Query 019366
Match_columns 342
No_of_seqs 65 out of 67
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 14:58:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.9 0.0073 2.5E-07 50.9 27.4 11 148-158 92-102 (284)
2 1c1g_A Tropomyosin; contractIl 97.4 0.043 1.5E-06 46.1 29.3 44 266-309 229-272 (284)
3 1i84_S Smooth muscle myosin he 97.2 0.00012 4E-09 79.6 2.7 9 152-160 926-934 (1184)
4 3na7_A HP0958; flagellar bioge 96.5 0.45 1.5E-05 43.3 21.1 57 145-214 31-87 (256)
5 1i84_S Smooth muscle myosin he 96.4 0.011 3.7E-07 64.4 10.3 18 193-210 975-992 (1184)
6 2dfs_A Myosin-5A; myosin-V, in 95.7 0.038 1.3E-06 60.3 10.5 86 223-311 956-1046(1080)
7 2v71_A Nuclear distribution pr 95.7 1.1 3.9E-05 40.4 21.3 142 122-314 39-180 (189)
8 3oja_B Anopheles plasmodium-re 95.2 0.12 4.2E-06 50.5 11.3 67 247-313 517-583 (597)
9 3na7_A HP0958; flagellar bioge 95.0 2 6.7E-05 39.0 18.1 59 247-305 91-149 (256)
10 2v71_A Nuclear distribution pr 94.2 3.1 0.00011 37.5 20.3 70 248-317 90-159 (189)
11 3oja_B Anopheles plasmodium-re 94.1 2.1 7.1E-05 41.9 16.7 124 64-210 458-581 (597)
12 2dfs_A Myosin-5A; myosin-V, in 93.5 1.3 4.4E-05 48.5 15.3 43 183-241 956-998 (1080)
13 1ic2_A Tropomyosin alpha chain 93.4 0.66 2.3E-05 35.9 9.6 70 247-316 7-76 (81)
14 2v66_B Nuclear distribution pr 93.0 1.6 5.5E-05 36.5 11.8 96 223-318 6-107 (111)
15 3tnu_B Keratin, type II cytosk 92.8 0.9 3.1E-05 37.7 10.2 76 230-313 32-107 (129)
16 3tnu_A Keratin, type I cytoske 92.1 0.76 2.6E-05 38.3 8.9 76 230-313 34-109 (131)
17 3u1c_A Tropomyosin alpha-1 cha 91.9 3 0.0001 33.6 11.8 94 184-294 6-99 (101)
18 3s4r_A Vimentin; alpha-helix, 91.5 1 3.4E-05 36.1 8.5 18 225-242 21-38 (93)
19 3vkg_A Dynein heavy chain, cyt 90.3 27 0.00091 42.9 22.4 58 111-168 1892-1949(3245)
20 3vkg_A Dynein heavy chain, cyt 89.2 31 0.0011 42.3 21.8 92 190-298 2010-2101(3245)
21 3u59_A Tropomyosin beta chain; 86.8 10 0.00036 30.1 12.6 92 185-293 7-98 (101)
22 2no2_A HIP-I, huntingtin-inter 85.6 5.6 0.00019 32.6 9.3 77 232-316 6-82 (107)
23 2jee_A YIIU; FTSZ, septum, coi 84.5 5 0.00017 32.0 8.2 63 246-308 13-75 (81)
24 3o0z_A RHO-associated protein 84.4 6.5 0.00022 35.0 9.8 69 227-300 6-74 (168)
25 3u59_A Tropomyosin beta chain; 82.0 17 0.0006 28.8 11.5 76 228-308 10-85 (101)
26 3nmd_A CGMP dependent protein 81.1 5.5 0.00019 31.1 7.1 49 268-316 20-68 (72)
27 3hnw_A Uncharacterized protein 80.9 15 0.00051 31.2 10.4 8 243-250 53-60 (138)
28 3ol1_A Vimentin; structural ge 80.3 1.4 4.8E-05 36.4 3.8 42 61-102 19-60 (119)
29 3u1c_A Tropomyosin alpha-1 cha 80.3 21 0.00071 28.6 11.5 73 228-305 10-82 (101)
30 3efg_A Protein SLYX homolog; x 80.3 3.9 0.00013 31.8 6.1 36 280-315 27-62 (78)
31 3hnw_A Uncharacterized protein 79.1 14 0.00047 31.4 9.6 24 288-311 110-133 (138)
32 4h22_A Leucine-rich repeat fli 78.6 19 0.00063 29.9 9.8 73 248-320 18-90 (103)
33 3o0z_A RHO-associated protein 77.9 30 0.001 30.8 11.7 81 224-309 52-132 (168)
34 3ghg_A Fibrinogen alpha chain; 77.0 21 0.00072 37.0 11.8 38 271-308 114-151 (562)
35 3oja_A Leucine-rich immune mol 76.8 26 0.0009 33.5 12.0 58 259-316 413-470 (487)
36 1deb_A APC protein, adenomatou 76.2 7.3 0.00025 28.9 6.0 49 248-296 5-53 (54)
37 2qyw_A Vesicle transport throu 75.9 8.8 0.0003 30.8 7.1 55 257-311 46-101 (102)
38 3a7p_A Autophagy protein 16; c 75.3 15 0.0005 32.3 8.8 60 248-307 70-129 (152)
39 3nmd_A CGMP dependent protein 75.0 7.6 0.00026 30.3 6.2 46 123-168 21-69 (72)
40 3ol1_A Vimentin; structural ge 74.5 34 0.0012 28.0 11.5 60 249-308 37-103 (119)
41 3onj_A T-snare VTI1; helix, HA 73.9 11 0.00038 29.9 7.2 59 257-315 31-93 (97)
42 3a7p_A Autophagy protein 16; c 73.6 21 0.00073 31.3 9.5 63 250-312 65-127 (152)
43 1ci6_A Transcription factor AT 73.6 4.1 0.00014 30.3 4.3 38 222-264 25-62 (63)
44 3iv1_A Tumor susceptibility ge 73.1 15 0.00051 29.0 7.6 55 248-302 20-74 (78)
45 2efr_A General control protein 72.9 44 0.0015 29.1 11.3 113 185-307 26-138 (155)
46 3efg_A Protein SLYX homolog; x 72.3 10 0.00035 29.5 6.5 49 246-301 14-62 (78)
47 2zqm_A Prefoldin beta subunit 72.0 27 0.00092 27.3 9.0 43 273-315 69-111 (117)
48 1l8d_A DNA double-strand break 71.7 34 0.0012 26.8 10.5 22 192-213 1-22 (112)
49 1gk4_A Vimentin; intermediate 71.4 26 0.00089 27.1 8.6 56 254-312 2-57 (84)
50 2v4h_A NF-kappa-B essential mo 70.5 46 0.0016 27.8 11.3 66 225-306 43-108 (110)
51 2fxo_A Myosin heavy chain, car 70.4 44 0.0015 27.5 14.1 54 260-313 69-122 (129)
52 1vcs_A Vesicle transport throu 70.1 8.4 0.00029 30.9 5.7 59 257-315 35-94 (102)
53 3mq7_A Bone marrow stromal ant 68.8 14 0.00049 31.3 7.0 89 220-312 14-102 (121)
54 3s4r_A Vimentin; alpha-helix, 68.7 26 0.00089 27.8 8.2 68 132-207 9-76 (93)
55 3qh9_A Liprin-beta-2; coiled-c 68.6 23 0.0008 28.2 7.8 25 288-312 54-78 (81)
56 3a7o_A Autophagy protein 16; c 68.2 25 0.00084 27.7 7.7 59 251-309 16-74 (75)
57 1gd2_E Transcription factor PA 67.9 9 0.00031 29.4 5.2 20 292-311 47-66 (70)
58 1x8y_A Lamin A/C; structural p 67.6 11 0.00037 29.5 5.7 56 254-312 4-59 (86)
59 2i1j_A Moesin; FERM, coiled-co 67.1 6 0.0002 40.3 5.2 166 146-316 293-461 (575)
60 1fxk_A Prefoldin; archaeal pro 66.3 43 0.0015 25.8 10.4 41 273-313 64-104 (107)
61 1t2k_D Cyclic-AMP-dependent tr 65.7 14 0.00049 26.8 5.7 20 278-297 33-52 (61)
62 3mq9_A Bone marrow stromal ant 65.6 74 0.0025 30.3 12.2 24 261-284 444-467 (471)
63 3swk_A Vimentin; cytoskeleton, 64.2 43 0.0015 26.2 8.6 60 249-308 17-83 (86)
64 2ocy_A RAB guanine nucleotide 62.9 78 0.0027 27.6 15.6 50 269-318 96-145 (154)
65 2jee_A YIIU; FTSZ, septum, coi 62.7 56 0.0019 25.9 9.7 63 249-311 9-71 (81)
66 3mq7_A Bone marrow stromal ant 62.3 73 0.0025 27.1 12.3 50 251-300 62-111 (121)
67 1gd2_E Transcription factor PA 62.0 22 0.00074 27.3 6.3 39 260-298 29-67 (70)
68 2odv_A Plectin 1, HD1; plakin 61.0 97 0.0033 28.1 12.3 15 83-97 14-28 (235)
69 1t2k_D Cyclic-AMP-dependent tr 60.9 23 0.00078 25.7 6.1 36 275-310 23-58 (61)
70 2xdj_A Uncharacterized protein 60.9 35 0.0012 26.9 7.5 59 246-304 6-64 (83)
71 2yy0_A C-MYC-binding protein; 60.7 15 0.00053 26.6 5.0 34 280-313 18-51 (53)
72 3oja_A Leucine-rich immune mol 60.5 1.2E+02 0.0041 29.0 14.8 43 273-315 420-462 (487)
73 1ic2_A Tropomyosin alpha chain 60.4 54 0.0019 25.0 9.4 56 247-302 21-76 (81)
74 3mov_A Lamin-B1; LMNB1, B-type 60.1 14 0.00049 29.6 5.2 47 262-311 21-67 (95)
75 3d5a_X RF1, peptide chain rele 59.9 87 0.003 30.6 11.7 93 194-314 3-95 (354)
76 2wt7_A Proto-oncogene protein 59.5 21 0.00073 26.2 5.7 33 277-309 26-58 (63)
77 3q8t_A Beclin-1; autophagy, AT 59.3 66 0.0023 25.6 9.9 74 222-300 20-93 (96)
78 3m9b_A Proteasome-associated A 58.8 14 0.00048 34.7 5.7 40 269-315 56-95 (251)
79 2v66_B Nuclear distribution pr 58.4 79 0.0027 26.3 11.8 54 190-243 13-72 (111)
80 4etp_A Kinesin-like protein KA 58.1 26 0.00089 34.1 7.7 51 256-306 6-56 (403)
81 3r6n_A Desmoplakin; spectrin r 57.8 1.5E+02 0.0052 29.3 13.3 96 194-289 9-112 (450)
82 3cve_A Homer protein homolog 1 57.2 66 0.0022 24.9 9.7 32 225-261 5-36 (72)
83 1gqe_A Release factor 2, RF2; 57.0 1.4E+02 0.0048 29.3 12.6 89 196-309 27-115 (365)
84 1m1j_B Fibrinogen beta chain; 55.6 90 0.0031 31.5 11.2 28 287-314 167-194 (464)
85 1m1j_C Fibrinogen gamma chain; 54.5 1.6E+02 0.0055 29.1 12.7 52 259-310 83-134 (409)
86 2e7s_A RAB guanine nucleotide 54.3 42 0.0014 28.9 7.5 48 269-316 84-131 (135)
87 2v4h_A NF-kappa-B essential mo 54.0 31 0.0011 28.9 6.4 32 251-282 29-60 (110)
88 2ke4_A CDC42-interacting prote 53.5 63 0.0022 26.0 8.0 71 190-279 18-88 (98)
89 2wuj_A Septum site-determining 52.9 16 0.00055 26.6 4.1 34 270-303 23-56 (57)
90 3cvf_A Homer-3, homer protein 52.3 18 0.00063 28.5 4.5 56 258-313 18-73 (79)
91 3a7o_A Autophagy protein 16; c 51.9 11 0.00036 29.7 3.0 28 289-316 19-46 (75)
92 1jnm_A Proto-oncogene C-JUN; B 51.8 13 0.00045 27.2 3.4 32 270-301 25-56 (62)
93 1m1j_B Fibrinogen beta chain; 51.8 2E+02 0.0069 29.0 13.3 50 118-167 100-149 (464)
94 3m9b_A Proteasome-associated A 49.6 11 0.00039 35.4 3.4 14 230-243 27-40 (251)
95 3swk_A Vimentin; cytoskeleton, 49.2 59 0.002 25.4 7.1 84 65-169 3-86 (86)
96 3q8t_A Beclin-1; autophagy, AT 49.1 98 0.0034 24.6 11.1 57 111-167 4-61 (96)
97 1jnm_A Proto-oncogene C-JUN; B 47.9 27 0.00091 25.5 4.6 35 274-308 22-56 (62)
98 1wp7_A Fusion protein; fusion 47.6 56 0.0019 26.4 6.7 36 62-97 6-41 (89)
99 2eqb_B RAB guanine nucleotide 46.6 1E+02 0.0035 25.2 8.2 28 287-314 68-95 (97)
100 2b9c_A Striated-muscle alpha t 46.4 1.3E+02 0.0043 25.7 9.3 74 243-316 49-122 (147)
101 1fxk_C Protein (prefoldin); ar 45.1 72 0.0025 25.7 7.3 44 260-303 88-131 (133)
102 3i00_A HIP-I, huntingtin-inter 45.0 1.3E+02 0.0046 24.9 9.2 41 276-316 35-82 (120)
103 1l8d_A DNA double-strand break 44.6 1.1E+02 0.0037 23.8 10.8 19 193-211 9-27 (112)
104 1g6u_A Domain swapped dimer; d 44.6 82 0.0028 22.4 6.4 28 187-214 20-47 (48)
105 1deq_A Fibrinogen (alpha chain 43.6 2.2E+02 0.0076 28.3 11.6 43 197-239 63-107 (390)
106 2fxo_A Myosin heavy chain, car 43.0 1.4E+02 0.0047 24.5 15.9 60 250-309 66-125 (129)
107 2i1j_A Moesin; FERM, coiled-co 42.9 12 0.00039 38.2 2.6 90 222-313 337-430 (575)
108 2zdi_C Prefoldin subunit alpha 42.9 95 0.0032 25.8 7.9 118 145-299 1-144 (151)
109 3tnu_B Keratin, type II cytosk 42.7 96 0.0033 25.3 7.7 39 245-283 81-119 (129)
110 2wt7_A Proto-oncogene protein 42.4 63 0.0022 23.6 5.9 33 271-303 27-59 (63)
111 2oqq_A Transcription factor HY 42.0 62 0.0021 23.0 5.4 37 259-295 2-38 (42)
112 3he5_A Synzip1; heterodimeric 41.1 85 0.0029 22.4 6.1 38 247-284 4-41 (49)
113 1zbt_A RF-1, peptide chain rel 40.7 1.1E+02 0.0036 30.2 8.9 27 288-314 87-113 (371)
114 3err_A Fusion protein of micro 40.7 3E+02 0.01 27.8 13.3 55 118-172 25-87 (536)
115 3htk_A Structural maintenance 40.6 94 0.0032 21.9 7.4 19 290-308 35-53 (60)
116 3s9g_A Protein hexim1; cyclin 39.9 1.1E+02 0.0038 25.3 7.5 45 264-308 34-85 (104)
117 2wt7_B Transcription factor MA 38.8 65 0.0022 25.9 5.9 40 275-314 49-88 (90)
118 4dk0_A Putative MACA; alpha-ha 38.5 1.3E+02 0.0046 27.2 8.7 36 66-101 74-109 (369)
119 3u06_A Protein claret segregat 38.3 80 0.0027 30.9 7.6 54 263-316 6-59 (412)
120 4etp_A Kinesin-like protein KA 37.6 74 0.0025 30.9 7.2 56 261-316 4-59 (403)
121 3tnu_A Keratin, type I cytoske 37.4 75 0.0026 26.1 6.3 39 245-283 83-121 (131)
122 1lwu_C Fibrinogen gamma chain; 37.2 86 0.0029 30.1 7.5 40 272-311 17-56 (323)
123 1go4_E MAD1 (mitotic arrest de 37.2 1.7E+02 0.0057 24.0 8.2 63 182-244 7-92 (100)
124 2xs1_A Programmed cell death 6 37.0 3.7E+02 0.013 27.7 25.9 197 64-274 443-644 (704)
125 3vmx_A Voltage-gated hydrogen 36.9 1.1E+02 0.0039 22.1 6.3 35 255-289 6-40 (48)
126 3k29_A Putative uncharacterize 36.7 1.4E+02 0.0046 26.7 8.1 100 68-169 29-128 (169)
127 3a2a_A Voltage-gated hydrogen 36.6 82 0.0028 23.6 5.6 28 288-315 25-52 (58)
128 2no2_A HIP-I, huntingtin-inter 36.5 1.7E+02 0.0059 23.7 9.0 34 280-313 67-100 (107)
129 3cvf_A Homer-3, homer protein 36.2 1.6E+02 0.0053 23.2 9.3 36 227-267 13-48 (79)
130 3htk_A Structural maintenance 36.1 1.1E+02 0.0038 21.5 7.3 49 249-297 8-56 (60)
131 2zvf_A Alanyl-tRNA synthetase; 36.0 62 0.0021 26.8 5.7 25 286-310 30-54 (171)
132 3cve_A Homer protein homolog 1 35.9 1.5E+02 0.0051 22.9 8.9 65 249-313 3-67 (72)
133 1gk4_A Vimentin; intermediate 35.8 1.3E+02 0.0045 23.0 7.1 45 119-163 2-50 (84)
