Query 019378
Match_columns 342
No_of_seqs 252 out of 1161
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1364 Predicted ubiquitin re 100.0 2E-35 4.3E-40 275.1 10.7 254 43-342 96-356 (356)
2 KOG1363 Predicted regulator of 100.0 7.3E-34 1.6E-38 279.8 10.6 286 47-342 147-460 (460)
3 cd02991 UAS_ETEA UAS family, E 100.0 6.5E-28 1.4E-32 198.0 14.7 114 62-175 1-116 (116)
4 smart00594 UAS UAS domain. 100.0 1.1E-27 2.3E-32 198.7 12.7 115 54-168 2-121 (122)
5 cd02958 UAS UAS family; UAS is 99.9 5.6E-27 1.2E-31 191.8 13.9 113 62-174 1-113 (114)
6 cd02990 UAS_FAF1 UAS family, F 99.9 1.4E-25 3E-30 187.7 13.9 114 62-175 1-136 (136)
7 KOG2507 Ubiquitin regulatory p 99.9 2.3E-22 5E-27 191.0 19.8 109 61-171 2-110 (506)
8 cd01770 p47_UBX p47-like ubiqu 99.9 2.5E-21 5.4E-26 148.1 10.4 77 263-342 3-79 (79)
9 cd01774 Faf1_like2_UBX Faf1 ik 99.8 2.5E-20 5.5E-25 144.3 10.0 79 262-342 2-84 (85)
10 cd01767 UBX UBX (ubiquitin reg 99.8 6.3E-20 1.4E-24 139.9 10.1 75 264-342 2-77 (77)
11 cd01773 Faf1_like1_UBX Faf1 ik 99.8 9.4E-20 2E-24 139.2 10.1 75 262-339 3-77 (82)
12 cd01771 Faf1_UBX Faf1 UBX doma 99.8 1.1E-19 2.3E-24 139.2 10.0 76 262-340 2-78 (80)
13 PF00789 UBX: UBX domain; Int 99.8 1.2E-18 2.5E-23 134.4 9.3 79 261-341 3-82 (82)
14 smart00166 UBX Domain present 99.8 1.9E-18 4.1E-23 132.7 10.0 76 263-341 3-80 (80)
15 cd01772 SAKS1_UBX SAKS1-like U 99.8 4.7E-18 1E-22 130.2 9.7 76 262-340 2-77 (79)
16 PF13899 Thioredoxin_7: Thiore 99.6 2.9E-15 6.2E-20 115.3 10.1 81 63-146 2-82 (82)
17 cd02960 AGR Anterior Gradient 99.6 6.8E-15 1.5E-19 122.5 7.7 95 61-159 6-100 (130)
18 cd02955 SSP411 TRX domain, SSP 99.5 1.3E-13 2.7E-18 114.6 12.4 90 68-158 5-100 (124)
19 cd02951 SoxW SoxW family; SoxW 99.5 3.2E-13 7E-18 111.8 12.9 109 66-174 1-121 (125)
20 cd02953 DsbDgamma DsbD gamma f 99.4 2.3E-12 5E-17 103.1 10.3 100 69-168 2-103 (104)
21 KOG2086 Protein tyrosine phosp 99.3 1.2E-12 2.7E-17 124.7 6.4 78 262-342 303-380 (380)
22 KOG2689 Predicted ubiquitin re 99.3 4.4E-12 9.5E-17 115.5 8.4 78 262-341 208-286 (290)
23 PF03190 Thioredox_DsbH: Prote 99.3 1.7E-11 3.8E-16 105.6 9.2 113 60-174 19-143 (163)
24 PF13098 Thioredoxin_2: Thiore 99.3 6E-12 1.3E-16 101.7 4.8 94 74-168 1-112 (112)
25 COG2143 Thioredoxin-related pr 99.2 1.6E-10 3.5E-15 97.5 10.6 106 67-173 31-150 (182)
26 cd02959 ERp19 Endoplasmic reti 99.2 6.5E-11 1.4E-15 97.3 7.3 103 66-173 7-114 (117)
27 PRK00293 dipZ thiol:disulfide 99.1 4E-10 8.7E-15 116.2 11.8 106 64-171 460-569 (571)
28 cd02950 TxlA TRX-like protein 99.0 3.7E-09 8E-14 89.8 12.3 100 72-175 14-113 (142)
29 cd02956 ybbN ybbN protein fami 98.8 1E-07 2.2E-12 74.7 11.4 94 66-168 2-95 (96)
30 KOG0910 Thioredoxin-like prote 98.8 8.5E-08 1.8E-12 81.2 10.7 105 59-173 42-149 (150)
31 cd02997 PDI_a_PDIR PDIa family 98.7 1.4E-07 2.9E-12 74.7 10.7 90 73-167 12-103 (104)
32 PRK10996 thioredoxin 2; Provis 98.7 2.9E-07 6.2E-12 77.9 12.7 94 71-171 45-138 (139)
33 cd02985 TRX_CDSP32 TRX family, 98.7 2.4E-07 5.3E-12 74.1 11.5 93 66-169 5-100 (103)
34 cd02949 TRX_NTR TRX domain, no 98.7 3.2E-07 7E-12 72.3 12.0 95 66-168 2-96 (97)
35 PF00085 Thioredoxin: Thioredo 98.6 5.7E-07 1.2E-11 70.6 11.3 97 64-170 6-102 (103)
36 cd02948 TRX_NDPK TRX domain, T 98.6 7.6E-07 1.7E-11 71.0 12.0 87 74-169 13-100 (102)
37 cd02993 PDI_a_APS_reductase PD 98.6 5.4E-07 1.2E-11 72.7 10.1 96 65-166 9-107 (109)
38 PHA02278 thioredoxin-like prot 98.6 1E-06 2.2E-11 70.8 11.5 83 76-166 12-99 (103)
39 cd02984 TRX_PICOT TRX domain, 98.6 6.9E-07 1.5E-11 69.9 10.2 93 66-168 4-96 (97)
40 cd02963 TRX_DnaJ TRX domain, D 98.5 1.3E-06 2.8E-11 70.8 11.3 98 65-169 9-109 (111)
41 COG4232 Thiol:disulfide interc 98.5 4.3E-07 9.3E-12 91.7 10.0 100 70-171 464-567 (569)
42 cd03002 PDI_a_MPD1_like PDI fa 98.5 8.9E-07 1.9E-11 70.8 9.6 99 64-168 7-108 (109)
43 TIGR01068 thioredoxin thioredo 98.5 2.8E-06 6.2E-11 66.3 12.2 89 76-171 12-100 (101)
44 cd02961 PDI_a_family Protein D 98.4 1.9E-06 4E-11 66.8 9.9 91 70-166 7-99 (101)
45 TIGR01126 pdi_dom protein disu 98.4 3.3E-06 7.1E-11 66.2 11.1 95 65-170 4-100 (102)
46 TIGR00385 dsbE periplasmic pro 98.4 1.2E-06 2.6E-11 76.6 9.3 93 74-173 59-172 (173)
47 cd03004 PDI_a_ERdj5_C PDIa fam 98.4 2.7E-06 5.9E-11 67.6 10.3 93 65-166 9-102 (104)
48 cd02954 DIM1 Dim1 family; Dim1 98.4 6.4E-06 1.4E-10 67.3 12.5 85 77-171 13-110 (114)
49 PLN00410 U5 snRNP protein, DIM 98.4 3.6E-06 7.8E-11 71.4 11.3 102 65-174 12-122 (142)
50 KOG0907 Thioredoxin [Posttrans 98.4 4.2E-06 9.2E-11 67.6 10.8 92 64-166 7-100 (106)
51 cd03006 PDI_a_EFP1_N PDIa fami 98.4 3.9E-06 8.5E-11 68.6 10.6 96 63-166 15-111 (113)
52 cd02947 TRX_family TRX family; 98.4 5E-06 1.1E-10 63.0 10.2 86 73-168 5-92 (93)
53 COG1331 Highly conserved prote 98.4 1.7E-06 3.7E-11 88.8 9.6 92 60-152 25-122 (667)
54 PRK09381 trxA thioredoxin; Pro 98.3 7E-06 1.5E-10 65.8 11.3 96 66-171 12-107 (109)
55 cd03000 PDI_a_TMX3 PDIa family 98.3 5.2E-06 1.1E-10 66.2 10.3 96 66-170 4-102 (104)
56 cd02999 PDI_a_ERp44_like PDIa 98.3 3.3E-06 7.1E-11 67.3 8.6 84 75-166 15-98 (100)
57 cd02996 PDI_a_ERp44 PDIa famil 98.3 7.7E-06 1.7E-10 65.6 10.5 92 64-166 8-106 (108)
58 cd03003 PDI_a_ERdj5_N PDIa fam 98.3 8.7E-06 1.9E-10 64.4 10.2 91 65-166 9-99 (101)
59 PTZ00051 thioredoxin; Provisio 98.3 1.6E-05 3.4E-10 62.3 11.0 85 69-164 9-95 (98)
60 cd03011 TlpA_like_ScsD_MtbDsbE 98.2 4E-06 8.7E-11 68.5 7.3 93 71-167 13-121 (123)
61 PRK15412 thiol:disulfide inter 98.2 1.6E-05 3.4E-10 70.4 11.4 92 76-174 66-178 (185)
62 cd02986 DLP Dim1 family, Dim1- 98.2 2.7E-05 5.9E-10 63.4 11.1 96 65-172 3-111 (114)
63 cd02957 Phd_like Phosducin (Ph 98.2 1.4E-05 3E-10 64.9 9.1 82 65-158 12-95 (113)
64 cd03005 PDI_a_ERp46 PDIa famil 98.1 3.2E-05 7E-10 60.7 10.6 90 65-166 8-100 (102)
65 TIGR02738 TrbB type-F conjugat 98.1 2.1E-05 4.6E-10 67.7 10.2 118 47-171 20-152 (153)
66 cd02994 PDI_a_TMX PDIa family, 98.1 3.1E-05 6.7E-10 61.1 10.3 92 64-169 8-100 (101)
67 TIGR02740 TraF-like TraF-like 98.1 3.9E-05 8.5E-10 72.1 12.7 110 58-173 140-265 (271)
68 cd02995 PDI_a_PDI_a'_C PDIa fa 98.1 2.1E-05 4.5E-10 61.9 9.3 90 66-166 9-102 (104)
69 TIGR01295 PedC_BrcD bacterioci 98.1 5E-05 1.1E-09 62.8 11.9 93 66-167 12-119 (122)
70 cd02998 PDI_a_ERp38 PDIa famil 98.1 1.7E-05 3.7E-10 62.5 8.5 94 65-166 8-103 (105)
71 cd03065 PDI_b_Calsequestrin_N 98.1 5.5E-05 1.2E-09 62.5 11.3 97 64-172 16-119 (120)
72 PTZ00443 Thioredoxin domain-co 98.1 4.2E-05 9.1E-10 69.9 11.5 105 62-173 35-140 (224)
73 cd02989 Phd_like_TxnDC9 Phosdu 98.1 4.6E-05 1E-09 62.1 10.6 78 71-158 15-94 (113)
74 cd03001 PDI_a_P5 PDIa family, 98.1 6.5E-05 1.4E-09 59.1 11.0 86 76-167 16-101 (103)
75 cd03010 TlpA_like_DsbE TlpA-li 98.0 2.3E-05 5.1E-10 64.5 8.5 86 72-164 19-126 (127)
76 PRK03147 thiol-disulfide oxido 98.0 4.4E-05 9.6E-10 66.1 10.6 96 72-170 55-170 (173)
77 cd02975 PfPDO_like_N Pyrococcu 98.0 0.0001 2.2E-09 60.1 11.5 95 71-173 15-111 (113)
78 cd02965 HyaE HyaE family; HyaE 98.0 0.00022 4.8E-09 58.0 12.5 101 49-165 4-109 (111)
79 cd02987 Phd_like_Phd Phosducin 97.9 4.8E-05 1E-09 66.9 9.1 82 65-158 71-154 (175)
80 cd03009 TryX_like_TryX_NRX Try 97.9 8.4E-05 1.8E-09 61.5 9.2 74 74-154 14-115 (131)
81 COG3118 Thioredoxin domain-con 97.9 9.8E-05 2.1E-09 69.2 9.9 103 63-173 29-131 (304)
82 cd02962 TMX2 TMX2 family; comp 97.8 0.00018 3.8E-09 61.9 10.6 81 65-157 36-126 (152)
83 cd02966 TlpA_like_family TlpA- 97.8 7.9E-05 1.7E-09 58.6 7.1 80 71-157 12-116 (116)
84 TIGR01130 ER_PDI_fam protein d 97.8 0.00017 3.6E-09 72.0 10.8 98 65-173 9-110 (462)
85 TIGR00424 APS_reduc 5'-adenyly 97.8 0.0002 4.3E-09 72.0 11.3 114 51-169 344-460 (463)
86 cd03008 TryX_like_RdCVF Trypar 97.8 8.2E-05 1.8E-09 63.5 7.3 74 74-154 21-128 (146)
87 PTZ00102 disulphide isomerase; 97.8 0.00017 3.6E-09 72.7 10.6 98 64-173 39-139 (477)
88 cd02992 PDI_a_QSOX PDIa family 97.7 0.00023 5E-09 58.0 9.1 77 64-146 8-87 (114)
89 PRK14018 trifunctional thiored 97.7 0.00024 5.3E-09 72.3 11.2 90 77-169 55-170 (521)
90 cd02982 PDI_b'_family Protein 97.7 0.00021 4.6E-09 56.2 8.5 89 78-171 12-102 (103)
91 TIGR02739 TraF type-F conjugat 97.7 0.00058 1.3E-08 63.5 11.9 92 78-175 150-251 (256)
92 PF13905 Thioredoxin_8: Thiore 97.6 0.00029 6.3E-09 54.7 8.2 70 78-151 1-95 (95)
93 cd02964 TryX_like_family Trypa 97.6 0.00034 7.4E-09 58.2 8.8 79 69-154 8-115 (132)
94 cd02952 TRP14_like Human TRX-r 97.6 0.00031 6.8E-09 57.9 8.2 63 77-145 20-98 (119)
95 PTZ00062 glutaredoxin; Provisi 97.6 0.00075 1.6E-08 60.8 10.8 77 77-172 16-94 (204)
96 PRK13703 conjugal pilus assemb 97.6 0.00073 1.6E-08 62.6 10.9 92 78-175 143-244 (248)
97 PTZ00102 disulphide isomerase; 97.6 0.0003 6.4E-09 70.9 9.1 103 63-174 363-467 (477)
98 PLN02309 5'-adenylylsulfate re 97.6 0.0007 1.5E-08 68.1 11.6 113 52-170 339-455 (457)
99 PF13728 TraF: F plasmid trans 97.5 0.00092 2E-08 60.8 11.1 86 77-168 119-214 (215)
100 PRK13728 conjugal transfer pro 97.5 0.00097 2.1E-08 58.9 10.4 86 82-174 73-173 (181)
101 PLN02919 haloacid dehalogenase 97.5 0.00069 1.5E-08 75.0 11.0 92 77-175 419-539 (1057)
102 cd02988 Phd_like_VIAF Phosduci 97.5 0.0018 3.8E-08 57.9 11.6 89 55-158 81-171 (192)
103 KOG0908 Thioredoxin-like prote 97.4 0.00091 2E-08 61.2 9.0 91 73-174 16-108 (288)
104 cd02969 PRX_like1 Peroxiredoxi 97.3 0.0023 5.1E-08 55.5 10.9 96 77-176 24-156 (171)
105 cd02967 mauD Methylamine utili 97.3 0.0015 3.3E-08 52.3 9.0 72 77-152 20-109 (114)
106 TIGR02187 GlrX_arch Glutaredox 97.3 0.0016 3.6E-08 58.9 10.1 90 77-174 19-113 (215)
107 PHA02125 thioredoxin-like prot 97.3 0.0018 3.8E-08 48.6 8.1 72 81-168 1-73 (75)
108 cd03012 TlpA_like_DipZ_like Tl 97.3 0.0012 2.6E-08 54.3 7.9 81 71-158 16-125 (126)
109 PTZ00056 glutathione peroxidas 97.3 0.0024 5.1E-08 57.3 10.3 94 74-174 35-180 (199)
110 TIGR02661 MauD methylamine deh 97.3 0.0029 6.3E-08 56.1 10.5 89 75-174 71-180 (189)
111 cd03017 PRX_BCP Peroxiredoxin 97.1 0.0049 1.1E-07 51.1 10.3 87 77-166 22-137 (140)
112 TIGR00411 redox_disulf_1 small 97.1 0.0063 1.4E-07 45.6 9.5 76 82-171 3-81 (82)
113 PLN02399 phospholipid hydroper 97.0 0.0076 1.6E-07 55.6 11.3 35 138-173 201-235 (236)
114 cd03007 PDI_a_ERp29_N PDIa fam 97.0 0.0047 1E-07 50.7 8.7 93 64-169 8-113 (116)
115 cd01806 Nedd8 Nebb8-like ubiq 97.0 0.0053 1.2E-07 45.7 8.3 69 266-341 2-71 (76)
116 TIGR01130 ER_PDI_fam protein d 97.0 0.0034 7.5E-08 62.5 9.4 99 62-171 351-453 (462)
117 PLN02412 probable glutathione 96.9 0.0077 1.7E-07 52.4 10.0 94 77-173 28-165 (167)
118 PF11543 UN_NPL4: Nuclear pore 96.9 0.002 4.4E-08 49.2 5.6 72 264-338 4-75 (80)
119 cd00340 GSH_Peroxidase Glutath 96.9 0.0058 1.2E-07 52.1 8.8 26 140-166 125-150 (152)
120 cd01809 Scythe_N Ubiquitin-lik 96.8 0.0064 1.4E-07 44.7 7.4 70 265-341 1-71 (72)
121 cd01792 ISG15_repeat1 ISG15 ub 96.8 0.01 2.2E-07 45.2 8.6 72 265-341 3-75 (80)
122 PF08534 Redoxin: Redoxin; In 96.8 0.0078 1.7E-07 50.5 8.8 78 76-160 26-136 (146)
123 PRK11509 hydrogenase-1 operon 96.8 0.011 2.5E-07 49.4 9.2 114 45-174 8-126 (132)
124 cd01763 Sumo Small ubiquitin-r 96.7 0.02 4.4E-07 44.3 9.9 74 260-340 7-81 (87)
125 KOG2501 Thioredoxin, nucleored 96.7 0.0069 1.5E-07 52.0 7.7 83 66-152 21-129 (157)
126 cd01807 GDX_N ubiquitin-like d 96.7 0.011 2.5E-07 44.1 7.8 69 266-341 2-71 (74)
127 TIGR01626 ytfJ_HI0045 conserve 96.6 0.021 4.6E-07 50.6 10.4 87 73-166 54-174 (184)
128 PRK09437 bcp thioredoxin-depen 96.6 0.023 5E-07 48.2 10.4 92 76-171 28-151 (154)
129 cd01791 Ubl5 UBL5 ubiquitin-li 96.6 0.023 5.1E-07 42.6 8.9 70 265-341 2-72 (73)
130 TIGR02540 gpx7 putative glutat 96.6 0.032 7E-07 47.4 10.9 35 136-171 114-152 (153)
131 cd03015 PRX_Typ2cys Peroxiredo 96.5 0.019 4E-07 50.0 9.2 96 72-170 23-155 (173)
132 PRK10382 alkyl hydroperoxide r 96.5 0.04 8.7E-07 49.0 11.3 90 77-169 30-153 (187)
133 TIGR02187 GlrX_arch Glutaredox 96.5 0.025 5.5E-07 51.1 10.2 83 75-170 129-214 (215)
134 PTZ00044 ubiquitin; Provisiona 96.4 0.017 3.7E-07 43.1 7.5 69 266-341 2-71 (76)
135 cd01794 DC_UbP_C dendritic cel 96.4 0.015 3.3E-07 43.2 6.9 66 267-339 1-67 (70)
136 KOG2244 Highly conserved prote 96.4 0.0045 9.8E-08 62.2 4.9 94 51-147 88-187 (786)
137 TIGR00412 redox_disulf_2 small 96.3 0.023 5.1E-07 42.6 7.7 69 83-168 3-75 (76)
138 TIGR03137 AhpC peroxiredoxin. 96.3 0.023 4.9E-07 50.3 8.8 90 76-168 29-152 (187)
139 cd01803 Ubiquitin Ubiquitin. U 96.3 0.026 5.6E-07 41.9 7.6 69 266-341 2-71 (76)
140 PRK15000 peroxidase; Provision 96.2 0.033 7.1E-07 50.0 9.4 90 77-169 33-159 (200)
141 cd01804 midnolin_N Ubiquitin-l 96.1 0.041 8.9E-07 41.6 8.0 68 265-340 2-70 (78)
142 cd01798 parkin_N amino-termina 96.1 0.029 6.3E-07 41.3 7.0 67 267-340 1-68 (70)
143 PF00578 AhpC-TSA: AhpC/TSA fa 96.0 0.037 8E-07 44.6 8.1 70 77-153 24-123 (124)
144 cd01810 ISG15_repeat2 ISG15 ub 95.9 0.046 9.9E-07 40.8 7.3 68 267-341 1-69 (74)
145 cd01814 NTGP5 Ubiquitin-like N 95.8 0.025 5.4E-07 45.8 5.9 64 263-332 3-73 (113)
146 cd01805 RAD23_N Ubiquitin-like 95.7 0.07 1.5E-06 39.8 7.9 67 266-339 2-71 (77)
147 PRK00522 tpx lipid hydroperoxi 95.7 0.11 2.5E-06 44.9 10.2 89 73-168 39-165 (167)
148 cd01802 AN1_N ubiquitin-like d 95.7 0.085 1.8E-06 42.3 8.6 72 263-341 26-98 (103)
149 cd01808 hPLIC_N Ubiquitin-like 95.7 0.078 1.7E-06 39.2 7.8 69 265-341 1-70 (71)
150 cd01812 BAG1_N Ubiquitin-like 95.6 0.079 1.7E-06 38.8 7.5 68 265-340 1-69 (71)
151 cd03026 AhpF_NTD_C TRX-GRX-lik 95.6 0.17 3.7E-06 39.3 9.6 81 74-166 7-88 (89)
152 PRK13190 putative peroxiredoxi 95.6 0.11 2.3E-06 46.7 9.7 93 76-171 25-153 (202)
153 PF11976 Rad60-SLD: Ubiquitin- 95.5 0.086 1.9E-06 38.8 7.6 68 265-339 1-70 (72)
154 PF00240 ubiquitin: Ubiquitin 95.5 0.064 1.4E-06 39.1 6.8 63 270-339 1-64 (69)
155 KOG0191 Thioredoxin/protein di 95.5 0.084 1.8E-06 52.0 9.5 96 72-174 41-136 (383)
156 cd01796 DDI1_N DNA damage indu 95.4 0.08 1.7E-06 39.2 6.9 67 267-339 1-69 (71)
157 PF13881 Rad60-SLD_2: Ubiquiti 95.4 0.1 2.2E-06 42.5 7.9 64 264-333 2-72 (111)
158 PTZ00253 tryparedoxin peroxida 95.3 0.13 2.8E-06 45.9 9.4 90 76-168 34-160 (199)
159 KOG0190 Protein disulfide isom 95.3 0.057 1.2E-06 54.6 7.6 100 63-170 31-130 (493)
160 cd02971 PRX_family Peroxiredox 95.1 0.19 4.1E-06 41.4 9.3 80 77-159 21-130 (140)
161 cd03014 PRX_Atyp2cys Peroxired 94.9 0.14 3.1E-06 42.6 7.9 75 77-158 25-129 (143)
162 PTZ00256 glutathione peroxidas 94.8 0.38 8.3E-06 42.3 10.7 38 135-173 142-182 (183)
163 cd02968 SCO SCO (an acronym fo 94.8 0.15 3.2E-06 42.2 7.7 22 76-97 20-42 (142)
164 PRK10606 btuE putative glutath 94.4 0.44 9.6E-06 42.2 10.1 71 71-150 18-102 (183)
165 KOG0912 Thiol-disulfide isomer 94.2 0.13 2.9E-06 48.6 6.5 92 78-173 13-107 (375)
166 PTZ00137 2-Cys peroxiredoxin; 94.1 0.35 7.6E-06 45.3 9.4 90 77-169 97-222 (261)
