Query 019368
Match_columns 342
No_of_seqs 153 out of 1497
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 5E-68 1.1E-72 492.1 34.4 305 5-314 1-311 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.3E-66 2.9E-71 473.5 32.4 317 3-322 10-335 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 1.7E-61 3.8E-66 451.3 32.6 298 7-310 1-316 (317)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 1.4E-60 3E-65 449.8 32.6 306 3-313 11-334 (346)
5 PRK10625 tas putative aldo-ket 100.0 2.6E-60 5.7E-65 448.5 33.4 303 5-312 1-339 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 1.8E-60 3.9E-65 425.9 26.2 259 4-315 2-267 (280)
7 PLN02587 L-galactose dehydroge 100.0 2.4E-58 5.3E-63 429.7 31.4 286 7-312 1-300 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 4.3E-57 9.3E-62 416.1 32.0 281 7-310 1-285 (285)
9 PRK10376 putative oxidoreducta 100.0 9.3E-57 2E-61 414.3 31.5 280 1-313 1-289 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.3E-56 9.4E-61 409.0 25.1 277 19-311 1-282 (283)
11 KOG1577 Aldo/keto reductase fa 100.0 1.5E-55 3.3E-60 394.1 25.2 264 1-315 1-288 (300)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.3E-54 2.9E-59 395.4 28.7 245 16-313 2-253 (267)
13 PRK14863 bifunctional regulato 100.0 2.9E-54 6.3E-59 397.2 24.3 279 14-321 2-290 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 5.1E-53 1.1E-57 386.3 28.0 260 1-315 1-265 (275)
15 COG4989 Predicted oxidoreducta 100.0 2.1E-53 4.7E-58 364.7 23.1 283 5-313 1-294 (298)
16 KOG1576 Predicted oxidoreducta 100.0 5E-50 1.1E-54 346.3 24.7 310 4-335 21-339 (342)
17 COG1453 Predicted oxidoreducta 100.0 3.5E-50 7.7E-55 363.0 23.9 272 5-312 1-285 (391)
18 KOG3023 Glutamate-cysteine lig 97.9 3.6E-05 7.7E-10 67.0 6.6 71 135-206 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 93.1 4.4 9.6E-05 37.7 14.9 153 36-210 134-290 (316)
20 PRK08392 hypothetical protein; 91.1 8.4 0.00018 33.7 13.5 150 38-204 14-179 (215)
21 cd03316 MR_like Mandelate race 84.7 36 0.00078 32.1 14.7 151 37-206 140-298 (357)
22 PF05913 DUF871: Bacterial pro 84.5 2.8 6.2E-05 39.8 6.6 211 36-294 12-235 (357)
23 PRK10550 tRNA-dihydrouridine s 83.3 16 0.00034 34.1 10.9 136 36-182 73-227 (312)
24 PRK07945 hypothetical protein; 81.7 38 0.00081 31.9 12.9 153 37-203 110-288 (335)
25 PF07021 MetW: Methionine bios 80.1 13 0.00028 32.1 8.3 102 109-212 64-172 (193)
26 cd03174 DRE_TIM_metallolyase D 77.3 17 0.00036 32.6 8.9 106 99-206 15-135 (265)
27 PRK08609 hypothetical protein; 76.3 91 0.002 31.7 14.6 149 40-203 351-522 (570)
28 COG1748 LYS9 Saccharopine dehy 76.2 14 0.0003 35.6 8.1 81 38-132 79-159 (389)
29 PRK13958 N-(5'-phosphoribosyl) 75.6 8 0.00017 33.7 6.0 68 112-181 16-84 (207)
30 COG1801 Uncharacterized conser 74.9 53 0.0012 29.8 11.3 112 19-133 4-116 (263)
31 cd04740 DHOD_1B_like Dihydroor 73.3 75 0.0016 29.1 13.4 151 36-200 100-286 (296)
32 PRK10558 alpha-dehydro-beta-de 71.8 46 0.001 30.0 10.1 68 141-209 9-79 (256)
33 cd06543 GH18_PF-ChiA-like PF-C 69.8 93 0.002 28.7 12.6 181 20-211 72-265 (294)
34 PRK13796 GTPase YqeH; Provisio 68.5 1.1E+02 0.0024 29.1 13.0 122 35-166 54-178 (365)
35 PF01904 DUF72: Protein of unk 67.6 74 0.0016 28.1 10.4 128 52-204 19-147 (230)
36 cd00308 enolase_like Enolase-s 67.5 29 0.00063 30.5 7.8 87 121-211 120-208 (229)
37 TIGR02370 pyl_corrinoid methyl 67.5 52 0.0011 28.3 9.2 146 36-201 10-165 (197)
38 cd03322 rpsA The starvation se 67.1 30 0.00064 32.9 8.3 71 138-208 202-274 (361)
39 PRK01222 N-(5'-phosphoribosyl) 67.0 14 0.00031 32.2 5.7 68 112-181 18-86 (210)
40 COG1140 NarY Nitrate reductase 66.7 3.4 7.3E-05 39.0 1.7 54 148-201 263-317 (513)
41 PRK00164 moaA molybdenum cofac 66.3 1.1E+02 0.0025 28.4 13.1 151 35-204 49-228 (331)
42 PF00682 HMGL-like: HMGL-like 65.2 63 0.0014 28.4 9.6 161 35-209 11-193 (237)
43 cd03315 MLE_like Muconate lact 64.7 1.1E+02 0.0023 27.5 16.5 157 36-211 85-243 (265)
44 COG0135 TrpF Phosphoribosylant 64.7 38 0.00082 29.6 7.7 83 113-204 18-103 (208)
45 PRK07535 methyltetrahydrofolat 64.6 1.1E+02 0.0024 27.7 11.6 101 101-206 23-123 (261)
46 cd02070 corrinoid_protein_B12- 64.3 89 0.0019 26.9 10.1 145 36-200 9-162 (201)
47 PRK10128 2-keto-3-deoxy-L-rham 63.1 1E+02 0.0022 28.1 10.5 65 142-207 9-76 (267)
48 PRK15072 bifunctional D-altron 63.0 58 0.0012 31.5 9.5 83 122-208 233-317 (404)
49 COG2102 Predicted ATPases of P 62.9 17 0.00036 32.0 5.1 124 109-262 51-177 (223)
50 cd00739 DHPS DHPS subgroup of 61.9 1.2E+02 0.0027 27.3 12.2 100 100-205 21-126 (257)
51 cd00423 Pterin_binding Pterin 61.9 1.2E+02 0.0026 27.2 12.6 102 100-207 21-128 (258)
52 PRK05692 hydroxymethylglutaryl 61.5 1.3E+02 0.0029 27.6 11.7 105 98-205 21-139 (287)
53 TIGR03239 GarL 2-dehydro-3-deo 61.3 89 0.0019 28.1 9.8 66 142-208 3-71 (249)
54 COG0635 HemN Coproporphyrinoge 60.0 65 0.0014 31.4 9.3 61 99-161 200-276 (416)
55 COG2069 CdhD CO dehydrogenase/ 59.7 1.3E+02 0.0029 27.7 10.3 95 111-210 158-262 (403)
56 COG2861 Uncharacterized protei 59.2 40 0.00087 30.1 6.8 28 135-163 105-132 (250)
57 PRK14457 ribosomal RNA large s 58.8 1.7E+02 0.0036 27.8 14.1 92 78-170 99-202 (345)
58 TIGR02026 BchE magnesium-proto 58.7 95 0.0021 30.9 10.4 73 126-200 313-392 (497)
59 cd03325 D-galactonate_dehydrat 58.0 68 0.0015 30.3 8.9 81 122-206 203-285 (352)
60 TIGR01502 B_methylAsp_ase meth 57.8 77 0.0017 30.8 9.3 86 122-208 265-357 (408)
61 COG2355 Zn-dependent dipeptida 57.5 66 0.0014 30.0 8.3 106 39-158 150-260 (313)
62 PRK14017 galactonate dehydrata 56.8 68 0.0015 30.7 8.8 82 122-207 204-287 (382)
63 PRK00730 rnpA ribonuclease P; 56.4 65 0.0014 26.2 7.2 63 78-148 46-110 (138)
64 TIGR00735 hisF imidazoleglycer 56.0 1E+02 0.0022 27.6 9.3 91 109-202 160-253 (254)
65 PRK06361 hypothetical protein; 54.8 1.4E+02 0.003 25.7 18.6 185 38-269 10-201 (212)
66 cd03323 D-glucarate_dehydratas 54.6 2.1E+02 0.0045 27.6 14.9 150 36-208 168-321 (395)
67 COG2089 SpsE Sialic acid synth 54.2 1.9E+02 0.0042 27.1 11.3 117 36-169 88-224 (347)
68 PF13378 MR_MLE_C: Enolase C-t 54.1 21 0.00046 27.3 4.0 54 157-211 3-57 (111)
69 cd03318 MLE Muconate Lactonizi 54.1 49 0.0011 31.4 7.3 73 138-210 227-301 (365)
70 COG0218 Predicted GTPase [Gene 53.7 1.5E+02 0.0032 25.7 10.0 100 38-148 91-198 (200)
71 PRK09058 coproporphyrinogen II 53.7 91 0.002 30.6 9.3 29 99-128 226-254 (449)
72 TIGR02534 mucon_cyclo muconate 53.1 45 0.00097 31.7 6.9 74 138-211 226-301 (368)
73 PRK13803 bifunctional phosphor 52.8 71 0.0015 32.8 8.6 69 113-181 19-88 (610)
74 PLN00191 enolase 52.8 2.4E+02 0.0052 27.9 15.2 97 100-205 295-394 (457)
75 cd03327 MR_like_2 Mandelate ra 52.0 63 0.0014 30.4 7.6 81 122-206 198-280 (341)
76 COG1151 6Fe-6S prismane cluste 51.5 80 0.0017 31.8 8.2 94 103-201 360-462 (576)
77 PRK09613 thiH thiamine biosynt 51.4 1.5E+02 0.0032 29.5 10.2 109 98-208 113-241 (469)
78 PF07994 NAD_binding_5: Myo-in 51.2 85 0.0018 29.0 8.0 145 102-288 131-283 (295)
79 PRK12581 oxaloacetate decarbox 51.1 2.6E+02 0.0056 27.7 13.4 111 36-160 103-215 (468)
80 PRK09856 fructoselysine 3-epim 50.7 1.8E+02 0.004 25.9 11.7 51 189-259 93-143 (275)
81 TIGR00190 thiC thiamine biosyn 50.5 2.4E+02 0.0053 27.2 11.4 153 36-214 75-231 (423)
82 cd07943 DRE_TIM_HOA 4-hydroxy- 50.4 1.9E+02 0.0041 26.0 16.0 145 35-198 19-182 (263)
83 PRK04452 acetyl-CoA decarbonyl 50.1 2.2E+02 0.0048 26.7 11.9 95 111-208 83-184 (319)
84 cd03321 mandelate_racemase Man 49.9 2.3E+02 0.0049 26.7 12.7 149 38-204 143-293 (355)
85 PRK02901 O-succinylbenzoate sy 49.7 1.1E+02 0.0024 28.7 8.8 71 139-211 173-244 (327)
86 cd03314 MAL Methylaspartate am 49.5 1.7E+02 0.0037 28.0 10.1 84 124-207 230-320 (369)
87 PRK07259 dihydroorotate dehydr 48.2 2.2E+02 0.0048 26.1 11.7 153 36-200 102-289 (301)
88 PRK07379 coproporphyrinogen II 47.7 1.2E+02 0.0025 29.4 8.8 61 99-161 178-255 (400)
89 PRK06424 transcription factor; 47.4 86 0.0019 25.6 6.7 80 188-270 22-109 (144)
90 cd00740 MeTr MeTr subgroup of 47.0 2.2E+02 0.0047 25.6 10.0 104 100-207 23-127 (252)
91 PRK06294 coproporphyrinogen II 47.0 1.4E+02 0.003 28.5 9.1 61 99-161 166-243 (370)
92 TIGR00126 deoC deoxyribose-pho 46.9 1.1E+02 0.0024 26.7 7.8 72 36-120 130-205 (211)
93 PRK12928 lipoyl synthase; Prov 46.1 2.2E+02 0.0047 26.2 9.9 77 133-210 185-282 (290)
94 PLN02389 biotin synthase 45.8 2.8E+02 0.0061 26.6 11.6 102 35-150 116-227 (379)
95 PRK09061 D-glutamate deacylase 45.8 1.9E+02 0.004 29.0 10.2 114 40-159 171-285 (509)
96 COG4130 Predicted sugar epimer 45.7 1.3E+02 0.0028 26.6 7.6 81 159-259 49-136 (272)
97 PRK06740 histidinol-phosphatas 45.5 2.6E+02 0.0056 26.3 10.5 48 107-155 156-220 (331)
98 TIGR00381 cdhD CO dehydrogenas 45.1 2.9E+02 0.0063 26.6 11.3 105 102-211 127-252 (389)
99 smart00642 Aamy Alpha-amylase 45.0 38 0.00082 28.3 4.4 22 189-210 73-94 (166)
100 cd02810 DHOD_DHPD_FMN Dihydroo 44.9 2.4E+02 0.0052 25.5 12.3 130 36-178 109-271 (289)
101 PF00682 HMGL-like: HMGL-like 44.8 2.1E+02 0.0046 25.0 11.0 98 99-202 10-124 (237)
102 PF05690 ThiG: Thiazole biosyn 44.7 1.3E+02 0.0028 26.9 7.7 111 18-150 9-124 (247)
103 PRK10415 tRNA-dihydrouridine s 44.5 2.7E+02 0.0058 26.0 11.9 137 36-182 75-227 (321)
104 PLN02746 hydroxymethylglutaryl 44.5 2.8E+02 0.0062 26.3 10.8 102 98-205 63-181 (347)
105 COG3589 Uncharacterized conser 44.2 2.8E+02 0.0061 26.2 12.5 156 36-210 14-181 (360)
106 cd04731 HisF The cyclase subun 43.8 2.3E+02 0.0049 25.0 11.7 144 36-197 82-242 (243)
107 TIGR02311 HpaI 2,4-dihydroxyhe 43.6 2.4E+02 0.0052 25.2 10.0 64 142-207 3-70 (249)
108 KOG0259 Tyrosine aminotransfer 43.5 3.1E+02 0.0068 26.5 12.3 65 16-88 62-135 (447)
109 PRK05660 HemN family oxidoredu 43.4 1.6E+02 0.0035 28.1 9.0 61 99-161 170-243 (378)
110 PLN02363 phosphoribosylanthran 43.3 73 0.0016 28.8 6.2 68 113-181 63-131 (256)
111 cd07948 DRE_TIM_HCS Saccharomy 43.0 2.5E+02 0.0055 25.3 11.0 113 36-167 20-146 (262)
112 PF11242 DUF2774: Protein of u 43.0 35 0.00076 23.4 3.1 22 249-270 15-36 (63)
113 TIGR00676 fadh2 5,10-methylene 42.7 2.6E+02 0.0056 25.3 15.5 147 38-202 15-186 (272)
114 PRK09427 bifunctional indole-3 42.6 60 0.0013 32.0 6.0 65 113-181 273-338 (454)
115 cd07943 DRE_TIM_HOA 4-hydroxy- 42.5 1.8E+02 0.0038 26.2 8.7 105 99-205 18-131 (263)
116 PRK13352 thiamine biosynthesis 42.5 3.3E+02 0.0072 26.5 11.5 155 36-214 75-234 (431)
117 COG3653 N-acyl-D-aspartate/D-g 41.9 3.5E+02 0.0076 26.6 14.7 82 40-131 184-279 (579)
118 COG1751 Uncharacterized conser 41.1 97 0.0021 25.7 5.9 73 36-118 12-84 (186)
119 cd01973 Nitrogenase_VFe_beta_l 40.8 3.7E+02 0.0079 26.5 13.4 111 57-178 64-194 (454)
120 PRK02083 imidazole glycerol ph 40.4 2.7E+02 0.0058 24.8 10.0 89 111-202 160-251 (253)
121 PF14871 GHL6: Hypothetical gl 40.4 59 0.0013 26.1 4.7 25 185-209 43-67 (132)
122 cd01301 rDP_like renal dipepti 40.3 1.6E+02 0.0035 27.3 8.2 107 38-158 154-263 (309)
123 PRK05588 histidinol-phosphatas 40.1 1.4E+02 0.003 26.7 7.6 104 38-155 16-143 (255)
124 COG2949 SanA Uncharacterized m 39.4 2.5E+02 0.0055 24.6 8.4 99 103-207 76-181 (235)
125 PLN02428 lipoic acid synthase 39.3 3.4E+02 0.0075 25.8 12.3 157 36-210 131-325 (349)
126 cd00405 PRAI Phosphoribosylant 39.3 1.5E+02 0.0033 25.3 7.5 46 111-163 67-112 (203)
127 TIGR01928 menC_lowGC/arch o-su 39.0 3.2E+02 0.007 25.4 15.9 153 36-211 132-286 (324)
128 COG1121 ZnuC ABC-type Mn/Zn tr 39.0 1.5E+02 0.0033 26.8 7.5 66 101-169 113-207 (254)
129 cd02930 DCR_FMN 2,4-dienoyl-Co 38.9 3.4E+02 0.0074 25.6 14.0 97 79-178 202-305 (353)
130 cd02801 DUS_like_FMN Dihydrour 38.7 2.4E+02 0.0052 24.4 8.9 132 36-179 65-213 (231)
131 TIGR01228 hutU urocanate hydra 38.6 1.1E+02 0.0023 30.4 6.8 123 44-180 109-258 (545)
132 CHL00162 thiG thiamin biosynth 38.5 3E+02 0.0066 24.9 15.1 123 1-150 1-138 (267)
133 PRK05414 urocanate hydratase; 38.4 1.1E+02 0.0024 30.5 6.8 113 44-170 118-254 (556)
134 PF03102 NeuB: NeuB family; I 38.2 1.7E+02 0.0036 26.2 7.6 108 35-161 53-182 (241)
135 TIGR00737 nifR3_yhdG putative 38.1 3.3E+02 0.0072 25.2 12.1 138 36-183 73-226 (319)
136 PRK09240 thiH thiamine biosynt 37.8 3.7E+02 0.0079 25.6 12.1 101 35-150 104-216 (371)
137 TIGR03247 glucar-dehydr glucar 37.8 1.9E+02 0.0041 28.4 8.6 86 123-208 252-338 (441)
138 TIGR01927 menC_gamma/gm+ o-suc 37.7 1.8E+02 0.004 26.9 8.2 73 140-212 196-270 (307)
139 PF10668 Phage_terminase: Phag 37.6 58 0.0013 22.4 3.5 17 249-265 24-40 (60)
140 cd07944 DRE_TIM_HOA_like 4-hyd 37.5 3E+02 0.0066 24.8 9.4 103 103-205 19-128 (266)
141 cd00945 Aldolase_Class_I Class 37.1 2.4E+02 0.0053 23.4 9.0 95 36-148 11-109 (201)
142 COG1168 MalY Bifunctional PLP- 36.9 3.9E+02 0.0084 25.7 11.2 126 37-204 40-196 (388)
143 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.6 3.3E+02 0.0071 24.7 16.8 125 35-169 18-156 (275)
144 PRK08446 coproporphyrinogen II 36.5 3.7E+02 0.008 25.3 10.5 61 99-161 161-231 (350)
145 COG3623 SgaU Putative L-xylulo 36.5 46 0.00099 29.6 3.6 77 12-89 65-156 (287)
146 TIGR02026 BchE magnesium-proto 36.2 3.7E+02 0.0081 26.7 10.6 106 99-208 221-345 (497)
147 TIGR03822 AblA_like_2 lysine-2 36.1 3.6E+02 0.0079 25.1 12.6 91 122-212 138-240 (321)
148 TIGR03822 AblA_like_2 lysine-2 36.0 3.6E+02 0.0079 25.1 12.5 102 36-150 120-228 (321)
149 COG4555 NatA ABC-type Na+ tran 35.7 1.8E+02 0.0039 25.6 7.0 70 99-170 104-202 (245)
150 COG0502 BioB Biotin synthase a 35.6 3.5E+02 0.0076 25.5 9.5 132 36-185 85-233 (335)
151 cd01075 NAD_bind_Leu_Phe_Val_D 35.5 1E+02 0.0022 26.6 5.7 73 190-271 123-196 (200)
152 COG2256 MGS1 ATPase related to 34.2 2.2E+02 0.0047 27.7 7.9 103 42-161 37-143 (436)
153 PRK13347 coproporphyrinogen II 33.7 1.9E+02 0.0041 28.4 8.0 112 42-162 153-292 (453)
154 COG0042 tRNA-dihydrouridine sy 33.7 3E+02 0.0066 25.7 9.0 133 36-179 77-228 (323)
155 TIGR00035 asp_race aspartate r 33.7 2.5E+02 0.0054 24.6 8.1 62 101-163 15-88 (229)
156 PRK14461 ribosomal RNA large s 33.5 2E+02 0.0044 27.5 7.7 85 124-209 232-351 (371)
157 PRK07094 biotin synthase; Prov 33.3 2.4E+02 0.0051 26.1 8.3 97 36-150 71-179 (323)
158 PRK09856 fructoselysine 3-epim 33.3 3.3E+02 0.0071 24.3 9.0 58 154-211 3-72 (275)
159 PF11372 DUF3173: Domain of un 33.3 40 0.00087 23.1 2.2 33 36-71 15-56 (59)
160 cd01974 Nitrogenase_MoFe_beta 33.2 4.7E+02 0.01 25.5 12.1 110 57-177 63-192 (435)
161 KOG1908 Ribonuclease inhibitor 33.1 1.9E+02 0.004 23.2 6.2 81 241-333 75-155 (165)
162 KOG0059 Lipid exporter ABCA1 a 33.0 2.1E+02 0.0045 30.9 8.7 72 99-172 669-769 (885)
163 PRK09249 coproporphyrinogen II 33.0 1.2E+02 0.0026 29.7 6.5 15 200-214 317-331 (453)
164 TIGR02660 nifV_homocitr homoci 32.7 4.4E+02 0.0095 25.0 13.2 98 98-203 18-130 (365)
165 cd01297 D-aminoacylase D-amino 32.7 4.6E+02 0.0099 25.2 11.4 102 39-150 168-275 (415)
166 PF00809 Pterin_bind: Pterin b 32.7 3.3E+02 0.0071 23.6 9.7 89 114-208 29-125 (210)
167 TIGR03471 HpnJ hopanoid biosyn 32.6 3.4E+02 0.0074 26.7 9.7 90 110-201 290-393 (472)
168 TIGR00742 yjbN tRNA dihydrouri 32.0 4.3E+02 0.0092 24.7 11.6 133 36-178 65-222 (318)
169 PRK00507 deoxyribose-phosphate 31.6 2.2E+02 0.0048 25.0 7.3 75 36-120 134-209 (221)
170 TIGR01496 DHPS dihydropteroate 31.4 3.9E+02 0.0085 24.0 10.0 98 100-205 20-124 (257)
171 cd03329 MR_like_4 Mandelate ra 31.3 4.6E+02 0.0099 24.8 15.0 152 36-206 143-299 (368)
172 PTZ00081 enolase; Provisional 31.1 4.8E+02 0.01 25.7 10.1 96 100-204 281-381 (439)
173 PRK05628 coproporphyrinogen II 30.8 3.2E+02 0.007 25.9 8.9 27 100-127 172-198 (375)
174 TIGR02351 thiH thiazole biosyn 30.8 4.6E+02 0.01 24.9 9.9 102 35-150 103-215 (366)
175 PF13407 Peripla_BP_4: Peripla 30.7 2.1E+02 0.0046 24.8 7.3 51 102-158 13-63 (257)
176 PRK08599 coproporphyrinogen II 30.7 3E+02 0.0066 26.1 8.7 61 99-161 163-240 (377)
177 PF01118 Semialdhyde_dh: Semia 30.6 69 0.0015 24.9 3.6 28 36-63 75-102 (121)
178 PRK00077 eno enolase; Provisio 30.5 4.8E+02 0.01 25.4 10.1 96 100-204 261-361 (425)
179 TIGR02090 LEU1_arch isopropylm 30.4 4.8E+02 0.01 24.8 9.9 25 35-59 19-43 (363)
180 smart00052 EAL Putative diguan 30.3 2.9E+02 0.0063 23.6 8.0 99 103-205 99-209 (241)
181 COG1679 Predicted aconitase [G 30.2 5E+02 0.011 24.9 9.9 101 42-149 208-316 (403)
182 COG0820 Predicted Fe-S-cluster 29.6 3E+02 0.0064 26.2 8.0 107 78-184 99-222 (349)
183 TIGR00048 radical SAM enzyme, 29.6 2E+02 0.0043 27.3 7.1 87 123-209 218-332 (355)
184 PF11020 DUF2610: Domain of un 29.5 1.3E+02 0.0029 21.8 4.4 30 241-271 48-77 (82)
185 PRK08195 4-hyroxy-2-oxovalerat 29.5 4.8E+02 0.01 24.5 17.3 24 35-58 22-45 (337)
186 TIGR03070 couple_hipB transcri 29.5 67 0.0014 20.7 2.9 20 249-268 6-25 (58)
187 PF02679 ComA: (2R)-phospho-3- 29.4 61 0.0013 29.1 3.4 97 107-204 25-131 (244)
188 TIGR03849 arch_ComA phosphosul 29.3 1.7E+02 0.0038 26.1 6.2 96 107-204 12-118 (237)
189 cd07939 DRE_TIM_NifV Streptomy 29.3 4.1E+02 0.009 23.7 12.7 146 106-300 22-182 (259)
190 PF14502 HTH_41: Helix-turn-he 28.9 56 0.0012 21.3 2.2 29 248-276 7-37 (48)
191 cd03320 OSBS o-Succinylbenzoat 28.9 2.3E+02 0.0049 25.4 7.1 85 121-210 153-238 (263)
192 PF00356 LacI: Bacterial regul 28.8 68 0.0015 20.6 2.6 42 250-297 2-43 (46)
193 cd03317 NAAAR N-acylamino acid 28.8 4.9E+02 0.011 24.4 15.5 148 38-209 139-289 (354)
194 COG0731 Fe-S oxidoreductases [ 28.6 2.1E+02 0.0046 26.4 6.8 54 126-179 148-210 (296)
195 PF01402 RHH_1: Ribbon-helix-h 28.6 1.4E+02 0.0029 17.8 4.2 22 245-266 9-30 (39)
196 TIGR00538 hemN oxygen-independ 28.5 1.9E+02 0.0041 28.4 7.0 26 100-126 215-240 (455)
197 PRK15440 L-rhamnonate dehydrat 28.4 2.7E+02 0.0058 26.9 7.9 68 138-205 247-318 (394)
198 cd03174 DRE_TIM_metallolyase D 28.3 4.1E+02 0.009 23.4 14.5 117 36-169 17-153 (265)
199 cd01320 ADA Adenosine deaminas 28.3 3.2E+02 0.0069 25.2 8.2 105 100-205 66-192 (325)
200 COG0159 TrpA Tryptophan syntha 28.2 4.6E+02 0.01 23.9 8.7 94 103-200 2-123 (265)
201 cd02069 methionine_synthase_B1 27.8 4.1E+02 0.0089 23.1 9.6 145 36-200 13-168 (213)
202 PRK09413 IS2 repressor TnpA; R 27.8 56 0.0012 25.6 2.6 40 36-77 14-53 (121)
203 CHL00076 chlB photochlorophyll 27.7 6.3E+02 0.014 25.3 11.7 89 121-209 117-248 (513)
204 PRK14040 oxaloacetate decarbox 27.7 6.9E+02 0.015 25.7 18.3 110 34-152 23-140 (593)
205 PRK05799 coproporphyrinogen II 27.5 4E+02 0.0087 25.2 8.9 28 99-127 162-189 (374)
206 PF13552 DUF4127: Protein of u 27.5 6.1E+02 0.013 25.4 10.3 129 37-168 211-367 (497)
207 TIGR03217 4OH_2_O_val_ald 4-hy 27.5 5.2E+02 0.011 24.3 17.3 48 35-82 21-79 (333)
208 PF01207 Dus: Dihydrouridine s 27.2 1.7E+02 0.0037 27.1 6.1 133 36-178 64-212 (309)
209 PF09639 YjcQ: YjcQ protein; 27.0 80 0.0017 23.3 3.2 24 136-159 25-48 (88)
210 COG2987 HutU Urocanate hydrata 27.0 1.5E+02 0.0034 29.0 5.7 102 65-176 149-261 (561)
211 PRK08195 4-hyroxy-2-oxovalerat 26.9 5.4E+02 0.012 24.2 10.2 103 98-205 20-134 (337)
212 COG4464 CapC Capsular polysacc 26.5 4.6E+02 0.0099 23.3 8.1 39 36-74 18-59 (254)
213 cd00248 Mth938-like Mth938-lik 26.2 1.7E+02 0.0037 22.5 5.0 52 156-207 36-87 (109)
214 PLN02681 proline dehydrogenase 26.1 6.5E+02 0.014 24.9 11.9 161 40-210 222-413 (455)
215 TIGR00126 deoC deoxyribose-pho 25.9 4.5E+02 0.0097 22.9 10.3 100 35-148 15-114 (211)
216 cd01965 Nitrogenase_MoFe_beta_ 25.9 6.1E+02 0.013 24.5 12.6 109 59-178 61-188 (428)
217 PRK05283 deoxyribose-phosphate 25.7 5E+02 0.011 23.5 9.3 78 36-122 144-227 (257)
218 PRK02301 putative deoxyhypusin 25.7 2.9E+02 0.0063 25.9 7.2 18 188-205 174-191 (316)
219 smart00657 RPOL4c DNA-directed 25.6 3E+02 0.0064 21.5 6.4 59 245-313 55-113 (118)
220 TIGR01278 DPOR_BchB light-inde 25.6 4.9E+02 0.011 26.0 9.4 100 66-177 69-193 (511)
221 PF07287 DUF1446: Protein of u 25.6 2.3E+02 0.005 27.0 6.7 18 188-205 60-77 (362)
222 KOG1549 Cysteine desulfurase N 25.4 5.1E+02 0.011 25.4 8.9 63 139-203 145-215 (428)
223 PRK06015 keto-hydroxyglutarate 25.4 2E+02 0.0044 24.9 5.8 88 101-204 14-102 (201)
224 cd01948 EAL EAL domain. This d 25.4 4.3E+02 0.0093 22.5 8.7 102 102-206 97-209 (240)
225 PF04476 DUF556: Protein of un 25.3 4.9E+02 0.011 23.2 10.0 152 36-201 9-182 (235)
226 PF10171 DUF2366: Uncharacteri 25.3 1.4E+02 0.003 25.3 4.6 47 107-156 67-113 (173)
227 PRK10551 phage resistance prot 24.7 5E+02 0.011 26.0 9.3 114 81-205 349-473 (518)
228 cd02933 OYE_like_FMN Old yello 24.3 6E+02 0.013 23.9 13.7 23 35-57 142-171 (338)
229 PF01175 Urocanase: Urocanase; 24.1 2E+02 0.0043 28.7 5.9 123 44-180 108-257 (546)
230 PRK12323 DNA polymerase III su 23.9 4E+02 0.0087 27.8 8.3 79 101-185 105-185 (700)
231 PF04481 DUF561: Protein of un 23.9 3.7E+02 0.0081 23.8 7.0 113 20-150 17-146 (242)
232 cd00019 AP2Ec AP endonuclease 23.8 4.6E+02 0.0099 23.4 8.2 17 189-205 88-104 (279)
233 PRK07003 DNA polymerase III su 23.7 9.2E+02 0.02 25.8 14.1 95 101-201 100-197 (830)
234 PRK00208 thiG thiazole synthas 23.7 5.4E+02 0.012 23.2 14.5 105 99-205 72-181 (250)
235 TIGR00216 ispH_lytB (E)-4-hydr 23.5 5.4E+02 0.012 23.6 8.4 44 248-292 224-273 (280)
236 PHA02128 hypothetical protein 23.4 2E+02 0.0044 22.1 4.7 70 136-205 60-150 (151)
237 PF00697 PRAI: N-(5'phosphorib 23.0 71 0.0015 27.5 2.5 68 111-182 13-81 (197)
238 cd07948 DRE_TIM_HCS Saccharomy 22.9 5E+02 0.011 23.4 8.1 100 98-205 17-131 (262)
239 PRK08208 coproporphyrinogen II 22.8 5.8E+02 0.013 24.8 9.2 111 42-161 142-275 (430)
240 COG0820 Predicted Fe-S-cluster 22.3 4.5E+02 0.0098 25.0 7.8 86 123-209 215-329 (349)
241 PRK11267 biopolymer transport 22.2 2.2E+02 0.0048 22.9 5.2 55 99-158 80-134 (141)
242 TIGR01182 eda Entner-Doudoroff 21.7 2.8E+02 0.006 24.1 6.0 88 101-204 18-106 (204)
243 KOG2264 Exostosin EXT1L [Signa 21.7 2.8E+02 0.0061 28.1 6.5 59 64-136 632-692 (907)
244 PRK10200 putative racemase; Pr 21.6 5.1E+02 0.011 22.8 7.8 63 101-164 15-89 (230)
245 PRK01313 rnpA ribonuclease P; 21.6 4.2E+02 0.0092 21.1 7.0 62 78-147 47-113 (129)
246 PRK11024 colicin uptake protei 21.5 2.1E+02 0.0046 23.0 5.0 53 100-157 85-137 (141)
247 cd02803 OYE_like_FMN_family Ol 21.4 6.4E+02 0.014 23.1 13.5 94 79-178 206-310 (327)
248 COG0145 HyuA N-methylhydantoin 21.3 8.2E+02 0.018 25.6 10.2 99 34-135 135-247 (674)
249 cd01822 Lysophospholipase_L1_l 21.2 4.4E+02 0.0096 21.2 8.1 19 189-207 91-109 (177)
250 cd08590 PI-PLCc_Rv2075c_like C 21.1 3.1E+02 0.0066 24.9 6.4 15 43-57 46-60 (267)
251 PF01244 Peptidase_M19: Membra 21.0 1.8E+02 0.0039 27.2 5.0 107 38-158 160-271 (320)
252 cd03324 rTSbeta_L-fuconate_deh 20.9 7.8E+02 0.017 23.9 14.0 151 37-206 197-352 (415)
253 PRK11815 tRNA-dihydrouridine s 20.9 6.9E+02 0.015 23.3 10.9 134 36-179 75-233 (333)
254 COG0825 AccA Acetyl-CoA carbox 20.8 1E+02 0.0022 28.4 3.0 55 36-90 135-198 (317)
255 PRK14465 ribosomal RNA large s 20.7 5.8E+02 0.013 24.1 8.3 91 79-169 104-207 (342)
256 PRK13361 molybdenum cofactor b 20.5 6.9E+02 0.015 23.2 14.3 95 35-150 45-154 (329)
257 TIGR03597 GTPase_YqeH ribosome 20.4 7.3E+02 0.016 23.4 11.9 121 35-165 48-171 (360)
258 COG4943 Predicted signal trans 20.3 4.3E+02 0.0092 26.4 7.3 126 68-205 342-477 (524)
259 PF13518 HTH_28: Helix-turn-he 20.2 1.3E+02 0.0028 19.0 2.8 22 249-271 14-35 (52)
260 cd03313 enolase Enolase: Enola 20.0 8E+02 0.017 23.7 10.9 80 121-204 277-361 (408)
261 COG0761 lytB 4-Hydroxy-3-methy 20.0 3.9E+02 0.0084 24.7 6.6 69 188-292 203-277 (294)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=5e-68 Score=492.13 Aligned_cols=305 Identities=44% Similarity=0.668 Sum_probs=275.1
Q ss_pred CceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCC-CCCEE
Q 019368 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM-RERVE 83 (342)
Q Consensus 5 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~ 83 (342)
|++|+||++|++||+||||||.+|+.+. ..++.++.++|++|+++||||||||+.||.|.||++||+||+... |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 8899999999999999999999986422 224557888999999999999999999999999999999999854 89999
Q ss_pred EEeeeccccCC-CC--CCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCc
Q 019368 84 LATKFGISFAD-GG--KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC 160 (342)
Q Consensus 84 I~tK~~~~~~~-~~--~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 160 (342)
|+||++....+ +. ..+.++++|+++++.||+|||||||||||+||||...+.++++++|.+|+++||||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999987642 21 2578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CCcceeccccccCCcchhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcC-Ccchhh
Q 019368 161 AATIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCM-PKFQAE 238 (342)
Q Consensus 161 ~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~-~~~~~~ 238 (342)
.+++.++++. .+++++|.+||+++|..+.+++++|+++||++++|+||++|+|+ +++... ..+.+... +.+..+
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Lt-gk~~~~---~~~~r~~~~~~~~~~ 235 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLT-GKYLPG---PEGSRASELPRFQRE 235 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccC-CCcCCC---cchhhccccccchhh
Confidence 9999999999 59999999999999877778999999999999999999999999 664433 22333322 667777
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhhccC
Q 019368 239 NLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASAD 314 (342)
Q Consensus 239 ~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~~~~ 314 (342)
..+.....+..++++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++..|+++++++|++.....
T Consensus 236 ~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~~ 311 (316)
T COG0667 236 LTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAEE 311 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhhc
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999887543
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.3e-66 Score=473.53 Aligned_cols=317 Identities=45% Similarity=0.679 Sum_probs=281.9
Q ss_pred CCCceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC--CCCC
Q 019368 3 GTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRE 80 (342)
Q Consensus 3 ~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~ 80 (342)
..|.++.+|++|++||++|||+|.+.. |+...+++++++++++|+++|+||||||++||.|.||.++|++|++ .+|+
T Consensus 10 ~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~ 88 (336)
T KOG1575|consen 10 LGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD 88 (336)
T ss_pred hcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC
Confidence 468899999999999999999985533 4444689999999999999999999999999999999999999998 5899
Q ss_pred CEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCc
Q 019368 81 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC 160 (342)
Q Consensus 81 ~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 160 (342)
+++|+||++...........++..+...++.|+++||++||||||+||+|+..++++++++|.+++++||||+||+|+++
T Consensus 89 ~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~s 168 (336)
T KOG1575|consen 89 KVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWS 168 (336)
T ss_pred cEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCC
Confidence 99999999876522224577889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC--cceeccccccCCcchh-hhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhh----cCC
Q 019368 161 AATIRRAHAVHP--ITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRK----CMP 233 (342)
Q Consensus 161 ~~~l~~~~~~~~--~~~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~----~~~ 233 (342)
++++.+++...+ +.++|++||++.|..+ .++++.|++.||++++||||++|+|+++.....+.+.++.+. ..+
T Consensus 169 a~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~ 248 (336)
T KOG1575|consen 169 AEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSP 248 (336)
T ss_pred HHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccccccc
Confidence 999999999876 9999999999999854 569999999999999999999999993334445566555432 223
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhhcc
Q 019368 234 KFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASA 313 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~~~ 313 (342)
++... ..++.+++++.++|+++|+|++|+||+|+++++.|++||||+++++|++||++|+.+.||++++.+|+++.++
T Consensus 249 ~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~ 326 (336)
T KOG1575|consen 249 QTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDK 326 (336)
T ss_pred ccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhcc
Confidence 33333 6678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 019368 314 DAVKGDRYP 322 (342)
Q Consensus 314 ~~~~~~~~~ 322 (342)
....+++|.
T Consensus 327 ~~~~~~~~~ 335 (336)
T KOG1575|consen 327 ILGFGPRSI 335 (336)
T ss_pred ccCcCCCCC
Confidence 888888774
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.7e-61 Score=451.33 Aligned_cols=298 Identities=28% Similarity=0.428 Sum_probs=250.6
Q ss_pred eeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC--CCCCCEEE
Q 019368 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVEL 84 (342)
Q Consensus 7 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~I 84 (342)
||+||++|++||+||||||.+ +|...+++++.++|+.|+++|||+||||+.||.|.||+++|++|+. .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999974 2333467889999999999999999999999999999999999985 36999999
Q ss_pred EeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHH
Q 019368 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (342)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 164 (342)
+||++.........+.+++.+++++++||++||+||||+|++|||++..+++++|++|++|+++||||+||+|||+.+++
T Consensus 78 aTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l 157 (317)
T TIGR01293 78 TTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEI 157 (317)
T ss_pred EeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Confidence 99986421100113468999999999999999999999999999998888999999999999999999999999999998
Q ss_pred HHHHhc------CCcceeccccccCCcch-hhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCC---c
Q 019368 165 RRAHAV------HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMP---K 234 (342)
Q Consensus 165 ~~~~~~------~~~~~~q~~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~---~ 234 (342)
+++... .+++++|++||++.+.. +..++++|+++||++++|+||++|+|+ +++... .+.+. +...+ +
T Consensus 158 ~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt-g~~~~~-~~~~~-~~~~~~~~~ 234 (317)
T TIGR01293 158 MEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS-GKYDSG-IPPYS-RATLKGYQW 234 (317)
T ss_pred HHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC-CCCCCC-CCCcc-cccccccch
Confidence 776443 47889999999999863 568999999999999999999999999 554222 22221 11111 0
Q ss_pred c----hhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccC--CCCHHHHHHHH
Q 019368 235 F----QAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSV--KLAPEEMAELD 308 (342)
Q Consensus 235 ~----~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~--~Lt~~~~~~i~ 308 (342)
+ ..+......+.++.++++|+++|+|++|+||+|++++|.|+++|+|+++++|+++|+++++. +||++++++|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~ 314 (317)
T TIGR01293 235 LKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEID 314 (317)
T ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 1 11222345667789999999999999999999999999999999999999999999999987 99999999999
Q ss_pred hh
Q 019368 309 SI 310 (342)
Q Consensus 309 ~~ 310 (342)
++
T Consensus 315 ~~ 316 (317)
T TIGR01293 315 SI 316 (317)
T ss_pred hh
Confidence 75
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.4e-60 Score=449.83 Aligned_cols=306 Identities=29% Similarity=0.475 Sum_probs=254.2
Q ss_pred CCCceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCC--CcHHHHHHHHhcCC---
Q 019368 3 GTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGP--YTNEILVGKALKGG--- 77 (342)
Q Consensus 3 ~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--g~sE~~lG~al~~~--- 77 (342)
..|++|+||+||++||+||||||.. +|...+.+++.++|+.|+++|||+||||+.||. |.||++||++|++.