134 3m91_A Proteasome-associated A 35.6 60 0.002 23.6 4.7 13 277-289 19-31 (51)
135 3gp4_A Transcriptional regulat 35.5 1.2E+02 0.0041 25.1 7.3 47 270-316 84-130 (142)
136 4h22_A Leucine-rich repeat fli 35.4 1.7E+02 0.0059 24.1 8.0 53 262-314 18-70 (103)
137 3swy_A Cyclic nucleotide-gated 35.1 84 0.0029 22.5 5.3 36 279-314 3-38 (46)
138 3ghg_A Fibrinogen alpha chain; 34.9 2.6E+02 0.009 29.0 10.9 38 247-284 118-155 (562)
139 4emc_A Monopolin complex subun 34.8 45 0.0015 30.3 4.8 33 273-305 33-65 (190)
140 1ci6_A Transcription factor AT 34.1 1.2E+02 0.004 22.3 6.3 29 269-297 25-53 (63)
141 3he5_B Synzip2; heterodimeric 33.8 1.2E+02 0.0042 21.8 6.0 40 249-288 6-45 (52)
142 1hjb_A Ccaat/enhancer binding 33.7 1.8E+02 0.006 23.1 7.6 38 269-313 38-75 (87)
143 1jcd_A Major outer membrane li 33.7 1.4E+02 0.0047 21.8 6.9 34 276-309 13-46 (52)
144 1deq_A Fibrinogen (alpha chain 33.4 1.8E+02 0.006 29.0 9.1 22 223-244 63-84 (390)
145 3jsv_C NF-kappa-B essential mo 32.5 65 0.0022 26.3 4.9 29 281-309 61-89 (94)
146 2p22_A Suppressor protein STP2 32.3 2.6E+02 0.009 24.7 9.8 40 258-297 47-86 (174)
147 1jcd_A Major outer membrane li 32.3 1.1E+02 0.0036 22.4 5.6 26 279-304 9-34 (52)
148 2yfa_A MCPS, methyl-accepting 32.3 2.3E+02 0.008 24.0 21.5 143 147-290 80-243 (258)
149 2dgc_A Protein (GCN4); basic d 32.2 46 0.0016 24.7 3.7 8 302-309 51-58 (63)
150 3i00_A HIP-I, huntingtin-inter 32.1 2.2E+02 0.0075 23.7 9.1 11 230-240 18-28 (120)
151 2c5k_T Syntaxin TLG1, T-snare 32.1 61 0.0021 25.8 4.7 25 261-285 37-61 (95)
152 3azd_A Short alpha-tropomyosin 32.0 20 0.0007 24.3 1.6 31 281-311 4-34 (37)
153 3swf_A CGMP-gated cation chann 31.5 81 0.0028 24.7 5.2 23 279-301 5-27 (74)
154 1wt6_A Myotonin-protein kinase 31.5 1.6E+02 0.0053 23.5 6.9 43 116-158 29-71 (81)
155 2xv5_A Lamin-A/C; structural p 31.4 85 0.0029 24.1 5.3 30 279-308 3-32 (74)
156 3m91_A Proteasome-associated A 31.1 1.5E+02 0.0051 21.4 6.4 36 250-285 13-48 (51)
157 2l5g_B Putative uncharacterize 30.9 59 0.002 23.1 3.8 29 247-275 10-38 (42)
158 1hjb_A Ccaat/enhancer binding 30.9 1.3E+02 0.0046 23.7 6.5 34 135-168 32-65 (87)
159 1dh3_A Transcription factor CR 30.7 41 0.0014 24.3 3.2 19 293-311 34-52 (55)
160 3fpp_A Macrolide-specific effl 30.2 1.2E+02 0.0041 27.3 6.9 37 65-101 72-108 (341)
161 2pnv_A Small conductance calci 30.1 50 0.0017 23.3 3.4 32 260-291 9-40 (43)
162 3m0d_C TNF receptor-associated 29.3 1.7E+02 0.0058 21.5 7.0 49 263-311 9-57 (65)
163 3zcc_A HAMP, osmolarity sensor 28.8 1.5E+02 0.0053 20.9 6.1 41 249-292 69-109 (114)
164 2lw1_A ABC transporter ATP-bin 28.6 2E+02 0.0068 22.0 7.4 30 187-216 22-51 (89)
165 1zxa_A CGMP-dependent protein 28.2 94 0.0032 23.8 4.9 39 275-313 12-50 (67)
166 3t98_B Nucleoporin NUP58/NUP45 28.1 2.1E+02 0.007 22.8 7.2 32 279-310 49-80 (93)
167 3vp9_A General transcriptional 27.9 2.4E+02 0.0082 22.7 8.1 45 271-315 40-88 (92)
168 2dq0_A Seryl-tRNA synthetase; 27.8 2.7E+02 0.0093 27.4 9.5 68 144-211 29-100 (455)
169 2xv5_A Lamin-A/C; structural p 27.6 1.6E+02 0.0054 22.6 6.2 35 247-281 13-47 (74)
170 4gkw_A Spindle assembly abnorm 26.9 3.2E+02 0.011 23.9 10.7 105 188-301 12-132 (167)
171 2f1m_A Acriflavine resistance 26.9 3.1E+02 0.011 23.8 9.6 35 67-101 58-92 (277)
172 3trt_A Vimentin; cytoskeleton, 26.8 1.9E+02 0.0065 21.3 9.3 39 276-314 37-75 (77)
173 4fz4_A 0197-18KD, uncharacteri 26.8 1.1E+02 0.0038 26.9 5.8 73 196-296 6-95 (154)
174 2lw1_A ABC transporter ATP-bin 26.7 2.2E+02 0.0074 21.8 8.3 17 146-162 29-45 (89)
175 2q6q_A Spindle POLE BODY compo 26.6 1.8E+02 0.006 22.7 6.2 45 267-311 3-47 (74)
176 4dzn_A Coiled-coil peptide CC- 26.3 75 0.0026 21.1 3.5 27 188-214 3-29 (33)
177 2oto_A M protein; helical coil 26.3 2.8E+02 0.0097 23.1 12.1 46 191-241 26-71 (155)
178 2oto_A M protein; helical coil 25.9 2.9E+02 0.0099 23.0 11.8 10 228-237 30-39 (155)
179 1d7m_A Cortexillin I; coiled-c 25.9 2.7E+02 0.0093 22.8 8.0 51 249-299 7-57 (101)
180 2efr_A General control protein 25.5 3.3E+02 0.011 23.6 19.5 16 227-242 42-57 (155)
181 2p22_C Protein SRN2; endosome, 25.5 3.5E+02 0.012 23.9 14.0 49 193-247 103-151 (192)
182 3t97_C Nuclear pore glycoprote 25.4 73 0.0025 24.0 3.8 38 253-290 26-63 (64)
183 3viq_B Mating-type switching p 25.4 53 0.0018 26.2 3.2 27 285-311 5-31 (85)
184 3okq_A BUD site selection prot 25.4 1.7E+02 0.0058 25.4 6.6 55 223-277 24-78 (141)
185 1nlw_A MAD protein, MAX dimeri 25.2 1.1E+02 0.0038 23.4 5.0 12 274-285 47-58 (80)
186 1wlq_A Geminin; coiled-coil; 2 25.0 1.2E+02 0.004 24.3 5.1 26 234-264 38-63 (83)
187 3u06_A Protein claret segregat 24.8 1.8E+02 0.0062 28.4 7.6 52 258-309 8-59 (412)
188 2fic_A Bridging integrator 1; 24.7 3.4E+02 0.012 23.5 13.8 65 243-311 128-202 (251)
189 4gkw_A Spindle assembly abnorm 24.6 3.5E+02 0.012 23.6 9.9 59 247-305 12-70 (167)
190 1nkp_A C-MYC, MYC proto-oncoge 24.4 1.3E+02 0.0045 23.3 5.3 32 274-305 52-83 (88)
191 1wle_A Seryl-tRNA synthetase; 24.2 3.2E+02 0.011 27.4 9.4 35 282-316 117-151 (501)
192 3c3f_A Alpha/beta peptide with 24.0 1.2E+02 0.0041 20.7 4.2 19 293-311 13-31 (34)
193 3m48_A General control protein 23.8 88 0.003 21.2 3.5 18 293-310 12-29 (33)
194 1uo4_A General control protein 23.7 88 0.003 21.3 3.5 19 293-311 13-31 (34)
195 2oqq_A Transcription factor HY 23.7 2E+02 0.0068 20.4 5.6 33 275-307 4-36 (42)
196 3he5_A Synzip1; heterodimeric 23.6 98 0.0033 22.1 4.0 37 225-261 8-46 (49)
197 3mq9_A Bone marrow stromal ant 23.6 4.7E+02 0.016 24.7 13.4 40 260-299 397-436 (471)
198 3c9i_A Tail needle protein GP2 23.5 3.2E+02 0.011 25.4 8.3 72 245-316 83-154 (242)
199 1nkp_B MAX protein, MYC proto- 23.1 1.8E+02 0.0061 21.9 5.7 17 256-272 43-59 (83)
200 1m1j_C Fibrinogen gamma chain; 23.0 5.5E+02 0.019 25.3 13.2 40 63-102 28-67 (409)
201 3ok8_A Brain-specific angiogen 22.6 4.5E+02 0.015 24.1 16.0 59 216-274 67-129 (222)
202 1gk6_A Vimentin; intermediate 22.5 1.1E+02 0.0039 22.1 4.3 38 246-283 7-44 (59)
203 3bas_A Myosin heavy chain, str 22.3 2.7E+02 0.0093 21.5 9.7 57 252-308 13-69 (89)
204 3oyv_A Imelysin; outer membran 22.3 5.2E+02 0.018 24.8 10.8 95 190-287 162-260 (361)
205 4emc_A Monopolin complex subun 22.3 1.2E+02 0.004 27.5 5.2 39 268-306 14-52 (190)
206 1kd8_A GABH AIV, GCN4 acid bas 22.2 1.1E+02 0.0039 21.0 3.9 7 279-285 6-12 (36)
207 3c3g_A Alpha/beta peptide with 22.0 1.4E+02 0.0047 20.2 4.2 19 293-311 12-30 (33)
208 2oxj_A Hybrid alpha/beta pepti 21.9 1.3E+02 0.0044 20.5 4.1 19 293-311 13-31 (34)
209 2eqb_B RAB guanine nucleotide 21.7 3.3E+02 0.011 22.2 12.6 63 130-211 31-93 (97)
210 1lwu_B Fibrinogen beta chain; 21.5 99 0.0034 29.6 4.8 27 289-315 29-55 (323)
211 2xzr_A Immunoglobulin-binding 21.3 3.5E+02 0.012 22.4 8.1 62 220-304 45-106 (114)
212 2dgc_A Protein (GCN4); basic d 21.1 81 0.0028 23.3 3.3 20 248-267 32-51 (63)
213 1wle_A Seryl-tRNA synthetase; 21.1 2.6E+02 0.0087 28.2 8.0 67 144-210 68-146 (501)
214 1lwu_C Fibrinogen gamma chain; 21.1 1.7E+02 0.0058 28.1 6.4 12 228-239 6-17 (323)
215 2ke4_A CDC42-interacting prote 21.0 2.5E+02 0.0085 22.5 6.5 7 228-234 16-22 (98)
216 3trt_A Vimentin; cytoskeleton, 21.0 2.5E+02 0.0086 20.6 8.3 32 283-314 37-68 (77)
217 3mov_A Lamin-B1; LMNB1, B-type 20.9 1.3E+02 0.0044 24.0 4.7 47 117-163 11-61 (95)
218 3pdy_A Plectin; cytoskeleton, 20.8 3.9E+02 0.013 22.7 17.0 20 267-286 152-171 (210)
219 2fyz_A Fusion protein, fusion 20.4 1.8E+02 0.0062 21.9 5.1 37 61-97 16-52 (63)
220 1ses_A Seryl-tRNA synthetase; 20.3 2.9E+02 0.0098 26.9 7.9 20 225-244 40-59 (421)
221 3m0d_C TNF receptor-associated 20.2 2.6E+02 0.009 20.5 8.3 16 287-302 47-62 (65)
222 4b4t_K 26S protease regulatory 20.2 1.2E+02 0.0042 29.7 5.3 41 268-308 50-90 (428)
223 2zqm_A Prefoldin beta subunit 20.2 3E+02 0.01 21.1 11.5 15 148-162 15-29 (117)
224 2wvr_A Geminin; DNA replicatio 20.1 1.7E+02 0.0056 27.0 5.7 45 233-286 114-158 (209)
225 2q73_A MAZG, hypothetical prot 20.1 1.6E+02 0.0055 22.8 5.1 39 203-246 3-41 (100)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.92 E-value=0.0073 Score=50.87 Aligned_cols=11 Identities=18% Similarity=0.187 Sum_probs=4.0
Q ss_pred HHhHHHHHHHH
Q 019366 148 FAKREQEIAEL 158 (342)
Q Consensus 148 LA~KEQEiqel 158 (342)
+...+.++.++
T Consensus 92 ~~~~~~~~~~~ 102 (284)
T 1c1g_A 92 IQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.42 E-value=0.043 Score=46.12 Aligned_cols=44 Identities=7% Similarity=0.098 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 266 KSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 266 rk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
+..+..+..-+..+...+..++..+..++.++......+.++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
T 1c1g_A 229 SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE 272 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.20 E-value=0.00012 Score=79.62 Aligned_cols=9 Identities=22% Similarity=0.494 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 019366 152 EQEIAELKS 160 (342)
Q Consensus 152 EQEiqel~s 160 (342)
+.++.++..
T Consensus 926 e~~l~ele~ 934 (1184)
T 1i84_S 926 EEILHEMEA 934 (1184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.53 E-value=0.45 Score=43.29 Aligned_cols=57 Identities=9% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
-..|..++.++..+...+..++.... .+...+.++...+.....+++..+..|..++
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~-------------d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~ 87 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKL-------------ALKLQVSKNEQTLQDTNAKIASIQKKMSEIK 87 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45666666666666666655544411 2445567888888888888888888888777
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.42 E-value=0.011 Score=64.43 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 019366 193 KNLVEEKDKKVKELEENI 210 (342)
Q Consensus 193 R~eLee~~~klk~aq~eL 210 (342)
..++...+.+++.++.++
T Consensus 975 ~~e~~~le~~l~~l~~el 992 (1184)
T 1i84_S 975 QLEKVTADGKIKKMEDDI 992 (1184)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333334333333
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.75 E-value=0.038 Score=60.27 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc-----ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHH
Q 019366 223 KALMAKCKTLQEENDEIGRQNEE-----GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~lse-----Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL 297 (342)
..+...|..|+.++++|-....+ .+|..|+.+++.+++....+.++.+.+.+-+.++. +.|++.|..|+.++
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQN 1032 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 45667777887777777664443 56667777777777777777777666666665555 35567777777777
Q ss_pred HHhHHHHHHHHHHH
Q 019366 298 EENDHELEKLKHEL 311 (342)
Q Consensus 298 ~~~~~~l~~lk~eL 311 (342)
..+++++..|...+
T Consensus 1033 ~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1033 TLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666433
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.70 E-value=1.1 Score=40.35 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=73.2
Q ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHH
Q 019366 122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDK 201 (342)
Q Consensus 122 ~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~ 201 (342)
.=++.|+.|..+|..+.+|..-+..+++.+..|+..+++-+...+..+ +-.+..|..+|.....
