Query 019373
Match_columns 342
No_of_seqs 146 out of 957
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 15:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_P 50S ribosomal protein L 100.0 1.4E-41 4.8E-46 284.1 9.1 104 231-339 2-106 (114)
2 2zjr_M 50S ribosomal protein L 100.0 2.3E-41 7.9E-46 297.6 6.9 109 231-340 6-115 (166)
3 2ftc_K 39S ribosomal protein L 100.0 2.9E-40 1E-44 269.9 11.5 91 250-340 1-91 (98)
4 3v2d_T 50S ribosomal protein L 100.0 2.9E-40 1E-44 285.8 10.5 105 230-339 4-109 (146)
5 3bbo_R Ribosomal protein L19; 100.0 3.4E-42 1.2E-46 315.1 -8.4 112 229-340 119-230 (233)
6 2vc8_A Enhancer of mRNA-decapp 67.4 25 0.00084 28.3 7.7 59 254-322 7-70 (84)
7 4a53_A EDC3; RNA binding prote 53.6 14 0.00048 31.6 4.3 52 255-321 11-64 (125)
8 2rm4_A CG6311-PB, DM EDC3; enh 47.1 88 0.003 26.0 7.9 58 254-322 10-73 (103)
9 3cnr_A Type IV fimbriae assemb 46.8 37 0.0013 27.7 5.7 48 251-304 40-87 (117)
10 3d6x_A (3R)-hydroxymyristoyl-[ 42.5 23 0.00079 27.9 3.8 29 252-280 100-128 (146)
11 1nz9_A Transcription antitermi 41.3 56 0.0019 22.9 5.3 28 252-285 4-31 (58)
12 1zq1_A Glutamyl-tRNA(Gln) amid 39.4 34 0.0012 33.8 5.2 65 252-326 11-77 (438)
13 2gll_A FABZ, (3R)-hydroxymyris 38.0 29 0.00099 29.0 3.9 29 252-280 124-152 (171)
14 2e6z_A Transcription elongatio 37.1 29 0.00098 25.1 3.2 29 250-284 5-33 (59)
15 4h4g_A (3R)-hydroxymyristoyl-[ 37.0 27 0.00093 29.3 3.5 28 252-279 110-137 (160)
16 4he6_A Peptidase family U32; u 35.4 22 0.00074 26.9 2.5 38 270-307 3-41 (89)
17 2eif_A IF-5A, protein (eukaryo 34.8 89 0.003 25.9 6.3 49 250-309 13-67 (136)
18 4fm4_B NitrIle hydratase beta 34.6 23 0.00078 31.9 2.8 34 251-284 117-154 (206)
19 3p8d_A Medulloblastoma antigen 34.0 80 0.0027 24.0 5.4 46 250-307 4-49 (67)
20 1u1z_A (3R)-hydroxymyristoyl-[ 32.9 69 0.0024 26.4 5.4 27 253-279 121-147 (168)
21 3m4w_A Sigma-E factor regulato 31.4 96 0.0033 28.7 6.6 48 271-322 16-64 (295)
22 3p8b_B Transcription antitermi 29.7 88 0.003 25.6 5.4 48 250-305 89-138 (152)
23 4b3f_X DNA-binding protein smu 29.4 95 0.0032 30.6 6.5 38 249-293 75-114 (646)
24 1jb7_A Telomere-binding protei 29.3 25 0.00087 35.0 2.4 40 248-293 108-148 (495)
25 2zzd_A Thiocyanate hydrolase s 28.6 34 0.0012 29.1 2.8 36 249-284 33-72 (126)
26 2kbn_A Conserved protein; nucl 28.3 44 0.0015 26.3 3.3 25 249-273 57-82 (109)
27 4i83_A 3-hydroxyacyl-[acyl-car 27.9 48 0.0017 26.9 3.5 28 253-280 107-134 (152)
28 2jvv_A Transcription antitermi 27.3 1.1E+02 0.0039 25.5 5.8 29 251-285 126-154 (181)
29 1z6b_A Pffabz, fatty acid synt 26.4 55 0.0019 26.2 3.6 28 252-279 106-135 (154)
30 1bkb_A Translation initiation 25.8 2.2E+02 0.0076 23.4 7.2 57 250-317 11-77 (136)
31 1ugp_B NitrIle hydratase beta 25.1 41 0.0014 30.7 2.8 36 249-284 135-174 (226)
32 3qyh_B CO-type nitrIle hydrata 24.6 43 0.0015 30.4 2.9 36 249-284 127-166 (219)
33 1vq8_K 50S ribosomal protein L 23.2 97 0.0033 26.4 4.6 37 248-284 42-78 (132)
34 3hht_B NitrIle hydratase beta 23.1 47 0.0016 30.4 2.8 36 249-284 138-177 (229)
35 2f41_A Transcription factor FA 22.9 97 0.0033 23.7 4.2 27 252-278 72-100 (121)
36 3j21_J 50S ribosomal protein L 22.4 1.3E+02 0.0045 25.9 5.3 37 248-284 51-87 (141)
37 1qzg_A Protection of telomeres 21.8 63 0.0022 28.8 3.3 34 247-286 94-128 (187)
38 3e0e_A Replication protein A; 20.7 93 0.0032 23.8 3.7 22 252-273 63-84 (97)
No 1
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=100.00 E-value=1.4e-41 Score=284.05 Aligned_cols=104 Identities=38% Similarity=0.709 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeec
Q 019373 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY 309 (342)
Q Consensus 231 ~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLy 309 (342)
++|+.+|++ +.++|+|+|+|||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||
T Consensus 2 ~~i~~~e~~-----~~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~ 76 (114)
T 3r8s_P 2 NIIKQLEQE-----QMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTH 76 (114)