167 cd02970 PRX_like2 Peroxiredoxi 94.0 0.57 1.2E-05 38.8 9.7 48 78-127 24-71 (149)
168 cd03018 PRX_AhpE_like Peroxire 94.0 0.48 1E-05 39.5 9.2 83 73-158 22-133 (149)
169 PRK13191 putative peroxiredoxi 93.9 0.41 9E-06 43.4 9.2 91 77-170 32-159 (215)
170 cd01659 TRX_superfamily Thiore 93.9 0.15 3.3E-06 34.2 5.1 61 82-146 1-62 (69)
171 cd01797 NIRF_N amino-terminal 93.8 0.41 8.8E-06 36.2 7.6 69 266-341 2-73 (78)
172 smart00213 UBQ Ubiquitin homol 93.8 0.27 5.9E-06 34.7 6.4 62 266-335 2-63 (64)
173 cd01769 UBL Ubiquitin-like dom 93.8 0.44 9.6E-06 34.1 7.6 66 269-341 2-68 (69)
174 PRK11657 dsbG disulfide isomer 93.8 0.27 5.8E-06 45.7 7.9 92 70-169 109-249 (251)
175 PF14836 Ubiquitin_3: Ubiquiti 93.6 0.3 6.4E-06 38.0 6.5 62 276-339 15-77 (88)
176 PRK13189 peroxiredoxin; Provis 93.5 0.32 6.9E-06 44.4 7.8 91 77-170 34-161 (222)
177 PRK10877 protein disulfide iso 93.4 0.48 1E-05 43.5 8.8 88 71-170 100-229 (232)
178 PF13848 Thioredoxin_6: Thiore 93.3 0.62 1.3E-05 40.1 9.0 89 75-168 91-182 (184)
179 cd02973 TRX_GRX_like Thioredox 93.3 0.42 9.1E-06 34.2 6.7 56 82-143 3-58 (67)
180 cd03016 PRX_1cys Peroxiredoxin 93.2 0.46 9.9E-06 42.6 8.3 90 77-169 23-151 (203)
181 cd01793 Fubi Fubi ubiquitin-li 92.8 0.87 1.9E-05 33.8 7.9 67 266-341 2-69 (74)
182 PRK13599 putative peroxiredoxi 92.4 1 2.2E-05 40.8 9.3 90 77-169 27-153 (215)
183 TIGR02196 GlrX_YruB Glutaredox 92.2 1.2 2.7E-05 31.7 8.1 68 82-167 2-72 (74)
184 cd00196 UBQ Ubiquitin-like pro 91.7 0.95 2.1E-05 30.3 6.7 64 269-339 2-66 (69)
185 PF13192 Thioredoxin_3: Thiore 91.3 1.8 3.9E-05 32.2 8.2 69 85-168 5-75 (76)
186 KOG4277 Uncharacterized conser 91.2 0.51 1.1E-05 44.7 6.0 102 63-171 29-131 (468)
187 cd01790 Herp_N Homocysteine-re 91.0 1.6 3.5E-05 33.2 7.6 71 265-341 2-78 (79)
188 TIGR00601 rad23 UV excision re 90.9 0.87 1.9E-05 44.9 7.7 67 266-339 2-72 (378)
189 PF02114 Phosducin: Phosducin; 90.9 1.6 3.4E-05 41.0 9.1 102 66-177 135-239 (265)
190 cd01813 UBP_N UBP ubiquitin pr 90.1 2.2 4.7E-05 31.9 7.6 69 266-339 2-71 (74)
191 COG0526 TrxA Thiol-disulfide i 89.9 1.6 3.4E-05 33.1 7.1 80 78-166 32-118 (127)
192 PF08817 YukD: WXG100 protein 89.5 1 2.2E-05 34.0 5.4 71 264-339 2-77 (79)
193 cd01800 SF3a120_C Ubiquitin-li 89.0 1.8 3.9E-05 32.3 6.5 62 273-341 6-68 (76)
194 PF14560 Ubiquitin_2: Ubiquiti 88.8 3.6 7.7E-05 31.5 8.2 74 265-339 2-80 (87)
195 PF06110 DUF953: Eukaryotic pr 88.3 0.76 1.6E-05 37.8 4.3 74 66-145 7-97 (119)
196 KOG0190 Protein disulfide isom 87.9 1.5 3.2E-05 44.7 6.8 97 64-175 373-472 (493)
197 COG1225 Bcp Peroxiredoxin [Pos 87.5 8 0.00017 33.4 10.2 96 71-170 23-154 (157)
198 PF02809 UIM: Ubiquitin intera 86.0 0.99 2.1E-05 24.4 2.5 16 205-220 2-17 (18)
199 PF14595 Thioredoxin_9: Thiore 86.0 1.2 2.7E-05 37.0 4.4 76 75-158 38-117 (129)
200 TIGR03143 AhpF_homolog putativ 85.5 6.9 0.00015 40.5 10.6 83 72-168 469-554 (555)
201 KOG3414 Component of the U4/U6 85.4 14 0.00031 30.7 10.1 98 70-173 13-121 (142)
202 PF00462 Glutaredoxin: Glutare 85.4 2.5 5.3E-05 29.6 5.2 51 83-143 2-55 (60)
203 cd01815 BMSC_UbP_N Ubiquitin-l 85.2 2.8 6E-05 31.6 5.5 53 282-340 18-73 (75)
204 cd01799 Hoil1_N Ubiquitin-like 84.9 3.9 8.5E-05 30.6 6.3 63 270-339 8-72 (75)
205 KOG1731 FAD-dependent sulfhydr 84.8 0.87 1.9E-05 46.7 3.4 112 53-173 33-154 (606)
206 cd02983 P5_C P5 family, C-term 84.6 5.2 0.00011 33.2 7.5 66 106-174 49-117 (130)
207 cd03020 DsbA_DsbC_DsbG DsbA fa 83.3 2.7 5.9E-05 37.1 5.7 91 68-167 67-196 (197)
208 KOG0191 Thioredoxin/protein di 83.0 3.6 7.7E-05 40.5 6.9 96 73-174 157-254 (383)
209 TIGR02180 GRX_euk Glutaredoxin 82.9 2 4.3E-05 31.8 4.0 56 83-143 2-60 (84)
210 PF09379 FERM_N: FERM N-termin 82.7 4.5 9.8E-05 30.0 5.9 64 269-333 1-65 (80)
211 KOG2792 Putative cytochrome C 82.3 3.7 8.1E-05 38.2 6.2 48 127-175 216-278 (280)
212 TIGR02200 GlrX_actino Glutared 82.3 14 0.00031 26.5 8.5 70 82-168 2-75 (77)
213 cd03028 GRX_PICOT_like Glutare 80.4 6.9 0.00015 30.0 6.4 56 78-145 7-70 (90)
214 PF11470 TUG-UBL1: GLUT4 regul 79.4 6.1 0.00013 28.9 5.3 59 271-336 3-61 (65)
215 cd03419 GRX_GRXh_1_2_like Glut 78.7 10 0.00023 27.8 6.7 55 83-145 3-60 (82)
216 smart00726 UIM Ubiquitin-inter 78.1 2.4 5.2E-05 25.2 2.3 19 205-223 1-19 (26)
217 PRK15317 alkyl hydroperoxide r 77.7 19 0.00041 36.9 10.4 88 71-170 108-196 (517)
218 smart00295 B41 Band 4.1 homolo 76.9 21 0.00045 31.1 9.2 70 264-333 3-72 (207)
219 PF11009 DUF2847: Protein of u 76.8 28 0.00061 28.0 8.9 81 76-164 17-104 (105)
220 COG5100 NPL4 Nuclear pore prot 76.5 10 0.00023 37.4 7.4 74 266-341 2-78 (571)
221 cd01801 Tsc13_N Ubiquitin-like 74.6 14 0.00031 27.5 6.4 55 282-340 20-75 (77)
222 PLN02560 enoyl-CoA reductase 73.5 23 0.00051 33.9 9.1 72 266-340 2-81 (308)
223 cd01789 Alp11_N Ubiquitin-like 73.0 37 0.00081 25.7 8.5 74 265-340 2-79 (84)
224 TIGR00365 monothiol glutaredox 73.0 15 0.00033 28.7 6.5 54 78-143 11-73 (97)
225 cd02976 NrdH NrdH-redoxin (Nrd 72.7 18 0.00038 25.4 6.4 66 82-165 2-70 (73)
226 TIGR03140 AhpF alkyl hydropero 72.7 28 0.00062 35.6 10.2 91 69-171 107-198 (515)
227 PF05768 DUF836: Glutaredoxin- 71.7 21 0.00046 26.7 6.8 79 82-169 2-81 (81)
228 cd03073 PDI_b'_ERp72_ERp57 PDI 70.9 23 0.00051 28.4 7.3 63 105-171 42-110 (111)
229 KOG0911 Glutaredoxin-related p 70.2 2.4 5.2E-05 38.5 1.4 88 60-161 5-92 (227)
230 cd01795 USP48_C USP ubiquitin- 70.0 14 0.00031 29.4 5.5 56 280-341 20-75 (107)
231 cd03029 GRX_hybridPRX5 Glutare 69.9 19 0.0004 26.0 6.0 51 83-145 4-57 (72)
232 KOG3425 Uncharacterized conser 68.7 15 0.00033 30.3 5.6 74 65-145 13-103 (128)
233 KOG1364 Predicted ubiquitin re 68.2 0.92 2E-05 43.7 -1.7 79 74-152 7-93 (356)
234 KOG2456 Aldehyde dehydrogenase 67.3 6.4 0.00014 39.0 3.7 40 51-90 333-372 (477)
235 cd02066 GRX_family Glutaredoxi 67.3 25 0.00055 24.3 6.2 50 84-143 4-56 (72)
236 cd03072 PDI_b'_ERp44 PDIb' fam 66.5 18 0.00039 29.0 5.8 60 111-173 47-109 (111)
237 TIGR02181 GRX_bact Glutaredoxi 66.5 19 0.0004 26.4 5.5 50 84-143 3-55 (79)
238 cd03027 GRX_DEP Glutaredoxin ( 66.3 25 0.00055 25.4 6.1 51 83-143 4-57 (73)
239 cd03418 GRX_GRXb_1_3_like Glut 66.1 24 0.00052 25.3 6.0 50 83-142 3-56 (75)
240 TIGR02183 GRXA Glutaredoxin, G 66.1 25 0.00055 26.6 6.3 53 82-145 2-64 (86)
241 cd01777 SNX27_RA Ubiquitin dom 65.3 14 0.00031 28.6 4.6 34 265-298 2-35 (87)
242 PF02966 DIM1: Mitosis protein 64.0 58 0.0012 27.3 8.3 92 75-173 17-118 (133)
243 PF07449 HyaE: Hydrogenase-1 e 62.7 32 0.0007 27.7 6.4 85 63-160 15-103 (107)
244 KOG1672 ATP binding protein [P 62.0 13 0.00028 33.3 4.3 84 67-159 74-157 (211)
245 PHA03050 glutaredoxin; Provisi 61.4 28 0.00061 27.8 6.0 54 79-143 13-75 (108)
246 cd03013 PRX5_like Peroxiredoxi 60.4 32 0.00069 29.2 6.5 67 77-146 28-98 (155)
247 PF03413 PepSY: Peptidase prop 58.3 58 0.0013 22.4 7.0 60 66-155 3-64 (64)
248 TIGR02190 GlrX-dom Glutaredoxi 58.1 41 0.00088 24.9 6.0 51 82-143 10-63 (79)
249 PF01216 Calsequestrin: Calseq 56.1 66 0.0014 31.5 8.3 100 64-173 41-145 (383)
250 PRK10824 glutaredoxin-4; Provi 55.3 50 0.0011 26.9 6.5 70 67-152 4-81 (115)
251 PRK11200 grxA glutaredoxin 1; 54.8 54 0.0012 24.4 6.3 52 82-143 3-64 (85)
252 PRK10329 glutaredoxin-like pro 53.8 60 0.0013 24.4 6.4 67 83-167 4-72 (81)
253 PRK10638 glutaredoxin 3; Provi 52.9 53 0.0011 24.4 6.0 51 83-143 5-58 (83)
254 PTZ00062 glutaredoxin; Provisi 52.8 47 0.001 29.9 6.5 88 45-152 84-179 (204)
255 COG1999 Uncharacterized protei 52.3 1.2E+02 0.0026 27.2 9.1 36 137-173 170-205 (207)
256 KOG0010 Ubiquitin-like protein 51.7 47 0.001 33.8 6.9 70 263-340 14-84 (493)
257 cd04598 CBS_pair_GGDEF_assoc T 49.7 73 0.0016 24.5 6.7 60 101-165 58-117 (119)
258 COG3531 Predicted protein-disu 48.5 40 0.00087 30.3 5.2 46 126-173 163-210 (212)
259 TIGR02194 GlrX_NrdH Glutaredox 48.1 59 0.0013 23.4 5.4 63 84-165 3-69 (72)
260 PF00571 CBS: CBS domain CBS d 46.8 35 0.00077 22.9 3.9 56 106-169 1-56 (57)
261 PF08207 EFP_N: Elongation fac 46.6 34 0.00074 24.1 3.7 26 262-287 32-58 (58)
262 PF02401 LYTB: LytB protein; 46.3 66 0.0014 30.5 6.7 104 64-173 167-279 (281)
263 KOG1752 Glutaredoxin and relat 43.9 32 0.0007 27.5 3.6 61 79-152 14-78 (104)
264 KOG0011 Nucleotide excision re 41.9 86 0.0019 30.3 6.6 67 266-339 2-71 (340)
265 KOG3171 Conserved phosducin-li 41.7 27 0.00058 31.8 3.1 113 55-177 133-252 (273)
266 cd04606 CBS_pair_Mg_transporte 38.4 1.3E+02 0.0029 22.7 6.4 95 64-166 5-107 (109)
267 COG0695 GrxC Glutaredoxin and 37.3 1.7E+02 0.0038 21.7 6.8 67 83-166 4-75 (80)
268 PTZ00381 aldehyde dehydrogenas 37.2 27 0.00058 35.7 2.8 44 48-91 336-379 (493)
269 TIGR02189 GlrX-like_plant Glut 37.1 1.4E+02 0.003 23.2 6.3 53 80-145 9-68 (99)
270 cd03069 PDI_b_ERp57 PDIb famil 37.0 2E+02 0.0043 22.4 8.7 89 66-168 7-100 (104)
271 PRK01045 ispH 4-hydroxy-3-meth 36.1 1.3E+02 0.0027 28.9 6.9 107 63-175 167-282 (298)
272 KOG0005 Ubiquitin-like protein 35.8 92 0.002 22.4 4.4 66 266-338 2-67 (70)
273 COG1453 Predicted oxidoreducta 35.7 2.2E+02 0.0047 28.2 8.4 74 67-149 132-207 (391)
274 cd01760 RBD Ubiquitin-like dom 34.4 1.3E+02 0.0029 22.3 5.4 44 267-311 2-45 (72)
275 PF01323 DSBA: DSBA-like thior 32.9 1.2E+02 0.0026 25.9 5.9 36 128-169 158-193 (193)
276 PF09673 TrbC_Ftype: Type-F co 32.6 82 0.0018 25.4 4.4 40 129-168 63-112 (113)
277 PF13778 DUF4174: Domain of un 31.5 2.8E+02 0.006 22.4 7.7 45 127-176 67-112 (118)
278 PF13462 Thioredoxin_4: Thiore 30.7 1.2E+02 0.0025 25.1 5.3 40 124-170 123-162 (162)
279 cd01787 GRB7_RA RA (RAS-associ 30.6 2.5E+02 0.0055 21.7 6.5 51 265-315 3-53 (85)
280 cd07079 ALDH_F18-19_ProA-GPR G 30.5 39 0.00084 33.6 2.6 48 49-96 302-349 (406)
281 cd03023 DsbA_Com1_like DsbA fa 30.0 1.1E+02 0.0025 24.7 5.0 34 128-168 120-153 (154)
282 PF02196 RBD: Raf-like Ras-bin 29.8 1.4E+02 0.0031 21.9 4.9 44 266-310 2-45 (71)
283 PF07912 ERp29_N: ERp29, N-ter 29.6 1.6E+02 0.0034 24.5 5.5 55 113-168 54-115 (126)
284 TIGR00216 ispH_lytB (E)-4-hydr 29.1 2.1E+02 0.0045 27.1 7.1 70 104-173 200-278 (280)
285 PRK12360 4-hydroxy-3-methylbut 28.7 2.1E+02 0.0045 27.1 7.0 103 63-173 168-279 (281)
286 COG0231 Efp Translation elonga 27.6 94 0.002 25.9 4.0 34 256-290 31-65 (131)
287 PLN02174 aldehyde dehydrogenas 27.3 50 0.0011 33.8 2.8 49 48-96 342-390 (484)
288 PF13848 Thioredoxin_6: Thiore 26.8 3.8E+02 0.0081 22.4 8.5 60 105-171 14-74 (184)
289 cd04640 CBS_pair_27 The CBS do 26.7 3.1E+02 0.0067 21.3 7.3 98 64-165 9-124 (126)
290 TIGR02742 TrbC_Ftype type-F co 26.6 1.3E+02 0.0028 25.1 4.7 41 129-169 63-112 (130)
291 TIGR01092 P5CS delta l-pyrroli 26.5 43 0.00093 36.0 2.2 48 50-97 588-635 (715)
292 PRK00197 proA gamma-glutamyl p 26.3 49 0.0011 33.0 2.5 46 51-96 310-355 (417)
293 PF07319 DnaI_N: Primosomal pr 25.1 43 0.00094 26.1 1.5 22 92-113 20-41 (94)
294 cd01818 TIAM1_RBD Ubiquitin do 24.7 1.7E+02 0.0037 22.1 4.4 39 269-308 4-42 (77)
295 PRK13730 conjugal transfer pil 24.7 1.3E+02 0.0028 27.2 4.6 39 129-170 154-192 (212)
296 smart00455 RBD Raf-like Ras-bi 24.1 2.6E+02 0.0057 20.4 5.4 43 267-310 2-44 (70)
297 PF13019 Telomere_Sde2: Telome 24.0 2.3E+02 0.0051 24.6 5.8 47 265-311 1-51 (162)
298 cd03023 DsbA_Com1_like DsbA fa 23.6 1.9E+02 0.0042 23.2 5.3 29 77-111 4-32 (154)
299 cd03031 GRX_GRX_like Glutaredo 23.2 2.7E+02 0.0059 23.6 6.1 53 81-143 2-66 (147)
300 TIGR03143 AhpF_homolog putativ 23.1 8.2E+02 0.018 25.2 10.9 101 61-174 347-456 (555)
301 cd03024 DsbA_FrnE DsbA family, 23.0 1.8E+02 0.0039 25.1 5.2 35 128-168 166-200 (201)
302 PRK12426 elongation factor P; 22.7 1.2E+02 0.0026 26.9 3.9 34 256-290 29-63 (185)
303 PF13743 Thioredoxin_5: Thiore 22.5 78 0.0017 27.5 2.8 35 127-161 137-171 (176)
304 TIGR00407 proA gamma-glutamyl 22.4 65 0.0014 32.0 2.5 58 51-118 302-359 (398)
305 cd02981 PDI_b_family Protein D 22.3 3.3E+02 0.0072 20.2 9.0 89 66-168 6-94 (97)
306 cd07141 ALDH_F1AB_F2_RALDH1 NA 22.3 67 0.0014 32.6 2.6 46 50-95 383-428 (481)
307 cd07104 ALDH_BenzADH-like ALDH 21.8 61 0.0013 32.1 2.2 45 51-95 334-378 (431)
308 PRK00087 4-hydroxy-3-methylbut 21.7 2.8E+02 0.006 29.5 7.2 103 64-174 166-277 (647)
309 KOG2699 Predicted ubiquitin re 21.6 22 0.00048 35.3 -1.0 36 263-298 316-351 (407)
310 PF10671 TcpQ: Toxin co-regula 21.5 74 0.0016 24.0 2.1 35 54-88 34-72 (84)
311 cd07108 ALDH_MGR_2402 Magnetos 21.3 71 0.0015 32.1 2.6 44 51-94 360-403 (457)
312 cd07105 ALDH_SaliADH Salicylal 20.7 68 0.0015 32.0 2.3 42 50-91 334-375 (432)
313 PRK15265 subtilase cytotoxin s 20.7 68 0.0015 26.7 1.8 42 63-115 72-116 (134)
314 cd03019 DsbA_DsbA DsbA family, 20.2 2E+02 0.0044 24.0 4.9 41 128-173 134-174 (178)
315 PF03736 EPTP: EPTP domain; I 20.0 47 0.001 21.8 0.7 28 130-157 17-44 (44)
316 cd02012 TPP_TK Thiamine pyroph 20.0 3.8E+02 0.0081 24.5 6.9 87 64-150 141-230 (255)
No 1
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-35 Score=275.11 Aligned_cols=254 Identities=40% Similarity=0.773 Sum_probs=192.9
Q ss_pred ccchhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC
Q 019378 43 TADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD 122 (342)
Q Consensus 43 ~~~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~ 122 (342)
+..+++.+|.++|+||..|+|.|+++.|+..|.++.+|||| +.+
T Consensus 96 ~~~~~~srL~slfrpp~~i~~~gsld~ak~~a~sk~~wllV------------------------------------~~D 139 (356)
T KOG1364|consen 96 EHASSQSRLASLFRPPTDILSHGSLDAAKSTASSKQRWLLV------------------------------------LDD 139 (356)
T ss_pred hhccccchhhhhcCCCcchhhcCChhhhhhcccccceEEEE------------------------------------eec
Confidence 34566889999999999999999999999999999999999 467
Q ss_pred ChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCccccCCCC
Q 019378 123 TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDK 202 (342)
Q Consensus 123 s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 202 (342)
+.+|.++..+|++.++|+|+||||+||+.|++|.|.+.+..|+..|..|++.++.++-+.+...|++... ...-
T Consensus 140 tseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~~d~vas~t~n~~~p~~------e~~~ 213 (356)
T KOG1364|consen 140 TSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSCPHDEVASLTRNRKRPKT------EPTC 213 (356)
T ss_pred cCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcCCccccccccccccCCCC------Cccc
Confidence 8889999999999999999999999999999999999999999999999999988765544333322110 1111
Q ss_pred ch-hHHHHHHHHHHHhHHHhhccCCCCCCCccccCcch-hhhhcc-cCCCCCCCCCCCCC--CCCCeeEEEEECCCCceE
Q 019378 203 PD-IENEELLQALAASMETIKDASGVSSSDTDVASTDK-DEASAT-EKPAYPILPEEPKV--DRSLLCRVGVRLPDGRRM 277 (342)
Q Consensus 203 r~-eqde~~e~Al~asle~~~~~~~~~ee~~~~~~~e~-~ee~~~-~~~~~~~l~~EP~~--~~~~~~~i~iRlP~G~r~ 277 (342)
.. +||.+++.|+..|+-.-.-. .+.+..-..-++ .|.... ..-..+.+..||.. +.+-+|+|+||||||+|.