T Consensus 39 sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~----------------~~~~~~Lq~el~~l~~ 102 (189)
T 2v71_A 39 GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS----------------YKQVSVLEDDLSQTRA 102 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Confidence 346678888888888888888888888888888888877665554431 1123344444333332
Q ss_pred HHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019366 202 KVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTD 281 (342)
Q Consensus 202 klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLde 281 (342)
. -..|..+||.|.+.|..|-|... ...+-++.|...+.....-..=|+.
T Consensus 103 ~-------------------~~~l~~~ireLEq~NDdlEr~~R------------~~~~SleD~e~kln~aiEr~alLE~ 151 (189)
T 2v71_A 103 I-------------------KEQLHKYVRELEQANDDLERAKR------------ATIMSLEDFEQRLNQAIERNAFLES 151 (189)
T ss_dssp H-------------------HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-------------------HHHHHHHHHHHHHHhhHHHHHHH------------HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 23466799999999999988543 1222333334443333333333444
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 282 DVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 282 EvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
|++. --.|+.++.+.+.++.-|+.+|.-+
T Consensus 152 El~E----Ke~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 152 ELDE----KESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHHH----HHHHHCCC-----------------
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 1123444444555555555554433
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.25 E-value=0.12 Score=50.54 Aligned_cols=67 Identities=9% Similarity=0.084 Sum_probs=52.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
+.+.++.++-..++..++.+..++.+..-+++++...+.++..+..+++++..++.++..|.+++..
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5667777777778888888888888888888888888888888888888888888888877766643
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.04 E-value=2 Score=39.05 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=41.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
-...|..++..++..+..+.....++..-++.+...++.++..+..++.+|.....++.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777777777777777777777766655554443
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.16 E-value=3.1 Score=37.52 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=54.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhc
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVL 317 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~ 317 (342)
|..|..+++..+..+..|++.+.+|+.--.+|+...--..+++--++..+.++-..++-|..+|..+..+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l 159 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESL 159 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777788888888888877777777777777888888888888888888888888877653
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.10 E-value=2.1 Score=41.92 Aligned_cols=124 Identities=18% Similarity=0.174 Sum_probs=70.5
Q ss_pred HHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHH
Q 019366 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAA 143 (342)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnv 143 (342)
|-.++..++..+..+...+..+.....+++.++..++- .-..-...-..+...++.+++-.+.+...++..++....
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRL---PKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADA 534 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCc---cccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 44566666777777777777777777888777774332 111111222445555555555555555555555555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 144 ll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL 210 (342)
....+-..++|+.++...+...|.. +.+|+.++...+.+++++..++
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~--------------------~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAK--------------------QAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhH--------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555554443 3466666666666666666655
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.49 E-value=1.3 Score=48.47 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhh
Q 019366 183 PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGR 241 (342)
Q Consensus 183 PAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr 241 (342)
+....++..|+..+++.+...++.. .+.++++.|++|+++|-.
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e~~----------------~~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEEAK----------------NATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
Confidence 4455666667666655555322222 234677888888777655
No 13
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=93.42 E-value=0.66 Score=35.86 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=62.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
|++.|..+.-......+.+...+++...-...++.++..++..|..|+.+|.++...+...+..|+..+-
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888899999999999999999999999999999999999999999988887653
No 14
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.02 E-value=1.6 Score=36.50 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHH
Q 019366 223 KALMAKCKTLQEENDEIGRQNEEG------ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREK 296 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~lseG------ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqe 296 (342)
+-|..+|..|..|++++..-.... .|..|..+|...+..+..|...+.+|+.--.+|+-..--..++|.-+...
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 446666777777777666544332 35667777777788888888777777776666666655567778889999
Q ss_pred HHHhHHHHHHHHHHHhhhhhcc
Q 019366 297 LEENDHELEKLKHELRQKSVLE 318 (342)
Q Consensus 297 L~~~~~~l~~lk~eL~~~~~~~ 318 (342)
+..+-...+-|..||..+..+.
T Consensus 86 ~n~aiErnalLE~El~EKe~L~ 107 (111)
T 2v66_B 86 LNQAIERNAFLESELDEKESLL 107 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998776643
No 15
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.84 E-value=0.9 Score=37.70 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 230 KTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 230 R~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
+.-..|.-||.+ .|+.|+++|..+++.+.-|..+..+....- ..++..+|..|..|..+|.+++.++++.-.
T Consensus 32 ~~~k~Ei~elrr-----~iq~L~~el~~l~~~~~~LE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 32 RNTKHEISEMNR-----MIQRLRAEIDNVKKQCANLQNAIADAEQRG---ELALKDARNKLAELEEALQKAKQDMARLLR 103 (129)
T ss_dssp --CHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445677888877 568999999999999999999988887644 567889999999999999999999988766
Q ss_pred HHhh
Q 019366 310 ELRQ 313 (342)
Q Consensus 310 eL~~ 313 (342)
+.+.
T Consensus 104 EYq~ 107 (129)
T 3tnu_B 104 EYQE 107 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 16
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.11 E-value=0.76 Score=38.31 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 230 KTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 230 R~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
+....|.-||-+ .|+.|+++|..+++.+.-|..+..++... ...++..+|..|..|..+|.+++.++++.-.
T Consensus 34 ~~~k~Ei~elrr-----~iq~L~~el~~l~~~~~sLE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~ 105 (131)
T 3tnu_A 34 QSGKSEISELRR-----TMQNLEIELQSQLSMKASLENSLEETKGR---YCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQ 105 (131)
T ss_dssp -------CHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777 57899999999999999999998888764 3567889999999999999999999988766
Q ss_pred HHhh
Q 019366 310 ELRQ 313 (342)
Q Consensus 310 eL~~ 313 (342)
+.+.
T Consensus 106 EYq~ 109 (131)
T 3tnu_A 106 EYKI 109 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.89 E-value=3 Score=33.57 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHH
Q 019366 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNA 263 (342)
Q Consensus 184 AVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~e 263 (342)
+|..=++-||.+.+.+..++++++..+.. +-.+|..+.+|...|-+ |++.|+.++-.......
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~------------~e~~~~~~E~Ei~sL~k-----k~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKA------------AEERSKQLEDDIVQLEK-----QLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 34455566777777777777777666643 23466666777766666 67778888777777777
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHH
Q 019366 264 ELKSQFEALYKHMDGLTDDVERSNEMVLMLR 294 (342)
Q Consensus 264 ELrk~~~eL~~~l~eLdeEvE~lqstl~~LQ 294 (342)
+....+++-.......+.+|..|+.-|-.|.
T Consensus 69 ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 69 KSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777777777777777777777777766554
No 18
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=91.50 E-value=1 Score=36.11 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019366 225 LMAKCKTLQEENDEIGRQ 242 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~ 242 (342)
.+.|.|.|.++|..|-..
T Consensus 21 yIdKVR~LEqqN~~Le~~ 38 (93)
T 3s4r_A 21 LIDKVRFLEQQNKILLAE 38 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999999887543
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.31 E-value=27 Score=42.87 Aligned_cols=58 Identities=12% Similarity=0.230 Sum_probs=40.8
Q ss_pred CChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 111 PEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 111 ~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
-+|+.-.+-|..-+..=.+-++++.+.+.|=..=|..|.....++.+|+..+.+++..
T Consensus 1892 vTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~ 1949 (3245)
T 3vkg_A 1892 VTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRE 1949 (3245)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777766666666666777777775566677777777777777777776554
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.25 E-value=31 Score=42.32 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~ 269 (342)
.=+|.+|.+.+.+++.++..|.+.. ++.+.|++..++|.... +.+..+....+..++..+.+.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~------------~~L~~le~~l~~L~~~~-----~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIV------------ATITALEKSIATYKEEY-----ATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554421 23333333333332211 122233333344444444444
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 270 EALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 270 ~eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
.--.+.|..|..|-+|=.+++..++.++.
T Consensus 2073 ~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2073 DRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 44455555555555555555555554443
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.78 E-value=10 Score=30.12 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHH
Q 019366 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264 (342)
Q Consensus 185 VNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eE 264 (342)
|..=++.||-+.+.+..+..+++..+... -.+|..+.+|...|.+ |+..|+.++-........
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~------------e~~~~~~E~ei~sL~k-----Kiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQA------------EDRCKQLEEEQQGLQK-----KLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666665555332 2345555555555555 455555555555555555
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHH
Q 019366 265 LKSQFEALYKHMDGLTDDVERSNEMVLML 293 (342)
Q Consensus 265 Lrk~~~eL~~~l~eLdeEvE~lqstl~~L 293 (342)
....+++-.....+.+.+|..|+.-|-.|
T Consensus 70 a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 70 AQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554433
No 22
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=85.57 E-value=5.6 Score=32.65 Aligned_cols=77 Identities=22% Similarity=0.321 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 232 LQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 232 LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
|...|.|.+|+++..+-++=+.+ ..| .+|..++.++. .+-....++=+..|-.|+.+|...+.++..++..+
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e--~~k---~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l 77 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLE--REK---KELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSL 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788887775543332222 211 22222332222 23334444455567778888888888888887766
Q ss_pred hhhhh
Q 019366 312 RQKSV 316 (342)
Q Consensus 312 ~~~~~ 316 (342)
+....
T Consensus 78 ~~~~~ 82 (107)
T 2no2_A 78 ETSAQ 82 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.50 E-value=5 Score=31.96 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=46.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
.||+++=-.|++++-.+++||.....|..-..++....+.+...+.+|+++...++..+..|=
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777777777777777777777777777777777778888888777776553
No 24
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.36 E-value=6.5 Score=35.00 Aligned_cols=69 Identities=12% Similarity=0.002 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHh
Q 019366 227 AKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEN 300 (342)
Q Consensus 227 AKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~ 300 (342)
.|+..|+..++|+...+- .-.-..+..|+...|+.+....++..+.+|.+-+-.++..-..|++++...
T Consensus 6 eKi~~LekQL~E~n~kLk-----~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~L 74 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLR-----TESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQL 74 (168)
T ss_dssp ----CTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777776443 112223445555555555555555555444444444444444444444333
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.05 E-value=17 Score=28.82 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 228 KCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 228 KCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
|...|..|.+..-. |+..++..+-........+...+..|.+-+..+..+++..+..+...+..|.......+.-
T Consensus 10 Km~~lk~e~e~a~d-----~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A 84 (101)
T 3u59_A 10 KMQMLKLDKENAID-----RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA 84 (101)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554433 5566666666666666666666666666666677777776666666666666555544433
Q ss_pred H
Q 019366 308 K 308 (342)
Q Consensus 308 k 308 (342)
.
T Consensus 85 E 85 (101)
T 3u59_A 85 E 85 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.12 E-value=5.5 Score=31.13 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 268 QFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 268 ~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
++.+|...+...++++-.-.+.|-.|+.+|.+++.+|..|+.+|-+...
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677788888888888888888888999999999999999999876654
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.88 E-value=15 Score=31.22 Aligned_cols=8 Identities=0% Similarity=-0.213 Sum_probs=3.2
Q ss_pred hhcccchh
Q 019366 243 NEEGETHQ 250 (342)
Q Consensus 243 lseGria~ 250 (342)
++..+++-
T Consensus 53 l~~~r~aV 60 (138)
T 3hnw_A 53 MSAELRTD 60 (138)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHH
Confidence 33344443
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.30 E-value=1.4 Score=36.41 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=37.2
Q ss_pred hhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCc
Q 019366 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNE 102 (342)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e 102 (342)
-+.|=.||..|......-+.+..++..++..++.|+.-++++
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E 60 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 457889999999999999999999999999999999877664
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=80.28 E-value=21 Score=28.58 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 228 KCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 228 KCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
|...|..+.+..-. |+..++..+-........+...+..|..-+..+.+|++..+..+...++.|.......+
T Consensus 10 Km~~lk~e~e~a~d-----rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 10 KMQMLKLDKENALD-----RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555444333 45566666555556666666666666666667777777766666666666666555444
No 30
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=80.28 E-value=3.9 Score=31.84 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=18.2
Q ss_pred hhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 280 TDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 280 deEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
+.-++.||..|..+|.+|.+...++..|...|....
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555666666666666665555554443
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.10 E-value=14 Score=31.40 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 288 EMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 288 stl~~LQqeL~~~~~~l~~lk~eL 311 (342)
..+.-|+.++.....++.+|+.+|
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443
No 32
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=78.60 E-value=19 Score=29.90 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=61.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccc
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLEED 320 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~~~~ 320 (342)
.|+|.-+-+.+.-+++-||-.++++.+.+.++.-+.+.-...+-.+.-.....+.++..++..|.++.....+
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~E 90 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEP 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888889999999999999999999988888888888888888888888888888888888888776544
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.88 E-value=30 Score=30.76 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHH
Q 019366 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHE 303 (342)
Q Consensus 224 rLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~ 303 (342)
-|-.+|+.|+..-..|.+.+ ..|-+.|..-+.--.-..-.+.+|..-|..|..|++++-..+.....+.++....
T Consensus 52 ELq~~~~~L~~~k~~Leke~-----~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek 126 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDY-----YQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM 126 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777643 3444555444444444444466677777778888887777666666665555555
Q ss_pred HHHHHH
Q 019366 304 LEKLKH 309 (342)
Q Consensus 304 l~~lk~ 309 (342)
+..|..
T Consensus 127 l~~lEK 132 (168)
T 3o0z_A 127 LNHSEK 132 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.97 E-value=21 Score=36.97 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=18.6
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 271 ALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 271 eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
+|.+.++.|.+.|..-=++|..||.-|+....+|.||.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433455555555555555555554
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.80 E-value=26 Score=33.54 Aligned_cols=58 Identities=7% Similarity=-0.004 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 259 KSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 259 K~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
.+.++..+.-+.++..-.+.+..+++.+++.+-.|.++-++.+.++..+...+...+.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 3333333333444555555577777777777777777777777777777766666554
No 36
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=76.22 E-value=7.3 Score=28.90 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=43.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHH
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREK 296 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqe 296 (342)
--+|-.+++..|..|.-||+++++=-.++-.|+.|.-+|-+.+.+||..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~ 53 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGS 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHccc
Confidence 3467778889999999999999999999999999999999999999863
No 37
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=75.86 E-value=8.8 Score=30.81 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH-HHHHHHHHHHhHHHHHHHHHHH
Q 019366 257 LQKSLNAELKSQFEALYKHMDGLTDDVERSNEM-VLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 257 lqK~~~eELrk~~~eL~~~l~eLdeEvE~lqst-l~~LQqeL~~~~~~l~~lk~eL 311 (342)
--|..+.++...++|.+++|.+|+-|+-.+... =..++.+|+.-++++..|+.++
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346677888889999999999999999887765 4568899999999999998876
No 38
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=75.28 E-value=15 Score=32.34 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=33.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
|..|+.+++..+..+..+.-.+++=.+.++.+..|+.-+|-.+.++++++.+++.+...|
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555666665555555555555555555433
No 39
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=74.97 E-value=7.6 Score=30.32 Aligned_cols=46 Identities=13% Similarity=0.369 Sum_probs=30.9
Q ss_pred hHhhHHHHHHHHHHHHhHH---HHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 123 LKSSEEMLKEQLEKAKKKE---AAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 123 lk~sE~~LkeQl~eakrRE---nvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
+++.+.-|+.-..+.+.|+ ..+-.+|..|+.+|++|++.+..+|+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5666666666666666666 456667777777777777777666544
No 40
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.54 E-value=34 Score=28.03 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH-------HHHHHHHHHHhHHHHHHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEM-------VLMLREKLEENDHELEKLK 308 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqst-------l~~LQqeL~~~~~~l~~lk 308 (342)
++|+.++...+..++++|..|++-...-..++.++.++..- -..|+.++.....++.+|+
T Consensus 37 a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 37 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555555555554444322 2445566666666666655
No 41
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=73.91 E-value=11 Score=29.91 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhh--HHH-HHHHHHHHHHhHHHHHH-HHHHHhhhh
Q 019366 257 LQKSLNAELKSQFEALYKHMDGLTDDVERS--NEM-VLMLREKLEENDHELEK-LKHELRQKS 315 (342)
Q Consensus 257 lqK~~~eELrk~~~eL~~~l~eLdeEvE~l--qst-l~~LQqeL~~~~~~l~~-lk~eL~~~~ 315 (342)
--+..+.+....+++..++|.+|+-|+-.+ ... =..++.+|+.-+.++.. |+.+|.+..