T ss_dssp CHHHHHHGG-----GCCSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred hHHHHHHHH-----HhccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecC
Confidence 356666554 44689999999999999999999 899999999999999999999999999999999999999999
Q ss_pred CCccceEEEeeeCcccccceeeeccCCCcc
Q 019373 310 SPNILEIKVLDKKKVRRAKLYYLRDKLNPL 339 (342)
Q Consensus 310 SP~IksIEVLRrgKVRRAKLYYLRdr~~~l 339 (342)
||.|++|||++++||||||||||||+.++-
T Consensus 77 SP~I~~IeV~r~gkvRRAKLyYLR~~~GKa 106 (114)
T 3r8s_P 77 SPVVDSISVKRRGAVRKAKLYYLRERTGKA 106 (114)
T ss_dssp CTTEEEEEEEECEECCSSCCGGGTTCCHHH
T ss_pred CCccceEEEEEccccchhheeeecCCcchH
Confidence 999999999999999999999999998754
No 2
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=100.00 E-value=2.3e-41 Score=297.64 Aligned_cols=109 Identities=34% Similarity=0.610 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeec
Q 019373 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY 309 (342)
Q Consensus 231 ~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLy 309 (342)
++|+.|+++++.+. .++++|+|+|||||+|++++.| +|+|+|.|+||||+++|+|+++||||||+++|+|||++||||
T Consensus 6 ~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fplh 84 (166)
T 2zjr_M 6 KINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFA 84 (166)
T ss_dssp CCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred HHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecC
Confidence 68889998887644 4689999999999999999999 899999999999999999999999999999999999999999
Q ss_pred CCccceEEEeeeCcccccceeeeccCCCccc
Q 019373 310 SPNILEIKVLDKKKVRRAKLYYLRDKLNPLR 340 (342)
Q Consensus 310 SP~IksIEVLRrgKVRRAKLYYLRdr~~~l~ 340 (342)
||.|++|||+++|||||||||||||+.++..
T Consensus 85 SP~I~kIEVvrrGKVRRAKLYYLRd~~GKaA 115 (166)
T 2zjr_M 85 SPLVNQVTIVERGKVRRAKLYYLRELRGKAA 115 (166)
T ss_dssp CTTEEEEEEEECCCCSSSCCGGGCC------
T ss_pred CCccceEEEEeccccchhheeeccCCCCchh
Confidence 9999999999999999999999999988654
No 3
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=2.9e-40 Score=269.90 Aligned_cols=91 Identities=36% Similarity=0.612 Sum_probs=89.4
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeecCCccceEEEeeeCcccccce
Q 019373 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKL 329 (342)
Q Consensus 250 iPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLySP~IksIEVLRrgKVRRAKL 329 (342)
+|+|+|||||+|++++.++|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||.|++|||++++|||||||
T Consensus 1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaKL 80 (98)
T 2ftc_K 1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSL 80 (98)
T ss_pred CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCcccceeE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCccc
Q 019373 330 YYLRDKLNPLR 340 (342)
Q Consensus 330 YYLRdr~~~l~ 340 (342)
|||||++++++
T Consensus 81 yYLR~~~~~~s 91 (98)
T 2ftc_K 81 LYLRDALPEYS 91 (98)
T ss_pred EEeccCCcccc
Confidence 99999999876
No 4
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=100.00 E-value=2.9e-40 Score=285.85 Aligned_cols=105 Identities=34% Similarity=0.699 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEee
Q 019373 230 RHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308 (342)
Q Consensus 230 ~~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpL 308 (342)
.+||+.++.+ +.++|+|+|+|||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++|||
T Consensus 4 ~~li~~ie~~-----~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl 78 (146)
T 3v2d_T 4 GALIKLVESR-----YVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL 78 (146)
T ss_dssp HHHHHHHHHT-----TCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred HHHHHHHHHH-----HhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence 4566665544 45689999999999999999999 89999999999999999999999999999999999999999
Q ss_pred cCCccceEEEeeeCcccccceeeeccCCCcc
Q 019373 309 YSPNILEIKVLDKKKVRRAKLYYLRDKLNPL 339 (342)
Q Consensus 309 ySP~IksIEVLRrgKVRRAKLYYLRdr~~~l 339 (342)
|||.|++|||++++||||||||||||+.++-