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccC
Confidence 3589999999999999999999962 333335677899999999999999999999995 89999999999862
Q ss_pred CCCCEEEEeeeccccCCC-CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEec
Q 019368 78 MRERVELATKFGISFADG-GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL 156 (342)
Q Consensus 78 ~R~~~~I~tK~~~~~~~~-~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGv 156 (342)
.|++++|+||+|.....+ .....+++.+++++++||++||+||||+|++|||+...+.++++++|++|+++||||+|||
T Consensus 88 ~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGv 167 (346)
T PRK09912 88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGI 167 (346)
T ss_pred CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEe
Confidence 699999999997531111 1134679999999999999999999999999999988889999999999999999999999
Q ss_pred CCCcHHHHHHHHhc-----CCcceeccccccCCcchh-hhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhh
Q 019368 157 SEACAATIRRAHAV-----HPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRK 230 (342)
Q Consensus 157 S~~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~ 230 (342)
|||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|+ +++... .|.+....
T Consensus 168 Sn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt-~~~~~~-~~~~~~~~ 245 (346)
T PRK09912 168 SSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT-GKYLNG-IPQDSRMH 245 (346)
T ss_pred cCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcccc-CCCCCC-CCCCcccc
Confidence 99999988765542 367899999999998644 47999999999999999999999999 543221 11111000
Q ss_pred ----cCCcchhhh-hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhc-cCCCCHHHH
Q 019368 231 ----CMPKFQAEN-LEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQAL-SVKLAPEEM 304 (342)
Q Consensus 231 ----~~~~~~~~~-~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~-~~~Lt~~~~ 304 (342)
..+.+.+.. .+...+.+..++++|+++|+|++|+||+|++++|.|++||+|+++++|+++|++++ .++|+++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~ 325 (346)
T PRK09912 246 REGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEEL 325 (346)
T ss_pred ccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHH
Confidence 001111111 13456677899999999999999999999999999999999999999999999998 489999999
Q ss_pred HHHHhhhcc
Q 019368 305 AELDSIASA 313 (342)
Q Consensus 305 ~~i~~~~~~ 313 (342)
++|+++.++
T Consensus 326 ~~l~~~~~~ 334 (346)
T PRK09912 326 AQIDQHIAD 334 (346)
T ss_pred HHHHHhhCc
Confidence 999998754
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.6e-60 Score=448.50 Aligned_cols=303 Identities=29% Similarity=0.413 Sum_probs=251.9
Q ss_pred CceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCC-------CCcHHHHHHHHhcC-
Q 019368 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYG-------PYTNEILVGKALKG- 76 (342)
Q Consensus 5 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-------~g~sE~~lG~al~~- 76 (342)
|++|+||+||++||+||||||.+|+ ..+++++.++|+.|+++|||+||||+.|| .|.||..+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999853 23578899999999999999999999998 48899999999985
Q ss_pred CCCCCEEEEeeeccccCC-C----CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-----------------CCC
Q 019368 77 GMRERVELATKFGISFAD-G----GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----------------KIP 134 (342)
Q Consensus 77 ~~R~~~~I~tK~~~~~~~-~----~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~-----------------~~~ 134 (342)
..|++++|+||++..... + .....+++.+++++++||++||+||||||++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 369999999998642110 0 012468999999999999999999999999999975 245
Q ss_pred HHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhc------CCcceeccccccCCcchhhhHHHHHHHhCCeEEecccc
Q 019368 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV------HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPL 208 (342)
Q Consensus 135 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl 208 (342)
++++|++|++|+++||||+||+|||+.++++++... ..++++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776432 35788999999999876678999999999999999999
Q ss_pred cccccCCCCCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHH
Q 019368 209 GQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQL 288 (342)
Q Consensus 209 ~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l 288 (342)
++|+|+ +++.....+.+......+.|.....+...+..+.++++|+++|+|++|+||+|++++|.|+++|+|+++++|+
T Consensus 237 ~~G~Lt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l 315 (346)
T PRK10625 237 AFGTLT-GKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQL 315 (346)
T ss_pred cCeecc-CCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHH
Confidence 999999 5432222222110000111111112345667889999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHhhhc
Q 019368 289 NENIQALSVKLAPEEMAELDSIAS 312 (342)
Q Consensus 289 ~~~l~a~~~~Lt~~~~~~i~~~~~ 312 (342)
++|+++++++|+++++++|+++.+
T Consensus 316 ~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 316 KTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999874
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.8e-60 Score=425.91 Aligned_cols=259 Identities=34% Similarity=0.495 Sum_probs=232.6
Q ss_pred CCceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC--CCCCC
Q 019368 4 TVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRER 81 (342)
Q Consensus 4 ~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~ 81 (342)
+|.+.+| ++|.+||.||||||.+++ .+...+.|..|++.|+|+||||..|| +|+.+|+++++ .+|++
T Consensus 2 ~~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 2 MKTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREE 70 (280)
T ss_pred CCceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHH
Confidence 4566778 667889999999999842 23388999999999999999999999 89999999988 58999
Q ss_pred EEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHcCCccEEecCCC
Q 019368 82 VELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIGLSEA 159 (342)
Q Consensus 82 ~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~--~~~~~~~~~L~~l~~~G~ir~iGvS~~ 159 (342)
+||+||++.. +.+++.+.+++++||++||+||+|||+||||.+. ..+.|+|++|++++++|+||+||||||
T Consensus 71 lFittKvw~~-------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF 143 (280)
T COG0656 71 LFITTKVWPS-------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNF 143 (280)
T ss_pred eEEEeecCCc-------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCC
Confidence 9999999986 5578999999999999999999999999999763 337899999999999999999999999
Q ss_pred cHHHHHHHHhc--CCcceeccccccCCcchhhhHHHHHHHhCCeEEecccccccc-cCCCCCCCCCCCcchhhhcCCcch
Q 019368 160 CAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGF-LSSGPKLVESFSKYDFRKCMPKFQ 236 (342)
Q Consensus 160 ~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~-l~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
+.++|+++++. ..|+++|++||++.++ .++++||+++||.+++||||+.|. +.+
T Consensus 144 ~~~~L~~l~~~~~~~p~~NQIe~hp~~~q--~el~~~~~~~gI~v~AysPL~~g~~l~~--------------------- 200 (280)
T COG0656 144 GVEHLEELLSLAKVKPAVNQIEYHPYLRQ--PELLPFCQRHGIAVEAYSPLAKGGKLLD--------------------- 200 (280)
T ss_pred CHHHHHHHHHhcCCCCceEEEEeccCCCc--HHHHHHHHHcCCEEEEECCccccccccc---------------------
Confidence 99999999887 4599999999999995 459999999999999999999654 331
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhhccCC
Q 019368 237 AENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASADA 315 (342)
Q Consensus 237 ~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~~~~~ 315 (342)
-..+.+||++||.|++|++|+|+++++. +|||.+++++|+++|++++++.||++||++|+++.....
T Consensus 201 ----------~~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 201 ----------NPVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred ----------ChHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 1389999999999999999999999994 899999999999999999999999999999999986543
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.4e-58 Score=429.72 Aligned_cols=286 Identities=27% Similarity=0.407 Sum_probs=243.1
Q ss_pred eeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC--CCCCCEEE
Q 019368 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVEL 84 (342)
Q Consensus 7 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~I 84 (342)
||+||+||++||.||||||++|+.|+. .+++++.++|+.|+++|||+||||+.||.|.||..+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 688999999999999999999866654 467899999999999999999999999999999999999987 37999999
Q ss_pred EeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC---CCHHHHHHHHHHHHHcCCccEEecCCCcH
Q 019368 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK---IPIEVTIGELKKLVEEGKIKYIGLSEACA 161 (342)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~---~~~~~~~~~L~~l~~~G~ir~iGvS~~~~ 161 (342)
+||++.... ..+++++.+++++++||++||+||||+|+||||+.. .+++++|++|++|+++||||+||+|||+.
T Consensus 80 ~TK~~~~~~---~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 156 (314)
T PLN02587 80 STKCGRYGE---GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPL 156 (314)
T ss_pred EeccccCCC---CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCH
Confidence 999985321 125689999999999999999999999999999743 34678999999999999999999999999
Q ss_pred HHHHHHHhc---C--CcceeccccccCCcchhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcch
Q 019368 162 ATIRRAHAV---H--PITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQ 236 (342)
Q Consensus 162 ~~l~~~~~~---~--~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
++++.+... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+ ++.... +.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~-~~~~~~-------------~~ 221 (314)
T PLN02587 157 AIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLT-ENGPPE-------------WH 221 (314)
T ss_pred HHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccC-CCCCCC-------------CC
Confidence 888776553 2 2334578888877643 48999999999999999999999998 432110 00
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhcc----CCCCHHHHHHHHhhhc
Q 019368 237 AENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALS----VKLAPEEMAELDSIAS 312 (342)
Q Consensus 237 ~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~----~~Lt~~~~~~i~~~~~ 312 (342)
+ ..+...+.++.++++|+++++|++|+||+|++++|.|++||+|+++++|+++|+++.+ .+|+++++++|+++..
T Consensus 222 ~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 222 P-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred C-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 0 0133456678899999999999999999999999999999999999999999999976 3799999999999875
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=4.3e-57 Score=416.08 Aligned_cols=281 Identities=41% Similarity=0.619 Sum_probs=249.5
Q ss_pred eeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCC-CCCEEEE
Q 019368 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM-RERVELA 85 (342)
Q Consensus 7 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~I~ 85 (342)
+|+||+||++||+||||||.++..| .+.+++.++++.|++.|||+||||+.||.|.||+.+|++|+... |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987544 36789999999999999999999999999999999999999865 9999999
Q ss_pred eeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHcCCccEEecCCCcHHHH
Q 019368 86 TKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (342)
Q Consensus 86 tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~-~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 164 (342)
||++...... .+.+++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+||||||+.+.+
T Consensus 78 tK~~~~~~~~--~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 155 (285)
T cd06660 78 TKVGPRPGDG--RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQL 155 (285)
T ss_pred eeecCCCCCC--CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHH
Confidence 9998653211 3468999999999999999999999999999988766 889999999999999999999999999999
Q ss_pred HHHHhc--CCcceeccccccCCcchhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHH
Q 019368 165 RRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEH 242 (342)
Q Consensus 165 ~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
.++... .+|+++|++||++++....+++++|+++||++++|+||++|.+..........+ .
T Consensus 156 ~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~------------~----- 218 (285)
T cd06660 156 EEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP------------E----- 218 (285)
T ss_pred HHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC------------h-----
Confidence 999888 899999999999999765679999999999999999999999883222111100 0
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhh
Q 019368 243 NKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSI 310 (342)
Q Consensus 243 ~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~ 310 (342)
......+..+++++++|++|+|++|++++|.+++||+|+++++|+++|+++..++||++++++|+++
T Consensus 219 -~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 219 -GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred -hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 1145689999999999999999999999999999999999999999999999999999999999863
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=9.3e-57 Score=414.32 Aligned_cols=280 Identities=28% Similarity=0.450 Sum_probs=241.6
Q ss_pred CCCCCceeeCCCCCceeCcceeccccccC--cCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCC
Q 019368 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSC--LYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM 78 (342)
Q Consensus 1 ~~~~m~~~~lg~tg~~vs~lglGt~~~g~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~ 78 (342)
|+-.|...++.-+|++||+||||||++|+ .||...+++++.++|+.|+++|||+||||+.||+|.+|+++|++++. .
T Consensus 1 ~~~~~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~ 79 (290)
T PRK10376 1 MSTIMSSGTFTLGGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-Y 79 (290)
T ss_pred CcccccCCceecCCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-C
Confidence 55666655544459999999999999975 36655567889999999999999999999999999999999999976 6
Q ss_pred CCCEEEEeeeccccCCC--CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHcCCc
Q 019368 79 RERVELATKFGISFADG--GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEEGKI 151 (342)
Q Consensus 79 R~~~~I~tK~~~~~~~~--~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~-----~~~~~~~~~~L~~l~~~G~i 151 (342)
|++++|+||++...... .....+++.+++++++||++||+||||+|++|+++. ..+++++|++|++|+++|||
T Consensus 80 R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gki 159 (290)
T PRK10376 80 PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLV 159 (290)
T ss_pred CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCce
Confidence 99999999997543211 123568999999999999999999999999988521 23478999999999999999
Q ss_pred cEEecCCCcHHHHHHHHhcCCcceeccccccCCcchhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhc
Q 019368 152 KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKC 231 (342)
Q Consensus 152 r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~ 231 (342)
|+||||||+.++++++.+..+++++|++||++++. ..+++++|+++||++++|+||+++...
T Consensus 160 r~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~~~~----------------- 221 (290)
T PRK10376 160 RHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGFTPL----------------- 221 (290)
T ss_pred eEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCCChh-----------------
Confidence 99999999999999998888999999999999876 357999999999999999999743100
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhh
Q 019368 232 MPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIA 311 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~ 311 (342)
..+.++++|+++++|++|+||+|+++++.++++|+|+++++|+++|+++++++|+++++++|+++.
T Consensus 222 --------------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~ 287 (290)
T PRK10376 222 --------------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIA 287 (290)
T ss_pred --------------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 024789999999999999999999998777789999999999999999999999999999999987
Q ss_pred cc
Q 019368 312 SA 313 (342)
Q Consensus 312 ~~ 313 (342)
++
T Consensus 288 ~~ 289 (290)
T PRK10376 288 RE 289 (290)
T ss_pred hc
Confidence 54
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.3e-56 Score=408.98 Aligned_cols=277 Identities=33% Similarity=0.474 Sum_probs=232.2
Q ss_pred cceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC--CCCCCEEEEeeeccccCCCC
Q 019368 19 AQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVELATKFGISFADGG 96 (342)
Q Consensus 19 ~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~I~tK~~~~~~~~~ 96 (342)
+||||||++|+. ..+.+++.++|+.|++.|||+||||+.||+|.||++||++|+. .+|++++|+||+.... ..
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~--~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDG--KP 75 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSS--ST
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccc--cc
Confidence 589999998643 5588999999999999999999999999999999999999988 6999999999991111 12
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHcCCccEEecCCCcHHHHHHH--HhcCCc
Q 019368 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGLSEACAATIRRA--HAVHPI 173 (342)
Q Consensus 97 ~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~-~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~--~~~~~~ 173 (342)
....+++.+++++++||++||+||||+|+||+|+.... .+++|++|++|+++|+||+||||||+++.++.+ ....+|
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 155 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPP 155 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-E
T ss_pred cccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccc
Confidence 24678999999999999999999999999999999988 899999999999999999999999999999999 556889
Q ss_pred ceeccccccCCcchhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHHHHH
Q 019368 174 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEI 253 (342)
Q Consensus 174 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 253 (342)
+++|++||++.+....+++++|+++||++++|+|+++|.|++........+.... ....++....+.++
T Consensus 156 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~ 224 (283)
T PF00248_consen 156 DVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRAS-----------LRDAQELADALREL 224 (283)
T ss_dssp SEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSG-----------SSTHGGGHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccCccccccccCCCcccccc-----------cchhhhhhhhhhhh
Confidence 9999999999776678999999999999999999999999833222211111110 00134556799999
Q ss_pred HHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhh
Q 019368 254 AMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIA 311 (342)
Q Consensus 254 a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~ 311 (342)
++++|+|++|+||+|+++++.+.+||+|+++++|+++|+++++++||++++++|++++
T Consensus 225 a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 225 AEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999875
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.5e-55 Score=394.05 Aligned_cols=264 Identities=30% Similarity=0.454 Sum_probs=233.5
Q ss_pred CCCCCceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC----
Q 019368 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG---- 76 (342)
Q Consensus 1 ~~~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~---- 76 (342)
|+... +.+| ++|.++|.||||||+. +..+..+.++.|++.|+||||||..|+ +|..+|++|++
T Consensus 1 M~~~~-~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~ 67 (300)
T KOG1577|consen 1 MSSKT-TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAE 67 (300)
T ss_pred CCccc-eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhh
Confidence 34433 6788 8999999999999983 567899999999999999999999999 79999999984
Q ss_pred --CCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC----------------CCHHHH
Q 019368 77 --GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----------------IPIEVT 138 (342)
Q Consensus 77 --~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~----------------~~~~~~ 138 (342)
.+|+++||+||++.. ...++.++.++++||++||+||+|+|++|||-.. .+..++
T Consensus 68 ~~v~RediFiTSKlw~~-------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~t 140 (300)
T KOG1577|consen 68 GGVKREDIFITSKLWPT-------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIET 140 (300)
T ss_pred CCcchhhheeeeccCcc-------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHH
Confidence 499999999999975 4578999999999999999999999999999553 246689
Q ss_pred HHHHHHHHHcCCccEEecCCCcHHHHHHHHhc--CCcceeccccccCCcchhhhHHHHHHHhCCeEEecccccccccCCC
Q 019368 139 IGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSG 216 (342)
Q Consensus 139 ~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~ 216 (342)
|++||++++.|++|+||||||+..+|++++.. .+|.++|+++|+..+ +.++++||+++||.+.|||||+.+--.
T Consensus 141 W~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~~-- 216 (300)
T KOG1577|consen 141 WKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGRG-- 216 (300)
T ss_pred HHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCCc--
Confidence 99999999999999999999999999999887 789999999999877 468999999999999999999975210
Q ss_pred CCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhcc
Q 019368 217 PKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALS 296 (342)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~ 296 (342)
. .+. .-+.+.+||++|+.|++|++|||.++++. +|||.+++++|+++|+++++
T Consensus 217 --~--~ll---------------------~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfd 269 (300)
T KOG1577|consen 217 --S--DLL---------------------EDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFD 269 (300)
T ss_pred --c--ccc---------------------cCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhcc
Confidence 0 000 01489999999999999999999999987 89999999999999999999
Q ss_pred CCCCHHHHHHHHhhhccCC
Q 019368 297 VKLAPEEMAELDSIASADA 315 (342)
Q Consensus 297 ~~Lt~~~~~~i~~~~~~~~ 315 (342)
+.||++|++.|+......+
T Consensus 270 f~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 270 FELTEEDMKKLDSLNSNER 288 (300)
T ss_pred ccCCHHHHHHHhhccccce
Confidence 9999999999998776554
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.3e-54 Score=395.43 Aligned_cols=245 Identities=28% Similarity=0.416 Sum_probs=220.5
Q ss_pred eeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC--CCCCCEEEEeeeccccC
Q 019368 16 EVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVELATKFGISFA 93 (342)
Q Consensus 16 ~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~I~tK~~~~~~ 93 (342)
+||.||||||+++ .+++.++++.|++.|||+||||+.|| +|..+|++|++ .+|++++|+||++..
T Consensus 2 ~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~-- 68 (267)
T PRK11172 2 SIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID-- 68 (267)
T ss_pred CCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC--
Confidence 6899999999862 36799999999999999999999999 69999999985 369999999998642
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhc-
Q 019368 94 DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV- 170 (342)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~--~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~- 170 (342)
..+++.+++++++||++||+||||+|++|||++. .+.+++|++|++|+++||||+||||||+.++++++++.
T Consensus 69 -----~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~ 143 (267)
T PRK11172 69 -----NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAV 143 (267)
T ss_pred -----CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhc
Confidence 4578999999999999999999999999999764 56789999999999999999999999999999888764
Q ss_pred --CCcceeccccccCCcchhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHHHHHHHH
Q 019368 171 --HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFE 248 (342)
Q Consensus 171 --~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
.+++++|++||++.+. .+++++|+++||++++|+||++|.+.. ..
T Consensus 144 ~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~-------------------------------~~ 190 (267)
T PRK11172 144 GAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLK-------------------------------DP 190 (267)
T ss_pred CCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccC-------------------------------CH
Confidence 3689999999999874 689999999999999999999986541 02
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhhcc
Q 019368 249 RVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASA 313 (342)
Q Consensus 249 ~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~~~ 313 (342)
.++++|+++|+|++|+||+|+++++. +||+|+++++|+++|+++++++||++++++|+++.+.
T Consensus 191 ~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 191 VIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 68899999999999999999999974 6999999999999999999999999999999998754
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.9e-54 Score=397.18 Aligned_cols=279 Identities=20% Similarity=0.259 Sum_probs=232.7
Q ss_pred CceeCcceeccccccCc-------CCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEe
Q 019368 14 GLEVSAQGLGCMAMSCL-------YGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELAT 86 (342)
Q Consensus 14 g~~vs~lglGt~~~g~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~t 86 (342)
+++||+||||||.+|+. |+. .+++++.++|+.|+++|||+||||+.||. ||..+|++|+...+.+++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999853 343 47899999999999999999999999975 999999999863346788888
Q ss_pred eeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCH-HHHHHHHHHHHHcCCccEEecCCCcHHHH
Q 019368 87 KFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPI-EVTIGELKKLVEEGKIKYIGLSEACAATI 164 (342)
Q Consensus 87 K~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~-~~~-~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 164 (342)
|.. ..+++.+++++++||+|||+||||+|++|+|+.. .+. +++|++|++|+++||||+||||||+++++
T Consensus 79 k~~---------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~ 149 (292)
T PRK14863 79 VRA---------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDP 149 (292)
T ss_pred ccc---------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHH
Confidence 842 2368999999999999999999999999999763 333 67899999999999999999999999999
Q ss_pred HHHHhcCCcceeccccccCCcchh-hhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHHH
Q 019368 165 RRAHAVHPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHN 243 (342)
Q Consensus 165 ~~~~~~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
..+....+|+++|++||++++..+ .+++++|+++||++++|+||++|+|. +.. ...+ ..+...
T Consensus 150 ~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~-~~~--~~~~-------------~~~~~~ 213 (292)
T PRK14863 150 VGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLF-LPP--DRVP-------------AQLKGA 213 (292)
T ss_pred HHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcccc-CCc--ccCc-------------cchhhh
Confidence 888877899999999999998653 46999999999999999999999997 221 0000 011122
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhhccCCCCCCCC
Q 019368 244 KKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASADAVKGDRY 321 (342)
Q Consensus 244 ~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~~~~~~~~~~~ 321 (342)
...+..+.+++.+.++|++|+||+|++++|.|+++|+|+++++|+++|+++.+.+++++.+++|..-.. ..+++.+|
T Consensus 214 ~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~~-~~~~~~~~ 290 (292)
T PRK14863 214 SGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDDP-VALDPRRW 290 (292)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCChh-hccCcccc
Confidence 344567788888889999999999999999999999999999999999999999999988888754332 44444444
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=5.1e-53 Score=386.29 Aligned_cols=260 Identities=28% Similarity=0.389 Sum_probs=226.6
Q ss_pred CCCCCceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCC--C
Q 019368 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG--M 78 (342)
Q Consensus 1 ~~~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~--~ 78 (342)
|++.+. ..| ++|++||.||||||++ +.+++.++|+.|++.|+|+||||+.|| +|+.+|++|+.. +
T Consensus 1 ~~~~~~-~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~ 67 (275)
T PRK11565 1 MANPTV-IKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVA 67 (275)
T ss_pred CCCCce-EEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCC
Confidence 444333 557 8999999999999975 457899999999999999999999998 799999999863 6
Q ss_pred CCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCccEEecC
Q 019368 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLS 157 (342)
Q Consensus 79 R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~~L~~l~~~G~ir~iGvS 157 (342)
|++++|+||++.. +++.+++++++||++||+||||+|++|+|++.. +..++|++|++|+++|+||+||||
T Consensus 68 R~~~~i~tK~~~~---------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 68 REELFITTKLWND---------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred HHHEEEEEEecCc---------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeec
Confidence 9999999998632 578899999999999999999999999998753 478999999999999999999999
Q ss_pred CCcHHHHHHHHhc--CCcceeccccccCCcchhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcc
Q 019368 158 EACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKF 235 (342)
Q Consensus 158 ~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
||+.+++++++.. ..+.++|++|+++.+ +.+++++|+++||.+++|+||++|... . +
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~--~~~~~~~~~~~~i~~~a~spl~~G~~~--~-----------------~ 197 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLMQ--QRQLHAWNATHKIQTESWSPLAQGGKG--V-----------------F 197 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCccc--hHHHHHHHHHCCCEEEEEccCCCCCcc--c-----------------c
Confidence 9999999988754 357889999999887 367999999999999999999976310 0 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhhccCC
Q 019368 236 QAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASADA 315 (342)
Q Consensus 236 ~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~~~~~ 315 (342)
. .+.+.++|+++|+|++|+||+|+++++. +||+|+++++|+++|+++++++|+++++++|+++.....
T Consensus 198 ~----------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 198 D----------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred c----------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 0 1478999999999999999999999975 689999999999999999999999999999999975443
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.1e-53 Score=364.66 Aligned_cols=283 Identities=29% Similarity=0.457 Sum_probs=254.5
Q ss_pred CceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC--CCCCCE
Q 019368 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERV 82 (342)
Q Consensus 5 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~ 82 (342)
|++.+|++.|+.+|+|.+|+|++.. |+ .+..+...++..|++.|||+||-|+.||++.+|.++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999964 23 245789999999999999999999999999999999999975 489999
Q ss_pred EEEeeeccccCCC-----CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecC
Q 019368 83 ELATKFGISFADG-----GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (342)
Q Consensus 83 ~I~tK~~~~~~~~-----~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS 157 (342)
.|+||||...... ...+.+.++|..|++.||++|+|||+|+++||+||+..+.+|+.+|+..|.++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999754322 45788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhc--CCcceeccccccCCcc-hhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCc
Q 019368 158 EACAATIRRAHAV--HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPK 234 (342)
Q Consensus 158 ~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~ 234 (342)
||++.+++-+-.. ..++.+|++.|+++.. ..++.+++|+++.|..++||||++|.+..|.
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~----------------- 220 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD----------------- 220 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------
Confidence 9999998887666 5588999999998865 3468999999999999999999998665331
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhhcc
Q 019368 235 FQAENLEHNKKLFERVNEIAMRKG-CTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASA 313 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~ia~~~~-~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~~~ 313 (342)
++.+++..+|..||+++| .|..+++++|++.+|.-..||+|+.+++++++.+++++..||.++|-+|..+...
T Consensus 221 ------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 221 ------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred ------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 235667789999999999 7999999999999999999999999999999999999999999999999888643
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=5e-50 Score=346.28 Aligned_cols=310 Identities=24% Similarity=0.294 Sum_probs=255.3
Q ss_pred CCceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEE
Q 019368 4 TVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVE 83 (342)
Q Consensus 4 ~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~ 83 (342)
+|+||.||+||++||+||||+..++..|+.. ++++....+..|+++|||+||||+.||.++||..+|.++++.+|+.++
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 6899999999999999999999999888873 677777777779999999999999999999999999999999999999
Q ss_pred EEeeeccccCCC-CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC----CCHHHHHHHHHHHHHcCCccEEecCC
Q 019368 84 LATKFGISFADG-GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----IPIEVTIGELKKLVEEGKIKYIGLSE 158 (342)
Q Consensus 84 I~tK~~~~~~~~-~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~----~~~~~~~~~L~~l~~~G~ir~iGvS~ 158 (342)
|+||++...-+. ..++++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|+++|++||||+|||+.
T Consensus 100 IaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitg 179 (342)
T KOG1576|consen 100 IATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITG 179 (342)
T ss_pred eeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecc
Confidence 999998653322 3478999999999999999999999999999987654 34679999999999999999999999
Q ss_pred CcHHHHHHHHhc--CCcceec--cccccCCcchhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCc
Q 019368 159 ACAATIRRAHAV--HPITAVQ--LEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPK 234 (342)
Q Consensus 159 ~~~~~l~~~~~~--~~~~~~q--~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~ 234 (342)
++...+.++++. +.++++. .+|++.+.. .-..+++.+..|++|+.-++++.|+|+ ...++..-|
T Consensus 180 ypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt-~~gp~~wHP---------- 247 (342)
T KOG1576|consen 180 YPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLT-NQGPPPWHP---------- 247 (342)
T ss_pred cchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhh-cCCCCCCCC----------
Confidence 999999999887 4477776 555554432 236777888999999999999999999 332222111
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhhccC
Q 019368 235 FQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASAD 314 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~~~~ 314 (342)
..++..+...+-.++|.+.+++.+.+|+.|.++.++++++++|+++.++++.|+++....||..+-++...+.++.
T Consensus 248 ----aS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r~~ 323 (342)
T KOG1576|consen 248 ----ASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILREI 323 (342)
T ss_pred ----CCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence 2344555666778899999999999999999999999999999999999999999866688885555555554321
Q ss_pred CCCCCCCCCccccccCCCCCC
Q 019368 315 AVKGDRYPDGVTTYKDSDTPP 335 (342)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~ 335 (342)
. . ...+..|+++.+.|
T Consensus 324 ~--~---~~kn~~W~g~~~~~ 339 (342)
T KOG1576|consen 324 L--K---ETKNEEWEGGILHP 339 (342)
T ss_pred h--h---hhccCCCCCCCCcc
Confidence 1 0 12377788876654
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=3.5e-50 Score=363.05 Aligned_cols=272 Identities=29% Similarity=0.371 Sum_probs=242.7
Q ss_pred CceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEE
Q 019368 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVEL 84 (342)
Q Consensus 5 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I 84 (342)
|.||++|+||.++|.||||+|++...|....+++.+.++|+.|+++|||+||||..|..|.||..+|+||++..|+++.+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 88999999999999999999999766666668899999999999999999999999988889999999999989999999
Q ss_pred EeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHH-----HHHHHHHHHHHcCCccEEecCCC
Q 019368 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE-----VTIGELKKLVEEGKIKYIGLSEA 159 (342)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~-----~~~~~L~~l~~~G~ir~iGvS~~ 159 (342)
+||+..+. --+++++++-++++|++||+||+|+|+||..+. ..++ ..+++++++|++|+||++|+|.|
T Consensus 81 aTKlp~~~------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSfH 153 (391)
T COG1453 81 ATKLPSWP------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFH 153 (391)
T ss_pred EeecCCcc------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecCC
Confidence 99998653 347899999999999999999999999999987 4443 46999999999999999999998
Q ss_pred -cHHHHHHHHhcCCcceeccccccCCcchh--hhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcch
Q 019368 160 -CAATIRRAHAVHPITAVQLEWSLWSRDVE--AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQ 236 (342)
Q Consensus 160 -~~~~l~~~~~~~~~~~~q~~~~~~~~~~~--~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
+.+.+.+++...+++++|++||+++.... .+.+++|.++|++|+.++|+.+|-|... . |
T Consensus 154 gs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~------v---------P--- 215 (391)
T COG1453 154 GSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN------V---------P--- 215 (391)
T ss_pred CCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC------C---------C---
Confidence 66789999999999999999999987644 3899999999999999999999987711 1 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccC--C-CCHHHHHHHHhhh
Q 019368 237 AENLEHNKKLFERVNEIAMRKG--CTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSV--K-LAPEEMAELDSIA 311 (342)
Q Consensus 237 ~~~~~~~~~~~~~l~~ia~~~~--~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~--~-Lt~~~~~~i~~~~ 311 (342)
+++.+|..++. .||+.+|+||++++|.|++|++|+++++|++||++..+. + ||+++++.|.++.
T Consensus 216 -----------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~ 284 (391)
T COG1453 216 -----------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVE 284 (391)
T ss_pred -----------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHH
Confidence 37788888775 689999999999999999999999999999999998864 3 9999988887765
Q ss_pred c
Q 019368 312 S 312 (342)
Q Consensus 312 ~ 312 (342)
+
T Consensus 285 ~ 285 (391)
T COG1453 285 E 285 (391)
T ss_pred H
Confidence 3
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.87 E-value=3.6e-05 Score=66.98 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhc--CCcceeccccccCCcchhhhHHHHHHHhCCeEEecc
Q 019368 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYG 206 (342)
Q Consensus 135 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~ 206 (342)
+.+.|+.||+++.+|+|..||+|.+++.+|++++.. ..|.++|+...-...- -.++.+||.+++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvv-PpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVV-PPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccC-CHHHHHHhhhcceeeeecC
Confidence 457899999999999999999999999999999987 4567777766654432 2589999999999998864
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.07 E-value=4.4 Score=37.69 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCC--cHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPY--TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g--~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL 113 (342)
+.++..+.++.+.+.|++.|+.-- |.. ...+.+- ++++.-. ++-|.-+... .++.+.. ..+-+.|
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~-~lr~~~g-~~~l~vD~n~--------~~~~~~A-~~~~~~l 200 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIR-AIREAAP-DARLRVDANQ--------GWTPEEA-VELLREL 200 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHH-HHHHhCC-CCeEEEeCCC--------CcCHHHH-HHHHHHH
Confidence 456677788888999999998642 211 1223333 3333222 5566666542 2344332 3344455
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhH
Q 019368 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEI 191 (342)
Q Consensus 114 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~ 191 (342)
+.++ +.++-.|-+. +-++.+.+|++...|. ..|=+-++.+.++++++....+++|+..+.+-.- .-.++
T Consensus 201 ~~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~ 271 (316)
T cd03319 201 AELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRI 271 (316)
T ss_pred HhcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHH
Confidence 5554 4444444332 2366677888877676 3455668899999999999999999987765321 13588
Q ss_pred HHHHHHhCCeEEecccccc
Q 019368 192 VPTCRELGIGIVAYGPLGQ 210 (342)
Q Consensus 192 ~~~~~~~gi~v~a~~pl~~ 210 (342)
..+|+++|+.++..+-+..
T Consensus 272 ~~~a~~~gi~~~~~~~~~~ 290 (316)
T cd03319 272 ADLARAAGLKVMVGCMVES 290 (316)
T ss_pred HHHHHHcCCCEEEECchhh
Confidence 9999999999998755544
No 20
>PRK08392 hypothetical protein; Provisional
Probab=91.09 E-value=8.4 Score=33.71 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCC---cHHHHHHHH--hcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHH
Q 019368 38 PDMIALIHHAINSGITLLDTSDIYGPY---TNEILVGKA--LKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (342)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g---~sE~~lG~a--l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~S 112 (342)
....++++.|.+.|++.|=.++|.-.. .-+..+-+. ++...+=++.+-.-++.. ++. ....++.
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~----------~~~-~~~~~~~ 82 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANIT----------PNG-VDITDDF 82 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeec----------CCc-chhHHHH
Confidence 346788999999999998776665211 112222222 121111122222222221 111 1223334
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCC-------Cc-HHHHHHHHh---cCCcceeccccc
Q 019368 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-------AC-AATIRRAHA---VHPITAVQLEWS 181 (342)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~-------~~-~~~l~~~~~---~~~~~~~q~~~~ 181 (342)
++. .||+ +.-+|........++.++.+.++.+.+.+.-+|=-. .. ...++++++ ... ..+++|
T Consensus 83 ~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g---~~lEiN 156 (215)
T PRK08392 83 AKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG---KAFEIS 156 (215)
T ss_pred Hhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC---CEEEEe
Confidence 443 4665 677894333334567888999999999877665311 11 123333322 222 122222
Q ss_pred cCCcchhhhHHHHHHHhCCeEEe
Q 019368 182 LWSRDVEAEIVPTCRELGIGIVA 204 (342)
Q Consensus 182 ~~~~~~~~~~~~~~~~~gi~v~a 204 (342)
...+.+...+++.|++.|+.++.
T Consensus 157 t~~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 157 SRYRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred CCCCCCCHHHHHHHHHcCCEEEE
Confidence 22223345789999999976543
No 21
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=84.71 E-value=36 Score=32.11 Aligned_cols=151 Identities=14% Similarity=0.117 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHcCCCeEeCC--CCCCC----CcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHH
Q 019368 37 EPDMIALIHHAINSGITLLDTS--DIYGP----YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (342)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DTA--~~Yg~----g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (342)
.++..+.++.+.+.|++.|-.- ..|.. -...+.+ +++++.-.+++.|...... .++.+...
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~--------~~~~~~a~---- 206 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDANG--------RWDLAEAI---- 206 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECCC--------CCCHHHHH----
Confidence 5667777888889999988753 22310 0012222 2333322345555555421 33444432
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hh
Q 019368 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VE 188 (342)
Q Consensus 111 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~ 188 (342)
+-+++|. ..++.++..|-+. +.++.+.++++.-.+. ..|=|.++++.+.++++....+++|+.....-.- ..
T Consensus 207 ~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~ 280 (357)
T cd03316 207 RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEA 280 (357)
T ss_pred HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 3333332 2355667766443 2466677777775555 3445567899999999988899999987765321 13
Q ss_pred hhHHHHHHHhCCeEEecc
Q 019368 189 AEIVPTCRELGIGIVAYG 206 (342)
Q Consensus 189 ~~~~~~~~~~gi~v~a~~ 206 (342)
.++.+.|+++|+.++..+
T Consensus 281 ~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 281 KKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHcCCeEeccC
Confidence 589999999999988765
No 22
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=84.49 E-value=2.8 Score=39.79 Aligned_cols=211 Identities=19% Similarity=0.109 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHH---HHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVG---KALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG---~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~S 112 (342)
+.++..+.|+.|.++|++.+=|+=+...+..+..+. +.++..+...+.|..=+.+..-. ....+.+.+ ..
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~--~lg~~~~dl-----~~ 84 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK--KLGISYDDL-----SF 84 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH--TTT-BTTBT-----HH
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH--HcCCCHHHH-----HH
Confidence 577889999999999999999998775433332222 22222244455555544332000 001111111 23
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCC-cceeccccccCCcc-----
Q 019368 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHP-ITAVQLEWSLWSRD----- 186 (342)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~----- 186 (342)
++.||++. +=| |..... +.+.+|-++|.--.+=.|+.+.+.+..+.+... +.-+..-.|...+.
T Consensus 85 ~~~lGi~~---lRl---D~Gf~~----~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs 154 (357)
T PF05913_consen 85 FKELGIDG---LRL---DYGFSG----EEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLS 154 (357)
T ss_dssp HHHHT-SE---EEE---SSS-SC----HHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-
T ss_pred HHHcCCCE---EEE---CCCCCH----HHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCC
Confidence 45566432 222 222222 223344444665556667877788888877643 44444444443332
Q ss_pred --hhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHH
Q 019368 187 --VEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQL 264 (342)
Q Consensus 187 --~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~ 264 (342)
.-.+.-.+.++.||.+.|+-|-..+ .. |+ -...+|. .+++.--+..+
T Consensus 155 ~~~f~~~n~~~k~~gi~~~AFI~g~~~-~r-GP-l~~GLPT----------------------------lE~hR~~~p~~ 203 (357)
T PF05913_consen 155 EEFFIEKNQLLKEYGIKTAAFIPGDEN-KR-GP-LYEGLPT----------------------------LEKHRNLPPYA 203 (357)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--SSS--B-TT-T-S--BS----------------------------BGGGTTS-HHH
T ss_pred HHHHHHHHHHHHHCCCcEEEEecCCCc-cc-CC-ccCCCCc----------------------------cHHHcCCCHHH
Confidence 1124556778999999998775532 11 22 0001111 01222234445
Q ss_pred HHHHHHhcCCCeeeccCCC--CHHHHHHHHhh
Q 019368 265 ALAWVHHQGDDVCPIPGTT--KIEQLNENIQA 294 (342)
Q Consensus 265 al~~~l~~~~v~~vi~g~~--~~~~l~~~l~a 294 (342)
|.+.+...+.|.-|++|-. +.+.+++....
T Consensus 204 aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 204 AALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 7778888888899999876 55666665555
No 23
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=83.30 E-value=16 Score=34.12 Aligned_cols=136 Identities=10% Similarity=0.010 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---CC-----CCCCC----cHHHHHHHHhcCC---CCCCEEEEeeeccccCCCCCCCC
Q 019368 36 PEPDMIALIHHAINSGITLLDT---SD-----IYGPY----TNEILVGKALKGG---MRERVELATKFGISFADGGKIRG 100 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DT---A~-----~Yg~g----~sE~~lG~al~~~---~R~~~~I~tK~~~~~~~~~~~~~ 100 (342)
+.++..+....+.+.|+..||- ++ .||.| ..-+.+.+.++.. -..++-|+.|+...+ +
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~------~- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW------D- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC------C-
Confidence 4566777777888899999992 22 36655 3345566665542 122477899976542 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHH---HHHHHHHHHHcCCccEEecCC-CcHHHHHHHHhcCCccee
Q 019368 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEV---TIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAV 176 (342)
Q Consensus 101 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~---~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~ 176 (342)
+.+. ...+-+.++..| +|.+.+|.-........ -|+...++++.-.|.-||... .++++.+++++....+.+
T Consensus 146 ~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgV 221 (312)
T PRK10550 146 SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAV 221 (312)
T ss_pred CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEE
Confidence 1122 235666677777 57778896433221111 367788888877777788776 478888888877777877
Q ss_pred cccccc
Q 019368 177 QLEWSL 182 (342)
Q Consensus 177 q~~~~~ 182 (342)
++-=..
T Consensus 222 miGRg~ 227 (312)
T PRK10550 222 MIGRGA 227 (312)
T ss_pred EEcHHh
Confidence 764433
No 24
>PRK07945 hypothetical protein; Provisional
Probab=81.69 E-value=38 Score=31.94 Aligned_cols=153 Identities=15% Similarity=0.076 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCC-----CcHHHHHHHHh------cCCCCCCEEEEeeeccccCCCCCCCCCHHHH
Q 019368 37 EPDMIALIHHAINSGITLLDTSDIYGP-----YTNEILVGKAL------KGGMRERVELATKFGISFADGGKIRGDPAYV 105 (342)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~-----g~sE~~lG~al------~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i 105 (342)
.....+++++|.+.|+..+=.++|.-. +.+..-+-..+ +..-.+ |-.+.|.-.. ...+...+..
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~---I~Il~GiE~d--~~~~g~~~~~ 184 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP---FRILTGIEVD--ILDDGSLDQE 184 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC---ceEEEEeEec--ccCCCCcchh
Confidence 345788999999999998777666421 11222222222 221122 2223332210 0011122222
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCC---------------CcHHHHHHHHhc
Q 019368 106 RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE---------------ACAATIRRAHAV 170 (342)
Q Consensus 106 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---------------~~~~~l~~~~~~ 170 (342)
++.|+. .||+ +.-+|+... .+.++..+.+.++.+.+.+.-+|=-. +....+.+++..
T Consensus 185 ----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e 256 (335)
T PRK07945 185 ----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACRE 256 (335)
T ss_pred ----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHH
Confidence 333333 4665 778898643 33466778888888888877777321 111223333332
Q ss_pred CCcceeccccccCCcchhhhHHHHHHHhCCeEE
Q 019368 171 HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIV 203 (342)
Q Consensus 171 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 203 (342)
.. ..+.++-+.+...+...++..|++.|+.++
T Consensus 257 ~g-~~lEINt~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 257 HG-TAVEINSRPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred hC-CEEEEeCCCCCCCChHHHHHHHHHcCCeEE
Confidence 22 111121222222234578888888888753
No 25
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=80.10 E-value=13 Score=32.06 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=71.7
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhc--CCcceeccccccCCcc
Q 019368 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRD 186 (342)
Q Consensus 109 ~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~ 186 (342)
+++.|....-+.+|.+.+..-- .......+.|+++.+-|+---|++.||..+.....+-. .-|..-.++|+..+..