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888999999999999999999888 433 56789999999999999 999988764
No 42
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=73.64 E-value=21 Score=31.29 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 250 QLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 250 ~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
.+...|...++....++..+.++...+.+-+..++.++..+..||-++......+.+|+.|=.
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577777777888888888888888888888888888888888888888888888877643
No 43
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.59 E-value=4.1 Score=30.29 Aligned_cols=38 Identities=26% Similarity=0.481 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHH
Q 019366 222 GKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264 (342)
Q Consensus 222 GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eE 264 (342)
...|..++..|..+|.+|.. +|..|+.++..+|..+.|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~-----~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKE-----RADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhh
Confidence 34466677777777777766 456666666666655443
No 44
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=73.15 E-value=15 Score=29.05 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=47.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHH
Q 019366 248 THQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDH 302 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~ 302 (342)
+.+--.+|..++...+||+.-...|.++|..|+.+...+...|-.|+...+....
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567889999999999999999999999999999999999998887766543
No 45
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=72.92 E-value=44 Score=29.11 Aligned_cols=113 Identities=23% Similarity=0.285 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHH
Q 019366 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264 (342)
Q Consensus 185 VNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eE 264 (342)
+...+.|-..-++.++.++..+.++|.++. ..=|.|-.....-.+--+. -+.+|..|+..+--.....++
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~-----~nlKsLE~seekasqrEd~-----yEeqIk~L~~kLKEAE~RAE~ 95 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVT-----NNLKSLEAQAEKYSQKEDK-----YEEEIKVLSDKLKEAETRAEF 95 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhccchhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777777777777777665 1112222222222111111 122344444444444444444
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 265 LKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 265 Lrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
-.++...|..-|..|+.++..-......++.+|..+-.++.-+
T Consensus 96 AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 96 AERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555554555555555555555554443
No 46
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=72.33 E-value=10 Score=29.46 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=28.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~ 301 (342)
.||..||+.+|.|... +++|.+.|.....++++|+..+..|-++++...
T Consensus 14 ~Ri~~LE~klAfqE~t-------IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQA-------LTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677777777766544 444566666666677776666666666655444
No 47
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=72.03 E-value=27 Score=27.32 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=28.6
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 273 YKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
.+++..|+...+.+...|..|..++.....++..++..|..+-
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666677777777777777777766553
No 48
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.73 E-value=34 Score=26.78 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 019366 192 LKNLVEEKDKKVKELEENIAAV 213 (342)
Q Consensus 192 LR~eLee~~~klk~aq~eL~A~ 213 (342)
|+..+...+.++.++..+|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~L 22 (112)
T 1l8d_A 1 MKKLLEELETKKTTIEEERNEI 22 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666654
No 49
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=71.41 E-value=26 Score=27.08 Aligned_cols=56 Identities=13% Similarity=0.258 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 254 KLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 254 eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
+|..+++++.-|..++.++.... ..++...|..|..|..+|.+.+.++++.-.+.+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~---~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq 57 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENF---AVEAANYQDTIGRLQDEIQNMKEEMARHLREYQ 57 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666766666665544 446778888888888888888888877655544
No 50
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=70.51 E-value=46 Score=27.82 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 225 LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
-|..|..|.+|.+-+-..+ -.+.+++.+++-.+.-|. .+ -.+.|++++.+-.|+++|+....++
T Consensus 43 Kq~~idelk~ei~q~~~~l---------E~I~vLkaQv~IY~~DF~------aE-RadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVM---------ETVPVLKAQADIYKADFQ------AE-RHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------THHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHc------cc-hhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456666666554432222 135556666655443332 22 2466777777777777776666555
Q ss_pred HH
Q 019366 305 EK 306 (342)
Q Consensus 305 ~~ 306 (342)
.+
T Consensus 107 ~~ 108 (110)
T 2v4h_A 107 NK 108 (110)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 51
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=70.44 E-value=44 Score=27.53 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 260 SLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 260 ~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
...+-|.++-.+|...|.++...++..-.....|+.+-++...++..|+..|+.
T Consensus 69 E~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555555555555555555543
No 52
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=70.07 E-value=8.4 Score=30.86 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH-HHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 257 LQKSLNAELKSQFEALYKHMDGLTDDVERSNEM-VLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 257 lqK~~~eELrk~~~eL~~~l~eLdeEvE~lqst-l~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
--+..+.+....++|.+++|.+|+-|+-.+... =..++.+|+.-+.++..|+.++.+..
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888899999999999999999887654 45788999999999999999887644
No 53
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.84 E-value=14 Score=31.35 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 220 KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 220 ~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
.-|-+.-..||..-.=.+.==.+..++ ...-|++.+.+...+.-|+.++++.--.. -..++.++..|..|-++|..
T Consensus 14 ~dGLrAq~ECrN~T~lLq~qLTqAQe~-l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 14 RDGLRAVMEARNVTHLLQQELTEAQKG-FQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455555566654332222111112222 34446666666666666666655544442 12244444444445555555
Q ss_pred hHHHHHHHHHHHh
Q 019366 300 NDHELEKLKHELR 312 (342)
Q Consensus 300 ~~~~l~~lk~eL~ 312 (342)
+-.++++|..+-+
T Consensus 90 a~ae~erlr~~~~ 102 (121)
T 3mq7_A 90 ASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhch
Confidence 5555555554444
No 54
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.72 E-value=26 Score=27.82 Aligned_cols=68 Identities=24% Similarity=0.244 Sum_probs=49.6
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHH
Q 019366 132 EQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELE 207 (342)
Q Consensus 132 eQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq 207 (342)
+|++...-|=+.|+-+.=.+||+...|.+.+..|+... ..-+.|....+|..||..|.....+-..+.
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~--------~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG--------KSRLGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667778888888899999999999999887652 123556667778888888877766544433
No 55
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=68.62 E-value=23 Score=28.22 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 288 EMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 288 stl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
..|..||++|..++.++.+|+.+|-
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 5578899999999999999998874
No 56
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=68.19 E-value=25 Score=27.65 Aligned_cols=59 Identities=17% Similarity=0.123 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
|...++.+++...+=..+...|.+++.--..++|+++-.|.-|-=|..-.++.+..+|+
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34455566666655556666667777767777777777666555555555555544443
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=67.91 E-value=9 Score=29.43 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=8.8
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 019366 292 MLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 292 ~LQqeL~~~~~~l~~lk~eL 311 (342)
.|..+...+..++..|..||
T Consensus 47 ~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 47 STTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 58
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=67.57 E-value=11 Score=29.46 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 019366 254 KLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELR 312 (342)
Q Consensus 254 eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~ 312 (342)
++..+++++.-|..++.++... ...+++.+|..|..|..+|.+.+.++++.-.+.+
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~---~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDS---LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp --------CTTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555553 2446777788888888888887777776544433
No 59
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=67.13 E-value=6 Score=40.33 Aligned_cols=166 Identities=11% Similarity=0.190 Sum_probs=51.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHH-hhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHH
Q 019366 146 VTFAKREQEIAELKSAVRDLKAQLKPPLMQARR-LLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKA 224 (342)
Q Consensus 146 ~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~-~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKr 224 (342)
.+-..-=-|+|+++++-++=|.....--..|.. --.--.+-..-..|...|...+.+.+.++.+|.... -+...
T Consensus 293 ~~r~~d~~e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~ 367 (575)
T 2i1j_A 293 RRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQ-----DMILR 367 (575)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HC---
T ss_pred HccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHH
Confidence 333344468888888887766552111111100 000011222345566667777777777777776654 34456
Q ss_pred HHHHHHHHHHHHHHHhhhhhc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHH
Q 019366 225 LMAKCKTLQEENDEIGRQNEE--GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDH 302 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~lse--Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~ 302 (342)
|..+.+..++|=+.|-+...+ --+.+|+..-..+.+--..|.....+....+..|.+++++--.....||+++..++.
T Consensus 368 l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 368 LEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARR 447 (575)
T ss_dssp --------------------------------------------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888765532 234555555555666666677777888888888888888888888889999999998
Q ss_pred HHHHHHHHHhhhhh
Q 019366 303 ELEKLKHELRQKSV 316 (342)
Q Consensus 303 ~l~~lk~eL~~~~~ 316 (342)
...+-+.+|-....
T Consensus 448 ~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 448 KQDEAAAALLAATT 461 (575)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888765444
No 60
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=66.33 E-value=43 Score=25.80 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=30.8
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 273 YKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
.+++..|+...+.+...|..|..++.....++..++..|..
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777888888888888888877765
No 61
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=65.66 E-value=14 Score=26.79 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=7.3
Q ss_pred hhhhHHHhhHHHHHHHHHHH
Q 019366 278 GLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 278 eLdeEvE~lqstl~~LQqeL 297 (342)
.|..+...|.+.|..|+.++
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 62
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.56 E-value=74 Score=30.28 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH
Q 019366 261 LNAELKSQFEALYKHMDGLTDDVE 284 (342)
Q Consensus 261 ~~eELrk~~~eL~~~l~eLdeEvE 284 (342)
.++||..+..+++.-|+++..+|+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 63
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=64.17 E-value=43 Score=26.18 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH-------HHHHHHHHHhHHHHHHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMV-------LMLREKLEENDHELEKLK 308 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl-------~~LQqeL~~~~~~l~~lk 308 (342)
++|+.++-..+..++.+|..|++-...-..++.|+-++..-| .-|+.++.....++..|+
T Consensus 17 ~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 17 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888999999999999888777777777776655443 456666666666666554
No 64
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.93 E-value=78 Score=27.65 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcc
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLE 318 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~~ 318 (342)
|++-+..|....-+.......+..|+.+|..++..+..++.+|.....+.
T Consensus 96 FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 96 FDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777778888888888888888888777665543
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=62.67 E-value=56 Score=25.91 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
.+||..+--.=..+.-|+-.+++|-.--..|..+++.+.+....|.+++.+.+.+...-+..|
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555554444445555554444444444333
No 66
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=62.27 E-value=73 Score=27.07 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHh
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEN 300 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~ 300 (342)
|+.+.+-..+.+++|+.++..|...|.+...++|++....-.|+..+..+
T Consensus 62 L~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 62 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 33333333445777778888888888888888888766666666655544
No 67
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=62.02 E-value=22 Score=27.30 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019366 260 SLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLE 298 (342)
Q Consensus 260 ~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~ 298 (342)
.++.+|.....+|......+..+.+.|...|..|+.+|.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555554444444444443
No 68
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=61.01 E-value=97 Score=28.08 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 019366 83 LELEAAKSEIQKWHS 97 (342)
Q Consensus 83 ~~l~~a~~e~~kW~~ 97 (342)
.+.+.-.+++..|=.
T Consensus 14 ~eYe~~as~Ll~WI~ 28 (235)
T 2odv_A 14 QEYRELVLLLLQWMR 28 (235)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555544
No 69
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.93 E-value=23 Score=25.71 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 019366 275 HMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHE 310 (342)
Q Consensus 275 ~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~e 310 (342)
++.+|...++.+...-..|+.++.....++..|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555544443
No 70
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=60.91 E-value=35 Score=26.87 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=24.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
.||+.||..+.......-+|-.+++.|..=|..|.-.+|.++-.|..++++-+..+..+
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665433333333333333333333333333333443333444444444444433
No 71
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.73 E-value=15 Score=26.63 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=25.6
Q ss_pred hhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 280 TDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 280 deEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
..|+|.|+..+..|++++.....+++.|+..|.+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777777777777777777777777777764
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.53 E-value=1.2e+02 Score=28.97 Aligned_cols=43 Identities=12% Similarity=-0.079 Sum_probs=21.6
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 273 YKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
+....++..+.+++.......|.++++.+.+.++++.+++...
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 3334444445555555555555555555555555555554443
No 73
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=60.37 E-value=54 Score=24.97 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=38.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDH 302 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~ 302 (342)
++..++..+--.......+...+..|.+=|..+.+|++..++.+...+..|.....
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666667777777888888888877777777777766543
No 74
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=60.09 E-value=14 Score=29.61 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 262 NAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 262 ~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
+.-|.+++.++.. ....+++.+|..|..|..+|.+.+.++++.-.+-
T Consensus 21 ~~~LE~~l~e~E~---~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EY 67 (95)
T 3mov_A 21 SRACLERIQELED---LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDY 67 (95)
T ss_dssp CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443 3455778888888888888888888887654443
No 75
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=59.95 E-value=87 Score=30.61 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019366 194 NLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALY 273 (342)
Q Consensus 194 ~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~ 273 (342)
..++....+++++...|+.=.|--+...-+.|+.....|..-.+ ....+++.++++.
T Consensus 3 ~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~-----------------------~~~~~~~~~~~~~ 59 (354)
T 3d5a_X 3 DKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIG-----------------------LIREYRKVLEDLE 59 (354)
T ss_dssp HHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 45666677777777777776665565444444444333332111 1122333333333
Q ss_pred HHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 274 KHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 274 ~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
...+=+. ..++....++++.....+++.+..+|...
T Consensus 60 ~~~el~~-----D~e~~~~a~~e~~~l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 60 QAESLLD-----DPELKEMAKAEREALLARKEALEKELERH 95 (354)
T ss_dssp HHHTSTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333221 22355567888888888888888776643
No 76
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.54 E-value=21 Score=26.20 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=12.8
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 277 DGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 277 ~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
.+|..+++.+...-..|+.++.....++..|+.
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444443444444433
No 77
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=59.26 E-value=66 Score=25.60 Aligned_cols=74 Identities=7% Similarity=0.192 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHh
Q 019366 222 GKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEN 300 (342)
Q Consensus 222 GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~ 300 (342)
-.+|+.....|..|.+.|-.. |..++.+.......-..+-+.|..+..-+.++.++..-+...+..-+.+|.+.
T Consensus 20 E~~L~~eL~~lEke~~~l~~e-----l~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 20 EERLIQELEDVEKNRKVVAEN-----LEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778888888888888774 45667777777777777777788888888888888887666666666665544
No 78
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=58.75 E-value=14 Score=34.70 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
+.+|...+..|....+. |.+.|+.++.++.+|+.||++..
T Consensus 56 l~eL~~ql~~L~arNe~-------L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSK-------LMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555555 45555555555555555555443
No 79
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.44 E-value=79 Score=26.26 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCc------hhhHHHHHHHHHHHHHHHHHhhhh
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANS------KMGKALMAKCKTLQEENDEIGRQN 243 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS------~~GKrLMAKCR~LqeENEELGr~l 243 (342)
.+|+.+++..+.|++..+.+..+..-+=+- ..-..|-.++|.|.+.|.+|-|..
T Consensus 13 ~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 13 QRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 355666666666666555443221100000 222345567777777777777643
No 80
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.09 E-value=26 Score=34.13 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHH
Q 019366 256 ALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEK 306 (342)
Q Consensus 256 AlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~ 306 (342)
...+..++.|+.+..++.+.+..+..+++.+++.+..-+..-++.+.++..
