Query 019375
Match_columns 342
No_of_seqs 205 out of 725
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 15:06:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 7.2E-35 2.5E-39 229.8 3.9 75 180-254 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.1E-34 3.6E-39 229.9 2.8 75 180-254 4-78 (78)
3 2rpr_A Flywch-type zinc finger 45.6 7.2 0.00025 29.8 1.2 49 192-253 23-74 (87)
4 1cz6_A Protein (androctonin); 17.2 39 0.0013 21.6 0.7 8 215-222 16-23 (26)
5 1xiw_B T-cell surface glycopro 11.4 51 0.0017 25.1 -0.0 27 194-220 17-53 (79)
6 2vsd_A CHIR AB1; immune system 9.6 37 0.0013 25.3 -1.3 34 215-251 69-103 (105)
7 1qle_D Cytochrome AA3, ccytoch 8.1 1.3E+02 0.0046 21.0 1.1 18 65-83 1-18 (43)
8 3kgb_A Thymidylate synthase 1/ 7.5 77 0.0026 30.2 -0.4 12 194-205 113-124 (294)
9 3ed7_A Tsase, TS, thymidylate 7.4 77 0.0026 30.3 -0.5 12 194-205 116-127 (295)
10 1xiw_A T-cell surface glycopro 5.5 1.5E+02 0.0051 24.4 0.4 29 193-221 32-79 (105)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=7.2e-35 Score=229.84 Aligned_cols=75 Identities=60% Similarity=1.102 Sum_probs=72.5
Q ss_pred cceEEEeccccCCCCccchhhccCcccccCCCCCCcceeeccccchhhhhhhhhcCCCcEEEEEeCCCccCCCCc
Q 019375 180 PRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPA 254 (342)
Q Consensus 180 prv~~~T~sevd~ldDGY~WRKYGQK~IKgs~~PRsYYRCT~~~C~AkKqVQrs~~Dpsi~~vTY~G~HnH~~Ps 254 (342)
.||+|.|.+++++++|||+|||||||.|||+++||+|||||.++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999884
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.1e-34 Score=229.89 Aligned_cols=75 Identities=61% Similarity=1.117 Sum_probs=69.4
Q ss_pred cceEEEeccccCCCCccchhhccCcccccCCCCCCcceeeccccchhhhhhhhhcCCCcEEEEEeCCCccCCCCc
Q 019375 180 PRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPA 254 (342)
Q Consensus 180 prv~~~T~sevd~ldDGY~WRKYGQK~IKgs~~PRsYYRCT~~~C~AkKqVQrs~~Dpsi~~vTY~G~HnH~~Ps 254 (342)
.+++|.|.+++++++|||+|||||||.|||+++||+|||||+++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999873
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=45.63 E-value=7.2 Score=29.80 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=30.9
Q ss_pred CCCccchhhccCcccccCCCCCCcceeecc---ccchhhhhhhhhcCCCcEEEEEeCCCccCCCC
Q 019375 192 HLEDGYRWRKYGQKAVKNSPYPRSYYRCTS---QKCTVKKRVERSYQDPTVVITTYEGQHNHQCP 253 (342)
Q Consensus 192 ~ldDGY~WRKYGQK~IKgs~~PRsYYRCT~---~~C~AkKqVQrs~~Dpsi~~vTY~G~HnH~~P 253 (342)
.+-|||.-++--+ ...+.|.+|+. .+|.|+=.... + . +.-.+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~-~---~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H-R---IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T-E---EEECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C-C---EECCCCcCCCCc
Confidence 3478987665221 13468999996 48999743331 2 2 234688999764
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=17.21 E-value=39 Score=21.56 Aligned_cols=8 Identities=50% Similarity=1.447 Sum_probs=6.4
Q ss_pred cceeeccc
Q 019375 215 SYYRCTSQ 222 (342)
Q Consensus 215 sYYRCT~~ 222 (342)
.||+||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999963
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=11.38 E-value=51 Score=25.12 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=18.3
Q ss_pred CccchhhccCccc--------cc--CCCCCCcceeec
Q 019375 194 EDGYRWRKYGQKA--------VK--NSPYPRSYYRCT 220 (342)
Q Consensus 194 dDGY~WRKYGQK~--------IK--gs~~PRsYYRCT 220 (342)
..++.|.|-|... +. ...-||++|.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 4668899877641 22 234499999994
No 6
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=9.59 E-value=37 Score=25.30 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=14.5
Q ss_pred cceeecccc-chhhhhhhhhcCCCcEEEEEeCCCccCC
Q 019375 215 SYYRCTSQK-CTVKKRVERSYQDPTVVITTYEGQHNHQ 251 (342)
Q Consensus 215 sYYRCT~~~-C~AkKqVQrs~~Dpsi~~vTY~G~HnH~ 251 (342)
+-|+|...+ -+. ...++ .|+-.+.|+|.+.|-|.