T Consensus 79 ~SP~I~~IeVvrrgkVRRAKLYYLR~~~GKa 109 (146)
T 3v2d_T 79 HSPLIQKIDIVQRGRARRAKLYFIRNLSDRE 109 (146)
T ss_dssp TCTTEEEEEEEECEECSSSCCGGGGGCCHHH
T ss_pred CCCccceEEEEecCccchhheeeccCCcchh
Confidence 9999999999999999999999999998753
No 5
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.4e-42 Score=315.12 Aligned_cols=112 Identities=60% Similarity=0.965 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEee
Q 019373 229 ARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308 (342)
Q Consensus 229 a~~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpL 308 (342)
+.++|+.|+++++++.+.++++|+|++||||+|++++.|+|+|+|.|+||||+++|+|+++||||||+++|+|||++|||
T Consensus 119 ~~~iM~~L~re~ie~~q~kkdiPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpL 198 (233)
T 3bbo_R 119 LGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPL 198 (233)
T ss_dssp --CCSSSCSTTHHHHTTCCSCCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhccCCCccCCCCEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEec
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEeeeCcccccceeeeccCCCccc
Q 019373 309 YSPNILEIKVLDKKKVRRAKLYYLRDKLNPLR 340 (342)
Q Consensus 309 ySP~IksIEVLRrgKVRRAKLYYLRdr~~~l~ 340 (342)
|||.|++|||+|+|||||||||||||++++++
T Consensus 199 hSP~I~kIEVvRrgKVRRAKLYYLRd~lp~~S 230 (233)
T 3bbo_R 199 YSPNIKEIKVVSHRKVRKARLYYLRDKLPRLS 230 (233)
T ss_dssp BSSSSSCCCCCCCSCCCCSCSSCCCCSSTTCS
T ss_pred CCCccceEEEEeccccchhhhhhhhcCCcccc
Confidence 99999999999999999999999999999986
No 6
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=67.44 E-value=25 Score=28.30 Aligned_cols=59 Identities=31% Similarity=0.384 Sum_probs=41.6
Q ss_pred CCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeecCceE-----EEEEeecCCccceEEEeeeC
Q 019373 254 KPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGV-----ESLFPLYSPNILEIKVLDKK 322 (342)
Q Consensus 254 rpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGV-----Er~FpLySP~IksIEVLRrg 322 (342)
..|.+|.++- ++-+-+|+|++..+.. .+.|+||+|++ ..|+ |.+| -.--|++++|++-.
T Consensus 7 ~iGs~VSi~c-----~d~lGvYQG~i~~vd~--~~~tItL~~~f-~NG~~~~s~eVtl--s~~DI~~L~ii~~~ 70 (84)
T 2vc8_A 7 WLGSIVSINC-----GDSLGVYQGRVSAVDQ--VSQTISLTRPF-HNGVKCLVPEVTF--RAGDITELKILEIP 70 (84)
T ss_dssp TTTCEEEEEC-----CTTTCEEEEEEEEEET--TTTEEEEEEEE-ETTEECSSSEEEE--EGGGCSEEEEEECC
T ss_pred ccCCEEEEEE-----CCCceEEEEEEEEecc--CCCeEEEehhh-hCCCCCCCcEEEE--EecChhheEEEecC
Confidence 4688888863 4456699999999874 45789999997 4454 3222 23357888888763
No 7
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=53.60 E-value=14 Score=31.59 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=41.1
Q ss_pred CCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEE--EEeecCceEEEEEeecCCccceEEEeee
Q 019373 255 PGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRL--RRLVAGVGVESLFPLYSPNILEIKVLDK 321 (342)
Q Consensus 255 pGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTL--RnIi~GVGVEr~FpLySP~IksIEVLRr 321 (342)
.|..|.|+++.. ..++|+|..+-+.+ +|| |++..... .|-++.|+.++|+-.
T Consensus 11 lGy~V~v~LkDg------s~~qG~I~~vd~k~----LtL~~~~a~~s~~-----~I~asdI~DLkVl~~ 64 (125)
T 4a53_A 11 YGSNVEVLLNND------SKARGVITNFDSSN----SILQLRLANDSTK-----SIVTKDIKDLRILPK 64 (125)
T ss_dssp TTCEEEEEETTS------CEEEEEEEEEETTT----TEEEEEETTTEEE-----EEEGGGEEEEEECCS
T ss_pred cCceEEEEECCC------CEeeEEEEeecCCe----eEEeccccccccc-----eeecccccceeeeec
Confidence 488999988633 28999999997544 566 99865544 899999999999975
No 8
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=47.09 E-value=88 Score=25.97 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=42.7
Q ss_pred CCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeec-Cc-----eEEEEEeecCCccceEEEeeeC
Q 019373 254 KPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GV-----GVESLFPLYSPNILEIKVLDKK 322 (342)
Q Consensus 254 rpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~-GV-----GVEr~FpLySP~IksIEVLRrg 322 (342)
..|..|.|+-. +-+-.|+|.|+++. ..+++|++.+. |+ -+|.+|.-- -|++++++...