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555444444444444444444443
No 81
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=57.83 E-value=1.5e+02 Score=29.31 Aligned_cols=96 Identities=8% Similarity=0.075 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhc--------ccchhhhHHHHHHHHHHHHH
Q 019366 194 NLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE--------GETHQLSVKLALQKSLNAEL 265 (342)
Q Consensus 194 ~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lse--------Gria~Le~eLAlqK~~~eEL 265 (342)
..+++...-+++.+..|..--|.++-..=..|+.|=+.|+.+.+..|..+.. +++..|+..-..+......=
T Consensus 9 r~v~dl~~Wl~E~~~~L~S~d~GkDL~sVe~LLqKH~~lE~eI~a~~~~v~~l~~~a~~~~~~~~L~~~y~~L~~~a~~R 88 (450)
T 3r6n_A 9 HVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIYQLEEEYENLLKASFER 88 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777788888888888877788888888888888777755532 24455666666666666666
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHH
Q 019366 266 KSQFEALYKHMDGLTDDVERSNEM 289 (342)
Q Consensus 266 rk~~~eL~~~l~eLdeEvE~lqst 289 (342)
+..++.|++|+.+.+++.-=+++.
T Consensus 89 r~~Le~L~qFl~d~~ee~~Wi~EK 112 (450)
T 3r6n_A 89 MDHLRQLQNIIQATSREIMWINDC 112 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888888877666655
No 82
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=57.15 E-value=66 Score=24.94 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHH
Q 019366 225 LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSL 261 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~ 261 (342)
+.+|.+-++.+|.+|-. +|..|+..|.-.+..
T Consensus 5 ~~~kLq~~E~~N~~Le~-----~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEG-----QLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHH
Confidence 34455555666655433 444555554444433
No 83
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=56.99 E-value=1.4e+02 Score=29.28 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019366 196 VEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKH 275 (342)
Q Consensus 196 Lee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~ 275 (342)
++....+++++...|+.-.|--+...-+.|+.....|..-.+ ....+++..+++...
T Consensus 27 l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~-----------------------~~~~~~~~~~d~~~~ 83 (365)
T 1gqe_A 27 YDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVD-----------------------TLDQMKQGLEDVSGL 83 (365)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHH
Confidence 344556666677777766665565544444444333332211 112233334444433
Q ss_pred HhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 276 MDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 276 l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
.+-+.+ +...++....++++.....++..+..
T Consensus 84 ~el~~~--e~D~e~~~~a~~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 84 LELAVE--ADDEETFNEAVAELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 12334556677777777777776543
No 84
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=55.56 E-value=90 Score=31.50 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 287 NEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 287 qstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
.+.|..|+..+......|..|+..+..+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777666543
No 85
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.50 E-value=1.6e+02 Score=29.08 Aligned_cols=52 Identities=8% Similarity=0.187 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 019366 259 KSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHE 310 (342)
Q Consensus 259 K~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~e 310 (342)
...+..|..++..++..+...+..+..|+..+..++.+|...+..+..|...
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455566666666677777777777777766666666666666666655443
No 86
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.33 E-value=42 Score=28.85 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
|++-+..|....-+.......+..|+.+|..++.-+..++..|.....
T Consensus 84 FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 84 FDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888777777777778888888888888888888877765443
No 87
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.04 E-value=31 Score=28.85 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 019366 251 LSVKLALQKSLNAELKSQFEALYKHMDGLTDD 282 (342)
Q Consensus 251 Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeE 282 (342)
|-..|....+........+.+|..-+..++++
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~ 60 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIV 60 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 88
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=53.52 E-value=63 Score=26.02 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~ 269 (342)
.+|..+|.+..++++.....-.+ +.|....+.+|=-+|..-+- +.+|+-....++-|+..+
T Consensus 18 kkL~~Ki~el~~ei~ke~~~reg-------------l~Km~~vY~~nP~~GD~~s~------~~~L~e~~~kid~L~~el 78 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREA-------------LKKMKDVYEKTPQMGDPASL------EPQIAETLSNIERLKLEV 78 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH-------------HHHHHHHHHHCGGGCCGGGS------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHcCCccCCHHHH------HHHHHHHHHHHHHHHHHH
Confidence 45666777777776666655333 44888888888888875442 555555555555555555
Q ss_pred HHHHHHHhhh
Q 019366 270 EALYKHMDGL 279 (342)
Q Consensus 270 ~eL~~~l~eL 279 (342)
..+..++.++
T Consensus 79 ~K~q~~L~e~ 88 (98)
T 2ke4_A 79 QKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 89
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=52.93 E-value=16 Score=26.55 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHH
Q 019366 270 EALYKHMDGLTDDVERSNEMVLMLREKLEENDHE 303 (342)
Q Consensus 270 ~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~ 303 (342)
.+.+.||.++-.+.+.+...+..|++++..++.+
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678888888888888777776676666665543
No 90
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=52.34 E-value=18 Score=28.49 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 258 QKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 258 qK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
...-|.+|+.+++.+..-+++--.+-++++..|..+.+.|--+=.++..|...|.+
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33445666666666666666666666777777777777777777777766666654
No 91
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=51.92 E-value=11 Score=29.73 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 289 MVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 289 tl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
++..||.+|..++.++.+|+..+.-++-
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~k 46 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNK 46 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7788888888888888888877776665
No 92
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.75 E-value=13 Score=27.18 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhH
Q 019366 270 EALYKHMDGLTDDVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 270 ~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~ 301 (342)
.+|+.-+..|..+...|...|..|+.++...+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 93
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=51.75 E-value=2e+02 Score=28.96 Aligned_cols=50 Identities=8% Similarity=0.067 Sum_probs=26.4
Q ss_pred HHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019366 118 NYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKA 167 (342)
Q Consensus 118 ~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~ 167 (342)
..|+.|+..-.+|.+.-.++..-.+.+...+..++.++.+....|.+...
T Consensus 100 ~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~ 149 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNT 149 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 34444444444444444444444455556666666666666665555443
No 94
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=49.60 E-value=11 Score=35.36 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhh
Q 019366 230 KTLQEENDEIGRQN 243 (342)
Q Consensus 230 R~LqeENEELGr~l 243 (342)
..|++|..-|.+.+
T Consensus 27 ~~~~~e~~~l~~~~ 40 (251)
T 3m9b_A 27 EQLRREAAVLREQL 40 (251)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHhh
Confidence 33444544444444
No 95
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=49.23 E-value=59 Score=25.39 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=57.8
Q ss_pred HhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHH
Q 019366 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (342)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvl 144 (342)
=.||.-+......=+.+..++..++..++.|+.-+++|-.. -..+++++..||.-= ..++
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~-------R~~~E~d~~~Lrkdv-------------D~a~ 62 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ-------REEAENTLQSFRQDV-------------DNAS 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTTH-------------HHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhH-------------HHHH
Confidence 36888888888888899999999999999999977765443 123444544443321 2444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhc
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQL 169 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~~ 169 (342)
+.| +.+|..+.-++..|.-||..|
T Consensus 63 l~r-~dLE~kvesL~eEl~fLkk~h 86 (86)
T 3swk_A 63 LAR-LDLERKVESLQEEIAFLKKLH 86 (86)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 444 667777888888877776543
No 96
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=49.12 E-value=98 Score=24.57 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=45.3
Q ss_pred CChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH-HHHHHHH
Q 019366 111 PEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKS-AVRDLKA 167 (342)
Q Consensus 111 ~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s-~l~dlk~ 167 (342)
.+...+...|..|+..|+.|-++|.+..+-+..+-.-|...+.|...+.. .-..||.
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~e 61 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQRE 61 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34567788899999999999999988888888888888888888888865 4445543
No 97
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=47.91 E-value=27 Score=25.48 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=16.3
Q ss_pred HHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 274 KHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 274 ~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
+++.+|...++.+...-..|..++.....++..|+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444444444444444433
No 98
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=47.58 E-value=56 Score=26.45 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=28.3
Q ss_pred hHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHH
Q 019366 62 GMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHS 97 (342)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~ 97 (342)
..|++|++|++.--..+-.++..+..---.|++-..
T Consensus 6 anIlrLKeSI~~TNeAV~EVt~glsqlaVAIqaIQD 41 (89)
T 1wp7_A 6 DNINKLKSSIESTNEAVVKLQETAEKTVYVLTALQD 41 (89)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999988888777776666766544
No 99
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.58 E-value=1e+02 Score=25.18 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 287 NEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 287 qstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
|.||..=.-+-...+..+..|+.+|.-+
T Consensus 68 N~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 68 NNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444455555565655443
No 100
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=46.38 E-value=1.3e+02 Score=25.75 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=55.2
Q ss_pred hhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 243 NEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 243 lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
..+.||..|+.+|.-.+...++--..|.+..+-+.-+..+.++.-.-+-.....+..+..++.-.-+.|...+.
T Consensus 49 ~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45668999999999999999999999999988888888888877666666666666666555555555544443
No 101
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=45.09 E-value=72 Score=25.71 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHH
Q 019366 260 SLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHE 303 (342)
Q Consensus 260 ~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~ 303 (342)
.-.+.|.+..+.+...+..+..+++.+...+-.++++|++....
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556667777777777777777777777777777777665543
No 102
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.98 E-value=1.3e+02 Score=24.95 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=23.4
Q ss_pred HhhhhhHHHhhHHHHHHHHHHHHHhH-------HHHHHHHHHHhhhhh
Q 019366 276 MDGLTDDVERSNEMVLMLREKLEEND-------HELEKLKHELRQKSV 316 (342)
Q Consensus 276 l~eLdeEvE~lqstl~~LQqeL~~~~-------~~l~~lk~eL~~~~~ 316 (342)
..+.-.-|..|...|..|+.+|...+ .+.++|..+++....
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555554 446777777776544
No 103
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.62 E-value=1.1e+02 Score=23.81 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 019366 193 KNLVEEKDKKVKELEENIA 211 (342)
Q Consensus 193 R~eLee~~~klk~aq~eL~ 211 (342)
...+.+...++..++....
T Consensus 9 ~~~~~~~~~~l~~L~~~~~ 27 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIG 27 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 104
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=44.58 E-value=82 Score=22.44 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 187 EEFRRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 187 lef~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
.++..|.++++..++++..++..|+|.+
T Consensus 20 eelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667888999999999999999998875
No 105
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.63 E-value=2.2e+02 Score=28.32 Aligned_cols=43 Identities=5% Similarity=0.143 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhhcccCCCc--hhhHHHHHHHHHHHHHHHHH
Q 019366 197 EEKDKKVKELEENIAAVSFTANS--KMGKALMAKCKTLQEENDEI 239 (342)
Q Consensus 197 ee~~~klk~aq~eL~A~kFtPqS--~~GKrLMAKCR~LqeENEEL 239 (342)
+..+.+++.++++|.....+-.+ ..=+.++...|.=+....+.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dn 107 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNN 107 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 33444555555555544433333 34455556555555444333
No 106
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=43.03 E-value=1.4e+02 Score=24.51 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 250 QLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 250 ~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
..+-........-.+|...+.++..-+.+..+....++..-.-|++++...+.++..+..
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555556666666666666666666666666666666666666665543
No 107
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=42.92 E-value=12 Score=38.23 Aligned_cols=90 Identities=14% Similarity=0.236 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHH----HHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHH
Q 019366 222 GKALMAKCKTLQEEND----EIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 222 GKrLMAKCR~LqeENE----ELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL 297 (342)
-.-|+.+++.+++|.. +|-+ ++.++..|+-++.......+.|.+...++...+..|....+.-.+.=..|.+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~ 414 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLE--AQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEI 414 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHC--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3568889998888854 5555 567888999999999999999999999998888887776666555555555555
Q ss_pred HHhHHHHHHHHHHHhh
Q 019366 298 EENDHELEKLKHELRQ 313 (342)
Q Consensus 298 ~~~~~~l~~lk~eL~~ 313 (342)
..+...+.+|..+.+.
T Consensus 415 ~~~~~~~~~~~~~~~~ 430 (575)
T 2i1j_A 415 RAKQEEVSRIQQEVEL 430 (575)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555444333
No 108
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=42.86 E-value=95 Score=25.77 Aligned_cols=118 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHH---HHHHHHHHHhhhhcccCC-Cc-
Q 019366 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK---DKKVKELEENIAAVSFTA-NS- 219 (342)
Q Consensus 145 l~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~---~~klk~aq~eL~A~kFtP-qS- 219 (342)
+.|.+..+++++++...++.++.. +..|...+... ..++.+...-+..+++-| .+
T Consensus 1 ~~~m~~~~~~l~ql~~~~qql~~~--------------------~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~ 60 (151)
T 2zdi_C 1 MIRMAQNNKELEKLAYEYQVLQAQ--------------------AQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKP 60 (151)
T ss_dssp ---CCSSTTHHHHHHHHHHHHTTT--------------------THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred CcchhhhHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHhhhhhcccc-----------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 220 ----KMGKALMAKCKTLQEENDEIGRQNEEGET-----------------HQLSVKLALQKSLNAELKSQFEALYKHMDG 278 (342)
Q Consensus 220 ----~~GKrLMAKCR~LqeENEELGr~lseGri-----------------a~Le~eLAlqK~~~eELrk~~~eL~~~l~e 278 (342)
+.| +..--.|+| ..++--+...+...+.+.+..+.+..-+..
T Consensus 61 ~ilvplg-----------------~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~ 123 (151)
T 2zdi_C 61 EILVPIG-----------------AGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAE 123 (151)
T ss_dssp EEEEECS-----------------SSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcC-----------------CCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHhhHHHHHHHHHHHHH
Q 019366 279 LTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~ 299 (342)
+.+.+..+...|-.++++...
T Consensus 124 l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 124 LEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp HHHHHHTHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 109
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.73 E-value=96 Score=25.35 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=28.2
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 019366 245 EGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDV 283 (342)
Q Consensus 245 eGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEv 283 (342)
.++|..||.+|+-.|..+.-.-..|++|-++=-.||-|+
T Consensus 81 q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888887777777777777777766666655
No 110
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.45 E-value=63 Score=23.62 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=15.4
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHH
Q 019366 271 ALYKHMDGLTDDVERSNEMVLMLREKLEENDHE 303 (342)
Q Consensus 271 eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~ 303 (342)
+|..-+..|..+...|...|..|+.++......
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444455555555544443
No 111
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=42.03 E-value=62 Score=22.96 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHH
Q 019366 259 KSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLRE 295 (342)
Q Consensus 259 K~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQq 295 (342)
|.|+.+|....++|+.-+.+|++-+.-+|..=.+|.|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3566677777777666666666655554444444444
No 112
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.07 E-value=85 Score=22.44 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=23.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVE 284 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE 284 (342)
-+++||.++|.....++-|++..---.+++.-|+.++-
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeia 41 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIA 41 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHH
Confidence 36777777777777777777764444444444444443
No 113
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=40.72 E-value=1.1e+02 Score=30.22 Aligned_cols=27 Identities=26% Similarity=0.339 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 288 EMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 288 stl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
++....++++.....+++.+..+|...
T Consensus 87 e~~~~a~~e~~~l~~~l~~le~~l~~l 113 (371)
T 1zbt_A 87 ELEEMAKEELKNSKVAKEEYEEKLRFL 113 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466678888888888998888877643
No 114
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=40.68 E-value=3e+02 Score=27.81 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=39.7
Q ss_pred HHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH--------HHHHHHHhcCCc
Q 019366 118 NYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKS--------AVRDLKAQLKPP 172 (342)
Q Consensus 118 ~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s--------~l~dlk~~~~ps 172 (342)
++++.+-+.++.|..|..+...+-..+...|+..+--+.+-.. .|.++|+..+||
T Consensus 25 ~~~~~~~~~~~~l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~k~di~Elks~~~PP 87 (536)
T 3err_A 25 LDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPP 87 (536)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc
Confidence 4566666777888888888888877777788777666655544 455677777776
No 115
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.63 E-value=94 Score=21.90 Aligned_cols=19 Identities=32% Similarity=0.240 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 019366 290 VLMLREKLEENDHELEKLK 308 (342)
Q Consensus 290 l~~LQqeL~~~~~~l~~lk 308 (342)
+..+-+.|+.....|..++
T Consensus 35 ~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 35 INEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 116
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=39.89 E-value=1.1e+02 Score=25.33 Aligned_cols=45 Identities=24% Similarity=0.221 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHH-------HHHHHHHHHHHhHHHHHHHH
Q 019366 264 ELKSQFEALYKHMDGLTDDVERSNE-------MVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 264 ELrk~~~eL~~~l~eLdeEvE~lqs-------tl~~LQqeL~~~~~~l~~lk 308 (342)
+|-..|-+|++-+..+.++..+++. .|..|+.+|.+...+..+|.