T Consensus 64 ld~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 4555666666677777665431 12334456688888999988899999988886654442 3456667777766532
Q ss_pred -----hhhhHHHHHHHhCCeEEecccccccc
Q 019368 187 -----VEAEIVPTCRELGIGIVAYGPLGQGF 212 (342)
Q Consensus 187 -----~~~~~~~~~~~~gi~v~a~~pl~~G~ 212 (342)
.-.+..++|++.|+.+.-..++.++.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 12588999999999999999988764
No 26
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=77.31 E-value=17 Score=32.57 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CccEEecCCCcHHHHHHHHhcCCcceec
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEACAATIRRAHAVHPITAVQ 177 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q 177 (342)
.++.+...+ +-+.|..+|+++|.+-..-.+...-..++.++.++.+++.+ .++...++......++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 456665544 45558889998888876655422222345788888888888 5676677765566666666653 56666
Q ss_pred cccccCC--------cc------hhhhHHHHHHHhCCeEEecc
Q 019368 178 LEWSLWS--------RD------VEAEIVPTCRELGIGIVAYG 206 (342)
Q Consensus 178 ~~~~~~~--------~~------~~~~~~~~~~~~gi~v~a~~ 206 (342)
+.+...+ +. .-...++++++.|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6555441 11 11367888899998766543
No 27
>PRK08609 hypothetical protein; Provisional
Probab=76.28 E-value=91 Score=31.74 Aligned_cols=149 Identities=14% Similarity=0.104 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCC-----CCcHHHHHHHH------hcC-CCCCCEEEEeeeccccCCCCCCCCCHHHHHH
Q 019368 40 MIALIHHAINSGITLLDTSDIYG-----PYTNEILVGKA------LKG-GMRERVELATKFGISFADGGKIRGDPAYVRA 107 (342)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DTA~~Yg-----~g~sE~~lG~a------l~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~ 107 (342)
..++++.|.+.|+..|=.++|+. .|.+...+-.. ++. ...=++++-.-+.... +... .
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~------~g~~----d 420 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP------DGSL----D 420 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC------Ccch----h
Confidence 56699999999999998888862 22233322222 222 1111233333333221 1111 2
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCC---------Cc--HHHHHHHHhcCCccee
Q 019368 108 CCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE---------AC--AATIRRAHAVHPITAV 176 (342)
Q Consensus 108 ~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---------~~--~~~l~~~~~~~~~~~~ 176 (342)
-.+..|+. .||+ +.-+|++- ..+.+++++.+.++.+.|.+.-||=-. +. .+.+.+++.... .++
T Consensus 421 ~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~l 495 (570)
T PRK08609 421 YDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TAL 495 (570)
T ss_pred hcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CEE
Confidence 22334444 4665 77889753 345677889999999999887765332 11 122333322233 445
Q ss_pred ccccccCCcchhhhHHHHHHHhCCeEE
Q 019368 177 QLEWSLWSRDVEAEIVPTCRELGIGIV 203 (342)
Q Consensus 177 q~~~~~~~~~~~~~~~~~~~~~gi~v~ 203 (342)
|++-+.+.......++..|.+.|+.+.
T Consensus 496 EINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 496 ELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEcCCccccCccHHHHHHHHHcCCEEE
Confidence 555554433334678899999998643
No 28
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.21 E-value=14 Score=35.58 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcC
Q 019368 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (342)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg 117 (342)
.....++++|++.|++++|||.+.-. ..-+.... .+..+.+..-+|..+ ..+--......++--. .
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~a---~~Agit~v~~~G~dP------Gi~nv~a~~a~~~~~~--~ 144 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---PWKLDEEA---KKAGITAVLGCGFDP------GITNVLAAYAAKELFD--E 144 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---hhhhhHHH---HHcCeEEEcccCcCc------chHHHHHHHHHHHhhc--c
Confidence 45568999999999999999997753 22222222 344566666677553 2322222222222222 5
Q ss_pred CCcccEEEeecCCCC
Q 019368 118 IDCIDLYYQHRVDTK 132 (342)
Q Consensus 118 ~d~iDl~~lH~p~~~ 132 (342)
+++||+|..+-|+..
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 899999999998776
No 29
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=75.59 E-value=8 Score=33.75 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=47.0
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCcHHHHHHHHhcCCcceeccccc
Q 019368 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (342)
Q Consensus 112 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 181 (342)
.+..+|.||+-+.+........+.+.+ ..+.+.. .+.++.+||. |.+++.+.++++..+++++|++-.
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 456699999998754433333334433 3333322 2568889996 779999999999999999999653
No 30
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=74.90 E-value=53 Score=29.81 Aligned_cols=112 Identities=10% Similarity=-0.009 Sum_probs=64.1
Q ss_pred cceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCC-CCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCC
Q 019368 19 AQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTS-DIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGK 97 (342)
Q Consensus 19 ~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA-~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~ 97 (342)
.||.+.|....+-|..-+++...+-..+.+....|.+.-= ..|.. .+++.+-+|.+. ..+++..+.|+......-..
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH~~~ 81 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAITHQRR 81 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEecccccchhh
Confidence 3566666654332332232222222334456667777753 34543 367777788886 88999999998654321100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC
Q 019368 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI 133 (342)
Q Consensus 98 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~ 133 (342)
....-..+.+.+.+-++.|| +.+..+++.-|-...
T Consensus 82 l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 82 LKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred hccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 01011344455555566777 589999999886654
No 31
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=73.26 E-value=75 Score=29.08 Aligned_cols=151 Identities=12% Similarity=0.135 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---CC-------CCCCCcHHHHHHHHhcCCCCC-CEEEEeeeccccCCCCCCCCCHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDT---SD-------IYGPYTNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAY 104 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DT---A~-------~Yg~g~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~ 104 (342)
+.++..+..+.+.+.|+..||. ++ .|+ .+.+.+-+.++..++. ++-|..|+.+.. +.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~----------~~ 167 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV----------TD 167 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc----------hh
Confidence 4567778888888899999985 22 233 2566666666653222 577889986431 12
Q ss_pred HHHHHHHHHHHcCCCcccEEE------eecCCC-------------CCCHHHHHHHHHHHHHcCCccEEecCCC-cHHHH
Q 019368 105 VRACCEASLKRLDIDCIDLYY------QHRVDT-------------KIPIEVTIGELKKLVEEGKIKYIGLSEA-CAATI 164 (342)
Q Consensus 105 i~~~~~~SL~~Lg~d~iDl~~------lH~p~~-------------~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l 164 (342)
+ ..+-+.++..|.|.|++.- +|.-.. .....-.++.+.++++.=.+.-||+... +++.+
T Consensus 168 ~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 168 I-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred H-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 2 2344567788987776531 111000 0001235677777777656888888885 78888
Q ss_pred HHHHhcCCcceeccccccCC-c----chhhhHHHHHHHhCC
Q 019368 165 RRAHAVHPITAVQLEWSLWS-R----DVEAEIVPTCRELGI 200 (342)
Q Consensus 165 ~~~~~~~~~~~~q~~~~~~~-~----~~~~~~~~~~~~~gi 200 (342)
.+++... -+.+|+-=.++. . ....++.++.+++|.
T Consensus 247 ~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 8888754 688876433332 1 122456666777764
No 32
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=71.79 E-value=46 Score=30.03 Aligned_cols=68 Identities=10% Similarity=0.011 Sum_probs=41.6
Q ss_pred HHHHHHHcCCccEEec-CCCcHHHHHHHHhcCCccee--ccccccCCcchhhhHHHHHHHhCCeEEeccccc
Q 019368 141 ELKKLVEEGKIKYIGL-SEACAATIRRAHAVHPITAV--QLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLG 209 (342)
Q Consensus 141 ~L~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~ 209 (342)
.|.+..++|+. -+|+ ...+...+.+++....+|++ -.+.++++...-..++..|+..|+..+..-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 35555566874 4554 33333455565565555555 456667666544577888888898888776533
No 33
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=69.81 E-value=93 Score=28.73 Aligned_cols=181 Identities=14% Similarity=0.079 Sum_probs=87.8
Q ss_pred ceeccccccCcCCCCCCHHHHHHHHHHHH-HcCCCeEeCCCCCCCC---cHHHHHHHHhcCC--CCCCEEEEeeeccccC
Q 019368 20 QGLGCMAMSCLYGPPEPEPDMIALIHHAI-NSGITLLDTSDIYGPY---TNEILVGKALKGG--MRERVELATKFGISFA 93 (342)
Q Consensus 20 lglGt~~~g~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DTA~~Yg~g---~sE~~lG~al~~~--~R~~~~I~tK~~~~~~ 93 (342)
|.||.+.-+.......+.++..+.+...+ ..|++.||----|+.- .+-..+-++|+.+ .+..+.|+.-++..+
T Consensus 72 iS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p- 150 (294)
T cd06543 72 VSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLP- 150 (294)
T ss_pred EEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCC-
Confidence 46676653211112224455455555555 5699999965444321 1224556666553 333566666655432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCC--CcccEEEeecCCC--CCC-HHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHH
Q 019368 94 DGGKIRGDPAYVRACCEASLKRLDI--DCIDLYYQHRVDT--KIP-IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (342)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~SL~~Lg~--d~iDl~~lH~p~~--~~~-~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~ 168 (342)
..+..+.+ .+-++.+.-|+ |+|.++-...-.. ... -+.+..+.+.++.+=+--+=+. +..++-..+
T Consensus 151 ----~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~~---s~~~~~~~i 221 (294)
T cd06543 151 ----TGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPKL---SDAELWAMI 221 (294)
T ss_pred ----CCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccCC---CHHHHHHHc
Confidence 13333322 24444455553 4555554433222 122 3455666666665522222122 222222222
Q ss_pred hcCCcceeccccc--cCCcchhhhHHHHHHHhCCeEEeccccccc
Q 019368 169 AVHPITAVQLEWS--LWSRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (342)
Q Consensus 169 ~~~~~~~~q~~~~--~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G 211 (342)
...| -+=++... .+....-..+.+|++++||+.++|+.+.+-
T Consensus 222 g~Tp-MiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 222 GVTP-MIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred cccc-cccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 2221 11111111 222222368999999999999999888764
No 34
>PRK13796 GTPase YqeH; Provisional
Probab=68.51 E-value=1.1e+02 Score=29.12 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHcC---CCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHH
Q 019368 35 EPEPDMIALIHHAINSG---ITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~G---i~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (342)
.+.++..++++..-+.- +-.+|..+.-+. -...+.+.+. .+.-++|.+|.-... .....+.+.+-++.
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl~-----~~~~~~~i~~~l~~ 124 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLLP-----KSVKKNKVKNWLRQ 124 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhCC-----CccCHHHHHHHHHH
Confidence 35666777777776544 456887665442 2344444443 456688999975432 12235566666666
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHH
Q 019368 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRR 166 (342)
Q Consensus 112 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~ 166 (342)
..+.+|....|++++-.-. ...++++++.+.+..+.+.+--+|.+|..-..|--
T Consensus 125 ~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN 178 (365)
T PRK13796 125 EAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLIN 178 (365)
T ss_pred HHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHH
Confidence 6777776555777765543 34578889998888777788899999997766543
No 35
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=67.58 E-value=74 Score=28.10 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=70.9
Q ss_pred CCeEeC-CCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCC
Q 019368 52 ITLLDT-SDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVD 130 (342)
Q Consensus 52 i~~~DT-A~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~ 130 (342)
.+.++. +..|+. -+++.+.+|.+. -.+++..+.|+..............+.+.+.+-+.++.|| +.+..+++.-|-
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~Pp 95 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPILFQFPP 95 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE--T
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEEEEEcCC
Confidence 555554 456654 367889999888 5688999999875432111111235666466666999999 899999999887
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCcceeccccccCCcchhhhHHHHHHHhCCeEEe
Q 019368 131 TKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 204 (342)
Q Consensus 131 ~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 204 (342)
....-.+.++.|..+.+.-. .....++.++-.-+. ..+++++++++|+..+.
T Consensus 96 sf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~~v~ 147 (230)
T PF01904_consen 96 SFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVALVI 147 (230)
T ss_dssp T--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-EEEE
T ss_pred CcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCEEEE
Confidence 64445666666666665522 011122223222122 35789999999988765
No 36
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=67.52 E-value=29 Score=30.49 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=62.3
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHHHHh
Q 019368 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCREL 198 (342)
Q Consensus 121 iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~ 198 (342)
.++.++-.|-+.. -++.+.+|.+...+. ..+=|.++...+.+++.....+++|+..+..-.- .-.++.++|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 5677777765433 355667777777665 3455667888888888888899999988765431 125889999999
Q ss_pred CCeEEeccccccc
Q 019368 199 GIGIVAYGPLGQG 211 (342)
Q Consensus 199 gi~v~a~~pl~~G 211 (342)
|+.++..+.+..+
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776544
No 37
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=67.50 E-value=52 Score=28.35 Aligned_cols=146 Identities=10% Similarity=-0.019 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC----CCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (342)
+.+++.++++.+++.|++..|.- +..+..+++. ..+++++++-= ....+.++..+..
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~-----------~~a~~~~~~~l~~ 70 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV-----------MMSADAMLAGIKV 70 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH-----------HHHHHHHHHHHHH
Confidence 67889999999999998766532 3444444443 13334433111 1234445555554
Q ss_pred HHHHcCCC----cccEEEeecCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCcHHHHHHHHhcCCcceeccccccCCcc
Q 019368 112 SLKRLDID----CIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD 186 (342)
Q Consensus 112 SL~~Lg~d----~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 186 (342)
....+... .---+++-.+..+..--...-.-.-++.+|. |.++|. +-+.+.+.+.+....++++.+.+......
T Consensus 71 l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~~~ 149 (197)
T TIGR02370 71 LTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTTTM 149 (197)
T ss_pred HHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccccCH
Confidence 44444321 1112344444333322233333334566776 677885 55778888888888889988877654432
Q ss_pred h-hhhHHHHHHHhCCe
Q 019368 187 V-EAEIVPTCRELGIG 201 (342)
Q Consensus 187 ~-~~~~~~~~~~~gi~ 201 (342)
. -.++++.+++.|..
T Consensus 150 ~~~~~~i~~l~~~~~~ 165 (197)
T TIGR02370 150 YGQKDINDKLKEEGYR 165 (197)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 2 25788888888653
No 38
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=67.08 E-value=30 Score=32.91 Aligned_cols=71 Identities=10% Similarity=-0.027 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHHHHhCCeEEecccc
Q 019368 138 TIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPL 208 (342)
Q Consensus 138 ~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl 208 (342)
-++.+.+|++...+. ..|=|-++...++.++....++++|+.....-.- ...++.+.|+++|+.++.++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 366777788887665 6677778999999999988899999988764321 1358999999999999876443
No 39
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=67.04 E-value=14 Score=32.21 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=45.5
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCcHHHHHHHHhcCCcceeccccc
Q 019368 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (342)
Q Consensus 112 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 181 (342)
.+..+|.|++-+.+........+.+ ..+.+.+.. .+.+..+||. |-+++.+.++++...++++|++-+
T Consensus 18 ~~~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 18 AAAELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 3456899999987433322223333 333333322 3568899987 568899999999999999999653
No 40
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=66.66 E-value=3.4 Score=38.98 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=38.3
Q ss_pred cCCccEEecCCCcHHHHHHHHhcCC-cceeccccccCCcchhhhHHHHHHHhCCe
Q 019368 148 EGKIKYIGLSEACAATIRRAHAVHP-ITAVQLEWSLWSRDVEAEIVPTCRELGIG 201 (342)
Q Consensus 148 ~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 201 (342)
-|+||++||-=++++++.++..... -+..+.+..++-.-.+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999988876522 33344444443333356788888888886
No 41
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=66.28 E-value=1.1e+02 Score=28.38 Aligned_cols=151 Identities=14% Similarity=0.115 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCC----cHHHHHHHHhcCC-CCCCEEEEeeeccccCCCCCCCCCHHHHHHHH
Q 019368 35 EPEPDMIALIHHAINSGITLLDTSDIYGPY----TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDPAYVRACC 109 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g----~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (342)
.+.++..++++.+.+.|++.|.-.. |.- .-.+++-. +++. .-..+.|+|-... +.+ .
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~-i~~~~~~~~i~itTNG~l--------------l~~-~ 110 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAA-LAALPGIRDLALTTNGYL--------------LAR-R 110 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHH-HHhcCCCceEEEEcCchh--------------HHH-H
Confidence 4678899999999999998776432 110 12222222 3321 1235666655321 111 1
Q ss_pred HHHHHHcCCCcccEEEeecCCC--------CCCHHHHHHHHHHHHHcCC----ccEEecCCCcHHHHHHHHh---cCCcc
Q 019368 110 EASLKRLDIDCIDLYYQHRVDT--------KIPIEVTIGELKKLVEEGK----IKYIGLSEACAATIRRAHA---VHPIT 174 (342)
Q Consensus 110 ~~SL~~Lg~d~iDl~~lH~p~~--------~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~---~~~~~ 174 (342)
-..|...|++.+- +-||..++ ...+++++++++.+++.|. |..+.+.+.+.+++.++++ ..++.
T Consensus 111 ~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 111 AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCe
Confidence 2345555655442 33444432 2357889999999999986 2234333444455544433 34455
Q ss_pred eeccccccCCcc---------hhhhHHHHHHHhCCeEEe
Q 019368 175 AVQLEWSLWSRD---------VEAEIVPTCRELGIGIVA 204 (342)
Q Consensus 175 ~~q~~~~~~~~~---------~~~~~~~~~~~~gi~v~a 204 (342)
+.-++|.++... ...++++..++.|+.+..
T Consensus 190 v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 190 LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 444555543321 123677777777655433
No 42
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=65.17 E-value=63 Score=28.38 Aligned_cols=161 Identities=15% Similarity=0.145 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC-CCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHH
Q 019368 35 EPEPDMIALIHHAINSGITLLDTS-DIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA-~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL 113 (342)
.+.++..++++...+.||..|++. +..+. ...+.+.+..+..+...+ ++-+. ...+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~--~~~~~----------~~~~~i~~~~~~~- 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARL--QALCR----------ANEEDIERAVEAA- 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEE--EEEEE----------SCHHHHHHHHHHH-
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhccccc--ceeee----------ehHHHHHHHHHhh-
Confidence 367888999999899999999999 33331 123344444433233222 22221 2456666666543
Q ss_pred HHcCCCcccEEEeecC---------CCCCCHHHHHHHHHHHHHcCCccEEecCC---CcHHHHHHHHhc---CCcceecc
Q 019368 114 KRLDIDCIDLYYQHRV---------DTKIPIEVTIGELKKLVEEGKIKYIGLSE---ACAATIRRAHAV---HPITAVQL 178 (342)
Q Consensus 114 ~~Lg~d~iDl~~lH~p---------~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~~~~---~~~~~~q~ 178 (342)
...|.+.+.++.-=++ +....++.+.+.++.+++.|..-.+++-. ++++.+.++.+. .+++.+.+
T Consensus 77 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l 156 (237)
T PF00682_consen 77 KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYL 156 (237)
T ss_dssp HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEE
T ss_pred HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEe
Confidence 4678777666542221 00011345667777778888877888643 566665554443 24455544
Q ss_pred ccc--cCCcchhhhHHHHHHHh----CCeEEeccccc
Q 019368 179 EWS--LWSRDVEAEIVPTCREL----GIGIVAYGPLG 209 (342)
Q Consensus 179 ~~~--~~~~~~~~~~~~~~~~~----gi~v~a~~pl~ 209 (342)
.=+ ...+..-.+++...+++ .+++.++.-++
T Consensus 157 ~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 157 ADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp EETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred eCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 322 22222123566655543 25555555544
No 43
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=64.69 E-value=1.1e+02 Score=27.53 Aligned_cols=157 Identities=14% Similarity=0.134 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~ 115 (342)
+.++..+.++.+.+.|++.|-.--.-.. ..+.-.=+++++.-.+++.|...... .++.+...+ +-+.|+.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~~~~l~vDan~--------~~~~~~a~~-~~~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGDDAELRVDANR--------GWTPKQAIR-ALRALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCCCCEEEEeCCC--------CcCHHHHHH-HHHHHHh
Confidence 3456677788888999998875321110 11112223344323334444444321 334444322 2234444
Q ss_pred cCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCc-chhhhHHH
Q 019368 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVP 193 (342)
Q Consensus 116 Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~ 193 (342)
+ ++.++..|-+. +-++.+.++++.-.+. ..|=+-++...+.++++....+++|+..+..-. ....++.+
T Consensus 155 ~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~ 225 (265)
T cd03315 155 L-----GLDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLA 225 (265)
T ss_pred c-----CCCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHH
Confidence 4 45556666432 2356677777776555 445566788999999988889999998776543 12358899
Q ss_pred HHHHhCCeEEeccccccc
Q 019368 194 TCRELGIGIVAYGPLGQG 211 (342)
Q Consensus 194 ~~~~~gi~v~a~~pl~~G 211 (342)
.|+++|+.++..+.+..+
T Consensus 226 ~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 226 VAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHcCCcEEecCccchH
Confidence 999999999987665543
No 44
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=64.66 E-value=38 Score=29.59 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=53.6
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-ccEEecC-CCcHHHHHHHHhcCCcceeccccccCCcchhhh
Q 019368 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLS-EACAATIRRAHAVHPITAVQLEWSLWSRDVEAE 190 (342)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 190 (342)
...+|.||+-+.+.-........+ ...++.+.-. ++.+||. |.+.+.+.++++..+++.+|++-.. +.+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~----~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPE----QAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHH----HHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHH
Confidence 456888998776655322233333 3333333333 7899987 5688899999999999999996552 245
Q ss_pred HHHHHHHhC-CeEEe
Q 019368 191 IVPTCRELG-IGIVA 204 (342)
Q Consensus 191 ~~~~~~~~g-i~v~a 204 (342)
.++..++.. +.++-
T Consensus 89 ~~~~l~~~~~~~v~k 103 (208)
T COG0135 89 YIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHHHhhcCCceEE
Confidence 666666554 55543
No 45
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=64.56 E-value=1.1e+02 Score=27.67 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCcceecccc
Q 019368 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEW 180 (342)
Q Consensus 101 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~ 180 (342)
+.+.+.+..++. ..-|.|.||+-.- +......+.+...++.+++.-.+ -|-+-++.++.++.+++..+=..+-+..
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 344454443333 3568999999753 22222244455566666554222 4788899999999999872212233344
Q ss_pred ccCCcchhhhHHHHHHHhCCeEEecc
Q 019368 181 SLWSRDVEAEIVPTCRELGIGIVAYG 206 (342)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~gi~v~a~~ 206 (342)
+..... ..++++.++++|..++...
T Consensus 99 s~~~~~-~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 99 SAEGEK-LEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred CCCCcc-CHHHHHHHHHhCCCEEEEe
Confidence 433211 3478999999999988753
No 46
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=64.33 E-value=89 Score=26.89 Aligned_cols=145 Identities=14% Similarity=0.043 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC----CCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (342)
+..++.+++..+++.|+...|. | +..+..+++. ..+++++++-= ....+.++..+..
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i---~-----~~~l~p~m~~vG~~w~~~~i~va~e-----------~~as~~~~~~l~~ 69 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI---I-----EEGLAPGMDIVGDKYEEGEIFVPEL-----------LMAADAMKAGLDL 69 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H-----HHHHHHHHHHHHHHHccCCeeHHHH-----------HHHHHHHHHHHHH
Confidence 6788999999999999754442 2 3444444443 13444443211 2223334444444
Q ss_pred HHHHcCCCc---ccEEEeecCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCcHHHHHHHHhcCCcceeccccccCCcch
Q 019368 112 SLKRLDIDC---IDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDV 187 (342)
Q Consensus 112 SL~~Lg~d~---iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~ 187 (342)
-...+.... ---+++-.+..+..--...-.-.-++..|. |.++| .+.+.+.+.+.+....++++-+.++......
T Consensus 70 l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~ 148 (201)
T cd02070 70 LKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTMG 148 (201)
T ss_pred HHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHH
Confidence 444443222 123444444433332223333335567787 56778 5668888888888888888888776544321
Q ss_pred -hhhHHHHHHHhCC
Q 019368 188 -EAEIVPTCRELGI 200 (342)
Q Consensus 188 -~~~~~~~~~~~gi 200 (342)
-.++++.+++.+.
T Consensus 149 ~~~~~i~~lr~~~~ 162 (201)
T cd02070 149 GMKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHHCCC
Confidence 2477888888754
No 47
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=63.10 E-value=1e+02 Score=28.12 Aligned_cols=65 Identities=12% Similarity=0.040 Sum_probs=39.2
Q ss_pred HHHHHHcCCccEEec-CCCcHHHHHHHHhcCCccee--ccccccCCcchhhhHHHHHHHhCCeEEeccc
Q 019368 142 LKKLVEEGKIKYIGL-SEACAATIRRAHAVHPITAV--QLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (342)
Q Consensus 142 L~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~p 207 (342)
|.+..++|+.- +|+ .......+.+++....||++ -.+.++++...-..++..++..|+..+..-|
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 55555667753 443 33333455555555455555 5567777765445677778888888777655
No 48
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=63.00 E-value=58 Score=31.51 Aligned_cols=83 Identities=7% Similarity=-0.011 Sum_probs=60.5
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHHHHhC
Q 019368 122 DLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCRELG 199 (342)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~g 199 (342)
++.++-.|-+. +.++.+.+|++.-.|. ..|=|-++...++++++...++++|+.....-.- ...++.++|+.+|
T Consensus 233 ~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~g 308 (404)
T PRK15072 233 RLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQ 308 (404)
T ss_pred CCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcC
Confidence 45555554332 2366777888876665 5677778999999999998899999987764321 1358999999999
Q ss_pred CeEEecccc
Q 019368 200 IGIVAYGPL 208 (342)
Q Consensus 200 i~v~a~~pl 208 (342)
+.++.++..
T Consensus 309 i~~~~h~~~ 317 (404)
T PRK15072 309 VRTGSHGPT 317 (404)
T ss_pred CceeeccCc
Confidence 999887554
No 49
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=62.91 E-value=17 Score=32.03 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=74.2
Q ss_pred HHHHHHHcCCCcccEEEeecCC-CCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCcceeccccccCCcch
Q 019368 109 CEASLKRLDIDCIDLYYQHRVD-TKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDV 187 (342)
Q Consensus 109 ~~~SL~~Lg~d~iDl~~lH~p~-~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~ 187 (342)
++..-+.||+. ++..--.. .+...++..++|..++-+|.+--==.|.+....++.+++.....+ |.|+....
T Consensus 51 ~~~~Ae~~gi~---l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~----~~PLWg~d 123 (223)
T COG2102 51 AELQAEAMGIP---LVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLKV----YAPLWGRD 123 (223)
T ss_pred HHHHHHhcCCc---eEEEecCccchhhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCEE----eecccCCC
Confidence 34444556654 33332222 223466777888887733332211135677778888888765443 45555544
Q ss_pred hhhHHHHHHHhCCeEEecccccccccCC--CCCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHH
Q 019368 188 EAEIVPTCRELGIGIVAYGPLGQGFLSS--GPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPA 262 (342)
Q Consensus 188 ~~~~~~~~~~~gi~v~a~~pl~~G~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~ 262 (342)
..+++...-+.|..++.-++-+.|+-.+ |+ . =..+.++.+..+.++||+.++
T Consensus 124 ~~ell~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr----~-------------------i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 124 PEELLEEMVEAGFEAIIVAVSAEGLDESWLGR----R-------------------IDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred HHHHHHHHHHcCCeEEEEEEeccCCChHHhCC----c-------------------cCHHHHHHHHHHHHhcCCCcc
Confidence 5688888889998888777777765320 11 0 012456788899999998764
No 50
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=61.89 E-value=1.2e+02 Score=27.29 Aligned_cols=100 Identities=20% Similarity=0.112 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eecCCCCC-CHH----HHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCc
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYY-QHRVDTKI-PIE----VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 173 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~-lH~p~~~~-~~~----~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 173 (342)
++.+.+.+..++.+ .-|.|.||+-. =-+|+... ..+ .+...++.+++.-.+. +.+-++.++.++++++...
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~- 97 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGA- 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCC-
Confidence 45555544444433 45889999853 33454331 222 3333456666553333 7888999999999998752
Q ss_pred ceeccccccCCcchhhhHHHHHHHhCCeEEec
Q 019368 174 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 174 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 205 (342)
+ +-+..+.... +.++++.++++|..++.+
T Consensus 98 ~-iINdisg~~~--~~~~~~l~~~~~~~vV~m 126 (257)
T cd00739 98 D-IINDVSGGSD--DPAMLEVAAEYGAPLVLM 126 (257)
T ss_pred C-EEEeCCCCCC--ChHHHHHHHHcCCCEEEE
Confidence 2 2333444332 257899999999999984
No 51
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=61.87 E-value=1.2e+02 Score=27.22 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eecCCCC-----CCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCc
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYY-QHRVDTK-----IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 173 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~-lH~p~~~-----~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 173 (342)
.+.+.+.+..++.+ .-|-|.||+-- --+|+.. ...+.+...++.+++.-.+ -|.+-++.++.++++++...
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 35666655554443 56899999963 3445431 1123455666666655233 38899999999999998762
Q ss_pred ceeccccccCCcchhhhHHHHHHHhCCeEEeccc
Q 019368 174 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (342)
Q Consensus 174 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~p 207 (342)
.+-+..+.... +.++++.++++|..++.+..
T Consensus 98 -~iINdis~~~~--~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 98 -DIINDVSGGRG--DPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred -CEEEeCCCCCC--ChHHHHHHHHcCCCEEEECc
Confidence 23334444332 25789999999998888643
No 52
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=61.47 E-value=1.3e+02 Score=27.55 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCcceec
Q 019368 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQ 177 (342)
Q Consensus 98 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 177 (342)
..++.+.. ..+-+.|.++|+++|.+-..+.|...-...+.++.+..+.+...++...+. .....++.+.+.. ++.+.
T Consensus 21 ~~~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~ 97 (287)
T PRK05692 21 RFIPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVA 97 (287)
T ss_pred CCcCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEE
Confidence 34555554 456777999999999997555554222222335555555444345555554 4677788877752 23333
Q ss_pred cccccCC--------cch------hhhHHHHHHHhCCeEEec
Q 019368 178 LEWSLWS--------RDV------EAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 178 ~~~~~~~--------~~~------~~~~~~~~~~~gi~v~a~ 205 (342)
+-++..+ ... -.+.+++++++|+.+.++
T Consensus 98 i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 98 VFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3222211 111 136889999999988643
No 53
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=61.25 E-value=89 Score=28.08 Aligned_cols=66 Identities=9% Similarity=-0.053 Sum_probs=39.0
Q ss_pred HHHHHHcCCccEEec-CCCcHHHHHHHHhcCCccee--ccccccCCcchhhhHHHHHHHhCCeEEecccc
Q 019368 142 LKKLVEEGKIKYIGL-SEACAATIRRAHAVHPITAV--QLEWSLWSRDVEAEIVPTCRELGIGIVAYGPL 208 (342)
Q Consensus 142 L~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl 208 (342)
|.+..++|+. .+|+ ++.+...+.+++....||++ -.+.++++...-..++..++..|+..+..-|-
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 3444455764 3453 33444455555555555555 45666766644456777788888887776553
No 54
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=60.02 E-value=65 Score=31.37 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee-cCCCC----------CC-HH---HHHHHH-HHHHHcCCccEEecCCCcH
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH-RVDTK----------IP-IE---VTIGEL-KKLVEEGKIKYIGLSEACA 161 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH-~p~~~----------~~-~~---~~~~~L-~~l~~~G~ir~iGvS~~~~ 161 (342)
..+.+.+.+.++..+ .|+.|+|.+|.+- -|... .+ .+ +.++.. +.|.+.|- +.||+|||..
T Consensus 200 ~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 457788877777765 4679999998654 33110 11 11 344444 44555566 9999999976
No 55
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=59.73 E-value=1.3e+02 Score=27.73 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=67.2
Q ss_pred HHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHcCCcc-EEecCCC---cHHHHHHHHhc-CCcceecccc
Q 019368 111 ASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEEGKIK-YIGLSEA---CAATIRRAHAV-HPITAVQLEW 180 (342)
Q Consensus 111 ~SL~~Lg~d~iDl~~lH~p~~-----~~~~~~~~~~L~~l~~~G~ir-~iGvS~~---~~~~l~~~~~~-~~~~~~q~~~ 180 (342)
+..++.| .|++.+|-... +.+.+|+.+.|+++.+.=+|- -||=|.. +++.|+++.+. ..=.|.....
T Consensus 158 k~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 3445666 68999997644 356889999999999987774 4677764 56778887775 2334444444
Q ss_pred ccCCcchhhhHHHHHHHhCCeEEecccccc
Q 019368 181 SLWSRDVEAEIVPTCRELGIGIVAYGPLGQ 210 (342)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~ 210 (342)
|+-.. -..+.+.+.++|=.|++|+++.-
T Consensus 235 nldlD--y~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 235 NLDLD--YERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred ccccC--HHHHHHHHHhcCceEEEeeccCh
Confidence 54222 25788999999999999998763
No 56
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.17 E-value=40 Score=30.07 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCccEEecCCCcHHH
Q 019368 135 IEVTIGELKKLVEEGKIKYIGLSEACAAT 163 (342)
Q Consensus 135 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 163 (342)
.+++.+.++..+.+ .--++|+.||-...
T Consensus 105 ~~e~~~rl~~a~~~-v~~~~GlnNhmGs~ 132 (250)
T COG2861 105 AEEILRRLRKAMNK-VPDAVGLNNHMGSR 132 (250)
T ss_pred HHHHHHHHHHHHhh-Cccceeehhhhhhh
Confidence 56888888888776 45678999986554
No 57
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=58.81 E-value=1.7e+02 Score=27.79 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=57.9
Q ss_pred CCCCEEEEeeecccc-----CC---CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeec-CCCCCCHHHHHHHHHHHHHc
Q 019368 78 MRERVELATKFGISF-----AD---GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTKIPIEVTIGELKKLVEE 148 (342)
Q Consensus 78 ~R~~~~I~tK~~~~~-----~~---~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~L~~l~~~ 148 (342)
.|-.++|+|.+|-.. .. +.....+++.|..++....+.++. .++-+.+-. =++....+.+.++++.+++.
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcc
Confidence 477788888776421 11 233467899999999988877752 356444444 34444567888999998875
Q ss_pred -CC-ccEEecCCC-cHHHHHHHHhc
Q 019368 149 -GK-IKYIGLSEA-CAATIRRAHAV 170 (342)
Q Consensus 149 -G~-ir~iGvS~~-~~~~l~~~~~~ 170 (342)
|. .|.|-||+. -+..++++.+.
T Consensus 178 ~~i~~r~itvST~G~~~~i~~L~~~ 202 (345)
T PRK14457 178 LGIGQRRITVSTVGVPKTIPQLAEL 202 (345)
T ss_pred cCCccCceEEECCCchhhHHHHHhh
Confidence 43 356666664 33445555443
No 58
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.71 E-value=95 Score=30.94 Aligned_cols=73 Identities=7% Similarity=0.055 Sum_probs=48.3
Q ss_pred eecCCCCCCHHHHHHHHHHHHHcCCccE----EecCCCcHHHHHHHHhc---CCcceeccccccCCcchhhhHHHHHHHh
Q 019368 126 QHRVDTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCREL 198 (342)
Q Consensus 126 lH~p~~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 198 (342)
+.........++..++++.+++.|..-. +|+-+.+.+.+++.++. .+++ ++.++.+...+...+.+.+++.
T Consensus 313 L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 313 LDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDR 390 (497)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhh
Confidence 3333444567788999999999997433 57777888877666554 3344 3444555555566788888877
Q ss_pred CC
Q 019368 199 GI 200 (342)
Q Consensus 199 gi 200 (342)
+.
T Consensus 391 ~~ 392 (497)
T TIGR02026 391 VE 392 (497)
T ss_pred cc
Confidence 64
No 59
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=57.99 E-value=68 Score=30.31 Aligned_cols=81 Identities=9% Similarity=0.033 Sum_probs=57.6
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCc-chhhhHHHHHHHhC
Q 019368 122 DLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 199 (342)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~g 199 (342)
++.++-.|-+. +-++.+.+|+++.-+. ..|=|.++...+..++....++++|......-. ....++.++|+++|
T Consensus 203 ~i~~iEeP~~~----~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~g 278 (352)
T cd03325 203 RLLFIEEPVLP----ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYD 278 (352)
T ss_pred CCcEEECCCCc----cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcC
Confidence 44455554332 2367778888776554 556677899999999888888999998765432 12358999999999
Q ss_pred CeEEecc
Q 019368 200 IGIVAYG 206 (342)
Q Consensus 200 i~v~a~~ 206 (342)
|.++.++
T Consensus 279 i~~~~h~ 285 (352)
T cd03325 279 VALAPHC 285 (352)
T ss_pred CcEeccC
Confidence 9988665
No 60
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=57.79 E-value=77 Score=30.78 Aligned_cols=86 Identities=13% Similarity=-0.004 Sum_probs=61.9
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHc------CCccEEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHH
Q 019368 122 DLYYQHRVDTKIPIEVTIGELKKLVEE------GKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPT 194 (342)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~ 194 (342)
++ ++-.|-+..+.++.++.+.+|+++ ..=-..+=|.++.+.+.++++..-.+++|+..+-+-.- ...++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 45 777776544434567777777765 22234466778899999999998899999988864332 13589999
Q ss_pred HHHhCCeEEecccc
Q 019368 195 CRELGIGIVAYGPL 208 (342)
Q Consensus 195 ~~~~gi~v~a~~pl 208 (342)
|+++||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987655
No 61
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=57.50 E-value=66 Score=30.01 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 019368 39 DMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI 118 (342)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~ 118 (342)
--+++|+.+-++|| .+|.|+. +++.+=+++.- .+..+|+|......--....+. -.++++...++=|+
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al~~h~RNl----~D~qlkaI~~~gGv 217 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARALVDHPRNL----SDEQLKAIAETGGV 217 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhccCCCCCC----CHHHHHHHHhcCCE
Confidence 46889999999999 9999987 56777777764 4455666665543221112233 33445555555554
Q ss_pred CcccEEEeecCC-----CCCCHHHHHHHHHHHHHcCCccEEecCC
Q 019368 119 DCIDLYYQHRVD-----TKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (342)
Q Consensus 119 d~iDl~~lH~p~-----~~~~~~~~~~~L~~l~~~G~ir~iGvS~ 158 (342)
|.+.++-... ...+++++.+.++.+++.+=++++|+.+
T Consensus 218 --Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 218 --IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred --EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 5554443322 3457899999999999999999999965
No 62
>PRK14017 galactonate dehydratase; Provisional
Probab=56.85 E-value=68 Score=30.68 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=59.4
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCc-chhhhHHHHHHHhC
Q 019368 122 DLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 199 (342)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~g 199 (342)
++.++-.|-+. +.++.+.+|.+...+. ..|=|.++...+..+++...++++|+..+..-. ..-.++.+.|+++|
T Consensus 204 ~~~~iEeP~~~----~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~g 279 (382)
T PRK14017 204 RPMFIEEPVLP----ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYD 279 (382)
T ss_pred CCCeEECCCCc----CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcC
Confidence 44445544332 2256777888877665 567777899999999998889999998776532 12358999999999
Q ss_pred CeEEeccc
Q 019368 200 IGIVAYGP 207 (342)
Q Consensus 200 i~v~a~~p 207 (342)
|.++.++.
T Consensus 280 i~~~~h~~ 287 (382)
T PRK14017 280 VALAPHCP 287 (382)
T ss_pred CeEeecCC
Confidence 99988754
No 63
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=56.43 E-value=65 Score=26.19 Aligned_cols=63 Identities=6% Similarity=0.169 Sum_probs=46.3
Q ss_pred CCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcC--CCcccEEEeecCCCCCCHHHHHHHHHHHHHc
Q 019368 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTKIPIEVTIGELKKLVEE 148 (342)
Q Consensus 78 ~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~ 148 (342)
.|=-+.|+-|+|. ...+..|++.+.++.+.+. ....|++++.......+..++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~--------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK--------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc--------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3445677777764 3467888888888887763 4568999999988777777777777776665
No 64
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=56.04 E-value=1e+02 Score=27.61 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=53.6
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCCCHH-HHHHHHHHHHHcCCccEEecCC-CcHHHHHHHHhcCCcceeccccccCCcc
Q 019368 109 CEASLKRLDIDCIDLYYQHRVDTKIPIE-VTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSLWSRD 186 (342)
Q Consensus 109 ~~~SL~~Lg~d~iDl~~lH~p~~~~~~~-~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 186 (342)
+-+-|+.+| +|.+.+|..+...... --++.+.++++.-.+.-|.... .+++.+.+++.....+.+.+---+....
T Consensus 160 ~~~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 344556677 4667777665532211 1245556666665566665554 4778888888876666654422222211
Q ss_pred -hhhhHHHHHHHhCCeE
Q 019368 187 -VEAEIVPTCRELGIGI 202 (342)
Q Consensus 187 -~~~~~~~~~~~~gi~v 202 (342)
.-.++.+.|+++||.+
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 1357889999999864
No 65
>PRK06361 hypothetical protein; Provisional
Probab=54.83 E-value=1.4e+02 Score=25.70 Aligned_cols=185 Identities=14% Similarity=0.086 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHH---H---HhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHH
Q 019368 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVG---K---ALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (342)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG---~---al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (342)
....++++.|.+.|+..|=-++|.....-...+- + .++....=+++...-+... ..+.+ ..+.+
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~---------~~~~~-~~~~~ 79 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTHV---------PPKLI-PKLAK 79 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEccc---------Cchhh-chHHH
Confidence 3477899999999999888777754211111111 1 1111112122333322211 12222 33345
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCC-cHHHHHHHHhcCCcceeccccccCCcchhhh
Q 019368 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLEWSLWSRDVEAE 190 (342)
Q Consensus 112 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 190 (342)
.+.+++ +|+..+|......+.. ...-.++.+.|.+.-+|=-.. ....+ +++....+. +.+......+.....