T Consensus 214 ~ss~e~~~~elai~~sv~~~~~~---~e~e~~~~s~~ee~e~~~e~~~~~~~~a~~ep~~~~~~svvt~i~vR~pdG~R~ 290 (356)
T KOG1364|consen 214 LSSEEDMQMELAIKNSVVNPSSG---TEFEGQGASDEEELETVLEEDLFVFPVATVEPKGDCDRSVVTSIQVRFPDGRRK 290 (356)
T ss_pred cccccchhhhcccccccccCCCc---ccccCCCCcccchhhccccccccccceeeecCCCCCCccceeEEEEecCCccHH
Confidence 22 36766777877776542211 011110111111 111000 01123334444433 345688899999999999
Q ss_pred EEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCc--eEEEEeC
Q 019378 278 QRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA--MISVTWE 342 (342)
Q Consensus 278 ~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~--~l~v~w~ 342 (342)
+|+|..+++++.||.||.++.+|++...|+|++.||++ +++.++.+.||+++||+|+ .+.++|+
T Consensus 291 qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~-k~l~~~~daT~~eaGL~nS~~~~~~e~e 356 (356)
T KOG1364|consen 291 QRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPAS-KTLDYGADATFKEAGLANSETLLSVEWE 356 (356)
T ss_pred HHhhccccHHHHHHHHHHHhhcccccccceeeecccch-hhhhccccchHHHhccCccccccccccC
Confidence 99999999999999999999999999999999999976 5888889999999999998 5677774
No 2
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-34 Score=279.78 Aligned_cols=286 Identities=20% Similarity=0.282 Sum_probs=206.0
Q ss_pred hHHHHHHhhCCCCcCcccccHHHHHHHHHHc----CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC
Q 019378 47 SRDNLASLYRPPFHLMFNGSFEKAKDAASVQ----DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD 122 (342)
Q Consensus 47 ~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~----~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~ 122 (342)
+.+.|.++|+.+++.||.|.+..|...|... .|+|++|+|++...++..||..||||+.|++||+++||+|.+|+.
T Consensus 147 f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~dvt 226 (460)
T KOG1363|consen 147 FVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLRENFLLWGWDVT 226 (460)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHhhceeeeccccc
Confidence 7899999999999999999999888888444 699999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCC----------------CCcEEEEEeCC-CC-ceEEEEeCCCChHHHHHHHHhhhhcCCCccccccc
Q 019378 123 TSEGKKVCTYYKLD----------------SIPVVLVVDPI-TG-QKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVS 184 (342)
Q Consensus 123 s~eg~~~~~~y~v~----------------~~P~l~ii~p~-tG-~~l~~~~G~~~~~~~l~~L~~~l~~~~~~~~~~~~ 184 (342)
+++++.+.+.+.+. .||.+.++... +. +++..++|.++.++.+..+..++..+....
T Consensus 227 ~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~~----- 301 (460)
T KOG1363|consen 227 ESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEERRL----- 301 (460)
T ss_pred CchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHH-----
Confidence 99999998888776 46655554321 11 234455566666666555555555432211
Q ss_pred CCCCCCCCCCccccCCCCchhHHHHHHHHHHHhHHHhhccCCCCCCCc---cccCcc-hhhhhcccCCCCCCCCCCCCCC
Q 019378 185 HKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETIKDASGVSSSDT---DVASTD-KDEASATEKPAYPILPEEPKVD 260 (342)
Q Consensus 185 ~~r~~~~~~~~~~~~~~~r~eqde~~e~Al~asle~~~~~~~~~ee~~---~~~~~e-~~ee~~~~~~~~~~l~~EP~~~ 260 (342)
+.+...+ ..+. ....+.++||.+|++.+++|..+..+.+...++.+ ++++++ ++|....+.+....||+||++.
T Consensus 302 q~~~~~~-~er~-~r~~~~~eQd~eyq~sle~Dr~r~~e~e~~~e~~r~e~er~~~~ee~e~~R~~l~~es~lp~EP~a~ 379 (460)
T KOG1363|consen 302 QMRRSEQ-DERE-ARLALEQEQDDEYQASLEADRVREAEAEQAAEEFRLEKERKEEEEERETARQLLALESSLPPEPSAS 379 (460)
T ss_pred hhcccch-hHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHhhhccCCCCCCcC
Confidence 1111110 0000 01124456788888888888766111111111111 111111 1122222345567899999778
Q ss_pred CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC--ceEE
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN--AMIS 338 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~--~~l~ 338 (342)
.+++++|+||+|+|.|..|||.++++++.||+||.++ +..+..|.|.++|||+.+. ......||++.||++ .+|.
T Consensus 380 ~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~--~~~~~e~~~~~~fPr~~~~-~~~~~~sl~~~~l~p~qe~lf 456 (460)
T KOG1363|consen 380 EEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSN--GFHPEEYSLNTSFPRRPLG-DYEHSSSLQDIGLTPRQETLF 456 (460)
T ss_pred cccceeeEEECCCCCeeeeeeecccchhHHHHHHHhc--cCCchhhccccCCCccccc-ccccccccccCCcccccceee
Confidence 8899999999999999999999999999999999997 5678899999999999732 235689999999985 7788
Q ss_pred EEeC
Q 019378 339 VTWE 342 (342)
Q Consensus 339 v~w~ 342 (342)
++|.
T Consensus 457 lE~~ 460 (460)
T KOG1363|consen 457 LEEI 460 (460)
T ss_pred eecC
Confidence 8873
No 3
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.95 E-value=6.5e-28 Score=198.01 Aligned_cols=114 Identities=23% Similarity=0.417 Sum_probs=109.1
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
||+|||++|++.||++.|+||||||++.|.+|..||++||+|++|+++|++|||+|++|+.++||+++++.+++.+||++
T Consensus 1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL 80 (116)
T ss_pred CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCc--eEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 142 LVVDPITGQ--KMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 142 ~ii~p~tG~--~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+||+|++++ ++.++.|++++++|+..|..+++.+
T Consensus 81 ~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 81 AMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred EEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 999987664 6899999999999999999998753
No 4
>smart00594 UAS UAS domain.
Probab=99.95 E-value=1.1e-27 Score=198.72 Aligned_cols=115 Identities=49% Similarity=0.756 Sum_probs=107.7
Q ss_pred hhCCCC-cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHh
Q 019378 54 LYRPPF-HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTY 132 (342)
Q Consensus 54 ~f~pp~-~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~ 132 (342)
.|.||. |.||.|+|++|++.|++++|+++||||++||.+|+.|||+||+|++|+++|++|||+|++|+++++|..+++.
T Consensus 2 ~~~~~~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~ 81 (122)
T smart00594 2 LFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQF 81 (122)
T ss_pred CCCCCCCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHh
Confidence 355555 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEeCCCCc----eEEEEeCCCChHHHHHHH
Q 019378 133 YKLDSIPVVLVVDPITGQ----KMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~----~l~~~~G~~~~~~~l~~L 168 (342)
|++.+||+++||+|.+|+ ++.++.|.+++++|+..|
T Consensus 82 ~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 82 YKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 999999999999998764 467889999999999876
No 5
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.95 E-value=5.6e-27 Score=191.82 Aligned_cols=113 Identities=48% Similarity=0.900 Sum_probs=109.9
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
||.|+|++|++.|++++||||||||++||.+|+.|+++||+|++|+++|++|||+|.+|+++++|.+++..|++..+|++
T Consensus 1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI 80 (114)
T ss_pred CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+||+|++|+++.++.|.+++++|+..|..+++.
T Consensus 81 ~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 81 AIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred EEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 999998899999999999999999999998764
No 6
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=99.93 E-value=1.4e-25 Score=187.73 Aligned_cols=114 Identities=23% Similarity=0.297 Sum_probs=105.9
Q ss_pred cccccHHHHHHHH----HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh------------
Q 019378 62 MFNGSFEKAKDAA----SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE------------ 125 (342)
Q Consensus 62 ~f~gs~~eA~~~A----k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e------------ 125 (342)
||.|+|++|++.| +++.|+|+||||++.+.+|..||+++|||+.|++||++|||+|++|++.++
T Consensus 1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~ 80 (136)
T cd02990 1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRH 80 (136)
T ss_pred CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhh
Confidence 7999999999999 999999999999999999999999999999999999999999999999987
Q ss_pred ----HHHHHHhCCCCCCcEEEEEeCCCC--ceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 126 ----GKKVCTYYKLDSIPVVLVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 126 ----g~~~~~~y~v~~~P~l~ii~p~tG--~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+.+.++.+++.+||+++||.+..+ +++.+++|.+++++++..|..+++.+
T Consensus 81 ~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~~ 136 (136)
T cd02990 81 FGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEMF 136 (136)
T ss_pred hhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 455677889999999999998655 57899999999999999999998753
No 7
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=99.90 E-value=2.3e-22 Score=191.01 Aligned_cols=109 Identities=21% Similarity=0.388 Sum_probs=102.9
Q ss_pred CcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
+||.|++.+|+..||..++.++|||.+++ ..++.|+|-+|.+..|.+.+...||...+...+..+.+|+..|++..+|+
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~gdd-E~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs 80 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISGDD-EESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPS 80 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEecCc-hHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccc
Confidence 69999999999999999999999999975 56899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
+++|+- +|..|.++.|++++++|...|..+
T Consensus 81 ~ffIg~-sGtpLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 81 IFFIGF-SGTPLEVITGFVTADELASSIEKV 110 (506)
T ss_pred eeeecC-CCceeEEeeccccHHHHHHHHHHH
Confidence 999995 899999999999999998877655
No 8
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.86 E-value=2.5e-21 Score=148.08 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=69.7
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEeC
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w~ 342 (342)
++|+|+||||||+|++|||+.+++|++||+||.++.++....+|.|+++||++. +.++ ++||+|+||.|++|+++|.
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~--l~~~-~~Tl~eagL~~s~v~q~~~ 79 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKE--LSDE-SLTLKEANLLNAVIVQRLK 79 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcc--cCCC-CCcHHHCCCcCcEEEEEeC
Confidence 579999999999999999999999999999999876554568999999999986 6544 9999999999999999994
No 9
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.83 E-value=2.5e-20 Score=144.35 Aligned_cols=79 Identities=19% Similarity=0.381 Sum_probs=68.5
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCcccc----CCCcCCChhhcCCcCceE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSL----DYDSKLTFEDSGLANAMI 337 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l----~~~~~~Tl~e~gL~~~~l 337 (342)
+++|+|+||||||+|++|||+.+++|++||+||.+. +..+.+|+|+++|||+.+.- ..+.++||+|+||.++.+
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~--~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~ 79 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL--KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEV 79 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC--CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccE
Confidence 568999999999999999999999999999999764 55678999999999997321 136789999999999888
Q ss_pred EEEeC
Q 019378 338 SVTWE 342 (342)
Q Consensus 338 ~v~w~ 342 (342)
++++|
T Consensus 80 L~V~d 84 (85)
T cd01774 80 LFVQD 84 (85)
T ss_pred EEEec
Confidence 88875
No 10
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=99.82 E-value=6.3e-20 Score=139.89 Aligned_cols=75 Identities=28% Similarity=0.558 Sum_probs=68.2
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCC-CcCCChhhcCCcCceEEEEeC
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDY-DSKLTFEDSGLANAMISVTWE 342 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~-~~~~Tl~e~gL~~~~l~v~w~ 342 (342)
+|+|+||||||++++|+|+.+++|++||+||.++ +....+|.|+++|||+. +.+ +.++||+|+||.|++++|+|.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~--~~~~~~f~L~t~~Pr~~--~~~~~~~~TL~e~gL~~s~~~~~~~ 77 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESN--GPPAEPFTLMTSFPRRV--LTDLDYELTLQEAGLVNEVVFQRLK 77 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHc--CCCCCCEEEEeCCCCcc--CCCCCccCcHHHcCCccceEEEEeC
Confidence 7999999999999999999999999999999987 34478899999999997 443 589999999999999999994
No 11
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.82 E-value=9.4e-20 Score=139.15 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=66.4
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV 339 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v 339 (342)
.++|+|+||||||+|++|||..+++|++||.||.++ ++++.+|+|+|+||||++.- .+.++||+|+||.|..+++
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~--g~~~~~f~L~t~FPRr~~~~-~d~~~TL~e~GL~P~~~Lf 77 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQSK--GYPNERFELLTNFPRRKLSH-LDYDITLQEAGLCPQETVF 77 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCCCCEEEecCCCCcccCC-cccCCCHHHcCCCCCcEEE
Confidence 568999999999999999999999999999999985 77889999999999998543 4678999999999755444
No 12
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.81 E-value=1.1e-19 Score=139.25 Aligned_cols=76 Identities=22% Similarity=0.449 Sum_probs=66.5
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~ 340 (342)
+++|+|+||||||+|++|||+.+++|++||+||.++ +++..+|+|+++|||+++. ..+.++||+|+||.+ ++|.|+
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~--~~~~~~f~L~t~fPRk~~~-~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK--GYPIDEYKLLSSWPRRDLT-QLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCCCCEEEecCCCCCCCc-CCCCCCcHHHcCCCCCcEEEEE
Confidence 468999999999999999999999999999999886 7778899999999999843 247789999999996 555553
No 13
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=99.77 E-value=1.2e-18 Score=134.35 Aligned_cols=79 Identities=38% Similarity=0.563 Sum_probs=66.1
Q ss_pred CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
+++.|+|+||||||++++|+|+.+++|++||+||..+........|.|+++|||+. +..+.++||+|+||. +++|+|
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~--l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRE--LTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEE--CCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcC--CCccccccHHHhcCCCCeEEEE
Confidence 46799999999999999999999999999999999986443333499999999986 433337999999998 688899
Q ss_pred Ee
Q 019378 340 TW 341 (342)
Q Consensus 340 ~w 341 (342)
+|
T Consensus 81 ~~ 82 (82)
T PF00789_consen 81 EK 82 (82)
T ss_dssp E-
T ss_pred EC
Confidence 98
No 14
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=99.77 E-value=1.9e-18 Score=132.73 Aligned_cols=76 Identities=26% Similarity=0.494 Sum_probs=65.4
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCC-CcCCChhhcCCc-CceEEEE
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDY-DSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~-~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+.|+|+||||||+|++|+|+.+++|++||+||.... +....+|+|+++|||+. +.. +.++||+|+||. +++|+|+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~-~~~~~~f~L~t~~Prk~--l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAAL-TDGNDPFTLNSPFPRRT--FTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcc-cCCCCCEEEEeCCCCcC--CccccccCCHHHCCCCCceEEEEe
Confidence 589999999999999999999999999999996643 44567899999999986 433 458999999998 5778887
Q ss_pred e
Q 019378 341 W 341 (342)
Q Consensus 341 w 341 (342)
|
T Consensus 80 ~ 80 (80)
T smart00166 80 P 80 (80)
T ss_pred C
Confidence 7
No 15
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.76 E-value=4.7e-18 Score=130.17 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=64.7
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~ 340 (342)
.+.|+|+||||||++++++|+.+++|++||+||.++ +....+|.|+++|||+.+.. .+.++||+|+||.|+.++++
T Consensus 2 ~~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~--~~~~~~f~L~t~fPrk~~~~-~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 2 YTETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELN--TGNGGPFTLMTPFPRKVFTE-DDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred CcEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHc--CCCCCCEEEEeCCCCeECCc-ccccCCHHHCCCCCceEEEE
Confidence 357999999999999999999999999999999986 33458899999999997332 36789999999997665543
No 16
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.62 E-value=2.9e-15 Score=115.29 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=72.6
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
+..+|++|++.|++++|||||+|+++||..|+.|.+.+|.++.|.++++++||++.+|+++.+....... ..+|+++
T Consensus 2 W~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~ 78 (82)
T PF13899_consen 2 WQSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFF 78 (82)
T ss_dssp EESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEE
T ss_pred hhhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEE
Confidence 4578999999999999999999999999999999999999999999999999999999988776542222 4599999
Q ss_pred EEeC
Q 019378 143 VVDP 146 (342)
Q Consensus 143 ii~p 146 (342)
|++|
T Consensus 79 ~ldp 82 (82)
T PF13899_consen 79 FLDP 82 (82)
T ss_dssp EEET
T ss_pred EeCC
Confidence 9997
No 17
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.56 E-value=6.8e-15 Score=122.51 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=80.1
Q ss_pred CcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
+-|..+|++|++.|++++|+|||+|+++||.+|+.|.+.+|.+++|.++++++||...++.+.++.. +. . ....+|+
T Consensus 6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~-~~-~-~g~~vPt 82 (130)
T cd02960 6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN-LS-P-DGQYVPR 82 (130)
T ss_pred ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC-cC-c-cCcccCe
Confidence 4456699999999999999999999999999999999999999999999999999888887654311 10 1 2246999
Q ss_pred EEEEeCCCCceEEEEeCCC
Q 019378 141 VLVVDPITGQKMRSWCGMV 159 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~ 159 (342)
+++++| +|+++.++.|+.
T Consensus 83 ivFld~-~g~vi~~i~Gy~ 100 (130)
T cd02960 83 IMFVDP-SLTVRADITGRY 100 (130)
T ss_pred EEEECC-CCCCcccccccc
Confidence 999998 689988888853
No 18
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.53 E-value=1.3e-13 Score=114.58 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-H-HH----HhCCCCCCcEE
Q 019378 68 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-K-VC----TYYKLDSIPVV 141 (342)
Q Consensus 68 ~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-~-~~----~~y~v~~~P~l 141 (342)
++|++.|++++|+|||+|+++||.+|+.|.+.||.+++|.++|+++||++.+|++..... + +. ..|++.++|++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 578999999999999999999999999999999999999999999999999998653211 1 21 25789999999
Q ss_pred EEEeCCCCceEEEEeCC
Q 019378 142 LVVDPITGQKMRSWCGM 158 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~ 158 (342)
+|++| +|+.+..-.+.
T Consensus 85 vfl~~-~G~~~~~~~~~ 100 (124)
T cd02955 85 VFLTP-DLKPFFGGTYF 100 (124)
T ss_pred EEECC-CCCEEeeeeec
Confidence 99998 68988766554
No 19
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.50 E-value=3.2e-13 Score=111.77 Aligned_cols=109 Identities=21% Similarity=0.293 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHcC-CeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh-----------hHHHHHHhC
Q 019378 66 SFEKAKDAASVQD-KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-----------EGKKVCTYY 133 (342)
Q Consensus 66 s~~eA~~~Ak~~~-K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~-----------eg~~~~~~y 133 (342)
++-++++.|++++ |++||+|+++||..|+.|...++.++.+...++++|+++.++++.. ....++..|
T Consensus 1 ~~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 1 DLYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred ChHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 3568899999999 9999999999999999999999999999999999999999998754 346788999
Q ss_pred CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 134 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 134 ~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
++.++|+++|+++..|+++.++.|..+.+.|...|..+++.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99999999999984379999999999999998888887764
No 20
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.40 E-value=2.3e-12 Score=103.10 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh--hHHHHHHhCCCCCCcEEEEEeC
Q 019378 69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKLDSIPVVLVVDP 146 (342)
Q Consensus 69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~--eg~~~~~~y~v~~~P~l~ii~p 146 (342)
+++..|.+++|++||+|+.+||..|+.|...++.++.+.+.+++++++..+|++.. ....+++.|++.++|+++|+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 56778889999999999999999999999888899999999988999999998643 2567999999999999999997
Q ss_pred CCCceEEEEeCCCChHHHHHHH
Q 019378 147 ITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 147 ~tG~~l~~~~G~~~~~~~l~~L 168 (342)
-+|+.+.++.|+.+.++|...|
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccCHHHHHHHh
Confidence 4578888999999999987765
No 21
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=99.34 E-value=1.2e-12 Score=124.72 Aligned_cols=78 Identities=22% Similarity=0.352 Sum_probs=71.3
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEe
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 341 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w 341 (342)
.+++.|||||+||+|++-+|+.++||.+||.||...-++.....|.|+++||.+. | .|.+.||++|||.|++|+++|
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~--l-~D~sqTle~AgL~Nsvlvqr~ 379 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKP--L-SDDSQTLEEAGLLNSVLVQRL 379 (380)
T ss_pred CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcc--c-CCcchhHHhccchhhhhhhhc
Confidence 5689999999999999999999999999999999987776677899999999986 6 479999999999999999988
Q ss_pred C
Q 019378 342 E 342 (342)
Q Consensus 342 ~ 342 (342)
.
T Consensus 380 ~ 380 (380)
T KOG2086|consen 380 A 380 (380)
T ss_pred C
Confidence 3
No 22
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.4e-12 Score=115.48 Aligned_cols=78 Identities=18% Similarity=0.363 Sum_probs=67.3
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCce-EEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~-l~v~ 340 (342)
...|+||||||||+++...|+..++|..|..||..+. +.+..+|.|+++|||+.|+- +|..++|+++||.+++ |++.
