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHH
Q 019366 227 AKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEK 306 (342)
Q Consensus 227 AKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~ 306 (342)
..|+.|+.--+.... |...++..|..++....+.....+....-+..|...++.+...|..-+........+|..
T Consensus 155 ~~lk~lE~~~~~~~~-----re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 155 NNLKSLEASEEKASE-----REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544433332222 345555555566666666666666666666666666666666666666666666666644
Q ss_pred HHHH
Q 019366 307 LKHE 310 (342)
Q Consensus 307 lk~e 310 (342)
.-++
T Consensus 230 ~l~e 233 (237)
T PF00261_consen 230 TLNE 233 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 202
>PRK04406 hypothetical protein; Provisional
Probab=75.72 E-value=17 Score=29.17 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=25.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
.||..||+.+|.|...++ +|.++|.....+++.|+..+..|.++|.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe-------~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 11 ERINDLECQLAFQEQTIE-------ELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776654433 3455555555555555544444444443
No 203
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=75.42 E-value=84 Score=30.66 Aligned_cols=194 Identities=18% Similarity=0.240 Sum_probs=105.4
Q ss_pred HHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC-cCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHH
Q 019366 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN-ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKE 141 (342)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~-e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrRE 141 (342)
.+-.|.+..++|...|..|+..|..-..++.+-+..|.. +...|+ ...+ -..+++-=.+++..|..|..--
T Consensus 78 ~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~-----S~~~---~~~l~~~~~k~~~~L~~A~~sD 149 (342)
T cd08915 78 SFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPS-----SDEA---AKELYEKVTKLRGYLEQASNSD 149 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCC-----hHHH---HHHHHHHHHHHHHHHHHHHhhh
Confidence 444566777888888999999999889999999986665 222221 1111 1234444455666677777777
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHH---HHHHHHHHHhhhhcccCCC
Q 019366 142 AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK---DKKVKELEENIAAVSFTAN 218 (342)
Q Consensus 142 nvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~---~~klk~aq~eL~A~kFtPq 218 (342)
..+...+..-+--|.-|..-..++... -|+ .....+|.+...+..||..+.+. +.+=...-.+|.. +=..+
T Consensus 150 ~~l~~~~~~~~~~l~lL~~~~~~l~~~-~Ps----~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~-~~~~d 223 (342)
T cd08915 150 NEVLQCYESIDPNLVLLCGGYKELKAF-IPS----PYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEI-KSRNN 223 (342)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHh-CCC----ccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence 777666666555555554444444433 231 22234567777777777665443 3333333333311 11112
Q ss_pred chhhHHHHHHHHHHH----HHH--HHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 219 SKMGKALMAKCKTLQ----EEN--DEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALY 273 (342)
Q Consensus 219 S~~GKrLMAKCR~Lq----eEN--EELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~ 273 (342)
..+ ..||.--+... +.. +||++ =..-...++..+..|...+.+++..+.++.
T Consensus 224 dI~-~~ll~~~~~~~~~~~e~lf~~eL~k--f~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~ 281 (342)
T cd08915 224 DIL-PKLITEYKKNGTTEFEDLFEEHLKK--FDKDLTYVEKTKKKQIELIKEIDAANQEFS 281 (342)
T ss_pred CCc-HHHHHHhhccccchhHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 33443333221 110 24433 222345566666777777777776666653
No 204
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=75.38 E-value=75 Score=30.08 Aligned_cols=173 Identities=12% Similarity=0.216 Sum_probs=95.0
Q ss_pred hHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHH
Q 019366 123 LKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK 202 (342)
Q Consensus 123 lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~k 202 (342)
+++.-..++.+...+..++..+..++..+.+...++...+.++-... -.++-+. .-.+.....++....++
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i-------~~~i~e~--~~~~~~~~~~i~~~~~e 77 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTI-------AQMIEEK--QKQKELSEAEIQKLLKE 77 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHH--HhhHHhHHHHHHHHHhh
Confidence 45555666667666677778888888888888888887777763320 1111111 11144445667777777
Q ss_pred HHHHHHhhhhcccCCCchhhHHHHHHHHHHH------HHHHHHhhhhh---cccchhhhHHHHHHHHHHH-HHHHHHHHH
Q 019366 203 VKELEENIAAVSFTANSKMGKALMAKCKTLQ------EENDEIGRQNE---EGETHQLSVKLALQKSLNA-ELKSQFEAL 272 (342)
Q Consensus 203 lk~aq~eL~A~kFtPqS~~GKrLMAKCR~Lq------eENEELGr~ls---eGria~Le~eLAlqK~~~e-ELrk~~~eL 272 (342)
..++..+|+.+--++.. |..|-..+. ..|||.=+.-. ..+|...+-..-..|.+.+ .|.....++
T Consensus 78 rdq~~~dL~s~E~sfsd-----l~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei 152 (207)
T PF05010_consen 78 RDQAYADLNSLEKSFSD-----LHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEI 152 (207)
T ss_pred HHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888777654443 333333222 34544333211 1223333333333333332 222222222
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 273 YKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
..+ ....+..+..||..|++.+..+.-|+..|+++.-
T Consensus 153 ~~v-------~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~k 189 (207)
T PF05010_consen 153 AQV-------RSKHQAELLALQASLKKEEMKVQSLEESLEQKTK 189 (207)
T ss_pred HHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2333444667888888888888888888888765
No 205
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.38 E-value=14 Score=31.50 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
+..|...+..+..+++.+...|..|-+|...++-+...|...|.+..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444445555555555555555555555555555554444443
No 206
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.30 E-value=81 Score=30.41 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHH------------------HHHHhhhhhcccchhhh
Q 019366 191 RLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEE------------------NDEIGRQNEEGETHQLS 252 (342)
Q Consensus 191 rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeE------------------NEELGr~lseGria~Le 252 (342)
+|-+.|+.-=+||..+++.+..|--+++-+ -|.-+.-+|++.++ |+=|+.. -++.+.+
T Consensus 42 K~E~DLKkEIKKLQR~RdQIK~W~~~~diK-dk~~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~~~---~k~dp~e 117 (233)
T PF04065_consen 42 KLEADLKKEIKKLQRLRDQIKTWLSSNDIK-DKKKLLENRKLIEEQMERFKVVEKESKTKAFSKEGLMAA---SKLDPKE 117 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhcc---cccCcch
Confidence 444555555578888999999999888887 45556678888887 4444421 1333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH-------------HHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 253 VKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEM-------------VLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 253 ~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqst-------------l~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
. ........|.....+|...++.++.|+|.++.. +-.|+.-+..-+.-+.+|..-|....
T Consensus 118 ~---ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~ 190 (233)
T PF04065_consen 118 K---EKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLD 190 (233)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344566778888999999999999999976654 34555666666666666665555443
No 207
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=75.24 E-value=71 Score=29.75 Aligned_cols=169 Identities=17% Similarity=0.232 Sum_probs=96.0
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019366 133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (342)
Q Consensus 133 Ql~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A 212 (342)
+...++.|=.-|-.+|.+--+++.++...+..++....|+...+.. +-=+.+.-.+....+.|......+...+..|..
T Consensus 32 ~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~-~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~ 110 (240)
T PF12795_consen 32 EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILAN-LSLEELEQRLSQEQAQLQELQEQLQQENSQLIE 110 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777778899999999999999999998886651111111111 111223333344445555566666666666665
Q ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHh-------hhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHH-------Hhh
Q 019366 213 VSFTANSKMGKALMAKCKTLQEENDEIG-------RQNEEGETHQLSVKLALQKSLNAELKSQFEALYKH-------MDG 278 (342)
Q Consensus 213 ~kFtPqS~~GKrLMAKCR~LqeENEELG-------r~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~-------l~e 278 (342)
..=.|.. .-..|..--+.+++=+..|. ..++.-+...|.+++++.+..+.+++..+...... .+.
T Consensus 111 ~~~~p~~-aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl 189 (240)
T PF12795_consen 111 IQTRPER-AQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDL 189 (240)
T ss_pred HHccHHH-HHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence 5544443 22333333444444444444 34445566778888888888888887765432221 223
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhHHH
Q 019366 279 LTDDVERSNEMVLMLREKLEENDHE 303 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~~~~~ 303 (342)
+...+..++..|-.||..|..+...
T Consensus 190 ~~~~~~~l~~~l~~Lq~~ln~~R~~ 214 (240)
T PF12795_consen 190 LKARIQRLQQQLQALQNLLNQKRRQ 214 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554433
No 208
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=75.00 E-value=27 Score=36.08 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=64.8
Q ss_pred hhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCc-CCCCC---CCCCChhhhHHHHhhhHhhHHHHHHHHH
Q 019366 60 ATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNE-LFIPP---GTSPEPRLVINYLQTLKSSEEMLKEQLE 135 (342)
Q Consensus 60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e-~~i~a---~~~~~p~lv~~~l~~lk~sE~~LkeQl~ 135 (342)
...-|-.|+..|+...+.++.++.++.++++.+.-|.+.-..- ..+.. ....++ ..+.+.-.-+.+|+.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 141 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDL-------KEWFQAFDFNGSEIE 141 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCH-------HHHHHHHHHHHHHHH
Confidence 3346788999999999999999999999999998887732110 00110 011223 344555555666666
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019366 136 KAKKKEAAFIVTFAKREQEIAELKSAVRDL 165 (342)
Q Consensus 136 eakrREnvll~rLA~KEQEiqel~s~l~dl 165 (342)
+...+-.-+-..+...+++|..+..++..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 142 RLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666667777777777777776665
No 209
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=74.93 E-value=1.8e+02 Score=34.12 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 188 EFRRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 188 ef~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
+|.....--.....+++.+....-+|.
T Consensus 223 e~l~ea~ra~~yrdeldalre~aer~d 249 (1195)
T KOG4643|consen 223 EFLDEAHRADRYRDELDALREQAERPD 249 (1195)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhhhcCC
Confidence 333444444445566666666666765
No 210
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=74.76 E-value=15 Score=28.67 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=24.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
-||..||+.+|.+...+++ |.++|.....++++++..|..|.++|+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~-------Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEE-------LNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778877766544333 4444555555555544444444444443
No 211
>PRK10698 phage shock protein PspA; Provisional
Probab=74.72 E-value=76 Score=29.83 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=22.7
Q ss_pred CCchHHHHHhhhChh--hHHHHHHHHHHHHHHHHH
Q 019366 170 KPPLMQARRLLLDPA--IHEEFRRLKNLVEEKDKK 202 (342)
Q Consensus 170 ~pss~qlR~~LlDPA--VNlef~rLR~eLee~~~k 202 (342)
....+.+-.-..||. ++.++..|+..+.+.+.-
T Consensus 12 ~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~a 46 (222)
T PRK10698 12 NANINALLEKAEDPQKLVRLMIQEMEDTLVEVRST 46 (222)
T ss_pred HhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778996 777888887777776443
No 212
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=74.48 E-value=90 Score=30.53 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=63.4
Q ss_pred hhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhH--H-HHHHHH
Q 019366 71 LQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK--E-AAFIVT 147 (342)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrR--E-nvll~r 147 (342)
++-.+..+..++.+|+.|...+..|++. ...+-. ........+.+..|+.-...++.|+.+.+.+ + |=-
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~---~~~~d~--~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~--- 243 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIK---NKVFDP--KAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ--- 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc---
Confidence 3445566777888888888888888882 112210 0112234455556655555555555544322 1 110
Q ss_pred HHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 148 FAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 148 LA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL 210 (342)
+-....++..+..++.........+. ...+ |.....|.+|..+++-.++.++.+-..+
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i~~~~---~~~l--~~~~~~~~~L~re~~~a~~~y~~~l~r~ 301 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQLSGGL---GDSL--NEQTADYQRLVLQNELAQQQLKAALTSL 301 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCC---CccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122333333333333222211110 1112 4445578888888887777776555554
No 213
>PRK02119 hypothetical protein; Provisional
Probab=74.10 E-value=21 Score=28.44 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=26.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
.||..||+.+|.|...++ +|.++|.....++++|+..+..|.++|+.
T Consensus 9 ~Ri~~LE~rla~QE~tie-------~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLE-------ELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477888888777654443 34555555555555555555555444433
No 214
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=73.97 E-value=43 Score=32.13 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHH
Q 019366 250 QLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 250 ~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL 297 (342)
.|+.++..-.+..+...+....|.+..++++.|-+|+-+.-.-||.++
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 334444333333444444444444444444444444444433444444
No 215
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=73.87 E-value=30 Score=30.36 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=51.3
Q ss_pred HhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhH
Q 019366 208 ENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSN 287 (342)
Q Consensus 208 ~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lq 287 (342)
-.|...+|.|.+...--.+.++ ..+.+.||..|+--...++.|+..+......++..++.+..|+
T Consensus 4 ~~l~~~~~Pp~~~~~~~~~e~l---------------l~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le 68 (160)
T PF13094_consen 4 RRLARLPFPPQKREDSFDYEQL---------------LDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELE 68 (160)
T ss_pred hhCCCCCCCcccccccccHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999882221111111 1234677777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhHHH
Q 019366 288 EMVLMLREKLEENDHE 303 (342)
Q Consensus 288 stl~~LQqeL~~~~~~ 303 (342)
.++..+..++++....
T Consensus 69 ~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 69 KNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777676666554443
No 216
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=73.32 E-value=43 Score=26.53 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=28.3
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 273 YKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
..++..|+++.+.+...|..|..++..+..++..++..|..
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777766653
No 217
>PRK04325 hypothetical protein; Provisional
Probab=73.21 E-value=23 Score=28.21 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=28.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
||..||+.+|.|...+ ++|.++|.+...++++|+..+..|-.+|+.
T Consensus 10 Ri~~LE~klAfQE~tI-------e~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 10 RITELEIQLAFQEDLI-------DGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777665444 445666666666666666666666555544
No 218
>PF15294 Leu_zip: Leucine zipper
Probab=73.02 E-value=1e+02 Score=30.61 Aligned_cols=110 Identities=24% Similarity=0.345 Sum_probs=71.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhh-----------hhhcccchh
Q 019366 182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGR-----------QNEEGETHQ 250 (342)
Q Consensus 182 DPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr-----------~lseGria~ 250 (342)
.|.+|-+|.||+.+.+..+.++..++.... ..|=.| .+|+....+|.. ...+..+..
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at-----------~~l~Ek-~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~d 194 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQAT-----------SALDEK-SKLEAQLKELQDEQGDQKGKKDLSFKAQDLSD 194 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH-HHHHHHHHHHHHHHHhhhccccccccccchhh
Confidence 366999999999999999988888765532 222122 233444444433 233445666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHH
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEK 306 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~ 306 (342)
||..+|..| .+|.+...+.......|.+++----..|+-.|.+|..+..+++.
T Consensus 195 LE~k~a~lK---~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLek 247 (278)
T PF15294_consen 195 LENKMAALK---SELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEK 247 (278)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHH
Confidence 788888887 45556667777777777777666666677777777777666663
No 219
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.90 E-value=89 Score=29.81 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=15.9
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 273 YKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
..-....+.+++.++..+..-+..+..+...+
T Consensus 95 ~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 95 EEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555544444
No 220
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=72.62 E-value=52 Score=27.01 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=21.5
Q ss_pred HHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 274 KHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 274 ~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
+.+..+++.++.+...|..+..++..+..++..++..|..
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555543
No 221
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.58 E-value=66 Score=29.69 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019366 187 EEFRRLKNLVEEKDKKVKELEENIAA 212 (342)
Q Consensus 187 lef~rLR~eLee~~~klk~aq~eL~A 212 (342)
-++++|-++|..+++++..+...+++
T Consensus 16 ~Lv~~LQ~KV~qYr~rc~ele~~l~~ 41 (182)
T PF15035_consen 16 QLVQRLQAKVLQYRKRCAELEQQLSA 41 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46799999999999999999999854
No 222
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=72.16 E-value=17 Score=28.79 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019366 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGL 279 (342)
Q Consensus 224 rLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eL 279 (342)
.|+.+|..|..||.-|-. .++.+..+=+...+.++--+..++.|-.-+..|
T Consensus 11 ~Li~~~~~L~~EN~~Lr~-----q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRA-----QEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 478888888888887766 345566666666666666555555554444433
No 223
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.06 E-value=2e+02 Score=33.59 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=15.2
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019366 136 KAKKKEAAFIVTFAKREQEIAELKSAVRDL 165 (342)
Q Consensus 136 eakrREnvll~rLA~KEQEiqel~s~l~dl 165 (342)
..+.||.-.+-...+++-++-++..++..=
T Consensus 290 q~~a~~t~~~k~kt~lel~~kdlq~~i~~n 319 (1200)
T KOG0964|consen 290 QLKARETKISKKKTKLELKIKDLQDQITGN 319 (1200)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Confidence 334444444555555555555555555443
No 224
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.86 E-value=21 Score=31.45 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=13.6
Q ss_pred HHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHH
Q 019366 162 VRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLV 196 (342)
Q Consensus 162 l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eL 196 (342)
+..|+.+-.|-+ ++-+|..|++.+
T Consensus 7 l~y~~~qNRPys-----------~~di~~nL~~~~ 30 (169)
T PF07106_consen 7 LEYMKEQNRPYS-----------AQDIFDNLHNKV 30 (169)
T ss_pred HHHHHHcCCCCc-----------HHHHHHHHHhhc
Confidence 455666666654 345556665543
No 225
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=71.86 E-value=38 Score=26.84 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=55.6
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHH--HHH------HHHHHHHHhHHHHHHHHHHHhh
Q 019366 242 QNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNE--MVL------MLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 242 ~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqs--tl~------~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
.+++|=..-|...|...+..+.+++.+|..|...|..+..+....++ .+. .-...|...+.++..+...++.
T Consensus 3 ~La~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~ 82 (92)
T PF14712_consen 3 ALAEGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQK 82 (92)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999999999999999998877776 111 2455666666666666655544
No 226
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.79 E-value=22 Score=27.76 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=38.6
Q ss_pred hhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH
Q 019366 115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKS 160 (342)
Q Consensus 115 lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s 160 (342)
.+.+.|+.++++--.+..+|.++..|-.-|...|..++.++-++++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678889999999999999999999988888888888888877654
No 227
>PRK14127 cell division protein GpsB; Provisional
Probab=71.72 E-value=13 Score=31.99 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
..+.+.||.++-.|.+.+...+..|+.++..++.++..++..+..
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467889999999999999999999999999999999998887664
No 228
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.67 E-value=24 Score=27.95 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=26.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 245 EGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 245 eGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
+.||..||+.+|.|...+++ |.++|.+...++++++..+..|.++|.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~-------Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 7 EARLAELESRLAFQEITIEE-------LNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888777554433 445555555555554444444444443
No 229
>PRK00295 hypothetical protein; Provisional
Probab=71.59 E-value=28 Score=27.32 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=26.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
.||..||+.+|.|...+++ |.++|.....+++.|+..+..|.++|+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~-------Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQA-------LNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888887776554433 4555555555555555555555444444
No 230
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=71.51 E-value=1.4e+02 Score=31.55 Aligned_cols=43 Identities=30% Similarity=0.477 Sum_probs=23.6
Q ss_pred hHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019366 116 VINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDL 165 (342)
Q Consensus 116 v~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dl 165 (342)
+..+|+..+...+-.++++.++++ -+++..|++..+..+-+++
T Consensus 107 ~~~El~~~r~e~~~v~~~~~~a~~-------n~~kAqQ~lar~t~Q~q~l 149 (499)
T COG4372 107 ARSELQKARQEREAVRQELAAARQ-------NLAKAQQELARLTKQAQDL 149 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655443 2444555555555555554
No 231
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=70.88 E-value=44 Score=29.47 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=36.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
+||..|...+-.+.+.++..+....++..-+.....|++..+.+|..|...|..
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777667777777777777777776777777777766666666665544
No 232
>PF14992 TMCO5: TMCO5 family
Probab=70.43 E-value=1.1e+02 Score=30.58 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=85.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHH---H----HHHHHhhh--h
Q 019366 142 AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK---V----KELEENIA--A 212 (342)
Q Consensus 142 nvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~k---l----k~aq~eL~--A 212 (342)
+.|+..|-.+|-.||.+.+.|.-+.-... .+.-...+..+|--.+ ..|.-+....+++ + .++|.++. -
T Consensus 21 q~lL~ki~~~E~~iq~Le~Eit~~~~~~~-~~e~e~~~~~~~e~~l--~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 21 QSLLQKIQEKEGAIQSLEREITKMDHIAD-RSEEEDIISEERETDL--QELELETAKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccC-chhHHhhhhhchHHHH--HHHHhhhHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 68899999999999999998876533222 2233444444544332 2222111111111 1 22333321 1
Q ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHH
Q 019366 213 VSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLM 292 (342)
Q Consensus 213 ~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~ 292 (342)
+++.++-+.-+ ..| +-|..++++++...+.|.+++..+...+...+....+.=..+..+++.|
T Consensus 98 ~~~~~e~~~~~------~~l---------q~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L-- 160 (280)
T PF14992_consen 98 TNVQCEDPQLS------QSL---------QFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL-- 160 (280)
T ss_pred CCCCCCccchh------ccc---------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 12211111100 011 2355788899999999999999988888888888877777777777755
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 293 LREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 293 LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
++++. ..++.-|..++++...
T Consensus 161 --~rmE~-ekE~~lLe~el~k~q~ 181 (280)
T PF14992_consen 161 --RRMEE-EKEMLLLEKELSKYQM 181 (280)
T ss_pred --HHHHH-HHHHHHHHHHHHHHhc
Confidence 34444 5555555555554433
No 233
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=70.41 E-value=68 Score=27.37 Aligned_cols=22 Identities=9% Similarity=0.315 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 019366 191 RLKNLVEEKDKKVKELEENIAA 212 (342)
Q Consensus 191 rLR~eLee~~~klk~aq~eL~A 212 (342)
.|...++..+..+..++..+..
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~~ 31 (140)
T PRK03947 10 ELAAQLQALQAQIEALQQQLEE 31 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 234
>PF14282 FlxA: FlxA-like protein
Probab=70.35 E-value=52 Score=27.61 Aligned_cols=63 Identities=10% Similarity=0.169 Sum_probs=36.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
.|+.|...|..+...+.+|... .++ =-++-..-+.-+|..|.+|+.+|.....+.......-.
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~-~~~--~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~~ 82 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQD-SDL--DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQKQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666666666666655552 011 11223456667778888888888877777665544433
No 235
>PF13166 AAA_13: AAA domain
Probab=70.13 E-value=1.5e+02 Score=31.33 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 265 LKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 265 Lrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
++..+..+.+.+..+...+..+...+..++.++.....++..|+..+..
T Consensus 408 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 456 (712)
T PF13166_consen 408 LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKN 456 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333344445555566666666666677777777777777666653
No 236
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=69.54 E-value=40 Score=35.74 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHhhHHHHHHHHHHHHHhH
Q 019366 223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDG-LTDDVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~e-LdeEvE~lqstl~~LQqeL~~~~ 301 (342)
+-|+++.|.+..+. +.|..+=..+++.|+.||++...++.-|.. ++.+..+++...-+|++++.++.
T Consensus 62 rTlva~~k~~r~~~------------~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~ 129 (472)
T TIGR03752 62 RTLVAEVKELRKRL------------AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQ 129 (472)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34555555555443 444444456778888888877777766654 44556677777777888888888
Q ss_pred HHHHHHHHHHh
Q 019366 302 HELEKLKHELR 312 (342)
Q Consensus 302 ~~l~~lk~eL~ 312 (342)
..+..|+..|.
T Consensus 130 ~~l~~l~~~l~ 140 (472)
T TIGR03752 130 GLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHh
Confidence 88887777763
No 237
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=69.53 E-value=2e+02 Score=32.54 Aligned_cols=58 Identities=28% Similarity=0.226 Sum_probs=32.4
Q ss_pred hhhhHHHHhhhHhhHHHHHHHHHHHHhHHH-HHHHHHHhHHHHHHHHHHHHHHHHHhcCCch
Q 019366 113 PRLVINYLQTLKSSEEMLKEQLEKAKKKEA-AFIVTFAKREQEIAELKSAVRDLKAQLKPPL 173 (342)
Q Consensus 113 p~lv~~~l~~lk~sE~~LkeQl~eakrREn-vll~rLA~KEQEiqel~s~l~dlk~~~~pss 173 (342)
|..+.-.|..++.-=.-|.+-| .+||+ ++-.-+++..-|-..+..-..++|.....+.