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666665 34444444444444444443
No 117
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=38.82 E-value=65 Score=25.89 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=30.7
Q ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 275 HMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 275 ~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
...+|+.++..++..+-.|.+++.....++..++..++..
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777778888888888888888888888888776643
No 118
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=38.45 E-value=1.3e+02 Score=27.21 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=23.6
Q ss_pred hhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC
Q 019366 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (342)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~ 101 (342)
.++..|...+..|+..++.++.|+.++++++..+..
T Consensus 74 ~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~ 109 (369)
T 4dk0_A 74 TRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQ 109 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555666666666666777777777788776654
No 119
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=38.27 E-value=80 Score=30.91 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
..|+.+..++.+-+.++...++.++..+..+.++|.+...+..+|-++++....
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345555555555556666666666666666777777766667777777766543
No 120
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.59 E-value=74 Score=30.94 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 261 LNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 261 ~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
....++.+...|.+-+.+++.+++.++..+..+++++.+.+....+|-++++....
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45677788888888888888888888888888888888888888888888876543
No 121
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.39 E-value=75 Score=26.14 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=27.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 019366 245 EGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDV 283 (342)
Q Consensus 245 eGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEv 283 (342)
.++|..||.+|+-.|..+.-.-..|++|-++=-.||-|+
T Consensus 83 q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 83 QEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777666666554
No 122
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=37.24 E-value=86 Score=30.12 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=19.4
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 272 LYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 272 L~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
++..|...+..+..|+..|..++.+|.+++.+|..|...+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555555555554443
No 123
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.24 E-value=1.7e+02 Score=23.95 Aligned_cols=63 Identities=21% Similarity=0.131 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------cccCCCc------------hhhHHHHHHHHHHHHHHHH
Q 019366 182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAA-----------VSFTANS------------KMGKALMAKCKTLQEENDE 238 (342)
Q Consensus 182 DPAVNlef~rLR~eLee~~~klk~aq~eL~A-----------~kFtPqS------------~~GKrLMAKCR~LqeENEE 238 (342)
.|.-+..+..||.+|+..+.+...+..+... -.|+|.. ..=+..-.....||.|++-
T Consensus 7 ~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~er 86 (100)
T 1go4_E 7 FLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECER 86 (100)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhh
Q 019366 239 IGRQNE 244 (342)
Q Consensus 239 LGr~ls 244 (342)
|-..+.
T Consensus 87 Lr~~v~ 92 (100)
T 1go4_E 87 LRGLLR 92 (100)
T ss_dssp HHHHHT
T ss_pred HHHHHH
No 124
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=37.00 E-value=3.7e+02 Score=27.71 Aligned_cols=197 Identities=19% Similarity=0.250 Sum_probs=107.7
Q ss_pred HHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHH
Q 019366 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAA 143 (342)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnv 143 (342)
+-.|.+-.+.|.+.|..|...|+.=..+.++.+..|.+. . +..|.. .-...|+..-.+++.-|..+..=-..
T Consensus 443 ~~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~-w-----~r~~S~--~~~~~l~~~~~~~~~~l~~A~~sD~~ 514 (704)
T 2xs1_A 443 IKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKER-W-----QRTPSN--ELYKPLRAEGTNFRTVLDKAVQADGQ 514 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-C-----CSCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C-----CCCCcH--HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444555566777778888888888888888999977652 1 111211 12345666677777788888777777
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhH
Q 019366 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGK 223 (342)
Q Consensus 144 ll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GK 223 (342)
+...+..-+.-|.-|..-..++... -|++...-..-.++.|. .+..+-++|...+.+-+..-.+|.+.+ +..+.+
T Consensus 515 v~~~~~~~~~~l~~L~~~~~~l~~~-~p~~~~~~~~~~~~~~~-~L~~~l~~l~~l~~~R~~~~~~lk~~~---ddI~~~ 589 (704)
T 2xs1_A 515 VKECYQSHRDTIVLLCKPEPELNAA-IPSANPAKTMQGSEVVN-VLKSLLSNLDEVKKEREGLENDLKSVN---FDMTSK 589 (704)
T ss_dssp HHHHHHTTHHHHHHHTSCHHHHHHT-SCCCCCCGGGSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhh-CccCCCcccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc---cCccHH
Confidence 7777777777776666555566554 23321110111223322 223444555556666666666776654 333333
Q ss_pred HHHHHHH-HH-HHH---HHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019366 224 ALMAKCK-TL-QEE---NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYK 274 (342)
Q Consensus 224 rLMAKCR-~L-qeE---NEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~ 274 (342)
-|.+.-+ .. .+| .+||++.... -+..++..+..|...+.+++..+.++..
T Consensus 590 ll~~~~~~~~~~~e~lf~~eL~k~~~~-~~~~i~~~~~~Q~~ll~~i~~~~~~f~~ 644 (704)
T 2xs1_A 590 FLTALAQDGVINEEALSVTELDRVYGG-LTTKVQESLKKQEGLLKNIQVSHQEFSK 644 (704)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332211 01 111 1344442221 2345666666777777777766655533
No 125
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=36.90 E-value=1.1e+02 Score=22.15 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH
Q 019366 255 LALQKSLNAELKSQFEALYKHMDGLTDDVERSNEM 289 (342)
Q Consensus 255 LAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqst 289 (342)
|...|.-+.-|-....+|...+.+++.|++|++..
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33444444444444555555555555555555443
No 126
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=36.69 E-value=1.4e+02 Score=26.70 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHH
Q 019366 68 RESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVT 147 (342)
Q Consensus 68 r~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~r 147 (342)
+..|+.-+..|+.|.+++...+..-..--+.+..+-.-|++++.---+- .||..|++-+..+.++..++.++-......
T Consensus 29 ~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~-~yI~llrErea~lEqkVaeq~e~Ve~e~q~ 107 (169)
T 3k29_A 29 RRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMK-AYIKVVAIQLSEEEEKVNKQKENVLAASKE 107 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHhc
Q 019366 148 FAKREQEIAELKSAVRDLKAQL 169 (342)
Q Consensus 148 LA~KEQEiqel~s~l~dlk~~~ 169 (342)
|....++++..+.+..-+ ..|
T Consensus 108 Le~ar~el~qArke~eKf-elH 128 (169)
T 3k29_A 108 LERAEVELTKRRKEEEKT-RLH 128 (169)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHH
No 127
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=36.57 E-value=82 Score=23.64 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 288 EMVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 288 stl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
..|-.|+.+-.+++++++||..-|.+-.
T Consensus 25 ~kv~~Le~~c~e~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 25 AKIQHLEFSCSEKEQEIERLNKLLRQHG 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344455555555555555555555433
No 128
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=36.50 E-value=1.7e+02 Score=23.72 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=20.0
Q ss_pred hhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 280 TDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 280 deEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
+.|+..+++++-..++.-......+..+..+...
T Consensus 67 ~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~ 100 (107)
T 2no2_A 67 QRELQVLQGSLETSAQSEANWAAEFAELEKERDS 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666655555555555554433
No 129
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.16 E-value=1.6e+02 Score=23.16 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHH
Q 019366 227 AKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267 (342)
Q Consensus 227 AKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk 267 (342)
.|.+-++.+|.+|- ++|..|+..|.-.+..-+-++.
T Consensus 13 ~klq~~E~rN~~Le-----~~v~~le~~Le~s~~~q~~~~~ 48 (79)
T 3cvf_A 13 QKVQDLETRNAELE-----HQLRAMERSLEEARAERERARA 48 (79)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666654 3666777776666554444433
No 130
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=36.13 E-value=1.1e+02 Score=21.49 Aligned_cols=49 Identities=6% Similarity=0.090 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL 297 (342)
..|+..+...+......+..++++-.-+..+.++++...+.|..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555444444444443
No 131
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=36.00 E-value=62 Score=26.82 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHH
Q 019366 286 SNEMVLMLREKLEENDHELEKLKHE 310 (342)
Q Consensus 286 lqstl~~LQqeL~~~~~~l~~lk~e 310 (342)
+-+.|..|+++++..+.+++.|+.+
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 132
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.94 E-value=1.5e+02 Score=22.91 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
+.+...+--...-|.+|+.++..+..-|++--.+-++++..|..+.+.|.-+=.++..|...|.+
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55566666666667788888888888888888888888888888888888888888877777665
No 133
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=35.78 E-value=1.3e+02 Score=23.05 Aligned_cols=45 Identities=22% Similarity=0.365 Sum_probs=33.2
Q ss_pred HHhhhHhhHHHHHHHHHHHHhHH----HHHHHHHHhHHHHHHHHHHHHH
Q 019366 119 YLQTLKSSEEMLKEQLEKAKKKE----AAFIVTFAKREQEIAELKSAVR 163 (342)
Q Consensus 119 ~l~~lk~sE~~LkeQl~eakrRE----nvll~rLA~KEQEiqel~s~l~ 163 (342)
+|.+++.-.++|..++.+...|= .-+...|+.+|.++++++..+.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888887772 3456677778888877777654
No 134
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.63 E-value=60 Score=23.58 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=4.8
Q ss_pred hhhhhHHHhhHHH
Q 019366 277 DGLTDDVERSNEM 289 (342)
Q Consensus 277 ~eLdeEvE~lqst 289 (342)
..|..-.++|-++
T Consensus 19 ~~L~~rN~rL~~~ 31 (51)
T 3m91_A 19 DSLAARNSKLMET 31 (51)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333343333
No 135
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=35.51 E-value=1.2e+02 Score=25.08 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 270 EALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 270 ~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
.-|...+.++++.+..++.++..|...+...+..+....+++-+.+|
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~ 130 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNV 130 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 34556666777777777777777777777777777766677766666
No 136
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=35.38 E-value=1.7e+02 Score=24.12 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 262 NAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 262 ~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
|..|-+.=..|..-|+=|...+|.+.+++..++.+++.+..++++++......
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L 70 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSIL 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454555566667777777777788888888888888777777777554433
No 137
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=35.10 E-value=84 Score=22.46 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=21.4
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 279 LTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
+++-|++|.+++-.||-.+++.=.+.+--|..|.++
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555555544444443
No 138
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.88 E-value=2.6e+02 Score=29.03 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=22.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVE 284 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE 284 (342)
+|+-|..+|..+.+.+.-|++.++++..-|+.|+.||.
T Consensus 118 rIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 118 RIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556666666555555555555554
No 139
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.85 E-value=45 Score=30.27 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=14.1
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 273 YKHMDGLTDDVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 273 ~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
..-+...+.+++.+++.|..|.++....+.+++
T Consensus 33 ~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 33 SEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 333334444444444444444444444444443
No 140
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.06 E-value=1.2e+02 Score=22.28 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHH
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL 297 (342)
..+|..-+.+|..+...|...|..|+.|+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333333333
No 141
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.76 E-value=1.2e+02 Score=21.84 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNE 288 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqs 288 (342)
+-|-..+|-.|+-+-.|.+--+.|++++..|..++-++..
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777777666666443
No 142
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.71 E-value=1.8e+02 Score=23.06 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 269 FEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 269 ~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
-.++..-+..|..+...| +.+|.....++..|+..|-+
T Consensus 38 ~~e~~~r~~~Le~EN~~L-------r~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 38 NLETQHKVLELTAENERL-------QKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555553 34444444444444444443
No 143
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=33.65 E-value=1.4e+02 Score=21.76 Aligned_cols=34 Identities=3% Similarity=0.095 Sum_probs=16.4
Q ss_pred HhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 276 MDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 276 l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
|..|...|+.|++.|-.|+.++...+.+.+|-..
T Consensus 13 V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555555555544433
No 144
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.35 E-value=1.8e+02 Score=29.05 Aligned_cols=22 Identities=5% Similarity=0.181 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 019366 223 KALMAKCKTLQEENDEIGRQNE 244 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~ls 244 (342)
+-+..++..|.++..++.+.-.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhh
Confidence 4566677777777777766443
No 145
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=32.52 E-value=65 Score=26.27 Aligned_cols=29 Identities=34% Similarity=0.356 Sum_probs=18.1
Q ss_pred hHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 281 DDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 281 eEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
.+.|++++..-.|+.+|+....++.+|+.
T Consensus 61 adREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 61 HAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777666654
No 146
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=32.34 E-value=2.6e+02 Score=24.66 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHH
Q 019366 258 QKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKL 297 (342)
Q Consensus 258 qK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL 297 (342)
.+.+.++|.+....|...+..|+.+...++..+-.|+.+.
T Consensus 47 l~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~ 86 (174)
T 2p22_A 47 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANR 86 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888888777777776633
No 147
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=32.33 E-value=1.1e+02 Score=22.36 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=9.8
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHH
Q 019366 279 LTDDVERSNEMVLMLREKLEENDHEL 304 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~~~~~l 304 (342)
|..+|..|+..|-+|+.++...+..+
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 148
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=32.32 E-value=2.3e+02 Score=24.02 Aligned_cols=143 Identities=9% Similarity=0.083 Sum_probs=73.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh--ChhhHHHHHHHHHHHHH-----------------HHHHHHHHH
Q 019366 147 TFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL--DPAIHEEFRRLKNLVEE-----------------KDKKVKELE 207 (342)
Q Consensus 147 rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~Ll--DPAVNlef~rLR~eLee-----------------~~~klk~aq 207 (342)
.|....+.+.+|...+..+.....- ...+|..|. =|.+-..+..|...+.. ....+-.++
T Consensus 80 ~l~~i~~~~~~Y~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~d~~~~~~~~~~~~l~~~ll~~R 158 (258)
T 2yfa_A 80 LLGELGDTISAYKLSLNKMRQGYDA-TRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVR 158 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777666544211 122344433 12222223333333222 222233334
Q ss_pred HhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 019366 208 ENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE--GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVER 285 (342)
Q Consensus 208 ~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lse--Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~ 285 (342)
.....+..+|+......+.............|...+.. ..+.++..-+..-+.....+...+..+.....+|+.-...
T Consensus 159 ~~~~~fl~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~l~~~~~~l~~Y~~~~~~~~~a~~~~~~~~~~m~~~g~~ 238 (258)
T 2yfa_A 159 IDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGAD 238 (258)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777788888888888888888888777654 2334444444444444444444444444444444444444
Q ss_pred hHHHH
Q 019366 286 SNEMV 290 (342)
Q Consensus 286 lqstl 290 (342)
+...+
T Consensus 239 l~~~~ 243 (258)
T 2yfa_A 239 IVKRS 243 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 149
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.15 E-value=46 Score=24.68 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 019366 302 HELEKLKH 309 (342)
Q Consensus 302 ~~l~~lk~ 309 (342)
.+++.|+.
T Consensus 51 ~ev~~Lr~ 58 (63)
T 2dgc_A 51 NEVARLKK 58 (63)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 150
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.14 E-value=2.2e+02 Score=23.65 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=5.3
Q ss_pred HHHHHHHHHHh
Q 019366 230 KTLQEENDEIG 240 (342)
Q Consensus 230 R~LqeENEELG 240 (342)
..|+.|++-|.
T Consensus 18 e~Lkreie~lk 28 (120)
T 3i00_A 18 ERLYREISGLK 28 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 151
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=32.07 E-value=61 Score=25.79 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHh
Q 019366 261 LNAELKSQFEALYKHMDGLTDDVER 285 (342)
Q Consensus 261 ~~eELrk~~~eL~~~l~eLdeEvE~ 285 (342)
+..+|+..+++|..-|.+|++-|..