T Consensus 80 ~~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~-~~~~~~~~~-lEin~~~~~~~~~~~ 152 (212)
T PRK06361 80 KARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEA-ELAAENGVF-LEITARKGHSLTNGH 152 (212)
T ss_pred HHHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHH-HHHHHcCeE-EEEECCCCcccchHH
Confidence 555654 5777899543322211 111145778888766653222 22233 333332211 111111112223457
Q ss_pred HHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 019368 191 IVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWV 269 (342)
Q Consensus 191 ~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~ 269 (342)
+++++++.|+.++..|....- ......+.+..++++.|++..++--.+.
T Consensus 153 ~l~~a~~~gi~vv~~SDaH~~------------------------------~d~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 153 VARIAREAGAPLVINTDTHAP------------------------------SDLITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHHHhCCcEEEECCCCCH------------------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999998776554410 0111356788888899998888765444
No 66
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=54.56 E-value=2.1e+02 Score=27.61 Aligned_cols=150 Identities=12% Similarity=0.063 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCCCCCCCCc-HHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAIN-SGITLLDTSDIYGPYT-NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (342)
Q Consensus 36 ~~~~~~~~l~~A~~-~Gi~~~DTA~~Yg~g~-sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL 113 (342)
+.++..+.++++++ .|++.|=.--.-.+.. ..+.+- ++++.- .++.|..-... .++.+.. .+-+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~-avRea~-~~~~l~vDaN~--------~w~~~~A----~~~~ 233 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVK-ALAEAF-PGARLRLDPNG--------AWSLETA----IRLA 233 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHH-HHHHhC-CCCcEEEeCCC--------CcCHHHH----HHHH
Confidence 44556666667765 6998875322000101 112232 333312 13333333221 2344432 3334
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhH
Q 019368 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEI 191 (342)
Q Consensus 114 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~ 191 (342)
++|. - ++.++-.|-+ -++.+.+|++...+. ..|-|-++..++.++++...++++|......-.- .-.++
T Consensus 234 ~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ki 304 (395)
T cd03323 234 KELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRV 304 (395)
T ss_pred HhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHH
Confidence 4553 2 6667777653 477788888887665 5676778889999999988899999987764321 13589
Q ss_pred HHHHHHhCCeEEecccc
Q 019368 192 VPTCRELGIGIVAYGPL 208 (342)
Q Consensus 192 ~~~~~~~gi~v~a~~pl 208 (342)
.+.|+++|+.+..++..
T Consensus 305 a~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 305 AQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHcCCeEEEecCc
Confidence 99999999999887754
No 67
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=54.20 E-value=1.9e+02 Score=27.13 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCC----------------C--cHHHHHHHHhcCCCCCCEEEEeeeccccCCCCC
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGP----------------Y--TNEILVGKALKGGMRERVELATKFGISFADGGK 97 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~----------------g--~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~ 97 (342)
+.+...++.+.|=+.|+-+|=|--.+.. | ....+|-...+ ....+.++|=..
T Consensus 88 p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma-------- 157 (347)
T COG2089 88 PLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA-------- 157 (347)
T ss_pred CHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc--------
Confidence 5666778888898999977765433321 1 01223332222 223566665443
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHH-HHHHHHHHHcCCccEEecCCCcHHHHHHHHh
Q 019368 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVT-IGELKKLVEEGKIKYIGLSEACAATIRRAHA 169 (342)
Q Consensus 98 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~-~~~~~~-~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~ 169 (342)
+-+.|.++++..+++=. .|+.+||+.... .+.+++ +.+|-.|.+.= ---||+|.|+..-+..+..
T Consensus 158 ---~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~A 224 (347)
T COG2089 158 ---TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAA 224 (347)
T ss_pred ---cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHH
Confidence 45667776665544432 499999997665 455543 55666665552 4479999998775544433
No 68
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=54.14 E-value=21 Score=27.29 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=41.5
Q ss_pred CCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHHHHhCCeEEeccccccc
Q 019368 157 SEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQG 211 (342)
Q Consensus 157 S~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~G 211 (342)
|.++...++++++...++++|+.....-.- .-.++.++|+++|+.++..+. ..+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 567888999999998899999987654221 135899999999999999986 443
No 69
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=54.05 E-value=49 Score=31.40 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHHHHhCCeEEecccccc
Q 019368 138 TIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQ 210 (342)
Q Consensus 138 ~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~ 210 (342)
.++.+.+|.++..+. ..|=|-++...+..+++...++++|+.....-.- ...++..+|+++|+.++..+-+..
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 456677777776554 5566677888999988888889998877765321 135789999999999886544433
No 70
>COG0218 Predicted GTPase [General function prediction only]
Probab=53.72 E-value=1.5e+02 Score=25.73 Aligned_cols=100 Identities=12% Similarity=-0.053 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHH------cCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHH
Q 019368 38 PDMIALIHHAIN------SGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (342)
Q Consensus 38 ~~~~~~l~~A~~------~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (342)
++..+++...++ ..+-.+|.-+.--. .+..+=++|......-+++.||.- ........+.+..
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~~~i~~~vv~tK~D---------Ki~~~~~~k~l~~ 159 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLELGIPVIVVLTKAD---------KLKKSERNKQLNK 159 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHHcCCCeEEEEEccc---------cCChhHHHHHHHH
Confidence 344566666554 34667786554432 567788888887888899999984 3355667778888
Q ss_pred HHHHcCCCcccE--EEeecCCCCCCHHHHHHHHHHHHHc
Q 019368 112 SLKRLDIDCIDL--YYQHRVDTKIPIEVTIGELKKLVEE 148 (342)
Q Consensus 112 SL~~Lg~d~iDl--~~lH~p~~~~~~~~~~~~L~~l~~~ 148 (342)
..+.|+.+..|- +++........+++++..+.+....
T Consensus 160 v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 160 VAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 898998777665 5555555555688888888776543
No 71
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=53.70 E-value=91 Score=30.64 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeec
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHR 128 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~ 128 (342)
..+.+.+++.++..+ .|+.++|++|.+.-
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~ 254 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNL 254 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEecccc
Confidence 446777777766655 48888888887653
No 72
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=53.14 E-value=45 Score=31.72 Aligned_cols=74 Identities=12% Similarity=0.004 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHHHHhCCeEEeccccccc
Q 019368 138 TIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQG 211 (342)
Q Consensus 138 ~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~G 211 (342)
.++.+.+|++...+. ..|=|-++...+.+++.....+++|+.....-.- ...++...|+.+|+.++..+.+.++
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 356666777776554 6677778888898888888889999877764321 1357899999999998776544443
No 73
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=52.80 E-value=71 Score=32.80 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=48.2
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCcHHHHHHHHhcCCcceeccccc
Q 019368 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (342)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 181 (342)
...+|.|++-+.+..........+.+...+.+....-.++.+||- |-+++.+.++.+...++++|+.-.
T Consensus 19 a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 19 AVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 356899999998656544444455523333333333357789985 778999999999999999999754
No 74
>PLN00191 enolase
Probab=52.76 E-value=2.4e+02 Score=27.86 Aligned_cols=97 Identities=10% Similarity=0.023 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEe-cC-CCcHHHHHHHHhcCCcceec
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIG-LS-EACAATIRRAHAVHPITAVQ 177 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iG-vS-~~~~~~l~~~~~~~~~~~~q 177 (342)
.+++...+-++..+ +..++.++-.|-.. +-|+.+.+|.++.++.-+| =+ ..++..++++++....++++
T Consensus 295 ~s~~e~i~~~~~L~-----~~y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFV-----SDYPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHh-----hcCCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 45555544444433 33467788877543 3466777788887887666 22 35688999999998889999
Q ss_pred cccccCCcc-hhhhHHHHHHHhCCeEEec
Q 019368 178 LEWSLWSRD-VEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~~~gi~v~a~ 205 (342)
+..|-+-.- ...++.++|+++|+.++..
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 988865432 1357899999999998763
No 75
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=52.04 E-value=63 Score=30.39 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=58.7
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHHHHhC
Q 019368 122 DLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCRELG 199 (342)
Q Consensus 122 Dl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~g 199 (342)
++.++-.|-+. +-++.+.+|+++..|. ..|=|.++...+.++++....+++|+..+..-.- ...++.+.|+++|
T Consensus 198 ~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g 273 (341)
T cd03327 198 ELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYG 273 (341)
T ss_pred CCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcC
Confidence 55555555432 2366677788777665 5667778999999999988899999987765321 1358999999999
Q ss_pred CeEEecc
Q 019368 200 IGIVAYG 206 (342)
Q Consensus 200 i~v~a~~ 206 (342)
+.++.++
T Consensus 274 ~~~~~h~ 280 (341)
T cd03327 274 VPVVPHA 280 (341)
T ss_pred Ceecccc
Confidence 9987653
No 76
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=51.54 E-value=80 Score=31.78 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCC---CCCHHHHHHHHHHHHHcCCccEE----ecCCC--cHHHHHHHHhcCCc
Q 019368 103 AYVRACCEASLKRLDIDCIDLYYQHRVDT---KIPIEVTIGELKKLVEEGKIKYI----GLSEA--CAATIRRAHAVHPI 173 (342)
Q Consensus 103 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~---~~~~~~~~~~L~~l~~~G~ir~i----GvS~~--~~~~l~~~~~~~~~ 173 (342)
+...+-++..++..+-.+.+ -|-.-. ...+.++++-|-+++++|+||.+ |.+|- ....+....+..+=
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelipr 436 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPR 436 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhccc
Confidence 66777889999988866666 111110 11245677788999999999987 33432 11233444444443
Q ss_pred ceeccccccCCcchhhhHHHHHHHhCCe
Q 019368 174 TAVQLEWSLWSRDVEAEIVPTCRELGIG 201 (342)
Q Consensus 174 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 201 (342)
+++-+...=... .-..++.|...||+
T Consensus 437 D~lVLt~GCgk~--~~~~~~vc~~lGIP 462 (576)
T COG1151 437 DILVLTLGCGKY--RFNKADVGDILGIP 462 (576)
T ss_pred ceEEEecccchh--hhhhhccccccCCC
Confidence 433222111111 12344888888886
No 77
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=51.39 E-value=1.5e+02 Score=29.48 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH----cCCccEEecC--CCcHHHHHHHHhcC
Q 019368 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE----EGKIKYIGLS--EACAATIRRAHAVH 171 (342)
Q Consensus 98 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~----~G~ir~iGvS--~~~~~~l~~~~~~~ 171 (342)
...+.+.|.+.++. ++.+|...+-|+.=..| +..+++.+.+.++.+++ .|.++.++|+ ..+.++++++.+.+
T Consensus 113 ~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 113 KKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred eECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 45678999888875 57799777766432222 33467777777777775 4677777764 35777888876653
Q ss_pred --Ccceecccccc-----CC-----cchh--hhHHHHHHHhCCeEEecccc
Q 019368 172 --PITAVQLEWSL-----WS-----RDVE--AEIVPTCRELGIGIVAYGPL 208 (342)
Q Consensus 172 --~~~~~q~~~~~-----~~-----~~~~--~~~~~~~~~~gi~v~a~~pl 208 (342)
...++|--||. ++ +..+ -+.++.+++.|+.-+....|
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 33444544431 11 1111 35778888999874444333
No 78
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=51.17 E-value=85 Score=29.04 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCC----CHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhc-CCccee
Q 019368 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKI----PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAV 176 (342)
Q Consensus 102 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~----~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 176 (342)
.+.+++.+.+-+++.|+|++=++.+-.-.... .....+++|++..+++.-. .++..+-..... .+..++
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCeE
Confidence 46678889999999998754444333322211 2235788888888876522 234443222221 332333
Q ss_pred ccccccCCcchhhhHHHHHHHhCCeEEec---ccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHHHHH
Q 019368 177 QLEWSLWSRDVEAEIVPTCRELGIGIVAY---GPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEI 253 (342)
Q Consensus 177 q~~~~~~~~~~~~~~~~~~~~~gi~v~a~---~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 253 (342)
..-=+.... ...+.+.++++|+.+..- ++++.+++ --+-.+.++
T Consensus 205 N~tP~~~a~--~P~l~ela~~~gvpi~GdD~KT~lAAplv-------------------------------lDLirl~~l 251 (295)
T PF07994_consen 205 NGTPSNIAD--DPALVELAEEKGVPIAGDDGKTPLAAPLV-------------------------------LDLIRLAKL 251 (295)
T ss_dssp E-SSSTTTT--SHHHHHHHHHHTEEEEESSBS-HHHHHHH-------------------------------HHHHHHHHH
T ss_pred eccCccccC--CHHHHHHHHHcCCCeecchHhhhhhhHHH-------------------------------HHHHHHHHH
Confidence 222222222 358999999999987652 23333322 224477889
Q ss_pred HHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHH
Q 019368 254 AMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQL 288 (342)
Q Consensus 254 a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l 288 (342)
|.+.|+.-.+-.++|.+..|. +=.|......+
T Consensus 252 a~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 252 ALRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp HHHTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HHHcCCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 999999888889999999885 23455555554
No 79
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=51.06 E-value=2.6e+02 Score=27.73 Aligned_cols=111 Identities=10% Similarity=0.056 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCc-HHHHHHHHhcC-CCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYT-NEILVGKALKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~-sE~~lG~al~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL 113 (342)
+++-.+..++.|.++||..|=..++-.+-+ .+..+. +.++ ...-.+.|+-... +.++.+++.+.+++ +
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~-~ak~~G~~~~~~i~yt~s--------p~~t~~y~~~~a~~-l 172 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALR-AVKKTGKEAQLCIAYTTS--------PVHTLNYYLSLVKE-L 172 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHH-HHHHcCCEEEEEEEEEeC--------CcCcHHHHHHHHHH-H
Confidence 346677889999999998888777665321 233333 2232 1111122332222 23456666665554 5
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCc
Q 019368 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC 160 (342)
Q Consensus 114 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 160 (342)
..+|. |.+.|-...-.....++.+-+..+++...+ -||+=.|+
T Consensus 173 ~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hn 215 (468)
T PRK12581 173 VEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHA 215 (468)
T ss_pred HHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCC
Confidence 66785 555555544444556666666666665432 46665443
No 80
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=50.65 E-value=1.8e+02 Score=25.89 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=35.3
Q ss_pred hhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCC
Q 019368 189 AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGC 259 (342)
Q Consensus 189 ~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 259 (342)
...+++|+..|...+...|...|... ...+.++...+.++.+.++|+++|+
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT--------------------PPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC--------------------CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46789999999999877664433111 1123456667778888899999886
No 81
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=50.49 E-value=2.4e+02 Score=27.25 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeecccc----CCCCCCCCCHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISF----ADGGKIRGDPAYVRACCEA 111 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~----~~~~~~~~~~~~i~~~~~~ 111 (342)
+.+.-.+-++.|++.|-..+-==+..|+ -..+=-+.|+.. .+-|-| +.... ..+...+.+.+.+.+.+++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLStGgd--l~~iR~~il~~s---~vpvGT-VPiYqa~~~~~~~~~~mt~d~~~~~ie~ 148 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLSTGGD--LDEIRKAILDAV---PVPVGT-VPIYQAAEKVHGAVEDMDEDDMFRAIEK 148 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccCCCC--HHHHHHHHHHcC---CCCccC-ccHHHHHHHhcCChhhCCHHHHHHHHHH
Confidence 3344455589999999765543333443 333333333321 111111 00000 0012246788888888887
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCcceeccccccCCcchhhhH
Q 019368 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEI 191 (342)
Q Consensus 112 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~ 191 (342)
..+ |-+|.+.+|.-- ..+.++.++++|+ ..|+-+-...-+...+... -.-|++... .+.+
T Consensus 149 qa~----dGVDfmTiH~Gi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~------~~ENPlye~-fD~l 208 (423)
T TIGR00190 149 QAK----DGVDFMTIHAGV-------LLEYVERLKRSGR--ITGIVSRGGAILAAWMLHH------HKENPLYKN-FDYI 208 (423)
T ss_pred HHH----hCCCEEEEccch-------hHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHc------CCcCchHHH-HHHH
Confidence 776 457999999853 3677888888885 5676655544444433222 234555544 3589
Q ss_pred HHHHHHhCCeEEecccccccccC
Q 019368 192 VPTCRELGIGIVAYGPLGQGFLS 214 (342)
Q Consensus 192 ~~~~~~~gi~v~a~~pl~~G~l~ 214 (342)
++.|+++++.+.--.-|--|-+.
T Consensus 209 LeI~~~yDVtlSLGDglRPG~i~ 231 (423)
T TIGR00190 209 LEIAKEYDVTLSLGDGLRPGCIA 231 (423)
T ss_pred HHHHHHhCeeeeccCCcCCCccc
Confidence 99999999988655555555443
No 82
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=50.39 E-value=1.9e+02 Score=25.96 Aligned_cols=145 Identities=14% Similarity=0.047 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCC-----------CCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHH
Q 019368 35 EPEPDMIALIHHAINSGITLLDTSDI-----------YGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPA 103 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~-----------Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~ 103 (342)
.+.++..++++.-.+.||..++.+.. |..-..++.+.+..+..+..++.+..- +. ....+
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~--~~-------~~~~~ 89 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLL--PG-------IGTVD 89 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEec--CC-------ccCHH
Confidence 36788899999999999999999721 211124556655545434444432221 10 11233
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEec---CCCcHHHHHHHHhc---CCcceec
Q 019368 104 YVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL---SEACAATIRRAHAV---HPITAVQ 177 (342)
Q Consensus 104 ~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGv---S~~~~~~l~~~~~~---~~~~~~q 177 (342)
. ++.+++ .|++.+-++. ...+...+.+.++.+++.|.--.+.+ +.++++.+.++++. .+.+.+.
T Consensus 90 ~----i~~a~~-~g~~~iri~~-----~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~ 159 (263)
T cd07943 90 D----LKMAAD-LGVDVVRVAT-----HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVY 159 (263)
T ss_pred H----HHHHHH-cCCCEEEEEe-----chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3 444443 3666555433 12234567788888888887554444 23566665544433 3344443
Q ss_pred cccc--cCCcchhhhHHHHHHHh
Q 019368 178 LEWS--LWSRDVEAEIVPTCREL 198 (342)
Q Consensus 178 ~~~~--~~~~~~~~~~~~~~~~~ 198 (342)
+.=+ .+.+..-.+++..++++
T Consensus 160 l~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 160 VTDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred EcCCCCCcCHHHHHHHHHHHHHh
Confidence 3222 22222223566666654
No 83
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=50.12 E-value=2.2e+02 Score=26.65 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=54.1
Q ss_pred HHHHHcCCCcccEEEeec-CCC-CCCHHHHHHHHHHHHHcCCccE-EecCCC---cHHHHHHHHhcCC-cceeccccccC
Q 019368 111 ASLKRLDIDCIDLYYQHR-VDT-KIPIEVTIGELKKLVEEGKIKY-IGLSEA---CAATIRRAHAVHP-ITAVQLEWSLW 183 (342)
Q Consensus 111 ~SL~~Lg~d~iDl~~lH~-p~~-~~~~~~~~~~L~~l~~~G~ir~-iGvS~~---~~~~l~~~~~~~~-~~~~q~~~~~~ 183 (342)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+-- |..|.. +++.|+.+++... -.++.+..+
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 444588888888765333 322 2234444455554444333333 555532 6788888877632 112222222
Q ss_pred CcchhhhHHHHHHHhCCeEEecccc
Q 019368 184 SRDVEAEIVPTCRELGIGIVAYGPL 208 (342)
Q Consensus 184 ~~~~~~~~~~~~~~~gi~v~a~~pl 208 (342)
...-..+.+.|+++|..+++.+|.
T Consensus 161 -~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 -EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred -HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 111357999999999999998754
No 84
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=49.95 E-value=2.3e+02 Score=26.74 Aligned_cols=149 Identities=9% Similarity=0.021 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcC
Q 019368 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (342)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg 117 (342)
++..+.+..+.+.|++.|=.=-...+-..+.-.=+++++.-.+++.|..-.. ..++.+...+ +-+.|+.
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN--------~~~~~~~A~~-~~~~l~~-- 211 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYN--------QSLTVPEAIE-RGQALDQ-- 211 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCC--------CCcCHHHHHH-HHHHHHc--
Confidence 4555566666778876553211111101222223344443333444443332 1334443222 2233333
Q ss_pred CCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHH
Q 019368 118 IDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTC 195 (342)
Q Consensus 118 ~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~ 195 (342)
+++.++..|-... -++.+.+++++.-|. ..|=+.++...+..+++...++++|+..+..-.- .-.++.++|
T Consensus 212 ---~~i~~iEeP~~~~----d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A 284 (355)
T cd03321 212 ---EGLTWIEEPTLQH----DYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALA 284 (355)
T ss_pred ---CCCCEEECCCCCc----CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHH
Confidence 3566677665432 356677777765443 4566778999999999988899999988765321 124789999
Q ss_pred HHhCCeEEe
Q 019368 196 RELGIGIVA 204 (342)
Q Consensus 196 ~~~gi~v~a 204 (342)
+.+|+.++.
T Consensus 285 ~~~gi~~~~ 293 (355)
T cd03321 285 EQAGIPMSS 293 (355)
T ss_pred HHcCCeecc
Confidence 999999764
No 85
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=49.74 E-value=1.1e+02 Score=28.69 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcchhhhHHHHHHHhCCeEEeccccccc
Q 019368 139 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (342)
Q Consensus 139 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G 211 (342)
++.+.+++++-.|. +.|=|-++...+.+++.....+++|+..+.+-. -.+.++.|+++||.++..+.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccH
Confidence 45556665554333 445566778888888888889999998887654 246788899999999988776554
No 86
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=49.50 E-value=1.7e+02 Score=27.98 Aligned_cols=84 Identities=18% Similarity=0.068 Sum_probs=57.2
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHc------CCccEEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHHH
Q 019368 124 YYQHRVDTKIPIEVTIGELKKLVEE------GKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCR 196 (342)
Q Consensus 124 ~~lH~p~~~~~~~~~~~~L~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~ 196 (342)
+++-.|-+..+.++-++.+.++.+. +.=-..|-|.++.+.+.++++....+++|+..+-.-.- ...++.++|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 4555554333222346666666665 22234566778899999999888899999988864322 1358899999
Q ss_pred HhCCeEEeccc
Q 019368 197 ELGIGIVAYGP 207 (342)
Q Consensus 197 ~~gi~v~a~~p 207 (342)
.+||.++..+.
T Consensus 310 a~Gi~~~~h~~ 320 (369)
T cd03314 310 EHGVGAYLGGS 320 (369)
T ss_pred HcCCcEEEeCC
Confidence 99999998654
No 87
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=48.24 E-value=2.2e+02 Score=26.07 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---CCC-----CCCCcHHHHHHHHhcCCCCC-CEEEEeeeccccCCCCCCCCCHHHH
Q 019368 36 PEPDMIALIHHAINSG-ITLLDT---SDI-----YGPYTNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAYV 105 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~G-i~~~DT---A~~-----Yg~g~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~i 105 (342)
+.++..+..+.+-+.| +..||- +++ |..+...+.+-+.++..++. ++-|..|+.+. .+.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~ 171 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN----------VTDI 171 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC----------chhH
Confidence 4567778888888888 899975 222 12223566666666653221 57788998743 1223
Q ss_pred HHHHHHHHHHcCCCcccEEE-eecC--CCCC----------------CHHHHHHHHHHHHHcCCccEEecCCC-cHHHHH
Q 019368 106 RACCEASLKRLDIDCIDLYY-QHRV--DTKI----------------PIEVTIGELKKLVEEGKIKYIGLSEA-CAATIR 165 (342)
Q Consensus 106 ~~~~~~SL~~Lg~d~iDl~~-lH~p--~~~~----------------~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~ 165 (342)
..+-+.++..|.|.|++.- ++.. +... ...-.++.+.++++.=.+--||+... +++...
T Consensus 172 -~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~ 250 (301)
T PRK07259 172 -VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAI 250 (301)
T ss_pred -HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 2344567788887776531 1111 0000 00124566667766656788888885 788888
Q ss_pred HHHhcCCcceeccccccCC-cc----hhhhHHHHHHHhCC
Q 019368 166 RAHAVHPITAVQLEWSLWS-RD----VEAEIVPTCRELGI 200 (342)
Q Consensus 166 ~~~~~~~~~~~q~~~~~~~-~~----~~~~~~~~~~~~gi 200 (342)
+++... .+.+|+-=-++. .. ...++-.++.++|.
T Consensus 251 ~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 251 EFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 888754 688876433322 11 22456666677664
No 88
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=47.70 E-value=1.2e+02 Score=29.35 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeec-CCCC-----------CC-HH---HHH-HHHHHHHHcCCccEEecCCCcH
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTK-----------IP-IE---VTI-GELKKLVEEGKIKYIGLSEACA 161 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~-p~~~-----------~~-~~---~~~-~~L~~l~~~G~ir~iGvS~~~~ 161 (342)
..+.+.+.+.++..+ .|+.++|.++.+.- |... .+ .+ +.+ .+.+.|.+.|- .++++|||..
T Consensus 178 gqt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeisnfa~ 255 (400)
T PRK07379 178 HQTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGY-EHYEISNYAK 255 (400)
T ss_pred CCCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-ceeeeeheEC
Confidence 447777877777655 48889998887662 2110 01 11 122 35566777776 4689998864
No 89
>PRK06424 transcription factor; Provisional
Probab=47.35 E-value=86 Score=25.65 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=40.0
Q ss_pred hhhHHHHHHHhCCeEEec---ccccc--cccCCCCC-CCCCCCcc--hhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCC
Q 019368 188 EAEIVPTCRELGIGIVAY---GPLGQ--GFLSSGPK-LVESFSKY--DFRKCMPKFQAENLEHNKKLFERVNEIAMRKGC 259 (342)
Q Consensus 188 ~~~~~~~~~~~gi~v~a~---~pl~~--G~l~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 259 (342)
+..+-+-|.+.|..+..+ +|... -....... ........ ..+.. +.....+.....-+.++.+-++.|+
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~g~~Ir~lRe~~GL 98 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYKKK---ASDEDLDIVEDYAELVKNARERLSM 98 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCccCc---ccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356888999999999998 55543 11110000 00000000 00000 1111122223344567777788899
Q ss_pred CHHHHHHHHHH
Q 019368 260 TPAQLALAWVH 270 (342)
Q Consensus 260 s~~q~al~~~l 270 (342)
|..++|-+--.
T Consensus 99 SQ~eLA~~iGv 109 (144)
T PRK06424 99 SQADLAAKIFE 109 (144)
T ss_pred CHHHHHHHhCC
Confidence 99998865443
No 90
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=47.02 E-value=2.2e+02 Score=25.63 Aligned_cols=104 Identities=13% Similarity=-0.009 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCcceeccc
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLE 179 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~ 179 (342)
.+++.+.+..++.++ -|.|+||+-. .|......++.-+.+..+.+.-. .-|.|-++.++.++.+++...=..+-+.
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iINs 98 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVNS 98 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEEe
Confidence 356777777666664 4999999865 23322222333333233332212 2378888999999999886211223344
Q ss_pred cccCCc-chhhhHHHHHHHhCCeEEeccc
Q 019368 180 WSLWSR-DVEAEIVPTCRELGIGIVAYGP 207 (342)
Q Consensus 180 ~~~~~~-~~~~~~~~~~~~~gi~v~a~~p 207 (342)
.+.... ....++++.++++|..++.+.-
T Consensus 99 Is~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 99 INLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred CCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 444331 1135788889999998888643
No 91
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=46.98 E-value=1.4e+02 Score=28.53 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeec-CCCC-----------CCH-H---HH-HHHHHHHHHcCCccEEecCCCcH
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTK-----------IPI-E---VT-IGELKKLVEEGKIKYIGLSEACA 161 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~-p~~~-----------~~~-~---~~-~~~L~~l~~~G~ir~iGvS~~~~ 161 (342)
..+.+.+.+.++..+ .|+.++|.+|.+.- |... .+- + +. ..+.+.|.+.|- .++++|||..
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 457888888887766 48999999987763 2210 011 1 12 234555667776 4588888864
No 92
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=46.87 E-value=1.1e+02 Score=26.73 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCC-CcHH---HHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGP-YTNE---ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~-g~sE---~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (342)
++++...+.+.+.++|..|+=|+.-|+. |-+. +.+.+.++. . +-.|.... .+ +.+...+-++.
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~----~--v~IKaaGG------ir-t~~~a~~~i~a 196 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD----T--IGVKASGG------VR-TAEDAIAMIEA 196 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc----C--CeEEEeCC------CC-CHHHHHHHHHH
Confidence 5567789999999999999999988863 3222 444455442 2 34444221 12 67888888888
Q ss_pred HHHHcCCCc
Q 019368 112 SLKRLDIDC 120 (342)
Q Consensus 112 SL~~Lg~d~ 120 (342)
--.|+|+++
T Consensus 197 Ga~riGts~ 205 (211)
T TIGR00126 197 GASRIGASA 205 (211)
T ss_pred hhHHhCcch
Confidence 899999865
No 93
>PRK12928 lipoyl synthase; Provisional
Probab=46.09 E-value=2.2e+02 Score=26.23 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHcC---CccE---EecCCCcHHHHHHHHhc---CCcceecc-cccc-------CCcc----hhhhH
Q 019368 133 IPIEVTIGELKKLVEEG---KIKY---IGLSEACAATIRRAHAV---HPITAVQL-EWSL-------WSRD----VEAEI 191 (342)
Q Consensus 133 ~~~~~~~~~L~~l~~~G---~ir~---iGvS~~~~~~l~~~~~~---~~~~~~q~-~~~~-------~~~~----~~~~~ 191 (342)
...++.++.++.+++.| .++. +|+ +-+.+++.+.+.. .+++.+.+ +|.. +.+. ....+
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 45678899999999988 3332 577 5566665544433 45555544 4432 1111 12467
Q ss_pred HHHHHHhCCeEEecccccc
Q 019368 192 VPTCRELGIGIVAYGPLGQ 210 (342)
Q Consensus 192 ~~~~~~~gi~v~a~~pl~~ 210 (342)
.+.+.+.|...++.+||-.
T Consensus 264 ~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 264 GQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHcCCceeEecCccc
Confidence 7788888988888888865
No 94
>PLN02389 biotin synthase
Probab=45.81 E-value=2.8e+02 Score=26.61 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCC-CCCc---HHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHH
Q 019368 35 EPEPDMIALIHHAINSGITLLDTSDIY-GPYT---NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Y-g~g~---sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (342)
.+.++..+.++.+.+.|++.|--.... +.+. .-..+-+.++..+...+.|....|.. +.+. -
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l---------~~E~-----l 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML---------EKEQ-----A 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC---------CHHH-----H
Confidence 477888888888999999987432111 1111 12345555555333345555444432 3332 3
Q ss_pred HHHHHcCCCcccEEEe------ecCCCCCCHHHHHHHHHHHHHcCC
Q 019368 111 ASLKRLDIDCIDLYYQ------HRVDTKIPIEVTIGELKKLVEEGK 150 (342)
Q Consensus 111 ~SL~~Lg~d~iDl~~l------H~p~~~~~~~~~~~~L~~l~~~G~ 150 (342)
+.|+..|+|++-+-+= +..-....+++.++.++.+++.|.
T Consensus 182 ~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 AQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 4455668776433211 000112357888999999999985
No 95
>PRK09061 D-glutamate deacylase; Validated
Probab=45.81 E-value=1.9e+02 Score=29.01 Aligned_cols=114 Identities=13% Similarity=0.050 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q 019368 40 MIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID 119 (342)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d 119 (342)
..++++.|++.|+..|=+...|..+.+...+-+.++...+-...|.+.+.... ..+......++++.++..+..
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~------~~~~~~e~~av~~~i~lA~~~ 244 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS------NVDPRSSVDAYQELIAAAAET 244 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc------cCCchhHHHHHHHHHHHHHHh
Confidence 67788889999999998766675554666666666554444566666554220 011122223344444333211
Q ss_pred cccEEEeecCCCC-CCHHHHHHHHHHHHHcCCccEEecCCC
Q 019368 120 CIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEA 159 (342)
Q Consensus 120 ~iDl~~lH~p~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~~ 159 (342)
-.-+...|-.... ....+.++.+++++++|.--..-++.|
T Consensus 245 G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 245 GAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred CCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 2346667765422 346788999999999985333334333
No 96
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=45.67 E-value=1.3e+02 Score=26.56 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=51.3
Q ss_pred CcHHHHHHHHhcCCcceec----cccccCCcch---hhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhc
Q 019368 159 ACAATIRRAHAVHPITAVQ----LEWSLWSRDV---EAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKC 231 (342)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~q----~~~~~~~~~~---~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~ 231 (342)
.++.+++.+.+...+.++- .+||.+.... ..++.++++..|-.-+.+.|+..|... + ...+
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~-~----~~vr------- 116 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWP-G----TAVR------- 116 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCC-C----cccc-------
Confidence 3556666666665544442 2566655431 247999999999999999999886322 1 0111
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHhCC
Q 019368 232 MPKFQAENLEHNKKLFERVNEIAMRKGC 259 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 259 (342)
.....+.+.+|+.|.+++|+
T Consensus 117 --------~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 117 --------REDLVEALKALKPILDEYGI 136 (272)
T ss_pred --------hHHHHHHHHHhhHHHHHhCc
Confidence 22345567788888888875
No 97
>PRK06740 histidinol-phosphatase; Validated
Probab=45.54 E-value=2.6e+02 Score=26.26 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCC-----CC--------C----HHHHHHHHHHHHHcCCccEEe
Q 019368 107 ACCEASLKRLDIDCIDLYYQHRVDT-----KI--------P----IEVTIGELKKLVEEGKIKYIG 155 (342)
Q Consensus 107 ~~~~~SL~~Lg~d~iDl~~lH~p~~-----~~--------~----~~~~~~~L~~l~~~G~ir~iG 155 (342)
..++..|+....||+ |.-+|..+. .. . .+.-++.+.++++.|.+..||
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIg 220 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIA 220 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 345566666677776 778887541 11 1 123567888889999887776
No 98
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=45.09 E-value=2.9e+02 Score=26.58 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHH-----------HHcCCCcccEEEeecCCCC-----CCHHHHHHHHHHHHHcCCcc-EEecC---CCcH
Q 019368 102 PAYVRACCEASL-----------KRLDIDCIDLYYQHRVDTK-----IPIEVTIGELKKLVEEGKIK-YIGLS---EACA 161 (342)
Q Consensus 102 ~~~i~~~~~~SL-----------~~Lg~d~iDl~~lH~p~~~-----~~~~~~~~~L~~l~~~G~ir-~iGvS---~~~~ 161 (342)
++.+.+.++... +.+| +|++.||....+ ...++..+..++..+.=.+- -|+=| ..++
T Consensus 127 ~~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~ 203 (389)
T TIGR00381 127 PKPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDP 203 (389)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCH
Confidence 355666666644 5555 689999975332 33556777777764543332 22222 4578
Q ss_pred HHHHHHHhcCCc-ceeccccccCCcchhhhHHHHHHHhCCeEEeccccccc
Q 019368 162 ATIRRAHAVHPI-TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (342)
Q Consensus 162 ~~l~~~~~~~~~-~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G 211 (342)
+.|+.+++...= .++....|.-. .-..+.+.|+++|..+++++|..-+
T Consensus 204 eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 204 LVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred HHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcHH
Confidence 888888776321 23333333221 1357999999999999999987754
No 99
>smart00642 Aamy Alpha-amylase domain.
Probab=44.96 E-value=38 Score=28.35 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=17.8
Q ss_pred hhHHHHHHHhCCeEEecccccc
Q 019368 189 AEIVPTCRELGIGIVAYGPLGQ 210 (342)
Q Consensus 189 ~~~~~~~~~~gi~v~a~~pl~~ 210 (342)
..+++.|+++||.|+.=-++..
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 73 KELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCCC
Confidence 5899999999999997555543
No 100
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=44.91 E-value=2.4e+02 Score=25.54 Aligned_cols=130 Identities=16% Similarity=0.116 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---CCCCCCC----cHHHHHHHHhcCCCCC-CEEEEeeeccccCCCCCCCCCHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDT---SDIYGPY----TNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAYVRA 107 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DT---A~~Yg~g----~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~i~~ 107 (342)
+.++..+..+.+.+.|+..|+. +++...+ ...+.+.+.++..++. ++-|+.|+... .+.+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~--------~~~~~~~~ 180 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY--------FDLEDIVE 180 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC--------CCHHHHHH
Confidence 4567888888888999999984 3332221 2345555555542221 56688898753 24455544
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCC-------------C---C-----H-HHHHHHHHHHHHcC--CccEEecCCC-cHH
Q 019368 108 CCEASLKRLDIDCIDLYYQHRVDTK-------------I---P-----I-EVTIGELKKLVEEG--KIKYIGLSEA-CAA 162 (342)
Q Consensus 108 ~~~~SL~~Lg~d~iDl~~lH~p~~~-------------~---~-----~-~~~~~~L~~l~~~G--~ir~iGvS~~-~~~ 162 (342)
+-+.++..|. |.+.+|+-... . . . .-.++.+.++++.= .+.-||.... +++
T Consensus 181 -~a~~l~~~Ga---d~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~ 256 (289)
T cd02810 181 -LAKAAERAGA---DGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE 256 (289)
T ss_pred -HHHHHHHcCC---CEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence 3345677785 55555532110 0 0 0 11355566665543 5666666664 456
Q ss_pred HHHHHHhcCCcceecc
Q 019368 163 TIRRAHAVHPITAVQL 178 (342)
Q Consensus 163 ~l~~~~~~~~~~~~q~ 178 (342)
.+.+.+... .+.+|+
T Consensus 257 da~~~l~~G-Ad~V~v 271 (289)
T cd02810 257 DVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHcC-ccHheE
Confidence 666666533 555555
No 101
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=44.84 E-value=2.1e+02 Score=24.96 Aligned_cols=98 Identities=16% Similarity=0.092 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHh---cCCcce
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA---VHPITA 175 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~~ 175 (342)
.++.+.. ..+-+.|.++|+++|.+- .|.......+.++.+.+.... .+-.+++......++...+ ....+.
T Consensus 10 ~~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 10 AFSTEEK-LEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp T--HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred CcCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 3455544 456667999999998888 332222233455555555555 4444555556666655433 344555
Q ss_pred eccccccCC--------------cchhhhHHHHHHHhCCeE
Q 019368 176 VQLEWSLWS--------------RDVEAEIVPTCRELGIGI 202 (342)
Q Consensus 176 ~q~~~~~~~--------------~~~~~~~~~~~~~~gi~v 202 (342)
+.+-.+..+ ...-.+.+.++++.|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 544443332 111246788999999988
No 102
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=44.65 E-value=1.3e+02 Score=26.86 Aligned_cols=111 Identities=16% Similarity=0.017 Sum_probs=60.8
Q ss_pred CcceeccccccCcCCCCCCHHHHHHHHHHHH-HcCCCeEeCCCCCCC--C-cHHHHHHHHhcCCCCCCEEEEeeeccccC
Q 019368 18 SAQGLGCMAMSCLYGPPEPEPDMIALIHHAI-NSGITLLDTSDIYGP--Y-TNEILVGKALKGGMRERVELATKFGISFA 93 (342)
Q Consensus 18 s~lglGt~~~g~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DTA~~Yg~--g-~sE~~lG~al~~~~R~~~~I~tK~~~~~~ 93 (342)
|+|.+||..+. +.+ ++..|+ ..|...+=.|----+ + ..+. ..+.-.+++.+.+.-...
T Consensus 9 SRL~lGTgky~-------s~~----~m~~ai~aSg~evvTvalRR~~~~~~~~~~---~~~~~i~~~~~~lLPNTa---- 70 (247)
T PF05690_consen 9 SRLILGTGKYP-------SPE----VMREAIEASGAEVVTVALRRVNLGSKPGGD---NILDYIDRSGYTLLPNTA---- 70 (247)
T ss_dssp -SEEEE-STSS-------SHH----HHHHHHHHTT-SEEEEECCGSTTTS-TTCH---HCCCCTTCCTSEEEEE-T----
T ss_pred cceEEecCCCC-------CHH----HHHHHHHHhCCcEEEEEEecccCCCCCCCc---cHHHHhcccCCEECCcCC----
Confidence 88999998762 333 455665 346655554421110 0 0112 223334556665543322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCC
Q 019368 94 DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGK 150 (342)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~~L~~l~~~G~ 150 (342)
...+.+.-.+-.+-+.+.++++.|-|=.+..+.... +.-+++++-+.|+++|-
T Consensus 71 ----Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF 124 (247)
T PF05690_consen 71 ----GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGF 124 (247)
T ss_dssp ----T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-
T ss_pred ----CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCC
Confidence 134677777777888899999988887776665543 46799999999999986
No 103
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=44.50 E-value=2.7e+02 Score=25.98 Aligned_cols=137 Identities=13% Similarity=0.091 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC----------CCCCCCC--cHHHHHHHHhcCC-CCCCEEEEeeeccccCCCCCCCCCH
Q 019368 36 PEPDMIALIHHAINSGITLLDT----------SDIYGPY--TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDP 102 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DT----------A~~Yg~g--~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 102 (342)
+.++..+..+.+.+.|+..||. ...+|.. ...+.+.+.++.. .--++-|+.|+...+. .+.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~------~~~ 148 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA------PEH 148 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc------CCc
Confidence 4566667777778899999993 1222321 1234444444432 1113457778754321 111
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCccEEecCCC-cHHHHHHHHhcCCcceeccc
Q 019368 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLE 179 (342)
Q Consensus 103 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~--~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~ 179 (342)
... ..+-+.++..| +|.+.+|.-...... ..-|+.+.++++.=.|--||.... ++++++++++....+.+|+-
T Consensus 149 ~~~-~~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 149 RNC-VEIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred chH-HHHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 122 23344467777 477788865432111 124777888888767777887764 78888888887778888775
Q ss_pred ccc
Q 019368 180 WSL 182 (342)
Q Consensus 180 ~~~ 182 (342)
=..
T Consensus 225 R~~ 227 (321)
T PRK10415 225 RAA 227 (321)
T ss_pred hHh
Confidence 433
No 104
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.47 E-value=2.8e+02 Score=26.27 Aligned_cols=102 Identities=10% Similarity=0.011 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC---CCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCcc
Q 019368 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK---IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPIT 174 (342)
Q Consensus 98 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~---~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 174 (342)
..++.+. +-.+-+.|.++|+++|++-..-.|..- .+.+++++.+.. ...++..++. .....++.+++... +
T Consensus 63 ~~~s~e~-Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~-~ 136 (347)
T PLN02746 63 NIVPTSV-KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGA-K 136 (347)
T ss_pred CCCCHHH-HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCc-C
Confidence 3455554 455677799999999998754454321 233455555543 2234544553 47788888877632 2
Q ss_pred eeccccccC--------Ccchh------hhHHHHHHHhCCeEEec
Q 019368 175 AVQLEWSLW--------SRDVE------AEIVPTCRELGIGIVAY 205 (342)
Q Consensus 175 ~~q~~~~~~--------~~~~~------~~~~~~~~~~gi~v~a~ 205 (342)
.+.+-++.- ....+ .+.+++++++|+.+..+
T Consensus 137 ~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 137 EVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 232222111 11111 36889999999988643
No 105
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=44.18 E-value=2.8e+02 Score=26.17 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHH---hcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKA---LKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~a---l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~S 112 (342)
..++..+.++++.+.|+..+=|+-.++.+.+|..+..+ ++..++..+.+..-+.+..- ..-+.|.+.+ ..