T Consensus 208 ys~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~-~~~~~P~~f~t~fPR~tf~e-dD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 208 YSQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNR-GDGLDPYSFHTGFPRVTFTE-DDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred ccceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhc-cCCCCCeeeecCCCceeccc-ccccccHHHhccccchheecc
Confidence 4799999999999999999999999999999999874 33456999999999998654 5889999999999755 5555
Q ss_pred e
Q 019378 341 W 341 (342)
Q Consensus 341 w 341 (342)
|
T Consensus 286 ~ 286 (290)
T KOG2689|consen 286 P 286 (290)
T ss_pred c
Confidence 4
No 23
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.27 E-value=1.7e-11 Score=105.63 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=73.6
Q ss_pred cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-HH----H-HhC
Q 019378 60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-KV----C-TYY 133 (342)
Q Consensus 60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-~~----~-~~y 133 (342)
++=+..-.++|++.|++++|+|||.|..++|..|++|.++++.|++|.++||++||...+|.+..... .+ + ...
T Consensus 19 ~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~ 98 (163)
T PF03190_consen 19 PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMS 98 (163)
T ss_dssp SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhc
Confidence 44566777899999999999999999999999999999999999999999999999999998763321 11 1 122
Q ss_pred CCCCCcEEEEEeCCCCceEEEEeCCCCh------HHHHHHHHhhhhc
Q 019378 134 KLDSIPVVLVVDPITGQKMRSWCGMVQP------ESLLEDLVPFMDG 174 (342)
Q Consensus 134 ~v~~~P~l~ii~p~tG~~l~~~~G~~~~------~~~l~~L~~~l~~ 174 (342)
+..++|..++++| .|+.+.. .++..+ ..|+..|..+-+.
T Consensus 99 ~~gGwPl~vfltP-dg~p~~~-~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 99 GSGGWPLTVFLTP-DGKPFFG-GTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp S---SSEEEEE-T-TS-EEEE-ESS--SS-BTTB--HHHHHHHHHHH
T ss_pred CCCCCCceEEECC-CCCeeee-eeecCCCCCCCCccHHHHHHHHHHH
Confidence 7889999999999 6887644 234444 3566655555443
No 24
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.25 E-value=6e-12 Score=101.70 Aligned_cols=94 Identities=21% Similarity=0.320 Sum_probs=78.4
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh------------------HHHHHHhCCC
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE------------------GKKVCTYYKL 135 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e------------------g~~~~~~y~v 135 (342)
|+.++|+++|+|+++||..|+.|...++.+.++...+++++.++.+++.... ...++..|++
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 4678999999999999999999999999999999999989999998887654 2357889999
Q ss_pred CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378 136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
..+|+++++|+ .|+++.++.|++++++|++.|
T Consensus 81 ~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence 99999999995 699999999999999998765
No 25
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.6e-10 Score=97.48 Aligned_cols=106 Identities=19% Similarity=0.266 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh--------------HHHHHHh
Q 019378 67 FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------GKKVCTY 132 (342)
Q Consensus 67 ~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e--------------g~~~~~~ 132 (342)
.-++.+.|..++|.||+.|.++.|..|..|.+++...+.+++++..||+++.+++.... -..+++.
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 45777888999999999999999999999999999999999999999999999886532 2468999
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
|+|.++|++++.|. +|+.+..+.|+++|+.|+..|.-+-+
T Consensus 111 f~vrstPtfvFfdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 111 FAVRSTPTFVFFDK-TGKTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred hccccCceEEEEcC-CCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999996 89999999999999999987654433
No 26
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.17 E-value=6.5e-11 Score=97.34 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCC--CcEEEE
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLV 143 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~--~P~l~i 143 (342)
+|++|++.|+.++|++||+|+.+||.+|+.|...+...+.+.. ++.+||.+.++.+... ....|++.+ +|++++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~---~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEP---KDEEFSPDGGYIPRILF 82 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCc---hhhhcccCCCccceEEE
Confidence 7999999999999999999999999999999988777667655 6778998876654321 234677765 999999
Q ss_pred EeCCCCceEEE---EeCCCChHHHHHHHHhhhh
Q 019378 144 VDPITGQKMRS---WCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 144 i~p~tG~~l~~---~~G~~~~~~~l~~L~~~l~ 173 (342)
++| +|+++.+ ..|+...+.|.+.|..+.+
T Consensus 83 ~~~-~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 83 LDP-SGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred ECC-CCCCchhhccCCCCccccccCCCHHHHHh
Confidence 998 6888764 4466677777665555543
No 27
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.11 E-value=4e-10 Score=116.16 Aligned_cols=106 Identities=16% Similarity=0.285 Sum_probs=94.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhHHHHHHhCCCCCCcEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg~~~~~~y~v~~~P~l 141 (342)
..+++++++.|+.++|+++|+|+.+||.+|+.+.+.++.+++|.+.++ +|++.++|++. .+...+++.|++..+|++
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~ 538 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTI 538 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEE
Confidence 357899999999999999999999999999999999999999999886 68999999875 356789999999999999
Q ss_pred EEEeCCCCceE--EEEeCCCChHHHHHHHHhh
Q 019378 142 LVVDPITGQKM--RSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 142 ~ii~p~tG~~l--~~~~G~~~~~~~l~~L~~~ 171 (342)
+++++ +|+.+ .++.|..++++|++.|.+.
T Consensus 539 ~~~~~-~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 539 LFFDA-QGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEECC-CCCCcccccccCCCCHHHHHHHHHHh
Confidence 99997 68764 6889999999998877654
No 28
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.03 E-value=3.7e-09 Score=89.84 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=79.7
Q ss_pred HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCce
Q 019378 72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 151 (342)
Q Consensus 72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~ 151 (342)
+.|...+|++||+|+++||..|..|...+- .+.+-....+-++.++++......++..|++..+|+++|+++ +|++
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~-~G~~ 89 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR-EGNE 89 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC-CCCE
Confidence 455578999999999999999999864321 233333445556666777666667899999999999999986 7999
Q ss_pred EEEEeCCCChHHHHHHHHhhhhcC
Q 019378 152 MRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 152 l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+.++.|..+.++|...|...+...
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC
Confidence 999999999999988888888755
No 29
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.78 E-value=1e-07 Score=74.74 Aligned_cols=94 Identities=17% Similarity=0.278 Sum_probs=73.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 145 (342)
+|++.+.. ..++++||+|+++||..|+.+...+ ..+.+.+...+.+..+|.+. ...+++.|++.++|+++|++
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEe
Confidence 35555443 3589999999999999999996542 34555555678888887765 45688999999999999997
Q ss_pred CCCCceEEEEeCCCChHHHHHHH
Q 019378 146 PITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 146 p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
.|+.+.++.|..+.+++...|
T Consensus 75 --~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 75 --AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred --CCEEeeeecCCCCHHHHHHHh
Confidence 688888999998888876654
No 30
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=8.5e-08 Score=81.18 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=86.5
Q ss_pred CcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH---hccEEEEEeecCChhHHHHHHhCCC
Q 019378 59 FHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKL 135 (342)
Q Consensus 59 ~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~~~FV~w~~~~~s~eg~~~~~~y~v 135 (342)
+.++-.-+..+=...-.+...|+||.||.+||.+|+.|. |-+-++. .+.|-++.+|.++ ...++..|.|
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~------P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I 113 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLG------PILEELVSEYAGKFKLYKVDTDE--HPELAEDYEI 113 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhh------HHHHHHHHhhcCeEEEEEEcccc--ccchHhhcce
Confidence 445556677777888889999999999999999999995 3344444 4579999877654 5678999999
Q ss_pred CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
..+|+++++. +|+.+.++.|..+.+.+...|..++.
T Consensus 114 ~avPtvlvfk--nGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 114 SAVPTVLVFK--NGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeeEEEEEE--CCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999998 69999999999999999888887764
No 31
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.73 E-value=1.4e-07 Score=74.67 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=71.3
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 150 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~ 150 (342)
.+.+++++++|+|+++||..|..+...+ ..+.+.+. ..+++..+|.+..+...++..|++.++|++.++. +|+
T Consensus 12 ~~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~--~g~ 86 (104)
T cd02997 12 KFLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE--NGK 86 (104)
T ss_pred HHHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe--CCC
Confidence 3345678999999999999999996553 24444454 5688888888876677889999999999987775 588
Q ss_pred eEEEEeCCCChHHHHHH
Q 019378 151 KMRSWCGMVQPESLLED 167 (342)
Q Consensus 151 ~l~~~~G~~~~~~~l~~ 167 (342)
.+.++.|..+++.+++.
T Consensus 87 ~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 87 FVEKYEGERTAEDIIEF 103 (104)
T ss_pred eeEEeCCCCCHHHHHhh
Confidence 88899999998888653
No 32
>PRK10996 thioredoxin 2; Provisional
Probab=98.71 E-value=2.9e-07 Score=77.90 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=74.9
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 150 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~ 150 (342)
...+.+++|+++|+|+.+||..|+.|.. +| .++.+-...++.+..+|.+.. ..++..|++.++|+++|+. +|+
T Consensus 45 ~~~~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~V~~~Ptlii~~--~G~ 117 (139)
T PRK10996 45 LDKLLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAE--RELSARFRIRSIPTIMIFK--NGQ 117 (139)
T ss_pred HHHHHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCC--HHHHHhcCCCccCEEEEEE--CCE
Confidence 3344567999999999999999999964 34 335555666888888887653 4688999999999998886 699
Q ss_pred eEEEEeCCCChHHHHHHHHhh
Q 019378 151 KMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 151 ~l~~~~G~~~~~~~l~~L~~~ 171 (342)
++.++.|..+.+.|.+.|.+.
T Consensus 118 ~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 118 VVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEEcCCCCHHHHHHHHHHh
Confidence 999999999988888777654
No 33
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.70 E-value=2.4e-07 Score=74.07 Aligned_cols=93 Identities=17% Similarity=0.342 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCCh-hHHHHHHhCCCCCCcEEE
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTS-EGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~-eg~~~~~~y~v~~~P~l~ 142 (342)
.|++++..+ .+|++||+|+++||.+|+.+. +.+.++.+ .++.+..+|.+.. +...+++.|+|..+|+++
T Consensus 5 ~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 76 (103)
T cd02985 5 ELDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFL 76 (103)
T ss_pred HHHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEE
Confidence 456666443 499999999999999999985 34444333 3678888888764 345799999999999988
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~ 169 (342)
|+. +|+++.++.| ..+.++...+.
T Consensus 77 ~~~--~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 77 FYK--DGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred EEe--CCeEEEEEeC-CCHHHHHHHHH
Confidence 884 7999999999 55677765543
No 34
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.70 E-value=3.2e-07 Score=72.34 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 145 (342)
+|.=....+ +.+|+++|+++++||..|..+...+ +++.+-++.++.+..+|++.. ..++..|++.++|+++|+.
T Consensus 2 ~~~~~~~~~-~~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~~ 75 (97)
T cd02949 2 SYALRKLYH-ESDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDED--QEIAEAAGIMGTPTVQFFK 75 (97)
T ss_pred chhHHHHHH-hCCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCC--HHHHHHCCCeeccEEEEEE
Confidence 343333334 4889999999999999999996543 456666667788888888653 3578899999999999996
Q ss_pred CCCCceEEEEeCCCChHHHHHHH
Q 019378 146 PITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 146 p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
.|+++.++.|..+.++|.+.|
T Consensus 76 --~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 76 --DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred --CCeEEEEEeCCccHHHHHHhh
Confidence 589999999999888877654
No 35
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.62 E-value=5.7e-07 Score=70.65 Aligned_cols=97 Identities=24% Similarity=0.367 Sum_probs=76.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|++.+.. .+++++|+|+++||..|+.+...+ .++.+....++.++.+|.+ +...+++.|++..+|++++
T Consensus 6 ~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 6 DENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp TTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEE
T ss_pred HHHHHHHHHc---cCCCEEEEEeCCCCCcccccccee---cccccccccccccchhhhh--ccchhhhccCCCCCCEEEE
Confidence 3456666554 579999999999999999995321 2233334448888888886 4577999999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
+. .|+.+.++.|..+++.+.+.|.+
T Consensus 78 ~~--~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 78 FK--NGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EE--TTEEEEEEESSSSHHHHHHHHHH
T ss_pred EE--CCcEEEEEECCCCHHHHHHHHHc
Confidence 98 58888899999999999877653
No 36
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.62 E-value=7.6e-07 Score=71.02 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=66.0
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
+.+.+++++|+|+++||.+|+.+... + ..+.+-... ...+..++.+. ..+++.|++..+|+++++. +|+.+
T Consensus 13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~-l--~~~~~~~~~~~~~~~~vd~d~---~~~~~~~~v~~~Pt~~~~~--~g~~~ 84 (102)
T cd02948 13 LLSNKGLTVVDVYQEWCGPCKAVVSL-F--KKIKNELGDDLLHFATAEADT---IDTLKRYRGKCEPTFLFYK--NGELV 84 (102)
T ss_pred HHccCCeEEEEEECCcCHhHHHHhHH-H--HHHHHHcCCCcEEEEEEeCCC---HHHHHHcCCCcCcEEEEEE--CCEEE
Confidence 44579999999999999999999643 2 334343443 35567777773 3578999999999998886 79999
Q ss_pred EEEeCCCChHHHHHHHH
Q 019378 153 RSWCGMVQPESLLEDLV 169 (342)
Q Consensus 153 ~~~~G~~~~~~~l~~L~ 169 (342)
.++.|. +++.+.+.|.
T Consensus 85 ~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 85 AVIRGA-NAPLLNKTIT 100 (102)
T ss_pred EEEecC-ChHHHHHHHh
Confidence 999994 7888776664
No 37
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.57 E-value=5.4e-07 Score=72.73 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHH-hCCCCCCcEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCT-YYKLDSIPVVL 142 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~-~y~v~~~P~l~ 142 (342)
.+|+ ++..+++.+|++||+|+++||..|+.|... | .++.+.+.. ++.+..++.+.. ...++. .|++..+|++.
T Consensus 9 ~~~~-~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 9 AEIE-ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGE-QREFAKEELQLKSFPTIL 83 (109)
T ss_pred HHHH-HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCCcCCEEE
Confidence 3444 666678889999999999999999999754 4 346666665 599999888763 234564 69999999999
Q ss_pred EEeCCCCceEEEEeCC-CChHHHHH
Q 019378 143 VVDPITGQKMRSWCGM-VQPESLLE 166 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~-~~~~~~l~ 166 (342)
++.+ ++..+..+.|. .+.+.|+.
T Consensus 84 ~f~~-~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 84 FFPK-NSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred EEcC-CCCCceeccCCCCCHHHHHh
Confidence 9986 34456678884 67777754
No 38
>PHA02278 thioredoxin-like protein
Probab=98.57 E-value=1e-06 Score=70.83 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=63.9
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChh--HHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSE--GKKVCTYYKLDSIPVVLVVDPITGQ 150 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~e--g~~~~~~y~v~~~P~l~ii~p~tG~ 150 (342)
+++++++|+|+.+||.+|+.|.. .+.++-.+ ..-++.+|++..+ ...+++.|+|.++|+++++. +|+
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p------~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk--~G~ 83 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKS------VIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK--DGQ 83 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHH------HHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE--CCE
Confidence 58999999999999999999953 33333322 2335666776432 35589999999999999997 699
Q ss_pred eEEEEeCCCChHHHHH
Q 019378 151 KMRSWCGMVQPESLLE 166 (342)
Q Consensus 151 ~l~~~~G~~~~~~~l~ 166 (342)
.+.++.|..+++.+.+
T Consensus 84 ~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 84 LVKKYEDQVTPMQLQE 99 (103)
T ss_pred EEEEEeCCCCHHHHHh
Confidence 9999999888877643
No 39
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.56 E-value=6.9e-07 Score=69.89 Aligned_cols=93 Identities=13% Similarity=0.317 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 145 (342)
+|++++..+. +|+++|+|+.+||..|+.|... | +++..-+..++.++.+|.+. ...++..|++.++|+++++.
T Consensus 4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~-l--~~l~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQV-F--EELAKEAFPSVLFLSIEAEE--LPEISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHH-H--HHHHHHhCCceEEEEEcccc--CHHHHHhcCCccccEEEEEE
Confidence 5666666664 7999999999999999999653 3 23333334578888877653 45678999999999999996
Q ss_pred CCCCceEEEEeCCCChHHHHHHH
Q 019378 146 PITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 146 p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
.|+.+.++.|. .++.+.+.|
T Consensus 77 --~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 77 --NGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred --CCEEEEEEeCC-CHHHHHHhh
Confidence 68999999984 566665543
No 40
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.53 E-value=1.3e-06 Score=70.85 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=72.2
Q ss_pred ccHHHHHHHH--HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 65 GSFEKAKDAA--SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 65 gs~~eA~~~A--k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
-+.++-...+ +..++++||+|+++||..|+.+... |. ++.+-+.. ++.+..+|.+.. ..++..|++.++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~~~Pt~ 83 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPV-WK--EVIQELEPLGVGIATVNAGHE--RRLARKLGAHSVPAI 83 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHH-HH--HHHHHHHhcCceEEEEecccc--HHHHHHcCCccCCEE
Confidence 3444444444 3478999999999999999998653 22 44444443 577788777653 457899999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~ 169 (342)
+++. .|+.+....|..+.+.+...|.
T Consensus 84 ~i~~--~g~~~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 84 VGII--NGQVTFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred EEEE--CCEEEEEecCCCCHHHHHHHHh
Confidence 9996 6888888999888887765544
No 41
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.52 E-value=4.3e-07 Score=91.75 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=82.5
Q ss_pred HHHHHHHcCC--eEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhHHHHHHhCCCCCCcEEEEEe
Q 019378 70 AKDAASVQDK--WLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 70 A~~~Ak~~~K--~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg~~~~~~y~v~~~P~l~ii~ 145 (342)
.++.+..++| |+||+++.+||.+|+.+.+.+++++.|..-+ .++|+.+.|++. ++-..+.+.|++-+.|++++.+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 4555555555 9999999999999999999999988887655 589999999954 5556788999999999999999
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 146 PITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 146 p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
+.+.+.. .+.|.++.+.|++.|..+
T Consensus 543 ~~g~e~~-~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQGSEPE-ILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCcCc-CCcceecHHHHHHHHHHh
Confidence 8544443 399999999999988765
No 42
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.50 E-value=8.9e-07 Score=70.80 Aligned_cols=99 Identities=15% Similarity=0.227 Sum_probs=73.8
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|++.+. +.++++||+|+++||..|+.+... |. ++.+-++..+.+..++.+..+...++..|++.++|++.|
T Consensus 7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~-~~--~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPE-YA--KAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChH-HH--HHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 456666664 568999999999999999998643 21 344445556777778888766778999999999999999
Q ss_pred EeCCC---CceEEEEeCCCChHHHHHHH
Q 019378 144 VDPIT---GQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 144 i~p~t---G~~l~~~~G~~~~~~~l~~L 168 (342)
+.+.. +.....+.|..+.+.++..|
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHHHh
Confidence 98632 12456678888888876543
No 43
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.50 E-value=2.8e-06 Score=66.27 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=69.9
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~ 155 (342)
..+++++|+|+++||..|..+... | ..+.+-++.++.++.+|.+.. ..+++.|++..+|+++++. .|+.+...
T Consensus 12 ~~~~~vvi~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~--~g~~~~~~ 84 (101)
T TIGR01068 12 SSDKPVLVDFWAPWCGPCKMIAPI-L--EELAKEYEGKVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFK--NGKEVDRS 84 (101)
T ss_pred hcCCcEEEEEECCCCHHHHHhCHH-H--HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCcCCEEEEEe--CCcEeeee
Confidence 457899999999999999999643 2 344444566788888887654 3578899999999999995 68888888
Q ss_pred eCCCChHHHHHHHHhh
Q 019378 156 CGMVQPESLLEDLVPF 171 (342)
Q Consensus 156 ~G~~~~~~~l~~L~~~ 171 (342)
.|..+.+.+...|...
T Consensus 85 ~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 85 VGALPKAALKQLINKN 100 (101)
T ss_pred cCCCCHHHHHHHHHhh
Confidence 8988888887766543
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.45 E-value=1.9e-06 Score=66.80 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=70.4
Q ss_pred HHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH--hccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCC
Q 019378 70 AKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 147 (342)
Q Consensus 70 A~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i--~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~ 147 (342)
.+..+..++++++|+|++++|..|..+... | ..+.+.+ +.++.+..++.+. ...++..|++..+|+++++++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~- 80 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPE-Y--EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPN- 80 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHH-H--HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcC-
Confidence 455566677799999999999999999653 3 2445556 4678888877665 567899999999999999986
Q ss_pred CCceEEEEeCCCChHHHHH
Q 019378 148 TGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 148 tG~~l~~~~G~~~~~~~l~ 166 (342)
+|..+.+..|..+++++++
T Consensus 81 ~~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred CCcccccCCCCcCHHHHHh
Confidence 3466777888888888765
No 45
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.43 E-value=3.3e-06 Score=66.22 Aligned_cols=95 Identities=13% Similarity=0.204 Sum_probs=70.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
.+|++++ .++++++|+|+++||..|+.|. ..| +.+.+.+.. ++.+..+|. .+...++..|++..+|+++
T Consensus 4 ~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~-~~~--~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 4 SNFDDIV----LSNKDVLVEFYAPWCGHCKNLA-PEY--EKLAKELKGDPDIVLAKVDA--TAEKDLASRFGVSGFPTIK 74 (102)
T ss_pred hhHHHHh----ccCCcEEEEEECCCCHHHHhhC-hHH--HHHHHHhccCCceEEEEEEc--cchHHHHHhCCCCcCCEEE
Confidence 3455555 3799999999999999999984 344 345555555 566666555 4456788999999999999
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
++++ ++. +..+.|..+.+.|...|.+
T Consensus 75 ~~~~-~~~-~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 75 FFPK-GKK-PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred EecC-CCc-ceeecCCCCHHHHHHHHHh
Confidence 9996 334 6788898888887766554
No 46
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.43 E-value=1.2e-06 Score=76.63 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=73.0
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh--HH-------------------HHHHh
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--GK-------------------KVCTY 132 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e--g~-------------------~~~~~ 132 (342)
+...+|+++|+|+++||..|+.+. +.+.++.+.++.++.++.++.. .. .++..
T Consensus 59 ~~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~ 132 (173)
T TIGR00385 59 AFIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLD 132 (173)
T ss_pred HhcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHh
Confidence 344689999999999999999874 4456666667878877764321 11 23456
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
|++..+|+.++||+ +|+++.++.|..+.+++.+.|..++.