T Consensus 341 ~d~~q~eLdK~~~~i~~Ln~~l---eaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~ 399 (961)
T KOG4673|consen 341 SDDVQLELDKTKKEIKMLNNAL---EAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESE 399 (961)
T ss_pred chhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccc
Confidence 3334445544444434444433 37774 4444566666666667777777777655543
No 238
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.44 E-value=2.2e+02 Score=32.80 Aligned_cols=65 Identities=28% Similarity=0.327 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhh--hhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH
Q 019366 225 LMAKCKTLQEENDEIGR--QNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEM 289 (342)
Q Consensus 225 LMAKCR~LqeENEELGr--~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqst 289 (342)
|=+|-+.|+.|.+-|-- +-.+||++.....+..+|..++++.++.+-+---+.+|-..+..+|++
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667666665532 234566666666666666666666655443333333333333333333
No 239
>PRK11519 tyrosine kinase; Provisional
Probab=69.36 E-value=1.3e+02 Score=32.70 Aligned_cols=123 Identities=19% Similarity=0.214 Sum_probs=60.0
Q ss_pred HhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHH
Q 019366 69 ESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTF 148 (342)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rL 148 (342)
.+++-.+..|..++.+|+.|...++.+++.- ..+.. +.+-....+.+ ..++.|+.+.+.++.-+..++
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~---~~vd~--~~ea~~~l~~~-------~~l~~ql~~l~~~~~~l~~~y 334 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDK---DSVDL--PLEAKAVLDSM-------VNIDAQLNELTFKEAEISKLY 334 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCc--hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 4555567778889999999999999999832 22211 11222232333 234455555555554443333
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKEL 206 (342)
Q Consensus 149 A~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~a 206 (342)
...-=.++.+..+.+.++....- .-.++.-=|..-.+|.+|..+.+-.+.-+..+
T Consensus 335 ~~~hP~v~~l~~~~~~L~~~~~~---l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~l 389 (719)
T PRK11519 335 TKEHPAYRTLLEKRKALEDEKAK---LNGRVTAMPKTQQEIVRLTRDVESGQQVYMQL 389 (719)
T ss_pred cccCcHHHHHHHHHHHHHHHHHH---HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222222222222111000 00112223555567777777776666655443
No 240
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.15 E-value=21 Score=34.12 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=57.4
Q ss_pred HhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 239 IGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 239 LGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
+|---.+.|+.+||..+.......-+|-.+++.|..=|..|.=.+|.++-.|-+++++-++.+..|.++-..+
T Consensus 33 ~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 33 VGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred cCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333446788899988888887778888888888888888888888888888888888888888888764433
No 241
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=69.00 E-value=1.8e+02 Score=31.68 Aligned_cols=112 Identities=13% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCCCChhhhHHHHhhhHh--hHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc--hHHHHHhhhCh
Q 019366 108 GTSPEPRLVINYLQTLKS--SEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP--LMQARRLLLDP 183 (342)
Q Consensus 108 ~~~~~p~lv~~~l~~lk~--sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~ps--s~qlR~~LlDP 183 (342)
-.+++|.....-+..+-+ .+..+.....++.+-=..+-.||....+++.....++.++|..+.-. ..+.. ++++
T Consensus 234 ~~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~-~~l~- 311 (726)
T PRK09841 234 MTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAK-AVLE- 311 (726)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHH-HHHH-
Confidence 356788877665554432 13344444445555557788899999999999999999999886321 11111 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHH
Q 019366 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCK 230 (342)
Q Consensus 184 AVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR 230 (342)
.+..|+..+...+.+. .+|.+ .|+|+++.=+.|-++..
T Consensus 312 ----~~~~l~~ql~~l~~~~----~~l~~-~~~~~hP~v~~l~~~~~ 349 (726)
T PRK09841 312 ----QIVNVDNQLNELTFRE----AEISQ-LYKKDHPTYRALLEKRQ 349 (726)
T ss_pred ----HHHHHHHHHHHHHHHH----HHHHH-HhcccCchHHHHHHHHH
Confidence 2234444444433333 23322 58999986655555433
No 242
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=68.27 E-value=1.3e+02 Score=29.85 Aligned_cols=102 Identities=23% Similarity=0.274 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc--ccCCCch--hhHHHHHHHHHHHHHHH------------------HHhhhhhcccch
Q 019366 192 LKNLVEEKDKKVKELEENIAAV--SFTANSK--MGKALMAKCKTLQEEND------------------EIGRQNEEGETH 249 (342)
Q Consensus 192 LR~eLee~~~klk~aq~eL~A~--kFtPqS~--~GKrLMAKCR~LqeENE------------------ELGr~lseGria 249 (342)
|.++-++.=+.+++.|+.|+-+ .+.|+|. .+ -||.+.+.|+.|.. .||+.--.--++
T Consensus 21 l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~-ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl~~ 99 (268)
T PF11802_consen 21 LIKECEELWKDMEECQNKLSLIGTETLTDSDAQLS-LLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKLIS 99 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHH-HHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 3344444455555666666544 4445552 23 45555555555532 356655555678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHH
Q 019366 250 QLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLR 294 (342)
Q Consensus 250 ~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQ 294 (342)
.|++-|...++.++.|+...+.-..++.+...=.+-|+.....|.
T Consensus 100 eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk 144 (268)
T PF11802_consen 100 ELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELK 144 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877666555555554444444444333333
No 243
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=68.23 E-value=1.3e+02 Score=29.78 Aligned_cols=175 Identities=18% Similarity=0.291 Sum_probs=96.8
Q ss_pred CCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc---hHHHHHhh
Q 019366 104 FIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP---LMQARRLL 180 (342)
Q Consensus 104 ~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~ps---s~qlR~~L 180 (342)
++..+.++...+. .+-..| -++|+.-+.....||-.|-..+-.++-|++=+.+-+...+....-. ...+...+
T Consensus 122 ~~ee~~~~~~k~~-~eN~~L---~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~ 197 (309)
T PF09728_consen 122 QMEEQSERNIKLR-EENEEL---REKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEIL 197 (309)
T ss_pred HHHhccchhHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444555555433 222333 3455554555568898888888888888887777666655543332 23334444
Q ss_pred hChhhH-----HHHHHHHHHHHHHHHHHHHHHHhhhh--cccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhH
Q 019366 181 LDPAIH-----EEFRRLKNLVEEKDKKVKELEENIAA--VSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSV 253 (342)
Q Consensus 181 lDPAVN-----lef~rLR~eLee~~~klk~aq~eL~A--~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~ 253 (342)
++-+.. ..-..||..|.-+..+.++.++-|+- -.|+ +...|-+.+.+ +|..||.
T Consensus 198 l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~--------------tfk~Emekm~K-----k~kklEK 258 (309)
T PF09728_consen 198 LEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFE--------------TFKKEMEKMSK-----KIKKLEK 258 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHHHHHHHH-----HHHHHHH
Confidence 444441 12345677777777777777776632 1121 23334444444 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 254 KLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 254 eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
+ +..+++.++..+..|.++-++...+...+..++-++.+...-...||
T Consensus 259 E-------~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 259 E-------NQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred H-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 45556666677777777777776655555555555555444444443
No 244
>PRK00846 hypothetical protein; Provisional
Probab=68.13 E-value=31 Score=28.16 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=28.5
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHh
Q 019366 244 EEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEN 300 (342)
Q Consensus 244 seGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~ 300 (342)
.+.||..||+.+|.|...+++ |.+.|......+++|+..|..|-.+|+..
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~-------LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTE-------LSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788888888777554443 44455555555555555555555444443
No 245
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=67.92 E-value=2e+02 Score=31.76 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=34.6
Q ss_pred chhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHH
Q 019366 59 VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHS 97 (342)
Q Consensus 59 ~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~ 97 (342)
+..++.-.+|.-+..|..++..+...+....-.+.+|..
T Consensus 97 ~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~ 135 (670)
T KOG0239|consen 97 VVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEE 135 (670)
T ss_pred hHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhc
Confidence 457788889999999999999999999999999988876
No 246
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=67.88 E-value=78 Score=27.14 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~ 269 (342)
..++..++.-...+..++..... +=..=-..+..+..|..+..++.. .|..|..++...+......+.+.
T Consensus 27 ~~~~~dl~~q~~~a~~Aq~~YE~-----El~~Ha~~~~~L~~lr~e~~~~~~-----~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 27 QSLREDLESQAKIAQEAQQKYER-----ELVKHAEDIKELQQLREELQELQQ-----EINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhH
Confidence 45566666666666666655310 111111235567777777777776 34566666666666665555553
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 270 EALYKHMDGLTDDVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 270 ~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
.+-. ..|..+++.+...+--|..|..-++.+|+
T Consensus 97 ~~qk---~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 97 EEQK---EQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3322 23444555555555555555555555544
No 247
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.78 E-value=25 Score=30.99 Aligned_cols=55 Identities=27% Similarity=0.433 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhh
Q 019366 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGR 241 (342)
Q Consensus 184 AVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr 241 (342)
++...+..|+.++...+..++.++.+|+...=+|- ---|......|..|+++|..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t---~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPT---NEELREEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888888888888888888874443 34466666666666666655
No 248
>PLN02939 transferase, transferring glycosyl groups
Probab=67.76 E-value=2e+02 Score=33.25 Aligned_cols=184 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHhhhHhhHHHHHHHHHHHHhH--HHHHHHHHHhHHHHHHHHHH-HHHHHHHhcCCchHHHHHhhhChhhHHHHHHHH
Q 019366 117 INYLQTLKSSEEMLKEQLEKAKKK--EAAFIVTFAKREQEIAELKS-AVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLK 193 (342)
Q Consensus 117 ~~~l~~lk~sE~~LkeQl~eakrR--Envll~rLA~KEQEiqel~s-~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR 193 (342)
.++|+.+-...+.|+.++....-| |.--...+|+.++.-.++.- ++..+|.........-+. .+.....+|.-||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 232 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGL--CVHSLSKELDVLK 232 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhcccccccc--ccccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCc----------------------hhhHHHHHHHHHHHHHH-----HHHhhhhhcc
Q 019366 194 NLVEEKDKKVKELEENIAAVSFTANS----------------------KMGKALMAKCKTLQEEN-----DEIGRQNEEG 246 (342)
Q Consensus 194 ~eLee~~~klk~aq~eL~A~kFtPqS----------------------~~GKrLMAKCR~LqeEN-----EELGr~lseG 246 (342)
.|---.+..+.-++.+|..++=|-.. ...+.=|+|...|+.|- |.|.-.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 310 (977)
T PLN02939 233 EENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD-- 310 (977)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHH--
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLT------DDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLd------eEvE~lqstl~~LQqeL~~~~~~l 304 (342)
+.+.=.-..++.-.++.+|++....|+.-+.+.+ +-+|-||..|..+.+.|+..+.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (977)
T PLN02939 311 RATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEI 374 (977)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
No 249
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.64 E-value=38 Score=33.28 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHH----HHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 198 EKDKKVKELEENIAAVSFTANSKMGKALMAKCKT----LQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALY 273 (342)
Q Consensus 198 e~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~----LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~ 273 (342)
.++-+....+.-|...+--|.-.-=|.+..-||- ++.||++|-+ .+++|...|+++.
T Consensus 109 rkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~-------------------eleele~e~ee~~ 169 (290)
T COG4026 109 RKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLK-------------------ELEELEAEYEEVQ 169 (290)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH
Confidence 3444444455556666666665555555555554 3444444433 2334444455555
Q ss_pred HHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 274 KHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 274 ~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
+-+..+.-+..++.+++..|--+..+.+.....|..
T Consensus 170 erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 170 ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 555555555555555554444444444444444443
No 250
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.40 E-value=1.2e+02 Score=29.08 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=45.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHH-Hhhh
Q 019366 258 QKSLNAELKS---QFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHE-LRQK 314 (342)
Q Consensus 258 qK~~~eELrk---~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~e-L~~~ 314 (342)
-..++++||- -+..|+.+|.++..+.++....+..++.++...+.++.++-.+ +..-
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4566677744 4556788899999999999999999999999999999988877 4433
No 251
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=67.27 E-value=1.8e+02 Score=30.93 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHH-Hhhh
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDE-IGRQ 242 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEE-LGr~ 242 (342)
.+|+..+.....+..++++++.... +.=..|+++||.|+.+.|. |.++
T Consensus 449 ~k~~~~~~~l~~kr~e~~~e~~~l~-----pkL~~l~~~Tr~Lq~~iE~~ISk~ 497 (507)
T PF05600_consen 449 EKLRRKREDLEEKRQEAQEEQQELE-----PKLDALVERTRELQKQIEADISKR 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677777777777776654 2334588999999988876 6665
No 252
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.63 E-value=64 Score=25.64 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 254 KLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 254 eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
.|+.+.+--+-|.+..-.+...|..|...+..+..++..|..++.....+++.|+..+
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444444444444444444444444445555555555555554443
No 253
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=66.45 E-value=1.1e+02 Score=28.33 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=19.0
Q ss_pred hHHHHHhhhChh--hHHHHHHHHHHHHHHHHHHH
Q 019366 173 LMQARRLLLDPA--IHEEFRRLKNLVEEKDKKVK 204 (342)
Q Consensus 173 s~qlR~~LlDPA--VNlef~rLR~eLee~~~klk 204 (342)
.+.+-.-+.||. ++..+..|+..|.+.+.-+.
T Consensus 15 ~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA 48 (219)
T TIGR02977 15 LNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSA 48 (219)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677886 56666666666555544433
No 254
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.41 E-value=2.3e+02 Score=32.04 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=36.9
Q ss_pred HHhhHHhhhhchhhhHhhHHHHHHHHHHH----HHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHH
Q 019366 64 ILSLRESLQNCKDTLATCQLELEAAKSEI----QKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQL 134 (342)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~e~----~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl 134 (342)
+-.++..+..+...+..++..+.....+| .+|+....... + ...++..+...++.-...+..+..++
T Consensus 544 ~~~l~~ql~~l~~q~~~lq~ql~ql~~ql~~l~q~wqe~~~~l~-~---~~~~~~~l~~~lq~~~q~~~~l~~~~ 614 (1042)
T TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP-N---LQNITVRLQDLTEKLSEAEDMLACEQ 614 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-c---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666667777777777776 34655322221 1 11466666666665555555544443
No 255
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.15 E-value=11 Score=29.16 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=17.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHM 276 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l 276 (342)
++..+++.++..++.+++++.+.+++.+-+
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666555555544
No 256
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=65.90 E-value=47 Score=31.40 Aligned_cols=73 Identities=10% Similarity=0.234 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhh--hcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 232 LQEENDEIGRQN--EEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 232 LqeENEELGr~l--seGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
|+-+++-+-|++ ++.|...|..+|...+.+-..+-..+...-+-...|+.+-...|..|..||.++..++.+.
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444433 4567888999999999999888888888888888888888887777777777666655544
No 257
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=65.71 E-value=1.3e+02 Score=28.99 Aligned_cols=85 Identities=9% Similarity=0.110 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHHHhccC-cCCCCCCC-CCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 019366 80 TCQLELEAAKSEIQKWHSSFQN-ELFIPPGT-SPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAE 157 (342)
Q Consensus 80 ~~~~~l~~a~~e~~kW~~~f~~-e~~i~a~~-~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqe 157 (342)
.++.++..+...+.+++..... ...+.... ...|..+...- -......+..+......+-..+..+++.++.++..
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 155 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAE--DPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQ 155 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChHHhhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999998875433 12221111 12232221100 01122334444444555555556666666666666
Q ss_pred HHHHHHHHH
Q 019366 158 LKSAVRDLK 166 (342)
Q Consensus 158 l~s~l~dlk 166 (342)
+..++..++
T Consensus 156 ~~~~i~~~~ 164 (423)
T TIGR01843 156 LEAELAGLQ 164 (423)
T ss_pred HHHHHHHHH
Confidence 665555443
No 258
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.38 E-value=1.8e+02 Score=30.51 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=24.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVE 284 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE 284 (342)
.++|+.+++...+..++|+..-..|.+.|..++.++-
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 212 LAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777766664443
No 259
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=64.90 E-value=97 Score=30.55 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=63.4
Q ss_pred HHHHHHHhHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc-hHHHHHhh---hChh--------------hHHH
Q 019366 132 EQLEKAKKKE-----AAFIVTFAKREQEIAELKSAVRDLKAQLKPP-LMQARRLL---LDPA--------------IHEE 188 (342)
Q Consensus 132 eQl~eakrRE-----nvll~rLA~KEQEiqel~s~l~dlk~~~~ps-s~qlR~~L---lDPA--------------VNle 188 (342)
+.+.+++.|| ..+..||...+.-+.++............-- ...+..++ +||. |+.|
T Consensus 142 ~~l~~mR~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~qEval~adK~DI~EE 221 (291)
T TIGR00255 142 LDFINMREFEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQEAALLAQRIDIAEE 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchHHH
Confidence 3567888898 4566677777766666555333322221100 12222322 5664 7788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 019366 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE 245 (342)
Q Consensus 189 f~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lse 245 (342)
+.||++=+..+..-+.. +.+.||+|==-|.-+..|-.=||.-...
T Consensus 222 l~RL~sHl~~f~~~L~~------------~~~vGrkLDFL~QEmnRE~NTigSKs~d 266 (291)
T TIGR00255 222 IDRLDSHVKEFYNILKK------------GEAVGRKLDFMMQELNRESNTLASKAID 266 (291)
T ss_pred HHHHHHHHHHHHHHHhc------------CCCcCcchhHHHHHHhHHHHHHHHccCc
Confidence 88888888887775542 4578999988888888887777774443
No 260
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.73 E-value=56 Score=28.38 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=41.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
++++.|+..|...|.-.++|.++-++|...+..|....+-.+.-|.-||.+|..+...++..
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777777777777666666666666666666666665543
No 261
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=64.27 E-value=25 Score=26.44 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhH
Q 019366 266 KSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 266 rk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~ 301 (342)
+..+.+|...+..|..+.+.|...+..|..++....
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 262
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.15 E-value=84 Score=26.14 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCc
Q 019366 196 VEEKDKKVKELEENIAAVSFTANS 219 (342)
Q Consensus 196 Lee~~~klk~aq~eL~A~kFtPqS 219 (342)
++.-..+.+.+.++|..+. |+.
T Consensus 29 le~~~~E~~~v~~eL~~l~--~d~ 50 (110)
T TIGR02338 29 VEAQLKEAEKALEELERLP--DDT 50 (110)
T ss_pred HHHHHHHHHHHHHHHHcCC--Ccc
Confidence 3333444445555555554 444
No 263
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=64.13 E-value=1.1e+02 Score=27.69 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=41.9
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhH
Q 019366 214 SFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE-----------ALYKHMDGLTDD 282 (342)
Q Consensus 214 kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~-----------eL~~~l~eLdeE 282 (342)
.|+|++..| ||-+.=...+..+-+-. .+ +..+.++..++.-++.|..+++ ++..+=+....+
T Consensus 18 ~~G~e~v~~--LmP~VV~vLE~Le~~~~---~n--~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e 90 (158)
T PF09744_consen 18 RYGEEAVKG--LMPKVVRVLELLESLAS---RN--QEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQE 90 (158)
T ss_pred HhChhHHHH--HHHHHHHHHHHHHHHHH---hh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999888 88887665555444433 22 2333344455555554444332 222223344444
Q ss_pred HHhhHHHHHHHHHHHHHhH
Q 019366 283 VERSNEMVLMLREKLEEND 301 (342)
Q Consensus 283 vE~lqstl~~LQqeL~~~~ 301 (342)
...+.+.|..||.+.++..
T Consensus 91 ~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 91 RKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444
No 264
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=63.94 E-value=1.6e+02 Score=29.21 Aligned_cols=200 Identities=18% Similarity=0.223 Sum_probs=115.2
Q ss_pred CchhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHH
Q 019366 58 GVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKA 137 (342)
Q Consensus 58 ~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~ea 137 (342)
..-...+-.|.+-.++|...|..|+.-|..-.++..+-+..|.. .+-...+..-+ ..|+.-=.+++..|..|
T Consensus 75 ~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~-rWtr~pS~~~~-------~~l~~~i~~~r~~L~~A 146 (339)
T cd09238 75 AALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGT-AWTRPPSATLT-------KNLWERLNRFRVNLEQA 146 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCccHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33456777888888999999999999999999999999997766 22211111111 13444555666677777
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHh-hhChhhHHHHHHHHHHH---HHHHHHHHHHHHhhhhc
Q 019366 138 KKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRL-LLDPAIHEEFRRLKNLV---EEKDKKVKELEENIAAV 213 (342)
Q Consensus 138 krREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~-LlDPAVNlef~rLR~eL---ee~~~klk~aq~eL~A~ 213 (342)
..--..+..++..-+.-+.-|-. +.+... -|++.. .. .++|..+.++.+||..+ ...+.+=...-..|...
T Consensus 147 ~~sD~~v~~k~~~~~~~l~~L~~--~~~~~~-~Ps~~~--~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~ 221 (339)
T cd09238 147 GDSDESLRRRIEDAMDGMLILDD--EPAAAA-APTLRA--PMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKAL 221 (339)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCc--HhhHhh-CCCCCC--cccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666622 233322 444211 11 22344555556665544 33333333333344222
Q ss_pred ccCCCchhhHHHHHHHHHHHH-HHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019366 214 SFTANSKMGKALMAKCKTLQE-ENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYK 274 (342)
Q Consensus 214 kFtPqS~~GKrLMAKCR~Lqe-ENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~ 274 (342)
+- .+...++ ||..-..+.. =++||++ =..-...++..+..|...+.+++..+..+..
T Consensus 222 ~~-~DDI~~~-ll~~~~~~e~lF~~eL~k--f~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~ 279 (339)
T cd09238 222 KR-NDNILAK-VMATTGSYDALFKEELKK--YDSVREAVSKNISSQDDLLSRLRALNEKFSQ 279 (339)
T ss_pred hh-cCCcHHH-HHHhhhhhHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2333333 4433222222 1236766 2334567777788888888888877776544
No 265
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=63.66 E-value=37 Score=28.73 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
++-|...+..+.+.+..++..+..|.+.+.+...++..++.|+
T Consensus 75 q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 75 QEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555666666666666666667777777777777776654
No 266
>PRK09343 prefoldin subunit beta; Provisional
Probab=63.61 E-value=95 Score=26.57 Aligned_cols=31 Identities=10% Similarity=0.291 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCc----hhhHHHHHH
Q 019366 196 VEEKDKKVKELEENIAAVSFTANS----KMGKALMAK 228 (342)
Q Consensus 196 Lee~~~klk~aq~eL~A~kFtPqS----~~GKrLMAK 228 (342)
++.-..+++.+..+|..+. |++ .+|..|+-.
T Consensus 33 le~q~~e~~~~~~EL~~L~--~d~~VYk~VG~vlv~q 67 (121)
T PRK09343 33 IDLELREINKALEELEKLP--DDTPIYKIVGNLLVKV 67 (121)
T ss_pred HHHHHHHHHHHHHHHHcCC--CcchhHHHhhHHHhhc
Confidence 3333444444555555443 444 567777643
No 267
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=63.50 E-value=57 Score=26.32 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Q 019366 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNE 244 (342)
Q Consensus 185 VNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~ls 244 (342)
...++..|..++...+-+..++++.+....-+++....+.|...++.|....|-=|.+|.
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999888877776654
No 268
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=62.98 E-value=27 Score=38.31 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHH
Q 019366 220 KMGKALMAKCKTLQE 234 (342)
Q Consensus 220 ~~GKrLMAKCR~Lqe 234 (342)
..|+.|...||-+..
T Consensus 76 s~~r~~~e~~RI~~s 90 (907)
T KOG2264|consen 76 SIGRILREQKRILAS 90 (907)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566666666665543
No 269
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=62.93 E-value=2.4 Score=46.84 Aligned_cols=245 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred hhHHHhhHHhhhhchhhhHhhHHHHHHHHH---HHHHHHHhccCcC-----------CCCCCCCCChhhhHHHHhhhHhh
Q 019366 61 TGMILSLRESLQNCKDTLATCQLELEAAKS---EIQKWHSSFQNEL-----------FIPPGTSPEPRLVINYLQTLKSS 126 (342)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~---e~~kW~~~f~~e~-----------~i~a~~~~~p~lv~~~l~~lk~s 126 (342)
..-+-+|.-+-....+.+..+..+|+.+++ .+.|+...|+..- .--.....+.+.+...|-.|+..
T Consensus 341 ~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~ 420 (859)
T PF01576_consen 341 NAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNE 420 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 334444444444444555555666665554 3356666565411 11123344566677777777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH-HHhcCCchHHHHHhhhC-hhhHHHHHHHHHHHHHHHHHHH
Q 019366 127 EEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDL-KAQLKPPLMQARRLLLD-PAIHEEFRRLKNLVEEKDKKVK 204 (342)
Q Consensus 127 E~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dl-k~~~~pss~qlR~~LlD-PAVNlef~rLR~eLee~~~klk 204 (342)
=+.+..++..+.|.-..| ..||.++..++.+- +..|.--. ..|.+=.. --+...+..+-..|+..+.+.-
T Consensus 421 lee~~e~~e~lere~k~L-------~~El~dl~~q~~~~~k~v~eLek-~kr~LE~e~~El~~~leE~E~~l~~~E~~~l 492 (859)
T PF01576_consen 421 LEELQEQLEELERENKQL-------QDELEDLTSQLDDAGKSVHELEK-AKRRLEQEKEELQEQLEEAEDALEAEEQKKL 492 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHH-------HHhhccchhhhhhhccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777775555443222 34444444444332 11110000 00000000 0011111122222333333333
Q ss_pred HHHHhhhhcccCCCc----------hhhHHHHHHHHHHHHHHHHH---------hhhhhcccchhhhHHHHHHHHHHHHH
Q 019366 205 ELEENIAAVSFTANS----------KMGKALMAKCKTLQEENDEI---------GRQNEEGETHQLSVKLALQKSLNAEL 265 (342)
Q Consensus 205 ~aq~eL~A~kFtPqS----------~~GKrLMAKCR~LqeENEEL---------Gr~lseGria~Le~eLAlqK~~~eEL 265 (342)
.++.+|++++-.-+- .+=+.+--..+.|+.+.++= .|.=.+|.|..|++.+......+.++
T Consensus 493 Rl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~ 572 (859)
T PF01576_consen 493 RLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEA 572 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 344444444433221 11111222334444443321 11113467777888888888888888
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 266 KSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 266 rk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
.+.+..+...|.++..+++..+...-.++.++......+..|+.+|+.
T Consensus 573 ~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee 620 (859)
T PF01576_consen 573 QKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEE 620 (859)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887777776555444444444444444444444433
No 270
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.74 E-value=1.1e+02 Score=31.58 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 186 HEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 186 Nlef~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
+..++.|..+|.+.+.....++..+..++
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLK 239 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665555555554443
No 271
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.24 E-value=60 Score=25.78 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 250 QLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 250 ~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
.|...--.....+.-||....+++.-+..+...++.....|..|+..+.
T Consensus 23 kLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 23 KLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344445555555555555555555555555555555555555544
No 272
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=62.14 E-value=2.6e+02 Score=31.16 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=16.9
Q ss_pred HHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhH
Q 019366 118 NYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR 151 (342)
Q Consensus 118 ~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~K 151 (342)
..++.+++-...++.++.+...++..+-..+-..
T Consensus 586 ~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 586 EELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555555544444444333
No 273
>smart00338 BRLZ basic region leucin zipper.