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil--~~l~~S~~~l-----~~ 86 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSIL--KELNISLDNL-----SR 86 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHH--hhcCCChHHH-----HH
Confidence 55677889999999999999999999987776554433 23335555555544433210 0011222222 33
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCC-cceeccccccCCcc-----
Q 019368 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHP-ITAVQLEWSLWSRD----- 186 (342)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~----- 186 (342)
++.+|++-+ =+ |.... -++..++-+++.--.+-.|+-+- .+..++.... +.-+ .-++.+.+.
T Consensus 87 f~e~G~~gl---Rl---D~gfS----~eei~~ms~~~lkieLN~S~it~-~l~~l~~~~an~~nl-~~cHNyYPr~yTGL 154 (360)
T COG3589 87 FQELGVDGL---RL---DYGFS----GEEIAEMSKNPLKIELNASTITE-LLDSLLAYKANLENL-EGCHNYYPRPYTGL 154 (360)
T ss_pred HHHhhhhhe---ee---cccCC----HHHHHHHhcCCeEEEEchhhhHH-HHHHHHHhccchhhh-hhcccccCCcccCc
Confidence 344443211 11 11222 23444566666433455555554 5555555422 1111 122222222
Q ss_pred ---hhhhHHHHHHHhCCeEEecccccc
Q 019368 187 ---VEAEIVPTCRELGIGIVAYGPLGQ 210 (342)
Q Consensus 187 ---~~~~~~~~~~~~gi~v~a~~pl~~ 210 (342)
.-.+.-++.+++|+...||-+-.+
T Consensus 155 S~e~f~~kn~~fk~~~i~t~AFis~~~ 181 (360)
T COG3589 155 SREHFKRKNEIFKEYNIKTAAFISSDG 181 (360)
T ss_pred cHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 223556678899999999865543
No 106
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=43.82 E-value=2.3e+02 Score=24.98 Aligned_cols=144 Identities=13% Similarity=0.007 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEE--------------eeeccccCCCCCCCCC
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELA--------------TKFGISFADGGKIRGD 101 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~--------------tK~~~~~~~~~~~~~~ 101 (342)
+.+++.++ ++.|+..+..+...-. +-..+.++.+....+.+.++ |+.|... ...+
T Consensus 82 s~~d~~~~----l~~G~~~v~ig~~~~~--~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~-----~~~~ 150 (243)
T cd04731 82 SLEDARRL----LRAGADKVSINSAAVE--NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKP-----TGLD 150 (243)
T ss_pred CHHHHHHH----HHcCCceEEECchhhh--ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCcee-----cCCC
Confidence 44444444 4468888877654432 33555555554433444433 2222211 1111
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHH-HHHHHHHHHHHcCCccEEecCC-CcHHHHHHHHhcCCcceeccc
Q 019368 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE-VTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLE 179 (342)
Q Consensus 102 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~-~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~ 179 (342)
. ..+-+.++.+| +|.+.+|..+...... --++.+.++++.-.+.-|..-. .+++.++++++....+.+.+-
T Consensus 151 ~----~~~~~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg 223 (243)
T cd04731 151 A----VEWAKEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAA 223 (243)
T ss_pred H----HHHHHHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 1 12234456666 4666676654422111 1355566666655566555544 367778877776666666553
Q ss_pred cccCCcch-hhhHHHHHHH
Q 019368 180 WSLWSRDV-EAEIVPTCRE 197 (342)
Q Consensus 180 ~~~~~~~~-~~~~~~~~~~ 197 (342)
--+..... ..++.++|++
T Consensus 224 ~al~~~~~~~~~~~~~~~~ 242 (243)
T cd04731 224 SIFHFGEYTIAELKEYLAE 242 (243)
T ss_pred HHHHcCCCCHHHHHHHHhh
Confidence 22222211 2355566654
No 107
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=43.58 E-value=2.4e+02 Score=25.22 Aligned_cols=64 Identities=16% Similarity=-0.001 Sum_probs=33.3
Q ss_pred HHHHHHcCCccEEec--CCCcHHHHHHHHhcCCccee--ccccccCCcchhhhHHHHHHHhCCeEEeccc
Q 019368 142 LKKLVEEGKIKYIGL--SEACAATIRRAHAVHPITAV--QLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (342)
Q Consensus 142 L~~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~~--q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~p 207 (342)
|.+..++|+. -+|+ ...++..++. +...++|++ -++.++++...-..++..++..|+.++..-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~-~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEI-CAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHH-HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 4455566875 3443 3334444444 444445555 4566665443223466666666777666543
No 108
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=43.52 E-value=3.1e+02 Score=26.47 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=41.3
Q ss_pred eeCcceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCC----cHHHHHHHHhcC-----CCCCCEEEEe
Q 019368 16 EVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPY----TNEILVGKALKG-----GMRERVELAT 86 (342)
Q Consensus 16 ~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g----~sE~~lG~al~~-----~~R~~~~I~t 86 (342)
.|=+++.|==+. ++.-.+..++.+.+..|+..| ....|+.. .+-+.+.+.+.+ ...+++++++
T Consensus 62 ~iipl~~GDPsv---~~~~~ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPSV---YPCFRTSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCCc---cccccCCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 344555553222 333335678999999999998 45567653 356677777643 3788888876
Q ss_pred ee
Q 019368 87 KF 88 (342)
Q Consensus 87 K~ 88 (342)
-+
T Consensus 134 GC 135 (447)
T KOG0259|consen 134 GC 135 (447)
T ss_pred cc
Confidence 54
No 109
>PRK05660 HemN family oxidoreductase; Provisional
Probab=43.39 E-value=1.6e+02 Score=28.09 Aligned_cols=61 Identities=10% Similarity=0.007 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee-cCCCC-------C-CHHHHHH----HHHHHHHcCCccEEecCCCcH
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH-RVDTK-------I-PIEVTIG----ELKKLVEEGKIKYIGLSEACA 161 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH-~p~~~-------~-~~~~~~~----~L~~l~~~G~ir~iGvS~~~~ 161 (342)
..+.+.+.+.++..++ |+.++|.+|.+- .|... . ..++.++ +.+.|.+.|- ..+++|||..
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 4578888887777555 899999988664 22210 1 1122222 3445666675 5578888864
No 110
>PLN02363 phosphoribosylanthranilate isomerase
Probab=43.27 E-value=73 Score=28.80 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=45.0
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCcHHHHHHHHhcCCcceeccccc
Q 019368 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (342)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 181 (342)
..++|.|++-+++..........+ ..+.+.+......++.+||- |-+++.+.++++..+++++|+.-.
T Consensus 63 a~~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~ 131 (256)
T PLN02363 63 AVEAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHGN 131 (256)
T ss_pred HHHcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 346899999987543322233333 33333333333246679985 788999999999999999999643
No 111
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=43.05 E-value=2.5e+02 Score=25.31 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCC-CCCCCcHHHHHHHHhcCCCC-CCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSD-IYGPYTNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~-~Yg~g~sE~~lG~al~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL 113 (342)
+.++..++++.-.+.||..++... .+.. .+.-.-+.+....+ ..++ + +. ....+.++.+ +
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~--~~~~~~~~l~~~~~~~~v~--~-~~---------r~~~~di~~a----~ 81 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTSPAASP--QSRADCEAIAKLGLKAKIL--T-HI---------RCHMDDARIA----V 81 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCH--HHHHHHHHHHhCCCCCcEE--E-Ee---------cCCHHHHHHH----H
Confidence 567889999999999999999864 3322 23222333433222 2221 1 11 2234555444 4
Q ss_pred HHcCCCcccEEEeecC-----CCCCCHH----HHHHHHHHHHHcCCccEEecCC---CcHHHHHHH
Q 019368 114 KRLDIDCIDLYYQHRV-----DTKIPIE----VTIGELKKLVEEGKIKYIGLSE---ACAATIRRA 167 (342)
Q Consensus 114 ~~Lg~d~iDl~~lH~p-----~~~~~~~----~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~ 167 (342)
+ .|++.|.++.-=++ ......+ .+.+.++.+++.|.--.+++.. .+++.+.++
T Consensus 82 ~-~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~ 146 (262)
T cd07948 82 E-TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRV 146 (262)
T ss_pred H-cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHH
Confidence 3 47777776652111 0112233 4555667777888755555432 344444433
No 112
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=43.00 E-value=35 Score=23.44 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 019368 249 RVNEIAMRKGCTPAQLALAWVH 270 (342)
Q Consensus 249 ~l~~ia~~~~~s~~q~al~~~l 270 (342)
-.-+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4568999999999999999984
No 113
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=42.68 E-value=2.6e+02 Score=25.32 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHH--HHHhcC-CCCCCE-EEEeeeccccCCCCCCCCCHHHHHHHHHHHH
Q 019368 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILV--GKALKG-GMRERV-ELATKFGISFADGGKIRGDPAYVRACCEASL 113 (342)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~l--G~al~~-~~R~~~-~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL 113 (342)
+...+.++.--+.|..+|..++.=+.+..+..+ +..|+. ..-+-+ +++.. +.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r-----------~~n~~~l~~~L~~~- 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI-----------GATREEIREILREY- 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec-----------CCCHHHHHHHHHHH-
Confidence 444555555557889999998876644344333 233432 111111 22211 33667776666644
Q ss_pred HHcCCCcccEEEeecCCC-------CCCHHHHHHHHHHHHHc-CCccEEecCCCcH---------HHHHHHHhc----CC
Q 019368 114 KRLDIDCIDLYYQHRVDT-------KIPIEVTIGELKKLVEE-GKIKYIGLSEACA---------ATIRRAHAV----HP 172 (342)
Q Consensus 114 ~~Lg~d~iDl~~lH~p~~-------~~~~~~~~~~L~~l~~~-G~ir~iGvS~~~~---------~~l~~~~~~----~~ 172 (342)
..+|++. ++.|-...+ ......+.+-++.+++. |. -.||+..++- .+++.+... ..
T Consensus 83 ~~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~ 159 (272)
T TIGR00676 83 RELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD 159 (272)
T ss_pred HHCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 7777543 333332211 12223344444444443 43 4677766431 233433332 33
Q ss_pred cceeccccccCCcchhhhHHHHHHHhCCeE
Q 019368 173 ITAVQLEWSLWSRDVEAEIVPTCRELGIGI 202 (342)
Q Consensus 173 ~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v 202 (342)
+-+-|.-|+. ..-.++++.|++.|+.+
T Consensus 160 f~iTQ~~fd~---~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 160 YAITQLFFDN---DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred eEeeccccCH---HHHHHHHHHHHHcCCCC
Confidence 5555665554 22357888999997654
No 114
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=42.61 E-value=60 Score=32.01 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=43.9
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCcHHHHHHHHhcCCcceeccccc
Q 019368 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (342)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 181 (342)
...+|.|++-+.+........+.+.+-+-...+. ++.+||- |-+++.+.++++..+++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4558889988864333223333443322222222 8889987 678999999999999999999765
No 115
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=42.55 E-value=1.8e+02 Score=26.19 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHc-CCccEEecC---CCcHHHHHHHHh
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEE-GKIKYIGLS---EACAATIRRAHA 169 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~-----~~~~~~~~~~L~~l~~~-G~ir~iGvS---~~~~~~l~~~~~ 169 (342)
.++.+.. ..+-+.|.++|+++|.+-+...... ..+....++.++.+++. ..++...++ ......++.+.+
T Consensus 18 ~~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 4556655 4466669999999999986532110 00111234555555333 345655554 234566666655
Q ss_pred cCCcceeccccccCCcchhhhHHHHHHHhCCeEEec
Q 019368 170 VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 170 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 205 (342)
. .++.+.+-.+.-+...-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 3 4565555443322222357888889999876553
No 116
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=42.55 E-value=3.3e+02 Score=26.49 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCC--CCCCEEE---EeeeccccCCCCCCCCCHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG--MRERVEL---ATKFGISFADGGKIRGDPAYVRACCE 110 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~--~R~~~~I---~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (342)
+.+.-.+-++.|++.|-..+-==+..|+ -..+--+.|+.. +-..|=| ..+. ....+...+.+.+.+.+.++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLStggd--l~~iR~~il~~s~vpvGTVPiYqa~~~~--~~k~~~~~~mt~d~~~~~ie 150 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLSTGGD--LDEIRRAIIEASPVPVGTVPIYQAAVEA--ARKYGSVVDMTEDDLFDVIE 150 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccCCCC--HHHHHHHHHHcCCCCCcChhHHHHHHHH--HhcCCChhhCCHHHHHHHHH
Confidence 3344455589999999865543333443 333333333331 1111000 0000 00001224678888888888
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCcceeccccccCCcchhhh
Q 019368 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAE 190 (342)
Q Consensus 111 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 190 (342)
+..+ +-+|.+.+|.-- ..+.++.++++|+ ..|+-+-...-+...+... ..=|++... .+.
T Consensus 151 ~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n------~~ENPlye~-fD~ 210 (431)
T PRK13352 151 KQAK----DGVDFMTIHCGV-------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLHN------NKENPLYEH-FDY 210 (431)
T ss_pred HHHH----hCCCEEEEccch-------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHc------CCcCchHHH-HHH
Confidence 7776 458999999853 3567888888885 5676555544444333221 234565544 358
Q ss_pred HHHHHHHhCCeEEecccccccccC
Q 019368 191 IVPTCRELGIGIVAYGPLGQGFLS 214 (342)
Q Consensus 191 ~~~~~~~~gi~v~a~~pl~~G~l~ 214 (342)
+++.|+++++.+.--.-|--|.+.
T Consensus 211 lLeI~~~yDVtlSLGDglRPG~i~ 234 (431)
T PRK13352 211 LLEILKEYDVTLSLGDGLRPGCIA 234 (431)
T ss_pred HHHHHHHhCeeeeccCCcCCCccc
Confidence 999999999998665555555444
No 117
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.89 E-value=3.5e+02 Score=26.60 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCCeEe--------CCCCCCCC----cHHHHHHHHhcCC-CCCCEEEEeeeccccCCCCCCCCCHHHHH
Q 019368 40 MIALIHHAINSGITLLD--------TSDIYGPY----TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDPAYVR 106 (342)
Q Consensus 40 ~~~~l~~A~~~Gi~~~D--------TA~~Yg~g----~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~i~ 106 (342)
..+++++|+|+|---+- |+..|.++ ..+++.+.++.-. .+..+.-+|... .....+.
T Consensus 184 MaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~ag~~iLqst~d~----------~egaa~L 253 (579)
T COG3653 184 MAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVARAGGRILQSTHDR----------DEGAAAL 253 (579)
T ss_pred HHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHHhcCceeEeeccc----------cchHHHH
Confidence 57899999999864444 56666543 2456666665321 344444444321 1344556
Q ss_pred HHHHHHHHHcC-CCcccEEEeecCCC
Q 019368 107 ACCEASLKRLD-IDCIDLYYQHRVDT 131 (342)
Q Consensus 107 ~~~~~SL~~Lg-~d~iDl~~lH~p~~ 131 (342)
+.++++-+.-+ -..+-+.+.|..+.
T Consensus 254 ~~l~~a~ri~~R~~~vr~v~s~~a~a 279 (579)
T COG3653 254 EALLEASRIGNRRKGVRMVMSHSADA 279 (579)
T ss_pred HHHHHHHHhcCcccCceEEEeccccc
Confidence 66777766663 34578888887654
No 118
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=41.10 E-value=97 Score=25.66 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~ 115 (342)
+++..+-.+++|-+.||.+|=.|..||. +-.-+-+.+.. . =++++.|.-..+. .-+...+.+.+++-|+.
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~------e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFE------EKGTQEMDEEVRKELKE 81 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeecccc------cCCceecCHHHHHHHHH
Confidence 3455566778888999999999999985 44434444433 1 2355555432221 11233356678888888
Q ss_pred cCC
Q 019368 116 LDI 118 (342)
Q Consensus 116 Lg~ 118 (342)
.|.
T Consensus 82 rGa 84 (186)
T COG1751 82 RGA 84 (186)
T ss_pred cCc
Confidence 885
No 119
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=40.82 E-value=3.7e+02 Score=26.50 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=61.4
Q ss_pred CCCCCCCCcHHHHHHHHhcC----CC-CCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCC----cccEEEee
Q 019368 57 TSDIYGPYTNEILVGKALKG----GM-RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID----CIDLYYQH 127 (342)
Q Consensus 57 TA~~Yg~g~sE~~lG~al~~----~~-R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d----~iDl~~lH 127 (342)
..-.|| .|+-|-++|+. .+ .+-++|.|-+...- --++|..-+++.-+.++-+ .+.++.+|
T Consensus 64 ~d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~ei--------IGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 64 DSAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEI--------IGDDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred CceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhh--------hccCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 345788 56677777765 22 34467777765321 2233444444433333211 47899999
Q ss_pred cCCCCCCH-HHHHHHHHHHHH--------cCCccEEecCC--CcHHHHHHHHhcCCcceecc
Q 019368 128 RVDTKIPI-EVTIGELKKLVE--------EGKIKYIGLSE--ACAATIRRAHAVHPITAVQL 178 (342)
Q Consensus 128 ~p~~~~~~-~~~~~~L~~l~~--------~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~q~ 178 (342)
.|+..... .....+++.+.+ +++|--||-.+ .+.+.|+++++...+.++.+
T Consensus 133 tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 133 TPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 99887532 233333333332 35677776433 34567778888777666644
No 120
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.44 E-value=2.7e+02 Score=24.79 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=48.5
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHH-HHHHHHHHHHHcCCccEEecCC-CcHHHHHHHHhcCCcceeccccccCCcc-h
Q 019368 111 ASLKRLDIDCIDLYYQHRVDTKIPIE-VTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSLWSRD-V 187 (342)
Q Consensus 111 ~SL~~Lg~d~iDl~~lH~p~~~~~~~-~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~ 187 (342)
+.+..+| +|-+.+|..+...... --|+.+.++.+.-.+.-|.-.. .+.+.+.++.+....+.+.+---+.... .
T Consensus 160 ~~~~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~ 236 (253)
T PRK02083 160 KEVEELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEIT 236 (253)
T ss_pred HHHHHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCC
Confidence 3345566 4666776654321111 1256666666655566555443 4677888877665555444421111111 1
Q ss_pred hhhHHHHHHHhCCeE
Q 019368 188 EAEIVPTCRELGIGI 202 (342)
Q Consensus 188 ~~~~~~~~~~~gi~v 202 (342)
-.++.+.|++.||.+
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 237 IGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHHHCCCcc
Confidence 257888899888864
No 121
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=40.44 E-value=59 Score=26.11 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=20.8
Q ss_pred cchhhhHHHHHHHhCCeEEeccccc
Q 019368 185 RDVEAEIVPTCRELGIGIVAYGPLG 209 (342)
Q Consensus 185 ~~~~~~~~~~~~~~gi~v~a~~pl~ 209 (342)
+....++++.|++.||.+++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4445789999999999999987765
No 122
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=40.28 E-value=1.6e+02 Score=27.34 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcC
Q 019368 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (342)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg 117 (342)
+.-+++|+..-+.|+ .+|+|+. |++.+-.+++-. ..-+|+|......--....+.+.+.+ +. +.+-|
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~-----s~~~~~dv~~~s--~~PviaSHsn~ral~~h~RNltD~~i----~~-ia~~G 220 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL-----SERTFWDVLDIS--NAPVIASHSNARALCDHPRNLTDAQL----KA-IAETG 220 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC-----CHHHHHHHHHhc--CCCEEEeccChHHhcCCCCCCCHHHH----HH-HHHcC
Confidence 456889999999998 9999997 788888888753 23477787664322112223443333 22 22332
Q ss_pred CCcccEEEeecC---CCCCCHHHHHHHHHHHHHcCCccEEecCC
Q 019368 118 IDCIDLYYQHRV---DTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (342)
Q Consensus 118 ~d~iDl~~lH~p---~~~~~~~~~~~~L~~l~~~G~ir~iGvS~ 158 (342)
..|-+.+.-.. +....++++++.++.+.+..=+.++|+.+
T Consensus 221 -Gvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 221 -GVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred -CEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 12333332221 23456889999999999987799999975
No 123
>PRK05588 histidinol-phosphatase; Provisional
Probab=40.10 E-value=1.4e+02 Score=26.68 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCC---------cHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHH
Q 019368 38 PDMIALIHHAINSGITLLDTSDIYGPY---------TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRAC 108 (342)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g---------~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~ 108 (342)
....+.+++|.+.|+..+ .++|.... .-+..+- .++..+.-++.+-.-++.. ++ ....
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~-~i~~~~~~~I~~GiE~~~~----------~~-~~~~ 82 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFN-KYSKYRNNKLLLGIELGME----------KD-LIEE 82 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHH-HHHHHhcCCcceEEEeccc----------CC-CHHH
Confidence 457889999999999998 77663110 0112221 1222222344444444322 22 2355
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCC----------CHH----HHHHHHHHHHH-cCCccEEe
Q 019368 109 CEASLKRLDIDCIDLYYQHRVDTKI----------PIE----VTIGELKKLVE-EGKIKYIG 155 (342)
Q Consensus 109 ~~~SL~~Lg~d~iDl~~lH~p~~~~----------~~~----~~~~~L~~l~~-~G~ir~iG 155 (342)
+++.|++...||+ +.-+|+.+... +.+ .-++.+.++++ .|++.-+|
T Consensus 83 ~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 83 NKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 6777887777776 78899854211 222 23466666666 35554444
No 124
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=39.36 E-value=2.5e+02 Score=24.61 Aligned_cols=99 Identities=12% Similarity=0.250 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC------ccEEecCCC-cHHHHHHHHhcCCcce
Q 019368 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK------IKYIGLSEA-CAATIRRAHAVHPITA 175 (342)
Q Consensus 103 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~------ir~iGvS~~-~~~~l~~~~~~~~~~~ 175 (342)
......++..-+.-....++-+++-..+......|.+...++|.+.|. ..+-|+++. +.-+..+......|.+
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftI 155 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTI 155 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEE
Confidence 345556676666677778999999998888888999999999999997 345577764 3344455555566665
Q ss_pred eccccccCCcchhhhHHHHHHHhCCeEEeccc
Q 019368 176 VQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (342)
Q Consensus 176 ~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~p 207 (342)
+--+|+. +.-+=.|+.+||.-+++..
T Consensus 156 ItQ~FHc------eRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 156 ITQRFHC------ERALFIARQMGIDAICFAA 181 (235)
T ss_pred Eeccccc------HHHHHHHHHhCCceEEecC
Confidence 5444442 3456679999999888654
No 125
>PLN02428 lipoic acid synthase
Probab=39.30 E-value=3.4e+02 Score=25.75 Aligned_cols=157 Identities=15% Similarity=0.224 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----CCCCCCcHHHHHHHHhcCCCC--CCEEEEeeeccccCCCCCCCCCHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTS----DIYGPYTNEILVGKALKGGMR--ERVELATKFGISFADGGKIRGDPAYVRACC 109 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA----~~Yg~g~sE~~lG~al~~~~R--~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (342)
+.++..++.+.+.+.|++++=-. +.|-++..+ .+.+.++..++ ..+.|.. +.+.. ..+
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~-L~pdf------~~d-------- 194 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEA-LVPDF------RGD-------- 194 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEE-eCccc------cCC--------
Confidence 45566778888888898765432 123333343 33334433211 1232222 11110 111
Q ss_pred HHHHHHcCCCcccEEEeecCCC-----------CCCHHHHHHHHHHHHHc--CCcc-E---EecCCCcHHHHHHHHhc--
Q 019368 110 EASLKRLDIDCIDLYYQHRVDT-----------KIPIEVTIGELKKLVEE--GKIK-Y---IGLSEACAATIRRAHAV-- 170 (342)
Q Consensus 110 ~~SL~~Lg~d~iDl~~lH~p~~-----------~~~~~~~~~~L~~l~~~--G~ir-~---iGvS~~~~~~l~~~~~~-- 170 (342)
++.|+.|.-.-+|. +-|+++. ....++.++.|+.+++. |..- . +|+ +-+.+++.+.+..
T Consensus 195 ~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lr 272 (349)
T PLN02428 195 LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLR 272 (349)
T ss_pred HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHH
Confidence 33334443233566 4477654 13467889999999998 7653 2 577 4566666555443
Q ss_pred -CCcceecc-cc----------ccC-CcchhhhHHHHHHHhCCeEEecccccc
Q 019368 171 -HPITAVQL-EW----------SLW-SRDVEAEIVPTCRELGIGIVAYGPLGQ 210 (342)
Q Consensus 171 -~~~~~~q~-~~----------~~~-~~~~~~~~~~~~~~~gi~v~a~~pl~~ 210 (342)
..++++.+ +| +-+ .+.....+-+++.+.|...++.+||-.
T Consensus 273 elgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 273 AAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 45555433 22 111 111124677788888998888888875
No 126
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=39.29 E-value=1.5e+02 Score=25.30 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=28.4
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHH
Q 019368 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAAT 163 (342)
Q Consensus 111 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 163 (342)
+....++ +|.++||..++ .+..+.+.+......++.+|++++....
T Consensus 67 ~ia~~~~---~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 67 EIAEELG---LDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred HHHHhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 3344555 79999998652 2233444433334678899999875544
No 127
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=39.00 E-value=3.2e+02 Score=25.36 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~ 115 (342)
+.++..+.+.++.+.|++.|=.-- +. ..+.-.=+++++.- .++.|..=.. ..++.+... .++.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~vDaN--------~~~~~~~a~-----~~~~ 194 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLVIDAN--------ESYDLQDFP-----RLKE 194 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEEEECC--------CCCCHHHHH-----HHHH
Confidence 345566777778899999873211 11 12222233444322 2332222211 133454431 1344
Q ss_pred cCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHH
Q 019368 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVP 193 (342)
Q Consensus 116 Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~ 193 (342)
|. ..++.++-.|-. .+.++.+.+++++..+. ..|=|.++...+..+++....+++|+.....-.- ...++..
T Consensus 195 l~--~~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~ 268 (324)
T TIGR01928 195 LD--RYQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIE 268 (324)
T ss_pred Hh--hCCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHH
Confidence 42 246667776643 23457788888876664 5677889999999999999999999987764421 1258999
Q ss_pred HHHHhCCeEEeccccccc
Q 019368 194 TCRELGIGIVAYGPLGQG 211 (342)
Q Consensus 194 ~~~~~gi~v~a~~pl~~G 211 (342)
.|+.+|+.++..+.+..|
T Consensus 269 ~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 269 TCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHcCCeEEEcceEccc
Confidence 999999999987656544
No 128
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=38.97 E-value=1.5e+02 Score=26.77 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHcCC--------------------------CcccEEEeecCCCCCCH---HHHHHHHHHHHHcCCc
Q 019368 101 DPAYVRACCEASLKRLDI--------------------------DCIDLYYQHRVDTKIPI---EVTIGELKKLVEEGKI 151 (342)
Q Consensus 101 ~~~~i~~~~~~SL~~Lg~--------------------------d~iDl~~lH~p~~~~~~---~~~~~~L~~l~~~G~i 151 (342)
+.++ ++.++++|++.|. ...|+++|..|-...+. .++++-|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 3344 6778888888873 46789999998776654 478999999999988
Q ss_pred cEEecCCCcHHHHHHHHh
Q 019368 152 KYIGLSEACAATIRRAHA 169 (342)
Q Consensus 152 r~iGvS~~~~~~l~~~~~ 169 (342)
.|=+.+|+...+.+..+
T Consensus 191 -tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 -TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred -EEEEEeCCcHHhHhhCC
Confidence 67777787777665544
No 129
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=38.86 E-value=3.4e+02 Score=25.58 Aligned_cols=97 Identities=13% Similarity=0.004 Sum_probs=46.7
Q ss_pred CCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEE-Eeec-CCCC----CCHHHHHHHHHHHHHcCCcc
Q 019368 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLY-YQHR-VDTK----IPIEVTIGELKKLVEEGKIK 152 (342)
Q Consensus 79 R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~-~lH~-p~~~----~~~~~~~~~L~~l~~~G~ir 152 (342)
..++.|..|++..... ....+.+.. ..+-+-|+.+|+|+|++- ..|. +... .+.........++++.=.+.
T Consensus 202 G~d~~v~iRi~~~D~~--~~g~~~~e~-~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 278 (353)
T cd02930 202 GEDFIIIYRLSMLDLV--EGGSTWEEV-VALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIP 278 (353)
T ss_pred CCCceEEEEecccccC--CCCCCHHHH-HHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCC
Confidence 4466677777643110 012343433 234455677777777662 2231 1111 01111233344555554555
Q ss_pred EEecCC-CcHHHHHHHHhcCCcceecc
Q 019368 153 YIGLSE-ACAATIRRAHAVHPITAVQL 178 (342)
Q Consensus 153 ~iGvS~-~~~~~l~~~~~~~~~~~~q~ 178 (342)
-++.-. ++++.++++++....|.+++
T Consensus 279 Vi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 279 VIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred EEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 555544 36666777776666666654
No 130
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=38.71 E-value=2.4e+02 Score=24.38 Aligned_cols=132 Identities=11% Similarity=0.075 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----------CCCCCC--cHHHHHHHHhcCCCCCC--EEEEeeeccccCCCCCCCCC
Q 019368 36 PEPDMIALIHHAINSGITLLDTS----------DIYGPY--TNEILVGKALKGGMRER--VELATKFGISFADGGKIRGD 101 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA----------~~Yg~g--~sE~~lG~al~~~~R~~--~~I~tK~~~~~~~~~~~~~~ 101 (342)
+.++..+..+.+.+.|+..||-- +.||.. ...+.+-+.++.. |+. +-|+.|+...+ ...
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~~~~~v~vk~r~~~------~~~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REAVPIPVTVKIRLGW------DDE 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHhcCCCEEEEEeecc------CCc
Confidence 45677788888888999999842 346542 1234444545442 111 45677764332 111
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-C-HHHHHHHHHHHHHcCCccEEecCCC-cHHHHHHHHhcCCcceecc
Q 019368 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-P-IEVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQL 178 (342)
Q Consensus 102 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~-~-~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 178 (342)
+... .+-+.|+.+|+ |.+.+|...... . ....|+.+..+++.-.+.-++..+. +.+++.++++....+.+++
T Consensus 138 -~~~~-~~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 138 -EETL-ELAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred -hHHH-HHHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 1222 23344566675 556677653211 0 0123555566666555555555543 5666666666555565555
Q ss_pred c
Q 019368 179 E 179 (342)
Q Consensus 179 ~ 179 (342)
-
T Consensus 213 g 213 (231)
T cd02801 213 G 213 (231)
T ss_pred c
Confidence 3
No 131
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=38.63 E-value=1.1e+02 Score=30.39 Aligned_cols=123 Identities=19% Similarity=0.147 Sum_probs=79.2
Q ss_pred HHHHHHcCCCeEe--CCCCC---C-----CCcHHHHHHHHhcC---CCCCCEEEEeeeccccCCC-----------CCCC
Q 019368 44 IHHAINSGITLLD--TSDIY---G-----PYTNEILVGKALKG---GMRERVELATKFGISFADG-----------GKIR 99 (342)
Q Consensus 44 l~~A~~~Gi~~~D--TA~~Y---g-----~g~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~-----------~~~~ 99 (342)
+++.-+.|+.-+- ||-+| | .|.-|.++.-+-+. ..+..+++++-+|...... -...
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 188 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVE 188 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEEE
Confidence 4555567776553 66544 1 14455555444332 2567788888776543211 0011
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhc-CCccee--
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAV-- 176 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~-- 176 (342)
.++ .+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.+.++.+. ..++++
T Consensus 189 vd~-------~ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtD 254 (545)
T TIGR01228 189 VDE-------SRIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTD 254 (545)
T ss_pred ECH-------HHHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCC
Confidence 222 344578888998865 356899999999999999999999999888999988885 233433
Q ss_pred cccc
Q 019368 177 QLEW 180 (342)
Q Consensus 177 q~~~ 180 (342)
|...
T Consensus 255 QTSa 258 (545)
T TIGR01228 255 QTSA 258 (545)
T ss_pred CCcc
Confidence 5544
No 132
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=38.51 E-value=3e+02 Score=24.90 Aligned_cols=123 Identities=15% Similarity=0.060 Sum_probs=67.3
Q ss_pred CCCCCceeeCCCCCceeCcceeccccccCcCCCCCCHHHHHHHHHHHHH-cCC-------CeEeCCCCCCCCcHHHHHHH
Q 019368 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAIN-SGI-------TLLDTSDIYGPYTNEILVGK 72 (342)
Q Consensus 1 ~~~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~-~Gi-------~~~DTA~~Yg~g~sE~~lG~ 72 (342)
|.+|++...+|...+ -|+|.+||..+. +.+ ++..|++ .|. +-+|....- .+..+-+
T Consensus 1 ~~~~~d~l~i~g~~f-~SRL~lGTgky~-------s~~----~~~~ai~aSg~evvTvalRR~~~~~~~----~~~~~l~ 64 (267)
T CHL00162 1 MNNMTDKLKIGNKSF-NSRLMLGTGKYK-------SLK----DAIQSIEASGCEIVTVAIRRLNNNLLN----DNSNLLN 64 (267)
T ss_pred CCCCCCceEECCEEe-ecceEEecCCCC-------CHH----HHHHHHHHhCCcEEEEEEEEeccCcCC----CcchHHH
Confidence 556777777765444 389999998762 334 3444443 344 444542111 1233333
Q ss_pred HhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHc------CCCcccEEEeecCCCCC-CHHHHHHHHHHH
Q 019368 73 ALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL------DIDCIDLYYQHRVDTKI-PIEVTIGELKKL 145 (342)
Q Consensus 73 al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~L------g~d~iDl~~lH~p~~~~-~~~~~~~~L~~l 145 (342)
.+. ...+.+ +.... ...+.+.-.+-.+-+.+.+ +++.|-|=.+..+.... +..|++++-+.|
T Consensus 65 ~i~---~~~~~~---LPNTa-----Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~L 133 (267)
T CHL00162 65 GLD---WNKLWL---LPNTA-----GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFL 133 (267)
T ss_pred hhc---hhccEE---CCcCc-----CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHH
Confidence 343 223322 22111 1334544444444555555 57777766665555443 457899999999
Q ss_pred HHcCC
Q 019368 146 VEEGK 150 (342)
Q Consensus 146 ~~~G~ 150 (342)
+++|-
T Consensus 134 v~eGF 138 (267)
T CHL00162 134 VKKGF 138 (267)
T ss_pred HHCCC
Confidence 99986
No 133
>PRK05414 urocanate hydratase; Provisional
Probab=38.41 E-value=1.1e+02 Score=30.48 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=75.8
Q ss_pred HHHHHHcCCCeEe--CCCCC---C-----CCcHHHHHHHHhcC---CCCCCEEEEeeeccccCCC-----------CCCC
Q 019368 44 IHHAINSGITLLD--TSDIY---G-----PYTNEILVGKALKG---GMRERVELATKFGISFADG-----------GKIR 99 (342)
Q Consensus 44 l~~A~~~Gi~~~D--TA~~Y---g-----~g~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~-----------~~~~ 99 (342)
+.+.-+.|+.-+- ||-+| | .|.-|.++.-+-+. ..+.++++++-+|...... -...
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 197 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVE 197 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEEE
Confidence 4555567776553 66544 1 14455555544433 2577788888877543211 0011
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhc
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 170 (342)
.++ .+.-+|+.+.|+|.+ ...++++++..++.+++|+..+||+-..-++.+.++.+.
T Consensus 198 vd~-------~ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 198 VDE-------SRIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred ECH-------HHHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 222 344578888999865 356899999999999999999999999888989888876
No 134
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=38.21 E-value=1.7e+02 Score=26.23 Aligned_cols=108 Identities=18% Similarity=0.106 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHH--------------------HHhcCCCCCCEEEEeeeccccCC
Q 019368 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVG--------------------KALKGGMRERVELATKFGISFAD 94 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG--------------------~al~~~~R~~~~I~tK~~~~~~~ 94 (342)
.+.++..++.+.+-+.||.||=|.-.-. +-..+- +.+++ ....++|+|=..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~s----- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMS----- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCC-----
Confidence 4678889999999999998887654322 222221 11111 334466655432
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHH-HHHHHHHHHHcCCccEEecCCCcH
Q 019368 95 GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEV-TIGELKKLVEEGKIKYIGLSEACA 161 (342)
Q Consensus 95 ~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~-~~~~~-~~~~L~~l~~~G~ir~iGvS~~~~ 161 (342)
+.+.|+++++.-.++-+ -++.++|+.... .+.++ -+..|..|++.=- --||.|.|+.
T Consensus 124 ------tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~ 182 (241)
T PF03102_consen 124 ------TLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTD 182 (241)
T ss_dssp -------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SS
T ss_pred ------CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCC
Confidence 56777766666544443 699999998664 34443 3667777775522 4689999874
No 135
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=38.08 E-value=3.3e+02 Score=25.20 Aligned_cols=138 Identities=11% Similarity=0.063 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC---------CCCCCC---cHHHHHHHHhcCC-CCCCEEEEeeeccccCCCCCCCCCH
Q 019368 36 PEPDMIALIHHAINSGITLLDTS---------DIYGPY---TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDP 102 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA---------~~Yg~g---~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 102 (342)
+.++..+..+.+.+.|+..||.- +.|+.. ...+.+.+.++.. ..-.+-|+.|+...+. . ..
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~-----~-~~ 146 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD-----D-AH 146 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC-----C-Cc
Confidence 55777888888889999999852 123321 1235555555542 1123568888754321 1 11
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCccEEecCC-CcHHHHHHHHhcCCcceeccc
Q 019368 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLE 179 (342)
Q Consensus 103 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~--~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~ 179 (342)
..+ ..+-+.|+..|+ |.+.+|........ .-.|+.+.++++.=.+.-||... .++++++++++....+.+++-
T Consensus 147 ~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 147 INA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred chH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 112 235556777785 66667854322111 23477777777765677777666 477888888877777888775
Q ss_pred cccC
Q 019368 180 WSLW 183 (342)
Q Consensus 180 ~~~~ 183 (342)
-.++
T Consensus 223 R~~l 226 (319)
T TIGR00737 223 RGAL 226 (319)
T ss_pred hhhh
Confidence 4443
No 136
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=37.83 E-value=3.7e+02 Score=25.64 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeC--CCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHH
Q 019368 35 EPEPDMIALIHHAINSGITLLDT--SDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DT--A~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~S 112 (342)
.+.++..+.++.+.+.|++.|-- ...--. ..-..+-+.++..++.--.|..+.++ .+.+.+ +.
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~~e~l~~~i~~Ik~~~p~i~i~~g~---------lt~e~l-----~~ 168 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAK-VGVDYIRRALPIAREYFSSVSIEVQP---------LSEEEY-----AE 168 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CCHHHHHHHHHHHHHhCCCceeccCC---------CCHHHH-----HH
Confidence 47788888889999999997732 111110 12234444444321110012233332 244443 67
Q ss_pred HHHcCCCcccEEE----------eecCCCCCCHHHHHHHHHHHHHcCC
Q 019368 113 LKRLDIDCIDLYY----------QHRVDTKIPIEVTIGELKKLVEEGK 150 (342)
Q Consensus 113 L~~Lg~d~iDl~~----------lH~p~~~~~~~~~~~~L~~l~~~G~ 150 (342)
|+..|++.+-+.+ +|...+....++.+++++.+++.|.
T Consensus 169 Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~ 216 (371)
T PRK09240 169 LVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGI 216 (371)
T ss_pred HHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 8888988665543 2221234468899999999999985
No 137
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=37.76 E-value=1.9e+02 Score=28.40 Aligned_cols=86 Identities=7% Similarity=0.048 Sum_probs=57.4
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcchhhhHHHHHHHhCCe
Q 019368 123 LYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIG 201 (342)
Q Consensus 123 l~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 201 (342)
+.++-.|-+..+..+-++.+.++++...|. ..|-+.++...+..+++....+++|......--....++.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 445666644322112266777887776654 3466778899999999888888888876422111135889999999999
Q ss_pred EEecccc
Q 019368 202 IVAYGPL 208 (342)
Q Consensus 202 v~a~~pl 208 (342)
+..++..
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8776543
No 138
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=37.68 E-value=1.8e+02 Score=26.85 Aligned_cols=73 Identities=10% Similarity=0.010 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCc-cEEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHHHHhCCeEEecccccccc
Q 019368 140 GELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQGF 212 (342)
Q Consensus 140 ~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~G~ 212 (342)
+.+.++.++-.+ -..|=|-++...+.+++.....+++|+.....-.- .-.++.+.|+.+|+.++..+.+..|.
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 445555555333 24556667888888888887788888887764321 13588999999999999887666543
No 139
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=37.57 E-value=58 Score=22.36 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCHHHHH
Q 019368 249 RVNEIAMRKGCTPAQLA 265 (342)
Q Consensus 249 ~l~~ia~~~~~s~~q~a 265 (342)
.+++||+++|+|..++.
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999999875
No 140
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.55 E-value=3e+02 Score=24.82 Aligned_cols=103 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH------HHHHHHHHHHHH-cCCccEEecCCCcHHHHHHHHhcCCcce
Q 019368 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI------EVTIGELKKLVE-EGKIKYIGLSEACAATIRRAHAVHPITA 175 (342)
Q Consensus 103 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~------~~~~~~L~~l~~-~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 175 (342)
..-+..+-+.|.++|+++|.+-+.......... .+.++.+..+.+ +-++..+.-................++.
T Consensus 19 ~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~ 98 (266)
T cd07944 19 DEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDM 98 (266)
T ss_pred HHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCE
Q ss_pred eccccccCCcchhhhHHHHHHHhCCeEEec
Q 019368 176 VQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 176 ~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 205 (342)
+.+.+..-....-.+.+++++++|+.+...