T Consensus 133 ~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 133 LGVYGAPETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred cCCeeCCeEEEEcC-CceEEEEEeccCCHHHHHHHHHHHhh
Confidence 78888999999997 69999999999999999998888774
No 47
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.41 E-value=2.7e-06 Score=67.58 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+|++.+. ..+++++|+|+++||..|+.|.. +| .++.+-+...+.+..+|.+. ...+++.|++.++|+++++
T Consensus 9 ~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 9 EDFPELVL---NRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLY 80 (104)
T ss_pred HHHHHHHh---cCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEE
Confidence 45665544 45779999999999999999953 22 22333334457777877765 4568899999999999999
Q ss_pred eCCCCceEEEEeCCCC-hHHHHH
Q 019378 145 DPITGQKMRSWCGMVQ-PESLLE 166 (342)
Q Consensus 145 ~p~tG~~l~~~~G~~~-~~~~l~ 166 (342)
.. +|+.+..+.|..+ .++|..
T Consensus 81 ~~-g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 81 PG-NASKYHSYNGWHRDADSILE 102 (104)
T ss_pred cC-CCCCceEccCCCCCHHHHHh
Confidence 75 3478888999876 887754
No 48
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.41 E-value=6.4e-06 Score=67.31 Aligned_cols=85 Identities=12% Similarity=0.172 Sum_probs=65.4
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 153 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~ 153 (342)
.+++++|+|+.+||.+|+.|. |.+.++..+ ...|+.+|++. ...++..|+|.++|+++++. +|+.+.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~------P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk--~G~~v~ 82 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMD------EVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFF--RNKHMK 82 (114)
T ss_pred CCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEE--CCEEEE
Confidence 689999999999999999995 344444433 35678888875 45789999999999999997 699988
Q ss_pred EEeCCC----------ChHHHHHHHHhh
Q 019378 154 SWCGMV----------QPESLLEDLVPF 171 (342)
Q Consensus 154 ~~~G~~----------~~~~~l~~L~~~ 171 (342)
+..|.. +.++||+.+..+
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 83 IDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 887743 456677655443
No 49
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.41 E-value=3.6e-06 Score=71.40 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=74.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
..|++|+..+ .+|+++|.|+.+||.+|..+.. +| +++.+-+.+...++.+|++. ...+++.|++.+.|+++++
T Consensus 12 ~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p-~l--~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 12 WAVDQAILAE--EERLVVIRFGHDWDETCMQMDE-VL--ASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HHHHHHHHhc--CCCEEEEEEECCCChhHHHHHH-HH--HHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcEEEE
Confidence 4566666643 7899999999999999999952 11 22333333346668888885 4579999999977766644
Q ss_pred eCCCCc-eEEEEeC--------CCChHHHHHHHHhhhhc
Q 019378 145 DPITGQ-KMRSWCG--------MVQPESLLEDLVPFMDG 174 (342)
Q Consensus 145 ~p~tG~-~l~~~~G--------~~~~~~~l~~L~~~l~~ 174 (342)
-. +|+ .+.+..| ..+.++|++.+..++..
T Consensus 85 fk-~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 85 FR-NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred EE-CCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 42 687 7788888 57889999988887753
No 50
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.2e-06 Score=67.56 Aligned_cols=92 Identities=15% Similarity=0.241 Sum_probs=75.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
..+++.....+...+|+++|+|+++||.+|..+. |.+.++-.+ +-+|+.+|++. ...+++.|++...|++
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~------P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf 78 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIA------PKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTF 78 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhh------hHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEE
Confidence 3467777777777789999999999999999984 566666654 58999999988 8889999999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHH
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
.++. .|+.+..+.|. ++..+.+
T Consensus 79 ~f~k--~g~~~~~~vGa-~~~~l~~ 100 (106)
T KOG0907|consen 79 VFYK--GGEEVDEVVGA-NKAELEK 100 (106)
T ss_pred EEEE--CCEEEEEEecC-CHHHHHH
Confidence 9995 69999999884 3444433
No 51
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.38 E-value=3.9e-06 Score=68.55 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=73.6
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHH-HhCCCCCCcEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC-TYYKLDSIPVV 141 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~-~~y~v~~~P~l 141 (342)
-..+|+++... .++++++||.|+.+||..|+.|... | +++.+.+++...+.++|.+... .++ ..|++.+||++
T Consensus 15 ~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~-~--~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PTl 88 (113)
T cd03006 15 YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQE-F--EQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPVI 88 (113)
T ss_pred chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCEE
Confidence 35677776554 6888999999999999999998542 1 2455555667788888887544 466 58999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHH
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
.+.. +|+......|..+++.++.
T Consensus 89 ~lf~--~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 89 HLYY--RSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEE--CCccceEEeCCCCHHHHHh
Confidence 9984 5777778889999888864
No 52
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.36 E-value=5e-06 Score=62.98 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=66.6
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH--hccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 150 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i--~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~ 150 (342)
.+..+++++||+|++++|..|+.+.+ .+.++. ..++.+..++.+. ...++..|++..+|+++++. .|+
T Consensus 5 ~~~~~~~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~--~g~ 74 (93)
T cd02947 5 ELIKSAKPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFK--NGK 74 (93)
T ss_pred HHHhcCCcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEE--CCE
Confidence 34444499999999999999999864 333333 3678888877765 45678899999999999996 578
Q ss_pred eEEEEeCCCChHHHHHHH
Q 019378 151 KMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 151 ~l~~~~G~~~~~~~l~~L 168 (342)
.+..+.|..+.+.|...|
T Consensus 75 ~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 75 EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEecCCCHHHHHHHh
Confidence 889999988887776544
No 53
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.7e-06 Score=88.81 Aligned_cols=92 Identities=14% Similarity=0.239 Sum_probs=76.0
Q ss_pred cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhH----HHHHHhCC
Q 019378 60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEG----KKVCTYYK 134 (342)
Q Consensus 60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg----~~~~~~y~ 134 (342)
|+=+..-=++|...|++++|||||.|--++|.-||+|.++.+.|++|..+||++||..+||-.. |+- .++++...
T Consensus 25 PV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~t 104 (667)
T COG1331 25 PVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAIT 104 (667)
T ss_pred CccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhc
Confidence 3335566689999999999999999999999999999999999999999999999999987643 221 23444443
Q ss_pred -CCCCcEEEEEeCCCCceE
Q 019378 135 -LDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 135 -v~~~P~l~ii~p~tG~~l 152 (342)
-.++|.-+|+.| .|+..
T Consensus 105 G~GGWPLtVfLTP-d~kPF 122 (667)
T COG1331 105 GQGGWPLTVFLTP-DGKPF 122 (667)
T ss_pred cCCCCceeEEECC-CCcee
Confidence 367999999999 67765
No 54
>PRK09381 trxA thioredoxin; Provisional
Probab=98.35 E-value=7e-06 Score=65.82 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 145 (342)
+|.+.+. ..+++++|+|+++||..|..+...+ . ++.+-...++.+..+|.+.. ..++..|++.++|+++|+.
T Consensus 12 ~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~-~--~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~ 83 (109)
T PRK09381 12 SFDTDVL---KADGAILVDFWAEWCGPCKMIAPIL-D--EIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLLFK 83 (109)
T ss_pred hHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHH-H--HHHHHhCCCcEEEEEECCCC--hhHHHhCCCCcCCEEEEEe
Confidence 4554442 4588999999999999999985321 1 23333445677777777654 3467899999999999995
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 146 PITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 146 p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
.|+.+.+..|..+.+++...|...
T Consensus 84 --~G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 84 --NGEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred --CCeEEEEecCCCCHHHHHHHHHHh
Confidence 689898999998888776665544
No 55
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.34 E-value=5.2e-06 Score=66.19 Aligned_cols=96 Identities=8% Similarity=0.147 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
+++++...++ +++++||+|+.+||..|+.+.. +|. ++.+-++. ++.+..++.+. ...+++.|++.++|+++
T Consensus 4 ~~~~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 4 DLDDSFKDVR-KEDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTIK 77 (104)
T ss_pred echhhhhhhc-cCCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEEE
Confidence 5677777764 4679999999999999999975 343 34444432 47777777654 34678899999999999
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
++. +| .+....|..+.+.+...+..
T Consensus 78 l~~--~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 78 LLK--GD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred EEc--CC-CceeecCCCCHHHHHHHHHh
Confidence 995 34 45668898888887665554
No 56
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.32 E-value=3.3e-06 Score=67.30 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=62.6
Q ss_pred HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378 75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 154 (342)
Q Consensus 75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~ 154 (342)
...+|++||+|+.+||..|+.+... |. ++.+... .+.+..+|.+. ....++..|++.++|++.+++. | .+.+
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~-l~--~la~~~~-~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~--g-~~~~ 86 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPH-FN--ALSSMFP-QIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNS--T-PRVR 86 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHH-HH--HHHHHhc-cCceEEEECCC-CCHHHHHhcCCeecCEEEEEcC--C-ceeE
Confidence 4789999999999999999998532 21 2223232 46666776652 2346889999999999999984 5 6788
Q ss_pred EeCCCChHHHHH
Q 019378 155 WCGMVQPESLLE 166 (342)
Q Consensus 155 ~~G~~~~~~~l~ 166 (342)
+.|..+.+.+.+
T Consensus 87 ~~G~~~~~~l~~ 98 (100)
T cd02999 87 YNGTRTLDSLAA 98 (100)
T ss_pred ecCCCCHHHHHh
Confidence 999988887764
No 57
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.31 E-value=7.7e-06 Score=65.61 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=66.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh------ccEEEEEeecCChhHHHHHHhCCCCC
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS------TNFIFWQVYDDTSEGKKVCTYYKLDS 137 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~------~~FV~w~~~~~s~eg~~~~~~y~v~~ 137 (342)
..+|++++ +.++++||+|+++||..|+.|... |. ++.+.++ .++.+..+|.+.. ..+++.|++.+
T Consensus 8 ~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~-~~--~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~ 78 (108)
T cd02996 8 SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPI-FE--EAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINK 78 (108)
T ss_pred HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHH-HH--HHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCc
Confidence 34566544 567899999999999999999643 32 2222222 1477778887764 46899999999
Q ss_pred CcEEEEEeCCCCce-EEEEeCCCChHHHHH
Q 019378 138 IPVVLVVDPITGQK-MRSWCGMVQPESLLE 166 (342)
Q Consensus 138 ~P~l~ii~p~tG~~-l~~~~G~~~~~~~l~ 166 (342)
||++.++. .|+. .....|..+.+.+.+
T Consensus 79 ~Ptl~~~~--~g~~~~~~~~g~~~~~~l~~ 106 (108)
T cd02996 79 YPTLKLFR--NGMMMKREYRGQRSVEALAE 106 (108)
T ss_pred CCEEEEEe--CCcCcceecCCCCCHHHHHh
Confidence 99999985 5774 466788888887765
No 58
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.28 E-value=8.7e-06 Score=64.41 Aligned_cols=91 Identities=22% Similarity=0.336 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+|++.+ .+++++||+|+++||..|+.|.. +|. ++.+-+..++.+..+|.+.. ..+++.|++..||++.++
T Consensus 9 ~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 9 GDFDAAV----NSGEIWFVNFYSPRCSHCHDLAP-TWR--EFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred hhHHHHh----cCCCeEEEEEECCCChHHHHhHH-HHH--HHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCEEEEE
Confidence 3565544 45699999999999999999863 222 34445566788888888753 568899999999999988
Q ss_pred eCCCCceEEEEeCCCChHHHHH
Q 019378 145 DPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 145 ~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
. +|+.+..+.|..+.+.|..
T Consensus 80 ~--~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 80 P--SGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred c--CCCCcccCCCCCCHHHHHh
Confidence 4 6888888899888887653
No 59
>PTZ00051 thioredoxin; Provisional
Probab=98.25 E-value=1.6e-05 Score=62.29 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeC
Q 019378 69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 146 (342)
Q Consensus 69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p 146 (342)
+.+..+.+.+++++|+|+++||..|+.+.. .+.++.++ ++.+..+|.+ +...++..|++.++|+++++.
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~- 79 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAP------FYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFK- 79 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhH------HHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEe-
Confidence 345556678999999999999999999953 23333332 4667776665 356789999999999988774
Q ss_pred CCCceEEEEeCCCChHHH
Q 019378 147 ITGQKMRSWCGMVQPESL 164 (342)
Q Consensus 147 ~tG~~l~~~~G~~~~~~~ 164 (342)
.|+++.++.|. .++++
T Consensus 80 -~g~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 80 -NGSVVDTLLGA-NDEAL 95 (98)
T ss_pred -CCeEEEEEeCC-CHHHh
Confidence 78999999995 44443
No 60
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.22 E-value=4e-06 Score=68.47 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=65.2
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhccc----------------CCHHHHHHHhccEEEEEeecCChhHHHHHHhCC
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTW----------------ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYK 134 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl----------------~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~ 134 (342)
+..+...+|+++|+|+++||..|+.+...+- ..+.+..+++++-+-|....+ ....+++.|+
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~ 90 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND--PDGVISARWG 90 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC--CCcHHHHhCC
Confidence 4444556799999999999999999843221 123444455443333332222 1245788999
Q ss_pred CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHH
Q 019378 135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLED 167 (342)
Q Consensus 135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~ 167 (342)
+.++|+++||++ +| ++.++.|..+++.+.+.
T Consensus 91 i~~~P~~~vid~-~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 91 VSVTPAIVIVDP-GG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCcccEEEEEcC-CC-eEEEEeccCCHHHHHhh
Confidence 999999999997 56 88899999999988764
No 61
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.21 E-value=1.6e-05 Score=70.41 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=70.2
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh-h-HHH-------------------HHHhCC
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-E-GKK-------------------VCTYYK 134 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~-e-g~~-------------------~~~~y~ 134 (342)
..+|+++|+|+.+||.+|...-. .+.++-+.++.++.++.++. + ..+ ++..|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p------~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQ------YLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 36999999999999999998743 44555555677777775432 2 222 234678
Q ss_pred CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+..+|+.+|||+ +|+++.+..|.++.+++-..|...+..
T Consensus 140 v~~~P~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 140 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred CCcCCeEEEECC-CceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 899999999998 699999999999998887777777753
No 62
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.18 E-value=2.7e-05 Score=63.42 Aligned_cols=96 Identities=16% Similarity=0.290 Sum_probs=72.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--cc-EEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TN-FIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~-FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
..|++++..| ++|+++|.|..+||.+|..++ |-+.++-+ .+ .+++.+|++ +...+++.|.+...|+.
T Consensus 3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~md------p~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~amPtf 72 (114)
T cd02986 3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQLD------DILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHhc--CCCEEEEEEeCCCChhHHHHH------HHHHHHHHHccCceEEEEEecc--ccHHHHHhcCceeCcEE
Confidence 4678888888 899999999999999999985 44444444 25 889998887 56679999999999999
Q ss_pred EEEeCCCCceEE---------EEeCCC-ChHHHHHHHHhhh
Q 019378 142 LVVDPITGQKMR---------SWCGMV-QPESLLEDLVPFM 172 (342)
Q Consensus 142 ~ii~p~tG~~l~---------~~~G~~-~~~~~l~~L~~~l 172 (342)
+++- +|+-+. .|.|.+ +.++||+.+..+.
T Consensus 73 vffk--ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 73 IFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEEE--CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 9886 455332 233333 5688888776543
No 63
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.15 E-value=1.4e-05 Score=64.88 Aligned_cols=82 Identities=15% Similarity=0.289 Sum_probs=60.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
..|.+.+..+. .+++++|+|+++||..|+.|.. .+.++..+ +..|..+|++.. .+++.|++.++|+++
T Consensus 12 ~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~~------~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 12 KEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILDS------HLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLPTLL 81 (113)
T ss_pred HHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHHH------HHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCCEEE
Confidence 34555553221 2589999999999999999853 33344332 456677777643 889999999999999
Q ss_pred EEeCCCCceEEEEeCC
Q 019378 143 VVDPITGQKMRSWCGM 158 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~ 158 (342)
++. .|+.+.++.|.
T Consensus 82 ~f~--~G~~v~~~~G~ 95 (113)
T cd02957 82 VYK--NGELIDNIVGF 95 (113)
T ss_pred EEE--CCEEEEEEecH
Confidence 987 69999999883
No 64
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.14 E-value=3.2e-05 Score=60.74 Aligned_cols=90 Identities=16% Similarity=0.305 Sum_probs=65.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
.+|++++ ..+ ++||+|+++||..|+.+... |. ++.+.... ++.+..+|.+... .+++.|++.++|++
T Consensus 8 ~~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~-~~--~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~ 77 (102)
T cd03005 8 DNFDHHI----AEG-NHFVKFFAPWCGHCKRLAPT-WE--QLAKKFNNENPSVKIAKVDCTQHR--ELCSEFQVRGYPTL 77 (102)
T ss_pred HHHHHHh----hcC-CEEEEEECCCCHHHHHhCHH-HH--HHHHHHhccCCcEEEEEEECCCCh--hhHhhcCCCcCCEE
Confidence 3455555 334 59999999999999998542 22 23333333 6888888876533 67889999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHH
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
+++. .|..+.+..|..+.+.+..
T Consensus 78 ~~~~--~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 78 LLFK--DGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred EEEe--CCCeeeEeeCCCCHHHHHh
Confidence 9995 5777788999888777644
No 65
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.13 E-value=2.1e-05 Score=67.70 Aligned_cols=118 Identities=14% Similarity=0.192 Sum_probs=77.1
Q ss_pred hHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChh
Q 019378 47 SRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE 125 (342)
Q Consensus 47 ~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~e 125 (342)
.-+.+..+..||- .....+-+++.-......++.+|+|..+||.+|+... |.+.++-++ ++.+..++++...
T Consensus 20 ~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~l~~~~lvnFWAsWCppCr~e~------P~L~~l~~~~~~~Vi~Vs~d~~~ 92 (153)
T TIGR02738 20 TLDEITNLWAPPQ-GLTAATDNAPQGRHANQDDYALVFFYQSTCPYCHQFA------PVLKRFSQQFGLPVYAFSLDGQG 92 (153)
T ss_pred cHHHHhhcccccc-cccccccccCcchhhhcCCCEEEEEECCCChhHHHHH------HHHHHHHHHcCCcEEEEEeCCCc
Confidence 3556777776653 2233333334444455667789999999999999973 555555544 3555555555321
Q ss_pred -----------HHHHHHhC---CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 126 -----------GKKVCTYY---KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 126 -----------g~~~~~~y---~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
+......| ++..+|+.+|||+.+|.+..+..|.++.+++...|...
T Consensus 93 ~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 93 LTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred ccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 22223455 78999999999985444566789999999887766654
No 66
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.13 E-value=3.1e-05 Score=61.10 Aligned_cols=92 Identities=11% Similarity=0.252 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
..+|++++ +++| ||+|+++||..|+.+... |. ++.+.... ++.+..+|.+.. ..++..|++.++|+++
T Consensus 8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPE-WE--EFADWSDDLGINVAKVDVTQE--PGLSGRFFVTALPTIY 76 (101)
T ss_pred hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHH-HH--HHHHhhccCCeEEEEEEccCC--HhHHHHcCCcccCEEE
Confidence 45676654 3455 699999999999998643 22 23333332 578888887653 3578999999999999
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~ 169 (342)
++. .|+ +....|..+.+.+.+.|.
T Consensus 77 ~~~--~g~-~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 77 HAK--DGV-FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred EeC--CCC-EEEecCCCCHHHHHHHHh
Confidence 873 577 467889888888876553
No 67
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.12 E-value=3.9e-05 Score=72.13 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=77.9
Q ss_pred CCcCcccccHHHHHH------HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChh-----
Q 019378 58 PFHLMFNGSFEKAKD------AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE----- 125 (342)
Q Consensus 58 p~~~~f~gs~~eA~~------~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~e----- 125 (342)
|++-+-...+.++.. .+.-.+|+.||+|+.+||..|+.+. +.+..+-++ ++.+..++++...
T Consensus 140 P~~~~a~~~~~~~~~~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~------P~L~~la~~yg~~Vi~VsvD~~~~~~fp 213 (271)
T TIGR02740 140 PVSTLALDAHDTTAKKQKDRVMKDLAKKSGLFFFFKSDCPYCHQQA------PILQAFEDRYGIEVLPVSVDGGPLPGFP 213 (271)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCccHHHHh------HHHHHHHHHcCcEEEEEeCCCCccccCC
Confidence 444444444544433 2344589999999999999999974 555666554 4666666665421
Q ss_pred ----HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 126 ----GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 126 ----g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
...+++.|+|..+|+++|+++.+|.+.....|.++.++|.+.+.....
T Consensus 214 ~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 214 NARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred cccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 134688999999999999998656655566799999999888876654
No 68
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.12 E-value=2.1e-05 Score=61.90 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
+|++.+. ..++++||+|+++||..|+.|...+ ..+.+.+++ ++.+..+|.+.. .++..+++.++|++.+
T Consensus 9 ~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 9 NFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTILF 79 (104)
T ss_pred hhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEEE
Confidence 4444443 4568999999999999999996543 555566654 688988888754 4677888999999999
Q ss_pred EeCCCCc--eEEEEeCCCChHHHHH
Q 019378 144 VDPITGQ--KMRSWCGMVQPESLLE 166 (342)
Q Consensus 144 i~p~tG~--~l~~~~G~~~~~~~l~ 166 (342)
+.+ |. ......|..+...|+.
T Consensus 80 ~~~--~~~~~~~~~~g~~~~~~l~~ 102 (104)
T cd02995 80 FPA--GDKSNPIKYEGDRTLEDLIK 102 (104)
T ss_pred EcC--CCcCCceEccCCcCHHHHHh
Confidence 974 44 4566788888887765
No 69
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.12 E-value=5e-05 Score=62.81 Aligned_cols=93 Identities=8% Similarity=0.126 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh---------hHHHHHHhCCC
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------EGKKVCTYYKL 135 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~---------eg~~~~~~y~v 135 (342)
+.++ +...-+.++..+|||+.+||++|+.|. |.+.++.++ +.-++.+|++.. +-..+...|++
T Consensus 12 t~~~-~~~~i~~~~~~iv~f~~~~Cp~C~~~~------P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 12 TVVR-ALEALDKKETATFFIGRKTCPYCRKFS------GTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred CHHH-HHHHHHcCCcEEEEEECCCChhHHHHh------HHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 3444 333446789999999999999999984 666777764 344666666532 33456677665
Q ss_pred ----CCCcEEEEEeCCCCceEEEEeC-CCChHHHHHH
Q 019378 136 ----DSIPVVLVVDPITGQKMRSWCG-MVQPESLLED 167 (342)
Q Consensus 136 ----~~~P~l~ii~p~tG~~l~~~~G-~~~~~~~l~~ 167 (342)
.+.|+++++. +|+.+.++.| ..+.++|...