T Consensus 10 wiG~~VSI~C~-----d~LGVyQG~I~~V~----~~~ItL~kaFrNGiplk~~~~EVtLsa~--DI~~L~IIe~~ 73 (103)
T 2rm4_A 10 WIGCAVSIACD-----EVLGVFQGLIKQIS----AEEITIVRAFRNGVPLRKQNAEVVLKCT--DIRSIDLIEPA 73 (103)
T ss_dssp GTTCEEEEEEC-----TTTCEEEEEEEEEE----TTEEEEEEEEETTEECSCSSSCEEEETT--TEEEEEEEECC
T ss_pred eeceEEEEeeC-----CcceEeeEEEEEcc----cceeEEhhhhhcCcCcCCCCceEEEEec--chhheeeeccc
Confidence 46888888753 34579999999998 36699999774 54 357777644 48888888753
No 9
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=46.76 E-value=37 Score=27.73 Aligned_cols=48 Identities=29% Similarity=0.392 Sum_probs=33.2
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeecCceEEE
Q 019373 251 PDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVES 304 (342)
Q Consensus 251 PeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr 304 (342)
-.+.+||.|.+.+.+++..+++ ..+|.|+-++-.|-.. +.-.|+||+-
T Consensus 40 ~~~~~G~~V~l~l~Lp~~~~~i-~~~GkVvWi~p~~~~~-----~~p~G~GVqF 87 (117)
T 3cnr_A 40 KRYMLGDEVFLLLTLPDSSERL-PVAGKVIWTTPAGAQG-----NRAAGIGVQF 87 (117)
T ss_dssp SCCCTTCEEEEEEECTTCSCEE-EEEEEEEEEECC-----------CCEEEEEC
T ss_pred CccCCCCEEEEEEEcCCCCceE-EEEEEEEEecCCCCCC-----CCCCceEEEE
Confidence 4689999999999998754444 6779999998665431 2357888864
No 10
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=42.50 E-value=23 Score=27.93 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=21.1
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEE
Q 019373 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVI 280 (342)
Q Consensus 252 eFrpGDIV~V~~~I~EnKeRvQ~FeGVVI 280 (342)
.+.|||+|.+++++.+.+.++-.|++.+.
T Consensus 100 pV~pGd~l~~~~~v~~~~~~~~~~~~~~~ 128 (146)
T 3d6x_A 100 PVRPGDRLDYEMSVVKNRGNMWIFKGQAF 128 (146)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 36889999999988775555556666554
No 11
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=41.28 E-value=56 Score=22.90 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=21.5
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEEecC
Q 019373 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNA 285 (342)
Q Consensus 252 eFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnr 285 (342)
.|++||.|+|. ..-..-|+|.|..+...
T Consensus 4 ~~~~Gd~V~V~------~Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 4 AFREGDQVRVV------SGPFADFTGTVTEINPE 31 (58)
T ss_dssp SCCTTCEEEEC------SGGGTTCEEEEEEEETT
T ss_pred ccCCCCEEEEe------ecCCCCcEEEEEEEcCC
Confidence 58899998884 33456799999998753
No 12
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=39.38 E-value=34 Score=33.77 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=39.8
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeecC--ceEEEEEeecCCccceEEEeeeCcccc
Q 019373 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG--VGVESLFPLYSPNILEIKVLDKKKVRR 326 (342)
Q Consensus 252 eFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~G--VGVEr~FpLySP~IksIEVLRrgKVRR 326 (342)
.+.+||.|+|..... ++ ...|+|++|-....+ +.-+.|=|.-+| +||++ -.|++|+++.++....
T Consensus 11 ~~~~gd~v~~~~~~~--~~-~~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~------~~~~~~~~~~~~~~~~ 77 (438)
T 1zq1_A 11 NINVGDFVRITKEED--GE-EVTYEGYIMPPYELS-AGDTLVLKLENGYNIGIAL------EKIRRIEVLERAKVKP 77 (438)
T ss_dssp TCCTTCEEEEEEESS--SS-EEECCEEECCCCTTC-CCSEEEEEETTSCEEEEEG------GGEEEEEEEECCCCCC
T ss_pred CCCCCCEEEEEECCC--cc-eeEEEEEEecCcccC-CCCeEEEEccCCceeeech------hhcceEEEeccCCCCc
Confidence 477899999876431 22 248999999644433 333444455554 66643 2466788888764433
No 13
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=37.95 E-value=29 Score=29.03 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=21.9
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEE
Q 019373 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVI 280 (342)
Q Consensus 252 eFrpGDIV~V~~~I~EnKeRvQ~FeGVVI 280 (342)
.+.|||+|.+++++.+.+.++-.|+|.+.