T Consensus 37 ~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 37 QEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 152
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=31.96 E-value=20 Score=24.28 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=22.3
Q ss_pred hHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 281 DDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 281 eEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
+.++.++..|..||+++.++..++..++.+|
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777778888888888888888777665
No 153
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=31.54 E-value=81 Score=24.68 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=11.5
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhH
Q 019366 279 LTDDVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~~~ 301 (342)
+++-|++|.++|-.||-.+++.=
T Consensus 5 lEEKv~~LE~sld~LQTrfARLL 27 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARIL 27 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554433
No 154
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.50 E-value=1.6e+02 Score=23.48 Aligned_cols=43 Identities=9% Similarity=0.250 Sum_probs=22.7
Q ss_pred hHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Q 019366 116 VINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAEL 158 (342)
Q Consensus 116 v~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel 158 (342)
+.++|..+++.--.+..+|.++..|=.-|+.-+-.++.++.++
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666555555555555555553
No 155
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=31.40 E-value=85 Score=24.12 Aligned_cols=30 Identities=7% Similarity=0.129 Sum_probs=18.6
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 279 LTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
|+.|.+.+|..|..|..+|.+.+.++++..
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql 32 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQL 32 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665543
No 156
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.09 E-value=1.5e+02 Score=21.44 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 019366 250 QLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVER 285 (342)
Q Consensus 250 ~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~ 285 (342)
.|..+++.....|+.|-..+++.-+-|..|.++|+.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333
No 157
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.87 E-value=59 Score=23.09 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=21.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKH 275 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~ 275 (342)
+|.+...+|+.-++.+.+|++.+.+|++.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777888888888888887777654
No 158
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.85 E-value=1.3e+02 Score=23.73 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366 135 EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (342)
Q Consensus 135 ~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~ 168 (342)
...+.||..+..+...+++|...|+.+|..|+..
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888888888888776544
No 159
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=30.70 E-value=41 Score=24.30 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=9.1
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 019366 293 LREKLEENDHELEKLKHEL 311 (342)
Q Consensus 293 LQqeL~~~~~~l~~lk~eL 311 (342)
|+.+...+..++..|+.++
T Consensus 34 L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 34 LENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444444455555544443
No 160
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=30.17 E-value=1.2e+02 Score=27.26 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=25.3
Q ss_pred HhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC
Q 019366 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (342)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~ 101 (342)
-.++..|...+..++..+++++.|+.++++++..+..
T Consensus 72 ~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~ 108 (341)
T 3fpp_A 72 KEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQT 108 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445556666666777777777777778888776654
No 161
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.08 E-value=50 Score=23.31 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHH
Q 019366 260 SLNAELKSQFEALYKHMDGLTDDVERSNEMVL 291 (342)
Q Consensus 260 ~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~ 291 (342)
.-+.+|-.++++|++-|..|+.-++.+++.+.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777766666655543
No 162
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=29.33 E-value=1.7e+02 Score=21.52 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 263 AELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 263 eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
.+|......++.++..++.+++.+..++..+-++...-+.-+..|+..+
T Consensus 9 ~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv 57 (65)
T 3m0d_C 9 AELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRV 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445555666666666777777777777766555544455555555443
No 163
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=28.77 E-value=1.5e+02 Score=20.91 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLM 292 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~ 292 (342)
|.|-+.++..+.+.+.+.... ..++..+...+++|...+-.
T Consensus 69 hel~tpl~~i~~~~e~l~~~~---~~~~~~i~~~~~~l~~~i~~ 109 (114)
T 3zcc_A 69 HDLRTPLTRIRLATEMMSEQD---GYLAESINKDIEECNAIIEQ 109 (114)
T ss_dssp HHHHHHHHHHHHHHHTSCGGG---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH
Confidence 667777777777666665432 22234455555555555443
No 164
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.57 E-value=2e+02 Score=22.03 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 019366 187 EEFRRLKNLVEEKDKKVKELEENIAAVSFT 216 (342)
Q Consensus 187 lef~rLR~eLee~~~klk~aq~eL~A~kFt 216 (342)
.+|..|-..|...+.++..++..|+.-.|-
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y 51 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFF 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 467788888888889999999998877763
No 165
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.24 E-value=94 Score=23.78 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 019366 275 HMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQ 313 (342)
Q Consensus 275 ~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~ 313 (342)
.++++-..+..=...|..|+..|..++.++..|+.+|.+
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 166
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=28.10 E-value=2.1e+02 Score=22.85 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=21.9
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 019366 279 LTDDVERSNEMVLMLREKLEENDHELEKLKHE 310 (342)
Q Consensus 279 LdeEvE~lqstl~~LQqeL~~~~~~l~~lk~e 310 (342)
|-.-+-.+.++.+.|=.++...+.++..+|..
T Consensus 49 L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~ 80 (93)
T 3t98_B 49 LSMAMQKIYQTFVALAAQLQSIHENVKVLKEQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566777778888888888887755
No 167
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=27.87 E-value=2.4e+02 Score=22.74 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=30.8
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHh----HHHHHHHHHHHhhhh
Q 019366 271 ALYKHMDGLTDDVERSNEMVLMLREKLEEN----DHELEKLKHELRQKS 315 (342)
Q Consensus 271 eL~~~l~eLdeEvE~lqstl~~LQqeL~~~----~~~l~~lk~eL~~~~ 315 (342)
+++--|..--.|+..+..+|+.|...=.+. ..+|.+|+.+|+++.
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334445556667788888888887765444 358999999998764
No 168
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.82 E-value=2.7e+02 Score=27.43 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=41.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh---C-hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019366 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL---D-PAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (342)
Q Consensus 144 ll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~Ll---D-PAVNlef~rLR~eLee~~~klk~aq~eL~ 211 (342)
++-.|-.+..+-..+...+..||+.++.-+.+...+.- | .++-.+...|+.+|.+.+.++.++.+++.
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666665443333322211 1 24455566778888888888888877773
No 169
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=27.57 E-value=1.6e+02 Score=22.57 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=18.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTD 281 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLde 281 (342)
.|..||.+|+..+..+...-..|++|-++=-.||.
T Consensus 13 ~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~ 47 (74)
T 2xv5_A 13 LLAEKEREMAEMRARMQQQLDEYQELLDIKLALDM 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665555555555555554444443
No 170
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=26.88 E-value=3.2e+02 Score=23.87 Aligned_cols=105 Identities=27% Similarity=0.354 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHH---HHHHHHHHHH----HHHhhhhhccc--------chhhh
Q 019366 188 EFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALM---AKCKTLQEEN----DEIGRQNEEGE--------THQLS 252 (342)
Q Consensus 188 ef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLM---AKCR~LqeEN----EELGr~lseGr--------ia~Le 252 (342)
++..|.+-++...+++++.|.+|.- .||+|- -|+..||.-| .|||+.-.+.- ...+=
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~i--------VgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEI--------VGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4677888888888999999998864 567664 3666666665 35555322111 11111
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhH
Q 019366 253 VKLALQKS-LNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEND 301 (342)
Q Consensus 253 ~eLAlqK~-~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~ 301 (342)
..-..+.+ ++-.+ +.+.+|+--+.+-|.=||-+-.||-+|.-+|..-+
T Consensus 84 krn~~qQnQQSlDi-RKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEk 132 (167)
T 4gkw_A 84 KRNSQQQNQQSLDM-RKLGELEADLKEKDSMVESLTETIGILRKELENEK 132 (167)
T ss_dssp HHHHHHHHHHHHHH-HHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHhHhhhhH-HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222 22233 33677777788888889999999999988887544
No 171
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=26.85 E-value=3.1e+02 Score=23.75 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=29.0
Q ss_pred hHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccC
Q 019366 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (342)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~ 101 (342)
++..|...+..|+..+++|+.|+.++++++..++.
T Consensus 58 ~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~ 92 (277)
T 2f1m_A 58 YQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGT 92 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56677788888999999999999999999886553
No 172
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.80 E-value=1.9e+02 Score=21.26 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=28.6
Q ss_pred HhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 276 MDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 276 l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
++++...+......+..-+.+|.+.+..+..|+.+|+..
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666677777777777888888888888888887653
No 173
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=26.79 E-value=1.1e+02 Score=26.88 Aligned_cols=73 Identities=26% Similarity=0.277 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhhhcccCCC-----------------chhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHH
Q 019366 196 VEEKDKKVKELEENIAAVSFTAN-----------------SKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQ 258 (342)
Q Consensus 196 Lee~~~klk~aq~eL~A~kFtPq-----------------S~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlq 258 (342)
|+..+.-+++++-+|..+.=-|+ +-+|+.+|...++|.. .
T Consensus 6 l~~~q~l~kele~eL~eLek~p~y~~~s~Y~~Qk~lWee~~~i~~~~m~~~~~lk~-------------------d---- 62 (154)
T 4fz4_A 6 VEEVQKVVKELEKELGELDKVPSYGDAQDYSYQKALWEEFLRIGKDNMDYASKMKA-------------------D---- 62 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCSCGGGHHHHHHHHHHHHHHHHHHHHTTSCCT-------------------T----
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHhhHHHHHHHHHHhh-------------------h----
Confidence 66666667777777777665555 2566666666665541 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHH
Q 019366 259 KSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREK 296 (342)
Q Consensus 259 K~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqe 296 (342)
+..+++.+..|++| +....+|+|-.+|.....+
T Consensus 63 ---~~~~kk~~~dL~dF--g~h~k~E~~tRqVa~YrkK 95 (154)
T 4fz4_A 63 ---DKFFHKVKGDLNDF--KYQIKVENYIRQVAELRKK 95 (154)
T ss_dssp ---CTTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 12567778899998 5557999998888766543
No 174
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.71 E-value=2.2e+02 Score=21.83 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=7.9
Q ss_pred HHHHhHHHHHHHHHHHH
Q 019366 146 VTFAKREQEIAELKSAV 162 (342)
Q Consensus 146 ~rLA~KEQEiqel~s~l 162 (342)
.+|+.+|.+|..+...+
T Consensus 29 ~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 175
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=26.57 E-value=1.8e+02 Score=22.75 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 267 SQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 267 k~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
++.++|..-+.+-.+|+++++.-|-.|...|.+--.-..+|+..+
T Consensus 3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~ 47 (74)
T 2q6q_A 3 QQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQN 47 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778888888888888888888865443334444443
No 176
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.28 E-value=75 Score=21.14 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019366 188 EFRRLKNLVEEKDKKVKELEENIAAVS 214 (342)
Q Consensus 188 ef~rLR~eLee~~~klk~aq~eL~A~k 214 (342)
+|..|++++-..++++..++-+++|.+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766654
No 177
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=26.25 E-value=2.8e+02 Score=23.08 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhh
Q 019366 191 RLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGR 241 (342)
Q Consensus 191 rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr 241 (342)
+|+.+-...+.+.+.+...+...+|.- .-|-.+.+-|...|..|..
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~-----~eL~~~~~~Le~~n~~L~~ 71 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRA-----EELEKAKQALEDQRKDLET 71 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555444333211 1244445555555655553
No 178
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=25.93 E-value=2.9e+02 Score=23.04 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 019366 228 KCKTLQEEND 237 (342)
Q Consensus 228 KCR~LqeENE 237 (342)
.-..|..+|+
T Consensus 30 eN~~Lk~e~e 39 (155)
T 2oto_A 30 ENKDLKARLE 39 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444444
No 179
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=25.93 E-value=2.7e+02 Score=22.75 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
+-|+.-|...|---++|-++-++|...+..+..+.+.-+.-|.-||..|..
T Consensus 7 a~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 7 AGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444433
No 180
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=25.52 E-value=3.3e+02 Score=23.58 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 019366 227 AKCKTLQEENDEIGRQ 242 (342)
Q Consensus 227 AKCR~LqeENEELGr~ 242 (342)
+||+.|.++..-+|+.
T Consensus 42 ~k~~eLEeeL~~v~~n 57 (155)
T 2efr_A 42 GKSAELEEELKTVTNN 57 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4666666666666653
No 181
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.51 E-value=3.5e+02 Score=23.92 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhccc
Q 019366 193 KNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGE 247 (342)
Q Consensus 193 R~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGr 247 (342)
+..-.+...+....+..|+ -+|+|+. |.++.+....|.++-...+.+.=
T Consensus 103 ~~L~~~~~~k~q~~~~~ls-~~~sp~~-----L~~~L~~a~~e~eeeS~~l~~~F 151 (192)
T 2p22_C 103 RILESKYVASWQDYHSEFS-KKYGDIA-----LKKKLEQNTKKLDEESSQLETTT 151 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTSSHHH-----HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCCHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333332 3788887 88888888888888777666553
No 182
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=25.43 E-value=73 Score=24.02 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH
Q 019366 253 VKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMV 290 (342)
Q Consensus 253 ~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl 290 (342)
..=.........+..++.||+.+|..++.+++.+..++
T Consensus 26 ~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~~~~~~ 63 (64)
T 3t97_C 26 LDQKRLDQELDFILSQQKELEDLLSPLEESVKEQSGTI 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33334444566777788888888888888887765443
No 183
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.40 E-value=53 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 285 RSNEMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 285 ~lqstl~~LQqeL~~~~~~l~~lk~eL 311 (342)
.+++.|..|++++.++..++..+..+|
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444443
No 184
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=25.35 E-value=1.7e+02 Score=25.37 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019366 223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMD 277 (342)
Q Consensus 223 KrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~ 277 (342)
..|++|..-||.=.|.|.+-+..-.|.+.-..+..-.+-+..+++.++.|.+||.
T Consensus 24 d~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 24 DTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777778888888888887777877777777777777777777777777774
No 185
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.21 E-value=1.1e+02 Score=23.43 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=5.2
Q ss_pred HHHhhhhhHHHh
Q 019366 274 KHMDGLTDDVER 285 (342)
Q Consensus 274 ~~l~eLdeEvE~ 285 (342)
+||..|..+...
T Consensus 47 ~yI~~L~~~~~~ 58 (80)
T 1nlw_A 47 LHIKKLEDSDRK 58 (80)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 186
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.98 E-value=1.2e+02 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=13.0
Q ss_pred HHHHHHhhhhhcccchhhhHHHHHHHHHHHH
Q 019366 234 EENDEIGRQNEEGETHQLSVKLALQKSLNAE 264 (342)
Q Consensus 234 eENEELGr~lseGria~Le~eLAlqK~~~eE 264 (342)
+||+.|-.. |-.+..+++..|+.|.+
T Consensus 38 ~EN~~Lh~~-----ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 38 KENEKLHKE-----IEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 355555442 33445555555555555
No 187
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.85 E-value=1.8e+02 Score=28.41 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 019366 258 QKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKH 309 (342)
Q Consensus 258 qK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~ 309 (342)
+...+.+|+...+++.+.+..+..+++.+.+.+...+.+-++.+.++..++.
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566666667777777777888888888888888888888888887764
No 188
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=24.69 E-value=3.4e+02 Score=23.49 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=31.6
Q ss_pred hhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHhhH-------HHHHHHHHHHHHhHHHHHHHHHHH
Q 019366 243 NEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLT---DDVERSN-------EMVLMLREKLEENDHELEKLKHEL 311 (342)
Q Consensus 243 lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLd---eEvE~lq-------stl~~LQqeL~~~~~~l~~lk~eL 311 (342)
+...=|.||..=+. +..++++.....+.-..+.| ..++.++ ..|...+++++.++.+-+.+...|
T Consensus 128 l~~~vi~Pl~~~~~----~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L 202 (251)
T 2fic_A 128 LVDQALLTMDTYLG----QFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDL 202 (251)
T ss_dssp HHHHTHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555444 44444444444455444444 2233332 235556667776666665544433
No 189
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.63 E-value=3.5e+02 Score=23.60 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=22.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 247 ETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 247 ria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
.|+.|+..+.......+|-+-.++=....+.+-..-|+.||.--..-|-+|.+..-++.
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~ 70 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELG 70 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555555444444444433333333333333333344444333333333333333333
No 190
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.40 E-value=1.3e+02 Score=23.33 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=13.6
Q ss_pred HHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHH
Q 019366 274 KHMDGLTDDVERSNEMVLMLREKLEENDHELE 305 (342)
Q Consensus 274 ~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~ 305 (342)
+||..|......+...+-.|+.+......+++
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433344444444444443
No 191
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.15 E-value=3.2e+02 Score=27.44 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=22.7
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 282 DVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 282 EvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
+++.+-..+..|.++|+..+.++..++.+|...-.