T Consensus 85 ~~~i~~~PT~v~~k--~Gk~v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 85 PTSFMGTPTFVHIT--DGKQVSVRCGSSTTAQELQDI 119 (122)
T ss_pred cccCCCCCEEEEEe--CCeEEEEEeCCCCCHHHHHHH
Confidence 4599999997 6999999989 4556666543
No 70
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.11 E-value=1.7e-05 Score=62.46 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=67.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
.+|++. ....+|+++|+++++||..|..|... | ..+.+.+. .++.+..+|.+.. ...+++.|++.++|+++
T Consensus 8 ~~~~~~---~~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 8 SNFDKV---VGDDKKDVLVEFYAPWCGHCKNLAPE-Y--EKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLK 80 (105)
T ss_pred hcHHHH---hcCCCCcEEEEEECCCCHHHHhhChH-H--HHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEE
Confidence 345553 34457899999999999999998432 1 22333333 3688888877653 45788999999999999
Q ss_pred EEeCCCCceEEEEeCCCChHHHHH
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
++.+ +|.....+.|..+.+.+..
T Consensus 81 ~~~~-~~~~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 81 FFPK-GSTEPVKYEGGRDLEDLVK 103 (105)
T ss_pred EEeC-CCCCccccCCccCHHHHHh
Confidence 9986 4455667788888877754
No 71
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.08 E-value=5.5e-05 Score=62.48 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=72.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcc--hhhhhhcccCC----HHHHHHH-hccEEEEEeecCChhHHHHHHhCCCC
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFS--SHMLNRDTWAN----EAVSQTI-STNFIFWQVYDDTSEGKKVCTYYKLD 136 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~--~~~f~rdvl~~----~~V~~~i-~~~FV~w~~~~~s~eg~~~~~~y~v~ 136 (342)
..+|++.+ ++..++++|++...||.+ |+.+ .-. +.-.+++ .....+..+|++. ...+++.|+|.
T Consensus 16 ~~nF~~~v---~~~~~~vvv~f~a~wc~p~~Ck~~----~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~ 86 (120)
T cd03065 16 EKNYKQVL---KKYDVLCLLYHEPVESDKEAQKQF----QMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLD 86 (120)
T ss_pred hhhHHHHH---HhCCceEEEEECCCcCChhhChhh----cchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCc
Confidence 35566554 456779999999999977 8732 123 2223344 3468899888875 47899999999
Q ss_pred CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 137 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 137 ~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
++|+++++. +|+.+. +.|..+.+.+...|...+
T Consensus 87 ~iPTl~lfk--~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFK--DDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEE--CCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999997 689887 999999999988887654
No 72
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.08 E-value=4.2e-05 Score=69.90 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=78.5
Q ss_pred cccccHHHHHHHHH-HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 62 MFNGSFEKAKDAAS-VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak-~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
+-..+|++.+.... ..++++||+|+.+||..|+.+... | +++.+-++..+.+..+|.+ +...+++.|++.+||+
T Consensus 35 Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 35 LNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPT 109 (224)
T ss_pred CCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCE
Confidence 34668888776553 357899999999999999999654 3 4555555666666665554 3457899999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+.+++ +|+.+....|..+.+++...+..-+.
T Consensus 110 l~~f~--~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 110 LLLFD--KGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEE--CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 99998 58877777788888888766655553
No 73
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.07 E-value=4.6e-05 Score=62.08 Aligned_cols=78 Identities=9% Similarity=0.204 Sum_probs=60.0
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCC
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 148 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~t 148 (342)
...+.+++++++|+|+++||..|+.+. +.+.++.++ +..++.+|++. ...+++.|++.++|+++++. .
T Consensus 15 ~~~~i~~~~~vvV~f~a~~c~~C~~~~------p~l~~la~~~~~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk--~ 84 (113)
T cd02989 15 FFEIVKSSERVVCHFYHPEFFRCKIMD------KHLEILAKKHLETKFIKVNAEK--APFLVEKLNIKVLPTVILFK--N 84 (113)
T ss_pred HHHHHhCCCcEEEEEECCCCccHHHHH------HHHHHHHHHcCCCEEEEEEccc--CHHHHHHCCCccCCEEEEEE--C
Confidence 334445679999999999999999985 344444443 46777777655 44689999999999999997 6
Q ss_pred CceEEEEeCC
Q 019378 149 GQKMRSWCGM 158 (342)
Q Consensus 149 G~~l~~~~G~ 158 (342)
|+.+.++.|.
T Consensus 85 G~~v~~~~g~ 94 (113)
T cd02989 85 GKTVDRIVGF 94 (113)
T ss_pred CEEEEEEECc
Confidence 8999998884
No 74
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.06 E-value=6.5e-05 Score=59.11 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=62.5
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~ 155 (342)
+.+++++|+|+++||..|+.|... | ..+.+-+...+.+..+|.+. ...+++.|++.++|+++++.+. ......+
T Consensus 16 ~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~~P~~~~~~~~-~~~~~~~ 89 (103)
T cd03001 16 NSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALKGIVKVGAVDADV--HQSLAQQYGVRGFPTIKVFGAG-KNSPQDY 89 (103)
T ss_pred cCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCceEEEEECcc--hHHHHHHCCCCccCEEEEECCC-Ccceeec
Confidence 457789999999999999999532 2 22333444556666666653 4568899999999999999852 2455678
Q ss_pred eCCCChHHHHHH
Q 019378 156 CGMVQPESLLED 167 (342)
Q Consensus 156 ~G~~~~~~~l~~ 167 (342)
.|..+.+.+...
T Consensus 90 ~g~~~~~~l~~~ 101 (103)
T cd03001 90 QGGRTAKAIVSA 101 (103)
T ss_pred CCCCCHHHHHHH
Confidence 888888877654
No 75
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.05 E-value=2.3e-05 Score=64.47 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=60.4
Q ss_pred HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc-EEEEEeecCCh---------------------hHHHH
Q 019378 72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTS---------------------EGKKV 129 (342)
Q Consensus 72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~-FV~w~~~~~s~---------------------eg~~~ 129 (342)
..+.-.+|+++|+|.++||..|..+.. .+.++-+.. +.++.++.+.. ....+
T Consensus 19 ~~~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 92 (127)
T cd03010 19 TSADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRV 92 (127)
T ss_pred cHHHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchH
Confidence 334445899999999999999998653 333333322 45555443211 12346
Q ss_pred HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHH
Q 019378 130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESL 164 (342)
Q Consensus 130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~ 164 (342)
+..|++..+|+.+|||+ +|+++.++.|.++.+.+
T Consensus 93 ~~~~~v~~~P~~~~ld~-~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 93 GIDLGVYGVPETFLIDG-DGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHhcCCCCCCeEEEECC-CceEEEEEeccCChHhc
Confidence 67899999999999997 69999999998887643
No 76
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.04 E-value=4.4e-05 Score=66.06 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=68.0
Q ss_pred HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh--------------------HHHHHH
Q 019378 72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------------GKKVCT 131 (342)
Q Consensus 72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e--------------------g~~~~~ 131 (342)
..+.-.+|+++|+|.++||..|......+ +....++-..++.++.++.+... ...+++
T Consensus 55 ~l~~~~~k~~~l~f~a~~C~~C~~~~~~l--~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 132 (173)
T PRK03147 55 ELKDLKGKGVFLNFWGTWCKPCEKEMPYM--NELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID 132 (173)
T ss_pred eHHHcCCCEEEEEEECCcCHHHHHHHHHH--HHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence 33344689999999999999998864221 11122222334667777665432 235678
Q ss_pred hCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 132 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 132 ~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
.|++..+|+++||++ +|+++..+.|..+.+++.+.|..
T Consensus 133 ~~~v~~~P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 133 AYGVGPLPTTFLIDK-DGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred HcCCCCcCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHH
Confidence 899999999999997 78999999999998888776653
No 77
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.02 E-value=0.0001 Score=60.06 Aligned_cols=95 Identities=11% Similarity=0.049 Sum_probs=66.4
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 150 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~ 150 (342)
+..+....+.++|+++.+||.+|+.+.+ +|.. +.+.. ...-+..+|++. ...++..|++.++|+++|.+. |.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~-~l~~--la~~~-~~i~~~~vd~d~--~~~l~~~~~v~~vPt~~i~~~--g~ 86 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQ-LLEE--LSELS-DKLKLEIYDFDE--DKEKAEKYGVERVPTTIFLQD--GG 86 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHH-HHHH--HHHhc-CceEEEEEeCCc--CHHHHHHcCCCcCCEEEEEeC--Ce
Confidence 3445567888999999999999998843 2221 11111 345566667664 567999999999999999973 33
Q ss_pred eEE--EEeCCCChHHHHHHHHhhhh
Q 019378 151 KMR--SWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 151 ~l~--~~~G~~~~~~~l~~L~~~l~ 173 (342)
... +..|..+..+|.+.|..+++
T Consensus 87 ~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 87 KDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ecceEEEEecCchHHHHHHHHHHHh
Confidence 222 57798888888887776664
No 78
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.96 E-value=0.00022 Score=57.96 Aligned_cols=101 Identities=9% Similarity=0.037 Sum_probs=76.2
Q ss_pred HHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCC--CcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCC
Q 019378 49 DNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDT 123 (342)
Q Consensus 49 ~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~--~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s 123 (342)
+.|..+-+= |-.-..+|++-. +.+..++|.|+.+| |.+|..+. +.+.++.++ .+.++.+|++.
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~------P~leela~e~~~~v~f~kVdid~ 71 (111)
T cd02965 4 ARLQTRHGW--PRVDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVA------VVLPELLKAFPGRFRAAVVGRAD 71 (111)
T ss_pred HHHHHhcCC--cccccccHHHHH----hCCCCEEEEecCCcccCcchhhhH------hHHHHHHHHCCCcEEEEEEECCC
Confidence 445554432 234567888655 67788899999996 99999984 445555543 46677777776
Q ss_pred hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHH
Q 019378 124 SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 165 (342)
Q Consensus 124 ~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l 165 (342)
.. .++..|+|.++|+++++. +|+.+..+.|..+.+++.
T Consensus 72 ~~--~la~~f~V~sIPTli~fk--dGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 72 EQ--ALAARFGVLRTPALLFFR--DGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CH--HHHHHcCCCcCCEEEEEE--CCEEEEEEeCccCHHHHh
Confidence 54 899999999999999997 699999999998888775
No 79
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.95 E-value=4.8e-05 Score=66.91 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=62.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
..|.+++..+. .+++++|+|+.+||.+|+.|+. .+..+..+ +..|+.++++.. .++..|++..+|+++
T Consensus 71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~~------~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~vPTll 140 (175)
T cd02987 71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALNS------SLLCLAAEYPAVKFCKIRASAT---GASDEFDTDALPALL 140 (175)
T ss_pred HHHHHHHHhcC-CCcEEEEEEECCCCchHHHHHH------HHHHHHHHCCCeEEEEEeccch---hhHHhCCCCCCCEEE
Confidence 45555554322 2359999999999999999963 34444443 578888888753 788999999999999
Q ss_pred EEeCCCCceEEEEeCC
Q 019378 143 VVDPITGQKMRSWCGM 158 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~ 158 (342)
|+- .|+.+.++.|.
T Consensus 141 lyk--~G~~v~~~vG~ 154 (175)
T cd02987 141 VYK--GGELIGNFVRV 154 (175)
T ss_pred EEE--CCEEEEEEech
Confidence 997 69999998874
No 80
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.89 E-value=8.4e-05 Score=61.54 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh------ccEEEEEeecCChh----------------------
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS------TNFIFWQVYDDTSE---------------------- 125 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~------~~FV~w~~~~~s~e---------------------- 125 (342)
+.-.+|++||+|+.+||..|..+.. .+.++.+ .++.++.++++..+
T Consensus 14 ~~~~gk~vll~Fwa~wC~~C~~~~p------~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T cd03009 14 SSLEGKTVGLYFSASWCPPCRAFTP------KLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRER 87 (131)
T ss_pred HHhCCcEEEEEEECCCChHHHHHhH------HHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHH
Confidence 3346899999999999999998743 3433322 14655655655332
Q ss_pred HHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378 126 GKKVCTYYKLDSIPVVLVVDPITGQKMRS 154 (342)
Q Consensus 126 g~~~~~~y~v~~~P~l~ii~p~tG~~l~~ 154 (342)
...++..|++..+|+++||++ +|+++.+
T Consensus 88 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~ 115 (131)
T cd03009 88 RSRLNRTFKIEGIPTLIILDA-DGEVVTT 115 (131)
T ss_pred HHHHHHHcCCCCCCEEEEECC-CCCEEcc
Confidence 135678899999999999997 6887644
No 81
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=9.8e-05 Score=69.24 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=77.6
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
-.-+|++.+.++.+ .+|+||||+++||.+|..|...+ +.+..--+..|++-.+|++.. ..++..++|.++|+++
T Consensus 29 T~anfe~~V~~~S~-~~PVlV~fWap~~~~c~qL~p~L---ekla~~~~G~f~LakvN~D~~--p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 29 TEANFEQEVIQSSR-EVPVLVDFWAPWCGPCKQLTPTL---EKLAAEYKGKFKLAKVNCDAE--PMVAAQFGVQSIPTVY 102 (304)
T ss_pred hHhHHHHHHHHHcc-CCCeEEEecCCCCchHHHHHHHH---HHHHHHhCCceEEEEecCCcc--hhHHHHhCcCcCCeEE
Confidence 34567777777644 48999999999999999996332 233333345899999888764 4588999999999999
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.+- .|+.|.-+.|....+.+-..|..++.
T Consensus 103 af~--dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 103 AFK--DGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred Eee--CCcCccccCCCCcHHHHHHHHHHhcC
Confidence 886 69999999997777666555554444
No 82
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.85 E-value=0.00018 Score=61.92 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhHHHHHHhCCCCC---
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDS--- 137 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg~~~~~~y~v~~--- 137 (342)
.+|++.+.. ..+++++|+|+++||.+|+.+.. .+.++.+ .++.+..+|++... .+++.|++.+
T Consensus 36 ~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p------~l~~la~~~~~~~v~f~~VDvd~~~--~la~~~~V~~~~~ 105 (152)
T cd02962 36 KTLEEELER--DKRVTWLVEFFTTWSPECVNFAP------VFAELSLKYNNNNLKFGKIDIGRFP--NVAEKFRVSTSPL 105 (152)
T ss_pred HHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHcccCCeEEEEEECCCCH--HHHHHcCceecCC
Confidence 445554432 35689999999999999999853 3334433 35888998887643 6888899877
Q ss_pred ---CcEEEEEeCCCCceEEEEeC
Q 019378 138 ---IPVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 138 ---~P~l~ii~p~tG~~l~~~~G 157 (342)
+|+++++. +|+.+.++.|
T Consensus 106 v~~~PT~ilf~--~Gk~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQ--GGKEVARRPY 126 (152)
T ss_pred cCCCCEEEEEE--CCEEEEEEec
Confidence 99999987 7999999887
No 83
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.79 E-value=7.9e-05 Score=58.60 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=58.3
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCCh--hH------------------
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTS--EG------------------ 126 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~--eg------------------ 126 (342)
+..+.-.+|+++|++..+||..|..+. +.+.++.. .++.++.++.+.. +.
T Consensus 12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 12 VSLSDLKGKVVLVNFWASWCPPCRAEM------PELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred eehHHcCCCEEEEEeecccChhHHHHh------HHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 444455589999999999999998753 33333332 3567777777652 22
Q ss_pred -HHHHHhCCCCCCcEEEEEeCCCCceEEEEeC
Q 019378 127 -KKVCTYYKLDSIPVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 127 -~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G 157 (342)
..++..|++..+|.++|+|+ +|+++....|
T Consensus 86 ~~~~~~~~~~~~~P~~~l~d~-~g~v~~~~~g 116 (116)
T cd02966 86 DGELAKAYGVRGLPTTFLIDR-DGRIRARHVG 116 (116)
T ss_pred cchHHHhcCcCccceEEEECC-CCcEEEEecC
Confidence 45778899999999999998 6888887765
No 84
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.78 E-value=0.00017 Score=72.00 Aligned_cols=98 Identities=11% Similarity=0.209 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
.+|++++ +++++++|+|+++||..|+.+.... ..+.+.+.. ++.+..+|.+. ...+++.|++.+||++
T Consensus 9 ~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 9 DNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSGYPTL 79 (462)
T ss_pred HHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCccccEE
Confidence 3455544 5689999999999999999996433 234444432 37777777654 4678999999999999
Q ss_pred EEEeCCCCce-EEEEeCCCChHHHHHHHHhhhh
Q 019378 142 LVVDPITGQK-MRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 142 ~ii~p~tG~~-l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.++. .|+. +....|..+.+.|...+...+.
T Consensus 80 ~~~~--~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 80 KIFR--NGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEEe--CCccceeEecCCCCHHHHHHHHHHhcC
Confidence 9986 4666 6788999999888877766654
No 85
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.77 E-value=0.0002 Score=71.98 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=77.8
Q ss_pred HHHhhCCCCcC-cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHH
Q 019378 51 LASLYRPPFHL-MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKK 128 (342)
Q Consensus 51 l~~~f~pp~~~-~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~ 128 (342)
-.++|..+.-+ +-..+|++.+.. +..++++||+|+.+||..|+.|... | +++.+-+.. .+.+..++++..+...
T Consensus 344 ~~dl~~~~~Vv~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~-~--eelA~~~~~~~v~~~kVdvD~~~~~~ 419 (463)
T TIGR00424 344 VADIFDSNNVVSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEAS-Y--LELAEKLAGSGVKVAKFRADGDQKEF 419 (463)
T ss_pred cccccCCCCeEECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCcEEEEEECCCCccHH
Confidence 55677544332 445578887643 5789999999999999999999654 2 445554544 3677778887643333
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEEe-CCCChHHHHHHHH
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSWC-GMVQPESLLEDLV 169 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~-G~~~~~~~l~~L~ 169 (342)
.++.|+|.+||+++++... +....... |.-+.+.|+..+.
T Consensus 420 ~~~~~~I~~~PTii~Fk~g-~~~~~~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 420 AKQELQLGSFPTILFFPKH-SSRPIKYPSEKRDVDSLMSFVN 460 (463)
T ss_pred HHHHcCCCccceEEEEECC-CCCceeCCCCCCCHHHHHHHHH
Confidence 4578999999999999753 22233454 4678888876544
No 86
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.77 E-value=8.2e-05 Score=63.53 Aligned_cols=74 Identities=15% Similarity=0.305 Sum_probs=50.7
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH---h--------ccEEEEEeecCCh------------------
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---S--------TNFIFWQVYDDTS------------------ 124 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~--------~~FV~w~~~~~s~------------------ 124 (342)
+.=++|+++|||.++||.+|..+...+ .++- + ++|.++.++.+..
T Consensus 21 s~~kgk~vlL~FwAsWCppCr~e~P~L------~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 21 ARLENRVLLLFFGAVVSPQCQLFAPKL------KDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred HHhCCCEEEEEEECCCChhHHHHHHHH------HHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 344689999999999999999975332 2211 1 1244444444322
Q ss_pred -----hHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378 125 -----EGKKVCTYYKLDSIPVVLVVDPITGQKMRS 154 (342)
Q Consensus 125 -----eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~ 154 (342)
.+..++..|++..+|+++|||+ +|+++.+
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~-~G~Vv~~ 128 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKP-DGDVLAA 128 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECC-CCcEEee
Confidence 2235677899999999999998 6888755
No 87
>PTZ00102 disulphide isomerase; Provisional
Probab=97.76 E-value=0.00017 Score=72.67 Aligned_cols=98 Identities=9% Similarity=0.210 Sum_probs=73.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
..+|++++ ++++++||+|+++||..|+.+.... . .+.+.++ .++++..+|.+. ...++..|++.+||+
T Consensus 39 ~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~-~--~~a~~~~~~~~~i~~~~vd~~~--~~~l~~~~~i~~~Pt 109 (477)
T PTZ00102 39 DSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEY-K--KAAKMLKEKKSEIVLASVDATE--EMELAQEFGVRGYPT 109 (477)
T ss_pred hhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHH-H--HHHHHHHhcCCcEEEEEEECCC--CHHHHHhcCCCcccE
Confidence 34555544 5688999999999999999986542 2 2333333 357777777654 457899999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+.++.. |..+ ...|..+++.|+..|...+.
T Consensus 110 ~~~~~~--g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 110 IKFFNK--GNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEEEEC--CceE-EecCCCCHHHHHHHHHHhhC
Confidence 999984 5555 78899999999888877655
No 88
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.73 E-value=0.00023 Score=57.98 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=56.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
..+|++.+. ..+|+++|+|+++||..|+.|.. +|. .+.+-+++ .+.+..+|.+......+++.|++..+|+
T Consensus 8 ~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 8 AASFNSALL---GSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 345666664 44589999999999999999964 343 34444443 2556666665555678899999999999
Q ss_pred EEEEeC
Q 019378 141 VLVVDP 146 (342)
Q Consensus 141 l~ii~p 146 (342)
+.++.+
T Consensus 82 ~~lf~~ 87 (114)
T cd02992 82 LRYFPP 87 (114)
T ss_pred EEEECC
Confidence 999976
No 89
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.73 E-value=0.00024 Score=72.33 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=62.2
Q ss_pred cCCeEEEEEecCCCcchhhhhhccc------C-------------------CHHHHHHHhc-cEEEEEeecCChhHHHHH
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTW------A-------------------NEAVSQTIST-NFIFWQVYDDTSEGKKVC 130 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl------~-------------------~~~V~~~i~~-~FV~w~~~~~s~eg~~~~ 130 (342)
.+|++||+|+.+||.+|......+= . ..++.++++. +|..|.++.+. ...++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~--~~~la 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN--GGTLA 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc--cHHHH
Confidence 7999999999999999999642110 0 0112222221 22222222222 34577
Q ss_pred HhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378 131 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 131 ~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~ 169 (342)
+.|++..+|+++||++ +|+++..+.|.++.+++...|.
T Consensus 133 k~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHH
Confidence 8999999999999997 7999999999999988877666
No 90
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.71 E-value=0.00021 Score=56.24 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=63.1
Q ss_pred CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCC--CCcEEEEEeCCCCceEEEE
Q 019378 78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~--~~P~l~ii~p~tG~~l~~~ 155 (342)
+++++|.|.++||.+|..+...+ .+|.+-.+..+.|..+|.+ +...+++.|++. .+|+++++...+|......