T Consensus 99 iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 99 IRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred EEEecccccHHHHHHHHHHHHHCCCeEEEE
No 141
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=37.06 E-value=2.4e+02 Score=23.35 Aligned_cols=95 Identities=18% Similarity=0.077 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCC-CEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~ 114 (342)
+.+...++++.+++.|++-+-+.. .++-.+.+. ..+ ++-|..+++.... ....+...+.++.. +
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~-----~~~~~~~~~~a~~a-~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTG-----LTTTEVKVAEVEEA-I 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCC-----CCcHHHHHHHHHHH-H
Confidence 567889999999999998887664 333333333 233 5667777765421 01134444444444 4
Q ss_pred HcCCCcccEEEeecCC---CCCCHHHHHHHHHHHHHc
Q 019368 115 RLDIDCIDLYYQHRVD---TKIPIEVTIGELKKLVEE 148 (342)
Q Consensus 115 ~Lg~d~iDl~~lH~p~---~~~~~~~~~~~L~~l~~~ 148 (342)
++|.| .++++-|- .....+++.+.+.++.+.
T Consensus 76 ~~Gad---~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 76 DLGAD---EIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HcCCC---EEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 55754 44444331 111135556666655554
No 142
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=36.92 E-value=3.9e+02 Score=25.68 Aligned_cols=126 Identities=15% Similarity=0.171 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCC-----CCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHH
Q 019368 37 EPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG-----MRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (342)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~-----~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (342)
..+..+.|+.++++|+ ....|++..--..+-.|.++. +.+.++++.- |...+..
T Consensus 40 pp~i~~Al~~rvdhGv----fGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~-----------------VVpgi~~ 98 (388)
T COG1168 40 PPEIIEALRERVDHGV----FGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPG-----------------VVPGISL 98 (388)
T ss_pred CHHHHHHHHHHHhcCC----CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCc-----------------chHhHHH
Confidence 4678888999999996 344455321224444555541 3333333222 3334455
Q ss_pred HHHHcCCCcccEEEeecCCCC----------------------CCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHh
Q 019368 112 SLKRLDIDCIDLYYQHRVDTK----------------------IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA 169 (342)
Q Consensus 112 SL~~Lg~d~iDl~~lH~p~~~----------------------~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~ 169 (342)
.++.|- +-=|-+.++.|-.. ....=-++.||+....+.++.+=+||
T Consensus 99 ~I~~~T-~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCn----------- 166 (388)
T COG1168 99 AIRALT-KPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCN----------- 166 (388)
T ss_pred HHHHhC-cCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeC-----------
Confidence 555552 33466666666221 00111355666666666555444443
Q ss_pred cCCcceeccccccCCcc----hhhhHHHHHHHhCCeEEe
Q 019368 170 VHPITAVQLEWSLWSRD----VEAEIVPTCRELGIGIVA 204 (342)
Q Consensus 170 ~~~~~~~q~~~~~~~~~----~~~~~~~~~~~~gi~v~a 204 (342)
+.|+.-+- ...++.+.|+++||.||+
T Consensus 167 ---------PHNP~Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 167 ---------PHNPTGRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred ---------CCCCCCccccHHHHHHHHHHHHHcCCEEEe
Confidence 22332221 124788889999999887
No 143
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.56 E-value=3.3e+02 Score=24.71 Aligned_cols=125 Identities=12% Similarity=-0.014 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCC--------CCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHH-
Q 019368 35 EPEPDMIALIHHAINSGITLLDTSDIY--------GPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYV- 105 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Y--------g~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i- 105 (342)
.+.++..++.....+.||..|+....- -....++.+..+.+..++..+...+...... ....-+..+
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~----~~~~~p~~~~ 93 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV----GYRHYPDDVV 93 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc----CccCCCcHHH
Confidence 366778888888889999999987421 1222345554444433444454433321100 011123333
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEec-----CCCcHHHHHHHHh
Q 019368 106 RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL-----SEACAATIRRAHA 169 (342)
Q Consensus 106 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGv-----S~~~~~~l~~~~~ 169 (342)
+..++.+. ..|++.|-+ ..+..+++.+.+.++.+++.|+.-...+ +.++++.+.+.++
T Consensus 94 ~~di~~~~-~~g~~~iri-----~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~ 156 (275)
T cd07937 94 ELFVEKAA-KNGIDIFRI-----FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAK 156 (275)
T ss_pred HHHHHHHH-HcCCCEEEE-----eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHH
Confidence 33344433 445544333 2233447888889999999997433333 3466666555433
No 144
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=36.54 E-value=3.7e+02 Score=25.31 Aligned_cols=61 Identities=16% Similarity=0.052 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeec-CCCC--------CCHHHHH-HHHHHHHHcCCccEEecCCCcH
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTK--------IPIEVTI-GELKKLVEEGKIKYIGLSEACA 161 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~-p~~~--------~~~~~~~-~~L~~l~~~G~ir~iGvS~~~~ 161 (342)
..+.+.+++.++..+ +|+.+++.++.+.- |... .+.++.+ .+.+.|.+.|- ..+++|||..
T Consensus 161 gqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 161 LDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 457788888776644 58999988887653 2111 1112333 34556666685 5689988763
No 145
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=36.50 E-value=46 Score=29.64 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=47.8
Q ss_pred CCCceeCcceeccccccCcCCCCC--CHHHHHHHHHHH----HHcCCCeEeCCC--CCCCCcHHHHHHHHhcC-------
Q 019368 12 SQGLEVSAQGLGCMAMSCLYGPPE--PEPDMIALIHHA----INSGITLLDTSD--IYGPYTNEILVGKALKG------- 76 (342)
Q Consensus 12 ~tg~~vs~lglGt~~~g~~~~~~~--~~~~~~~~l~~A----~~~Gi~~~DTA~--~Yg~g~sE~~lG~al~~------- 76 (342)
.+|+++|.+||.+.+=- .+|+.. ..+++.+++.+| .++|||.|--|. .|=.-.+|....+++.+
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 58999999999987521 134432 345666676665 478999999885 33222245555555543
Q ss_pred CCCCCEEEEeeec
Q 019368 77 GMRERVELATKFG 89 (342)
Q Consensus 77 ~~R~~~~I~tK~~ 89 (342)
..+..|.++..+-
T Consensus 144 A~~aqV~lAvEiM 156 (287)
T COG3623 144 AARAQVMLAVEIM 156 (287)
T ss_pred HHhhccEEEeeec
Confidence 1566666666653
No 146
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=36.22 E-value=3.7e+02 Score=26.73 Aligned_cols=106 Identities=11% Similarity=-0.002 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CccEEecCC----C--cHHHHHHHHhcC
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSE----A--CAATIRRAHAVH 171 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~----~--~~~~l~~~~~~~ 171 (342)
..+++.|.+.++...++.|+.+ +.+...+.....+.+.+.++++++.| .--.+++++ . +.+ +.+++...
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~e-ll~~l~~a 296 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGF---FILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDAD-ILHLYRRA 296 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCE---EEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHH-HHHHHHHh
Confidence 3478889999998888888654 34444444444566777788888887 322344332 1 233 33333333
Q ss_pred CcceeccccccCCcc------------hhhhHHHHHHHhCCeEEecccc
Q 019368 172 PITAVQLEWSLWSRD------------VEAEIVPTCRELGIGIVAYGPL 208 (342)
Q Consensus 172 ~~~~~q~~~~~~~~~------------~~~~~~~~~~~~gi~v~a~~pl 208 (342)
.+..+++..--.+.. ...+.+..|+++||.+.+.-.+
T Consensus 297 G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 333333332222211 1136788899999987654333
No 147
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=36.10 E-value=3.6e+02 Score=25.08 Aligned_cols=91 Identities=13% Similarity=0.024 Sum_probs=52.2
Q ss_pred cEEEeecCCCCC-CHHHHHHHHHHHHHcCCccEEecCC---------CcHHHHHHHHhcCCcceeccccccCC--cchhh
Q 019368 122 DLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSE---------ACAATIRRAHAVHPITAVQLEWSLWS--RDVEA 189 (342)
Q Consensus 122 Dl~~lH~p~~~~-~~~~~~~~L~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~~~~~~~q~~~~~~~--~~~~~ 189 (342)
.-+.+=.=|+.. ..+.+.+.++.+++.|.++.+.+.+ .+.+.++.+.+......+.++.|-.. ...-.
T Consensus 138 ~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~ 217 (321)
T TIGR03822 138 WEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEAR 217 (321)
T ss_pred cEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHH
Confidence 334454445543 2456777888888888876554433 23344444444442223333433211 01123
Q ss_pred hHHHHHHHhCCeEEecccccccc
Q 019368 190 EIVPTCRELGIGIVAYGPLGQGF 212 (342)
Q Consensus 190 ~~~~~~~~~gi~v~a~~pl~~G~ 212 (342)
+-++.+++.||.+...+++..|.
T Consensus 218 ~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 218 AACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHHcCCEEEEEeeEeCCC
Confidence 66778889999999999998874
No 148
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=35.95 E-value=3.6e+02 Score=25.07 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHc-CCCeEe-CCC-CCCCCcHHHHHHHHh---cCC-CCCCEEEEeeeccccCCCCCCCCCHHHHHHH
Q 019368 36 PEPDMIALIHHAINS-GITLLD-TSD-IYGPYTNEILVGKAL---KGG-MRERVELATKFGISFADGGKIRGDPAYVRAC 108 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gi~~~D-TA~-~Yg~g~sE~~lG~al---~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~ 108 (342)
+.++..++++..-+. ||+-+- |.. -.- .+...+.+.+ ++. ....+-|.|+.... .+..+...
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~--~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~---------~p~rit~e 188 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLV--LSPRRLGDIMARLAAIDHVKIVRFHTRVPVA---------DPARVTPA 188 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCccc--CCHHHHHHHHHHHHhCCCccEEEEeCCCccc---------ChhhcCHH
Confidence 456677777766544 776542 211 000 0122233333 221 22335566665322 23334445
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC
Q 019368 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK 150 (342)
Q Consensus 109 ~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ 150 (342)
+-+.|++.|. . ..+.+|...+....+++.++++.|++.|.
T Consensus 189 ll~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 189 LIAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCC
Confidence 5556666663 2 35778876554445788999999999885
No 149
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=35.70 E-value=1.8e+02 Score=25.65 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHHcCC--------------------------CcccEEEeecCCCCCC---HHHHHHHHHHHHHcC
Q 019368 99 RGDPAYVRACCEASLKRLDI--------------------------DCIDLYYQHRVDTKIP---IEVTIGELKKLVEEG 149 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~--------------------------d~iDl~~lH~p~~~~~---~~~~~~~L~~l~~~G 149 (342)
+.+...+++.+++--++|+. ...+++.+..|..-.+ .....+.+.+++++|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 45566677777777777763 2234445544443333 346788999999999
Q ss_pred CccEEecCCCcHHHHHHHHhc
Q 019368 150 KIKYIGLSEACAATIRRAHAV 170 (342)
Q Consensus 150 ~ir~iGvS~~~~~~l~~~~~~ 170 (342)
+ .+=+|+|..+.++.+++.
T Consensus 184 r--~viFSSH~m~EvealCDr 202 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred c--EEEEecccHHHHHHhhhe
Confidence 8 788999999999999874
No 150
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=35.55 E-value=3.5e+02 Score=25.53 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeCCCCCCCCcHHHHHHHHhcCCC-CCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSG-ITLLDTSDIYGPYTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~G-i~~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL 113 (342)
+.++..+.-+.|-+.| .+|...|..++.|+.-..+-++++..+ --.+-+.--+| ..+.+. .+-|
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG---------~l~~eq-----~~~L 150 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG---------MLTEEQ-----AEKL 150 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC---------CCCHHH-----HHHH
Confidence 5556666666777899 889998888873344444555554421 11132322233 223333 3456
Q ss_pred HHcCCCcccEEEeecCCC----------CCCHHHHHHHHHHHHHcCCcc----EEecCCCcHHHHHHHHhcCCcc-eecc
Q 019368 114 KRLDIDCIDLYYQHRVDT----------KIPIEVTIGELKKLVEEGKIK----YIGLSEACAATIRRAHAVHPIT-AVQL 178 (342)
Q Consensus 114 ~~Lg~d~iDl~~lH~p~~----------~~~~~~~~~~L~~l~~~G~ir----~iGvS~~~~~~l~~~~~~~~~~-~~q~ 178 (342)
+.-|+|+ +-|+.+. ...+++-++.|+.+++.|.=- -+|+-+-..+++..+....... +-.+
T Consensus 151 ~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsV 226 (335)
T COG0502 151 ADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSV 226 (335)
T ss_pred HHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCee
Confidence 7778776 4565443 345789999999999998732 2466555555555444442222 4455
Q ss_pred ccccCCc
Q 019368 179 EWSLWSR 185 (342)
Q Consensus 179 ~~~~~~~ 185 (342)
++|.+.+
T Consensus 227 PIn~l~P 233 (335)
T COG0502 227 PINFLNP 233 (335)
T ss_pred eeeeecC
Confidence 5555554
No 151
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=35.47 E-value=1e+02 Score=26.58 Aligned_cols=73 Identities=15% Similarity=0.065 Sum_probs=46.4
Q ss_pred hHHHHHHHhCCeEEe-cccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 019368 190 EIVPTCRELGIGIVA-YGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAW 268 (342)
Q Consensus 190 ~~~~~~~~~gi~v~a-~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~ 268 (342)
+--+..+++||.++. +-.-++|...+........++ + ..+..+...+.+..+-+.++++++++.+.|+..
T Consensus 123 ~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~-~--------~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 123 RHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEA-R--------VLAKVEAIYDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred hHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHH-H--------HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455667899999988 666677776522111111000 0 112344556667777888999999999999887
Q ss_pred HHh
Q 019368 269 VHH 271 (342)
Q Consensus 269 ~l~ 271 (342)
.+.
T Consensus 194 a~~ 196 (200)
T cd01075 194 AEE 196 (200)
T ss_pred HHH
Confidence 664
No 152
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=34.15 E-value=2.2e+02 Score=27.71 Aligned_cols=103 Identities=19% Similarity=0.288 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCCeEeCCCCCCC-CcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCc
Q 019368 42 ALIHHAINSGITLLDTSDIYGP-YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDC 120 (342)
Q Consensus 42 ~~l~~A~~~Gi~~~DTA~~Yg~-g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~ 120 (342)
.+++++++.| .+-..-.||. |.--..|.+.|...-...+.-.+-+ ..+-+++++.++++.++++...
T Consensus 37 ~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv----------~~gvkdlr~i~e~a~~~~~~gr 104 (436)
T COG2256 37 KPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV----------TSGVKDLREIIEEARKNRLLGR 104 (436)
T ss_pred chHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc----------cccHHHHHHHHHHHHHHHhcCC
Confidence 4688888887 3444556764 5567788888876333333222211 2367889999999988887544
Q ss_pred ccEEEe---ecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcH
Q 019368 121 IDLYYQ---HRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACA 161 (342)
Q Consensus 121 iDl~~l---H~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~ 161 (342)
==+++| |+.+ +..-++|.-.+++|.|-.||-++-++
T Consensus 105 ~tiLflDEIHRfn-----K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 105 RTILFLDEIHRFN-----KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred ceEEEEehhhhcC-----hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 445554 5554 34578888999999999999887443
No 153
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=33.73 E-value=1.9e+02 Score=28.41 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCCeEeCCCCC---------CCCcHHHHHHHHhcCC---CCCCEEEEeeeccccCCCCCCCCCHHHHHHHH
Q 019368 42 ALIHHAINSGITLLDTSDIY---------GPYTNEILVGKALKGG---MRERVELATKFGISFADGGKIRGDPAYVRACC 109 (342)
Q Consensus 42 ~~l~~A~~~Gi~~~DTA~~Y---------g~g~sE~~lG~al~~~---~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (342)
+.++...+.|+|.+.-+-.- +.+.+.+-+-++++.. .-..+.+.-=+|.. ..+.+.+.+.+
T Consensus 153 e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP-------gqt~e~~~~tl 225 (453)
T PRK13347 153 EMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP-------HQTVESFRETL 225 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC-------CCCHHHHHHHH
Confidence 45566666799888644322 2222333333444331 11223222223432 45788888877
Q ss_pred HHHHHHcCCCcccEEEe-ecCCC---------C-C-CHHH----HHHHHHHHHHcCCccEEecCCCcHH
Q 019368 110 EASLKRLDIDCIDLYYQ-HRVDT---------K-I-PIEV----TIGELKKLVEEGKIKYIGLSEACAA 162 (342)
Q Consensus 110 ~~SL~~Lg~d~iDl~~l-H~p~~---------~-~-~~~~----~~~~L~~l~~~G~ir~iGvS~~~~~ 162 (342)
+..+ .|+.++|.++.+ |-|.. . . ..++ ...+.+.|.+.|- ..+|+++|...
T Consensus 226 ~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far~ 292 (453)
T PRK13347 226 DKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFALP 292 (453)
T ss_pred HHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeCC
Confidence 7665 689999999865 33321 0 1 1222 2245667778886 55999998653
No 154
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=33.69 E-value=3e+02 Score=25.70 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC----------CCCCCCC--cHHHHHHHHhcCC---CCCCEEEEeeeccccCCCCCCCC
Q 019368 36 PEPDMIALIHHAINSGITLLDT----------SDIYGPY--TNEILVGKALKGG---MRERVELATKFGISFADGGKIRG 100 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DT----------A~~Yg~g--~sE~~lG~al~~~---~R~~~~I~tK~~~~~~~~~~~~~ 100 (342)
+.+...+.-+.+-+.|+..||- ...+|.. .....+.+.++.. -. ++-|+.|+-..+.+
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~------ 149 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDD------ 149 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCc------
Confidence 4466777888888999999993 2233322 2456777777652 22 67899998665421
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC--HHHHHHHHHHHHHcCC-ccEEecCC-CcHHHHHHHHhcCCccee
Q 019368 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP--IEVTIGELKKLVEEGK-IKYIGLSE-ACAATIRRAHAVHPITAV 176 (342)
Q Consensus 101 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~--~~~~~~~L~~l~~~G~-ir~iGvS~-~~~~~l~~~~~~~~~~~~ 176 (342)
.+.....+.+.++.-| +|.+.+|.-..... -..-|+.+.++++.=. |--||=.+ ++.+...+.++....+-+
T Consensus 150 -~~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgV 225 (323)
T COG0042 150 -DDILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGV 225 (323)
T ss_pred -ccccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEE
Confidence 1123345667777777 68899997644321 1145788888888755 55555444 688888888888777777
Q ss_pred ccc
Q 019368 177 QLE 179 (342)
Q Consensus 177 q~~ 179 (342)
++-
T Consensus 226 Mig 228 (323)
T COG0042 226 MIG 228 (323)
T ss_pred EEc
Confidence 663
No 155
>TIGR00035 asp_race aspartate racemase.
Probab=33.68 E-value=2.5e+02 Score=24.57 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCC------------CCHHHHHHHHHHHHHcCCccEEecCCCcHHH
Q 019368 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTK------------IPIEVTIGELKKLVEEGKIKYIGLSEACAAT 163 (342)
Q Consensus 101 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~------------~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 163 (342)
+.+..++-++..-.+.+-++++.+.+++|+.. .+...+.+.++.|.+.| +..|-++..+...
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 45666666667767888899999999998542 12234666777776654 7888888776655
No 156
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.46 E-value=2e+02 Score=27.54 Aligned_cols=85 Identities=11% Similarity=0.135 Sum_probs=56.3
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcCCccEEe-----cC--CCcHHHHHHHHh---cC------Cccee
Q 019368 124 YYQHRVDTK-----------IPIEVTIGELKKLVEEGKIKYIG-----LS--EACAATIRRAHA---VH------PITAV 176 (342)
Q Consensus 124 ~~lH~p~~~-----------~~~~~~~~~L~~l~~~G~ir~iG-----vS--~~~~~~l~~~~~---~~------~~~~~ 176 (342)
+-||.|+.. -+++++++++.+..++.. |.|- +. |.+.++..++.+ .. +..++
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 679999653 357889999998866533 2332 22 556665555444 34 56888
Q ss_pred ccccccCCcc----h----hhhHHHHHHHhCCeEEeccccc
Q 019368 177 QLEWSLWSRD----V----EAEIVPTCRELGIGIVAYGPLG 209 (342)
Q Consensus 177 q~~~~~~~~~----~----~~~~~~~~~~~gi~v~a~~pl~ 209 (342)
.++||+.... + -....+.++++||.+......+
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G 351 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERG 351 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCC
Confidence 9999986432 1 1356777889999999887665
No 157
>PRK07094 biotin synthase; Provisional
Probab=33.35 E-value=2.4e+02 Score=26.09 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----CCCCCCcHHHHHHHHhcCCCC-CCEEEEeeeccccCCCCCCCCCHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTS----DIYGPYTNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACCE 110 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA----~~Yg~g~sE~~lG~al~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (342)
+.++..+.++.+.+.|++.|--. +.|. ...+-+.++.... ..+.+..-.+ ..+.+. -
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~----~~~l~~l~~~i~~~~~l~i~~~~g---------~~~~e~-----l 132 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYT----DEKIADIIKEIKKELDVAITLSLG---------ERSYEE-----Y 132 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCC----HHHHHHHHHHHHccCCceEEEecC---------CCCHHH-----H
Confidence 66778888888889999877422 2232 2333344443222 2343332222 123332 2
Q ss_pred HHHHHcCCCcccEEE-------eecCCCCCCHHHHHHHHHHHHHcCC
Q 019368 111 ASLKRLDIDCIDLYY-------QHRVDTKIPIEVTIGELKKLVEEGK 150 (342)
Q Consensus 111 ~SL~~Lg~d~iDl~~-------lH~p~~~~~~~~~~~~L~~l~~~G~ 150 (342)
+.|+..|.+.+-+-+ +.........++.+++++.+++.|.
T Consensus 133 ~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi 179 (323)
T PRK07094 133 KAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGY 179 (323)
T ss_pred HHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Confidence 346667765443211 0011122346677788888888775
No 158
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.26 E-value=3.3e+02 Score=24.26 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=34.3
Q ss_pred EecCCC-----cHHHHHHHHhcCCcceecccccc-------CCcchhhhHHHHHHHhCCeEEeccccccc
Q 019368 154 IGLSEA-----CAATIRRAHAVHPITAVQLEWSL-------WSRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (342)
Q Consensus 154 iGvS~~-----~~~~l~~~~~~~~~~~~q~~~~~-------~~~~~~~~~~~~~~~~gi~v~a~~pl~~G 211 (342)
+|+|++ +..+..+.+....++.+++..+. +......++.+.++++||.+.++.|...+
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 455553 34444444555667777663211 11111256888999999999998876543
No 159
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=33.25 E-value=40 Score=23.05 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHH----HHcCCCeEeC-----CCCCCCCcHHHHHH
Q 019368 36 PEPDMIALIHHA----INSGITLLDT-----SDIYGPYTNEILVG 71 (342)
Q Consensus 36 ~~~~~~~~l~~A----~~~Gi~~~DT-----A~~Yg~g~sE~~lG 71 (342)
++.+|.++++.| ++.|+.++|- .+.+- -|++||
T Consensus 15 ~~~tA~~IIrqAK~~lV~~G~~~Y~nkRlg~VP~~~---VEeiLG 56 (59)
T PF11372_consen 15 SESTARDIIRQAKALLVQKGFSFYNNKRLGRVPASA---VEEILG 56 (59)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccCCccCcccHHH---HHHHHC
Confidence 456788888887 5789998873 34433 466665
No 160
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.18 E-value=4.7e+02 Score=25.48 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=58.7
Q ss_pred CCCCCCCCcHHHHHHHHhcC----CCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCC-CcccEEEeecCCC
Q 019368 57 TSDIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI-DCIDLYYQHRVDT 131 (342)
Q Consensus 57 TA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~-d~iDl~~lH~p~~ 131 (342)
..-.|| .|+-|-+++++ .+.+-++|.|-+-.. .--+++..-+++.-++... ..+.++.++.|..
T Consensus 63 ~d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~--------iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 131 (435)
T cd01974 63 DAAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAE--------VIGDDLNAFIKNAKNKGSIPADFPVPFANTPSF 131 (435)
T ss_pred CceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHh--------hhhccHHHHHHHHHHhccCCCCCeEEEecCCCC
Confidence 345778 46777777765 245556777765432 1223344444433333311 1478999998876
Q ss_pred CCCH----HHHHHHHHH-HHH-------cCCccEEe-cCCC-c-HHHHHHHHhcCCcceec
Q 019368 132 KIPI----EVTIGELKK-LVE-------EGKIKYIG-LSEA-C-AATIRRAHAVHPITAVQ 177 (342)
Q Consensus 132 ~~~~----~~~~~~L~~-l~~-------~G~ir~iG-vS~~-~-~~~l~~~~~~~~~~~~q 177 (342)
.... +.++++|-+ +.. .+.|--|| ..+. . .+.|+++++...+.++.
T Consensus 132 ~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 132 VGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 5432 234444432 222 23355565 3322 3 57788888876666653
No 161
>KOG1908 consensus Ribonuclease inhibitor type leucine-rich repeat proteins [RNA processing and modification]
Probab=33.13 E-value=1.9e+02 Score=23.24 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhhccCCCCCCC
Q 019368 241 EHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASADAVKGDR 320 (342)
Q Consensus 241 ~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~~~~~~~~~~ 320 (342)
-...+.+.++++.|.+.++-+.....+-+-.... ..++-.+.|..-+.+|+-.+++.|+++++...+..-.
T Consensus 75 ids~Eii~AYkeACQk~nCap~aalekQig~Fh~---------~~d~R~d~L~LKGEkl~haq~EALEEiFKRlQF~tiD 145 (165)
T KOG1908|consen 75 IDSDEIIGAYKEACQKLNCAPIAALEKQIGEFHD---------LGDHRLDCLDLKGEKLDHAQCEALEEIFKRLQFKTID 145 (165)
T ss_pred ccHHHHHHHHHHHHHHccccchHHHHHHHHHHhc---------CcchhHHHHhcccccccHHHHHHHHHHHHHhhceeec
Confidence 3445778889999999998776655543322221 3345566777777799999999999999876666555
Q ss_pred CCCccccccCCCC
Q 019368 321 YPDGVTTYKDSDT 333 (342)
Q Consensus 321 ~~~~~~~~~~~~~ 333 (342)
| .+++-+.||
T Consensus 146 f---E~TfLDdDc 155 (165)
T KOG1908|consen 146 F---EQTFLDDDC 155 (165)
T ss_pred c---eeecccccc
Confidence 5 344444444
No 162
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=33.03 E-value=2.1e+02 Score=30.92 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHHcCC--------------------------CcccEEEeecCCCCCCH---HHHHHHHHHHHHcC
Q 019368 99 RGDPAYVRACCEASLKRLDI--------------------------DCIDLYYQHRVDTKIPI---EVTIGELKKLVEEG 149 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~--------------------------d~iDl~~lH~p~~~~~~---~~~~~~L~~l~~~G 149 (342)
+....++.+.++..|+.++. ....+++|..|....+. +.+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 44566788888888887762 35677888888766553 47999999999999
Q ss_pred CccEEecCCCcHHHHHHHHhcCC
Q 019368 150 KIKYIGLSEACAATIRRAHAVHP 172 (342)
Q Consensus 150 ~ir~iGvS~~~~~~l~~~~~~~~ 172 (342)
+ ++=+.+|+.++.+.++....
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhhhh
Confidence 9 89999999999999888644
No 163
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=32.95 E-value=1.2e+02 Score=29.75 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=8.6
Q ss_pred CeEEecccccccccC
Q 019368 200 IGIVAYGPLGQGFLS 214 (342)
Q Consensus 200 i~v~a~~pl~~G~l~ 214 (342)
-.+++..+=+.|.+.
T Consensus 317 ~~~iglG~gA~s~~~ 331 (453)
T PRK09249 317 CDLIGLGVSAISRIG 331 (453)
T ss_pred CeEEEECcCcccCCC
Confidence 455666666666554
No 164
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=32.72 E-value=4.4e+02 Score=25.03 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCcHHHHHHHHhcCCccee
Q 019368 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAV 176 (342)
Q Consensus 98 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~ 176 (342)
..++.+.. ..+-+.|.++|+++|.+- .|.. .+.-++.++.+.+.+. .+..+++....+.++.+.+.. .+.+
T Consensus 18 ~~~s~~~k-~~ia~~L~~~Gv~~IEvG---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i 89 (365)
T TIGR02660 18 VAFTAAEK-LAIARALDEAGVDELEVG---IPAM---GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAV 89 (365)
T ss_pred CCCCHHHH-HHHHHHHHHcCCCEEEEe---CCCC---CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEE
Confidence 34566655 446667999999888885 3322 2334667777776643 667777777788888777652 2333
Q ss_pred ccccccCC--------cchh------hhHHHHHHHhCCeEE
Q 019368 177 QLEWSLWS--------RDVE------AEIVPTCRELGIGIV 203 (342)
Q Consensus 177 q~~~~~~~--------~~~~------~~~~~~~~~~gi~v~ 203 (342)
.+-....+ ...+ .+.+++++++|+.+.
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 33222211 1111 367889999998754
No 165
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=32.71 E-value=4.6e+02 Score=25.23 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCCC--CcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHc
Q 019368 39 DMIALIHHAINSGITLLDTSDIYGP--YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (342)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DTA~~Yg~--g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~L 116 (342)
+..++++.|++.|+.-|=+...|.. +.++..+-+.++-..+-...|.+..-... ....+.+.+.++.+. ..
T Consensus 168 ~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~------~~e~~av~~~~~~a~-~~ 240 (415)
T cd01297 168 KMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG------DSILEALDELLRLGR-ET 240 (415)
T ss_pred HHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc------ccHHHHHHHHHHHHH-Hh
Confidence 4567788889999877766555533 34666776666543333555655553210 112333444443332 23
Q ss_pred CCCcccEEEeecCCCC----CCHHHHHHHHHHHHHcCC
Q 019368 117 DIDCIDLYYQHRVDTK----IPIEVTIGELKKLVEEGK 150 (342)
Q Consensus 117 g~d~iDl~~lH~p~~~----~~~~~~~~~L~~l~~~G~ 150 (342)
|. =+...|-.... ....++++.+++++.+|.
T Consensus 241 g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~ 275 (415)
T cd01297 241 GR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGL 275 (415)
T ss_pred CC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCC
Confidence 42 35666654332 235566777777777765
No 166
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=32.68 E-value=3.3e+02 Score=23.56 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=55.0
Q ss_pred HHcCCCcccEEEee-cCCCC-CC----HHHHHHHHHHHHH--cCCccEEecCCCcHHHHHHHHhcCCcceeccccccCCc
Q 019368 114 KRLDIDCIDLYYQH-RVDTK-IP----IEVTIGELKKLVE--EGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR 185 (342)
Q Consensus 114 ~~Lg~d~iDl~~lH-~p~~~-~~----~~~~~~~L~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~ 185 (342)
..-|.++||+---- +|... .+ ++.+...++.+++ .+. -+.|-++.++.++.+++. ..+++-.-.+. ..
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~-~~ 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGF-ED 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTT-SS
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccc-cc
Confidence 34589999986432 33221 12 2334555566654 233 577888999999999988 44443322222 11
Q ss_pred chhhhHHHHHHHhCCeEEecccc
Q 019368 186 DVEAEIVPTCRELGIGIVAYGPL 208 (342)
Q Consensus 186 ~~~~~~~~~~~~~gi~v~a~~pl 208 (342)
..++++.++++|..++.+---
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 468999999999999986443
No 167
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=32.64 E-value=3.4e+02 Score=26.70 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=54.7
Q ss_pred HHHHHHcCCCcccEEE-------eecCCCCCCHHHHHHHHHHHHHcCCccE----EecCCCcHHHHHHHHhc---CCcce
Q 019368 110 EASLKRLDIDCIDLYY-------QHRVDTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV---HPITA 175 (342)
Q Consensus 110 ~~SL~~Lg~d~iDl~~-------lH~p~~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~---~~~~~ 175 (342)
-+.+++.|..++-+=+ |.........+++.++++.+++.|.--. +|+-+.+.+.+++.++. ..++.
T Consensus 290 l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~ 369 (472)
T TIGR03471 290 LKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHT 369 (472)
T ss_pred HHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCc
Confidence 3445556655443321 2333334456788889999999987432 37777777777666554 33343
Q ss_pred eccccccCCcchhhhHHHHHHHhCCe
Q 019368 176 VQLEWSLWSRDVEAEIVPTCRELGIG 201 (342)
Q Consensus 176 ~q~~~~~~~~~~~~~~~~~~~~~gi~ 201 (342)
+ .++.+...+...+.+.++++|+-
T Consensus 370 ~--~~~~l~P~PGT~l~~~~~~~g~~ 393 (472)
T TIGR03471 370 I--QVSLAAPYPGTELYDQAKQNGWI 393 (472)
T ss_pred e--eeeecccCCCcHHHHHHHHCCCc
Confidence 3 34555555556888888888864
No 168
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=32.05 E-value=4.3e+02 Score=24.67 Aligned_cols=133 Identities=12% Similarity=0.125 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CCCCCCCC--cHHHHHHHHhcCCC-CCCEEEEeeeccccCCCCCCCCCH
Q 019368 36 PEPDMIALIHHAINSGITLLD----------TSDIYGPY--TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDP 102 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~D----------TA~~Yg~g--~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~ 102 (342)
+.++..+..+.+.+.|+..|| +...||.. ..-+.+.+.++... .-++-|+.|+...+.+ ..+.
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~----~~~~ 140 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP----LDSY 140 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC----cchH
Confidence 556777777778888999999 44456642 22344555555421 1145688898654311 1122
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCC-C---CC-----H-HHHHHHHHHHHHcC-CccEEecCC-CcHHHHHHHHhc
Q 019368 103 AYVRACCEASLKRLDIDCIDLYYQHRVDT-K---IP-----I-EVTIGELKKLVEEG-KIKYIGLSE-ACAATIRRAHAV 170 (342)
Q Consensus 103 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~-~---~~-----~-~~~~~~L~~l~~~G-~ir~iGvS~-~~~~~l~~~~~~ 170 (342)
+.. ..+-+.++..| +|.+.+|.-.. . .. . .--|+...++++.- .|--||.-+ ++.+.+.+.+.
T Consensus 141 ~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~- 215 (318)
T TIGR00742 141 EFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS- 215 (318)
T ss_pred HHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-
Confidence 222 23445566666 68889996532 0 00 0 11466676777654 566676555 46666666653
Q ss_pred CCcceecc
Q 019368 171 HPITAVQL 178 (342)
Q Consensus 171 ~~~~~~q~ 178 (342)
..+.+|+
T Consensus 216 -g~dgVMi 222 (318)
T TIGR00742 216 -HVDGVMV 222 (318)
T ss_pred -CCCEEEE
Confidence 3555555
No 169
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=31.61 E-value=2.2e+02 Score=25.01 Aligned_cols=75 Identities=17% Similarity=0.068 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCC-CCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYG-PYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~ 114 (342)
++++..++.+.+.+.|..|+=|+.-|+ .|.+.+.+....+. -+.++ ..|.... -.+.+...+-++.--.
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~--~IKasGG-------Irt~~~a~~~i~aGA~ 203 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRV--GVKASGG-------IRTLEDALAMIEAGAT 203 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCc--eEEeeCC-------cCCHHHHHHHHHcCcc
Confidence 667888999999999999999999885 34555554444333 22222 2232111 1256666666666666
Q ss_pred HcCCCc
Q 019368 115 RLDIDC 120 (342)
Q Consensus 115 ~Lg~d~ 120 (342)
++|+.+
T Consensus 204 riGtS~ 209 (221)
T PRK00507 204 RLGTSA 209 (221)
T ss_pred eEccCc
Confidence 666543
No 170
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.37 E-value=3.9e+02 Score=24.02 Aligned_cols=98 Identities=18% Similarity=0.109 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEE-EeecCCCC-CCHH----HHHHHHHHHHHc-CCccEEecCCCcHHHHHHHHhcCC
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLY-YQHRVDTK-IPIE----VTIGELKKLVEE-GKIKYIGLSEACAATIRRAHAVHP 172 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~-~lH~p~~~-~~~~----~~~~~L~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 172 (342)
.+++.+.+..++.+ .-|.++||+- .--+|+.. ...+ .+...++.+++. +. -+.+-++.++.++.+++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 45666655544443 5589999993 22234332 1222 255555666655 43 48888999999999998743
Q ss_pred cceeccccccCCcchhhhHHHHHHHhCCeEEec
Q 019368 173 ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 173 ~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 205 (342)
.-+ +..+... +.++++.++++|..++.+
T Consensus 97 ~iI--Nsis~~~---~~~~~~l~~~~~~~vV~m 124 (257)
T TIGR01496 97 DII--NDVSGGQ---DPAMLEVAAEYGVPLVLM 124 (257)
T ss_pred CEE--EECCCCC---CchhHHHHHHcCCcEEEE
Confidence 222 2233322 357889999999999884
No 171
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=31.33 E-value=4.6e+02 Score=24.81 Aligned_cols=152 Identities=10% Similarity=0.037 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHH--HHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNE--ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE--~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL 113 (342)
+.++..+.++.+.+.|++.|=.- .++...-+ .-.=+++++.--+++.|..=.. ..++.+... .+-+.|
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan--------~~~~~~~A~-~~~~~l 212 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA--------HWYSRADAL-RLGRAL 212 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC--------CCcCHHHHH-HHHHHh
Confidence 44667777888899999988652 22211001 1112233332222333322211 123443322 222333
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCc-HHHHHHHHhcCCcceeccccccCCcc-hhhh
Q 019368 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEAC-AATIRRAHAVHPITAVQLEWSLWSRD-VEAE 190 (342)
Q Consensus 114 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~-~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 190 (342)
+.+ ++.++-.|-+. . -++.+.+++++-.|. ..|=+-++ ..+++++++....+++|+..+..-.- .-.+
T Consensus 213 ~~~-----~l~~iEeP~~~---~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ 283 (368)
T cd03329 213 EEL-----GFFWYEDPLRE---A-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMK 283 (368)
T ss_pred hhc-----CCCeEeCCCCc---h-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHH
Confidence 433 45555555432 2 246677888875554 23444467 88899999888899999988865321 2358
Q ss_pred HHHHHHHhCCeEEecc
Q 019368 191 IVPTCRELGIGIVAYG 206 (342)
Q Consensus 191 ~~~~~~~~gi~v~a~~ 206 (342)
+.+.|+++|+.++.++
T Consensus 284 ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 284 TAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHcCCEEEEEC
Confidence 9999999999987643
No 172
>PTZ00081 enolase; Provisional
Probab=31.09 E-value=4.8e+02 Score=25.66 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC--CccEEec--CCCcHHHHHHHHhcCCcce
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGL--SEACAATIRRAHAVHPITA 175 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~ 175 (342)
.+++.+.+-+.+.++.+ +++++-.|-.. +-|+.+.+|.++- .+.-+|= +..++..+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 46666666666666655 46777776543 3456666666653 5555553 3456899999999988999
Q ss_pred eccccccCCcc-hhhhHHHHHHHhCCeEEe
Q 019368 176 VQLEWSLWSRD-VEAEIVPTCRELGIGIVA 204 (342)
Q Consensus 176 ~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a 204 (342)
+|+..|-+-.- ...++...|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 99988865422 134789999999998776
No 173
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=30.84 E-value=3.2e+02 Score=25.90 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEee
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQH 127 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH 127 (342)
.+.+.+.+.++..+ .|+.+++.++.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 35555555554333 3666666665544
No 174
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=30.78 E-value=4.6e+02 Score=24.88 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCC-cHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHH
Q 019368 35 EPEPDMIALIHHAINSGITLLDTSDIYGPY-TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g-~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL 113 (342)
.+.++..+.++.+.+.|++.|=--.--+.. ..-..+.+.++..+..--.+...++ ..+.+.+ +-|
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~---------~lt~e~~-----~~L 168 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQ---------PLNEEEY-----KKL 168 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCccccccc---------cCCHHHH-----HHH
Confidence 367889999999999999866422111110 1234455555542111001111222 1244444 678
Q ss_pred HHcCCCcccEEE----------eecCCCCCCHHHHHHHHHHHHHcCC
Q 019368 114 KRLDIDCIDLYY----------QHRVDTKIPIEVTIGELKKLVEEGK 150 (342)
Q Consensus 114 ~~Lg~d~iDl~~----------lH~p~~~~~~~~~~~~L~~l~~~G~ 150 (342)
+..|++.+-+.+ +|-..+....++.+++++.+++.|.
T Consensus 169 k~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~ 215 (366)
T TIGR02351 169 VEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM 215 (366)
T ss_pred HHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 888988765543 3322344468889999999999985
No 175
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.73 E-value=2.1e+02 Score=24.81 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCC
Q 019368 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (342)
Q Consensus 102 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~ 158 (342)
...+.+.+++.++.+|. ++.++ .+...+.++..+.++.+..+| +..|=++.
T Consensus 13 ~~~~~~g~~~~a~~~g~---~~~~~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~ 63 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGY---EVEIV--FDAQNDPEEQIEQIEQAISQG-VDGIIVSP 63 (257)
T ss_dssp HHHHHHHHHHHHHHHTC---EEEEE--EESTTTHHHHHHHHHHHHHTT-ESEEEEES
T ss_pred HHHHHHHHHHHHHHcCC---EEEEe--CCCCCCHHHHHHHHHHHHHhc-CCEEEecC
Confidence 45678888999999985 33333 334445677888899998887 66665543
No 176
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=30.71 E-value=3e+02 Score=26.09 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee-cCCCC-----------CC-HH---H-HHHHHHHHHHcCCccEEecCCCcH
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH-RVDTK-----------IP-IE---V-TIGELKKLVEEGKIKYIGLSEACA 161 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH-~p~~~-----------~~-~~---~-~~~~L~~l~~~G~ir~iGvS~~~~ 161 (342)
..+.+.+.+.++. +.+|+.+++.++.+. .|... .+ .+ + .-.+.+.|.+.|- ..+++|||..