Probab=62.11 E-value=26 Score=26.39 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=14.8
Q ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 019366 275 HMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHE 310 (342)
Q Consensus 275 ~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~e 310 (342)
++.+|...+..+......|+.++.....++..|+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444433
No 274
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.11 E-value=2.5e+02 Score=31.13 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHH
Q 019366 85 LEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVT 147 (342)
Q Consensus 85 l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~r 147 (342)
+..|+.+|++--...+..---+- .+-.-+.+.+..|++.-++|.+.+..+..|=..|+.|
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e~Ql---~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKEQQL---KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665443322110000 2233344445555555555555555444443333333
No 275
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=61.97 E-value=40 Score=27.16 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhh---hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 019366 261 LNAELKSQFEALYKHMDG---LTDDVERSNEMVLMLREKLEENDHELEKLKHE 310 (342)
Q Consensus 261 ~~eELrk~~~eL~~~l~e---LdeEvE~lqstl~~LQqeL~~~~~~l~~lk~e 310 (342)
....+|..++.+-.+|.+ ++.-+|.-+..|..|+++++.++..+.+++..
T Consensus 29 ~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 29 ATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555 55566666666666666666666666666543
No 276
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=61.84 E-value=2.4e+02 Score=30.66 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=79.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcC-Cc-hH---HHHHhh-----hChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQLK-PP-LM---QARRLL-----LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~~~-ps-s~---qlR~~L-----lDPAVNlef~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
-.||++.++=.+.+.....-|..-.. ++ .. .+...+ .||..+.+...+..-+.....-..+++.-+..+-
T Consensus 214 ~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le 293 (557)
T COG0497 214 RKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELE 293 (557)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45677777766666666655543111 11 11 223334 3776666666666666666666666666677888
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHH
Q 019366 215 FTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLR 294 (342)
Q Consensus 215 FtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQ 294 (342)
|+|+--.- .-.|.-.| .-|.| -.| ..++--+++..+-.++|- .+...+..+.+|..++..+...+...=
T Consensus 294 ~Dp~~L~~--ve~Rl~~L----~~l~R--KY~--~~~~~l~~~~~~~~~el~-~L~~~~~~~~~Le~~~~~l~~~~~~~A 362 (557)
T COG0497 294 FDPNRLEE--VEERLFAL----KSLAR--KYG--VTIEDLLEYLDKIKEELA-QLDNSEESLEALEKEVKKLKAELLEAA 362 (557)
T ss_pred CCHHHHHH--HHHHHHHH----HHHHH--HhC--CCHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99975110 00011111 01111 011 123334444444444432 244445667777777777777777777
Q ss_pred HHHHHhHHHHH
Q 019366 295 EKLEENDHELE 305 (342)
Q Consensus 295 qeL~~~~~~l~ 305 (342)
+.|...+...+
T Consensus 363 ~~Ls~~R~~~A 373 (557)
T COG0497 363 EALSAIRKKAA 373 (557)
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 277
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=61.05 E-value=1e+02 Score=26.17 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHH-HHhHHHHHHHHHHHHHHHHHhc
Q 019366 126 SEEMLKEQLEKAKKKEAAFIVT-FAKREQEIAELKSAVRDLKAQL 169 (342)
Q Consensus 126 sE~~LkeQl~eakrREnvll~r-LA~KEQEiqel~s~l~dlk~~~ 169 (342)
+.+.|+.|| .+-.-|+.+|+| |+..|.+...+..+|+-+|...
T Consensus 2 ~~aeLR~qL-qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 2 DSAELRRQL-QFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999 677788777765 8999999999999999998864
No 278
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=59.96 E-value=1.1e+02 Score=30.60 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=63.6
Q ss_pred hhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHH
Q 019366 180 LLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQK 259 (342)
Q Consensus 180 LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK 259 (342)
.+||.- -+..||.+|.+.+.|++.|==--+-.- +-=..||=...+|....++|-
T Consensus 72 S~dse~--s~r~lk~~l~evEekyrkAMv~naQLD-----Nek~~l~yqvd~Lkd~lee~e------------------- 125 (302)
T PF09738_consen 72 SVDSEA--SLRDLKDSLAEVEEKYRKAMVSNAQLD-----NEKSALMYQVDLLKDKLEELE------------------- 125 (302)
T ss_pred cccccc--cHHHHHHHHHHHHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 445544 567889999888888876532211111 111124445555555554443
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccc
Q 019366 260 SLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLEED 320 (342)
Q Consensus 260 ~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~~~~ 320 (342)
..+-.+.+-+.+..-+.|++-..+..|+.++...+.+|......+++.-.+...
T Consensus 126 -------E~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 126 -------ETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence 333344444445555677777777777777777777777777777776665443
No 279
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=59.43 E-value=1.1e+02 Score=28.45 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHE 303 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~ 303 (342)
.+++..++.....+-+|+....-+..-.+..+.++.+|++-+-.+.+++...+.+
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666666666666666666666655443
No 280
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=59.18 E-value=3.1e+02 Score=30.99 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhc
Q 019366 262 NAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVL 317 (342)
Q Consensus 262 ~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~ 317 (342)
++++.+.-.---..|.++..-+-.+++.+..=|+.+.....++..+..+|+.++..
T Consensus 337 ~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~e 392 (786)
T PF05483_consen 337 MEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSE 392 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
Confidence 33333333333334444444444445555555667777777788888888888763
No 281
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=58.85 E-value=2.1e+02 Score=29.08 Aligned_cols=88 Identities=19% Similarity=0.314 Sum_probs=52.4
Q ss_pred chhhhHhhHHHHHHHHHHH--------HHHHHhccC----cCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHH
Q 019366 74 CKDTLATCQLELEAAKSEI--------QKWHSSFQN----ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKE 141 (342)
Q Consensus 74 ~~~~~~~~~~~l~~a~~e~--------~kW~~~f~~----e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrRE 141 (342)
++-+-+.-+.|++.-.-.+ .-||+-++. -..|.. ..++.+ . -|......+...+.+-..||
T Consensus 189 s~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~-~~~~~~---~---~L~kl~~~i~~~lekI~sRE 261 (359)
T PF10498_consen 189 SKVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIES-ALPETK---S---QLDKLQQDISKTLEKIESRE 261 (359)
T ss_pred ccCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHH-hhhHHH---H---HHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666544444 478886554 111211 112221 2 24445677888888999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 142 AAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 142 nvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
+.+..+|...=++.+.....+++++..
T Consensus 262 k~iN~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 262 KYINNQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999888877777766666666665443
No 282
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=58.68 E-value=1.8e+02 Score=28.24 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=45.3
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 240 GRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 240 Gr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
|..-.+-....|..++...+.....|..+..++.+-+..+..+++.++..+..+...+......++
T Consensus 83 ~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e 148 (239)
T COG1579 83 SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLE 148 (239)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455667777777777777777777777777777777777777777777666665555444
No 283
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=58.37 E-value=1.7e+02 Score=27.86 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=11.2
Q ss_pred HHhhhhhHHHhhHHHHHHHHH
Q 019366 275 HMDGLTDDVERSNEMVLMLRE 295 (342)
Q Consensus 275 ~l~eLdeEvE~lqstl~~LQq 295 (342)
.+..|..++|+|...|..+.+
T Consensus 132 ~~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQ 152 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 344555566665555554444
No 284
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.33 E-value=1.5e+02 Score=27.24 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=37.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019366 142 AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (342)
Q Consensus 142 nvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A 212 (342)
..++.++..+++++.+++.++..+... ||. .|..|+..+......+..-.+++-+
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el~~~~~~-------------Dp~---~i~~~~~~~~~~~~~anrwTDNI~~ 160 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKELEKYSEN-------------DPE---KIEKLKEEIKIAKEAANRWTDNIFS 160 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CHH---HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 347888888888888888888754333 774 4567777776666666666655533
No 285
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.02 E-value=85 Score=26.79 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=42.4
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcc
Q 019366 270 EALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLE 318 (342)
Q Consensus 270 ~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~~ 318 (342)
.+|++-|.++++.+..|...|-.|+.++...-.+.++|+-|.+..+...
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999999999999999999999998888887744
No 286
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=57.99 E-value=72 Score=26.44 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=36.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
||++.=-.|++++-.++|||..-..|.+-+..+-.--+.+.....+|+++...++..+..|
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666665555555555556666666666666666555433
No 287
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.98 E-value=1.1e+02 Score=25.45 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=14.4
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 278 GLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 278 eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
.+++.++.+...|..|..++.....++..++..|
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444443
No 288
>PRK11820 hypothetical protein; Provisional
Probab=57.52 E-value=1.5e+02 Score=29.32 Aligned_cols=102 Identities=20% Similarity=0.325 Sum_probs=62.2
Q ss_pred HHHHHHHhHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc-hHHHHH--hhhCh--------------hhHHHH
Q 019366 132 EQLEKAKKKE-----AAFIVTFAKREQEIAELKSAVRDLKAQLKPP-LMQARR--LLLDP--------------AIHEEF 189 (342)
Q Consensus 132 eQl~eakrRE-----nvll~rLA~KEQEiqel~s~l~dlk~~~~ps-s~qlR~--~LlDP--------------AVNlef 189 (342)
+++.+++.|| ..+..|+...+.-+..+......+.....-- ...+.. .-+|| -|+.|+
T Consensus 140 ~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~qEval~adK~DI~EEi 219 (288)
T PRK11820 140 DDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLEQEVALLAQKADIAEEL 219 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHcchHHHH
Confidence 3677888998 4455666666655555544333322221100 011111 12455 378888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE 245 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lse 245 (342)
.||++=|..+..-+.. +.+.||+|==-|.-+..|-.=||.-...
T Consensus 220 ~RL~sHl~~f~~~L~~------------~~~vGrkLDFL~QEm~RE~NTigSKs~~ 263 (288)
T PRK11820 220 DRLKSHLKEFREILKK------------GGPVGRKLDFLMQELNREANTLGSKSND 263 (288)
T ss_pred HHHHHHHHHHHHHHhc------------CCCCCcchhHHHHHHhHHHHHHHHccCc
Confidence 9998888888876644 4578999988888888888888875443
No 289
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=57.49 E-value=2.2e+02 Score=28.84 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH-HHHHHH
Q 019366 220 KMGKALMAKCKTLQEENDEIGRQNEEGE---THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEM-VLMLRE 295 (342)
Q Consensus 220 ~~GKrLMAKCR~LqeENEELGr~lseGr---ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqst-l~~LQq 295 (342)
.....|+.|...|+.|--+|-+.+.... |..|-..|........-+...++.|-+--.+|++.+|-=|+- |--|+-
T Consensus 106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~K 185 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWK 185 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3446799999999999999988876432 334444444443333333344445555555677777777776 445777
Q ss_pred HHHHhHHHHHHHHHHHhh
Q 019366 296 KLEENDHELEKLKHELRQ 313 (342)
Q Consensus 296 eL~~~~~~l~~lk~eL~~ 313 (342)
++.+...+-..|+..|.+
T Consensus 186 qm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 186 QMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 888888888888888876
No 290
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.29 E-value=2.7e+02 Score=29.79 Aligned_cols=53 Identities=28% Similarity=0.255 Sum_probs=30.4
Q ss_pred ChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019366 112 EPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRD 164 (342)
Q Consensus 112 ~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~d 164 (342)
+-..++|.+...++-+++|++-..-..+-=+.+-..++.-|+-|.++....++
T Consensus 135 ~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 135 YQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred hhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 44456666666666666666544444443355555666666666666644433
No 291
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.14 E-value=1.8e+02 Score=27.92 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 257 LQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 257 lqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
-.++..+.|..+.....+.|...+.|+..|...|..+..+..+....+.++..++...
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555666688888888888777777666666666555554433
No 292
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=57.00 E-value=59 Score=26.72 Aligned_cols=52 Identities=27% Similarity=0.285 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 265 LKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 265 Lrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
|-++.++|..-|.+-++|+++++.-+-.|+.+|.+--.-..+|+.++...+.
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666667788889999999999999999998877777777766555444
No 293
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=56.15 E-value=1e+02 Score=24.58 Aligned_cols=62 Identities=26% Similarity=0.403 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHH
Q 019366 227 AKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEK 306 (342)
Q Consensus 227 AKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~ 306 (342)
.....|..||..|.- ..+.-|-.||..|++|..+=....++.+- +..++.+++.-|.+
T Consensus 6 ~~l~~LL~EN~~LKe---------------alrQ~N~~Mker~e~l~~wqe~~~~e~~~-------~~~kf~Ear~lv~~ 63 (68)
T PF11577_consen 6 QQLQELLQENQDLKE---------------ALRQNNQAMKERFEELLAWQEKQKEEREF-------LERKFQEARELVER 63 (68)
T ss_dssp -HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 356778899999886 44566888999999999888887777765 77788888888887
Q ss_pred HHHH
Q 019366 307 LKHE 310 (342)
Q Consensus 307 lk~e 310 (342)
|..+
T Consensus 64 L~~E 67 (68)
T PF11577_consen 64 LKEE 67 (68)
T ss_dssp HHC-
T ss_pred hhcc
Confidence 7643
No 294
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=55.46 E-value=67 Score=34.88 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=51.4
Q ss_pred hHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhccc---ch
Q 019366 173 LMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGE---TH 249 (342)
Q Consensus 173 s~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGr---ia 249 (342)
+++++....||+|+.- .|+.-+-.... -|.-+-.-.+|+-|.+....|-.|++++-.....-= ++
T Consensus 418 st~~~~~~~d~~~~~~--km~~~i~~~~~----------~~~sd~~~~rer~l~a~t~kL~~E~e~~q~~~~~~l~~~~~ 485 (588)
T KOG3612|consen 418 STQLGGVHADPTVVED--KMKDAIIDLQE----------STLSDYSGSRERSLVAATEKLRQEFEELQQTSRRELPVPLR 485 (588)
T ss_pred ccccCCcccchHHHHH--HHHHHHHHHHH----------HHHHHhhcCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4677888899998763 45444444333 233333447888899999999999999988766443 45
Q ss_pred hhhHHHHHHHHHHH
Q 019366 250 QLSVKLALQKSLNA 263 (342)
Q Consensus 250 ~Le~eLAlqK~~~e 263 (342)
.++.+++.-+...+
T Consensus 486 ~~~~em~~~r~tlE 499 (588)
T KOG3612|consen 486 NFELEMAEMRKTLE 499 (588)
T ss_pred cchHHHHHHHHHHH
Confidence 55555444443333
No 295
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=55.24 E-value=3.2e+02 Score=29.93 Aligned_cols=86 Identities=23% Similarity=0.361 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 228 KCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 228 KCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
..|..+.+.++|+..+. .+...+..+.-.-..|+..++++.+.+.....+-+..++.|-.|...=.+++..+.++
T Consensus 348 ~vr~~e~eL~el~~~~~-----~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~ 422 (570)
T COG4477 348 SVRKFEKELKELESVLD-----EILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERL 422 (570)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665432 3444555555555666777777777777777777888888888777777777777777
Q ss_pred HHHHh-hhhhcc
Q 019366 308 KHELR-QKSVLE 318 (342)
Q Consensus 308 k~eL~-~~~~~~ 318 (342)
+..|. .++.++
T Consensus 423 ~~~l~eikR~me 434 (570)
T COG4477 423 KSKLHEIKRYME 434 (570)
T ss_pred HHHHHHHHHHHH
Confidence 75553 344443
No 296
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.14 E-value=37 Score=26.26 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=22.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDV 283 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEv 283 (342)
||..||.++......+.-+|++.+++-+-++.+++-+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655555555544
No 297
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.03 E-value=1.2e+02 Score=24.93 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 271 ALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 271 eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
.|.+-+..++.+++++...+-.++.++...+..+..+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555666666666555544
No 298
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=54.69 E-value=2.4e+02 Score=28.35 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=19.0
Q ss_pred CCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHH
Q 019366 104 FIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEK 136 (342)
Q Consensus 104 ~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~e 136 (342)
++|.+. .+...+...+++|+-.=+.|++++..
T Consensus 81 ~~g~~~-~e~Es~~~kl~RL~~Ev~EL~eEl~~ 112 (388)
T PF04912_consen 81 ILGDDS-SEKESPEQKLQRLRREVEELKEELEK 112 (388)
T ss_pred ecCCCC-CCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344432 35566667777776666666666644
No 299
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=54.67 E-value=89 Score=23.44 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=24.2
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 273 YKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
-.++.+|...++.+......|..++.....++..|+.++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666666666666666666666666666666665543
No 300
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.63 E-value=52 Score=34.92 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
..+|++-|+.+..+++.|+.....++++|+..+.++++|+..+
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445555555555555666666666666666555
No 301
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=54.43 E-value=4e+02 Score=30.89 Aligned_cols=217 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCCCCCCCcccccccccccccccccCCCchhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCC
Q 019366 31 SFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTS 110 (342)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~ 110 (342)
+|++++=.+---|.+++..++.--++.++++ -+.+++++|++-.+.| |-|.|.+
T Consensus 127 SFDv~gLQeih~ln~k~i~~~LL~sgt~G~~-~~t~l~~vl~~~~d~L-------------------------yKP~Grn 180 (984)
T COG4717 127 SFDVDGLQEIHELNSKGILGYLLFSGTSGSP-ASTKLLEVLNKEADSL-------------------------YKPSGRN 180 (984)
T ss_pred hcchhhhHHHHHhhHhhHHHHHHHhccCCCc-chHHHHHHHHHHHHHh-------------------------cCCCCCC
Q ss_pred CChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHH
Q 019366 111 PEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFR 190 (342)
Q Consensus 111 ~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~ 190 (342)
|-.--....|+ .+..++.++.+....|=.-|..+..+...+...-+++|+- ..---.++.+.-+-..-.+-.
T Consensus 181 P~iNq~l~klk-------q~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~-~~~i~~~~~~v~l~~~lqE~k 252 (984)
T COG4717 181 PQINQLLEKLK-------QERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRAD-RDHIRALRDAVELWPRLQEWK 252 (984)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 019366 191 RLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (342)
Q Consensus 191 rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~ 270 (342)
+|..+|.. -...+.+|+|+ |--=..| .+.+.++.+.+|..+.-...+ ..
T Consensus 253 ~Leqel~~---------~~~e~~~fP~D---GvlrlEk---------------~~ahL~~~ea~i~~~~vrlae----~~ 301 (984)
T COG4717 253 QLEQELTR---------RREELATFPRD---GVLRLEK---------------REAHLQKTEAEIDALLVRLAE----LK 301 (984)
T ss_pred HHHHHhcc---------chhhhccCCch---hHHHHHH---------------HHHhhhhhhhhhHHHHHHHHh----hh
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 271 ALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 271 eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
+...-++-+.+-|=-+-.++-+...++..+..+....-...+
T Consensus 302 d~~~~LiP~ke~vl~~~~~l~q~~s~i~~~~~E~te~~~~i~ 343 (984)
T COG4717 302 DLASQLIPAKEAVLQALVRLHQQLSEIKASAFELTETLAGIE 343 (984)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
No 302
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=54.05 E-value=1.9e+02 Score=26.96 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 019366 193 KNLVEEKDKKVKELEENIA 211 (342)
Q Consensus 193 R~eLee~~~klk~aq~eL~ 211 (342)
...+.+++.++-.+++.+.
T Consensus 88 ~~klk~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKDELK 106 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 303
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=53.89 E-value=89 Score=23.20 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhh
Q 019366 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGR 241 (342)
Q Consensus 189 f~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr 241 (342)
+..+...+.+...=+......|....++.+...-..++.+|+.++.+....+.
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~ 55 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQE 55 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34566677777778888888886666755556777888888888877666554
No 304
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.87 E-value=2.1e+02 Score=28.39 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=16.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVE 284 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE 284 (342)
|+..|+.+.+.+.....-|-..+..|.+-..+|...+|
T Consensus 171 rlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 171 RLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 34445555444443333333344444444444444443
No 305
>PLN03188 kinesin-12 family protein; Provisional
Probab=53.79 E-value=4.7e+02 Score=31.46 Aligned_cols=85 Identities=16% Similarity=0.277 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc--------cchhhhHHHHHHHHH-----------HHHHHHHHHHHHHH---------
Q 019366 224 ALMAKCKTLQEENDEIGRQNEEG--------ETHQLSVKLALQKSL-----------NAELKSQFEALYKH--------- 275 (342)
Q Consensus 224 rLMAKCR~LqeENEELGr~lseG--------ria~Le~eLAlqK~~-----------~eELrk~~~eL~~~--------- 275 (342)
.|.+|+|..++=..+..|.++-. =|..|-.+|...|-. |.-|+-++.+--+-
T Consensus 1125 ~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellv 1204 (1320)
T PLN03188 1125 QLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLV 1204 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Confidence 48899999999999988776521 134566666555544 77777776654333
Q ss_pred -HhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 276 -MDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 276 -l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
+.+.++.+-.-+..-+..+||-.++++++++||
T Consensus 1205 rl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klk 1238 (1320)
T PLN03188 1205 RLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLK 1238 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666777777777777777776
No 306
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=53.71 E-value=4.3e+02 Score=31.01 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 268 QFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 268 ~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
.+.+.++.+.++..+.|.+...-...|..+.++...+..+|.+|++...
T Consensus 312 k~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 312 KLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 3456677777777777777777777888888888888888888887655
No 307
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=53.45 E-value=3.5e+02 Score=29.93 Aligned_cols=214 Identities=17% Similarity=0.164 Sum_probs=126.8
Q ss_pred hhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCC----CC--------hhhhHHHHhhhHhhHH
Q 019366 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTS----PE--------PRLVINYLQTLKSSEE 128 (342)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~----~~--------p~lv~~~l~~lk~sE~ 128 (342)
.|-+...+.-++..++.|.-+-..|+.--+.|-+.-..+.. ||.+.++ .| .+.+.+-+..+|..=-
T Consensus 35 ~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~--~v~~ie~~q~r~di~~~~~dl~e~vsqm~~~vK~~L~ 112 (683)
T PF08580_consen 35 SGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEV--YVSAIEDLQLREDIANSLFDLIEEVSQMELDVKKTLI 112 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--hccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444444444444333333 2222111 11 1122222223555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-cCC------ch---HHHHH------------------hh
Q 019366 129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ-LKP------PL---MQARR------------------LL 180 (342)
Q Consensus 129 ~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~-~~p------ss---~qlR~------------------~L 180 (342)
.+|+|+..|=.=|-+.-..|-+...||.+|-..+-+|... |.+ +. .++=. .-
T Consensus 113 ~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~ 192 (683)
T PF08580_consen 113 SVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSP 192 (683)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcCCcCCCCCCc
Confidence 6677777777778899999999999999999977777533 111 11 11111 12
Q ss_pred hChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc----------hhhHHHHHHHHHHHHHHHHHhhhhhcccchh
Q 019366 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS----------KMGKALMAKCKTLQEENDEIGRQNEEGETHQ 250 (342)
Q Consensus 181 lDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS----------~~GKrLMAKCR~LqeENEELGr~lseGria~ 250 (342)
.|=+++..|..|.+.++=.+.=|+-+--.|..+..-..+ ..=+.||.|-+.|+.|-++|.+.+-+-|-.-
T Consensus 193 ~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~ 272 (683)
T PF08580_consen 193 QDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNI 272 (683)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 455677788888888877777777777777555443333 2335689999999999999999998888866
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDD 282 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeE 282 (342)
+...+ +.++.+-++.+.+.+..+.+.
T Consensus 273 vFr~l------~~q~~~m~esver~~~kl~~~ 298 (683)
T PF08580_consen 273 VFRNL------GRQAQKMCESVERSLSKLQEA 298 (683)
T ss_pred HHHHH------HHHHHHHHHHHHHHHHHhhcc
Confidence 66554 344444555555555555554
No 308
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=53.16 E-value=22 Score=29.65 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=33.6
Q ss_pred ccccCCCchhhHHHhhHHhhhhchhhhHhhHHHHHHHHHH
Q 019366 52 VEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSE 91 (342)
Q Consensus 52 ~~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e 91 (342)
..+..++-..|-+..-.+.+|..+.+|++++.||.+|+++
T Consensus 56 ~~~~~~~di~~eV~kTh~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 56 LKESDQRDIMGEVSKTHEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455677777777888889999999999999999999864
No 309
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=53.08 E-value=1.2e+02 Score=26.39 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDDVER 285 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~ 285 (342)
|+.-+.....++..+-+...+|..-|.++-..++-
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433333
No 310
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=52.64 E-value=2.2e+02 Score=27.36 Aligned_cols=128 Identities=17% Similarity=0.242 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh-hhcccCCCchhhHHHHH-HHHHHHHHHHHHhhhhhcc---------cchhhh
Q 019366 184 AIHEEFRRLKNLVEEKDKKVKELEENI-AAVSFTANSKMGKALMA-KCKTLQEENDEIGRQNEEG---------ETHQLS 252 (342)
Q Consensus 184 AVNlef~rLR~eLee~~~klk~aq~eL-~A~kFtPqS~~GKrLMA-KCR~LqeENEELGr~lseG---------ria~Le 252 (342)
+||+-++-|..+++..+.+++.++..| .|=+-.-+|-.|.+.|. +...+.+.-+-+-.++.+. +.-...
T Consensus 8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVa 87 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVA 87 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 253 VKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 253 ~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
..|+..-...+.....-+--..-+.+|.+|.-.+.+.+..|-..-....+....+..++
T Consensus 88 rkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~i 146 (205)
T KOG1003|consen 88 RKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEEL 146 (205)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHH
No 311
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=52.63 E-value=94 Score=32.27 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=55.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhccccc
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTD--DVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLEEDK 321 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLde--EvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~~~~~ 321 (342)
|.-++..+++.+.+.-..+|+.+.+.+..-+.+++- .-...+..+..|..++..++..++.|+..|+.........
T Consensus 156 ~~~~p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~ 233 (475)
T PF10359_consen 156 GDNDPRRVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESSS 233 (475)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 455777788888888888888888888887777653 4455566777777888888888888888887777644333
No 312
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=52.57 E-value=54 Score=32.41 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 270 EALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 270 ~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
..+.....+++...+++......|.-++.+++..+.+++...-
T Consensus 198 ~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~ 240 (264)
T PF07246_consen 198 EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDIS 240 (264)
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4456666677777777777777888888888888888876543
No 313
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.54 E-value=79 Score=25.79 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=26.4
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHH
Q 019366 244 EEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 244 seGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL 297 (342)
.+.||..||+.+|.|...+++ |.+.|-+.--.+++++..+..|-+++
T Consensus 6 lE~Ri~eLE~r~AfQE~tiee-------Ln~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEE-------LNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888877655444 44555555555555444444443333
No 314
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=52.46 E-value=1.1e+02 Score=28.59 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhhhhccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHH
Q 019366 228 KCKTLQEENDEIGRQNEEGE-THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEK 306 (342)
Q Consensus 228 KCR~LqeENEELGr~lseGr-ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~ 306 (342)
+...+..+..++|+..+..- ...++.+..-.....+-++...+.|.+++...+ .+ +.++.++++|.+.+.+++.