T Consensus 124 pV~PGD~L~i~v~v~~~~~~~~~~~~~~~ 152 (171)
T 2gll_A 124 PVTPGDRLEYHLEVLKHKGMIWQVGGTAQ 152 (171)
T ss_dssp CCCTTCEEEEEEEEEEESSSEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 46799999999988775556666776654
No 14
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.13 E-value=29 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEEec
Q 019373 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRN 284 (342)
Q Consensus 250 iPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRn 284 (342)
-..|.+||.|+|. ..=..-|+|+|..+.+
T Consensus 5 ~~~f~~GD~V~V~------~Gpf~g~~G~V~evd~ 33 (59)
T 2e6z_A 5 SSGFQPGDNVEVC------EGELINLQGKILSVDG 33 (59)
T ss_dssp CSSCCTTSEEEEC------SSTTTTCEEEECCCBT
T ss_pred cccCCCCCEEEEe------ecCCCCCEEEEEEEeC
Confidence 3569999999984 2234579999999885
No 15
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=36.98 E-value=27 Score=29.25 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=21.6
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEE
Q 019373 252 DIKPGYIVQLKVVIPENKRRVSTLKGIV 279 (342)
Q Consensus 252 eFrpGDIV~V~~~I~EnKeRvQ~FeGVV 279 (342)
.+.|||+|.+++++...+..+-.|+|.+
T Consensus 110 ~V~PGd~L~i~v~~~~~~~~~~~~~~~~ 137 (160)
T 4h4g_A 110 VVEPGDQLILNVTFERYIRGIWKFKAVA 137 (160)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEE
Confidence 4789999999998877666667777754
No 16
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=35.36 E-value=22 Score=26.92 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=28.7
Q ss_pred cccceEEEEEEEEecCCCceeEEEEEeec-CceEEEEEe
Q 019373 270 RRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFP 307 (342)
Q Consensus 270 eRvQ~FeGVVIarRnrGl~STFTLRnIi~-GVGVEr~Fp 307 (342)
.|.+.|.|.|.......-..++.+||-+. |-+||.+=|
T Consensus 3 ~~~~~fvG~V~~~~~~~g~~~ie~rN~f~~GD~iEi~~P 41 (89)
T 4he6_A 3 KTTREFAGLVLGYDPETGIATVQQRNHFRPGDEVEFFGP 41 (89)
T ss_dssp CSGGGCSEEEEEEETTTTEEEEEESSCBCTTCEEEEEST
T ss_pred ccccEEEEEEEEEeCCCCEEEEEEcCCcCCCCEEEEEcC
Confidence 36789999999976552257799999776 889987643
No 17
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=34.79 E-value=89 Score=25.93 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=32.6
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEEe----cC-C-CceeEEEEEeecCceEEEEEeec
Q 019373 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARR----NA-G-ISTTFRLRRLVAGVGVESLFPLY 309 (342)
Q Consensus 250 iPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarR----nr-G-l~STFTLRnIi~GVGVEr~FpLy 309 (342)
.++|+.|++|.+. + +.++ |+... ++ | ---.+.+||+..|.-+|.+|+--
T Consensus 13 ~~~lr~G~~I~~~-----g----~p~~--V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~ 67 (136)
T 2eif_A 13 VGSLKVGQYVMID-----G----VPCE--IVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 67 (136)
T ss_dssp GGGCCTTSEEEET-----T----EEEE--EEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETT
T ss_pred HHHCcCCCEEEEC-----C----EEEE--EEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCC
Confidence 5789999998762 1 1332 33332 22 2 22457899999999999999853
No 18
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=34.60 E-value=23 Score=31.88 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=25.9
Q ss_pred CCCCCCCEEEEEEEeecCCcccceE----EEEEEEEec
Q 019373 251 PDIKPGYIVQLKVVIPENKRRVSTL----KGIVIARRN 284 (342)
Q Consensus 251 PeFrpGDIV~V~~~I~EnKeRvQ~F----eGVVIarRn 284 (342)
|.|++||.|+|.-..+..-.|+..| +|+|++.++
T Consensus 117 ~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g 154 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISP 154 (206)
T ss_dssp TCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECC
T ss_pred CCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEec
Confidence 6799999999986554456676544 799998875
No 19
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=34.01 E-value=80 Score=23.98 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=33.7
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEe
Q 019373 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFP 307 (342)
Q Consensus 250 iPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~Fp 307 (342)
.|.|++||.|.-.+ .. -+.|.+.|.++.+.+ +++|+ +.+ |++.+..