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~---~~vA~~~~~~v~f~~vd~~--~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERF---KEVAKKFKGKLLFVVVDAD--DFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHH---HHHHHHhCCeEEEEEEchH--hhHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence 78999999999999999985321 2344444456677665554 456789999998 9999999997556655545
Q ss_pred eCCCChHHHHHHHHhh
Q 019378 156 CGMVQPESLLEDLVPF 171 (342)
Q Consensus 156 ~G~~~~~~~l~~L~~~ 171 (342)
.|..+.+.+...|..+
T Consensus 87 ~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 87 EEELTAESLEEFVEDF 102 (103)
T ss_pred ccccCHHHHHHHHHhh
Confidence 5556777776555443
No 91
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.68 E-value=0.00058 Score=63.54 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=75.7
Q ss_pred CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh--hH-------HHHHHhCCCCCCcEEEEEeCC
Q 019378 78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS--EG-------KKVCTYYKLDSIPVVLVVDPI 147 (342)
Q Consensus 78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~--eg-------~~~~~~y~v~~~P~l~ii~p~ 147 (342)
.+|=||+|+.++|..|+.|. +-|+.+-+. +|-+..+++|.. .+ ...++.+++..+|++++|+|.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~a------pil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMA------PVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred hceeEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 47999999999999999984 556666665 588888887754 11 346788999999999999998
Q ss_pred CCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 148 TGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 148 tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
|++..-.-.|.++.++|++.|..++..+
T Consensus 224 t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 8877777789999999999999888766
No 92
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.64 E-value=0.00029 Score=54.72 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=45.6
Q ss_pred CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCCh-----------------------hHHHHHHh
Q 019378 78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTS-----------------------EGKKVCTY 132 (342)
Q Consensus 78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~-----------------------eg~~~~~~ 132 (342)
||+++|||.++||.+|..+...+- ++.+-+. .++.+..++.+.. ....+.+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~---~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLK---ELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHH---HHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHH---HHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 799999999999999998753321 1333333 4555555554432 12345678
Q ss_pred CCCCCCcEEEEEeCCCCce
Q 019378 133 YKLDSIPVVLVVDPITGQK 151 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~ 151 (342)
|++..+|+++||++ +|++
T Consensus 78 ~~i~~iP~~~lld~-~G~I 95 (95)
T PF13905_consen 78 YGINGIPTLVLLDP-DGKI 95 (95)
T ss_dssp TT-TSSSEEEEEET-TSBE
T ss_pred CCCCcCCEEEEECC-CCCC
Confidence 99999999999997 6763
No 93
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.63 E-value=0.00034 Score=58.16 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH---hc---cEEEEEeecCChh-----------------
Q 019378 69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---ST---NFIFWQVYDDTSE----------------- 125 (342)
Q Consensus 69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~~---~FV~w~~~~~s~e----------------- 125 (342)
+-+..+.-.+|++||+|.++||..|.... +.+.++. .+ ++.++.++.+...
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 44555666789999999999999999864 2333322 22 3445545444321
Q ss_pred ------HHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378 126 ------GKKVCTYYKLDSIPVVLVVDPITGQKMRS 154 (342)
Q Consensus 126 ------g~~~~~~y~v~~~P~l~ii~p~tG~~l~~ 154 (342)
...+++.|++..+|+++||++ +|+++.+
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~-~G~iv~~ 115 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKP-DGDVVTT 115 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECC-CCCEEch
Confidence 234667899999999999996 6887643
No 94
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.61 E-value=0.00031 Score=57.87 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=50.3
Q ss_pred cCCeEEEEEec-------CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChh-----HHHHHHhCCCC-CCcE
Q 019378 77 QDKWLLVNLQS-------TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSE-----GKKVCTYYKLD-SIPV 140 (342)
Q Consensus 77 ~~K~LlV~l~~-------~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~e-----g~~~~~~y~v~-~~P~ 140 (342)
.+++++|+|++ +||.+|..+. +.|.++..+ +..++.++++... ...+...|++. ++|+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~------P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT 93 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAE------PVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPT 93 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhc------hhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCE
Confidence 57999999999 9999999974 445555543 6788889987632 46788899998 9999
Q ss_pred EEEEe
Q 019378 141 VLVVD 145 (342)
Q Consensus 141 l~ii~ 145 (342)
++++.
T Consensus 94 ~~~~~ 98 (119)
T cd02952 94 LLRWK 98 (119)
T ss_pred EEEEc
Confidence 99995
No 95
>PTZ00062 glutaredoxin; Provisional
Probab=97.58 E-value=0.00075 Score=60.81 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=59.1
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 154 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~ 154 (342)
....+++||+++||.+|..|+ +-+.++..+ ++.|+.++.+ |.|..+|+++++. +|+.+.+
T Consensus 16 ~~g~~vl~f~a~w~~~C~~m~------~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~--~g~~i~r 77 (204)
T PTZ00062 16 NTGKLVLYVKSSKEPEYEQLM------DVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQ--NSQLINS 77 (204)
T ss_pred CCCcEEEEEeCCCCcchHHHH------HHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEE--CCEEEee
Confidence 337789999999999999985 333444443 6888888876 9999999999997 6999999
Q ss_pred EeCCCChHHHHHHHHhhh
Q 019378 155 WCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 155 ~~G~~~~~~~l~~L~~~l 172 (342)
+.|. ++.++...|....
T Consensus 78 ~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 78 LEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred eeCC-CHHHHHHHHHHHc
Confidence 9984 5666665554443
No 96
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.57 E-value=0.00073 Score=62.57 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=74.1
Q ss_pred CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChh---------HHHHHHhCCCCCCcEEEEEeCC
Q 019378 78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE---------GKKVCTYYKLDSIPVVLVVDPI 147 (342)
Q Consensus 78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~e---------g~~~~~~y~v~~~P~l~ii~p~ 147 (342)
++|=||+|+.++|..|+.|. +-|+.+-+. +|-++.+++|..- ....+..+++..+|.+++|+|.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~a------Pil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~ 216 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLA------QVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK 216 (248)
T ss_pred hcceEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence 46999999999999999994 566667665 5888888876411 1124568999999999999998
Q ss_pred CCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 148 TGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 148 tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
|++..-.-.|.++.++|.+.|..+...+
T Consensus 217 t~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 217 SGSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 8888777889999999999998887655
No 97
>PTZ00102 disulphide isomerase; Provisional
Probab=97.57 E-value=0.0003 Score=70.87 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=74.0
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
-..+|++++ ...+|++||+|+++||..|+.|.. +|. ++.+... .++++..+|.+..+ ..+..|++.++|+
T Consensus 363 ~~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~Pt 434 (477)
T PTZ00102 363 VGNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFPT 434 (477)
T ss_pred cccchHHHH---hcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccCe
Confidence 345666554 467899999999999999999853 343 2222333 35777777776533 3577899999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
++++.+ ++++..++.|..+.+.+...|......
T Consensus 435 ~~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 435 ILFVKA-GERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEEEEC-CCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 999985 445445789999999888777666543
No 98
>PLN02309 5'-adenylylsulfate reductase
Probab=97.57 E-value=0.0007 Score=68.06 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=74.1
Q ss_pred HHhhCCCCcC-cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhHHHH
Q 019378 52 ASLYRPPFHL-MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGKKV 129 (342)
Q Consensus 52 ~~~f~pp~~~-~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg~~~ 129 (342)
+++|..+..+ +-..+|++.+. ....+|++||+|+.+||..|+.|... |. ++.+-+. .++.+..+|++..+ ..+
T Consensus 339 ~dl~~~~~Vv~Lt~~nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~-~e--~LA~~~~~~~V~f~kVD~d~~~-~~l 413 (457)
T PLN02309 339 ADIFNSQNVVALSRAGIENLLK-LENRKEPWLVVLYAPWCPFCQAMEAS-YE--ELAEKLAGSGVKVAKFRADGDQ-KEF 413 (457)
T ss_pred ccccCCCCcEECCHHHHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHH-HH--HHHHHhccCCeEEEEEECCCcc-hHH
Confidence 5667544333 23344554443 34789999999999999999999653 22 3444444 35999998887322 356
Q ss_pred HH-hCCCCCCcEEEEEeCCCCceEEEEe-CCCChHHHHHHHHh
Q 019378 130 CT-YYKLDSIPVVLVVDPITGQKMRSWC-GMVQPESLLEDLVP 170 (342)
Q Consensus 130 ~~-~y~v~~~P~l~ii~p~tG~~l~~~~-G~~~~~~~l~~L~~ 170 (342)
+. .|+|.+||+|+++.+.+.. ..... |.-+.+.|+..+..
T Consensus 414 a~~~~~I~~~PTil~f~~g~~~-~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 414 AKQELQLGSFPTILLFPKNSSR-PIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred HHhhCCCceeeEEEEEeCCCCC-eeecCCCCcCHHHHHHHHHH
Confidence 65 6999999999999753222 22344 45688887765543
No 99
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.54 E-value=0.00092 Score=60.77 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=68.9
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh---------hHHHHHHhCCCCCCcEEEEEeC
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------EGKKVCTYYKLDSIPVVLVVDP 146 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~---------eg~~~~~~y~v~~~P~l~ii~p 146 (342)
.++|=||+|+.++|..|+.+. +-|..+-++ +|-+..+++|.. ....++..+++..+|++++|+|
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~------pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~ 192 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQA------PILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNP 192 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHH------HHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEEC
Confidence 468999999999999999984 556666655 587888777631 1244677899999999999999
Q ss_pred CCCceEEEEeCCCChHHHHHHH
Q 019378 147 ITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 147 ~tG~~l~~~~G~~~~~~~l~~L 168 (342)
.+++..-.-.|.++.++|++.|
T Consensus 193 ~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 193 NTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCCeEEEEeeecCCHHHHHHhh
Confidence 8777777778999999998765
No 100
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.51 E-value=0.00097 Score=58.89 Aligned_cols=86 Identities=10% Similarity=0.134 Sum_probs=66.4
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh-----------hHHHHHHhCCC--CCCcEEEEEeCC
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS-----------EGKKVCTYYKL--DSIPVVLVVDPI 147 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~-----------eg~~~~~~y~v--~~~P~l~ii~p~ 147 (342)
||+|..+||..|+.+. +.+.++-++ .|.++.++.+.. .+..+...|++ ..+|+.+|||+
T Consensus 73 lV~FwaswCp~C~~e~------P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~- 145 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD------PVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNV- 145 (181)
T ss_pred EEEEECCCCHhHHHHH------HHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeC-
Confidence 7789999999999974 556666655 588888776633 12345678884 69999999997
Q ss_pred CCceE-EEEeCCCChHHHHHHHHhhhhc
Q 019378 148 TGQKM-RSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 148 tG~~l-~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.|.++ ....|.++.+++...|...+..
T Consensus 146 ~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 146 NTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred CCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 67775 5789999999998888887765
No 101
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.47 E-value=0.00069 Score=75.01 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=69.5
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeec---CC---hh-------------------HH
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYD---DT---SE-------------------GK 127 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~---~s---~e-------------------g~ 127 (342)
.+|++||+|+.+||.+|.... |.+.++-+ .+|+++++.. +. .+ ..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~------P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVL------PDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHh------HHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 699999999999999999854 44444433 2477777642 11 11 12
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
.+...|++..+|+++|||+ +|+++.++.|....+.+.+.|...+..+
T Consensus 493 ~~~~~~~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~~~ 539 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQYY 539 (1057)
T ss_pred HHHHhcCCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence 4567889999999999997 6999999999988888888888777654
No 102
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.46 E-value=0.0018 Score=57.90 Aligned_cols=89 Identities=17% Similarity=0.377 Sum_probs=61.9
Q ss_pred hCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHh
Q 019378 55 YRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTY 132 (342)
Q Consensus 55 f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~ 132 (342)
||...++ -..+|.+.+..| ..++|++|+|+.+||..|..|+ +.+..+... ...|+.++++. .+..
T Consensus 81 ~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~------~~l~~LA~k~~~vkFvkI~ad~-----~~~~ 147 (192)
T cd02988 81 FGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLN------QHLSELARKFPDTKFVKIISTQ-----CIPN 147 (192)
T ss_pred CCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHH------HHHHHHHHHCCCCEEEEEEhHH-----hHhh
Confidence 4544333 334555554433 2346999999999999999996 334444443 35666767653 3678
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~ 158 (342)
|++..+|+++|+- +|+.+.++.|.
T Consensus 148 ~~i~~lPTlliyk--~G~~v~~ivG~ 171 (192)
T cd02988 148 YPDKNLPTILVYR--NGDIVKQFIGL 171 (192)
T ss_pred CCCCCCCEEEEEE--CCEEEEEEeCc
Confidence 9999999999997 69999998874
No 103
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00091 Score=61.21 Aligned_cols=91 Identities=14% Similarity=0.231 Sum_probs=74.8
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 150 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~ 150 (342)
.++.-+|.++|.|+.+||.+|+.. .|-+.++-+. .+||+.+|++ +....+..|+|...|++++.- +|.
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~I------aP~Fs~lankYp~aVFlkVdVd--~c~~taa~~gV~amPTFiff~--ng~ 85 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRI------APIFSDLANKYPGAVFLKVDVD--ECRGTAATNGVNAMPTFIFFR--NGV 85 (288)
T ss_pred hhccCceEEEEEEEecccchHHhh------hhHHHHhhhhCcccEEEEEeHH--HhhchhhhcCcccCceEEEEe--cCe
Confidence 345678999999999999999996 4667777776 5999998876 577788999999999999885 789
Q ss_pred eEEEEeCCCChHHHHHHHHhhhhc
Q 019378 151 KMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 151 ~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.+.+++| .++.-|-+.+..+++.
T Consensus 86 kid~~qG-Ad~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 86 KIDQIQG-ADASGLEEKVAKYAST 108 (288)
T ss_pred EeeeecC-CCHHHHHHHHHHHhcc
Confidence 9999999 5677777777777764
No 104
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.35 E-value=0.0023 Score=55.48 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=65.0
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCCh--------hH-------------------HH
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTS--------EG-------------------KK 128 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~--------eg-------------------~~ 128 (342)
.+|++||+|+.++|..|...-..+ .++.+-+ +.++.++.+..++. +. ..
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l---~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~ 100 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRL---NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE 100 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHH---HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence 679999999999999997543221 1222222 34677787776542 11 13
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEE------e---CCCChHHHHHHHHhhhhcCC
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSW------C---GMVQPESLLEDLVPFMDGGP 176 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~------~---G~~~~~~~l~~L~~~l~~~~ 176 (342)
+++.|++...|+++|||+ +|+++... . +..+.+++...|...+...+
T Consensus 101 ~~~~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 101 VAKAYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHHHcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 456788889999999998 78887553 1 22466788888888887653
No 105
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.35 E-value=0.0015 Score=52.34 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=44.0
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhHHHH-----------------HHhCCCCCC
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKV-----------------CTYYKLDSI 138 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg~~~-----------------~~~y~v~~~ 138 (342)
++|+++|+|.++||..|......+ .++.+.....+.++.+..++ .+...+ ...|++..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l---~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVI---RSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHH---HHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 589999999999999999875332 12333233445444443222 223233 345666777
Q ss_pred cEEEEEeCCCCceE
Q 019378 139 PVVLVVDPITGQKM 152 (342)
Q Consensus 139 P~l~ii~p~tG~~l 152 (342)
|+.+|||+ .|+++
T Consensus 97 P~~~vid~-~G~v~ 109 (114)
T cd02967 97 PYAVLLDE-AGVIA 109 (114)
T ss_pred CeEEEECC-CCeEE
Confidence 88888886 56654
No 106
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.33 E-value=0.0016 Score=58.90 Aligned_cols=90 Identities=10% Similarity=0.101 Sum_probs=63.8
Q ss_pred cCCeEEEEEe--cCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 77 QDKWLLVNLQ--STKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 77 ~~K~LlV~l~--~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
.++.|+++++ .+||.+|+.+.. -+.++... +.-+..++++..+...++..|++.++|+++++. .|+.+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p------~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~--~g~~~ 90 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQ------LLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILE--EGKDG 90 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHH------HHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEe--CCeee
Confidence 4566666555 289999999853 33333222 232334566666788999999999999999997 47777
Q ss_pred -EEEeCCCChHHHHHHHHhhhhc
Q 019378 153 -RSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 153 -~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.+..|..+.++|...|...+..
T Consensus 91 ~~~~~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 91 GIRYTGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred EEEEeecCCHHHHHHHHHHHHHh
Confidence 4889988888887777766543
No 107
>PHA02125 thioredoxin-like protein
Probab=97.29 E-value=0.0018 Score=48.59 Aligned_cols=72 Identities=15% Similarity=0.287 Sum_probs=51.0
Q ss_pred EEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC-C
Q 019378 81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM-V 159 (342)
Q Consensus 81 LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~-~ 159 (342)
++|+|+++||.+|+.+..- |. + + .|.+..+|. .+...++..|++.++|++. .|+.+..+.|. .
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~-l~-----~-~--~~~~~~vd~--~~~~~l~~~~~v~~~PT~~-----~g~~~~~~~G~~~ 64 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPM-LA-----N-V--EYTYVDVDT--DEGVELTAKHHIRSLPTLV-----NTSTLDRFTGVPR 64 (75)
T ss_pred CEEEEECCCCHhHHHHHHH-HH-----H-H--hheEEeeeC--CCCHHHHHHcCCceeCeEE-----CCEEEEEEeCCCC
Confidence 3799999999999998653 21 1 1 245555454 4466889999999999986 47888888895 2
Q ss_pred ChHHHHHHH
Q 019378 160 QPESLLEDL 168 (342)
Q Consensus 160 ~~~~~l~~L 168 (342)
+..++.+.|
T Consensus 65 ~~~~l~~~~ 73 (75)
T PHA02125 65 NVAELKEKL 73 (75)
T ss_pred cHHHHHHHh
Confidence 335565544
No 108
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.29 E-value=0.0012 Score=54.33 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=54.9
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecC------ChhH--------------
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDD------TSEG-------------- 126 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~------s~eg-------------- 126 (342)
+..+.-.+|+++|+|.+.||..|.... +.+.++.+ .++.++.++.+ +.+.
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~------p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~ 89 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTL------PYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPV 89 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHH------HHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCE
Confidence 344444789999999999999998753 23333332 35666666431 1221
Q ss_pred -----HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378 127 -----KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 127 -----~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~ 158 (342)
..+...|++..+|+.+|||+ +|+++..+.|.
T Consensus 90 ~~D~~~~~~~~~~v~~~P~~~vid~-~G~v~~~~~G~ 125 (126)
T cd03012 90 ANDNDYATWRAYGNQYWPALYLIDP-TGNVRHVHFGE 125 (126)
T ss_pred EECCchHHHHHhCCCcCCeEEEECC-CCcEEEEEecC
Confidence 12345688899999999997 69998888773
No 109
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.28 E-value=0.0024 Score=57.33 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=63.1
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecC--------C-hhHHHHHHhCCC-----
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDD--------T-SEGKKVCTYYKL----- 135 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~--------s-~eg~~~~~~y~v----- 135 (342)
+.-.+|++||++..+||..|..-. +.+.++.+ ..+.+++++.+ + .+...++..+++
T Consensus 35 ~~~kGkvvlv~fwAswC~~C~~e~------p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl 108 (199)
T PTZ00056 35 SSLKNKVLMITNSASKCGLTKKHV------DQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFF 108 (199)
T ss_pred HHhCCCEEEEEEECCCCCChHHHH------HHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceee
Confidence 334689999999999999997521 33333332 35777777642 2 234555554433
Q ss_pred -------------------------------CCCc---EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 136 -------------------------------DSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 136 -------------------------------~~~P---~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
..+| +.+|||+ .|.++.++.|..+++.+...|...+..
T Consensus 109 ~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~-~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 109 EPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK-SGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred eeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1122 4678886 799999999988988888877777653
No 110
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.25 E-value=0.0029 Score=56.15 Aligned_cols=89 Identities=15% Similarity=0.205 Sum_probs=56.3
Q ss_pred HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChh------------------HHHHHHhC
Q 019378 75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSE------------------GKKVCTYY 133 (342)
Q Consensus 75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~e------------------g~~~~~~y 133 (342)
...+|+++|+|.++||..|...-. .+.++.+ -+++++. .++.+ ...++..|
T Consensus 71 ~~~gk~vvl~F~atwCp~C~~~lp------~l~~~~~~~~~~vv~Is--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y 142 (189)
T TIGR02661 71 IAPGRPTLLMFTAPSCPVCDKLFP------IIKSIARAEETDVVMIS--DGTPAEHRRFLKDHELGGERYVVSAEIGMAF 142 (189)
T ss_pred hcCCCEEEEEEECCCChhHHHHHH------HHHHHHHhcCCcEEEEe--CCCHHHHHHHHHhcCCCcceeechhHHHHhc
Confidence 347899999999999999988643 2222222 2344332 22211 22456788
Q ss_pred CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 134 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 134 ~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
++..+|+.+|||+ .|+++.+ |.....+-++.+...+..
T Consensus 143 ~v~~~P~~~lID~-~G~I~~~--g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 143 QVGKIPYGVLLDQ-DGKIRAK--GLTNTREHLESLLEADRE 180 (189)
T ss_pred cCCccceEEEECC-CCeEEEc--cCCCCHHHHHHHHHHHHc
Confidence 9999999999997 6887754 555444445555555544
No 111
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.14 E-value=0.0049 Score=51.13 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=54.6
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------HHHHHhCCCC
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------KKVCTYYKLD 136 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------~~~~~~y~v~ 136 (342)
.+|+++|+|. +.+|..|......+ +....++-..++.++.+..++.+. ..++..|++.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l--~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDF--RDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 4889999988 57888887543321 111122222345555554444322 2455677877
Q ss_pred CC---------cEEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378 137 SI---------PVVLVVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 137 ~~---------P~l~ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
.+ |+.+|||+ +|+++..+.|......+-+
T Consensus 100 ~~~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred cccccccCCcceeEEEECC-CCEEEEEEecCCccchHHH
Confidence 77 99999997 7999999999876555543
No 112
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.09 E-value=0.0063 Score=45.58 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=54.5
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHH---hccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~ 158 (342)
++-|+++||..|+.+.. .+.++. +..+-+..+|.+. ....++.|++.++|++++ .|+ .++.|.
T Consensus 3 v~~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~vPt~~~----~g~--~~~~G~ 68 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKR------VVEEVAKEMGDAVEVEYINVME--NPQKAMEYGIMAVPAIVI----NGD--VEFIGA 68 (82)
T ss_pred EEEEECCCCcchHHHHH------HHHHHHHHhcCceEEEEEeCcc--CHHHHHHcCCccCCEEEE----CCE--EEEecC
Confidence 45677899999999853 333332 3446667777653 446778899999999975 355 278898
Q ss_pred CChHHHHHHHHhh
Q 019378 159 VQPESLLEDLVPF 171 (342)
Q Consensus 159 ~~~~~~l~~L~~~ 171 (342)
.+++++...|...