T Consensus 106 ~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~----~d~l~ie~~L~~v~~eIe~ 180 (262)
T PF14257_consen 106 KFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TV----EDLLEIERELSRVRSEIEQ 180 (262)
T ss_pred HHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CH----HHHHHHHHHHHHHHHHHHH
Confidence 55566666668886665543 455666666666666666666666666666444 22 2366678888888888887
Q ss_pred HHHHHhhhhh
Q 019366 307 LKHELRQKSV 316 (342)
Q Consensus 307 lk~eL~~~~~ 316 (342)
++..+.....
T Consensus 181 ~~~~~~~l~~ 190 (262)
T PF14257_consen 181 LEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHH
Confidence 7776655544
No 315
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.00 E-value=69 Score=28.77 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=35.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHh--hhChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 019366 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRL--LLDPAIHEEFRRLKNLVEEKDKKVKELEEN 209 (342)
Q Consensus 144 ll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~--LlDPAVNlef~rLR~eLee~~~klk~aq~e 209 (342)
++.|+.+.-.++..+...+..++.+....+...+.. -.+-....++..|+.+|..++..++.++.+
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766644333323322 112223445555555555555555444443
No 316
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=51.93 E-value=1e+02 Score=27.59 Aligned_cols=47 Identities=26% Similarity=0.303 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh---HHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 259 KSLNAELKSQFEALYKHMDGLTD---DVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 259 K~~~eELrk~~~eL~~~l~eLde---EvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
++..+.++.++.+...-|..|.. ++|.|+..|-.||.+..+.....+
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555 889988888889888885554444
No 317
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=51.85 E-value=1.3e+02 Score=24.45 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=49.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhC----hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019366 141 EAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLD----PAIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (342)
Q Consensus 141 Envll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlD----PAVNlef~rLR~eLee~~~klk~aq~eL~A 212 (342)
-...+-.|....++-..+...+..+|+..+--+.+.....-. .....+...++.++...+..+..+..++..
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888765554444444432 234445566677777777777777777654
No 318
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=51.63 E-value=2.4e+02 Score=30.43 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=13.4
Q ss_pred hChhhHHHHHHHHHHHHHHHH
Q 019366 181 LDPAIHEEFRRLKNLVEEKDK 201 (342)
Q Consensus 181 lDPAVNlef~rLR~eLee~~~ 201 (342)
-|=|.|.++.+|+..-..-+.
T Consensus 311 edmaLNEvL~kLk~tn~kQq~ 331 (527)
T PF15066_consen 311 EDMALNEVLQKLKHTNRKQQN 331 (527)
T ss_pred HHHHHHHHHHHHHhhhHHHHH
Confidence 466778888888765444333
No 319
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=51.51 E-value=1.6e+02 Score=25.31 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHH
Q 019366 227 AKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEK 306 (342)
Q Consensus 227 AKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~ 306 (342)
+-..+|..-.+|+.+.+.+- |..=-..|-.+-+.++.+.+....+...|..|+.-++|++..|..=-+++......+.+
T Consensus 33 ~~l~kL~~~i~eld~~i~~~-v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~r 111 (132)
T PF10392_consen 33 TPLKKLNFDIQELDKRIRSQ-VTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLER 111 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44556666666666655432 11111122233333444444444444444444444444444444444444444444444
Q ss_pred HH
Q 019366 307 LK 308 (342)
Q Consensus 307 lk 308 (342)
+.
T Consensus 112 l~ 113 (132)
T PF10392_consen 112 LH 113 (132)
T ss_pred HH
Confidence 43
No 320
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=51.39 E-value=2.7e+02 Score=28.00 Aligned_cols=125 Identities=19% Similarity=0.303 Sum_probs=76.6
Q ss_pred HHHHHHHhHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc-hHHH--HHhhhCh--------------hhHHHH
Q 019366 132 EQLEKAKKKE-----AAFIVTFAKREQEIAELKSAVRDLKAQLKPP-LMQA--RRLLLDP--------------AIHEEF 189 (342)
Q Consensus 132 eQl~eakrRE-----nvll~rLA~KEQEiqel~s~l~dlk~~~~ps-s~ql--R~~LlDP--------------AVNlef 189 (342)
+.+.+++.|| ..+..||...|..+.++++...++-..+... ...+ -..-+|| -|+.+|
T Consensus 142 ~~l~~~R~~EG~~L~~~l~~~L~~ie~~v~~v~~~~P~~~~~~~~~l~~ri~~~~~~~d~~rl~qE~al~a~K~DI~EEl 221 (290)
T COG1561 142 DDLIEMREREGAALKADLLQRLDAIEELVEKVESLMPEILEWYRERLVARLNEAQDQLDEDRLEQEVALLAQKADIAEEL 221 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHhhHHHHH
Confidence 3566889998 5678889999998888887665553332111 0000 0122333 378888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~ 269 (342)
.||++-+.++..-+ +-..+.|++|==-..-+-.|-.-||.......|..+..+ .|..++.||-+.
T Consensus 222 dRL~sHv~~~~~iL------------~~~g~vGRkLDFl~QE~nREaNTl~SKS~~~~it~~~vE---lK~~IEqmREQV 286 (290)
T COG1561 222 DRLKSHVKEFRNIL------------EKGGPVGRKLDFLMQEFNREANTLGSKSNAAEITAAVVE---LKVLIEQMREQV 286 (290)
T ss_pred HHHHHHHHHHHHHH------------hcCCccchhHHHHHHHHhHHHHhhhhccchHHHHHHHHH---HHHHHHHHHHHH
Confidence 88888888777754 236789998865555666666666665554445444444 355555555554
Q ss_pred HH
Q 019366 270 EA 271 (342)
Q Consensus 270 ~e 271 (342)
+.
T Consensus 287 QN 288 (290)
T COG1561 287 QN 288 (290)
T ss_pred hc
Confidence 43
No 321
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=50.98 E-value=4.7e+02 Score=30.68 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=21.1
Q ss_pred HHhhhHhhHHHHHHHHHHHHhHHHHHHH
Q 019366 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIV 146 (342)
Q Consensus 119 ~l~~lk~sE~~LkeQl~eakrREnvll~ 146 (342)
.|+.+-..=++||+-|..++.+..||+.
T Consensus 405 llKd~~~EIerLK~dl~AaReKnGvyis 432 (1041)
T KOG0243|consen 405 LLKDLYEEIERLKRDLAAAREKNGVYIS 432 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhCceEec
Confidence 4566667778899999888888666654
No 322
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=50.80 E-value=1.5e+02 Score=24.86 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 019366 155 IAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (342)
Q Consensus 155 iqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~ 213 (342)
.+++..++.+++........ ||.....+.+++.+++..+.+..-.+.=++|+
T Consensus 33 n~el~~el~~l~~~~~~~~~-------~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~l 84 (106)
T PF05837_consen 33 NQELAQELLELAEKQKSQRE-------DEELSEKLEKLEKELKKSRQRWRVMKNVFQAL 84 (106)
T ss_pred HHHHHHHHHHHHHHhhhhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444332222 99999999999999999999999999887653
No 323
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.72 E-value=3.9e+02 Score=29.68 Aligned_cols=126 Identities=16% Similarity=0.267 Sum_probs=61.0
Q ss_pred HHhhhHhhHHHHHHHH--------HHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHH
Q 019366 119 YLQTLKSSEEMLKEQL--------EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFR 190 (342)
Q Consensus 119 ~l~~lk~sE~~LkeQl--------~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~ 190 (342)
-++-|-..-.-|++++ .+.++|-+.+.......-++|+++......++.... ....=|.
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae-------------~LaeR~e 603 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAE-------------KLAERYE 603 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 3444444444444443 344555555655555555555555555555543310 1112233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHH
Q 019366 191 RLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNA 263 (342)
Q Consensus 191 rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~e 263 (342)
+.+..-+...++++..-..+.+- =.+-|..=+.++.-.+.+..+...|+. +|.++-..+..|+.+++
T Consensus 604 ~a~d~Qe~L~~R~~~vl~~l~~~-~P~LS~AEr~~~~EL~~~~~~l~~l~~-----si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 604 EAKDKQEKLMKRVDRVLQLLNSQ-LPVLSEAEREFKKELERMKDQLQDLKA-----SIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 44444444444444444444332 223455556666666666666655554 44455555555555443
No 324
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=50.65 E-value=44 Score=27.39 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=14.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 291 LMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 291 ~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
..++++..+++.++.+|+++|++..-
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555433
No 325
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=50.63 E-value=1.4e+02 Score=24.33 Aligned_cols=54 Identities=28% Similarity=0.398 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh---HHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 260 SLNAELKSQFEALYKHMDGLTD---DVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 260 ~~~eELrk~~~eL~~~l~eLde---EvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
...+.|+.....+-+-|..+-. +++.+-..+..+..++...+.++..+..++..
T Consensus 43 ~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 43 QELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333333332 45555555555555555555555555554443
No 326
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.49 E-value=1.2e+02 Score=23.86 Aligned_cols=80 Identities=14% Similarity=0.313 Sum_probs=50.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc-h-HHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019366 131 KEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP-L-MQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE 208 (342)
Q Consensus 131 keQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~ps-s-~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~ 208 (342)
..++.....+=..+...+..++.++.++...+.+|.....+. . -..-.+|+--.+......|...++..+.+++.+..
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~ 83 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEK 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777778888999999999999999999987763321 1 11234444444555555555555555555554444
Q ss_pred hh
Q 019366 209 NI 210 (342)
Q Consensus 209 eL 210 (342)
.+
T Consensus 84 ~~ 85 (106)
T PF01920_consen 84 QL 85 (106)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 327
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=50.24 E-value=78 Score=28.51 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 260 SLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 260 ~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
+-++.|+++.++|.+.+..+.+.+..+-..+..+++++++..+...
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888888877777777777777666554
No 328
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=49.71 E-value=89 Score=26.41 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=35.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
+++|.++ ++=-+.+.|-.+...+.+-+..+..+.+++...+..+.++++..+.++
T Consensus 63 LaQl~ie--YLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 63 LAQLSIE--YLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555554 444444556666777777777777777777777777777777766653
No 329
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.50 E-value=2.3e+02 Score=26.61 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 019366 191 RLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (342)
Q Consensus 191 rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~ 270 (342)
.+.+........-..+|.....|. .--..|.+..+.|..|.+-|.. .+.+|+..++.++..++.|..+.+
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~-----~e~~~L~~e~~~l~~e~e~L~~-----~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWD-----DEKQELLAEYRQLEREIENLEV-----YNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555554 1223466777777777776666 345666666666666666666666
Q ss_pred HHHHHHhhhhhHH
Q 019366 271 ALYKHMDGLTDDV 283 (342)
Q Consensus 271 eL~~~l~eLdeEv 283 (342)
++...-.++.-=+
T Consensus 95 ~~~~~~~~l~p~m 107 (251)
T PF11932_consen 95 QIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555554433
No 330
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.48 E-value=3.9e+02 Score=29.33 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=54.1
Q ss_pred cCCCchhhHHHHHHHHHHHH-HHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHH----H
Q 019366 215 FTANSKMGKALMAKCKTLQE-ENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNE----M 289 (342)
Q Consensus 215 FtPqS~~GKrLMAKCR~Lqe-ENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqs----t 289 (342)
..|-+..|.-+++..+.+.. .+.++.. .+|.-+.++-.+.++..++.....++-+.+..+..++-...+ .
T Consensus 405 pe~~~~~~~d~k~~V~~~l~el~~ei~~-----~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~ 479 (581)
T KOG0995|consen 405 PERAATNGVDLKSYVKPLLKELLDEISE-----ELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELK 479 (581)
T ss_pred CccCccccccchhHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445888889999887653 3344433 455555555555555555555555555554444444333222 2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 290 VLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 290 l~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
...-+.+..+.+.+++.|..+|.+.+.
T Consensus 480 k~e~eee~~k~~~E~e~le~~l~~l~l 506 (581)
T KOG0995|consen 480 KEEAEEEWKKCRKEIEKLEEELLNLKL 506 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344556666677777766665554
No 331
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=49.40 E-value=1.5e+02 Score=27.57 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH-HHhh-HHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 258 QKSLNAELKSQFEALYKHMDGLTDD-VERS-NEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 258 qK~~~eELrk~~~eL~~~l~eLdeE-vE~l-qstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
.++.+++|++..+.+..-..+++.+ ++.+ ..+.-.+.+.|.....++..+...+++
T Consensus 46 itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~e 103 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQE 103 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666655 5555 334555566666555555555544433
No 332
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=49.35 E-value=1.4e+02 Score=25.01 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=19.1
Q ss_pred cchhhhHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHH
Q 019366 247 ETHQLSVKLALQ--KSLNAELKSQFEALYKHMDGLTDDVERSNEMVL 291 (342)
Q Consensus 247 ria~Le~eLAlq--K~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~ 291 (342)
|++.+|+++..+ +..+..|+....++..=+..+...++++...+-
T Consensus 50 Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 50 RLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444443 333333444444444444444444444444443
No 333
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=49.23 E-value=2.4e+02 Score=26.74 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=79.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHH----HhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 019366 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR----RLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS 219 (342)
Q Consensus 144 ll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR----~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS 219 (342)
|+.-|+-.|=|+|-.---|..||+.+...-.+-+ ..+.|| |..|..--.... .......+. .+
T Consensus 15 LL~LLsilEGELqARD~vI~~Lkaer~~~~~~e~~Yg~~~~~dp-----~~ALqRD~~~~~-----~~~~~~~v~---~~ 81 (192)
T PF09727_consen 15 LLKLLSILEGELQARDVVIAMLKAERKKVFLLEARYGFYNPNDP-----FLALQRDSEAAG-----GEKEEEDVY---EN 81 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCCCcCcH-----HHHHHhHHHhcC-----CCCccCcch---hh
Confidence 5677888888988888888888888655432222 234555 444432221111 001111221 11
Q ss_pred h--hhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHH---HHH----HHHHHHhhhhhHHHhhHHHH
Q 019366 220 K--MGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS---QFE----ALYKHMDGLTDDVERSNEMV 290 (342)
Q Consensus 220 ~--~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk---~~~----eL~~~l~eLdeEvE~lqstl 290 (342)
+ .=.+||++||.-|.-- + ++|-.--..++..+.+|.. .+. .-++|.--|+.|.++|...|
T Consensus 82 pl~~Le~l~~~qk~~q~Rm------~-----~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~l 150 (192)
T PF09727_consen 82 PLAELEKLMEHQKKMQRRM------L-----EQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQL 150 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH------H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 2 3368999999988432 2 1121112222333333322 222 23678888899999988888
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 019366 291 LMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 291 ~~LQqeL~~~~~~l~~lk~eL 311 (342)
-+=..+...+..+..++...|
T Consensus 151 E~Ek~~~~~~EkE~~K~~~~l 171 (192)
T PF09727_consen 151 EQEKAQQKKLEKEHKKLVSQL 171 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776665555444
No 334
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.02 E-value=1.2e+02 Score=30.94 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=22.9
Q ss_pred hHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 281 DDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 281 eEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
.....+..+...|.+++++.+.++..|+.+++..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666667777777777777777777665
No 335
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=49.02 E-value=44 Score=30.40 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=41.7
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccCCCchhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhcc
Q 019366 26 SGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQ 100 (342)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~ 100 (342)
|+.--..+|..|+|.|-|+++|.. -++|.-.+...+-..+.|+-+..+.+-..|-++.|.
T Consensus 31 s~~~~~~~deldEEfD~~ps~~~~---------------~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~alls 90 (156)
T PF08372_consen 31 SHADSAHPDELDEEFDTFPSSRPP---------------DSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLS 90 (156)
T ss_pred cccccCCcchhhhhhccccccccc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 443344566667788999988743 245666666666677788888888888888887554
No 336
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=48.85 E-value=1.4e+02 Score=27.85 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=45.4
Q ss_pred ccchhhhHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 246 GETHQLSVKLALQKSLNAELK----SQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELr----k~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
+-++.|+.+|+.++..++++- ..|.+...-|..|+..-..+-...+.+.......+.++.+++.+..++
T Consensus 143 ~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 143 AMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666653 345566666777777777777777777777777777777776555443
No 337
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.74 E-value=1.2e+02 Score=28.98 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=14.2
Q ss_pred hcccCCCchhhHHHHHHHHHHHHHHHHH
Q 019366 212 AVSFTANSKMGKALMAKCKTLQEENDEI 239 (342)
Q Consensus 212 A~kFtPqS~~GKrLMAKCR~LqeENEEL 239 (342)
=|.|..+....++ .+|..|+.+.+.+
T Consensus 68 ywsfps~a~~~~k--s~~qeLe~~L~~~ 93 (203)
T KOG3433|consen 68 YWSFPSEAICDRK--SVLQELESQLATG 93 (203)
T ss_pred ccccchHHHHHHH--HHHHHHHHHHHHh
Confidence 5889877644432 3455555444443
No 338
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.72 E-value=65 Score=27.79 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
+..|..-+..+..+++.|...|..|-+|....+-+...|...|.+
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444454444444445555555555555444444
No 339
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=48.72 E-value=34 Score=34.28 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHH
Q 019366 222 GKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ 268 (342)
Q Consensus 222 GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~ 268 (342)
+..|+.-|.-|..+|++|..++ ..||.||.+.|..+.++.+.
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa-----~~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQA-----SELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 3457779999999999999954 57899999999888887653
No 340
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=48.68 E-value=1.3e+02 Score=26.15 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccc
Q 019366 288 EMVLMLREKLEENDHELEKLKHELRQKSVLEED 320 (342)
Q Consensus 288 stl~~LQqeL~~~~~~l~~lk~eL~~~~~~~~~ 320 (342)
.....||..|..++.+++||+.+++...-++.+
T Consensus 80 ~~~q~lq~~I~Ek~~eLERl~~E~~sL~kve~e 112 (120)
T PF14931_consen 80 AQQQQLQALIAEKKMELERLRSEYESLQKVEQE 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999998887665433
No 341
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=48.23 E-value=16 Score=30.18 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=23.2
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 270 EALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 270 ~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
.+.+.||..+..+++++...+..|+.++..+..++..++.
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3556677777777777776666666666666666665543
No 342
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=48.13 E-value=96 Score=30.23 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 224 rLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
++-.+.+.|..+|.+|-. +|+++...++.-+.-++|.|..-+ ..++++++.+-.|-.+|..||+
T Consensus 189 ~~~~~~k~le~~k~~Le~-----~ia~~k~K~e~~e~r~~E~r~ieE------kk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 189 RATTEWKVLEDKKKELEL-----KIAQLKKKLETDEIRSEEEREIEE------KKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 345577888888888776 566666666666666666443311 2345555655555555555543
No 343
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=48.09 E-value=61 Score=31.06 Aligned_cols=18 Identities=6% Similarity=0.218 Sum_probs=6.5
Q ss_pred HHHHhhhhhHHHhhHHHH
Q 019366 273 YKHMDGLTDDVERSNEMV 290 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl 290 (342)
..-|+.|..||.+|...|
T Consensus 60 ~~ql~~lq~ev~~LrG~~ 77 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQI 77 (263)
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 333333333333333333
No 344
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.07 E-value=2.7e+02 Score=26.98 Aligned_cols=35 Identities=11% Similarity=0.320 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 134 l~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
+....+|--.+-.+|+.++.||+.|+-++.-+|..
T Consensus 21 i~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~g 55 (218)
T KOG1655|consen 21 IDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPG 55 (218)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33445565566678999999999999999887654
No 345
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=48.05 E-value=4.1e+02 Score=29.12 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
|..+|+-.++....++-+.+++..|++..-..-+.|+..+.-+|.+-.+.-..+..-+.+|...++
T Consensus 238 Llsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 238 LLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455566666666666666667777776665555555555555666655555555555666655544
No 346
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=47.55 E-value=2.4e+02 Score=26.29 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHH----HHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKA----LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKr----LMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eEL 265 (342)
.+.+..+-+....+.++...|.+-.++|.+..+.. |-+..-.|..+|.. |+.++...-...+-.
T Consensus 116 ~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~------------le~el~s~~~rq~L~ 183 (240)
T PF12795_consen 116 ERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEM------------LEQELLSNNNRQELL 183 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHH------------HHHHHHCcHHHHHHH
Confidence 47778888999999999999999888887655543 23333344444444 444444444445555
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHH-HHhHHHHHHHHHHHhhhhh
Q 019366 266 KSQFEALYKHMDGLTDDVERSNEMVLMLREKL-EENDHELEKLKHELRQKSV 316 (342)
Q Consensus 266 rk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL-~~~~~~l~~lk~eL~~~~~ 316 (342)
+.+.+.+...+..++..+.-+++.|......- +.+-.+.+++..+.....|
T Consensus 184 ~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~~~a~~~~~~~~~~~p 235 (240)
T PF12795_consen 184 QLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQAVEEAEQLQEESADLPP 235 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCh
Confidence 55566666666667777777777776554332 3333333433333333333
No 347
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=47.25 E-value=3.3e+02 Score=27.88 Aligned_cols=97 Identities=21% Similarity=0.301 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 019366 192 LKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEA 271 (342)
Q Consensus 192 LR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~e 271 (342)
|...++....++..+...++.-.|-.+....+.++.+...|..-.+-+ .+ ...+.....+
T Consensus 4 ~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~-------------------~~-~~~~~~~~~~ 63 (359)
T PRK00591 4 MLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAY-------------------RE-YKQAQEDLEE 63 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHH-------------------HH-HHHHHHHHHH
Confidence 456677778889999999999999988877777776555554222111 11 2222333444
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 272 LYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 272 L~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
+..++.+ +....+...+.+++......+..+..+|..
T Consensus 64 ~~~l~~~-----e~D~~~~~~~~~e~~~l~~~l~~~e~~l~~ 100 (359)
T PRK00591 64 AKEMLEE-----ESDPEMREMAKEELKELEERLEELEEELKI 100 (359)
T ss_pred HHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444431 122345566777888888888887776654
No 348
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=47.05 E-value=98 Score=33.29 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=36.0
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHhhHHHHHHHHHHHHHhH
Q 019366 241 RQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMD-------GLTDDVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 241 r~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~-------eLdeEvE~lqstl~~LQqeL~~~~ 301 (342)
+.-=..||.+|..++....+-..-+...++.|...+. .++++++..+..|..||.||..++
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456777777776666666666666666666655 455555555555555555555543
No 349
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.01 E-value=5.4e+02 Score=30.26 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 250 QLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 250 ~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
.|--+|-..+-+..+|.++.+.-.+++-+.+.-+-.--+.+..||.+|.....+..-..+++++
T Consensus 494 DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q 557 (1243)
T KOG0971|consen 494 DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQ 557 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcC
Confidence 4445666777777787777777777777777777777777777777777777766665555554
No 350
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=46.31 E-value=3.4e+02 Score=27.63 Aligned_cols=148 Identities=17% Similarity=0.188 Sum_probs=78.4
Q ss_pred hHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHH
Q 019366 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIV 146 (342)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~ 146 (342)
+|.........|..++..+..|....+.++. ....... +...-+.... -..+..|+..++.+-..
T Consensus 193 ~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~---~~~l~~~--~~~~~~~~~~-------~~~ln~ql~~~~~~~~~--- 257 (458)
T COG3206 193 FRRASDSLDERLEELRARLQEAEAQVEDFRA---QHGLTDA--ARGQLLSEQQ-------LSALNTQLQSARARLAQ--- 257 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCccc--ccchhHHHHH-------HHHHHHHHHHHHHHHHH---
Confidence 4555556667778888888888888888777 2222221 1111111111 12233344333332222
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHH
Q 019366 147 TFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALM 226 (342)
Q Consensus 147 rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLM 226 (342)
.++.+.-+...... ......++..+-.| .++.||+........+..... .|.|.++.+..+-
T Consensus 258 ----~~a~l~~~~~~~~~-----~~~~~~~~~~~~s~----~i~~Lr~~~~~~~~~~~~l~~-----~~~~~~p~~~~~~ 319 (458)
T COG3206 258 ----AEARLASLLQLLPL-----GREAAALREVLESP----TIQDLRQQYAQVRQQIADLST-----ELGAKHPQLVALE 319 (458)
T ss_pred ----HHHHHHHHHHhhcc-----cccchhhhHHhccH----HHHHHHHHHHHHHHHHHHHHH-----hhcccChHHHhHH
Confidence 22222222111111 11124567777888 456777777776666665544 4566777777777
Q ss_pred HHHHHHHHHHHHHhhhhhccc
Q 019366 227 AKCKTLQEENDEIGRQNEEGE 247 (342)
Q Consensus 227 AKCR~LqeENEELGr~lseGr 247 (342)
+....+.....+..+.+..++
T Consensus 320 ~q~~~~~~~~~~e~~~~~~~~ 340 (458)
T COG3206 320 AQLAELRQQIAAELRQILASL 340 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 777777766666555555443
No 351
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.18 E-value=1.7e+02 Score=24.26 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=48.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
.+||..+-..=..+.-|+-..++|-.--..|..+++...+.-..|.++..+.+.+-.--+..|.
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888777788888888888888888888888887777777777777777777666555554
No 352
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.09 E-value=2.6e+02 Score=26.25 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 019366 225 LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVER 285 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~ 285 (342)
|......|...|+.+.+. ++.++.+++-.+..++.+.....++.-+|..+-+..+.