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666777777777777777776655433
No 192
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.95 E-value=1.2e+02 Score=20.66 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=8.8
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 019366 293 LREKLEENDHELEKLKHEL 311 (342)
Q Consensus 293 LQqeL~~~~~~l~~lk~eL 311 (342)
|-.+......+++||+.-|
T Consensus 13 Ll~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 13 ILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 3344444444555555444
No 193
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.77 E-value=88 Score=21.19 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=7.4
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 019366 293 LREKLEENDHELEKLKHE 310 (342)
Q Consensus 293 LQqeL~~~~~~l~~lk~e 310 (342)
|-.+......+++||+.-
T Consensus 12 Ll~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 12 LLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 333334444444444443
No 194
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.71 E-value=88 Score=21.31 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=9.1
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 019366 293 LREKLEENDHELEKLKHEL 311 (342)
Q Consensus 293 LQqeL~~~~~~l~~lk~eL 311 (342)
|-.+......+++||+.-|
T Consensus 13 Ll~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 13 ILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3444444445555555444
No 195
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.69 E-value=2e+02 Score=20.39 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 019366 275 HMDGLTDDVERSNEMVLMLREKLEENDHELEKL 307 (342)
Q Consensus 275 ~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~l 307 (342)
||.+|+..+..|+.....|.+.+.....+..-|
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455666666665555555555544444444333
No 196
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.63 E-value=98 Score=22.11 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcc--cchhhhHHHHHHHHH
Q 019366 225 LMAKCKTLQEENDEIGRQNEEG--ETHQLSVKLALQKSL 261 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~lseG--ria~Le~eLAlqK~~ 261 (342)
|-.-.-.|..||+-|.+...-- -|+-||.++|..++.
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4445567888888888755422 244455555544443
No 197
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.59 E-value=4.7e+02 Score=24.68 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 260 SLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 260 ~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
.....|++++.+..+-+.++...+---+-||+.||.-|.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDA 436 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHH
Confidence 4444455555555555555555555555555555544433
No 198
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=23.46 E-value=3.2e+02 Score=25.43 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=60.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 019366 245 EGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSV 316 (342)
Q Consensus 245 eGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~ 316 (342)
+-||..+++++.-....+---...+..++--|-..+.++..++..|..|+..+......+..|+.--=.++.
T Consensus 83 e~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~s~ 154 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTA 154 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBSSC
T ss_pred hhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhhhh
Confidence 557888888888888888777788888888899999999999999999999999999999988866544443
No 199
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.12 E-value=1.8e+02 Score=21.87 Aligned_cols=17 Identities=0% Similarity=-0.099 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019366 256 ALQKSLNAELKSQFEAL 272 (342)
Q Consensus 256 AlqK~~~eELrk~~~eL 272 (342)
...-.|+..|......|
T Consensus 43 ~~Ai~YI~~L~~~~~~l 59 (83)
T 1nkp_B 43 DKATEYIQYMRRKNHTH 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555554444
No 200
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.04 E-value=5.5e+02 Score=25.28 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=25.8
Q ss_pred HHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHHhccCc
Q 019366 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNE 102 (342)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~~f~~e 102 (342)
.++..+.++..--..|...-.+++..++++.....+++.-
T Consensus 28 ~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 28 FFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455555568888888888888888774
No 201
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=22.62 E-value=4.5e+02 Score=24.06 Aligned_cols=59 Identities=12% Similarity=0.241 Sum_probs=48.3
Q ss_pred CCCch-hhHHHHHHH---HHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019366 216 TANSK-MGKALMAKC---KTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYK 274 (342)
Q Consensus 216 tPqS~-~GKrLMAKC---R~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~ 274 (342)
+|.|. +|--||.=| |.++.+.++.-+.....=|.+||..+.+-++++....+.|+--++
T Consensus 67 S~~skeLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e~k 129 (222)
T 3ok8_A 67 SSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYR 129 (222)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45554 999999776 789999999899999999999999999999998877776654443
No 202
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=22.53 E-value=1.1e+02 Score=22.11 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=26.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 019366 246 GETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDV 283 (342)
Q Consensus 246 Gria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEv 283 (342)
..|..|+.+++..+..+...-..|++|-++=-.||.|+
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EI 44 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEI 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35677777777777777777777777777666666554
No 203
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=22.34 E-value=2.7e+02 Score=21.48 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 252 SVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 252 e~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
+.+++........|+..+........+|......+......|+.++..+....++|.
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~ 69 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELL 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444455555444444444444444444444444444555555555443
No 204
>3oyv_A Imelysin; outer membrane protein, extracellular active site, metal BIN protein, structural genomics; HET: MSE; 1.25A {Bacteroides ovatus atcc 8483} PDB: 3n8u_A*
Probab=22.33 E-value=5.2e+02 Score=24.78 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHH-HHhhhhhccc--chhhhHHHHHHHHHHHH-H
Q 019366 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEEND-EIGRQNEEGE--THQLSVKLALQKSLNAE-L 265 (342)
Q Consensus 190 ~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENE-ELGr~lseGr--ia~Le~eLAlqK~~~eE-L 265 (342)
.+++..+..+.++++....- +--....+.|+..|..|+.|..-.+ |||..+...+ +..=...-++...+++. .
T Consensus 162 ~~i~~a~~~a~~~i~ai~~P---f~~~i~~~~~r~a~~a~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~vl~~~ad~vi 238 (361)
T 3oyv_A 162 TKIKNAIQKAAKAIQDIPQP---FRNHIPSNETVAAMDACAELESILKNDLKSYIANNSNNINTDAVLNPVVTQYVDAVV 238 (361)
T ss_dssp HHHHHHHHHHHHHHHHSCSC---GGGCTTSHHHHHHHHHHHHHHHHHHTHHHHHHHCGGGSCCSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhcchh---HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhHHHHHHHHHHhhhh
Confidence 34555555555544444311 1112235789999999999999999 8999886542 22222334566777776 6
Q ss_pred HHHHHHHHHHHhhhhhHHHhhH
Q 019366 266 KSQFEALYKHMDGLTDDVERSN 287 (342)
Q Consensus 266 rk~~~eL~~~l~eLdeEvE~lq 287 (342)
.-.|.++..-...|...+..+-
T Consensus 239 ~P~Y~~l~~~a~~L~~a~~a~~ 260 (361)
T 3oyv_A 239 VPTYKSLKEKNDALYNAVIVLA 260 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887777777777654
No 205
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.31 E-value=1.2e+02 Score=27.54 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHH
Q 019366 268 QFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEK 306 (342)
Q Consensus 268 ~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~ 306 (342)
+++.-+-.|..|-.|+..++.++-..+++++..+.+++.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~s 52 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDS 52 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333333333333333
No 206
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.16 E-value=1.1e+02 Score=21.00 Aligned_cols=7 Identities=43% Similarity=0.653 Sum_probs=2.7
Q ss_pred hhhHHHh
Q 019366 279 LTDDVER 285 (342)
Q Consensus 279 LdeEvE~ 285 (342)
|+..||.
T Consensus 6 LE~kVEe 12 (36)
T 1kd8_A 6 LEAEVEE 12 (36)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 207
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.04 E-value=1.4e+02 Score=20.23 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=8.5
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 019366 293 LREKLEENDHELEKLKHEL 311 (342)
Q Consensus 293 LQqeL~~~~~~l~~lk~eL 311 (342)
|-++-.....+++||+.-|
T Consensus 12 Ll~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 12 IXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3333444444445555444
No 208
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.95 E-value=1.3e+02 Score=20.47 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=9.2
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 019366 293 LREKLEENDHELEKLKHEL 311 (342)
Q Consensus 293 LQqeL~~~~~~l~~lk~eL 311 (342)
|-++-.....++++|+.-|
T Consensus 13 Ll~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 13 LLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 4444444455555555444
No 209
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.66 E-value=3.3e+02 Score=22.15 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 019366 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEEN 209 (342)
Q Consensus 130 LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~e 209 (342)
|+..|.+-+.+=...-......++|+.+|-++|=+ -| |.+...=|.+-...+.++++++.+
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe------------------EA-N~MVa~ar~e~~~~e~kn~~L~~q 91 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------------------EA-NNMVADARKEKYAIEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444444344456677778888888776633 11 222222255666677777777776
Q ss_pred hh
Q 019366 210 IA 211 (342)
Q Consensus 210 L~ 211 (342)
|.
T Consensus 92 L~ 93 (97)
T 2eqb_B 92 LR 93 (97)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 210
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.47 E-value=99 Score=29.58 Aligned_cols=27 Identities=7% Similarity=0.305 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 019366 289 MVLMLREKLEENDHELEKLKHELRQKS 315 (342)
Q Consensus 289 tl~~LQqeL~~~~~~l~~lk~eL~~~~ 315 (342)
.|..||.++...+.+|.+|+..+.+..
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~q~ 55 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKTQK 55 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777788888888877775543
No 211
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=21.30 E-value=3.5e+02 Score=22.40 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019366 220 KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEE 299 (342)
Q Consensus 220 ~~GKrLMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~ 299 (342)
+..+++.+-.|.||+-++-|-. +.++..|=++-|.++...++.+-+.+|.+..++..
T Consensus 45 ~NS~aiaanTr~lQqh~aRlns-----------------------qQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar 101 (114)
T 2xzr_A 45 KNSKAIAANTRTLQQHSARLDS-----------------------QQRQINENHKEMKQIEDKIEEILSKIYHIENEIAR 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHhHHHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4567888888888876554432 22334444555667778888888899988888777
Q ss_pred hHHHH
Q 019366 300 NDHEL 304 (342)
Q Consensus 300 ~~~~l 304 (342)
.+.-+
T Consensus 102 ~kkl~ 106 (114)
T 2xzr_A 102 IKKLI 106 (114)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 212
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.13 E-value=81 Score=23.31 Aligned_cols=20 Identities=30% Similarity=0.180 Sum_probs=8.1
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q 019366 248 THQLSVKLALQKSLNAELKS 267 (342)
Q Consensus 248 ia~Le~eLAlqK~~~eELrk 267 (342)
+..|+.++..++..|..|+.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 213
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.12 E-value=2.6e+02 Score=28.19 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=44.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh--C----------hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019366 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL--D----------PAIHEEFRRLKNLVEEKDKKVKELEENI 210 (342)
Q Consensus 144 ll~rLA~KEQEiqel~s~l~dlk~~~~pss~qlR~~Ll--D----------PAVNlef~rLR~eLee~~~klk~aq~eL 210 (342)
.+-.+..+..+-.++...+..|++..+.-+.+...+.- + .++-.+...|+.+|.+.+.++.+++++|
T Consensus 68 ~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 68 DLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888887775544433322211 1 1344556667778888888888777777
No 214
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.07 E-value=1.7e+02 Score=28.09 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 019366 228 KCKTLQEENDEI 239 (342)
Q Consensus 228 KCR~LqeENEEL 239 (342)
||+.|.+|...|
T Consensus 6 ~~~~~~~~~~~~ 17 (323)
T 1lwu_C 6 TVQKILEEVRIL 17 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555544333
No 215
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.05 E-value=2.5e+02 Score=22.48 Aligned_cols=7 Identities=43% Similarity=0.510 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 019366 228 KCKTLQE 234 (342)
Q Consensus 228 KCR~Lqe 234 (342)
||+.|+.
T Consensus 16 RkkkL~~ 22 (98)
T 2ke4_A 16 QRKRLQQ 22 (98)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 216
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.04 E-value=2.5e+02 Score=20.59 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=15.4
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 019366 283 VERSNEMVLMLREKLEENDHELEKLKHELRQK 314 (342)
Q Consensus 283 vE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~ 314 (342)
++.++..+..--..|..++.++..|...++.+
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L 68 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555444443
No 217
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=20.95 E-value=1.3e+02 Score=23.99 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHHHhhhHhhHHHHHHHHHHHHhH----HHHHHHHHHhHHHHHHHHHHHHH
Q 019366 117 INYLQTLKSSEEMLKEQLEKAKKK----EAAFIVTFAKREQEIAELKSAVR 163 (342)
Q Consensus 117 ~~~l~~lk~sE~~LkeQl~eakrR----Envll~rLA~KEQEiqel~s~l~ 163 (342)
.|.|..|+..-+.|..++.+...+ -.-+...|+.+|.++++++..+.
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666676666554 13455667777777777766553
No 218
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=20.84 E-value=3.9e+02 Score=22.66 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhhhhHHHhh
Q 019366 267 SQFEALYKHMDGLTDDVERS 286 (342)
Q Consensus 267 k~~~eL~~~l~eLdeEvE~l 286 (342)
..+..-...|..+....+.|
T Consensus 152 ~el~~~~~~v~~l~~~~~~L 171 (210)
T 3pdy_A 152 RELELKEKKIKELQNAGDRL 171 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 33444444444554444443
No 219
>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=20.42 E-value=1.8e+02 Score=21.90 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=29.4
Q ss_pred hhHHHhhHHhhhhchhhhHhhHHHHHHHHHHHHHHHH
Q 019366 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHS 97 (342)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e~~kW~~ 97 (342)
..-|++|++|++.--..+-.++..+..---.+++-+.
T Consensus 16 A~~I~~LK~Si~~TNeAV~el~~g~~~lavAv~~iQd 52 (63)
T 2fyz_A 16 ARAIAAMKNSIQATNRAVFEVKEGTQRLAIAVQAIQD 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999888888777766666666555
No 220
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.27 E-value=2.9e+02 Score=26.90 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 019366 225 LMAKCKTLQEENDEIGRQNE 244 (342)
Q Consensus 225 LMAKCR~LqeENEELGr~ls 244 (342)
+..+...|+.+-..+++.+.
T Consensus 40 ~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555554
No 221
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=20.20 E-value=2.6e+02 Score=20.48 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhHH
Q 019366 287 NEMVLMLREKLEENDH 302 (342)
Q Consensus 287 qstl~~LQqeL~~~~~ 302 (342)
+.+|..|.+++.+.+.
T Consensus 47 ~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 47 RERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666667766665543
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.18 E-value=1.2e+02 Score=29.67 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 019366 268 QFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLK 308 (342)
Q Consensus 268 ~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk 308 (342)
.++.|.+.++-|..+.+.+...+..++.++...+.++.+++
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344444444444444444444555555555555554443
No 223
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.16 E-value=3e+02 Score=21.15 Aligned_cols=15 Identities=7% Similarity=0.104 Sum_probs=5.7
Q ss_pred HHhHHHHHHHHHHHH
Q 019366 148 FAKREQEIAELKSAV 162 (342)
Q Consensus 148 LA~KEQEiqel~s~l 162 (342)
|....++++.+..++
T Consensus 15 ~~~l~~~~~~l~~q~ 29 (117)
T 2zqm_A 15 LESYQQQLQLVVQQK 29 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 224
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.13 E-value=1.7e+02 Score=26.96 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 019366 233 QEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERS 286 (342)
Q Consensus 233 qeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~l 286 (342)
.+||+.|-. +|-.|+-+++..|+.+.+ +++|..+++-|-+=+++|
T Consensus 114 LeEN~~Lh~-----~ie~l~eEi~~LkeEn~e----LkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 114 LKENEKLHK-----EIEQKDNEIARLKKENKE----LAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
No 225
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=20.06 E-value=1.6e+02 Score=22.76 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=25.9
Q ss_pred HHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 019366 203 VKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEG 246 (342)
Q Consensus 203 lk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseG 246 (342)
+.++|..+..|.|.+.++. .++. .|.+|-.||...+..+
T Consensus 3 l~elQ~~v~~~~~~~~~~~--~~~~---kL~eE~gEl~e~~~~~ 41 (100)
T 2q73_A 3 LSELQSHIKEFDYAPEQSE--HYFF---KLIEEVGELSESIRKG 41 (100)
T ss_dssp HHHHHHHHHHHCCCGGGHH--HHHH---HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCChH--HHHH---HHHHHHHHHHHHHHhh
Confidence 4566777777777776443 3333 6889999998876543
Done!