T Consensus 163 gqt~~~~~~~l~~-~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa~ 240 (377)
T PRK08599 163 GQTIEDFKESLAK-ALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFAK 240 (377)
T ss_pred CCCHHHHHHHHHH-HHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeeeC
Confidence 4578888777766 466899998887543 22110 01 11 1 2235666677775 5688888863
No 177
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=30.55 E-value=69 Score=24.91 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCC
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGP 63 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~ 63 (342)
+...+.+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 5677889999999999999999999853
No 178
>PRK00077 eno enolase; Provisional
Probab=30.48 E-value=4.8e+02 Score=25.44 Aligned_cols=96 Identities=7% Similarity=0.017 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC--CccEEecC--CCcHHHHHHHHhcCCcce
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGLS--EACAATIRRAHAVHPITA 175 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~ 175 (342)
.+++...+.+.+.++. .++.++-.|-... -|+.+.+|.++- ++.-.|=- ..++..++++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 3555555555555544 4678888876533 355566666653 45544433 246899999999888999
Q ss_pred eccccccCCcc-hhhhHHHHHHHhCCeEEe
Q 019368 176 VQLEWSLWSRD-VEAEIVPTCRELGIGIVA 204 (342)
Q Consensus 176 ~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a 204 (342)
+|+..+-+-.- ...++..+|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 99988865432 135789999999998664
No 179
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=30.35 E-value=4.8e+02 Score=24.78 Aligned_cols=25 Identities=4% Similarity=0.109 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCC
Q 019368 35 EPEPDMIALIHHAINSGITLLDTSD 59 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~ 59 (342)
.+.++..++++..-+.||..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3667888999998899999999764
No 180
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=30.30 E-value=2.9e+02 Score=23.63 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCC--CCCCHHHHHHHHHHHHHcCCccEEecCCCcH--HHHHHHHhcCCcceecc
Q 019368 103 AYVRACCEASLKRLDIDCIDLYYQHRVD--TKIPIEVTIGELKKLVEEGKIKYIGLSEACA--ATIRRAHAVHPITAVQL 178 (342)
Q Consensus 103 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~--~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~ 178 (342)
..+...+.+.++..+..- +-+.+--.. ...........+..|++.|- .+.+.++.. ..+..+ ...+++.+=+
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l-~~l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYL-KRLPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHH-HhCCCCeEEE
Confidence 335566777777766542 222222222 12234455689999999997 567766533 233333 3345666655
Q ss_pred ccccCCc--------chhhhHHHHHHHhCCeEEec
Q 019368 179 EWSLWSR--------DVEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 179 ~~~~~~~--------~~~~~~~~~~~~~gi~v~a~ 205 (342)
..+++.. ..-..++..|+..|+.+++-
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 5444321 12246788999999998874
No 181
>COG1679 Predicted aconitase [General function prediction only]
Probab=30.20 E-value=5e+02 Score=24.93 Aligned_cols=101 Identities=15% Similarity=0.022 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCC---C---CCCCCCHHHHHHHHHHHHHH
Q 019368 42 ALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFAD---G---GKIRGDPAYVRACCEASLKR 115 (342)
Q Consensus 42 ~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~---~---~~~~~~~~~i~~~~~~SL~~ 115 (342)
-++-++...||-+|.-+.. .+-.+-+.||.++....---++.+..+.+.+.. + .+...+.+++ ..+.++
T Consensus 208 y~~G~~~~d~IP~~~~~~~-p~~d~lKalgAA~atsgavam~HvegvTPE~~~~~~~d~~e~i~i~~~d~----~da~~~ 282 (403)
T COG1679 208 YLAGEAAGDGIPYFRLALF-PSEDELKALGAAMATSGAVAMYHVEGVTPEARALAFGDKAEKIEIEREDI----DDAWER 282 (403)
T ss_pred HHHHHhccCCCCeeccCCC-CCHHHHHHHHHHHhhcCceeEEEecCCCcccccccccccCceeeeeHHHH----HHHHHH
Confidence 3455667889999994432 322355889999987555556666666665421 1 1112344444 444444
Q ss_pred c--CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 019368 116 L--DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG 149 (342)
Q Consensus 116 L--g~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G 149 (342)
| +-+-+|++++-+|- ..++|+...++.|+..+
T Consensus 283 l~~~~~epdli~iGcPH--aS~~E~~~la~~l~~r~ 316 (403)
T COG1679 283 LNTADGEPDLIALGCPH--ASLEELRRLAELLKGRK 316 (403)
T ss_pred hhcCCCCCCEEEeCCCC--CCHHHHHHHHHHHhccC
Confidence 4 34478999999984 45677777777777776
No 182
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=29.64 E-value=3e+02 Score=26.15 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=66.0
Q ss_pred CCCCEEEEeeecccc-----C---CCCCCCCCHHHHHHHHHHHHHHcCCC----cccEEEeecCCCCCCHHHHHHHHHHH
Q 019368 78 MRERVELATKFGISF-----A---DGGKIRGDPAYVRACCEASLKRLDID----CIDLYYQHRVDTKIPIEVTIGELKKL 145 (342)
Q Consensus 78 ~R~~~~I~tK~~~~~-----~---~~~~~~~~~~~i~~~~~~SL~~Lg~d----~iDl~~lH~p~~~~~~~~~~~~L~~l 145 (342)
.|..+-|+|.+|-.- . .|...+++...|..|+....+.++.. ---+++.-.=++..-++.+..+++-+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~ 178 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEII 178 (349)
T ss_pred CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhh
Confidence 566788888887432 1 23456899999999999999999863 22233333333333356778888877
Q ss_pred HHc-CC---ccEEecCCCc-HHHHHHHHhcCCcceeccccccCC
Q 019368 146 VEE-GK---IKYIGLSEAC-AATIRRAHAVHPITAVQLEWSLWS 184 (342)
Q Consensus 146 ~~~-G~---ir~iGvS~~~-~~~l~~~~~~~~~~~~q~~~~~~~ 184 (342)
.+. |. .|+|-||+-. ...|.++.+...-...++..|..+
T Consensus 179 ~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~n 222 (349)
T COG0820 179 NDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPN 222 (349)
T ss_pred cCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCC
Confidence 643 32 2778888765 566777765322233444444433
No 183
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=29.58 E-value=2e+02 Score=27.33 Aligned_cols=87 Identities=11% Similarity=0.216 Sum_probs=53.3
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHH-cCC---ccEEecC--CCcHHHHHHH---HhcCCcceecccccc
Q 019368 123 LYYQHRVDTK-----------IPIEVTIGELKKLVE-EGK---IKYIGLS--EACAATIRRA---HAVHPITAVQLEWSL 182 (342)
Q Consensus 123 l~~lH~p~~~-----------~~~~~~~~~L~~l~~-~G~---ir~iGvS--~~~~~~l~~~---~~~~~~~~~q~~~~~ 182 (342)
.+-||.+++. .+++++++++.+..+ .|. |+++=+. |.+.+++.++ +...+..++.++||+
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3679988743 236788888876644 443 3344332 3444555444 444556778889998
Q ss_pred CCcc----hh----hhHHHHHHHhCCeEEeccccc
Q 019368 183 WSRD----VE----AEIVPTCRELGIGIVAYGPLG 209 (342)
Q Consensus 183 ~~~~----~~----~~~~~~~~~~gi~v~a~~pl~ 209 (342)
.... +. ..+.++.+++|+.+......+
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G 332 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRG 332 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 6431 11 245666778899998876665
No 184
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=29.52 E-value=1.3e+02 Score=21.82 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 019368 241 EHNKKLFERVNEIAMRKGCTPAQLALAWVHH 271 (342)
Q Consensus 241 ~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~ 271 (342)
.+..+.+..|.++|++.+++..++|. |+|.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~-YAL~ 77 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCV-YALG 77 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHH-HHHH
Confidence 34567788999999999999999887 4443
No 185
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=29.51 E-value=4.8e+02 Score=24.52 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC
Q 019368 35 EPEPDMIALIHHAINSGITLLDTS 58 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA 58 (342)
.+.++..++++...+.||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 367889999999999999999995
No 186
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=29.47 E-value=67 Score=20.71 Aligned_cols=20 Identities=30% Similarity=0.047 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCCHHHHHHHH
Q 019368 249 RVNEIAMRKGCTPAQLALAW 268 (342)
Q Consensus 249 ~l~~ia~~~~~s~~q~al~~ 268 (342)
.++.+.++.|+|..++|-..
T Consensus 6 ~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 6 LVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHcCCCHHHHHHHh
Confidence 45556666677777766543
No 187
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=29.44 E-value=61 Score=29.07 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHH-HcCCccEEe-------cCCCcHHHHHHHHhcCCcceecc
Q 019368 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLV-EEGKIKYIG-------LSEACAATIRRAHAVHPITAVQL 178 (342)
Q Consensus 107 ~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~-~~G~ir~iG-------vS~~~~~~l~~~~~~~~~~~~q~ 178 (342)
..++..|+-.| +|||++=+-|-......+++++..-++. +.|.--+.| +.....+++.+.+....|+++.+
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEe
Confidence 45788888888 8999999998766554455554444444 334433333 12223344555555677888877
Q ss_pred ccccCCcchh--hhHHHHHHHhCCeEEe
Q 019368 179 EWSLWSRDVE--AEIVPTCRELGIGIVA 204 (342)
Q Consensus 179 ~~~~~~~~~~--~~~~~~~~~~gi~v~a 204 (342)
.-..+....+ ..++..+++.|..+++
T Consensus 104 SdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 104 SDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp --SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred cCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 6665544322 3678888888887766
No 188
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=29.32 E-value=1.7e+02 Score=26.08 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHH-HHHcCCccEEecCCC--------cHHHHHHHHhcCCcceec
Q 019368 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKK-LVEEGKIKYIGLSEA--------CAATIRRAHAVHPITAVQ 177 (342)
Q Consensus 107 ~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~-l~~~G~ir~iGvS~~--------~~~~l~~~~~~~~~~~~q 177 (342)
+.++.-|+-+| +|||.+=+-|-......+++++..-+ +++.|.--+.| -++ ..+++.+.+....|+++.
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IE 89 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAVE 89 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEEE
Confidence 45788888999 89999999987665545555554444 45556655556 211 112223344446788887
Q ss_pred cccccCCcchh--hhHHHHHHHhCCeEEe
Q 019368 178 LEWSLWSRDVE--AEIVPTCRELGIGIVA 204 (342)
Q Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~gi~v~a 204 (342)
+.-..+.-..+ ..+++.++++|..+.+
T Consensus 90 iS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 90 ISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 76665544322 3688888888888764
No 189
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=29.30 E-value=4.1e+02 Score=23.68 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH-cCCccEEecCCCcHHHHHHHHhcCCcceeccccccCC
Q 019368 106 RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE-EGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWS 184 (342)
Q Consensus 106 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~-~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~ 184 (342)
+..+-+.|.++|+++|.+- ....-+.-++.++++.+ ...++..+++....+.++.+.+. .++.+.+-++.-+
T Consensus 22 k~~i~~~L~~~Gv~~iE~g------~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~i~~~~s~ 94 (259)
T cd07939 22 KLAIARALDEAGVDEIEVG------IPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVHISIPVSD 94 (259)
T ss_pred HHHHHHHHHHcCCCEEEEe------cCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEEEEEecCH
Q ss_pred c--------------chhhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHH
Q 019368 185 R--------------DVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERV 250 (342)
Q Consensus 185 ~--------------~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (342)
. ..-.+.+++|+++|+.+. +++...+... .+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~-~~~~~~~~~~-----------------------------~~~~~~~ 144 (259)
T cd07939 95 IHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS-VGAEDASRAD-----------------------------PDFLIEF 144 (259)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-EeeccCCCCC-----------------------------HHHHHHH
Q ss_pred HHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCC
Q 019368 251 NEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLA 300 (342)
Q Consensus 251 ~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt 300 (342)
-+.+.+.|+.. ...+=-+|.-+|+++.+.+..+...++
T Consensus 145 ~~~~~~~G~~~------------i~l~DT~G~~~P~~v~~lv~~l~~~~~ 182 (259)
T cd07939 145 AEVAQEAGADR------------LRFADTVGILDPFTTYELIRRLRAATD 182 (259)
T ss_pred HHHHHHCCCCE------------EEeCCCCCCCCHHHHHHHHHHHHHhcC
No 190
>PF14502 HTH_41: Helix-turn-helix domain
Probab=28.95 E-value=56 Score=21.34 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCC--HHHHHHHHHHhcCCCe
Q 019368 248 ERVNEIAMRKGCT--PAQLALAWVHHQGDDV 276 (342)
Q Consensus 248 ~~l~~ia~~~~~s--~~q~al~~~l~~~~v~ 276 (342)
..+.++++++++| ..|-||+++-..+.|.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 4678889999887 6899999998887643
No 191
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.91 E-value=2.3e+02 Score=25.42 Aligned_cols=85 Identities=19% Similarity=0.114 Sum_probs=54.8
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCcceeccccccCCc-chhhhHHHHHHHhC
Q 019368 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 199 (342)
Q Consensus 121 iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~g 199 (342)
.++.++-.|-+ .+-++.+.++. .+.=-..|=|-++...+.++++....+++|+.....-. ..-.++.+.|+.+|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 34555555533 23455566555 33223556666777788888888888999988775432 12358899999999
Q ss_pred CeEEecccccc
Q 019368 200 IGIVAYGPLGQ 210 (342)
Q Consensus 200 i~v~a~~pl~~ 210 (342)
+.++..+-+..
T Consensus 228 i~~~~~~~~es 238 (263)
T cd03320 228 IPAVVSSALES 238 (263)
T ss_pred CCEEEEcchhh
Confidence 99988654443
No 192
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=28.78 E-value=68 Score=20.59 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccC
Q 019368 250 VNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSV 297 (342)
Q Consensus 250 l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~ 297 (342)
+++||+..|+|.+.+.- +|+.+. -++..+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVSr--~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR--VLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHHH--HHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHHH--HHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 67899999999988654 455442 3556677777777776665
No 193
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.77 E-value=4.9e+02 Score=24.35 Aligned_cols=148 Identities=18% Similarity=0.098 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC-CCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHc
Q 019368 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (342)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~L 116 (342)
++..+.+.++.+.|++.|=.=- +.....+.+ +++++ .. ++-|..=.. ..++.+... -++.|
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g--~~~l~lDaN--------~~~~~~~a~-----~~~~l 200 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP--DIPLMADAN--------SAYTLADIP-----LLKRL 200 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC--CCeEEEECC--------CCCCHHHHH-----HHHHh
Confidence 5567777888899998873311 111123333 33333 22 332222211 133444421 23444
Q ss_pred CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCc-cEEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHH
Q 019368 117 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPT 194 (342)
Q Consensus 117 g~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~ 194 (342)
+..++.++-.|-.. +-++.+.+++++-.+ -..|=|-++...+..+++....+++|+..+..-.- .-.++..+
T Consensus 201 --~~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~ 274 (354)
T cd03317 201 --DEYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDL 274 (354)
T ss_pred --hcCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHH
Confidence 23467777766432 235667777666443 35677778999999999988899999987765421 13578999
Q ss_pred HHHhCCeEEeccccc
Q 019368 195 CRELGIGIVAYGPLG 209 (342)
Q Consensus 195 ~~~~gi~v~a~~pl~ 209 (342)
|+.+|+.++..+...
T Consensus 275 A~~~gi~~~~g~~~e 289 (354)
T cd03317 275 CQEHGIPVWCGGMLE 289 (354)
T ss_pred HHHcCCcEEecCccc
Confidence 999999987654443
No 194
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=28.63 E-value=2.1e+02 Score=26.43 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=35.0
Q ss_pred eecCCCCCCHHHHHHHHHHHHHc--CC--ccEEecC--CCcH---HHHHHHHhcCCcceeccc
Q 019368 126 QHRVDTKIPIEVTIGELKKLVEE--GK--IKYIGLS--EACA---ATIRRAHAVHPITAVQLE 179 (342)
Q Consensus 126 lH~p~~~~~~~~~~~~L~~l~~~--G~--ir~iGvS--~~~~---~~l~~~~~~~~~~~~q~~ 179 (342)
+++|.....++.+++.|+.+.+. |. ++-.=|. |++. +.+.++++...++.+|+.
T Consensus 148 InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk 210 (296)
T COG0731 148 INRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKGINDDEEELEEYAELLERINPDFVELK 210 (296)
T ss_pred hcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEeccccCChHHHHHHHHHHHhcCCCeEEEe
Confidence 45565566789999999999995 43 2222222 4443 556666777777887764
No 195
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=28.56 E-value=1.4e+02 Score=17.84 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHH
Q 019368 245 KLFERVNEIAMRKGCTPAQLAL 266 (342)
Q Consensus 245 ~~~~~l~~ia~~~~~s~~q~al 266 (342)
+..+.+.++|++.|+|.+++.-
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHH
Confidence 4567899999999999888543
No 196
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=28.48 E-value=1.9e+02 Score=28.37 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQ 126 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~l 126 (342)
.+.+.+.+.++..++ |+.+++.++.+
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L 240 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNY 240 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecC
Confidence 356666665554433 66666666655
No 197
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=28.41 E-value=2.7e+02 Score=26.86 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCC--cc-EEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHHHHhCCeEEec
Q 019368 138 TIGELKKLVEEGK--IK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 138 ~~~~L~~l~~~G~--ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~ 205 (342)
-++.+.+|++.-. |. .-|-+.++...++.+++....+++|....-.-.- ...++.+.|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 4667777777644 22 2377788899999999998899999988765322 1358999999999998765
No 198
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=28.34 E-value=4.1e+02 Score=23.37 Aligned_cols=117 Identities=9% Similarity=0.043 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCC------CcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGP------YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACC 109 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~------g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (342)
+.++..++++...+.|+..|+....=.. -..++.+.+..+..+.-.+.+.++.+ .+.+
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------------~~~i---- 80 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------------EKGI---- 80 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------------hhhH----
Confidence 6788999999999999999997643221 12455555554443333333333221 2222
Q ss_pred HHHHHHcCCCcccEEEeecC---------CCCCCHHHHHHHHHHHHHcCCccEEec---CC--CcHHHHHHHHh
Q 019368 110 EASLKRLDIDCIDLYYQHRV---------DTKIPIEVTIGELKKLVEEGKIKYIGL---SE--ACAATIRRAHA 169 (342)
Q Consensus 110 ~~SL~~Lg~d~iDl~~lH~p---------~~~~~~~~~~~~L~~l~~~G~ir~iGv---S~--~~~~~l~~~~~ 169 (342)
+... ..|.+.+-++.-=.. +.+..++.+.++++.+++.|.--.+.+ +. ++.+.+.++.+
T Consensus 81 ~~a~-~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~ 153 (265)
T cd03174 81 ERAL-EAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAK 153 (265)
T ss_pred HHHH-hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHH
Confidence 2222 235444444432110 111135667788888888887544444 33 45555444433
No 199
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=28.30 E-value=3.2e+02 Score=25.18 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHc---CCCcccEE------EeecCCCCCCHHHHHHHHHHHHHcCCccE----EecCCCcHHHHHH
Q 019368 100 GDPAYVRACCEASLKRL---DIDCIDLY------YQHRVDTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRR 166 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~L---g~d~iDl~------~lH~p~~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~ 166 (342)
.+++.+.......++.+ |+.|+|+. .-+..+.....+.+.+++++.+++-.|+. .+..+.+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Q ss_pred HHh---------cCCcceeccccccCCcchhhhHHHHHHHhCCeEEec
Q 019368 167 AHA---------VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 167 ~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 205 (342)
..+ ...++..-.+... ....-..+++.|+++|+.+..+
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~-~~~~~~~~~~~A~~~g~~v~~H 192 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGF-PPEKFVRAFQRAREAGLRLTAH 192 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCC-CHHHHHHHHHHHHHCCCceEEe
No 200
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.16 E-value=4.6e+02 Score=23.85 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-ccEEec---------------------CCCc
Q 019368 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGL---------------------SEAC 160 (342)
Q Consensus 103 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGv---------------------S~~~ 160 (342)
..+...+++.-..-+---+=.+++-+|+. +.+.+.+..|.+.|- +--+|+ .+++
T Consensus 2 ~r~~~~F~~l~~~~~~a~i~yit~GdP~~----e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t 77 (265)
T COG0159 2 SRLDQKFAQLKAENRGALIPYVTAGDPDL----ETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVT 77 (265)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCH----HHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCC
Q ss_pred HHHHHHHHhc------CCcceeccccccCCcchhhhHHHHHHHhCC
Q 019368 161 AATIRRAHAV------HPITAVQLEWSLWSRDVEAEIVPTCRELGI 200 (342)
Q Consensus 161 ~~~l~~~~~~------~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi 200 (342)
.+...++++. .-+-+.+.-||++.+......++.|++.|+
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv 123 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV 123 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC
No 201
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=27.78 E-value=4.1e+02 Score=23.13 Aligned_cols=145 Identities=12% Similarity=-0.056 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC----CCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (342)
+..++.++++.|++.|+...|+ -+..+-.++.. ..+++++++-- ....+.++..+..
T Consensus 13 D~~~~~~~l~~al~~~~~~~~i--------i~~~l~p~m~~vG~~w~~gei~vaqe-----------~~as~~~~~~l~~ 73 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEI--------INGPLMDGMKVVGDLFGAGKMFLPQV-----------LKSARVMKAAVAY 73 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH--------HHHHHHHHHHHHHHHHccCCCcHHHH-----------HHHHHHHHHHHHH
Confidence 6788999999999998654442 12344444433 13444444311 2234445555555
Q ss_pred HHHHcCCC-----cccEEEeecCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCcHHHHHHHHhcCCcceeccccccCCc
Q 019368 112 SLKRLDID-----CIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR 185 (342)
Q Consensus 112 SL~~Lg~d-----~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~ 185 (342)
....|... .---+++-.+..+.+--...=.-.-|+..|. |-++|. +.+++.+.+.+...+++++.+.......
T Consensus 74 l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~-~vp~e~~v~~~~~~~~~~V~lS~~~~~~ 152 (213)
T cd02069 74 LEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGV-MVPIEKILEAAKEHKADIIGLSGLLVPS 152 (213)
T ss_pred HHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEccchhcc
Confidence 42222211 1112334444333222222222223456776 778886 4467777777777788888776665433
Q ss_pred ch-hhhHHHHHHHhCC
Q 019368 186 DV-EAEIVPTCRELGI 200 (342)
Q Consensus 186 ~~-~~~~~~~~~~~gi 200 (342)
.. -.++++.+++.+.
T Consensus 153 ~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 153 LDEMVEVAEEMNRRGI 168 (213)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 21 2578888888865
No 202
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.76 E-value=56 Score=25.64 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCC
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG 77 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~ 77 (342)
+.+.-.+++...++.|.+.-+.|..||- ++..|.+|++..
T Consensus 14 s~EfK~~aV~~~~~~g~sv~evA~e~gI--s~~tl~~W~r~y 53 (121)
T PRK09413 14 TTQEKIAIVQQSFEPGMTVSLVARQHGV--AASQLFLWRKQY 53 (121)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc--CHHHHHHHHHHH
Confidence 5566678899999999999999999998 999999999874
No 203
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.73 E-value=6.3e+02 Score=25.31 Aligned_cols=89 Identities=15% Similarity=0.267 Sum_probs=48.8
Q ss_pred ccEEEeecCCCCCC-HH---HHHHHHHHH---------------HHcCCccEEecCC------CcHHHHHHHHhcCCcce
Q 019368 121 IDLYYQHRVDTKIP-IE---VTIGELKKL---------------VEEGKIKYIGLSE------ACAATIRRAHAVHPITA 175 (342)
Q Consensus 121 iDl~~lH~p~~~~~-~~---~~~~~L~~l---------------~~~G~ir~iGvS~------~~~~~l~~~~~~~~~~~ 175 (342)
++++.+|.|..... .. .++++|-+. +..++|--||.++ .+...|+++++...+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 68999999966532 22 223322221 1235687888764 35567888888766665
Q ss_pred ecc----------------ccccCC-cchhhhHHHHHH-HhCCeEEeccccc
Q 019368 176 VQL----------------EWSLWS-RDVEAEIVPTCR-ELGIGIVAYGPLG 209 (342)
Q Consensus 176 ~q~----------------~~~~~~-~~~~~~~~~~~~-~~gi~v~a~~pl~ 209 (342)
+.+ .+|+.. +.....+-++.+ +.|++++...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 522 122211 111123444444 5689888777765
No 204
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=27.65 E-value=6.9e+02 Score=25.68 Aligned_cols=110 Identities=11% Similarity=-0.066 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeC--C------CCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHH
Q 019368 34 PEPEPDMIALIHHAINSGITLLDT--S------DIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYV 105 (342)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DT--A------~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i 105 (342)
+.+.++..++....-+.|+..+++ + --|-.....+.+-..-+..+.-.+......... ..+...++++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~----vg~~~ypddv 98 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNL----LGYRHYADDV 98 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcce----eccccCcHHH
Confidence 346677777777777889988887 2 222222233333333333455455444431100 0012234444
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc
Q 019368 106 RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 152 (342)
Q Consensus 106 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir 152 (342)
.+.+-+-....|+|.+-++ +...+++....+++..++.|+.-
T Consensus 99 v~~~v~~a~~~Gid~~rif-----d~lnd~~~~~~ai~~ak~~G~~~ 140 (593)
T PRK14040 99 VERFVERAVKNGMDVFRVF-----DAMNDPRNLETALKAVRKVGAHA 140 (593)
T ss_pred HHHHHHHHHhcCCCEEEEe-----eeCCcHHHHHHHHHHHHHcCCeE
Confidence 4444444455566554444 44455677888899999999853
No 205
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=27.53 E-value=4e+02 Score=25.21 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH 127 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH 127 (342)
..+.+.+.+.++..+ .|+.+++.++.+.
T Consensus 162 gqt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 162 NQTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 447788877777665 5888888887655
No 206
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=27.50 E-value=6.1e+02 Score=25.38 Aligned_cols=129 Identities=9% Similarity=0.079 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCCCcHH---HHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHH
Q 019368 37 EPDMIALIHHAINSGITLLDTSDIYGPYTNE---ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (342)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE---~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL 113 (342)
.-+.+.+....-+.|+ -|-...|.+ -.| .++.+++.+.......|...............+....+.++++.-+
T Consensus 211 ~~e~~~L~~~~~~~~l--~~rv~i~pG-ADEvg~~LlaRa~n~~~~~~P~v~v~Ys~~~g~~~vp~YEd~pl~esv~~hI 287 (497)
T PF13552_consen 211 AMEQRELEAYIEELGL--SDRVMIYPG-ADEVGLLLLARAYNEYKGYKPRVYVRYSSGNGADTVPPYEDRPLGESVKEHI 287 (497)
T ss_pred HHHHHHHHHHHHhcCC--CCceeeeCC-hhHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCccCCCCCCCCHHHHHHHHH
Confidence 3455555555556665 444444432 122 5666666553222222322222221112334555567889999999
Q ss_pred HHcCCC------cccE-EEeecCCCCC---------------CHHHHHHHHHHHHHcCCccE---EecCCCcHHHHHHHH
Q 019368 114 KRLDID------CIDL-YYQHRVDTKI---------------PIEVTIGELKKLVEEGKIKY---IGLSEACAATIRRAH 168 (342)
Q Consensus 114 ~~Lg~d------~iDl-~~lH~p~~~~---------------~~~~~~~~L~~l~~~G~ir~---iGvS~~~~~~l~~~~ 168 (342)
...|-. ..|+ +++|.|.... ...+....+++++++|+.-. +..+|-.-..|.+.+
T Consensus 288 ~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~VaiaDva~~NGad~~L~~~L 367 (497)
T PF13552_consen 288 RAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIADVAYANGADNALMELL 367 (497)
T ss_pred HhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEEEcCcCCCccHHHHHHH
Confidence 999853 3454 6788884432 34678888999999998433 233444444444443
No 207
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=27.47 E-value=5.2e+02 Score=24.25 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCC---------CCCCC--cHHHHHHHHhcCCCCCCE
Q 019368 35 EPEPDMIALIHHAINSGITLLDTSD---------IYGPY--TNEILVGKALKGGMRERV 82 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~---------~Yg~g--~sE~~lG~al~~~~R~~~ 82 (342)
.+.++..+++...-+.|+..|+.+. .||.. ..++.+.++.+..++..+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~ 79 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKV 79 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEE
Confidence 3678889999998899999999851 22221 245556555555444333
No 208
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=27.17 E-value=1.7e+02 Score=27.11 Aligned_cols=133 Identities=13% Similarity=0.105 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CCCCCCCC--cHHHHHHHHhcCC-CCCCEEEEeeeccccCCCCCCCCCH
Q 019368 36 PEPDMIALIHHAINSGITLLD----------TSDIYGPY--TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDP 102 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~D----------TA~~Yg~g--~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 102 (342)
+.+...+....+.+.|+..|| +...||.+ .....+.+.++.. ..-.+-|+.|+-... +.+.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~------~~~~ 137 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW------DDSP 137 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC------T--C
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc------ccch
Confidence 456677777777778999999 33455543 2345666666542 112256777776543 2234
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCccEEecCC-CcHHHHHHHHhcCCcceecc
Q 019368 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQL 178 (342)
Q Consensus 103 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~--~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~ 178 (342)
+.+.+ +-+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++.+.+.+.++....+-+++
T Consensus 138 ~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 138 EETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp HHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred hHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 44433 555777777 799999986444322 45678888877775555554433 35566666555444444443
No 209
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=27.04 E-value=80 Score=23.32 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCccEEecCCC
Q 019368 136 EVTIGELKKLVEEGKIKYIGLSEA 159 (342)
Q Consensus 136 ~~~~~~L~~l~~~G~ir~iGvS~~ 159 (342)
.....+|..|+++|.|..+-+...
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~~ 48 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVRY 48 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESSS
T ss_pred HHHHHHHHHHHHCCCccceEEEec
Confidence 678899999999999987777554
No 210
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=26.97 E-value=1.5e+02 Score=29.00 Aligned_cols=102 Identities=16% Similarity=0.085 Sum_probs=66.1
Q ss_pred cHHHHHHHHhcC---CCCCCEEEEeeeccccCCC-------CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC
Q 019368 65 TNEILVGKALKG---GMRERVELATKFGISFADG-------GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP 134 (342)
Q Consensus 65 ~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~-------~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~ 134 (342)
.-|.++..+-+. ..+.+++++.-+|...... ...... ++-.-.+.-+||.+.|+|.. ...
T Consensus 149 TyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~---vevd~srI~~Rl~t~y~d~~-------a~~ 218 (561)
T COG2987 149 TYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIA---VEVDESRIDKRLRTGYLDEI-------AET 218 (561)
T ss_pred hHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEE---EEeCHHHHHHHHhcchhhhh-------cCC
Confidence 345555444332 3677888888776543211 000000 01112333467888998853 456
Q ss_pred HHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhc-CCccee
Q 019368 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAV 176 (342)
Q Consensus 135 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 176 (342)
++|+++-.++..++|+-.+||+-..-++.+.++++. ..+|++
T Consensus 219 ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 219 LDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 899999999999999999999999999999998886 344544
No 211
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.86 E-value=5.4e+02 Score=24.20 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEee---------cCCCCCCHHHHHHHHHHHHHcCCccEEecCC---CcHHHHH
Q 019368 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQH---------RVDTKIPIEVTIGELKKLVEEGKIKYIGLSE---ACAATIR 165 (342)
Q Consensus 98 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH---------~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~ 165 (342)
+.++.+.+ ..+-+.|.+.|+++|.+-+.- .+.. .+..+.++.+.+.+ ...+...+.. .+.+.++
T Consensus 20 ~~f~~~~~-~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQV-RAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC-CCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHH
Confidence 45666666 446666999999888885321 1111 12233444443322 2344443321 2456676
Q ss_pred HHHhcCCcceeccccccCCcchhhhHHHHHHHhCCeEEec
Q 019368 166 RAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 166 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 205 (342)
.+.+. .++.+.+-.+.-....-.+.+++++++|..+...
T Consensus 96 ~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 66554 3455554444333222357888889999876653
No 212
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.53 E-value=4.6e+02 Score=23.25 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCc---HHHHHHHHh
Q 019368 36 PEPDMIALIHHAINSGITLLDTSDIYGPYT---NEILVGKAL 74 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~---sE~~lG~al 74 (342)
+.++..++++.|.+.|++-+=..+||-.|+ ++..+.+.+
T Consensus 18 s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~ 59 (254)
T COG4464 18 SLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKA 59 (254)
T ss_pred cHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHH
Confidence 778999999999999999776666665442 344444443
No 213
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=26.21 E-value=1.7e+02 Score=22.47 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=32.3
Q ss_pred cCCCcHHHHHHHHhcCCcceeccccccCCcchhhhHHHHHHHhCCeEEeccc
Q 019368 156 LSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (342)
Q Consensus 156 vS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~p 207 (342)
.+.-+.+++..+....+++++-+--..-.+....++.++++++||++-.+..
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 3444556666655543456555543332233346899999999999988754
No 214
>PLN02681 proline dehydrogenase
Probab=26.11 E-value=6.5e+02 Score=24.88 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCC-eEeCCCCCCCCcHHHHHHHHhcCCC----CCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHH
Q 019368 40 MIALIHHAINSGIT-LLDTSDIYGPYTNEILVGKALKGGM----RERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (342)
Q Consensus 40 ~~~~l~~A~~~Gi~-~~DTA~~Yg~g~sE~~lG~al~~~~----R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~ 114 (342)
..+++++|.+.|++ +||.=..|-..--..+.-+..+..+ +.-|+++-..... -+.+.+...++.+.+
T Consensus 222 l~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~yN~~~~~~~V~~T~QaYLk--------~t~~~l~~~l~~a~~ 293 (455)
T PLN02681 222 LQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREFNKGKDRPIVYGTYQAYLK--------DARERLRLDLERSER 293 (455)
T ss_pred HHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHhccccCCCcEEEEEeCccc--------cCHHHHHHHHHHHHh
Confidence 56788889999998 6786665533223333444444433 3446666665443 267778777776654
Q ss_pred H---cCC-----CcccE-----EEeecCCCCCC-H---HHHH-HHHHHHHH---cCCccEEecCCCcHHHHHHHHhc---
Q 019368 115 R---LDI-----DCIDL-----YYQHRVDTKIP-I---EVTI-GELKKLVE---EGKIKYIGLSEACAATIRRAHAV--- 170 (342)
Q Consensus 115 ~---Lg~-----d~iDl-----~~lH~p~~~~~-~---~~~~-~~L~~l~~---~G~ir~iGvS~~~~~~l~~~~~~--- 170 (342)
. +|+ -|+|- -.+.||++-.+ . +..+ ..++.+.+ .|. -++.|.+|+..-+..+.+.
T Consensus 294 ~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~~~~ 372 (455)
T PLN02681 294 EGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAKMNE 372 (455)
T ss_pred cCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHHHHH
Confidence 2 221 13221 11223333211 1 1222 33333443 244 3788999998876655443
Q ss_pred CCc--ceeccccccCCcchhhhHHHHHHHhCCeEEecccccc
Q 019368 171 HPI--TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQ 210 (342)
Q Consensus 171 ~~~--~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~ 210 (342)
..+ .-..+.|..+.. +.+.+.....+.|..|.-|-|++.
T Consensus 373 ~gi~~~~~~veF~qL~G-M~d~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 373 LGLHKGDPRVQFAQLLG-MSDNLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred cCCCCCCCCEEEeccCC-CCHHHHHHHHhcCCCEEEEeeccC
Confidence 111 111333333332 123555556677988888888874
No 215
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=25.89 E-value=4.5e+02 Score=22.94 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHH
Q 019368 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~ 114 (342)
.+.++..++++.|.+.|+.-+=..+.| -....+.|+. ..+-|+|=++.+.. ..+.+.-...+++.+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----v~~a~~~l~~---~~v~v~tVigFP~G-----~~~~~~K~~E~~~Av- 80 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----VPLAKELLKG---TEVRICTVVGFPLG-----ASTTDVKLYETKEAI- 80 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----HHHHHHHcCC---CCCeEEEEeCCCCC-----CCcHHHHHHHHHHHH-
Confidence 478899999999999998777766655 2444555543 36777777776542 223333334455544
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc
Q 019368 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE 148 (342)
Q Consensus 115 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~ 148 (342)
++|.|-||+++-...-.....+.+.+.+.+.++.
T Consensus 81 ~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 81 KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEA 114 (211)
T ss_pred HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHH
Confidence 4799999998876544445567777777777664
No 216
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=25.86 E-value=6.1e+02 Score=24.52 Aligned_cols=109 Identities=13% Similarity=0.042 Sum_probs=58.9
Q ss_pred CCCCCCcHHHHHHHHhcC----CCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcC-CCcccEEEeecCCCCC
Q 019368 59 DIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD-IDCIDLYYQHRVDTKI 133 (342)
Q Consensus 59 ~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg-~d~iDl~~lH~p~~~~ 133 (342)
..|| .|+-|-+++++ .+.+-++|.|-+.... --++++.-+++.-++.. -..+.++.+|.|....
T Consensus 61 ~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l--------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g 129 (428)
T cd01965 61 AVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTET--------IGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKG 129 (428)
T ss_pred eeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhh--------cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCC
Confidence 4567 46667777765 2444567777664321 12233333333322211 0236788888887664
Q ss_pred CH----HHHHHHHHHH-------HHcCCccEEecCCC---cHHHHHHHHhcCCcceecc
Q 019368 134 PI----EVTIGELKKL-------VEEGKIKYIGLSEA---CAATIRRAHAVHPITAVQL 178 (342)
Q Consensus 134 ~~----~~~~~~L~~l-------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~q~ 178 (342)
.. +.++++|-+. ++.++|--||-++. +.+.|+++++...+.++.+
T Consensus 130 ~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 130 SHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred cHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 32 2344444332 23356777876653 3677888888766666543
No 217
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=25.71 E-value=5e+02 Score=23.48 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=51.8
Q ss_pred CHH-HHHHHHHHHHHcCCCeEeCCCCCCC-CcHH---HHHHHHhcCC-CCCCEEEEeeeccccCCCCCCCCCHHHHHHHH
Q 019368 36 PEP-DMIALIHHAINSGITLLDTSDIYGP-YTNE---ILVGKALKGG-MRERVELATKFGISFADGGKIRGDPAYVRACC 109 (342)
Q Consensus 36 ~~~-~~~~~l~~A~~~Gi~~~DTA~~Yg~-g~sE---~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (342)
+++ +..++.+.|.++|..|+=|+.-|+. |-+. +++-+.+++. ...+ +-.|.... --+.+....-+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG-------Irt~~~A~~~i 214 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG-------VRTAEDAAQYL 214 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC-------CCCHHHHHHHH
Confidence 344 5888999999999999999999974 3222 4444444321 0122 33443211 22678888889
Q ss_pred HHHHHHcCCCccc
Q 019368 110 EASLKRLDIDCID 122 (342)
Q Consensus 110 ~~SL~~Lg~d~iD 122 (342)
+.--+.||.++++
T Consensus 215 ~ag~~~lg~~~~~ 227 (257)
T PRK05283 215 ALADEILGADWAD 227 (257)
T ss_pred HHHHHHhChhhcC
Confidence 9999999988876
No 218
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=25.69 E-value=2.9e+02 Score=25.85 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=15.5
Q ss_pred hhhHHHHHHHhCCeEEec
Q 019368 188 EAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 188 ~~~~~~~~~~~gi~v~a~ 205 (342)
+..++.+|.++||++++=
T Consensus 174 e~Sil~~Ay~~~VPIf~P 191 (316)
T PRK02301 174 DSGILAAAYECDVPVYCP 191 (316)
T ss_pred CCcHHHHHHHcCCCEECC
Confidence 468999999999998874
No 219
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=25.63 E-value=3e+02 Score=21.48 Aligned_cols=59 Identities=19% Similarity=0.124 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHhhccCCCCHHHHHHHHhhhcc
Q 019368 245 KLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASA 313 (342)
Q Consensus 245 ~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l~a~~~~Lt~~~~~~i~~~~~~ 313 (342)
+.+..+.+..++++++..+.|.-- =..+++++++...+..++.++++++++.|-.....
T Consensus 55 e~i~~~~~~L~~~~L~k~E~~~i~----------Nl~P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i~~ 113 (118)
T smart00657 55 EIVRAVRTLLKSKKLHKFEIAQLG----------NLRPETAEEAQLLIPSLEERIDEEELEELLDDLSS 113 (118)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh----------CCCCCCHHHHHHHhhhhhccCCHHHHHHHHHHHHH
Confidence 345566666677899988876521 13456899999999999888999999988776654
No 220
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.61 E-value=4.9e+02 Score=26.01 Aligned_cols=100 Identities=8% Similarity=0.048 Sum_probs=56.8
Q ss_pred HHHHHHHHhcC----CCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH----HH
Q 019368 66 NEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI----EV 137 (342)
Q Consensus 66 sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~----~~ 137 (342)
+++-|-+++++ .+.+-++|.|-+. .+-|-..++...+.++.+.++++.++.|...... +.
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~ 136 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADR 136 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHH
Confidence 56677777764 2444455655542 3334444455555555546899999998765432 22
Q ss_pred HHHHHHH-H----------HHcCCccEEecCCC------cHHHHHHHHhcCCcceec
Q 019368 138 TIGELKK-L----------VEEGKIKYIGLSEA------CAATIRRAHAVHPITAVQ 177 (342)
Q Consensus 138 ~~~~L~~-l----------~~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~q 177 (342)
+++++-+ + .+.+.|--||.++. +...|+++++...+.++.
T Consensus 137 al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 137 TLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 3332221 1 12345777888762 446677777776666554
No 221
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=25.55 E-value=2.3e+02 Score=27.03 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.0
Q ss_pred hhhHHHHHHHhCCeEEec
Q 019368 188 EAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 188 ~~~~~~~~~~~gi~v~a~ 205 (342)
-..+++.|+++||.++.-
T Consensus 60 L~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 60 LRPLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHHHhCCCCEEEe
Confidence 357899999999999875
No 222
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=25.43 E-value=5.1e+02 Score=25.37 Aligned_cols=63 Identities=27% Similarity=0.418 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCC-ccEEecCCC---cHHHHHHHHhc----CCcceeccccccCCcchhhhHHHHHHHhCCeEE
Q 019368 139 IGELKKLVEEGK-IKYIGLSEA---CAATIRRAHAV----HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIV 203 (342)
Q Consensus 139 ~~~L~~l~~~G~-ir~iGvS~~---~~~~l~~~~~~----~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 203 (342)
...++.++++|. ++++.+.+- ..+.+++.++. ..++.+......+.+ -+++...|++.||.++
T Consensus 145 ~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~P--v~EI~~icr~~~v~v~ 215 (428)
T KOG1549|consen 145 LDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQP--VKEIVKICREEGVQVH 215 (428)
T ss_pred hHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcccccc--HHHHHHHhCcCCcEEE
Confidence 444555556664 466666643 23344444433 112222222222222 3566667777766554
No 223
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.41 E-value=2e+02 Score=24.91 Aligned_cols=88 Identities=10% Similarity=0.114 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCC-CcHHHHHHHHhcCCcceeccc
Q 019368 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLE 179 (342)
Q Consensus 101 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~ 179 (342)
+++... .+-+.|.+-|+..+-+-+ -. .+.++.+++++++..=-.||.-+ .+.++++++.+..- ++-
T Consensus 14 ~~~~a~-~ia~al~~gGi~~iEit~---~t-----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA----~Fi 80 (201)
T PRK06015 14 DVEHAV-PLARALAAGGLPAIEITL---RT-----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS----RFI 80 (201)
T ss_pred CHHHHH-HHHHHHHHCCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC----CEE
Confidence 444443 345556666765444433 11 23455666666553324588877 48888888877532 222
Q ss_pred cccCCcchhhhHHHHHHHhCCeEEe
Q 019368 180 WSLWSRDVEAEIVPTCRELGIGIVA 204 (342)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~gi~v~a 204 (342)
.++. .+.+++++|+++||.++.