T Consensus 61 l~~e~e~L~~~~~~l~~~-----v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQ-----VASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556655553 34555555555666666666655555555555444444
No 353
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=45.88 E-value=2.6e+02 Score=28.28 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH
Q 019366 84 ELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVR 163 (342)
Q Consensus 84 ~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~ 163 (342)
+|++-+.-|..-.+.+-.|.|-|- +.+..++.-.-..|...-+.|..|..+ -|||.++-|++=-+++..
T Consensus 185 ele~tk~Klee~QnelsAwkFTPd--S~tGK~LMAKCR~L~qENeElG~q~s~---------Gria~Le~eLAmQKs~se 253 (330)
T KOG2991|consen 185 ELEQTKDKLEEAQNELSAWKFTPD--SKTGKMLMAKCRTLQQENEELGHQASE---------GRIAELEIELAMQKSQSE 253 (330)
T ss_pred HHHHHHHHHHHHHhhhheeeecCC--CcchHHHHHHHHHHHHHHHHHHhhhhc---------ccHHHHHHHHHHHHhhHH
Confidence 334434434333343333444443 456778888888888888888888743 468888888888888888
Q ss_pred HHHHhcCCchHHHHHhhhCh-hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 164 DLKAQLKPPLMQARRLLLDP-AIHEEFRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 164 dlk~~~~pss~qlR~~LlDP-AVNlef~rLR~eLee~~~klk~aq~eL 210 (342)
++|..+.---..+-.+--|- -++.-|.=|-.+|+++++++..+.-.+
T Consensus 254 Elkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 254 ELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776321111111111110 122334445666667776666555544
No 354
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=45.86 E-value=3.1e+02 Score=27.07 Aligned_cols=191 Identities=16% Similarity=0.185 Sum_probs=111.0
Q ss_pred hhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHh
Q 019366 60 ATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKK 139 (342)
Q Consensus 60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakr 139 (342)
-...|=.|.+..+.|...|..|..-|..=.++..+.+..|..- +..+. ....|+.-=.+++..+..|..
T Consensus 77 l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~--------~~S~~---~~~~l~~~~~k~~~~L~~A~~ 145 (337)
T cd09234 77 LVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKR--------GSSIA---HVTELKRELKKYKEAHEKASQ 145 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCC--------CCchh---hHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777778888899999999999999999999976631 11111 233455555667777878887
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHH---HHHHHHHHHHHHhh--hhcc
Q 019366 140 KEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLV---EEKDKKVKELEENI--AAVS 214 (342)
Q Consensus 140 REnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eL---ee~~~klk~aq~eL--~A~k 214 (342)
--..+-..+..-..-|.-|.....++... -|++.. +.+|.....+.+||..+ ...+.+=...-.+| .+.+
T Consensus 146 sD~~l~~~~~~~~~~l~lL~~~~~~l~~~-iPs~~~----~~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~ 220 (337)
T cd09234 146 SNTELHKAMNLHIANLKLLAGPLDELQKK-LPSPSL----LDRPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIHE 220 (337)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHhh-CCCccc----cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777777776666666665556666555 344321 22345555566666544 44444434444444 2222
Q ss_pred cCCCchhhHHHHHHHH---HHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 215 FTANSKMGKALMAKCK---TLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALY 273 (342)
Q Consensus 215 FtPqS~~GKrLMAKCR---~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~ 273 (342)
+..+.+-|...-+ .|. -+||++ =..-+..++..++.|.....+++..+..+.
T Consensus 221 ---DDI~~~ll~~~~~~~e~lf--~~eL~k--~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~ 275 (337)
T cd09234 221 ---DDITSKLVTTTGGDMEDLF--KEELKK--HDQLVNLIEQNLAAQENILKALTEANAKYA 275 (337)
T ss_pred ---CCchHHHHHhcchhHHHHH--HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333332211 111 135655 223456666777777777777777666654
No 355
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=45.85 E-value=4.9e+02 Score=29.40 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhhhhcccchhhhHH---HHHHHHHHHHHH----------HHHHHHHHHHhhhhhHHHhhHHHHHHHHH
Q 019366 229 CKTLQEENDEIGRQNEEGETHQLSVK---LALQKSLNAELK----------SQFEALYKHMDGLTDDVERSNEMVLMLRE 295 (342)
Q Consensus 229 CR~LqeENEELGr~lseGria~Le~e---LAlqK~~~eELr----------k~~~eL~~~l~eLdeEvE~lqstl~~LQq 295 (342)
....+.|-+.|-.++|.++ ..|+++ +..+++|+.+.- ..-++|.+-|..|.+|-+.|+.|+-.||=
T Consensus 192 La~~q~e~d~L~~qLsk~~-~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqV 270 (739)
T PF07111_consen 192 LAEAQREADLLREQLSKTQ-EELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQV 270 (739)
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666552 456665 555667775443 33478889999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhhhhh
Q 019366 296 KLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 296 eL~~~~~~l~~lk~eL~~~~~ 316 (342)
.+.-...-++=-..+|..|-+
T Consensus 271 RvqSLt~IL~LQEeEL~~Kvq 291 (739)
T PF07111_consen 271 RVQSLTDILTLQEEELCRKVQ 291 (739)
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 999888777755677776653
No 356
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=45.81 E-value=3.5e+02 Score=27.75 Aligned_cols=96 Identities=20% Similarity=0.268 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 019366 192 LKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEA 271 (342)
Q Consensus 192 LR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~e 271 (342)
|...++....++.++...++.-.|-++....+.++.+...|..-.+ .... ...+.....+
T Consensus 5 ~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~-------------------~~~~-~~~~~~~~~~ 64 (360)
T TIGR00019 5 LLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVD-------------------CYRE-YQQAQEDIKE 64 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHH-------------------HHHH-HHHHHHHHHH
Confidence 4566677788888999999988998888777777665555442222 2111 2223334455
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 272 LYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 272 L~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
+..++.+ . ..+++..+..++.....+++.+..+|..
T Consensus 65 ~~el~~~--~----D~e~~~~a~~e~~~l~~~~~~~e~~l~~ 100 (360)
T TIGR00019 65 AKEILEE--S----DPEMREMAKEELEELEEKIEELEEQLKV 100 (360)
T ss_pred HHHHHhc--c----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 1 2334566677777777778777766543
No 357
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=45.19 E-value=1.8e+02 Score=27.63 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=41.5
Q ss_pred HHHhhhC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-----hhhHHHHHHHHHHHHHHH
Q 019366 176 ARRLLLD-PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS-----KMGKALMAKCKTLQEEND 237 (342)
Q Consensus 176 lR~~LlD-PAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS-----~~GKrLMAKCR~LqeENE 237 (342)
+|.++.| |.....+..++.-+..+-....+...--.+-+|.+.+ ..||.||...|.--++.+
T Consensus 96 l~~l~~d~p~~~~~l~~l~~~i~~~l~~~~~~i~~~r~~~~eaa~~ii~s~~Gk~lm~~ir~~l~~i~ 163 (207)
T COG5278 96 LRALTADDPELLESLDDLEPLIQWKLAEADETIPLRRDGKLEAAVQIISSDQGKVLMDAIRQYLQEIE 163 (207)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 4667777 8888877777776665555555444444444465544 689999999998665443
No 358
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=45.07 E-value=1.9e+02 Score=30.98 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=61.3
Q ss_pred hhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHH
Q 019366 179 LLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQ 258 (342)
Q Consensus 179 ~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlq 258 (342)
.--||-|...+.-+.+=|=.++.-+..+++...-|+ ..=+.|-.+|..|- ||=|..|+=. -.||.=-...
T Consensus 103 ~~ddpDi~~~l~gvnSGLvrAKDSItSlKekt~~vn-----QHVq~LQseCsvls-EnLErrrQEa----eELEgyCsqL 172 (558)
T PF15358_consen 103 APDDPDITELLEGVNSGLVRAKDSITSLKEKTSRVN-----QHVQTLQSECSVLS-ENLERRRQEA----EELEGYCSQL 172 (558)
T ss_pred CCCCccHHHHHhhhcccceecccchhhHHHhhHHHH-----HHHHHHHHHhHHHH-HHHHhhhhHH----HHHHHHHHHH
Confidence 345888877777666555555555556666555554 45577889998875 7777777433 3333332233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 259 KSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 259 K~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
|..+.-+.++.++.+----.|..--.-+.+.+..||++|+
T Consensus 173 k~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLq 212 (558)
T PF15358_consen 173 KENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQ 212 (558)
T ss_pred HHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhc
Confidence 3333333333333333333333444455566666776665
No 359
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=44.86 E-value=1.7e+02 Score=23.79 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhc
Q 019366 252 SVKLALQKSLNAELKSQFEALY-------KHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVL 317 (342)
Q Consensus 252 e~eLAlqK~~~eELrk~~~eL~-------~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~ 317 (342)
..-++.|.....-|.++..+|. .-+..+..+..+--.++...+..|.-....|..|+..|...-|.
T Consensus 14 ~~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~~yP~ 86 (88)
T PF10241_consen 14 DEILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAKQYPE 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344444444444444444444 34445555666666778888888888888999999888877663
No 360
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.79 E-value=92 Score=30.75 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=14.8
Q ss_pred hhhchhhhHhhHHHHHHHHHHHHH
Q 019366 71 LQNCKDTLATCQLELEAAKSEIQK 94 (342)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~e~~k 94 (342)
|......++.++.+|..-+-++..
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~ 33 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEE 33 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666654
No 361
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=44.67 E-value=4.8e+02 Score=28.91 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 256 ALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 256 AlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
..++..+.+|++.+..+.+-+..+..++++.-..+..++.+|+.....+-
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555556666666666666666666666666655544443
No 362
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=44.62 E-value=2.4e+02 Score=25.43 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=50.3
Q ss_pred HHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH-----------------------HHHhhhhhHHHhhHHHHHHH
Q 019366 237 DEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALY-----------------------KHMDGLTDDVERSNEMVLML 293 (342)
Q Consensus 237 EELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~-----------------------~~l~eLdeEvE~lqstl~~L 293 (342)
.+..|.. .|++.|..+|..+|+..+-|.-...++. .+...|++.-|.+...|..|
T Consensus 23 N~Fsrl~--~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~l 100 (131)
T KOG1760|consen 23 NEFSRLN--SRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEEL 100 (131)
T ss_pred HHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 3778888888888888777766655542 23344555566666677777
Q ss_pred HHHHHHhHHHHHHHHHHHhhh
Q 019366 294 REKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 294 QqeL~~~~~~l~~lk~eL~~~ 314 (342)
.++++....++..||..|=.|
T Consensus 101 es~~e~I~~~m~~LK~~LYaK 121 (131)
T KOG1760|consen 101 ESELESISARMDELKKVLYAK 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888887776443
No 363
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.56 E-value=70 Score=33.99 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=19.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVER 285 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~ 285 (342)
++.+||.+|+..+...+.|.+...++..-|.+++.++.+
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~ 115 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAA 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 445555555555555554444444444444444444333
No 364
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=44.56 E-value=5.8e+02 Score=29.89 Aligned_cols=184 Identities=17% Similarity=0.181 Sum_probs=103.5
Q ss_pred chhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 019366 74 CKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQ 153 (342)
Q Consensus 74 ~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQ 153 (342)
-+..|..+++-|+.-+-++.+-++ |.+|+-.-.-.-..-+..+|+.+...--+|.+--.+ -+..-++++..-..|.
T Consensus 927 KDqei~EleailekQNca~eeakq---n~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le-~~eDea~aRh~kefE~ 1002 (1424)
T KOG4572|consen 927 KDQEIEELEAILEKQNCAHEEAKQ---NDEISEEDKKKLHAEIDAELEKEFAELIELEQKALE-CKEDEAFARHEKEFEI 1002 (1424)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHhh---cCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 344566777777777766666655 555442211111111222222221111111110000 1224678888888888
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHH-HHHHHHHHHHhhhhcccC-CCchhhHHHHHHHHH
Q 019366 154 EIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE-KDKKVKELEENIAAVSFT-ANSKMGKALMAKCKT 231 (342)
Q Consensus 154 Eiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee-~~~klk~aq~eL~A~kFt-PqS~~GKrLMAKCR~ 231 (342)
++.+.++.+.+++-. --+|+.++..+.++|.. ++.++ ..+++.|.+-+ |.-++--++.+
T Consensus 1003 ~mrdhrselEe~kKe-------------~eaiineiee~eaeIiQekE~el--~e~efka~d~Sd~r~kie~efAa---- 1063 (1424)
T KOG4572|consen 1003 EMRDHRSELEEKKKE-------------LEAIINEIEELEAEIIQEKEGEL--IEDEFKALDESDPRAKIEDEFAA---- 1063 (1424)
T ss_pred HHHHhHhhHHHHHHH-------------HHHHHHHHHHHHHHHHhcccchH--HHHHhhhccccCcchhHHHHHHH----
Confidence 888888888887544 13678888888777654 23322 33455565533 22233333333
Q ss_pred HHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019366 232 LQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLT 280 (342)
Q Consensus 232 LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLd 280 (342)
..-|-+++.--.-+.|.+++++.-.+.--..+.|+...+.+.+.|..-+
T Consensus 1064 ~eaemdeik~~~~edrakqkei~k~L~ehelenLrnEieklndkIkdnn 1112 (1424)
T KOG4572|consen 1064 IEAEMDEIKDGKCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIKDNN 1112 (1424)
T ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3455566655556667788888888877778888888888877776543
No 365
>smart00338 BRLZ basic region leucin zipper.
Probab=44.53 E-value=1.3e+02 Score=22.50 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 267 SQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 267 k~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
....+|+.-+..|..+.+.|.+.|..|..++.....++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666677777777777777776666554
No 366
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=44.37 E-value=45 Score=27.54 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 019366 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTA 217 (342)
Q Consensus 184 AVNlef~rLR~eLee~~~klk~aq~eL~A~kFtP 217 (342)
.|..++..|-..+.....+...++.++..++-..
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l 55 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQL 55 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3677777777777777777777777776666443
No 367
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=44.31 E-value=5.4e+02 Score=29.49 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=3.3
Q ss_pred cccCCCc
Q 019366 213 VSFTANS 219 (342)
Q Consensus 213 ~kFtPqS 219 (342)
-.|+..-
T Consensus 761 ~~f~~~~ 767 (1047)
T PRK10246 761 SVFDDQQ 767 (1047)
T ss_pred CCCCCHH
Confidence 3564443
No 368
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=44.23 E-value=2.8e+02 Score=28.25 Aligned_cols=93 Identities=19% Similarity=0.312 Sum_probs=63.0
Q ss_pred hhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHH
Q 019366 114 RLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLK 193 (342)
Q Consensus 114 ~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR 193 (342)
+.+.++-+.|+++-...++.+++..+-..-+...|+.-...+.++...+..++.. .++.-...+..|+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~------------~~~e~~~~i~~L~ 74 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS------------LSAEERELIEKLE 74 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------------CChhHHHHHHHHH
Confidence 4466777788888888888888888888888887777777777777766555332 3344455566777
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCchhhHHH
Q 019366 194 NLVEEKDKKVKELEENIAAVSFTANSKMGKAL 225 (342)
Q Consensus 194 ~eLee~~~klk~aq~eL~A~kFtPqS~~GKrL 225 (342)
..+.+.+..+.+-. .|-|.. .|..|
T Consensus 75 ~~Ik~r~~~l~DmE------a~LPkk-NGlyL 99 (330)
T PF07851_consen 75 EDIKERRCQLFDME------AFLPKK-NGLYL 99 (330)
T ss_pred HHHHHHHhhHHHHH------hhCCCC-CCccc
Confidence 77776666665444 666776 66554
No 369
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=44.16 E-value=2e+02 Score=29.87 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 225 LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
||=...+|..+.+|+-.++. +-++-.++++.++++.--++.+||-+..+.++.|
T Consensus 145 l~YqVDtLKD~LeE~eeqLa--------------------------eS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 145 LIYQVDTLKDVLEEQEEQLA--------------------------ESYRENEEKSKELERQKHMCSVLQHKMEELKEGL 198 (405)
T ss_pred eeeeHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777776654333 2344556678888999999999988877777776
Q ss_pred HHHHHHHhhhhh
Q 019366 305 EKLKHELRQKSV 316 (342)
Q Consensus 305 ~~lk~eL~~~~~ 316 (342)
..-...|+..-.
T Consensus 199 ~QRdeliee~Gl 210 (405)
T KOG2010|consen 199 RQRDELIEEHGL 210 (405)
T ss_pred HHHHHHHHHcCe
Confidence 655555555443
No 370
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.15 E-value=4.8e+02 Score=28.85 Aligned_cols=36 Identities=6% Similarity=0.198 Sum_probs=28.5
Q ss_pred HHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 175 QARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 175 qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL 210 (342)
.+..+++||.....|..|-.+.-.+++++..++.+.
T Consensus 409 ~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaev 444 (654)
T KOG4809|consen 409 IEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEV 444 (654)
T ss_pred hhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889888888888888888888877776543
No 371
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=44.11 E-value=3e+02 Score=26.46 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=85.5
Q ss_pred HhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHH
Q 019366 120 LQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK 199 (342)
Q Consensus 120 l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~ 199 (342)
|..+....--|-+-.....|||..=..-=+.+|+|+.-++.+=..- ..+.+ .... .-...|+..|.++
T Consensus 2 vekv~~LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~---~~~~~-~~~~--------~~~~~L~~~LrEk 69 (205)
T PF12240_consen 2 VEKVERLQQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQG---NSSGS-SSPS--------NNASNLKELLREK 69 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCCCC-CCCC--------CcHHHHHHHHHHH
Confidence 3334444444555556778898777666677888888776654331 11111 0000 2346788889999
Q ss_pred HHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019366 200 DKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGL 279 (342)
Q Consensus 200 ~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eL 279 (342)
+.++=.+..++.-|. ++-+-.|-.=|-.++....... ++..+-|+-..+... .+++++++++ --.
T Consensus 70 EErILaLEad~~kWE--------qkYLEEs~mrq~a~dAaa~aa~----~rdttiI~~s~~~s~--~~s~r~~eel-~~a 134 (205)
T PF12240_consen 70 EERILALEADMTKWE--------QKYLEESAMRQFAMDAAATAAA----QRDTTIINHSPSESY--NSSLREEEEL-HMA 134 (205)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhHH----HHHHHHHhcCCCCCC--CccccchHHH-HHh
Confidence 999999999998885 1223334333333333322111 122211111111110 1112111111 112
Q ss_pred hhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 280 TDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 280 deEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
+--+-.|...|..|..+|.+++--|.-||...+.
T Consensus 135 ~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~~ 168 (205)
T PF12240_consen 135 NRKCQEMENRIKALHAQIAEKDAMIKVLQQRSRK 168 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2223345556777888888888777655554443
No 372
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=44.03 E-value=64 Score=27.80 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhh
Q 019366 292 MLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 292 ~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
-.|+++.+++.+|.+.+.+|...
T Consensus 67 e~q~ki~~~~~kV~ere~eL~eA 89 (115)
T PF06476_consen 67 ERQQKIAEKQQKVAEREAELKEA 89 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543
No 373
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.82 E-value=1.8e+02 Score=23.78 Aligned_cols=28 Identities=25% Similarity=0.257 Sum_probs=17.7
Q ss_pred hhhhchhhhHhhHHHHHHHHHHHHHHHH
Q 019366 70 SLQNCKDTLATCQLELEAAKSEIQKWHS 97 (342)
Q Consensus 70 ~l~~~~~~~~~~~~~l~~a~~e~~kW~~ 97 (342)
.|+..-..+.....+++.++.+|..-..
T Consensus 17 ~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00890 17 ALQQQLQKLEAQLTEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455566666777777777777664
No 374
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.32 E-value=1.7e+02 Score=23.38 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=12.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALY 273 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~ 273 (342)
||+.+=-.+++++-.+++|+.....+.
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444444444444444444444444444
No 375
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=43.28 E-value=52 Score=34.94 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhh
Q 019366 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (342)
Q Consensus 186 Nlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~G 222 (342)
|...+.||++|-....|++.+++...++-|--=|.+|
T Consensus 82 ~d~~~~~~qqiAn~~lKv~~l~da~~t~~~kGLsITG 118 (514)
T PF11336_consen 82 NDDATEMRQQIANAQLKVESLEDAAETGGFKGLSITG 118 (514)
T ss_pred hHHHHHHHHHHHhhhhhHHHHhhHHhcCCcccceEee
Confidence 7889999999999999999999999998887666655
No 376
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.22 E-value=1.6e+02 Score=24.09 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 264 ELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 264 ELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
+|..+..+|+.-+.--+.-++++|..|..+|.-+.+...++..|-+.+...++
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44556667777777777778888888888888888888888888887777665
No 377
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=42.97 E-value=3.1e+02 Score=26.31 Aligned_cols=114 Identities=18% Similarity=0.287 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccC-CCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFT-ANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ 268 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFt-PqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~ 268 (342)
..++..+...+.++..+...+....+. |.+ +....++...++...+.. .+...+...+.....+...
T Consensus 161 ~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~--------~l~~~~~~Ld~l~~rL~~----~~~~~l~~~~~~L~~l~~~ 228 (319)
T PF02601_consen 161 RAMRNRLQRKRQRLNQLAKRLQLQSRRLPER--------KLEQQQQRLDELKQRLKQ----AIQQKLQRKRQRLQNLSNR 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 344555555556666665555544433 333 344444444444444432 2333333333333333322
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
+.-- .....++.....++..-..++..+...+..+..+...|...+|
T Consensus 229 l~~~-~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~L~~lsP 275 (319)
T PF02601_consen 229 LKRQ-SPQQKLNQQRQQLQRLQKRLQRKLSQKRQRLERLEARLEALSP 275 (319)
T ss_pred hhhh-hhhhHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHcCCH
Confidence 1110 1111111222222222334455566888899999999999998
No 378
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.97 E-value=1.8e+02 Score=29.65 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=46.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
||..-|.-|+ ++.+.+...|....+-+.++.+.....+..|..+..+|++.-.+++..|.+++.+..
T Consensus 256 kI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 256 KIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444333 355666666777777777777777777777888888888888888888888777755
No 379
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=42.91 E-value=2.7e+02 Score=25.50 Aligned_cols=93 Identities=25% Similarity=0.398 Sum_probs=48.2
Q ss_pred HHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHH
Q 019366 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAA 143 (342)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnv 143 (342)
+-++|.-|+.|...++.|+...+++...++.....+.. .. .|.+| +.++++..++..-..+..++..+......
T Consensus 24 L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~--m~-~gg~~---f~i~~~~~~~~~r~~l~~~~~~~e~~~a~ 97 (158)
T PF09486_consen 24 LAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDA--MM-TGGAP---FSIDEYLALRRYRDVLEERVRAAEAELAA 97 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HH-cCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666666666664444 12 22222 22555555665555555555544444444
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 019366 144 FIVTFAKREQEIAELKSAV 162 (342)
Q Consensus 144 ll~rLA~KEQEiqel~s~l 162 (342)
+-..+..++.+|..+...|
T Consensus 98 l~~~l~~~~~~ia~~~raI 116 (158)
T PF09486_consen 98 LRQALRAAEDEIAATRRAI 116 (158)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 380
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.90 E-value=1.1e+02 Score=26.08 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
++|.+..+.|...+..+..++.. ++.++......+.++..
T Consensus 97 ~~l~~~~~~l~~~~~~l~~~l~~-------~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 97 EILDKRKEELEKALEKLEEALQK-------LASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333 44444444444444443
No 381
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.86 E-value=2.8e+02 Score=27.41 Aligned_cols=71 Identities=17% Similarity=0.347 Sum_probs=56.3
Q ss_pred hHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHH
Q 019366 116 VINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNL 195 (342)
Q Consensus 116 v~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~e 195 (342)
|...+..+...=.++++++.....-|+.|-..|-.|-+|+......+..|... -||.-.+|.+|..+
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v-------------RPAfmdEyEklE~E 233 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSV-------------RPAFMDEYEKLEEE 233 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ChHHHHHHHHHHHH
Confidence 33444556666677788888888999999999999999999999988887654 48888899998888
Q ss_pred HHHH
Q 019366 196 VEEK 199 (342)
Q Consensus 196 Lee~ 199 (342)
|+..
T Consensus 234 L~~l 237 (267)
T PF10234_consen 234 LQKL 237 (267)
T ss_pred HHHH
Confidence 7654
No 382
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.83 E-value=2.3e+02 Score=27.46 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 253 VKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 253 ~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
+=|---.+|=+-+|....||++-+..+..++..++..|--|+...-+++..+-.|+.
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667788888888888888777777777777777777777777777777766653
No 383
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=42.71 E-value=4.5e+02 Score=28.05 Aligned_cols=83 Identities=10% Similarity=0.177 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 230 KTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 230 R~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
....+|-.+|.+... -++.++.+++......-.+-....-.+..+...+.++----+.|..-..+|..++++..+|+.
T Consensus 196 ~~ieQ~~~~la~r~~--a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leq 273 (499)
T COG4372 196 AQIEQEAQNLATRAN--AAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQ 273 (499)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444222 345555555554444444444444445555555444444444444444444445555555554
Q ss_pred HHhhh
Q 019366 310 ELRQK 314 (342)
Q Consensus 310 eL~~~ 314 (342)
|..+.
T Consensus 274 eva~l 278 (499)
T COG4372 274 EVAQL 278 (499)
T ss_pred HHHHH
Confidence 44443
No 384
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=42.52 E-value=4.7e+02 Score=28.26 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=69.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHhcCCc---hHHHHHhhh-Chh-----hHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCC
Q 019366 148 FAKREQEIAELKSAVRDLKAQLKPP---LMQARRLLL-DPA-----IHEEFRRLKNLVEEKDKKVKELEENIAAV-SFTA 217 (342)
Q Consensus 148 LA~KEQEiqel~s~l~dlk~~~~ps---s~qlR~~Ll-DPA-----VNlef~rLR~eLee~~~klk~aq~eL~A~-kFtP 217 (342)
|-..||+++++.-.|...|..+... ...|++.+- -|- -..+-...|+||+..+..|+.|.-+|.+= ...|
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~nS~wsa 333 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEANSSWSA 333 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 3445777777777777666654332 233333322 111 12333455578888888888888887543 2222
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 218 NSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALY 273 (342)
Q Consensus 218 qS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~ 273 (342)
--.. +.++..---+.-.+.+..| +.-|.++...|+-++-|+|...-+.
