BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019375
         (342 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score =  105 bits (261), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query: 186 TKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYE 245
           T SE+D L+DGYRWRKYGQK VK +PYPRSYY+CT+  C V+K VER+  DP  V+TTYE
Sbjct: 10  TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 69

Query: 246 GQHNHQCPA 254
           G+HNH  PA
Sbjct: 70  GKHNHDLPA 78


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 54/73 (73%)

Query: 181 RFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVV 240
           R    T++  D + DGYRWRKYGQK+VK SPYPRSYYRC+S  C VKK VERS  D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 241 ITTYEGQHNHQCP 253
           ITTYEG+H+H  P
Sbjct: 62  ITTYEGKHDHDMP 74


>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
           Streptomyces Venezueale In Complex With D-glucose.
 pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
           Streptomyces Venezueale In Complex With D-glucose
          Length = 829

 Score = 27.7 bits (60), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 30  FFQDNNPSMYMNPPTPAVENLQAAAFDPTS 59
            + D NPS  +    PA EN  A A DPTS
Sbjct: 645 LYGDVNPSGKLTQSFPAAENQHAVAGDPTS 674


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,148,837
Number of Sequences: 62578
Number of extensions: 316746
Number of successful extensions: 309
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 3
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)