T Consensus 81 vSP~---~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 VSPG---TTQELLAAANDSDVPLLP 102 (201)
T ss_pred ECCC---CCHHHHHHHHHcCCCEeC
Confidence 3332 246899999999999776
No 224
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=25.38 E-value=4.3e+02 Score=22.53 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEE-eecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcH--HHHHHHHhcCCcceecc
Q 019368 102 PAYVRACCEASLKRLDIDCIDLYY-QHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACA--ATIRRAHAVHPITAVQL 178 (342)
Q Consensus 102 ~~~i~~~~~~SL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~ 178 (342)
.+.....+...++..+..--.+++ +...........+.+.+..+++.|- .+++.++.. ..+..+ ...+++++=+
T Consensus 97 ~~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l-~~~~~d~iKl 173 (240)
T cd01948 97 DPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYL-KRLPVDYLKI 173 (240)
T ss_pred CcHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHH-HhCCCCEEEE
Confidence 344567788888888865423322 2222333345568899999999998 677776532 333333 3334566655
Q ss_pred ccccCCcc--------hhhhHHHHHHHhCCeEEecc
Q 019368 179 EWSLWSRD--------VEAEIVPTCRELGIGIVAYG 206 (342)
Q Consensus 179 ~~~~~~~~--------~~~~~~~~~~~~gi~v~a~~ 206 (342)
..+.+..- .-..++..|+..|+.+++-.
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 54433221 12467888999999988743
No 225
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=25.34 E-value=4.9e+02 Score=23.21 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCC-CCCC-C-cHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHH
Q 019368 36 PEPDMIALIHHAINSGITLLDTSD-IYGP-Y-TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~-~Yg~-g-~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~S 112 (342)
+.+|+ ..|++.|..+||.=+ .-|. | ....++.+.... -....-+|..+|-. ...+..+..+....
T Consensus 9 ~~~EA----~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~-~~~~~pvSAtiGDl-------p~~p~~~~~aa~~~ 76 (235)
T PF04476_consen 9 NVEEA----EEALAGGADIIDLKNPAEGALGALFPWVIREIVAA-VPGRKPVSATIGDL-------PMKPGTASLAALGA 76 (235)
T ss_pred CHHHH----HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHH-cCCCCceEEEecCC-------CCCchHHHHHHHHH
Confidence 44554 347789999999743 2221 1 234455444333 33346678887754 23455555444443
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHH----HHHHHHcCCccEEecCCC------cHHHHHHHHhcCCcceecccc--
Q 019368 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGE----LKKLVEEGKIKYIGLSEA------CAATIRRAHAVHPITAVQLEW-- 180 (342)
Q Consensus 113 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~----L~~l~~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~q~~~-- 180 (342)
- .-|+||+-+=+.-..+... .-+.++. +.+.-.+.++-..+.+.+ ++..+-++.....++.+++.-
T Consensus 77 a-~~GvdyvKvGl~g~~~~~~-a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~ 154 (235)
T PF04476_consen 77 A-ATGVDYVKVGLFGCKDYDE-AIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTAD 154 (235)
T ss_pred H-hcCCCEEEEecCCCCCHHH-HHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 3 4589998887664433211 1222322 222223345667788776 345566666666777777643
Q ss_pred ----ccCCcc---hhhhHHHHHHHhCCe
Q 019368 181 ----SLWSRD---VEAEIVPTCRELGIG 201 (342)
Q Consensus 181 ----~~~~~~---~~~~~~~~~~~~gi~ 201 (342)
++++.- .-.++++.|+++|+.
T Consensus 155 Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~ 182 (235)
T PF04476_consen 155 KDGGSLFDHLSEEELAEFVAQARAHGLM 182 (235)
T ss_pred CCCCchhhcCCHHHHHHHHHHHHHccch
Confidence 222221 124678888888875
No 226
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=25.34 E-value=1.4e+02 Score=25.29 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEec
Q 019368 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL 156 (342)
Q Consensus 107 ~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGv 156 (342)
.+++++|..- .-++++++.........+-++.|..+..+|++|++-+
T Consensus 67 ~~f~~~L~e~---sn~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nL 113 (173)
T PF10171_consen 67 QSFEDALLEA---SNDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNL 113 (173)
T ss_pred HHHHHHHHHH---hCceeccChhhcCchHHHHHHHHHHHhcCCceEEeee
Confidence 3445555444 3578888876666667788999999999999998643
No 227
>PRK10551 phage resistance protein; Provisional
Probab=24.68 E-value=5e+02 Score=25.99 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=64.4
Q ss_pred CEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEE-eecCCCCCCHHHHHHHHHHHHHcCCccEEecCCC
Q 019368 81 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYY-QHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA 159 (342)
Q Consensus 81 ~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~ 159 (342)
...|+-.+... .+..+.+...+.+.++.++....-+.+ +........ .+..+.++.|++.|- .|.+.+|
T Consensus 349 ~~~lsINis~~-------~l~~~~f~~~l~~~l~~~~~~~~~LvlEItE~~~~~~-~~~~~~l~~Lr~~G~--~ialDDF 418 (518)
T PRK10551 349 GAKLGINISPA-------HLHSDSFKADVQRLLASLPADHFQIVLEITERDMVQE-EEATKLFAWLHSQGI--EIAIDDF 418 (518)
T ss_pred CcEEEEEeCHH-------HHCCchHHHHHHHHHHhCCCCcceEEEEEechHhcCC-HHHHHHHHHHHHCCC--EEEEECC
Confidence 45555555443 233455667788899988875433322 222221122 456688899999998 5655554
Q ss_pred cH--HHHHHHHhcCCcceeccccccCCc--------chhhhHHHHHHHhCCeEEec
Q 019368 160 CA--ATIRRAHAVHPITAVQLEWSLWSR--------DVEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 160 ~~--~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~~~~~~~~~gi~v~a~ 205 (342)
.. ..+..+ ...+++.+=+.-+.... ..-..+++.|++.|+.+++=
T Consensus 419 Gtg~ssl~~L-~~l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 419 GTGHSALIYL-ERFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred CCCchhHHHH-HhCCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 32 222222 22345555444332221 12246899999999998874
No 228
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=24.31 E-value=6e+02 Score=23.85 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=15.2
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeC
Q 019368 35 EPEPDMIALIH-------HAINSGITLLDT 57 (342)
Q Consensus 35 ~~~~~~~~~l~-------~A~~~Gi~~~DT 57 (342)
.+.++..++++ +|.++|+..|+-
T Consensus 142 mt~~eI~~ii~~f~~aA~~a~~aGfDgVei 171 (338)
T cd02933 142 LTTEEIPGIVADFRQAARNAIEAGFDGVEI 171 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45566555554 456789998885
No 229
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=24.10 E-value=2e+02 Score=28.75 Aligned_cols=123 Identities=21% Similarity=0.185 Sum_probs=70.1
Q ss_pred HHHHHHcCCCeEe--CCCCC---CC-----CcHHHHHHHHhc---CCCCCCEEEEeeeccccCC--------C---CCCC
Q 019368 44 IHHAINSGITLLD--TSDIY---GP-----YTNEILVGKALK---GGMRERVELATKFGISFAD--------G---GKIR 99 (342)
Q Consensus 44 l~~A~~~Gi~~~D--TA~~Y---g~-----g~sE~~lG~al~---~~~R~~~~I~tK~~~~~~~--------~---~~~~ 99 (342)
.++....|+.-+- ||..| |. |.-|.++.-+-+ ...+.++++++=+|..... + -...
T Consensus 108 f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vE 187 (546)
T PF01175_consen 108 FERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVE 187 (546)
T ss_dssp HHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEEE
T ss_pred HHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEEE
Confidence 5566678887664 66655 21 334444433322 2378889999888754311 0 0112
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhc-CCccee--
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAV-- 176 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~-- 176 (342)
.++ .+.-+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-++.++++.+. ..++++
T Consensus 188 vd~-------~ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tD 253 (546)
T PF01175_consen 188 VDP-------SRIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTD 253 (546)
T ss_dssp S-H-------HHHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE--
T ss_pred ECH-------HHHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccC
Confidence 223 3445677788999763 45899999999999999999999999888888888876 233433
Q ss_pred cccc
Q 019368 177 QLEW 180 (342)
Q Consensus 177 q~~~ 180 (342)
|...
T Consensus 254 QTS~ 257 (546)
T PF01175_consen 254 QTSA 257 (546)
T ss_dssp -SST
T ss_pred CCcc
Confidence 5544
No 230
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.92 E-value=4e+02 Score=27.83 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCccEEecCCCcHHHHHHHHhcCCcceecc
Q 019368 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAVQL 178 (342)
Q Consensus 101 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 178 (342)
+.+.|++-+++....-.....-+++|+..+... .+.+++|.+..++ +.+..|.++|.....+.-+.. -|.++
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS----RCq~f 178 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS----RCLQF 178 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH----HHHhc
Confidence 456666666554443333456789998887654 4567777777777 889999999976554433333 23444
Q ss_pred ccccCCc
Q 019368 179 EWSLWSR 185 (342)
Q Consensus 179 ~~~~~~~ 185 (342)
.+..+..
T Consensus 179 ~f~~ls~ 185 (700)
T PRK12323 179 NLKQMPP 185 (700)
T ss_pred ccCCCCh
Confidence 5555443
No 231
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=23.88 E-value=3.7e+02 Score=23.77 Aligned_cols=113 Identities=21% Similarity=0.142 Sum_probs=62.3
Q ss_pred ceeccccccCcCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcC--C-------CCCCEEEEeeecc
Q 019368 20 QGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--G-------MRERVELATKFGI 90 (342)
Q Consensus 20 lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~-------~R~~~~I~tK~~~ 90 (342)
+.-|...| +.+...++++.|-..|-+|+|-|.. -.++..+..- . ..+.++-+.|.|.
T Consensus 17 VIsGLnNF--------d~~~V~~i~~AA~~ggAt~vDIAad------p~LV~~~~~~s~lPICVSaVep~~f~~aV~AGA 82 (242)
T PF04481_consen 17 VISGLNNF--------DAESVAAIVKAAEIGGATFVDIAAD------PELVKLAKSLSNLPICVSAVEPELFVAAVKAGA 82 (242)
T ss_pred heeCcccc--------CHHHHHHHHHHHHccCCceEEecCC------HHHHHHHHHhCCCCeEeecCCHHHHHHHHHhCC
Confidence 45565554 6788899999999999999999873 4555544322 1 1222222222221
Q ss_pred ccC-----CC---CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC
Q 019368 91 SFA-----DG---GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK 150 (342)
Q Consensus 91 ~~~-----~~---~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ 150 (342)
.-- +. ....++.+.|.+-.++..+.|= |+.+---....-++++..+--++|++.|-
T Consensus 83 dliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP----~~~LsVTVPHiL~ld~Qv~LA~~L~~~Ga 146 (242)
T PF04481_consen 83 DLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLP----DITLSVTVPHILPLDQQVQLAEDLVKAGA 146 (242)
T ss_pred CEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCC----CCceEEecCccccHHHHHHHHHHHHHhCC
Confidence 100 00 2346677777777777777762 22222222222345666666666666654
No 232
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.79 E-value=4.6e+02 Score=23.44 Aligned_cols=17 Identities=29% Similarity=0.802 Sum_probs=11.1
Q ss_pred hhHHHHHHHhCCeEEec
Q 019368 189 AEIVPTCRELGIGIVAY 205 (342)
Q Consensus 189 ~~~~~~~~~~gi~v~a~ 205 (342)
...+++|++.|+..+..
T Consensus 88 ~~~i~~A~~lG~~~v~~ 104 (279)
T cd00019 88 KDEIERCEELGIRLLVF 104 (279)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 35667777777776554
No 233
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.71 E-value=9.2e+02 Score=25.83 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCccEEecCCCcHHHHHHHHhcCCcceecc
Q 019368 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAVQL 178 (342)
Q Consensus 101 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 178 (342)
+.+.|++-++...........-+|+|+..+... .+.+.+|.+..++ ..++.|-++|.....+.-+.. -|.++
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS----RCq~f 173 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS----RCLQF 173 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh----heEEE
Confidence 455666656554433322345788888877654 4567777777766 589999999875443322222 45666
Q ss_pred ccccCCcchh-hhHHHHHHHhCCe
Q 019368 179 EWSLWSRDVE-AEIVPTCRELGIG 201 (342)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~~~gi~ 201 (342)
.|..+....- .-+...|.+.||.
T Consensus 174 ~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 174 NLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred ecCCcCHHHHHHHHHHHHHHcCCC
Confidence 6776654211 2233445555554
No 234
>PRK00208 thiG thiazole synthase; Reviewed
Probab=23.68 E-value=5.4e+02 Score=23.16 Aligned_cols=105 Identities=12% Similarity=-0.003 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhcCCcceec
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQ 177 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 177 (342)
..+.+.-.+-.+-..+-++++.|-|=.+..+... .+..+++++.++|.++|.+- +=+++.++...+++.+. .+++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~-G~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA-GCAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEeC
Confidence 4466666677778888889999888888776654 36789999999999999864 33556666666665554 334443
Q ss_pred cccccCCcc---hhhhHHHHHHH-hCCeEEec
Q 019368 178 LEWSLWSRD---VEAEIVPTCRE-LGIGIVAY 205 (342)
Q Consensus 178 ~~~~~~~~~---~~~~~~~~~~~-~gi~v~a~ 205 (342)
.--+++-.. ...++++...+ .++.|++-
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 211222111 01345666666 46776653
No 235
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=23.47 E-value=5.4e+02 Score=23.60 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhcCCCeeeccCCCCHHHHHHHH
Q 019368 248 ERVNEIAMRKGC------TPAQLALAWVHHQGDDVCPIPGTTKIEQLNENI 292 (342)
Q Consensus 248 ~~l~~ia~~~~~------s~~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l 292 (342)
..|.++|++.+. ++.++-..|+-.... ..+..|+|+|+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHHHHHH
Confidence 378889988873 788999999976654 57789999999876543
No 236
>PHA02128 hypothetical protein
Probab=23.44 E-value=2e+02 Score=22.10 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCccEEecCCCcHHHHHHHHhc------------------CCcceec---cccccCCcchhhhHHHH
Q 019368 136 EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV------------------HPITAVQ---LEWSLWSRDVEAEIVPT 194 (342)
Q Consensus 136 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~------------------~~~~~~q---~~~~~~~~~~~~~~~~~ 194 (342)
..++.-..++..+|-+|-|-+...+..+++..... ..+.+.+ -+|.+-.+....+++++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 45667778889999999998877666555544321 1222233 35666666555799999
Q ss_pred HHHhCCeEEec
Q 019368 195 CRELGIGIVAY 205 (342)
Q Consensus 195 ~~~~gi~v~a~ 205 (342)
+-.+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999988764
No 237
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=22.99 E-value=71 Score=27.45 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=42.3
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCcHHHHHHHHhcCCcceecccccc
Q 019368 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWSL 182 (342)
Q Consensus 111 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~~ 182 (342)
..+..+|.||+-+.+ .|.....+ ..+.+.++.+.-..+.+||- |.+.+.+.+++....++++|++-+-
T Consensus 13 ~~~~~~g~d~~Gfi~--~~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 13 RLAAELGADYLGFIF--YPKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHcCCCEEeeec--CCCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 456788999988864 34322211 23344455544444488975 4578889999999999999986554
No 238
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=22.88 E-value=5e+02 Score=23.41 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCcHHHHHHHHhcCCccee
Q 019368 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAV 176 (342)
Q Consensus 98 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~ 176 (342)
..++.+...+ +-+.|.++|++.|.+-. |.. ..+.+++.+.+.+.++ .+-++......+.++.+.+. .++.+
T Consensus 17 ~~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~---~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i 88 (262)
T cd07948 17 AFFDTEDKIE-IAKALDAFGVDYIELTS---PAA---SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGV 88 (262)
T ss_pred CCCCHHHHHH-HHHHHHHcCCCEEEEEC---CCC---CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEE
Confidence 3556665544 55669999988887763 433 2344555555555444 33455566777888888775 33333
Q ss_pred ccccccC--------Ccch------hhhHHHHHHHhCCeEEec
Q 019368 177 QLEWSLW--------SRDV------EAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 177 q~~~~~~--------~~~~------~~~~~~~~~~~gi~v~a~ 205 (342)
-+-++.- .... -.+.+.+++++|+.+...
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3322211 1111 135678888999876554
No 239
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=22.77 E-value=5.8e+02 Score=24.77 Aligned_cols=111 Identities=13% Similarity=-0.016 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCCeEeCCCC---------CCCCcHHHHHHHHhcCCCC---CCEEEEeeeccccCCCCCCCCCHHHHHHHH
Q 019368 42 ALIHHAINSGITLLDTSDI---------YGPYTNEILVGKALKGGMR---ERVELATKFGISFADGGKIRGDPAYVRACC 109 (342)
Q Consensus 42 ~~l~~A~~~Gi~~~DTA~~---------Yg~g~sE~~lG~al~~~~R---~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (342)
+.++...+.|+|.+.-+-. .+.+.+...+-++++.... ..+.+.-=+|.. ..+.+.+.+.+
T Consensus 142 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP-------~qt~e~~~~~l 214 (430)
T PRK08208 142 EKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP-------GQTHASWMESL 214 (430)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC-------CCCHHHHHHHH
Confidence 3455555678888764432 2333333333344433211 122222233432 55788888888
Q ss_pred HHHHHHcCCCcccEEEeecCCCC------CC-HH---HHH-HHHHHHHHcCCccEEecCCCcH
Q 019368 110 EASLKRLDIDCIDLYYQHRVDTK------IP-IE---VTI-GELKKLVEEGKIKYIGLSEACA 161 (342)
Q Consensus 110 ~~SL~~Lg~d~iDl~~lH~p~~~------~~-~~---~~~-~~L~~l~~~G~ir~iGvS~~~~ 161 (342)
+..+ +|+.+++.++.+.-.... .+ .+ +.+ .+.+.|.+.|- +.+++++|..
T Consensus 215 ~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 215 DQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred HHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 7776 589999999876532111 01 11 223 34556667775 6699999874
No 240
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=22.34 E-value=4.5e+02 Score=24.96 Aligned_cols=86 Identities=9% Similarity=0.134 Sum_probs=54.9
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcCCccEEec-------CCCcHHHHHHH---HhcCCcceeccccc
Q 019368 123 LYYQHRVDTK-----------IPIEVTIGELKKLVEEGKIKYIGL-------SEACAATIRRA---HAVHPITAVQLEWS 181 (342)
Q Consensus 123 l~~lH~p~~~-----------~~~~~~~~~L~~l~~~G~ir~iGv-------S~~~~~~l~~~---~~~~~~~~~q~~~~ 181 (342)
.+.||.|+.+ .++++.+++.+...+... +.|-+ -|.+.++.+++ +...+-.++.++||
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~N 293 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYN 293 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecC
Confidence 3679999653 346788888888876655 44422 14445554444 44455588999999
Q ss_pred cCCcch-----h---hhHHHHHHHhCCeEEeccccc
Q 019368 182 LWSRDV-----E---AEIVPTCRELGIGIVAYGPLG 209 (342)
Q Consensus 182 ~~~~~~-----~---~~~~~~~~~~gi~v~a~~pl~ 209 (342)
+..... . ....+...++||.+.....-+
T Consensus 294 p~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g 329 (349)
T COG0820 294 PVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRG 329 (349)
T ss_pred CCCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccc
Confidence 986431 1 345666667888888766544
No 241
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.23 E-value=2.2e+02 Score=22.92 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCC
Q 019368 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (342)
Q Consensus 99 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~ 158 (342)
..+.+.+...+++.++ ..-+.-.+=..|...+...+.+.|..+++.| +..+|+.+
T Consensus 80 ~v~~~~L~~~L~~~~~----~~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 80 PVTDETMITALDALTE----GKKDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred cccHHHHHHHHHHHHh----cCCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 3445555555554433 2234444456688889999999999999999 45577755
No 242
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=21.70 E-value=2.8e+02 Score=24.13 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCC-CcHHHHHHHHhcCCcceeccc
Q 019368 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLE 179 (342)
Q Consensus 101 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~ 179 (342)
+++.. ..+-+.|-.-|+..+-+-+ - ..+.++.+++++++..=-.||.-+ .+.++++.+.+..- +++
T Consensus 18 ~~e~a-~~~~~al~~~Gi~~iEit~---~-----t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi--- 84 (204)
T TIGR01182 18 DVDDA-LPLAKALIEGGLRVLEVTL---R-----TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI--- 84 (204)
T ss_pred CHHHH-HHHHHHHHHcCCCEEEEeC---C-----CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE---
Confidence 44444 3355667777765544433 1 134566666666653324688877 48888888877532 222
Q ss_pred cccCCcchhhhHHHHHHHhCCeEEe
Q 019368 180 WSLWSRDVEAEIVPTCRELGIGIVA 204 (342)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~gi~v~a 204 (342)
.++. .+.+++++|+++||.++.
T Consensus 85 vsP~---~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 VSPG---LTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ECCC---CCHHHHHHHHHcCCcEEC
Confidence 2332 246899999999998776
No 243
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.68 E-value=2.8e+02 Score=28.09 Aligned_cols=59 Identities=22% Similarity=0.138 Sum_probs=42.1
Q ss_pred CcHHHHHHHHhcC-CCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHc-CCCcccEEEeecCCCCCCHH
Q 019368 64 YTNEILVGKALKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL-DIDCIDLYYQHRVDTKIPIE 136 (342)
Q Consensus 64 g~sE~~lG~al~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~L-g~d~iDl~~lH~p~~~~~~~ 136 (342)
|.|-+-++++|.+ .+|+.+.|+-=. +.++.+ +..||+|| |+-|+.=+.+-|-.+..+.+
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLT-----------YERe~V---Lm~sLeRL~gLPYLnKvvVVWNspk~P~d 692 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLT-----------YEREAV---LMGSLERLHGLPYLNKVVVVWNSPKDPPD 692 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEE-----------ehHHHH---HHHHHHHhhCCcccceEEEEeCCCCCChh
Confidence 4577888999976 588888664432 134544 78999999 89999988887766654444
No 244
>PRK10200 putative racemase; Provisional
Probab=21.64 E-value=5.1e+02 Score=22.77 Aligned_cols=63 Identities=19% Similarity=0.088 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCC------------CCHHHHHHHHHHHHHcCCccEEecCCCcHHHH
Q 019368 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTK------------IPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (342)
Q Consensus 101 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~------------~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 164 (342)
+.++.++-++..-.+.+.++++.+.+|.++.. .+.....+.++.|.+.| ++.|-+...++...
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 45666666677777888899999999998432 23445677788888877 68888877665543
No 245
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=21.58 E-value=4.2e+02 Score=21.12 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=44.0
Q ss_pred CCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCC----CcccEEEeecCCCC-CCHHHHHHHHHHHHH
Q 019368 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI----DCIDLYYQHRVDTK-IPIEVTIGELKKLVE 147 (342)
Q Consensus 78 ~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~----d~iDl~~lH~p~~~-~~~~~~~~~L~~l~~ 147 (342)
.|=-+.|+-|+|. ...+..|++.+.++++.+.. ...|++++-.+... .+..++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~--------AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN--------AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc--------chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 3444667777663 44678888888888887643 45799999998754 456677777776655
No 246
>PRK11024 colicin uptake protein TolR; Provisional
Probab=21.46 E-value=2.1e+02 Score=22.97 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecC
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS 157 (342)
.+.+.+...++..++ ..-|...+=..|...+...+.+.|+.+++.|. ..+++.
T Consensus 85 v~~~~L~~~l~~~~~----~~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFK----ANPKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHh----hCCCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEE
Confidence 344555444444433 23355455566888899999999999999984 446664
No 247
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.39 E-value=6.4e+02 Score=23.15 Aligned_cols=94 Identities=11% Similarity=-0.017 Sum_probs=47.0
Q ss_pred CCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC----------HHHHHHHHHHHHHc
Q 019368 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP----------IEVTIGELKKLVEE 148 (342)
Q Consensus 79 R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~----------~~~~~~~L~~l~~~ 148 (342)
.+++.|..|+...... ....+.+.. ..+-+.|+.+|+|+|+ +|......+ ....++.+..+++.
T Consensus 206 g~d~~i~vris~~~~~--~~g~~~~e~-~~la~~l~~~G~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 279 (327)
T cd02803 206 GPDFPVGVRLSADDFV--PGGLTLEEA-IEIAKALEEAGVDALH---VSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA 279 (327)
T ss_pred CCCceEEEEechhccC--CCCCCHHHH-HHHHHHHHHcCCCEEE---eCCCCCcccccccCCCCCCcchhHHHHHHHHHH
Confidence 3467788887653210 012334433 3344556677755544 333222110 12234444555554
Q ss_pred CCccEEecCCC-cHHHHHHHHhcCCcceecc
Q 019368 149 GKIKYIGLSEA-CAATIRRAHAVHPITAVQL 178 (342)
Q Consensus 149 G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 178 (342)
=.+.-++..+. +++.++++++....+.+++
T Consensus 280 ~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 280 VKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 45555665554 4777777776656666654
No 248
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.29 E-value=8.2e+02 Score=25.58 Aligned_cols=99 Identities=11% Similarity=0.043 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC--CCCCCCcHHHHHHHHhcCCCCCCEEEEe--eeccccCCC----------CCCC
Q 019368 34 PEPEPDMIALIHHAINSGITLLDTS--DIYGPYTNEILVGKALKGGMRERVELAT--KFGISFADG----------GKIR 99 (342)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DTA--~~Yg~g~sE~~lG~al~~~~R~~~~I~t--K~~~~~~~~----------~~~~ 99 (342)
..+.++.++++++..+.|+.-|=.+ .+|-+...|..+++.+++.- ..+-|++ ++++....- .-..
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 3588889999999999999877654 47777789999999999854 5666666 776632110 0001
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH
Q 019368 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI 135 (342)
Q Consensus 100 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~ 135 (342)
--....+++++.|+.-|.+ ..++++-+.......
T Consensus 214 -i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~~ 247 (674)
T COG0145 214 -ILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVSA 247 (674)
T ss_pred -HHHHHHHHHHHHHHhcCCC-ceeEEEecCCccccH
Confidence 1244556777788888765 578887776444443
No 249
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=21.18 E-value=4.4e+02 Score=21.19 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=13.8
Q ss_pred hhHHHHHHHhCCeEEeccc
Q 019368 189 AEIVPTCRELGIGIVAYGP 207 (342)
Q Consensus 189 ~~~~~~~~~~gi~v~a~~p 207 (342)
..+++.+++.+..++-.++
T Consensus 91 ~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 91 RQMIETAQARGAPVLLVGM 109 (177)
T ss_pred HHHHHHHHHCCCeEEEEec
Confidence 4678888888887776543
No 250
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=21.11 E-value=3.1e+02 Score=24.92 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=12.4
Q ss_pred HHHHHHHcCCCeEeC
Q 019368 43 LIHHAINSGITLLDT 57 (342)
Q Consensus 43 ~l~~A~~~Gi~~~DT 57 (342)
-|...++.|||+||-
T Consensus 46 sI~~QL~~GvR~LdL 60 (267)
T cd08590 46 SITDQLDLGARFLEL 60 (267)
T ss_pred CHHHHHhhCCcEEEE
Confidence 367788999999993
No 251
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=21.01 E-value=1.8e+02 Score=27.17 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcC
Q 019368 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (342)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg 117 (342)
+--+++|++.-+.|+ .+|.|+. ||+.+=++++- -..-+|+|......--....+.+ +.. ++..-++=|
T Consensus 160 ~~G~~vV~~mn~lGm-~vDvSH~-----s~~t~~Dv~~~--s~~PviaSHSn~ral~~h~RNlt-De~---iraia~~GG 227 (320)
T PF01244_consen 160 PFGREVVREMNRLGM-LVDVSHL-----SEKTFWDVLEI--SKKPVIASHSNARALCPHPRNLT-DEQ---IRAIAERGG 227 (320)
T ss_dssp HHHHHHHHHHHHHT--EEE-TTB------HHHHHHHHHH---SSEEEECCEEBTTTS--TTSB--HHH---HHHHHHTT-
T ss_pred hHHHHHHHHHHHcCC-eeeeccC-----CHHHHHHHHhh--cCCCEEEeccChHhhCCCCCCCC-HHH---HHHHHHCCc
Confidence 346889999999998 9999997 88888888875 23577888876543211122332 222 233333323
Q ss_pred CCcccEEEeecC---C--CCCCHHHHHHHHHHHHHcCCccEEecCC
Q 019368 118 IDCIDLYYQHRV---D--TKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (342)
Q Consensus 118 ~d~iDl~~lH~p---~--~~~~~~~~~~~L~~l~~~G~ir~iGvS~ 158 (342)
.|-+.+.... + ....++++++.++.+++-+=+.+||+..
T Consensus 228 --viGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGs 271 (320)
T PF01244_consen 228 --VIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGS 271 (320)
T ss_dssp --EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE-
T ss_pred --EEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECc
Confidence 3555544432 2 3456899999999999987799999865
No 252
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.88 E-value=7.8e+02 Score=23.90 Aligned_cols=151 Identities=11% Similarity=0.033 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHc
Q 019368 37 EPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (342)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~L 116 (342)
.++..+.++.+++.|++.|=.--.-......+.+ +++++.-.+++.|..=.. ..++.+.. .+-+++|
T Consensus 197 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v-~avRe~vG~~~~L~vDaN--------~~w~~~~A----~~~~~~L 263 (415)
T cd03324 197 DEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC-RLAREVIGPDNKLMIDAN--------QRWDVPEA----IEWVKQL 263 (415)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHHHHhcCCCCeEEEECC--------CCCCHHHH----HHHHHHh
Confidence 3555566677778898876532100100111222 233332222333322221 12344432 2223333
Q ss_pred CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC---Cc-cEEecCCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhH
Q 019368 117 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG---KI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEI 191 (342)
Q Consensus 117 g~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G---~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~ 191 (342)
+-+++.++-.|-+.. -++.+.+|++.. .| -..|=|.++...+.++++....+++|....-.-.- ...++
T Consensus 264 --~~~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~ki 337 (415)
T cd03324 264 --AEFKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENLAV 337 (415)
T ss_pred --hccCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHH
Confidence 224566677665432 355666666653 23 24466678889999999888899999987765421 23588
Q ss_pred HHHHHHhCCeEEecc
Q 019368 192 VPTCRELGIGIVAYG 206 (342)
Q Consensus 192 ~~~~~~~gi~v~a~~ 206 (342)
.+.|+.+|+.+..++
T Consensus 338 a~lA~a~gi~~~pH~ 352 (415)
T cd03324 338 LLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHcCCeEEEcC
Confidence 999999999987763
No 253
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=20.88 E-value=6.9e+02 Score=23.34 Aligned_cols=134 Identities=10% Similarity=0.125 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CCCCCCCC--cHHHHHHHHhcCCC-CCCEEEEeeeccccCCCCCCCCCH
Q 019368 36 PEPDMIALIHHAINSGITLLD----------TSDIYGPY--TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDP 102 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~D----------TA~~Yg~g--~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~ 102 (342)
+.++..+..+.+.+.|+..|| +...||.. ..-+.+.+.++..+ .-.+-|+.|+.....+ ..+.
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~----~~t~ 150 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD----QDSY 150 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC----CcCH
Confidence 456777777888889999998 44566642 22345555555421 1135677876332211 1122
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCH---------HHHHHHHHHHHHcC-CccEEecCC-CcHHHHHHHHhc
Q 019368 103 AYVRACCEASLKRLDIDCIDLYYQHRVDT-KIPI---------EVTIGELKKLVEEG-KIKYIGLSE-ACAATIRRAHAV 170 (342)
Q Consensus 103 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~-~~~~---------~~~~~~L~~l~~~G-~ir~iGvS~-~~~~~l~~~~~~ 170 (342)
+.. ..+-+.++..| +|.+.+|.-.. .... .-.|+.+.++++.- .|--||... .+++.+.++++.
T Consensus 151 ~~~-~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~ 226 (333)
T PRK11815 151 EFL-CDFVDTVAEAG---CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQH 226 (333)
T ss_pred HHH-HHHHHHHHHhC---CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhc
Confidence 222 23445566677 57778885321 0000 01256666666653 566666555 366666666652
Q ss_pred CCcceeccc
Q 019368 171 HPITAVQLE 179 (342)
Q Consensus 171 ~~~~~~q~~ 179 (342)
.+.+++-
T Consensus 227 --aDgVmIG 233 (333)
T PRK11815 227 --VDGVMIG 233 (333)
T ss_pred --CCEEEEc
Confidence 5555543
No 254
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=20.83 E-value=1e+02 Score=28.45 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHcC---CCeEeCCCCCCC-CcHHHHHHHHhc----CCCCCC-EEEEeeecc
Q 019368 36 PEPDMIALIHHAINSG---ITLLDTSDIYGP-YTNEILVGKALK----GGMRER-VELATKFGI 90 (342)
Q Consensus 36 ~~~~~~~~l~~A~~~G---i~~~DTA~~Yg~-g~sE~~lG~al~----~~~R~~-~~I~tK~~~ 90 (342)
-...|.++++.|=+-| |+||||+-.|-. |--|+--++++. ..-+=+ -.|++=+|-
T Consensus 135 GyRKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGE 198 (317)
T COG0825 135 GYRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGE 198 (317)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 3457899999998888 579999999943 223333444443 322222 355665653
No 255
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.74 E-value=5.8e+02 Score=24.13 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=57.6
Q ss_pred CCCEEEEeeeccc-----cC---CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc-C
Q 019368 79 RERVELATKFGIS-----FA---DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE-G 149 (342)
Q Consensus 79 R~~~~I~tK~~~~-----~~---~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~-G 149 (342)
|..+-|+|.+|-. +. .|...+.+...|..++-..-+.++....-++++-.=.+..-.+.+.++++.+++. |
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~ 183 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDA 183 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhh
Confidence 4557788877632 11 2244577889998888776666664444555555444444567888888888775 2
Q ss_pred ---CccEEecCCCcH-HHHHHHHh
Q 019368 150 ---KIKYIGLSEACA-ATIRRAHA 169 (342)
Q Consensus 150 ---~ir~iGvS~~~~-~~l~~~~~ 169 (342)
.-+.|-||+... ..+.++.+
T Consensus 184 ~~~~~r~itvST~G~~~~i~~l~~ 207 (342)
T PRK14465 184 FNLGAKRITISTSGVVNGIRRFIE 207 (342)
T ss_pred hcCCCCeEEEeCCCchHHHHHHHh
Confidence 346788887643 55666554
No 256
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=20.47 E-value=6.9e+02 Score=23.16 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCc------HHHHHHHHhcCCC-CCCEEEEeeeccccCCCCCCCCCHHHHHH
Q 019368 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYT------NEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRA 107 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~------sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~i~~ 107 (342)
.+.++..++++.+.+.|+..|--+ | |+ -+.++..+ ++.. ...+.|+|- |.. +.+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~i-~~~~~l~~i~itTN-G~l-------------l~~ 105 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVARL-GKLPGLEELSLTTN-GSR-------------LAR 105 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHHH-HhCCCCceEEEEeC-hhH-------------HHH
Confidence 577889999999999999877643 2 21 22333322 2211 224555554 211 222
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCC--------CCHHHHHHHHHHHHHcCC
Q 019368 108 CCEASLKRLDIDCIDLYYQHRVDTK--------IPIEVTIGELKKLVEEGK 150 (342)
Q Consensus 108 ~~~~SL~~Lg~d~iDl~~lH~p~~~--------~~~~~~~~~L~~l~~~G~ 150 (342)
.-+.|...|++++- +-|+..++. ..++.++++++.+++.|.
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 34556667777654 345554332 236678888888888764
No 257
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=20.41 E-value=7.3e+02 Score=23.44 Aligned_cols=121 Identities=12% Similarity=0.169 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHcC---CCeEeCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHH
Q 019368 35 EPEPDMIALIHHAINSG---ITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (342)
Q Consensus 35 ~~~~~~~~~l~~A~~~G---i~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (342)
.+.++..+++....+.- +-.+|..+..+.-. ..+-+.+. ...-++|.+|+-... .....+.+.+-+.+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~--~~l~~~~~--~~piilV~NK~DLl~-----k~~~~~~~~~~l~~ 118 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI--PELKRFVG--GNPVLLVGNKIDLLP-----KSVNLSKIKEWMKK 118 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCcc--HHHHHHhC--CCCEEEEEEchhhCC-----CCCCHHHHHHHHHH
Confidence 35566677666554322 34678665554321 22223332 455678999986432 12345566666666
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEecCCCcHHHHH
Q 019368 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIR 165 (342)
Q Consensus 112 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~ 165 (342)
.++.+|....+++.+- ......++++++.|.++.+.+.+-.+|.+|..-..|-
T Consensus 119 ~~k~~g~~~~~i~~vS-Ak~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStli 171 (360)
T TIGR03597 119 RAKELGLKPVDIILVS-AKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLI 171 (360)
T ss_pred HHHHcCCCcCcEEEec-CCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 6777776544666554 3444568899999988876667888999998776543
No 258
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=20.29 E-value=4.3e+02 Score=26.37 Aligned_cols=126 Identities=18% Similarity=0.178 Sum_probs=67.0
Q ss_pred HHHHHHhcCCCCCCEEEEeeeccccCCCCCCCCCHHHHHHHHHHHHHHcCCC--cccEEEeecCCCCCCHHHHHHHHHHH
Q 019368 68 ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID--CIDLYYQHRVDTKIPIEVTIGELKKL 145 (342)
Q Consensus 68 ~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d--~iDl~~lH~p~~~~~~~~~~~~L~~l 145 (342)
+-+|.+|+. +.+++|+..+... ++.-..+..-+++.+++-++. .|-+=+-.+ ...+.+.....+.++
T Consensus 342 ~dlG~~L~~--~~~l~VsINl~a~-------Dl~s~rli~~~~~~l~~~~v~pqQI~lElTER--~f~D~~~~~~iI~r~ 410 (524)
T COG4943 342 RDLGDLLRQ--HRDLHVSINLSAS-------DLASPRLIDRLNRKLAQYQVRPQQIALELTER--TFADPKKMTPIILRL 410 (524)
T ss_pred HHhHHHHHh--CcceEEEEeeeeh-------hhcCchHHHHHHHHHHhcCcChHHheeehhhh--hhcCchhhhHHHHHH
Confidence 445666654 5667787777643 444455666677777766642 222211111 112345677888999
Q ss_pred HHcCCccEE---ecCCCcHHHHHHH----HhcCCcceec-cccccCCcchhhhHHHHHHHhCCeEEec
Q 019368 146 VEEGKIKYI---GLSEACAATIRRA----HAVHPITAVQ-LEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (342)
Q Consensus 146 ~~~G~ir~i---GvS~~~~~~l~~~----~~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 205 (342)
++.|.=-+| |..--+...|.++ ++..+ ++++ +.++....-....+++.++.+|+.+++=
T Consensus 411 ReaG~~IyIDDFGTGYSnL~YLq~L~VDaLKIDK-sFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 411 REAGHEIYIDDFGTGYSNLHYLQSLPVDALKIDK-SFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred HhcCCeEEEccCcCcchhHHHHhhCCccceeccH-HHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 999984333 3322223333332 11111 1121 2233333333467999999999998873
No 259
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.16 E-value=1.3e+02 Score=19.02 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 019368 249 RVNEIAMRKGCTPAQLALAWVHH 271 (342)
Q Consensus 249 ~l~~ia~~~~~s~~q~al~~~l~ 271 (342)
.+.++|.++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 5677899999988775 778744
No 260
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=20.04 E-value=8e+02 Score=23.72 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=55.0
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcC--CccEEec--CCCcHHHHHHHHhcCCcceeccccccCCcc-hhhhHHHHH
Q 019368 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGL--SEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTC 195 (342)
Q Consensus 121 iDl~~lH~p~~~~~~~~~~~~L~~l~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~ 195 (342)
.+++++-.|-...+ |+.+.+|.+.- .+.-+|= ..+++..+.++++....+++|+..+-+-.- ...++...|
T Consensus 277 ~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA 352 (408)
T cd03313 277 YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLA 352 (408)
T ss_pred CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHH
Confidence 46888888865443 55555566552 4443332 235789999999988889999888865432 124788999
Q ss_pred HHhCCeEEe
Q 019368 196 RELGIGIVA 204 (342)
Q Consensus 196 ~~~gi~v~a 204 (342)
+++|+.++.
T Consensus 353 ~~~G~~~~~ 361 (408)
T cd03313 353 KKNGYGVVV 361 (408)
T ss_pred HHcCCeEEc
Confidence 999999864
No 261
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=20.03 E-value=3.9e+02 Score=24.65 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=52.4
Q ss_pred hhhHHHHHHHhCCeEEecccccccccCCCCCCCCCCCcchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCC------CH
Q 019368 188 EAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGC------TP 261 (342)
Q Consensus 188 ~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~ 261 (342)
+..+.+.+.+.++-++..++-... -.+|.++|++.|. ++
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~nSSN-----------------------------------s~rL~eiA~~~g~~aylId~~ 247 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSKNSSN-----------------------------------SNRLAEIAKRHGKPAYLIDDA 247 (294)
T ss_pred HHHHHHHhhcCCEEEEECCCCCcc-----------------------------------HHHHHHHHHHhCCCeEEeCCh
Confidence 567888888888887776554321 1489999999986 78
Q ss_pred HHHHHHHHHhcCCCeeeccCCCCHHHHHHHH
Q 019368 262 AQLALAWVHHQGDDVCPIPGTTKIEQLNENI 292 (342)
Q Consensus 262 ~q~al~~~l~~~~v~~vi~g~~~~~~l~~~l 292 (342)
.++=..|+-... ...+-.|+|+|+-+-+++
T Consensus 248 ~ei~~~w~~~~~-~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 248 EEIDPEWLKGVK-TVGVTAGASTPDWLVQEV 277 (294)
T ss_pred HhCCHHHhcCcc-EEEEecCCCCCHHHHHHH
Confidence 888889988754 356778999999887765
Done!