T Consensus 334 P~aL-Q~wLq~T~E~E~q~~~kkr-------qnaekql~~Ake~~eklkKKrssv~ 381 (575)
T KOG4403|consen 334 PLAL-QKWLQLTHEVEVQYYNKKR-------QNAEKQLKEAKEMAEKLKKKRSSVF 381 (575)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHhhcchh
Confidence 2222 3344444445556666666 6668889999999999998766554
No 385
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=42.51 E-value=4.3e+02 Score=27.83 Aligned_cols=130 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred HhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----cCCCchhhHHHHHHHHHHHHHHHHHhhhhh--------
Q 019366 178 RLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS-----FTANSKMGKALMAKCKTLQEENDEIGRQNE-------- 244 (342)
Q Consensus 178 ~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~k-----FtPqS~~GKrLMAKCR~LqeENEELGr~ls-------- 244 (342)
+-|-+-+-..-+.--+.+++.++.++..++..|.++. |+|+. .+..+|.-.-.|+.+.-++-..+.
T Consensus 233 N~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~-~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p 311 (434)
T PRK15178 233 NTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKE-TITAIYQLIAGFETQLAEAKAEYAQLMVNGLD 311 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q ss_pred -cccchhhhHHHHHHHHHHHHHHHHHH------HHHHHH---hhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 245 -EGETHQLSVKLALQKSLNAELKSQFE------ALYKHM---DGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 245 -eGria~Le~eLAlqK~~~eELrk~~~------eL~~~l---~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
.-+|..|..+|+..+.++...|...- .+...+ +.|.-|.+--+..+..-..-|+.++.+-.|-+
T Consensus 312 ~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~ 385 (434)
T PRK15178 312 QNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRER 385 (434)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 386
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=42.34 E-value=2.3e+02 Score=25.21 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=13.5
Q ss_pred HHhhhhcccCCCc--hhhHHHHHHHHHHH
Q 019366 207 EENIAAVSFTANS--KMGKALMAKCKTLQ 233 (342)
Q Consensus 207 q~eL~A~kFtPqS--~~GKrLMAKCR~Lq 233 (342)
+.+.+-+=|+|+. ...+.+++-.+.|-
T Consensus 30 qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls 58 (131)
T PF04859_consen 30 QLQQAHSPYDPDKIQAADEAVVSELRRLS 58 (131)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666 33445555544443
No 387
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=42.32 E-value=49 Score=32.17 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 225 LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
.+.|...|.+.-..|.. .|+.||.+++.|+.+.+.+.+....-... +++.+..+.....-.+-|++=..+|
T Consensus 178 a~eki~~Lr~~y~~l~~-----~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~----~~~~~~~~~~~~~~de~I~rEeeEI 248 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSN-----SIAYLEAEVAEQEAQLERMNRSSSDSSSD----DEESEESSEDSVDTDEDIRREEEEI 248 (259)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCccccccc----ccccccccccchhHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhh
Q 019366 305 EKLKHELRQKS 315 (342)
Q Consensus 305 ~~lk~eL~~~~ 315 (342)
..|+.++.+++
T Consensus 249 reLE~k~~~Lq 259 (259)
T PF08657_consen 249 RELERKKRELQ 259 (259)
T ss_pred HHHHHHHHhcC
No 388
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=42.23 E-value=53 Score=25.90 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=29.1
Q ss_pred HhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 019366 276 MDGLTDDVERSNEMVLMLREKLEENDHELEKLKHE 310 (342)
Q Consensus 276 l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~e 310 (342)
+-..-+|||.+-++|.-|+.++.+.+.+.+.|+.-
T Consensus 9 m~AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 9 MYAVREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp GGT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567899999999999999999999998888764
No 389
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.78 E-value=1.8e+02 Score=26.46 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 267 SQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 267 k~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
..|.+++.-|..|..+++.+...|..+..+|...+..|..+=
T Consensus 22 ~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 22 QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777888888888888888888888888888888887654
No 390
>PF15259 GTSE1_N: G-2 and S-phase expressed 1
Probab=41.77 E-value=19 Score=32.59 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=19.4
Q ss_pred CCCCC-CCCCCCCCCCCCCccCCCCCCCCCCCCCccccccccccccc
Q 019366 6 HLDDD-DDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSK 51 (342)
Q Consensus 6 ~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (342)
.+.|+ |||++-++.+ +..+.+|||+-.|++-+.+-+
T Consensus 4 lL~DEkfDFDlslSps----------ss~e~eeddeVf~gPv~hker 40 (141)
T PF15259_consen 4 LLADEKFDFDLSLSPS----------SSNEEEEDDEVFFGPVGHKER 40 (141)
T ss_pred cccccccccCcccCCc----------ccCCcccCcceeecCCCcccc
Confidence 44444 9998877733 112224445555666655544
No 391
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=41.70 E-value=1.1e+02 Score=28.36 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.0
Q ss_pred hHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC
Q 019366 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (342)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~ 101 (342)
++..+......+..++++++.|+.++++++..+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~ 96 (322)
T TIGR01730 62 YQLALQAALAQLAAAEAQLELAQRSFERAERLVKR 96 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45566667788999999999999999999997765
No 392
>PRK11519 tyrosine kinase; Provisional
Probab=41.41 E-value=5e+02 Score=28.29 Aligned_cols=111 Identities=13% Similarity=0.231 Sum_probs=61.7
Q ss_pred CCCChhhhHHHHhhhHhhHHHHHHHHHHHHhH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCc--hHHHHHhhh
Q 019366 109 TSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK-----EAAFIVTFAKREQEIAELKSAVRDLKAQLKPP--LMQARRLLL 181 (342)
Q Consensus 109 ~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrR-----Envll~rLA~KEQEiqel~s~l~dlk~~~~ps--s~qlR~~Ll 181 (342)
++++|.....-+..+ .+.=+++++ +.+.+ =..+-.++....+++.+....+.++|..+.-- ..+++.
T Consensus 235 ~~~dP~~Aa~iaN~l--~~~Yi~~~~-~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~--- 308 (719)
T PRK11519 235 TGEDREQIRDILNSI--TRNYLEQNI-ERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKA--- 308 (719)
T ss_pred EcCCHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---
Confidence 457887766655555 333333333 23322 25677888888899999999999998886431 111111
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHH
Q 019366 182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQ 233 (342)
Q Consensus 182 DPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~Lq 233 (342)
....+..++..+.+.+.++. +|+ -.|+|.++.=+.|.++-+.|+
T Consensus 309 ---~l~~~~~l~~ql~~l~~~~~----~l~-~~y~~~hP~v~~l~~~~~~L~ 352 (719)
T PRK11519 309 ---VLDSMVNIDAQLNELTFKEA----EIS-KLYTKEHPAYRTLLEKRKALE 352 (719)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH----HHH-HHhcccCcHHHHHHHHHHHHH
Confidence 11112334444444333333 232 259999987776655544333
No 393
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.08 E-value=6.3e+02 Score=29.29 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=64.8
Q ss_pred hhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHh-------ccC-cCCCCCCCCCChhhhHHHHhhhHhhHHHHH
Q 019366 60 ATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSS-------FQN-ELFIPPGTSPEPRLVINYLQTLKSSEEMLK 131 (342)
Q Consensus 60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~-------f~~-e~~i~a~~~~~p~lv~~~l~~lk~sE~~Lk 131 (342)
--|||-++--.+++|+.....++.+-+.-+.+++-..+. |.. ...++.-.++-.. ..+.....+.-.+.+.
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~-~~q~~e~~~t~~eel~ 740 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRD-LLQGAEASKTQNEELN 740 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh-HHhHHHhccCChHHHH
Confidence 458999999999999999999999888888887666331 211 2224333333222 2233334455556666
Q ss_pred HHHHHHHhHH---HHHHHHHHhHHHHHHHHHHHHHH
Q 019366 132 EQLEKAKKKE---AAFIVTFAKREQEIAELKSAVRD 164 (342)
Q Consensus 132 eQl~eakrRE---nvll~rLA~KEQEiqel~s~l~d 164 (342)
-++.+.++=+ ..+...|..+.+=++.+++...+
T Consensus 741 a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~ 776 (970)
T KOG0946|consen 741 AALSENKKLENDQELLTKELNKKNADIESFKATQRS 776 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 6666666655 45555666667777777766654
No 394
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=41.07 E-value=3.2e+02 Score=27.06 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 265 LKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 265 Lrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
|+.....+..-+..+...++.+.+.-..|..++++++.+++|.+.-|+....
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555555555566777777777777777766555443
No 395
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=40.47 E-value=3e+02 Score=25.42 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=9.7
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHhH
Q 019366 278 GLTDDVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 278 eLdeEvE~lqstl~~LQqeL~~~~ 301 (342)
.|.+|+.++...+..++.+|..+.
T Consensus 99 ~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 99 ALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334443333333444444433
No 396
>PF14182 YgaB: YgaB-like protein
Probab=40.29 E-value=1.5e+02 Score=24.55 Aligned_cols=50 Identities=18% Similarity=0.430 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 019366 226 MAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVER 285 (342)
Q Consensus 226 MAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~ 285 (342)
|.||.....|..+|.+. +++......+..+|+.+++++++.+.-+++|=+
T Consensus 23 lERCqeIE~eL~~l~~e----------a~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI~ 72 (79)
T PF14182_consen 23 LERCQEIEKELKELERE----------AELHSIQEEISQMKKELKEIQRVFEKQTEEVIR 72 (79)
T ss_pred HHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777663 334445566666777777777777666666533
No 397
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.25 E-value=4.7e+02 Score=27.58 Aligned_cols=110 Identities=17% Similarity=0.266 Sum_probs=76.2
Q ss_pred HHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhc---------ccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 203 VKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE---------GETHQLSVKLALQKSLNAELKSQFEALY 273 (342)
Q Consensus 203 lk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lse---------Gria~Le~eLAlqK~~~eELrk~~~eL~ 273 (342)
+..+...|..+ |+|.- .-+..+|...+.+.+++...+.. .++..++..++..+....-...+..++.
T Consensus 253 l~~~~~~l~~~-~d~~~---~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~ 328 (563)
T TIGR00634 253 LGEAQLALASV-IDGSL---RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVL 328 (563)
T ss_pred HHHHHHHHHHh-hhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 33444444444 54442 34556666666666666665543 4567777777766665555555677888
Q ss_pred HHHhhhhhHHHhhH---HHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 274 KHMDGLTDDVERSN---EMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 274 ~~l~eLdeEvE~lq---stl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
.+..++..+++.+. ..+-.|++++.+.+.++..+...|.+.+-
T Consensus 329 ~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 329 EYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877654 45999999999999999999999988755
No 398
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=40.04 E-value=2.6e+02 Score=24.57 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HhhHHHHHHHHHHHHHhH
Q 019366 223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDV-ERSNEMVLMLREKLEEND 301 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEv-E~lqstl~~LQqeL~~~~ 301 (342)
..|...-+.|..++..|.. ...........+.+.+..|......+..++ ..+++-+--|--=|....
T Consensus 30 ~~l~~~~~~l~~e~~~l~~------------~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle 97 (136)
T PF04871_consen 30 SSLEQENKRLEAEEKELKE------------AEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLE 97 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Confidence 3444455555555444443 222333333444444444444444444333 333333333333345555
Q ss_pred HHHHHHHHHHhhhhhcc
Q 019366 302 HELEKLKHELRQKSVLE 318 (342)
Q Consensus 302 ~~l~~lk~eL~~~~~~~ 318 (342)
..+.+|+..|......+
T Consensus 98 ~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 98 EKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 66777888887776644
No 399
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=40.00 E-value=1.5e+02 Score=32.73 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCC
Q 019366 264 ELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLEEDKNDSV 325 (342)
Q Consensus 264 ELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~~~~~~~~~ 325 (342)
++++-...|++-|...++++-.-|.-+.-|.+++.+.+..+++|++||.+...+.+..-.++
T Consensus 21 ~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~~~p~~~~~~ 82 (732)
T KOG0614|consen 21 ELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRSVLPQKAQSA 82 (732)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcCCcccccCc
Confidence 34444555666666666666666666777888888888999999999988877544444333
No 400
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=39.83 E-value=2.8e+02 Score=28.44 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchhhHHHH
Q 019366 195 LVEEKDKKVKELEENIAAVSFTANSKMGKALM 226 (342)
Q Consensus 195 eLee~~~klk~aq~eL~A~kFtPqS~~GKrLM 226 (342)
.|+....+++++..+|+.-.|-.+...-+.++
T Consensus 24 ~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ 55 (364)
T TIGR00020 24 DPEKKKARLEELEKEMEDPNFWNDQERAQAVI 55 (364)
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHH
Confidence 35566777778888887777766664443343
No 401
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=39.55 E-value=5.9e+02 Score=28.51 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=29.5
Q ss_pred hhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC
Q 019366 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (342)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~ 101 (342)
...+..+.+.+..-...++.+...|+.....+..|......
T Consensus 402 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 402 SAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777778888888888877777666554444
No 402
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=39.48 E-value=2.7e+02 Score=24.67 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 185 VNlef~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
+..++..|+.+|......+..++.+|..++
T Consensus 89 ~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k 118 (177)
T PF13870_consen 89 LSEELERLKQELKDREEELAKLREELYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544433
No 403
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=39.11 E-value=1.9e+02 Score=25.88 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhHH---HHHHHHHHHHHhHHHHH
Q 019366 258 QKSLNAELKSQFEALYKHMDGLTDDVERSNE---MVLMLREKLEENDHELE 305 (342)
Q Consensus 258 qK~~~eELrk~~~eL~~~l~eLdeEvE~lqs---tl~~LQqeL~~~~~~l~ 305 (342)
.|+....+..++..+..-|...+..++.+.. -+--||.++..++..+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4455555555555555556666666666555 25555555555555555
No 404
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=38.79 E-value=6.9e+02 Score=29.11 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 287 NEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 287 qstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
+..+..|-..+.+++.+++.+...+
T Consensus 525 ~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 525 NNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444555555554444433
No 405
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=38.73 E-value=3.3e+02 Score=26.44 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=18.4
Q ss_pred hhcccCCCchhhHHHHHHHHHHH
Q 019366 211 AAVSFTANSKMGKALMAKCKTLQ 233 (342)
Q Consensus 211 ~A~kFtPqS~~GKrLMAKCR~Lq 233 (342)
.+..|+|+|..|+.|..=+..+.
T Consensus 69 ~~~~lg~~s~~g~aL~~~gea~~ 91 (246)
T cd07618 69 GSAQLGEESLIGKMLDTCGDAEN 91 (246)
T ss_pred HHhcCCCCccHHHHHHHHHHHHH
Confidence 57899999999999986665443
No 406
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.63 E-value=2.1e+02 Score=24.76 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 270 EALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 270 ~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
.+|++-+..++..+..|..++..|++++...-.+..+|+-|-+..+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888888888888888888888888777777666655
No 407
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=38.54 E-value=1.9e+02 Score=23.17 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
.+...+|.+|.......-.+..-+...|..|.+++.....++++|
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666666666666666666666666776666666666665
No 408
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=38.30 E-value=2.1e+02 Score=27.22 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH--HHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 236 NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEM--VLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 236 NEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqst--l~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
|+.+=++++..-.+.|.++++.....+-.|..++.. ++.|+-.|+++ +-.+|.+++.++.++.-+...|..
T Consensus 69 ~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~-------veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 69 DQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSY-------VEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred cHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555667777776666666555555444 44555555554 456677777777776666555554
Q ss_pred h
Q 019366 314 K 314 (342)
Q Consensus 314 ~ 314 (342)
.
T Consensus 142 ~ 142 (201)
T KOG4603|consen 142 I 142 (201)
T ss_pred H
Confidence 3
No 409
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=38.27 E-value=2.3e+02 Score=23.38 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHH---HHHHHHHHHhh
Q 019366 252 SVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDH---ELEKLKHELRQ 313 (342)
Q Consensus 252 e~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~---~l~~lk~eL~~ 313 (342)
-.++.+....|.-.-..|.++.+.+.++...++.++..--.|+..+.+.+. +++.|..-...
T Consensus 20 ~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~ 84 (99)
T PF10046_consen 20 NEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYE 84 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667788888888888888888888888888888876666666555555 77777654443
No 410
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=38.03 E-value=1.4e+02 Score=28.65 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=17.4
Q ss_pred hhcccCCCchhhHHHHHHHHHHH
Q 019366 211 AAVSFTANSKMGKALMAKCKTLQ 233 (342)
Q Consensus 211 ~A~kFtPqS~~GKrLMAKCR~Lq 233 (342)
.+..|+|+|..|+.|+.=++...
T Consensus 69 ~g~~l~~~s~lg~~L~~~g~a~~ 91 (244)
T cd07595 69 SSKELPDDSLLGKVLKLCGEAQN 91 (244)
T ss_pred HHHhcCCCChHHHHHHHHHHHHH
Confidence 46678999999998886665543
No 411
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.97 E-value=56 Score=24.59 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 019366 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS 219 (342)
Q Consensus 185 VNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS 219 (342)
++..+..|.+++...+.+.+.++.++..++-+|+-
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ 56 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDY 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 34556677777777777778888888877656654
No 412
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.94 E-value=2.9e+02 Score=24.42 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 232 LQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 232 LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
...-++||.+......|...-+.+=...++.+ ...+|.+-++-|+..+..++.+-..++.++.+.+..|.
T Consensus 39 ~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~----~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 39 IEKALEELEKLDEDAPVYKKVGNLLVKVSKEE----AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHhcCCcccHHHHHhhhHHhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566665555556665555544443332 24455555555555555555555556666655555554
No 413
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=37.87 E-value=4.7e+02 Score=26.95 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHH
Q 019366 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKT 231 (342)
Q Consensus 152 EQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~ 231 (342)
--|+++|-+.+..+|.-.... ....+.+-++..++..||+.|....- + .+..-.-||++..-|+|+...-.
T Consensus 100 l~Ev~eL~~eve~ik~dk~~a---~Eek~t~~l~A~vla~lkk~l~al~l--e----q~lGk~atp~~~~vk~ll~q~E~ 170 (371)
T KOG3958|consen 100 LHEVQELTTEVEKIKTDKESA---TEEKLTPVLLAKVLAALKKQLVALHL--E----QLLGKDATPDGALVKRLLLQLEA 170 (371)
T ss_pred HHHHHHHHHHHHHHhhchhhh---hhhhcchHHHHHHHHHHHHHHHHHHH--H----HHhCCCCCCcHHHHHHHHHHHHh
Confidence 358889998888887663222 24555666777788888887776543 2 23344448999998888854322
Q ss_pred HHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----------------hhhHHHhhHHHHHHHHH
Q 019366 232 LQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDG----------------LTDDVERSNEMVLMLRE 295 (342)
Q Consensus 232 LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~e----------------LdeEvE~lqstl~~LQq 295 (342)
-. -=|+... +-..+.. -.+...+.+|.+++.+|+.+|.- +=+-||-+|..+..|+
T Consensus 171 ~k----~sg~~t~---~p~p~~d-~s~~akVA~LE~Rlt~lE~vvg~~~d~~~~lsa~~~~a~vletVe~L~~k~s~l~- 241 (371)
T KOG3958|consen 171 TK----NSGKTTG---TPRPEQD-FSQAAKVAELEKRLTELETVVGCDQDAQNPLSAGLQGACVLETVELLQAKVSALD- 241 (371)
T ss_pred hc----ccCcccC---CCCCCcc-HHHHHHHHHHHHHHHHHHHHHcCCccccCchhhccCCchHHHHHHHHHHHHHhhC-
Confidence 21 1144322 2234544 34567788999999999998876 2344555555555443
Q ss_pred HHHHhHHHHHHHHHHHhhhhhc
Q 019366 296 KLEENDHELEKLKHELRQKSVL 317 (342)
Q Consensus 296 eL~~~~~~l~~lk~eL~~~~~~ 317 (342)
+...++.=+||+..|-+.+..
T Consensus 242 -~~~ld~vEqRL~s~lgK~~~I 262 (371)
T KOG3958|consen 242 -LAVLDQVEQRLQSVLGKVNEI 262 (371)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777776653
No 414
>PRK14011 prefoldin subunit alpha; Provisional
Probab=37.79 E-value=1.6e+02 Score=26.41 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 262 NAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 262 ~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
.+.+++..++|.+-...+++.++..+..+..++.+|..+-.++
T Consensus 90 ~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~ 132 (144)
T PRK14011 90 IEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAI 132 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555666666664443
No 415
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=37.28 E-value=70 Score=31.86 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=19.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDD 282 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeE 282 (342)
||.+||-..-..+.++-+|-.....|.+++.++-.-
T Consensus 228 risrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~ 263 (279)
T KOG0837|consen 228 RISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQK 263 (279)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 566666666566655555555555555544444333
No 416
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=37.07 E-value=3.1e+02 Score=24.51 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 257 LQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 257 lqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
...+...++......+-.++..++.+++.....+.-|+..-+.....+.+|+.-|..
T Consensus 30 tLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 30 TLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777888899999999999999999999999999999999999999976653
No 417
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.83 E-value=2.3e+02 Score=23.07 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHh----HHHHHHHHHHHhhhh
Q 019366 268 QFEALYKHMDGLTDDVERSNEMVLMLREKLEEN----DHELEKLKHELRQKS 315 (342)
Q Consensus 268 ~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~----~~~l~~lk~eL~~~~ 315 (342)
...+++.-+..--.|+..+..+|+.|...-.+. ..+|.+|+.+|+++.
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444455556666677788888888887665444 357889999998764
No 418
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.66 E-value=1.8e+02 Score=31.12 Aligned_cols=69 Identities=23% Similarity=0.273 Sum_probs=31.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh-hHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVER-SNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~-lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
|++.+++.+++...+.|+.|+++.+.|..--..+|..+.. +++.--.++++.++.+.++.+++..|.++
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544433333333221 11112234444444444444554444444
No 419
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=36.63 E-value=26 Score=29.65 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcc
Q 019366 251 LSVKLALQKSLNAELKSQF-EALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLE 318 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~-~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~~ 318 (342)
++.......+-+++|-.++ ++-++.|.....+...+...+..|..+|..+...++.++.+|.....+.
T Consensus 13 ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 13 AEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555444 7888888887777777888888888888888888888887777666643
No 420
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.32 E-value=3.6e+02 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchh
Q 019366 195 LVEEKDKKVKELEENIAAVSFTANSKM 221 (342)
Q Consensus 195 eLee~~~klk~aq~eL~A~kFtPqS~~ 221 (342)
-|.+++.=-+.+.-.-+||.|-=.|.+
T Consensus 29 QL~AFeEvg~~L~RTsAACGFRWNs~V 55 (161)
T TIGR02894 29 QLSAFEEVGRALNRTAAACGFRWNAYV 55 (161)
T ss_pred HHHHHHHHHHHHcccHHHhcchHHHHH
Confidence 344444434444444466766666633
No 421
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=36.13 E-value=7.6e+02 Score=28.84 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=55.5
Q ss_pred hhhchhhhHhhHHHHHHHHHHHHHHHHhccC---cCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhH
Q 019366 71 LQNCKDTLATCQLELEAAKSEIQKWHSSFQN---ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK 140 (342)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~---e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrR 140 (342)
....|..||.+|.-|.+-+.-.-+|.++++. -.-+|-...-+...+..++..++.-++.+-+++.+...|
T Consensus 392 vD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~k 464 (1480)
T COG3096 392 VDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQK 464 (1480)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3456777888888888888777788877665 223677778888999999999999999999999887766
No 422
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.97 E-value=1.4e+02 Score=21.87 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019366 250 QLSVKLALQKSLNAELKSQFEALYKHMDGL 279 (342)
Q Consensus 250 ~Le~eLAlqK~~~eELrk~~~eL~~~l~eL 279 (342)
+||.+-..+|..-+.|+..++-|..-...|
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L 31 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKL 31 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665566666566555555444433333
No 423
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=35.95 E-value=4.5e+02 Score=26.14 Aligned_cols=198 Identities=12% Similarity=0.145 Sum_probs=111.5
Q ss_pred hchhhhHhhH--HHHHHHHHHHHHHHHhccCcCCCCCCCCC--ChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHH
Q 019366 73 NCKDTLATCQ--LELEAAKSEIQKWHSSFQNELFIPPGTSP--EPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTF 148 (342)
Q Consensus 73 ~~~~~~~~~~--~~l~~a~~e~~kW~~~f~~e~~i~a~~~~--~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rL 148 (342)
++++.|-.-. ..++.|+.++...=..+.=|..|.+...+ -|..+..+...++...
T Consensus 13 erk~~lVr~~~~~~le~~~~~l~~~L~slnLP~sl~~l~~~~~lP~sl~~~~~~v~~~~--------------------- 71 (353)
T cd09236 13 DRKDRLVNESIIDELEELTNRAHSTLRSLNLPGSLQALEKPLGLPPSLLRHAEEIRQED--------------------- 71 (353)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCcHHHHHhhCCCCCCHHHHHHHHHHHhCC---------------------
Confidence 3444444333 68899999998888877666666544443 4555544443333211
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccCCCchhhHHHH
Q 019366 149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA--AVSFTANSKMGKALM 226 (342)
Q Consensus 149 A~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~--A~kFtPqS~~GKrLM 226 (342)
.+..+...+.++..... .+...|..-...|..=..+.+.++..-- -|+-+|.+..+..|.