T Consensus 4 ~~~~~vGd~vmArW--~D----~~yYpA~I~si~~~~---~Y~V~--F~d-G~~etvk 49 (67)
T 3p8d_A 4 SSEFQINEQVLACW--SD----CRFYPAKVTAVNKDG---TYTVK--FYD-GVVQTVK 49 (67)
T ss_dssp -CCCCTTCEEEEEC--TT----SCEEEEEEEEECTTS---EEEEE--ETT-SCEEEEE
T ss_pred CcccccCCEEEEEc--CC----CCEeeEEEEEECCCC---eEEEE--EeC-CceEEEe
Confidence 57999999999986 21 258999999999863 48883 455 7666554
No 20
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=32.91 E-value=69 Score=26.40 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=19.1
Q ss_pred CCCCCEEEEEEEeecCCcccceEEEEE
Q 019373 253 IKPGYIVQLKVVIPENKRRVSTLKGIV 279 (342)
Q Consensus 253 FrpGDIV~V~~~I~EnKeRvQ~FeGVV 279 (342)
+.|||+|++++++.+.+..+-.|++.+
T Consensus 121 V~pGD~L~~~v~v~~~~~g~~~~~~~~ 147 (168)
T 1u1z_A 121 VLPGDQLQLHAKFISVKRSIWKFDCHA 147 (168)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEeCCEEEEEEEE
Confidence 669999999998877444445555544
No 21
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=31.37 E-value=96 Score=28.68 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=37.5
Q ss_pred ccceEEEEEEEEecCCCceeEEEEEee-cCceEEEEEeecCCccceEEEeeeC
Q 019373 271 RVSTLKGIVIARRNAGISTTFRLRRLV-AGVGVESLFPLYSPNILEIKVLDKK 322 (342)
Q Consensus 271 RvQ~FeGVVIarRnrGl~STFTLRnIi-~GVGVEr~FpLySP~IksIEVLRrg 322 (342)
+.+.|+|..|-.++.++. ++.+|... +|.-.|+.-.|..|.- ||+|++
T Consensus 16 ~~lnY~g~fV~~~~~~i~-s~ri~H~~~~~~~~e~L~~LdG~~r---eviR~~ 64 (295)
T 3m4w_A 16 QSLNYELSFISINKQGVE-SLRYRHARLDNRPLAQLLQMDGPRR---EVVQRG 64 (295)
T ss_dssp HHSEEEEEEEEEETTEEE-EEEEEEEECSSSEEEEEEECSSSCC---EEEEET
T ss_pred hhCCeEEEEEEEeCCeEE-EEEEEEEeeCCEEEEEEEEcCCCcE---EEEEEC
Confidence 457999999999987764 56666544 5667999999999984 788875
No 22
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=29.71 E-value=88 Score=25.62 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=31.8
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeecC--ceEEEE
Q 019373 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG--VGVESL 305 (342)
Q Consensus 250 iPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~G--VGVEr~ 305 (342)
...|.+||.|+|. ..-..-|+|+|..+....- ..+|.=.+.| +.||.-
T Consensus 89 ~~~~~~Gd~VrI~------~Gpf~g~~g~V~~vd~~k~--~v~V~v~~~gr~tpvel~ 138 (152)
T 3p8b_B 89 VSGLEPGDLVEVI------AGPFKGQKAKVVKIDESKD--EVVVQFIDAIVPIPVTIK 138 (152)
T ss_dssp TTTCCTTCEEEEC------SSTTTTCEEEEEEEETTTT--EEEEEESSCSSCCEEEEE
T ss_pred cccCCCCCEEEEe------eecCCCCEEEEEEEeCCCC--EEEEEEEecceeEEEEEC
Confidence 3579999999984 2346789999999987543 3444444444 345543
No 23
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=29.36 E-value=95 Score=30.63 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=26.5
Q ss_pred CCC--CCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEE
Q 019373 249 EIP--DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRL 293 (342)
Q Consensus 249 diP--eFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTL 293 (342)
.+| .|++||+|.|.- ++....+.++|+|..+... +++|
T Consensus 75 ~l~~~~~~~Gd~v~~~~---~~~~~~~~~~g~v~~~~~~----~i~v 114 (646)
T 4b3f_X 75 ALPSNSFTSGDIVGLYD---AANEGSQLATGILTRVTQK----SVTV 114 (646)
T ss_dssp CCCCCCCCTTCEEEEEE---TTTTSCCCEEEEEEEEETT----EEEE
T ss_pred CCccCCCCCCCEEEEEe---cCCCCCceEEEEEEEEeCC----EEEE
Confidence 455 699999998852 2333446899999999753 4555
No 24
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=29.32 E-value=25 Score=35.05 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=30.3
Q ss_pred CCCCCC-CCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEE
Q 019373 248 REIPDI-KPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRL 293 (342)
Q Consensus 248 kdiPeF-rpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTL 293 (342)
.++|.+ .+||||.++=. ++|.|.|-+.++-+.+.+++|-|
T Consensus 108 e~LP~V~~~GDII~Lhrv------kIq~~ng~~~~v~~~~~~Sswav 148 (495)
T 1jb7_A 108 EDLPIIHRAGDIIRVHRA------TLRLYNGQRQFNANVFYSSSWAL 148 (495)
T ss_dssp GGSCCCCEETCEEEEEEE------EEEEETTEEEEEEETTTTCEEEE
T ss_pred HHCCCCCCCCCEEEEEEE------EEEEECCcEEEEecCCCceEEEE
Confidence 478999 79999999732 34677777777777777688766
No 25
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=28.59 E-value=34 Score=29.08 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=26.0
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceE----EEEEEEEec
Q 019373 249 EIPDIKPGYIVQLKVVIPENKRRVSTL----KGIVIARRN 284 (342)
Q Consensus 249 diPeFrpGDIV~V~~~I~EnKeRvQ~F----eGVVIarRn 284 (342)
..|.|.+||.|+|.-..+..-.|+..| +|+|.+..+
T Consensus 33 ~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 33 GKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVY 72 (126)
T ss_dssp CSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEE
T ss_pred CCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEec
Confidence 467999999999985444456666554 688877764
No 26
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=28.35 E-value=44 Score=26.28 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=17.8
Q ss_pred CCCCCCCCCEEEEE-EEeecCCcccc
Q 019373 249 EIPDIKPGYIVQLK-VVIPENKRRVS 273 (342)