T Consensus 69 G~Y~C~~~n~~~~-~~s~~--Sdpl~L~V~~~~~~~~~ 103 (105)
T 2vsd_A 69 GTYQCRYQVSEPL-WTSNQ--SDPVELVLTIEGRHHHH 103 (105)
T ss_dssp EEEEEEEEEETTE-EECCC--CCCEEECCC--------
T ss_pred eEEEEEEEcCCCC-cccCC--CCCEEEEEEEecccccc
Confidence 568887532 110 01122 47888999999998764
No 7
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=8.07 E-value=1.3e+02 Score=21.03 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=13.3
Q ss_pred cccccCCCCChhHHhhhhc
Q 019375 65 TDCLHGNSMDYTSLSRAFD 83 (342)
Q Consensus 65 ~d~l~~~~~d~~~~~~~f~ 83 (342)
+||-|| .|||..=.+.|+
T Consensus 1 ~~~~hG-~MD~~~hE~Ty~ 18 (43)
T 1qle_D 1 TDHKHG-EMDIRHQQATFA 18 (43)
T ss_dssp CCCCTT-CSCCHHHHHHHH
T ss_pred CCCCCC-CCChHHHHHHHH
Confidence 578888 999886555554
No 8
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=7.49 E-value=77 Score=30.23 Aligned_cols=12 Identities=33% Similarity=1.149 Sum_probs=9.4
Q ss_pred CccchhhccCcc
Q 019375 194 EDGYRWRKYGQK 205 (342)
Q Consensus 194 dDGY~WRKYGQK 205 (342)
.=|++||.+|-+
T Consensus 113 vYG~QwR~~~~~ 124 (294)
T 3kgb_A 113 IYGFQWRHFGAR 124 (294)
T ss_dssp CHHHHHHSBTCC
T ss_pred ccchhhhcCCCc
Confidence 347899999864
No 9
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=7.35 E-value=77 Score=30.28 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.6
Q ss_pred CccchhhccCcc
Q 019375 194 EDGYRWRKYGQK 205 (342)
Q Consensus 194 dDGY~WRKYGQK 205 (342)
.=|++||.+|.+
T Consensus 116 vYG~QwR~~~~~ 127 (295)
T 3ed7_A 116 VYGFQWRHFGAE 127 (295)
T ss_dssp CTHHHHHHBTCC
T ss_pred chhhhhhccCCc
Confidence 458999999865
No 10
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=5.55 E-value=1.5e+02 Score=24.35 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=18.8
Q ss_pred CCccchhhccCccc----------------ccCCCC---CCcceeecc
Q 019375 193 LEDGYRWRKYGQKA----------------VKNSPY---PRSYYRCTS 221 (342)
Q Consensus 193 ldDGY~WRKYGQK~----------------IKgs~~---PRsYYRCT~ 221 (342)
+.+...|.|-|+.. +.++-. ||.||+|..
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~ 79 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEcc
Confidence 34557888877542 334423 899999963
Done!