T Consensus 72 -----g~~~l~~~l~~l~~l~~-------------~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~ 133 (353)
T cd09236 72 -----GLERIRASLDDVARLAA-------------SDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDSHEANPKLY 133 (353)
T ss_pred -----CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHH
Confidence 12222222222211100 0111233444556666666777777665 599999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HHHhhHHHHHHHHHHHHHhH
Q 019366 227 AKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTD-----DVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 227 AKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLde-----EvE~lqstl~~LQqeL~~~~ 301 (342)
.+++....=.+.-+. +. ..+...+..-+..+..|.+...+|..++=.... .+..-=..|..+-.+|...+
T Consensus 134 ~~~~~~~~~L~~A~~---sD--~~v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~ 208 (353)
T cd09236 134 TQAAEYEGYLKQAGA---SD--ELVRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLE 208 (353)
T ss_pred HHHHHHHHHHHHHHh---hH--HHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 999988865554433 11 455566666666666777767777666654322 22222333444555666666
Q ss_pred HHHHHHHHHHhhh
Q 019366 302 HELEKLKHELRQK 314 (342)
Q Consensus 302 ~~l~~lk~eL~~~ 314 (342)
.+-..+-.+|..+
T Consensus 209 ~eR~~~~~~Lk~k 221 (353)
T cd09236 209 SRRRRKVERARTK 221 (353)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666544
No 424
>PHA03332 membrane glycoprotein; Provisional
Probab=35.58 E-value=5.5e+02 Score=30.58 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=75.5
Q ss_pred hChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHH-----------------HHHHHHHHHHHHhhhh
Q 019366 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMA-----------------KCKTLQEENDEIGRQN 243 (342)
Q Consensus 181 lDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMA-----------------KCR~LqeENEELGr~l 243 (342)
+|-.|..-+..|-.+-+-.+.+++..-.-+..|-||-++-.-+|+.. --.-|+.-|+-|--..
T Consensus 801 mD~~vR~si~gL~~eFeysneryk~t~sv~dlw~~t~~~~rprRF~G~viag~AIGvATAAqiTA~vAL~~A~QAL~va~ 880 (1328)
T PHA03332 801 MDVSVRVSIAGLLLEFEYSNERYKNTLSVLDLWHETVKMFAPRRFGGSVMAGDAIGLSAAAFTMASAALNAATQALAVAT 880 (1328)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 57777777888888888888888888888899999999743333211 1233444444222110
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHH----HHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 244 EEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVL----MLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 244 seGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~----~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
.. + -.+......+.+|+.+..+++.-|..+..-+-.+..+|. .||..|...+..+..|+.++-.+=
T Consensus 881 ~~--~----~~llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~ 950 (1328)
T PHA03332 881 LY--V----NQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRF 950 (1328)
T ss_pred hh--h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHH
Confidence 00 0 001112233445666666666666666666666665553 356666677777777777665543
No 425
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=35.34 E-value=4.7e+02 Score=26.16 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 288 EMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 288 stl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
..+..++.++...+.++..++..+.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888888888887775
No 426
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=35.23 E-value=96 Score=23.70 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=27.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHhccCcCCCC
Q 019366 76 DTLATCQLELEAAKSEIQKWHSSFQNELFIP 106 (342)
Q Consensus 76 ~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~ 106 (342)
..++.++.+++-...+|.+-..-+.|+.|+.
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~ 34 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVE 34 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 4567888999999999999999999999983
No 427
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.18 E-value=95 Score=23.32 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=8.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhh
Q 019366 293 LREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 293 LQqeL~~~~~~l~~lk~eL~~ 313 (342)
|+.++++.+.+...|+.+++.
T Consensus 29 l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 29 LQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 428
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=34.90 E-value=5.5e+02 Score=26.83 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=41.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHH------------------HHHHHHHHHHHhHHHHHH
Q 019366 245 EGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNE------------------MVLMLREKLEENDHELEK 306 (342)
Q Consensus 245 eGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqs------------------tl~~LQqeL~~~~~~l~~ 306 (342)
-|+++.||.-++-.++.+--|.-+++++-.-+.+.+++.-.++. |+.....=|...+..|..
T Consensus 126 k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~ 205 (401)
T PF06785_consen 126 KGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGK 205 (401)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH
Confidence 46677777777777777666666666655555555555444432 233333344455555666
Q ss_pred HHHHHhhhhh
Q 019366 307 LKHELRQKSV 316 (342)
Q Consensus 307 lk~eL~~~~~ 316 (342)
|...++-...
T Consensus 206 LEsKVqDLm~ 215 (401)
T PF06785_consen 206 LESKVQDLMY 215 (401)
T ss_pred HHHHHHHHHH
Confidence 6666665433
No 429
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=34.50 E-value=2.1e+02 Score=24.40 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHH
Q 019366 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264 (342)
Q Consensus 185 VNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eE 264 (342)
|-.+-.-||..|-+.....+.+..+|+-.+|-|....+ .+++- -| ....|+-+.|..+|-+.+.++.+
T Consensus 13 vEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~---~~~~~--------~g-~~~~~~~~~l~~eLk~a~~qi~~ 80 (96)
T PF11365_consen 13 VEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS---LAKLS--------EG-GSPSGREAELQEELKLAREQINE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cccCC--------CC-CCCccccHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999998886643222 00100 01 11234456666666666666666
Q ss_pred HHHHHHHH
Q 019366 265 LKSQFEAL 272 (342)
Q Consensus 265 Lrk~~~eL 272 (342)
|....-+|
T Consensus 81 Ls~kv~eL 88 (96)
T PF11365_consen 81 LSGKVMEL 88 (96)
T ss_pred HhhHHHHH
Confidence 66655444
No 430
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=33.94 E-value=3.2e+02 Score=26.03 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=35.3
Q ss_pred HHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 237 DEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 237 EELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
+||-. .-|+|+.|+..+-..+..+.-+...+++|...+- +|.||+.|--|..+.+.-...+..++.
T Consensus 79 eel~~--ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 79 EELQV--LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 3456666766666666655555555555554431 344555555555555555554444443
No 431
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.90 E-value=5.2e+02 Score=26.25 Aligned_cols=79 Identities=30% Similarity=0.436 Sum_probs=49.5
Q ss_pred HHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHH--
Q 019366 117 INYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKN-- 194 (342)
Q Consensus 117 ~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~-- 194 (342)
++||+.|+.-|--+++=-. +=+|. ..||-.+|-||.+|++||.-+|.- -|-.+--|...
T Consensus 57 EQYLTPLQQKEV~iRHLka--kLkes--~~~l~dRetEI~eLksQL~RMrED---------------WIEEECHRVEAQL 117 (305)
T PF15290_consen 57 EQYLTPLQQKEVCIRHLKA--KLKES--ENRLHDRETEIDELKSQLARMRED---------------WIEEECHRVEAQL 117 (305)
T ss_pred HHhcChHHHHHHHHHHHHH--HHHHH--HHHHHhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH
Confidence 6999999999876554322 22232 346777899999999999776432 23333333322
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 019366 195 LVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 195 eLee~~~klk~aq~eL~A~k 214 (342)
-|+++++++++++.-+..++
T Consensus 118 ALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666777777766655554
No 432
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=33.89 E-value=2.5e+02 Score=26.53 Aligned_cols=56 Identities=20% Similarity=0.425 Sum_probs=44.3
Q ss_pred hhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHH
Q 019366 72 QNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEE 128 (342)
Q Consensus 72 ~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~ 128 (342)
=+|-+.|...|+--++..-..+-|..+|..-=.+ ++..++|.-=..+|..|..--.
T Consensus 36 mDCAdRL~~~qAR~~A~~~~~~~W~~aFkq~ILL-~~A~~T~~ERR~~~~~l~~y~~ 91 (179)
T PF13942_consen 36 MDCADRLSPAQARAQAKRWPDDSWQDAFKQSILL-ANAEPTPAERRQMVDRLNSYSL 91 (179)
T ss_pred ccHHHhcCHHHHHHHHhcCCcCcHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhh
Confidence 3799999999999999999999999999874334 7777888766677766665444
No 433
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.89 E-value=5.2e+02 Score=26.19 Aligned_cols=114 Identities=12% Similarity=0.276 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhH-HHHHHHHHHhHHHHHHHHH
Q 019366 81 CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK-EAAFIVTFAKREQEIAELK 159 (342)
Q Consensus 81 ~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrR-Envll~rLA~KEQEiqel~ 159 (342)
.+..|...+..++.+.+.+. ...|... | ...++++.....| ...+..+|..+.+.+..+.
T Consensus 280 ~~~~L~~~~~~L~~L~~rL~---------~~~P~~~---l-------~~~~q~L~~l~~rL~~a~~~~L~~~~~~L~~l~ 340 (438)
T PRK00286 280 MRRRLEQKRQRLDQLARRLK---------FQSPERL---L-------AQQQQRLDRLQQRLQRALERRLRLAKQRLERLS 340 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhc---------cCCHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666667777666443 1233322 1 2234455555555 5667777888888888777
Q ss_pred HHHHHHHHhcCCc-hHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 019366 160 SAVRDLKAQLKPP-LMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS 219 (342)
Q Consensus 160 s~l~dlk~~~~ps-s~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS 219 (342)
..+..+ .|. ...-.+.-+|-.-+.+-..++..+...+.+++.+...|.+. +|..
T Consensus 341 ~rL~~l----sP~~~L~r~~qrL~~L~~rL~~a~~~~L~~~~~rL~~l~~rL~~l--sP~~ 395 (438)
T PRK00286 341 QRLQQQ----NPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQLEAL--SPLA 395 (438)
T ss_pred HHHhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChh
Confidence 776432 222 22223455555666667778888888889999998888875 4544
No 434
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=33.86 E-value=90 Score=24.54 Aligned_cols=14 Identities=7% Similarity=-0.078 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 019366 255 LALQKSLNAELKSQ 268 (342)
Q Consensus 255 LAlqK~~~eELrk~ 268 (342)
+.....-+.+|+.+
T Consensus 5 v~s~e~~i~FLq~e 18 (60)
T PF14916_consen 5 VQSLEKSILFLQQE 18 (60)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 435
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=33.81 E-value=4.1e+02 Score=24.99 Aligned_cols=73 Identities=23% Similarity=0.439 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhhhhc---ccchhhhHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHhhHHH-------HHHH
Q 019366 227 AKCKTLQEENDEIGRQNEE---GETHQLSVKLALQKSL---NAELKSQFEALYKHMDGLTDDVERSNEM-------VLML 293 (342)
Q Consensus 227 AKCR~LqeENEELGr~lse---Gria~Le~eLAlqK~~---~eELrk~~~eL~~~l~eLdeEvE~lqst-------l~~L 293 (342)
+||..|....+.|.+|+.. .|..-|+..+.+++.. +.++....+. ++-|+.+--++..| |..|
T Consensus 71 tRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klek----Le~LE~E~~rLt~~Q~~ae~Ki~~L 146 (178)
T PF14073_consen 71 TRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEK----LEKLEKEYLRLTATQSLAETKIKEL 146 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999976 4556677777766663 3334444333 33444455554433 5566
Q ss_pred HHHHHHhHHH
Q 019366 294 REKLEENDHE 303 (342)
Q Consensus 294 QqeL~~~~~~ 303 (342)
.+.|..-.++
T Consensus 147 E~KL~eEehq 156 (178)
T PF14073_consen 147 EEKLQEEEHQ 156 (178)
T ss_pred HHHHHHHHHH
Confidence 6666554444
No 436
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.66 E-value=8.2e+02 Score=28.48 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhhcccCCCchhhHHHHHHHHH--HHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019366 199 KDKKVKELEENIAAVSFTANSKMGKALMAKCKT--LQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHM 276 (342)
Q Consensus 199 ~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~--LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l 276 (342)
...+.++++-+|.+.+|.-+.-.||--=-+|+. -.+|. ..+.....+..+.+.+|..+++|+...+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~i------------e~~~~q~e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEI------------EEVTKQRELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHH------------HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777776666666655555543 22232 3333344455566666666677777777
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 277 DGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 277 ~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
..|--|--.++..+.+-|.-......+...|..-...++.
T Consensus 503 ~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~ 542 (1118)
T KOG1029|consen 503 QKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKEL 542 (1118)
T ss_pred HhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHH
Confidence 7777676677777766666665555555555544444443
No 437
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=33.53 E-value=3.2e+02 Score=23.62 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHH-------HHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLM-------LREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~-------LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
|-.+-+..|.++.-||+..-+-..-...|.+++..--..|.- |.=...++-..++.||.+|.....
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555566666555544444444444444444434444 444456677788888888885433
No 438
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=33.49 E-value=2.7e+02 Score=28.41 Aligned_cols=33 Identities=24% Similarity=0.530 Sum_probs=26.7
Q ss_pred hhhC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019366 179 LLLD-PAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (342)
Q Consensus 179 ~LlD-PAVNlef~rLR~eLee~~~klk~aq~eL~ 211 (342)
+-+| |.+...+..|+.+++....++..++..|.
T Consensus 325 vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~ 358 (451)
T PF03961_consen 325 VGVDRPELKEKLEELEEELEELKEELEKLKKNLK 358 (451)
T ss_pred EecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567 99999999999999988888887777743
No 439
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=33.42 E-value=9.4e+02 Score=29.07 Aligned_cols=108 Identities=19% Similarity=0.273 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 019366 192 LKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEA 271 (342)
Q Consensus 192 LR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~e 271 (342)
+...+...+++++.++..++- +.-.+.+.+.|=++-. ...++..++.++.....++...+ ...
T Consensus 976 ~~e~l~~~~~~~~~~~~~l~~-------------~~~~er~l~dnl~~~~--l~~q~~e~~re~~~ld~Qi~~~~--~~~ 1038 (1294)
T KOG0962|consen 976 SEEHLEERDNEVNEIKQKIRN-------------QYQRERNLKDNLTLRN--LERKLKELERELSELDKQILEAD--IKS 1038 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhH--HHH
Confidence 334455566666666555431 2223333333333322 22244444555444444444443 111
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 272 LYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 272 L~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
...-..-|.+..+.+++.-.-+..+..+.+.++.+++.+|.+...
T Consensus 1039 ~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~ 1083 (1294)
T KOG0962|consen 1039 VKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDF 1083 (1294)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 111122234444455555555555555556666666666654444
No 440
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=33.40 E-value=1.5e+02 Score=31.90 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 256 ALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 256 AlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
+..+.-++|||.+..||.++|+.|..+--+ .|..|..+|.+-+.--.+|++|++..
T Consensus 565 ~~~k~s~delr~qi~el~~ive~lk~~~~k---el~kl~~dleeek~mr~~lemei~~l 620 (627)
T KOG4348|consen 565 DVKKNSLDELRAQIIELLCIVEALKKDHGK---ELEKLRKDLEEEKTMRSNLEMEIEKL 620 (627)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHhhHHHH
Confidence 567788999999999999999998776433 56667777776666666666666543
No 441
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.09 E-value=2.7e+02 Score=23.33 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHH
Q 019366 251 LSVKLALQKSLNAELKSQFEAL--YKHMDGLTDDVERSNEMVLMLREKLEENDHELEK 306 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL--~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~ 306 (342)
|...+......+..+...++.| .+-+-.|.-++.+|...+..+..+|+.....+..
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444 4444444444444444444444444444444443
No 442
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.00 E-value=1.9e+02 Score=29.20 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=19.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019366 245 EGETHQLSVKLALQKSLNAELKSQFEALYKH 275 (342)
Q Consensus 245 eGria~Le~eLAlqK~~~eELrk~~~eL~~~ 275 (342)
+.|+|.=+++|.-+|++..-||.-.=|-++|
T Consensus 81 ~~~l~dRetEI~eLksQL~RMrEDWIEEECH 111 (305)
T PF15290_consen 81 ENRLHDRETEIDELKSQLARMREDWIEEECH 111 (305)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777766554333333
No 443
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.57 E-value=2.6e+02 Score=28.76 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhCh----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDP----AIHEEFRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDP----AVNlef~rLR~eLee~~~klk~aq~eL 210 (342)
+-.|..+.++..++..++..||...+--+.+......+. ++-.+...|++++.+.+.+++.+.+++
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555433332222212221 233445667777777777777777666
No 444
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=32.24 E-value=7.9e+02 Score=27.86 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=18.5
Q ss_pred HhhhhcccCCCchhhHHHHHHHHHHHH
Q 019366 208 ENIAAVSFTANSKMGKALMAKCKTLQE 234 (342)
Q Consensus 208 ~eL~A~kFtPqS~~GKrLMAKCR~Lqe 234 (342)
++=-+.|-.|+-+.+.-.-.||+.|..
T Consensus 283 EeEL~~Kvqp~d~Le~e~~~K~q~LL~ 309 (739)
T PF07111_consen 283 EEELCRKVQPSDPLEPEFSRKCQQLLS 309 (739)
T ss_pred HHHHhccCCCCCCCCchhHHHHHHHHH
Confidence 333577888888888777777766553
No 445
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=32.20 E-value=4e+02 Score=24.51 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 253 VKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 253 ~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
..+++...+.+.+..+..+|...+..+..+|.-- .|++-..|+.+.-+.+..|..-+.+.++
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666677777777777788888777777652 3555556666666666666666666544
No 446
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=32.13 E-value=4.5e+02 Score=25.02 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 238 EIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 238 ELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
||-|.-.+...+.++..|+........|+.-+.-....-......-...+..+..|..+-...+.+|..|+..+..++
T Consensus 104 eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 104 EIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666665555555544433333333333333333333344444444444555555554444443
No 447
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=31.70 E-value=2.5e+02 Score=21.88 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHH
Q 019366 267 SQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHE 303 (342)
Q Consensus 267 k~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~ 303 (342)
.....|..-+..|..||.-|..-+..-++|-.+..+.
T Consensus 10 ~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333
No 448
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=31.49 E-value=1.5e+02 Score=24.62 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHH
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNEMVLMLREK 296 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqe 296 (342)
+.|.+..+.+.+.+..+..++..++..+-.+++.
T Consensus 89 ~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 89 EFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444334333
No 449
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.47 E-value=7.8e+02 Score=27.52 Aligned_cols=112 Identities=25% Similarity=0.303 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHH
Q 019366 149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAK 228 (342)
Q Consensus 149 A~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAK 228 (342)
+.+.|+|..+.+.++++ .+.|-||.++.. .|+..-|
T Consensus 64 ~~L~~~ia~~eael~~l-----------~s~l~~~~~~~~---------------------------~~~k~e~------ 99 (660)
T KOG4302|consen 64 ARLLQEIAVIEAELNDL-----------CSALGEPSIIGE---------------------------ISDKIEG------ 99 (660)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHhCCcccccc---------------------------cccccCc------
Q ss_pred HHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------hhHHHhhHHHHHHH
Q 019366 229 CKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGL---------------TDDVERSNEMVLML 293 (342)
Q Consensus 229 CR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eL---------------deEvE~lqstl~~L 293 (342)
+|.++..-|-. -+-.|..+..--+....+|..+++.|-..|-+- ++.+|.++..|..|
T Consensus 100 --tLke~l~~l~~-----~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L 172 (660)
T KOG4302|consen 100 --TLKEQLESLKP-----YLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNEL 172 (660)
T ss_pred --cHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 019366 294 REKLEENDHELEKLKHEL 311 (342)
Q Consensus 294 QqeL~~~~~~l~~lk~eL 311 (342)
|++-..--..+-.+..++
T Consensus 173 ~~ek~~Rlekv~~~~~~I 190 (660)
T KOG4302|consen 173 QKEKSDRLEKVLELKEEI 190 (660)
T ss_pred HHHHHHHHHHHHHHHHHH
No 450
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=31.37 E-value=1.6e+02 Score=29.73 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 264 ELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 264 ELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
.|.+...++++-|.+++..++.+...+..+..++......+..|.+-.+..+.
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNi 193 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNI 193 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCce
Confidence 45566666666666666666666666666666666666666666665554444
No 451
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=31.27 E-value=3e+02 Score=24.32 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=38.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
|...+..++..-....+ .++.+.+|...+.. |+.|+.+|.-.|.-|.++-..+++|.+-|-.
T Consensus 58 iKevd~~~~~l~~~~~e---rqk~~~k~ae~L~k-v~els~~L~~~~~lL~~~v~~ie~LN~~LP~ 119 (131)
T PF10158_consen 58 IKEVDQEIAKLLQQMVE---RQKRFAKFAEQLEK-VNELSQQLSRCQSLLNQTVPSIETLNEILPE 119 (131)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Confidence 33444444444444443 34444555555544 7888888888888888888888888776643
No 452
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.19 E-value=1.5e+02 Score=28.65 Aligned_cols=57 Identities=28% Similarity=0.363 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH-HHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 259 KSLNAELKSQFEALYKHMDGLTDDVERSNEMV-LMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 259 K~~~eELrk~~~eL~~~l~eLdeEvE~lqstl-~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
+..+.+.++.++|.++.|.+||.+|-.+--.+ ..+-..|+..++.+.+++.++..-.
T Consensus 35 k~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 35 KQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTT 92 (220)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33678888999999999999999998876553 4566778888888888888886554
No 453
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=30.89 E-value=5.9e+02 Score=25.93 Aligned_cols=151 Identities=25% Similarity=0.320 Sum_probs=76.0
Q ss_pred HHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHH
Q 019366 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE 198 (342)
Q Consensus 119 ~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee 198 (342)
++-.|+..-+-|-+||.++..+ +.+++-++...+.+|++--. . |+-
T Consensus 138 d~S~lkd~ne~LsQqLskaesK-------~nsLe~elh~trdaLrEKtL--------------------~-------lE~ 183 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESK-------FNSLEIELHHTRDALREKTL--------------------A-------LES 183 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------------------H-------HHH
Confidence 4556666677777777776644 44556666666666655311 1 223
Q ss_pred HHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019366 199 KDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNE-EGETHQLSVKLALQKSLNAELKSQFEALYKHMD 277 (342)
Q Consensus 199 ~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~ls-eGria~Le~eLAlqK~~~eELrk~~~eL~~~l~ 277 (342)
....+.+++-.+.-+.-..++--| .-|..+|++-+ +.|+++|.++-.+++.+.+...+.-..-++.|.
T Consensus 184 ~QrdL~Qtq~q~KE~e~m~qne~~-----------kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vi 252 (305)
T PF14915_consen 184 VQRDLSQTQCQIKEIEHMYQNEQD-----------KVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVI 252 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444333333322222222 12344555443 457777777777777777666555443333443
Q ss_pred hhhhHH--------HhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 278 GLTDDV--------ERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 278 eLdeEv--------E~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
..-... -..-..++.|.+..+..-.+-.-|+..+.+-
T Consensus 253 niQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qy 297 (305)
T PF14915_consen 253 NIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQY 297 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333222 1112245555665555555555555554443
No 454
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=30.71 E-value=5.9e+02 Score=25.92 Aligned_cols=25 Identities=8% Similarity=0.313 Sum_probs=14.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 292 MLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 292 ~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
..+++|.....++..++..|...+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655555444
No 455
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=30.49 E-value=8.6e+02 Score=27.70 Aligned_cols=180 Identities=18% Similarity=0.184 Sum_probs=108.3
Q ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHH
Q 019366 122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDK 201 (342)
Q Consensus 122 ~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~ 201 (342)
.|+..-..|..-......++.+=..=-..+.-|-=++-.....||.++. .|+.+|-+.|--.||.+|=.+|+++-.
T Consensus 431 ~Lr~a~~rL~~~~~~~~~~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQe----~L~eAL~~gAs~eEI~rLm~eLR~A~~ 506 (820)
T PF13779_consen 431 GLRSARRRLERARTDEALREVADLLWDLALRIEDGDLSDAERRLRAAQE----ALREALERGASDEEIARLMQELREAMQ 506 (820)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHH----HHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5666666666545555556644444444444444556666666666643 456666667777888887777665543
Q ss_pred -HHHHHHHhhhh---cccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019366 202 -KVKELEENIAA---VSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMD 277 (342)
Q Consensus 202 -klk~aq~eL~A---~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~ 277 (342)
.+.++-..... -.-.|.. .+-.-+..-+-|+.=...|-+.+.+|+...-..-|+....-.+-|+..... ..--.
T Consensus 507 ~ym~~LAeq~~~~~~~~~~p~~-~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~~~~q-~~~~~ 584 (820)
T PF13779_consen 507 DYMQALAEQAQRNPQQQDQPPD-QGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQNAQPQ-QQQQQ 584 (820)
T ss_pred HHHHHHHHHhHhCcccccCccc-chhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCC-chhhH
Confidence 33333333321 1122211 122233345556666666667777888888777777777777777665544 34556
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 278 GLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 278 eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
++.+.++.|+.++-.+|+=+.++.......
T Consensus 585 ~~~q~m~~L~dl~r~Qq~L~D~tfr~~q~q 614 (820)
T PF13779_consen 585 EMQQAMEELGDLLRRQQQLMDETFRQLQEQ 614 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 667778888888888887777777666543
No 456
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=30.31 E-value=9.4e+02 Score=28.11 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHh-------hHHHHHHHHHHHHHhHHHHHHHHHH
Q 019366 262 NAELKSQFEALYKHMDGLTDDVER-------SNEMVLMLREKLEENDHELEKLKHE 310 (342)
Q Consensus 262 ~eELrk~~~eL~~~l~eLdeEvE~-------lqstl~~LQqeL~~~~~~l~~lk~e 310 (342)
+.++.+...+|.+-|+++..+..+ .-..+..|.+||..+..++++|+-.
T Consensus 461 ~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 461 IDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555666666555555444 2233444555555555555555433
No 457
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=30.01 E-value=2.2e+02 Score=27.00 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHH----hhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 263 AELKSQFEALYKHMDGLTDDVE----RSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE----~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
.-+|++++.|.+|-+.--.+.+ .-...|.-+...|....++|.-|+.=|..|.
T Consensus 131 ~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~ 187 (195)
T PF12761_consen 131 ALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKK 187 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888766555543 1112244455555555555555555554443
No 458
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=29.92 E-value=2.8e+02 Score=21.88 Aligned_cols=97 Identities=18% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHH-HHHHhHHHHH
Q 019366 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQL-EKAKKKEAAF 144 (342)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl-~eakrREnvl 144 (342)
.|+..|......+..++..+..-..-+..|.. .+..-...=-......+.-|.+.+..|-+++ .....+...+
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~------~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l 77 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEE------NAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVL 77 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
...+...++.+..+...+......