Q Consensus 249 diPeFrpGDIV~V~-~~I~EnKeRvQ 273 (342)
+.+.|.+||+|+|. .++.+-+.+.|
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~~~G~~~ 82 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGEYNDRFQ 82 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEEETTEEE
T ss_pred cccccCCCCEEEEEEEEEEEECCEEE
Confidence 46799999999998 56665333333
No 27
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=27.93 E-value=48 Score=26.91 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=20.5
Q ss_pred CCCCCEEEEEEEeecCCcccceEEEEEE
Q 019373 253 IKPGYIVQLKVVIPENKRRVSTLKGIVI 280 (342)
Q Consensus 253 FrpGDIV~V~~~I~EnKeRvQ~FeGVVI 280 (342)
+.|||+|.+++++.+.+..+-.|+|.+.
T Consensus 107 V~PGd~L~i~~~v~~~~~~~~~~~~~~~ 134 (152)
T 4i83_A 107 VIPGDQLVFEVELLTSRRGIGKFNAVAK 134 (152)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 5899999999988765555556666543
No 28
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=27.25 E-value=1.1e+02 Score=25.54 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=22.7
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEEecC
Q 019373 251 PDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNA 285 (342)
Q Consensus 251 PeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnr 285 (342)
..|.+||.|+|. ..-..-|+|+|..+...
T Consensus 126 ~~~~~Gd~V~V~------~GPf~g~~G~v~~v~~~ 154 (181)
T 2jvv_A 126 TLFEPGEMVRVN------DGPFADFNGVVEEVDYE 154 (181)
T ss_dssp CCCCTTEEEEEC------SSTTTTEEEEEEEEETT
T ss_pred ccCCCCCEEEEe------ccCCCCcEEEEEEEeCC
Confidence 368999999884 33467899999999754
No 29
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=26.42 E-value=55 Score=26.17 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=19.0
Q ss_pred CCCCCCEEEEEEEeecCCccc--ceEEEEE
Q 019373 252 DIKPGYIVQLKVVIPENKRRV--STLKGIV 279 (342)
Q Consensus 252 eFrpGDIV~V~~~I~EnKeRv--Q~FeGVV 279 (342)
.++|||+|++++++.+.+.+. -.+++.+
T Consensus 106 pV~pGd~l~~~~~v~~~~~~~g~~~~~~~~ 135 (154)
T 1z6b_A 106 PVLPGDTLTMQANLISFKSSLGIAKLSGVG 135 (154)
T ss_dssp CCCTTCEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCceEEEEEEEE
Confidence 478899999999887733322 4555544
No 30
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=25.82 E-value=2.2e+02 Score=23.40 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=35.8
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEEe----cC--CCceeEEEEEeecCceEEEEEee----cCCccceEE
Q 019373 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARR----NA--GISTTFRLRRLVAGVGVESLFPL----YSPNILEIK 317 (342)
Q Consensus 250 iPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarR----nr--Gl~STFTLRnIi~GVGVEr~FpL----ySP~IksIE 317 (342)
..+||.|.+|.+. + ..+ .|+... ++ +---.+.+||+..|.-+|.+|+- .-|.|++.+
T Consensus 11 ~~~lrkG~~i~~~-----g----~p~--~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~ 77 (136)
T 1bkb_A 11 AGELKEGSYVVID-----G----EPC--RVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFT 77 (136)
T ss_dssp GGGCCTTCEEEET-----T----EEE--EEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEE
T ss_pred HHHccCCCEEEEC-----C----EEE--EEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEE
Confidence 3579999998763 1 011 223321 22 22347889999999999999994 445554433
No 31
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=25.09 E-value=41 Score=30.72 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=26.2
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceE----EEEEEEEec
Q 019373 249 EIPDIKPGYIVQLKVVIPENKRRVSTL----KGIVIARRN 284 (342)
Q Consensus 249 diPeFrpGDIV~V~~~I~EnKeRvQ~F----eGVVIarRn 284 (342)
..|.|.+||.|+|.-..+..-.|+..| +|+|....+
T Consensus 135 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~g 174 (226)
T 1ugp_B 135 RPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHG 174 (226)
T ss_dssp SCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEE
T ss_pred CCCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEec
Confidence 467999999999985444456666554 688887764
No 32
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=24.59 E-value=43 Score=30.42 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=25.9
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceE----EEEEEEEec
Q 019373 249 EIPDIKPGYIVQLKVVIPENKRRVSTL----KGIVIARRN 284 (342)
Q Consensus 249 diPeFrpGDIV~V~~~I~EnKeRvQ~F----eGVVIarRn 284 (342)
..|.|++||.|+|+-..+..-.|+..| +|+|.+..+
T Consensus 127 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 166 (219)
T 3qyh_B 127 ARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHG 166 (219)
T ss_dssp SCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEec
Confidence 458999999999975444456666554 688877764
No 33
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=23.24 E-value=97 Score=26.36 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=29.0
Q ss_pred CCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEEec
Q 019373 248 REIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRN 284 (342)
Q Consensus 248 kdiPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRn 284 (342)
+..|.-..||+|.|.++-.....|-+.+.+||+..+.