T Consensus 78 ~~q~~~l~~~l~~l~~~~~~~e~~ 101 (127)
T smart00502 78 EQQLESLTQKQEKLSHAINFTEEA 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 459
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=29.57 E-value=5e+02 Score=24.68 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=28.0
Q ss_pred hHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC
Q 019366 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (342)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~ 101 (342)
+...+...+..+...++.|..|+.++++|+..|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~ 129 (327)
T TIGR02971 95 LFKDVAAQQATLNRLEAELETAQREVDRYRSLFRD 129 (327)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44456666778888899999999999999997765
No 460
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=29.57 E-value=4.8e+02 Score=28.28 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHhhHHHHHHHHHHHHHh
Q 019366 228 KCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGL-------TDDVERSNEMVLMLREKLEEN 300 (342)
Q Consensus 228 KCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eL-------deEvE~lqstl~~LQqeL~~~ 300 (342)
|+.....|.+-|-+.+ +..-...+...++|+.....+...-++| +..+-.|.+.|..|..+|.+.
T Consensus 435 Ka~~f~~Ec~aL~~rL--------~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q 506 (518)
T PF10212_consen 435 KAVHFYAECRALQKRL--------ESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554432 2222233334444444444444444444 345566666677777777777
Q ss_pred HHHHHHHH
Q 019366 301 DHELEKLK 308 (342)
Q Consensus 301 ~~~l~~lk 308 (342)
..+|+.||
T Consensus 507 ~eeI~~LK 514 (518)
T PF10212_consen 507 REEIQTLK 514 (518)
T ss_pred HHHHHHHh
Confidence 77777666
No 461
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.53 E-value=1.7e+02 Score=22.31 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
.+|+.+++.....+.-+.+.+..=.-+-....+=|+.-...+..++.++......++.|
T Consensus 7 ~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444443333332222222223334444444445555555555554443
No 462
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=29.50 E-value=5.3e+02 Score=24.99 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=42.6
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCC-hhhhHHHHhhhHhhHHHHHH
Q 019366 75 KDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPE-PRLVINYLQTLKSSEEMLKE 132 (342)
Q Consensus 75 ~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~-p~lv~~~l~~lk~sE~~Lke 132 (342)
+.+-.....+|+.|..-+.++...|.+...-+.+.+.. +..+.+.|..++.-+.=|+-
T Consensus 8 ~~t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ 66 (281)
T PF12018_consen 8 PATTEHIDTELEEAQELCYRYTAVLEKQSQSPQMESELPPELLKEELYNRRQYEIFLRI 66 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 44556677899999999999999999976544444444 46677888777777765543
No 463
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=29.39 E-value=1.2e+02 Score=22.66 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHH
Q 019366 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK 199 (342)
Q Consensus 152 EQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~ 199 (342)
+.+|+.--.-++.||+.-++. ..+||+|+.++ .|+..+...
T Consensus 2 ~~~I~~QGekVR~LKa~ka~k------~~i~~eV~~LL-~LK~~~k~~ 42 (45)
T cd00939 2 EKEVAEQGNKVRKLKASKADK------SVWQPEVNKLL-DLKKQLALA 42 (45)
T ss_pred hHHHHHHHHHHHHHHhccCcH------HHHHHHHHHHH-HHHHHHHHh
Confidence 466777778899999885433 34999999874 677766543
No 464
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=29.38 E-value=1.7e+02 Score=23.76 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 262 NAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 262 ~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
.+.+.+..+.+.+.+..+...+..++.++.+++..+++
T Consensus 79 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 79 IEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444444444444444444444444444443
No 465
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.95 E-value=1e+03 Score=28.14 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=21.3
Q ss_pred HhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHH
Q 019366 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHS 97 (342)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~ 97 (342)
..||+..+..-+++++|+..|..-+.++++...
T Consensus 184 ~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~k 216 (1072)
T KOG0979|consen 184 MDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEK 216 (1072)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456666666666667777666666666666554
No 466
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=28.85 E-value=1.6e+02 Score=31.80 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=48.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKH---------MDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~---------l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
|+..|..++.+.+...+.|.+-+..|.+. ...=+.+....+.++..|.+++++-+-+++.+|++|+.-
T Consensus 411 ~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~le~~ 487 (543)
T COG1315 411 RLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEELEVV 487 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555556666666665555555553 223346778889999999999999999999999999865
No 467
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=28.64 E-value=3.2e+02 Score=22.13 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHH----------HHH
Q 019366 226 MAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLM----------LRE 295 (342)
Q Consensus 226 MAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~----------LQq 295 (342)
|.+++.|+.....+..... -+.++.....+|...|..+..+++.+..+|.+ =..
T Consensus 14 l~~l~~~~~~~~~~~~~~~----------------~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~ 77 (97)
T PF09177_consen 14 LDRLESLYRRWQRLRSDTS----------------SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEE 77 (97)
T ss_dssp HHHHHHHHHHHHHHTTHCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHH
T ss_pred HHHHHHHHHHHHHhcccCC----------------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHH
Confidence 4566666666555554333 22333334444444444444444444444433 355
Q ss_pred HHHHhHHHHHHHHHHHh
Q 019366 296 KLEENDHELEKLKHELR 312 (342)
Q Consensus 296 eL~~~~~~l~~lk~eL~ 312 (342)
+|..-+.-+..++.++.
T Consensus 78 Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 78 EISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666554
No 468
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=28.61 E-value=1.8e+02 Score=25.13 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHH
Q 019366 226 MAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264 (342)
Q Consensus 226 MAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eE 264 (342)
-+|-..++.+.+.--..--..||+-|+.-|.-.+.+...
T Consensus 23 ~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd 61 (115)
T PF06476_consen 23 EAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTD 61 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCC
Confidence 345556666666666666666676676666665555433
No 469
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=28.54 E-value=4e+02 Score=29.62 Aligned_cols=49 Identities=27% Similarity=0.236 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
-+.++..++...++++.++ ...|-.|+.++.+.+.+-..|.+|+.....
T Consensus 13 k~~E~~~l~~~~~~lk~~~-----------------~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 13 KQKERQALKSSVEELKESH-----------------EEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666654 345666888888889999999988887766
No 470
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.42 E-value=7.8e+02 Score=26.58 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=8.6
Q ss_pred HHHHhHHH-HHHHHHHHHH
Q 019366 146 VTFAKREQ-EIAELKSAVR 163 (342)
Q Consensus 146 ~rLA~KEQ-Eiqel~s~l~ 163 (342)
.++...+| ++...+.++.
T Consensus 339 ~~~~e~~qsqlen~k~~~e 357 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYE 357 (493)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 44445555 4444444443
No 471
>PF10562 CaM_bdg_C0: Calmodulin-binding domain C0 of NMDA receptor NR1 subunit; InterPro: IPR018882 This is a very short highly conserved domain that is C-terminal to the cytosolic transmembrane region IV of the NMDA-receptor 1. It has been shown to bind Calmodulin-Calcium with high affinity. The ionotropic N-methyl-D-aspartate receptor (NMDAR) is a major source of calcium flux into neurons in the brain and plays a critical role in learning, memory, neural development, and synaptic plasticity. Calmodulin (CaM) regulates NMDARs by binding tightly to the C0 and C1 regions of their NR1 subunit. The conserved tryptophan is considered to be the anchor residue [].
Probab=28.34 E-value=69 Score=22.07 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 019366 82 QLELEAAKSEIQKWHSSF 99 (342)
Q Consensus 82 ~~~l~~a~~e~~kW~~~f 99 (342)
|-+++-|+..++||+-.+
T Consensus 11 qk~~elAr~a~dkWR~~i 28 (29)
T PF10562_consen 11 QKQLELARHAADKWRGNI 28 (29)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 567899999999999844
No 472
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.27 E-value=2.9e+02 Score=21.60 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 019366 251 LSVKLALQKSLNAELK 266 (342)
Q Consensus 251 Le~eLAlqK~~~eELr 266 (342)
|+.+|-......++|+
T Consensus 6 L~~EirakQ~~~eEL~ 21 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELT 21 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 473
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=28.22 E-value=4.2e+02 Score=24.10 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 187 EEFRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 187 lef~rLR~eLee~~~klk~aq~eL 210 (342)
.........++....+++.+...+
T Consensus 118 ~~~~~~~~~l~~l~~~l~~le~~~ 141 (292)
T PF01544_consen 118 EIVDDYFEVLEELEDELDELEDEL 141 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333445566666777777777777
No 474
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=28.20 E-value=4.6e+02 Score=23.89 Aligned_cols=88 Identities=22% Similarity=0.331 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH------HHHHHHHH---------HHHhhhhhHHHhh
Q 019366 222 GKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL------KSQFEALY---------KHMDGLTDDVERS 286 (342)
Q Consensus 222 GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eEL------rk~~~eL~---------~~l~eLdeEvE~l 286 (342)
-..+.++-..|.+|.+.|.. +|..||+++.-.+--++-| |+.|.=+. ++|=.|.+-.|++
T Consensus 17 q~~v~a~yn~~r~el~~ia~-----ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i 91 (140)
T KOG4098|consen 17 QQAVVAKYNALRSELQQIAS-----KITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENI 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHH
Confidence 34577788888888777765 6788888877666544443 45555443 3455677888999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 287 NEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 287 qstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
+.+|..|-++|.++..++.+.+..--++
T Consensus 92 ~~~i~~l~~qL~~k~kElnkfk~~hkIr 119 (140)
T KOG4098|consen 92 EKVIKKLTDQLVQKGKELNKFKKDHKIR 119 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccee
Confidence 9999999999999999999888654433
No 475
>PF03580 Herpes_UL14: Herpesvirus UL14-like protein; InterPro: IPR005207 This is a family of Herpesvirus proteins including UL14. UL14 protein is a minor component of the virion tegument [] and is expressed late in infection. UL14 protein can influence the intracellular localization patterns of a number of proteins belonging to the capsid or the DNA encapsidation machinery [].
Probab=28.08 E-value=4.8e+02 Score=23.97 Aligned_cols=100 Identities=16% Similarity=0.293 Sum_probs=69.8
Q ss_pred CCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHH
Q 019366 109 TSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEE 188 (342)
Q Consensus 109 ~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNle 188 (342)
.+.+|.+| ..+++.|+.+..++-|+... +|+..-+|.+.-++..|.+-..- -.....-+=+++|....=
T Consensus 31 ~~~dP~Fv-~aFtsAK~a~~~~~~~lrs~--------aRle~vrqk~~~I~~rVe~Q~a~--r~~L~~~RRyL~pdf~~~ 99 (149)
T PF03580_consen 31 DTDDPAFV-HAFTSAKEAHRDLERQLRSN--------ARLESVRQKARAIQARVEEQAAR--RDFLDANRRYLSPDFLDR 99 (149)
T ss_pred CCCChHHH-HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHhcChHHHHH
Confidence 34566655 88999999999999999654 56777788888877777654222 111223456899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhh
Q 019366 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (342)
Q Consensus 189 f~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~G 222 (342)
|-..-..+.+.+..|.++ +.++.-.|+.+.|
T Consensus 100 ld~~ed~l~e~Ed~L~ea---~~~~~~~~~~~~~ 130 (149)
T PF03580_consen 100 LDAEEDKLAEKEDRLEEA---LEEAWLGGDEPRI 130 (149)
T ss_pred HHHHHHHHHHhHHHHHHH---HHhhccCCCCCcc
Confidence 888888888888888888 3444444444433
No 476
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.70 E-value=5.5e+02 Score=27.61 Aligned_cols=88 Identities=26% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhHHHhhHHHHHHHHHHH
Q 019366 225 LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF-------EALYKHMDGLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~-------~eL~~~l~eLdeEvE~lqstl~~LQqeL 297 (342)
.|+|-..|+.||.++.-+..+--...|-+.+|-.|+..+.|-..- +.+-.-+...-..-.+|+.-|..-|++-
T Consensus 290 k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek 369 (502)
T KOG0982|consen 290 KKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK 369 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHhHHHHHHHHHHHh
Q 019366 298 EENDHELEKLKHELR 312 (342)
Q Consensus 298 ~~~~~~l~~lk~eL~ 312 (342)
..+..-++.|-.+|+
T Consensus 370 eatqELieelrkele 384 (502)
T KOG0982|consen 370 EATQELIEELRKELE 384 (502)
T ss_pred HHHHHHHHHHHHHHH
No 477
>smart00721 BAR BAR domain.
Probab=27.63 E-value=4.4e+02 Score=23.43 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=48.0
Q ss_pred cccCCCchhhHHHHHHHHHHHH---HHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHH-
Q 019366 213 VSFTANSKMGKALMAKCKTLQE---ENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNE- 288 (342)
Q Consensus 213 ~kFtPqS~~GKrLMAKCR~Lqe---ENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqs- 288 (342)
-.|.+.+..|+.|..-+..+.. -..++ ..+...-|.++-. ...+...++++..+.++....+.|.-..++..
T Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~---~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~ 160 (239)
T smart00721 85 EGLGADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLN---FLLGEFKEIKKARKKLERKLLDYDSARHKLKKA 160 (239)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHH---HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3466666777766654444332 12233 2233333333332 33455556666666666666666655544332
Q ss_pred ----------HHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 289 ----------MVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 289 ----------tl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
.+...+++++.++...+.+..+|.
T Consensus 161 ~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~ 194 (239)
T smart00721 161 KKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLV 194 (239)
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 233355666666665555554443
No 478
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=27.61 E-value=3.5e+02 Score=22.33 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=30.8
Q ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019366 124 KSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDL 165 (342)
Q Consensus 124 k~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dl 165 (342)
+..+...+.+|..+...-.....+|..+.....++...+...
T Consensus 12 ~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 53 (141)
T TIGR02473 12 EKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEK 53 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788887777778888888888888887776554
No 479
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=27.44 E-value=4.2e+02 Score=23.11 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=66.3
Q ss_pred hhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHH
Q 019366 180 LLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQK 259 (342)
Q Consensus 180 LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK 259 (342)
++||.+.-.-..|+.+-.++-.++...+.=. ..+.+-.+.+++.+..-|+.-+... ...+
T Consensus 13 Vldp~~~~~t~~Lk~ec~~F~~ki~~F~~iv-------------------~~~~~~~~~~A~~VE~eKlkAIG~R-N~l~ 72 (120)
T PF14931_consen 13 VLDPEKADQTQELKEECKEFVEKISEFQKIV-------------------KGFIEILDELAKRVENEKLKAIGAR-NLLK 72 (120)
T ss_pred ecChHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHhH-HHHH
Confidence 5899999999999999888888888665432 3445566667776666666555554 3445
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHH
Q 019366 260 SLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLR 294 (342)
Q Consensus 260 ~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQ 294 (342)
+..+.=......+...|.+-..+.||++...-.|+
T Consensus 73 s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~ 107 (120)
T PF14931_consen 73 SEAKQREAQQQQLQALIAEKKMELERLRSEYESLQ 107 (120)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777888888888888666655554
No 480
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.26 E-value=3e+02 Score=21.68 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=32.8
Q ss_pred chhhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC
Q 019366 59 VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (342)
Q Consensus 59 ~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~ 101 (342)
.|.|++--|.-.|..|+..+..+...=..=...|++=+..|+.
T Consensus 4 La~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~ 46 (92)
T PF14712_consen 4 LAEGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKE 46 (92)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888999999999887776666666667777776655
No 481
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=27.14 E-value=4.4e+02 Score=23.27 Aligned_cols=73 Identities=25% Similarity=0.267 Sum_probs=39.7
Q ss_pred hhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH
Q 019366 211 AAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMV 290 (342)
Q Consensus 211 ~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl 290 (342)
.+|.|...+ |-+|||....+-.-+=..+.+- ++.-...|.+=+.+.+|......++..+.+.-.-+|.+|+.|
T Consensus 45 ~~Va~~Q~~-----L~~riKevd~~~~~l~~~~~er--qk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN~~L 117 (131)
T PF10158_consen 45 EAVAFDQNA-----LAKRIKEVDQEIAKLLQQMVER--QKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLNEIL 117 (131)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 355555444 5557776665555444443322 333333333334466666666666666666666666666553
No 482
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=27.04 E-value=2.8e+02 Score=24.76 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhH--HHHHHHHHHHHHHHHHhhhhhccc
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGK--ALMAKCKTLQEENDEIGRQNEEGE 247 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GK--rLMAKCR~LqeENEELGr~lseGr 247 (342)
...-.+..+.++++.+++.|++++. ++..-.| +|=-|+.+|.+|.+.+..+.+..+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS--~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAIS--AQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS---TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888883 4442222 455566677777777776666554
No 483
>PRK15396 murein lipoprotein; Provisional
Probab=26.83 E-value=2.4e+02 Score=23.11 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=16.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVER 285 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~ 285 (342)
++-+|..++..++..++.+......+..-+....+|.+|
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444443
No 484
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.82 E-value=5.1e+02 Score=23.87 Aligned_cols=58 Identities=26% Similarity=0.418 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCCCchhhHHHHHHHHHHHHHHHHHhhhh
Q 019366 186 HEEFRRLKNLVEEKDKKVKELEENIAAVS-FTANSKMGKALMAKCKTLQEENDEIGRQN 243 (342)
Q Consensus 186 Nlef~rLR~eLee~~~klk~aq~eL~A~k-FtPqS~~GKrLMAKCR~LqeENEELGr~l 243 (342)
...+.+|.++++..+.++..++..+...+ --+++.-=..+|+++..|..++.+|-..+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777774443 23444444557777777777666665433
No 485
>PRK00153 hypothetical protein; Validated
Probab=26.67 E-value=60 Score=26.90 Aligned_cols=34 Identities=15% Similarity=0.366 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhh
Q 019366 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (342)
Q Consensus 189 f~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~G 222 (342)
|..|-+..++.+.+++++|.+|....|+-.|.-|
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~~~~~~s~~G 38 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQMEVEGEAGGG 38 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCC
Confidence 5677788899999999999999999999999555
No 486
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=26.61 E-value=4.7e+02 Score=26.85 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhCh-----hhHHHHHHHH
Q 019366 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDP-----AIHEEFRRLK 193 (342)
Q Consensus 119 ~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDP-----AVNlef~rLR 193 (342)
+++.+++.-+.+++-+..-.-=....+-.|....++..++..++..||...+.-+.+.....-.. ++-.....|+
T Consensus 3 Dik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~ 82 (418)
T TIGR00414 3 DRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELK 82 (418)
T ss_pred CHHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 019366 194 NLVEEKDKKVKELEENIAA 212 (342)
Q Consensus 194 ~eLee~~~klk~aq~eL~A 212 (342)
+++.+.+.+++.+..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 83 EELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 487
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.45 E-value=6.6e+02 Score=25.08 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=7.5
Q ss_pred hHHHhhHHHHHHHHH
Q 019366 281 DDVERSNEMVLMLRE 295 (342)
Q Consensus 281 eEvE~lqstl~~LQq 295 (342)
.|+..+...+-.||.
T Consensus 271 ~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 271 KEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555555443
No 488
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.08 E-value=4.6e+02 Score=23.17 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 250 QLSVKLALQKSL----NAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 250 ~Le~eLAlqK~~----~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
++-..|+..|.+ ++-|-..+++..++.....++|..++..+.....++...+.-+.-|...+
T Consensus 54 ~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 54 QVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 33344444444444445555555555555555555555444444444433
No 489
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=25.99 E-value=3.7e+02 Score=29.30 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=33.9
Q ss_pred HHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 177 RRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 177 R~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
+.+=.||-+..-++.|.+++...+.+++.|+..|.|..
T Consensus 400 ~~vG~dpe~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~ 437 (543)
T COG1315 400 IDVGMDPEIVERLKELTEEISLHEERLKKLTKLLVALV 437 (543)
T ss_pred eEeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778999999999999999999999999998877653
No 490
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=25.87 E-value=4.6e+02 Score=25.83 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=28.9
Q ss_pred hHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC
Q 019366 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (342)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~ 101 (342)
++..++..+..++..++.|+.|+.+.++|+..++.
T Consensus 99 ~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~ 133 (385)
T PRK09578 99 LKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRD 133 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566677788889999999999999999997764
No 491
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.87 E-value=2.2e+02 Score=29.51 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=31.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
+-++..+.+-.|...++|+.-+.+|....+.|+.++-.||..+-+|-...+.
T Consensus 227 me~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 227 MERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4445555556666666666666666666666666666666666665544444
No 492
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=25.76 E-value=5.4e+02 Score=27.78 Aligned_cols=90 Identities=23% Similarity=0.369 Sum_probs=0.0
Q ss_pred CChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChh----
Q 019366 111 PEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR--EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPA---- 184 (342)
Q Consensus 111 ~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~K--EQEiqel~s~l~dlk~~~~pss~qlR~~LlDPA---- 184 (342)
|+|+-+.+... |+.. ...++=-...+.++...-.++..+ .+++.+++..+..++.. -+-+|+
T Consensus 149 p~~~eil~~~~-L~T~-~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~----------~ik~p~~i~~ 216 (555)
T TIGR03545 149 PDPRALLKGED-LKTV-ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK----------DIKNPLELQK 216 (555)
T ss_pred CCHHHHhccCC-CCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc----------cCCCHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019366 185 IHEEFRRLKNLVEEKDKKVKELEENIAA 212 (342)
Q Consensus 185 VNlef~rLR~eLee~~~klk~aq~eL~A 212 (342)
.-.+|.+|+++++....+++.++.+|+.
T Consensus 217 ~~~e~d~lk~e~~~~~~~i~~~~~~l~~ 244 (555)
T TIGR03545 217 IKEEFDKLKKEGKADKQKIKSAKNDLQN 244 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=25.63 E-value=4.9e+02 Score=23.30 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 254 KLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 254 eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
.+..++..+..+..++.-|......-+..-.++..++-.....+...++.+++|+.|.+..+.
T Consensus 34 ~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 34 VLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 334444445555555444444444444444444455555555666667777777777665543
No 494
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.55 E-value=3.7e+02 Score=30.13 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=17.5
Q ss_pred HhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 276 MDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 276 l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
-++|+.|++..+..|-.|++.|.+++.++.+|+.++++
T Consensus 102 rqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 102 RQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 33444444444444444444444444444444444443
No 495
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.22 E-value=9.1e+02 Score=26.26 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=31.8
Q ss_pred ccccccccccccccccCCCchhhHHHh------hHHhhhhchhhhHhhHHHHHHHHHHH-----------HHHHHhc-cC
Q 019366 40 DDIFGSRKANSKVEETAPGVATGMILS------LRESLQNCKDTLATCQLELEAAKSEI-----------QKWHSSF-QN 101 (342)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~t~~il~------lr~~l~~~~~~~~~~~~~l~~a~~e~-----------~kW~~~f-~~ 101 (342)
--||+.-|--+- .++.+...-+++ +-+.+.+-..+..--...+..|.-+- ..|++++ +|
T Consensus 246 ~~i~~~~k~~~~---~a~~~~~p~~~~~~~q~~~~~~~~n~~~t~~~afv~~~~~q~e~~L~~kP~gVd~~~W~QA~~dn 322 (508)
T KOG3091|consen 246 QVIYPIAKTQGF---VAGRIPAPQSLNDQVQKTLKEWLLNTPKTRVLAFVYLSVAQTEAYLETKPAGVDQRIWRQAMKDN 322 (508)
T ss_pred eEeechhhcccc---cccCCCcchhHHHHHHHHHHHHhhcCCcchhhhhhccCHHHHHHHhcCCCCCcCHHHHHHHhhcC
Confidence 345555542222 334444444443 45556666566555555555555443 6899999 66
No 496
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=25.21 E-value=2.7e+02 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=14.3
Q ss_pred HHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 275 HMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 275 ~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
-+..+.+-.++...||..||++|..
T Consensus 100 Al~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 100 ALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444455555566666666666654
No 497
>PLN02678 seryl-tRNA synthetase
Probab=25.15 E-value=3.5e+02 Score=28.44 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=37.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhCh----hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDP----AIHEEFRRLKNLVEEKDKKVKELEENIA 211 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDP----AVNlef~rLR~eLee~~~klk~aq~eL~ 211 (342)
+-+|....++..++..++..+|...+--+.+......++ ++-.+...|+.++...+.++++++.++.
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556656666666555555444333333211111 2333456777788888888887777773
No 498
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.02 E-value=2.3e+02 Score=23.61 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHh
Q 019366 259 KSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEN 300 (342)
Q Consensus 259 K~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~ 300 (342)
.+..+.|.+..+.+.+.+..+..++..++..+-.+++.++++
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~~ 126 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQL 126 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 499
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=24.85 E-value=7e+02 Score=24.87 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHhcCCchHHHHHhhhChhhHHHHHH----HHHHHHHHHHHHHHHHHhhhhcccCCCc--------hhhHHHHHHHHH
Q 019366 164 DLKAQLKPPLMQARRLLLDPAIHEEFRR----LKNLVEEKDKKVKELEENIAAVSFTANS--------KMGKALMAKCKT 231 (342)
Q Consensus 164 dlk~~~~pss~qlR~~LlDPAVNlef~r----LR~eLee~~~klk~aq~eL~A~kFtPqS--------~~GKrLMAKCR~ 231 (342)
|+-+.-..-+.++|+.+++-...++-.- +++.-...=.+.-..=.+|..++|.=+= .-.+......++
T Consensus 111 DIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~ 190 (269)
T PF05278_consen 111 DIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHET 190 (269)
T ss_pred cHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 232 LQEENDEIGRQNEEGE--THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 232 LqeENEELGr~lseGr--ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
...|-++..|.+...+ +..+..+++...+-+.+++.+..++-..+-+|..+--+|+.+|..++..+.+
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=24.75 E-value=4.6e+02 Score=22.66 Aligned_cols=94 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCCCCC
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLEEDKNDSVSDK 328 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~~~~~~~~~~~~ 328 (342)
+.|-.+-+..|.++.-||+..-+-..-...|.+++..--..|.-+++|+.-..=...+|...++..............-.
T Consensus 1 Qkla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~~~k~ 80 (102)
T PF10205_consen 1 QKLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQKSKKK 80 (102)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q ss_pred CCCCCCcccCCCCC
Q 019366 329 NIGNDVTVSGEAVS 342 (342)
Q Consensus 329 ~~~~~~~~~~~~~~ 342 (342)
....+.+.+....+
T Consensus 81 ~~~~~~~~~~~~~~ 94 (102)
T PF10205_consen 81 KKSKKSNSQHSEQS 94 (102)
T ss_pred cccCCCccccccch
Done!