T Consensus 42 ~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtkk 78 (132)
T 1vq8_K 42 NRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRK 78 (132)
T ss_dssp TCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSS
T ss_pred cccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcCC
Confidence 4568889999999998765533477899999998763
No 34
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=23.08 E-value=47 Score=30.41 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceE----EEEEEEEec
Q 019373 249 EIPDIKPGYIVQLKVVIPENKRRVSTL----KGIVIARRN 284 (342)
Q Consensus 249 diPeFrpGDIV~V~~~I~EnKeRvQ~F----eGVVIarRn 284 (342)
..|.|.+||.|+|+-..+..-.|+..| +|+|..+.+
T Consensus 138 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 177 (229)
T 3hht_B 138 ASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYG 177 (229)
T ss_dssp SCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEec
Confidence 458999999999975444456666554 688887764
No 35
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=22.89 E-value=97 Score=23.71 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=17.7
Q ss_pred CCCCCCEEEEEEEeec--CCcccceEEEE
Q 019373 252 DIKPGYIVQLKVVIPE--NKRRVSTLKGI 278 (342)
Q Consensus 252 eFrpGDIV~V~~~I~E--nKeRvQ~FeGV 278 (342)
..+|||+|.++.++.+ .+.+...+++.
T Consensus 72 Pv~~Gd~l~~~a~v~~~~~~~~~~~v~~~ 100 (121)
T 2f41_A 72 QVKQGERVVAKAKVTAVEKEKGRTVVEVN 100 (121)
T ss_dssp CCBTTCEEEEEEEEEEECSSSSCEEEEEE
T ss_pred CcCCCCEEEEEEEEEEEEccCCEEEEEEE
Confidence 3679999999988873 34444444443
No 36
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.40 E-value=1.3e+02 Score=25.86 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=29.3
Q ss_pred CCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEEec
Q 019373 248 REIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRN 284 (342)
Q Consensus 248 kdiPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRn 284 (342)
+..|.-..||+|.|.++-.....|-+.+.+||+..+.
T Consensus 51 ~r~~~A~iGD~IvvsVKk~~p~~kg~V~kAVIVRtkk 87 (141)
T 3j21_J 51 RRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRK 87 (141)
T ss_dssp TCCCCBCSSCEEEEEEEEECTTTTTCEEEEEEEECSS
T ss_pred cccccCCcCCEEEEEEEecCCCCcCceEEEEEEEeCC
Confidence 3468889999999998765544467899999998764
No 37
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=21.81 E-value=63 Score=28.78 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=23.9
Q ss_pred CCCCCCC-CCCCEEEEEEEeecCCcccceEEEEEEEEecCC
Q 019373 247 QREIPDI-KPGYIVQLKVVIPENKRRVSTLKGIVIARRNAG 286 (342)
Q Consensus 247 kkdiPeF-rpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrG 286 (342)
...+|.+ .+||+|.++-- ++|.|.|-+.++-+.+
T Consensus 94 ~e~LP~V~~~GDIIlL~rv------kiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 94 GNDLPVIKQVGQPLLLHQI------TLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp SSCSCCCCSTTCEEEEEEE------EEEEETTEEEEEEEEE
T ss_pred hhhCCCCCCCCCEEEEEEE------EEEEECCeEEEEEcCc
Confidence 3589998 99999999832 2456666666665544
No 38
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=20.66 E-value=93 Score=23.84 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=14.6
Q ss_pred CCCCCCEEEEEEEeecCCcccc
Q 019373 252 DIKPGYIVQLKVVIPENKRRVS 273 (342)
Q Consensus 252 eFrpGDIV~V~~~I~EnKeRvQ 273 (342)
.|++||+|.|.=++.+...+++
T Consensus 63 ~i~~Gdvv~i~g~v~~~~~~~e 84 (97)
T 3e0e_A 63 EVKKGDIAEVSGYVKQGYSGLE 84 (97)
T ss_dssp CCCTTCEEEEEEEEEEC--CEE
T ss_pred ccCCCCEEEEEEEEEEcCCeEE
Confidence 7999999999766555433333
Done!