T Consensus 69 ~~~~~l~~~l~~~ 81 (82)
T TIGR00411 69 PTKEELVEAIKKR 81 (82)
T ss_pred CCHHHHHHHHHhh
Confidence 8999988877654
No 113
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.04 E-value=0.0076 Score=55.56 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=30.0
Q ss_pred CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.|+.+|||+ .|+++.++.|.++++++...|...+.
T Consensus 201 ~PttfLIDk-~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 201 NFEKFLVDK-NGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 589999997 79999999999999988887777653
No 114
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.03 E-value=0.0047 Score=50.67 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=65.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEEec--CCCc---chhhhhhcccCCHHHHHHHhccEEEEEeecCC---hhHHHHHHhCCC
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQS--TKEF---SSHMLNRDTWANEAVSQTISTNFIFWQVYDDT---SEGKKVCTYYKL 135 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~--~~~~---~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s---~eg~~~~~~y~v 135 (342)
..+|++++ ++++.+||-|+. +||. .|..|....-.. ....++-.++.+. .+...+++.|+|
T Consensus 8 ~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~a-------a~~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 8 TVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASA-------TDDLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred hhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhh-------cCceEEEEEecccccchhhHHHHHHhCC
Confidence 34566644 677999999999 8887 666664221110 1247788888865 556789999999
Q ss_pred C--CCcEEEEEeCCCCc--eEEEEeCC-CChHHHHHHHH
Q 019378 136 D--SIPVVLVVDPITGQ--KMRSWCGM-VQPESLLEDLV 169 (342)
Q Consensus 136 ~--~~P~l~ii~p~tG~--~l~~~~G~-~~~~~~l~~L~ 169 (342)
. .||+|.+... |. ......|. .+.+.|+..|.
T Consensus 77 ~~~gyPTl~lF~~--g~~~~~~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 77 DKESYPVIYLFHG--GDFENPVPYSGADVTVDALQRFLK 113 (116)
T ss_pred CcCCCCEEEEEeC--CCcCCCccCCCCcccHHHHHHHHH
Confidence 9 9999999873 53 33467786 88888876554
No 115
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=97.00 E-value=0.0053 Score=45.70 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=56.2
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
+|.||.++|+.+..++..++||..|-+.+.... +.+....+|+ |..+. + +.+.||.+.|+. +++|.+.+
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-g~~~~~qrL~--~~g~~--L--~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLI--YSGKQ--M--NDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhh-CCChhhEEEE--ECCeE--c--cCCCCHHHcCCCCCCEEEEEE
Confidence 688999999999999999999999999998763 6677788887 44553 4 457899999998 56676654
No 116
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.00 E-value=0.0034 Score=62.51 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=72.1
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCC
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSI 138 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~ 138 (342)
+...+|.+.+. ..++.+||+|+.+||..|..|... | .++.+.++. ++.+..+|.+..+ +.. |++..+
T Consensus 351 l~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~i~~~~id~~~n~---~~~-~~i~~~ 420 (462)
T TIGR01130 351 LVGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPI-Y--EELAEKYKDAESDVVIAKMDATAND---VPP-FEVEGF 420 (462)
T ss_pred eeCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHH-H--HHHHHHhhcCCCcEEEEEEECCCCc---cCC-CCcccc
Confidence 44567777653 468999999999999999999653 3 446666665 7889988987654 333 899999
Q ss_pred cEEEEEeCCCCc-eEEEEeCCCChHHHHHHHHhh
Q 019378 139 PVVLVVDPITGQ-KMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 139 P~l~ii~p~tG~-~l~~~~G~~~~~~~l~~L~~~ 171 (342)
|+++++.. ++. ....+.|..+.+.++..|...
T Consensus 421 Pt~~~~~~-~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 421 PTIKFVPA-GKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred CEEEEEeC-CCCcCceEecCcCCHHHHHHHHHhc
Confidence 99999974 333 234677888888877655443
No 117
>PLN02412 probable glutathione peroxidase
Probab=96.95 E-value=0.0077 Score=52.35 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=60.2
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC--------Ch-hHHHH-HHh----CC--------
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD--------TS-EGKKV-CTY----YK-------- 134 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~--------s~-eg~~~-~~~----y~-------- 134 (342)
.+|++||+++.+||..|..-...+ ++--.++-..++.+++++.+ +. +..+. ++. |+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l--~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~ 105 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKEL--NVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN 105 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHH--HHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence 579999999999999998521111 11112222335777777643 21 11121 221 11
Q ss_pred ----------------------CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 135 ----------------------LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 135 ----------------------v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+...|+.+|||+ .|+++.++.|.++++++...|...++
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 223588899997 79999999999999988887777665
No 118
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.95 E-value=0.002 Score=49.23 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=42.8
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 338 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~ 338 (342)
..-|+||-|||.. .-....++++..|++-|...+ +.+...|.|....++.. .+..+.++||+++||.++.++
T Consensus 4 ~milRvrS~dG~~-Rie~~~~~t~~~L~~kI~~~l-~~~~~~~~L~~~~~~~~-~l~s~~~~tl~~lglkHGdml 75 (80)
T PF11543_consen 4 SMILRVRSKDGMK-RIEVSPSSTLSDLKEKISEQL-SIPDSSQSLSKDRNNKE-ELKSSDSKTLSSLGLKHGDML 75 (80)
T ss_dssp --EEEEE-SSEEE-EEEE-TTSBHHHHHHHHHHHS----TTT---BSSGGGGG-CSSS-TT-CCCCT---TT-EE
T ss_pred cEEEEEECCCCCE-EEEcCCcccHHHHHHHHHHHc-CCCCcceEEEecCCCCc-ccccCCcCCHHHcCCCCccEE
Confidence 4579999999973 235789999999999999886 44566899987755543 343467899999999965554
No 119
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.91 E-value=0.0058 Score=52.08 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=21.4
Q ss_pred EEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378 140 VVLVVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
+.+|||+ .|++++++.|.++++++..
T Consensus 125 ttflId~-~G~i~~~~~G~~~~~~l~~ 150 (152)
T cd00340 125 TKFLVDR-DGEVVKRFAPTTDPEELEK 150 (152)
T ss_pred EEEEECC-CCcEEEEECCCCCHHHHHh
Confidence 6888996 7999999999888876643
No 120
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=96.84 E-value=0.0064 Score=44.74 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=56.0
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
.+|.||.++|+.+..++..+++|..|-+-+.... |.+....+|+.+ .+. + +.+.||.+.|+. +++|.+.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~q~L~~~--g~~--L--~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEV-GIPVEQQRLIYS--GRV--L--KDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEEe
Confidence 3788999999999999999999999999998763 556667778743 442 4 457899999998 57777765
No 121
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.83 E-value=0.01 Score=45.19 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=57.7
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
..|-|+.++|+.+...+..++||.+|.+-+.... +.+....+|...|..+. | +.+.||.+.|+. +++|.+.+
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~-~i~~~~qrL~~~~~G~~--L--~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKI-GVPAFQQRLAHLDSREV--L--QDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHh-CCCHHHEEEEeccCCCC--C--CCCCCHHHcCCCCCCEEEEEE
Confidence 5789999999999999999999999999998764 66778888854555553 5 446799999998 56676654
No 122
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.83 E-value=0.0078 Score=50.47 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=53.7
Q ss_pred HcCCeEEEEEecC-CCcchhhhhhcccCCHHHHHH---H-hccEEEEEeecCChh-H------------------HHHHH
Q 019378 76 VQDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQT---I-STNFIFWQVYDDTSE-G------------------KKVCT 131 (342)
Q Consensus 76 ~~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~---i-~~~FV~w~~~~~s~e-g------------------~~~~~ 131 (342)
-.+|+++|++... ||..|..--. .+.++ . ..++.++.+..++.. . ..++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p------~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 99 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELP------YLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAK 99 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHH------HHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHH
T ss_pred hCCCeEEEEEEccCCCCcchhhhh------hHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHH
Confidence 5689999999999 9999987532 22332 2 233444444443322 2 23456
Q ss_pred hCCCC---------CCcEEEEEeCCCCceEEEEeCCCC
Q 019378 132 YYKLD---------SIPVVLVVDPITGQKMRSWCGMVQ 160 (342)
Q Consensus 132 ~y~v~---------~~P~l~ii~p~tG~~l~~~~G~~~ 160 (342)
.|++. .+|+++|||+ +|+++....|..+
T Consensus 100 ~~~~~~~~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 100 ALGVTIMEDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP 136 (146)
T ss_dssp HTTCEEECCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred HhCCccccccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence 78877 9999999996 7999999888655
No 123
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.77 E-value=0.011 Score=49.44 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=76.0
Q ss_pred chhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHH----HHHh-ccEEEEEe
Q 019378 45 DSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVS----QTIS-TNFIFWQV 119 (342)
Q Consensus 45 ~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~----~~i~-~~FV~w~~ 119 (342)
+.-.++|.+ +|-| ..-..++++-+ ......+|.|.++-.-. .++....-|. +-.. ..+.+..+
T Consensus 8 ~~l~~rl~~-~g~~--~~~~~~~~~~~----~~~~~~vl~~~gdp~r~-----~E~~D~avvleELa~e~~~~~v~~akV 75 (132)
T PRK11509 8 DALWQRMLA-RGWT--PVSESRLDDWL----TQAPDGVVLLSSDPKRT-----PEVSDNPVMIGELLREFPDYTWQVAIA 75 (132)
T ss_pred HHHHHHHHH-cCCC--ccccccHHHHH----hCCCcEEEEeCCCCCcC-----CccccHHHHHHHHHHHhcCCceEEEEE
Confidence 445666767 3533 23445665555 33345677777753110 1222222222 2223 24778887
Q ss_pred ecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 120 YDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 120 ~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
|++. ...++..|+|.++|+++++. +|+.+.++.|..+.+++++.|..++++
T Consensus 76 DiD~--~~~LA~~fgV~siPTLl~Fk--dGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 76 DLEQ--SEAIGDRFGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred ECCC--CHHHHHHcCCccCCEEEEEE--CCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 7765 46799999999999999997 699999999999999999999999885
No 124
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=96.74 E-value=0.02 Score=44.28 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=59.6
Q ss_pred CCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEE
Q 019378 260 DRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS 338 (342)
Q Consensus 260 ~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~ 338 (342)
..+..++|.|+.++|+.+.-+...+++|+.|++-+... .+.+...++|+.. .+. + +.+.|+.++|+. +.+|.
T Consensus 7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~-~gi~~~~~rf~f~--G~~--L--~~~~T~~~l~m~d~d~I~ 79 (87)
T cd01763 7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQR-QGLSMNSVRFLFD--GQR--I--RDNQTPDDLGMEDGDEIE 79 (87)
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHH-hCCCccceEEEEC--CeE--C--CCCCCHHHcCCCCCCEEE
Confidence 34678999999999999999999999999999987765 4667778888765 442 4 568999999998 56665
Q ss_pred EE
Q 019378 339 VT 340 (342)
Q Consensus 339 v~ 340 (342)
|.
T Consensus 80 v~ 81 (87)
T cd01763 80 VM 81 (87)
T ss_pred EE
Confidence 43
No 125
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.73 E-value=0.0069 Score=52.01 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecCChhH----------------
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEG---------------- 126 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~s~eg---------------- 126 (342)
.-.+......=+||.+.+||...||.+|+.| |+.=.+|-+.|.++ |-+.=++.+..+.
T Consensus 21 ~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~F---TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~i 97 (157)
T KOG2501|consen 21 DGTEVLASEALQGKVVGLYFSAHWCPPCRDF---TPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAI 97 (157)
T ss_pred CCccchHhHhhCCcEEEEEEEEEECCchhhC---CchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEe
Confidence 3344445555678999999999999999999 44445566666666 5555455544322
Q ss_pred -------HHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 127 -------KKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 127 -------~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
..++..|.|.+.|.+.+|.| +|..|
T Consensus 98 Pf~d~~~~~l~~ky~v~~iP~l~i~~~-dG~~v 129 (157)
T KOG2501|consen 98 PFGDDLIQKLSEKYEVKGIPALVILKP-DGTVV 129 (157)
T ss_pred cCCCHHHHHHHHhcccCcCceeEEecC-CCCEe
Confidence 23567999999999999998 67654
No 126
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=96.67 E-value=0.011 Score=44.09 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=56.6
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
+|-||.++|+.+.-....++||.+|-+-+... .|.+....+|+.+ .+. + +.+.||.+.|+. +++|++.+
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~-~gi~~~~q~L~~~--G~~--L--~d~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEH-LNVPEEQQRLLFK--GKA--L--ADDKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCCHHHeEEEEC--CEE--C--CCCCCHHHCCCCCCCEEEEEE
Confidence 68899999999999999999999999999876 4677788899854 543 5 447999999998 57776654
No 127
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.63 E-value=0.021 Score=50.61 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=63.2
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEE------EEeecCChh--HH-----------------
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIF------WQVYDDTSE--GK----------------- 127 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~------w~~~~~s~e--g~----------------- 127 (342)
.+.-.||..||++..+||.+|.. ..|.+..+=..+|.+ .+++.++.. ..
T Consensus 54 ~~~l~GKV~lvn~~Aswc~~c~~------e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~ 127 (184)
T TIGR01626 54 SAELAGKVRVVHHIAGRTSAKEX------NASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWS 127 (184)
T ss_pred HHHcCCCEEEEEEEecCCChhhc------cchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcc
Confidence 34445999999999999999987 455555554456777 666665421 11
Q ss_pred --------HHHHhCCCCCCcEE-EEEeCCCCceEEEEeCCCChHHHHH
Q 019378 128 --------KVCTYYKLDSIPVV-LVVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 128 --------~~~~~y~v~~~P~l-~ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
.++..|++..+|.. +|||+ .|.++.+..|.++.+++-.
T Consensus 128 ~vllD~~g~v~~~~gv~~~P~T~fVIDk-~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 128 QVVLDDKGAVKNAWQLNSEDSAIIVLDK-TGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred eEEECCcchHHHhcCCCCCCceEEEECC-CCcEEEEEeCCCCHHHHHH
Confidence 13457788899877 89996 7999999999988877644
No 128
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.62 E-value=0.023 Score=48.20 Aligned_cols=92 Identities=9% Similarity=0.157 Sum_probs=51.5
Q ss_pred HcCCeEEEEEecC-CCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------HHHHHhCCC
Q 019378 76 VQDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------KKVCTYYKL 135 (342)
Q Consensus 76 ~~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------~~~~~~y~v 135 (342)
-.+|++||+|... +|..|......+ +....++-++++.++.+..++.+. ..+++.|++
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l--~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 105 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGL--RDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGV 105 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCC
Confidence 3567888888865 566676432211 111222223345555555544332 234456665
Q ss_pred CCC------------cEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 136 DSI------------PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 136 ~~~------------P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
... |+.+|||+ .|.++..+.|+...+. ++.+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~-~~~~~~~ 151 (154)
T PRK09437 106 WGEKKFMGKTYDGIHRISFLIDA-DGKIEHVFDKFKTSNH-HDVVLDY 151 (154)
T ss_pred CcccccccccccCcceEEEEECC-CCEEEEEEcCCCcchh-HHHHHHH
Confidence 332 77889997 6899999998654443 4444433
No 129
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=96.59 E-value=0.023 Score=42.56 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=56.5
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
.+|.|+-..|+.+...+..++||.+|.+-+.... +++...-+|+ |..+. + +.+.||++.|+. +++|++-+
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~-~~~~~~qrLi--~~Gk~--L--~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT-GTRPEKIVLK--KWYTI--F--KDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCChHHEEEE--eCCcC--C--CCCCCHHHcCCCCCCEEEEEe
Confidence 5788999999999999999999999999998764 6777778887 44553 4 457899999998 56677654
No 130
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.57 E-value=0.032 Score=47.44 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=28.9
Q ss_pred CCCcE----EEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 136 DSIPV----VLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 136 ~~~P~----l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
..+|. .+|||+ .|.++.++.|.++++++...|...
T Consensus 114 ~~~p~~~~~tflID~-~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 114 KKEPRWNFWKYLVNP-EGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCCccEEEEEcC-CCcEEEEECCCCCHHHHHHHHHHh
Confidence 35787 899997 799999999999999887777653
No 131
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.50 E-value=0.019 Score=50.02 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=59.7
Q ss_pred HHHHHcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH------------------------
Q 019378 72 DAASVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG------------------------ 126 (342)
Q Consensus 72 ~~Ak~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg------------------------ 126 (342)
..+.-.+|+++|+|+ ..||..|..-...+ +....++-+.++.++.++.+..+.
T Consensus 23 ~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 100 (173)
T cd03015 23 SLSDYKGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLAD 100 (173)
T ss_pred ehHHhCCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEEC
Confidence 334446899999999 68899998753322 112222333466667666655421
Q ss_pred --HHHHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHh
Q 019378 127 --KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 170 (342)
Q Consensus 127 --~~~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~ 170 (342)
..+++.|++. ..|+.+|||+ .|.++..+.+.. +.++++..|..
T Consensus 101 ~~~~~~~~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 101 PKKKISRDYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred CchhHHHHhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 1234566664 5789999998 689888876543 34566665543
No 132
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.48 E-value=0.04 Score=48.96 Aligned_cols=90 Identities=14% Similarity=0.181 Sum_probs=60.9
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-----------------------HHHHHh
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-----------------------KKVCTY 132 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-----------------------~~~~~~ 132 (342)
.+||++|+|+ .++|+.|..=...+ ++...++-..++.+++++.++.+. ..+++.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 6899999999 88999988733221 223333444577888888777544 245677
Q ss_pred CCC----CCC--cEEEEEeCCCCceEEEEeCC----CChHHHHHHHH
Q 019378 133 YKL----DSI--PVVLVVDPITGQKMRSWCGM----VQPESLLEDLV 169 (342)
Q Consensus 133 y~v----~~~--P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~ 169 (342)
|++ ..+ |..+|||| .|.+...+... .+.++++..|.
T Consensus 108 ygv~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred cCCCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 777 345 99999998 68887665432 36777776663
No 133
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.47 E-value=0.025 Score=51.13 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=57.8
Q ss_pred HHcCCeEEEE-EecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCce
Q 019378 75 SVQDKWLLVN-LQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 151 (342)
Q Consensus 75 k~~~K~LlV~-l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~ 151 (342)
+...+++.|. |+++||..|..+. +.+..+.. .+..+..+|.+ +...++..|++.++|+++|.. .|..
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~--~~~~ 198 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEAN--ENPDLAEKYGVMSVPKIVINK--GVEE 198 (215)
T ss_pred HhcCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeCC--CCHHHHHHhCCccCCEEEEec--CCEE
Confidence 3456676665 8899999999875 23333333 34555555554 455688999999999999864 3542
Q ss_pred EEEEeCCCChHHHHHHHHh
Q 019378 152 MRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 152 l~~~~G~~~~~~~l~~L~~ 170 (342)
+.|..+.++|.+.|..
T Consensus 199 ---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 199 ---FVGAYPEEQFLEYILS 214 (215)
T ss_pred ---EECCCCHHHHHHHHHh
Confidence 7898888888877654
No 134
>PTZ00044 ubiquitin; Provisional
Probab=96.44 E-value=0.017 Score=43.13 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=56.4
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
+|-||.++|+.+.-++..++||..|-.-+... .+.+....+|+. -.+. + +.+.||.+.|+. +.+|.+.+
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~--~g~~--L--~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEK-EGIDVKQIRLIY--SGKQ--M--SDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCCHHHeEEEE--CCEE--c--cCCCcHHHcCCCCCCEEEEEE
Confidence 57899999999999999999999999999886 466777888884 3553 4 457889999998 56777654
No 135
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=96.40 E-value=0.015 Score=43.16 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=53.5
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 267 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 267 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
+.||+++|+.+.-.+..++||.+|-..+... .|.+....+|+.. .+. | +.+.||.++|+. +.+|.|
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~-~gi~~~~q~Li~~--G~~--L--~D~~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAA-EGVDPCCQRWFFS--GKL--L--TDKTRLQETKIQKDYVVQV 67 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHH-hCCCHHHeEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEE
Confidence 3589999999999999999999999999875 5677777888743 543 4 568999999998 566655
No 136
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=96.37 E-value=0.0045 Score=62.23 Aligned_cols=94 Identities=17% Similarity=0.264 Sum_probs=74.8
Q ss_pred HHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhHHH-
Q 019378 51 LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKK- 128 (342)
Q Consensus 51 l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg~~- 128 (342)
|..-|.|-. +.-.=++|.+.|+.++||+++-+--+.|.-|++|.+.-|.|++...++++|||...+|-.. ++--+
T Consensus 88 lqhaynpvd---wypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~ 164 (786)
T KOG2244|consen 88 LQHAYNPVD---WYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKL 164 (786)
T ss_pred hhhccCCcc---cCcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHH
Confidence 355555543 3345589999999999999999999999999999999999999999999999999876532 22222
Q ss_pred ----HHHhCCCCCCcEEEEEeCC
Q 019378 129 ----VCTYYKLDSIPVVLVVDPI 147 (342)
Q Consensus 129 ----~~~~y~v~~~P~l~ii~p~ 147 (342)
+...++-..+|.-+++.|.
T Consensus 165 YM~Fv~assg~GGWPmsV~LTPd 187 (786)
T KOG2244|consen 165 YMAFVVASSGGGGWPMSVFLTPD 187 (786)
T ss_pred HHHHHHhccCCCCCceeEEeCCC
Confidence 2345677889999999984
No 137
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.34 E-value=0.023 Score=42.62 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=47.1
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC-
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM- 158 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~- 158 (342)
|.|+++||.+|+.+. +.+.+++.+ .+.+..++ +.+ .+..|++.+.|+++| +|+.+ +.|.
T Consensus 3 i~~~a~~C~~C~~~~------~~~~~~~~e~~~~~~~~~v~--~~~---~a~~~~v~~vPti~i----~G~~~--~~G~~ 65 (76)
T TIGR00412 3 IQIYGTGCANCQMTE------KNVKKAVEELGIDAEFEKVT--DMN---EILEAGVTATPGVAV----DGELV--IMGKI 65 (76)
T ss_pred EEEECCCCcCHHHHH------HHHHHHHHHcCCCeEEEEeC--CHH---HHHHcCCCcCCEEEE----CCEEE--EEecc
Confidence 778899999999984 345555543 45665544 322 256799999999998 57766 7785
Q ss_pred CChHHHHHHH
Q 019378 159 VQPESLLEDL 168 (342)
Q Consensus 159 ~~~~~~l~~L 168 (342)
.+.+++.+.|
T Consensus 66 ~~~~~l~~~l 75 (76)
T TIGR00412 66 PSKEEIKEIL 75 (76)
T ss_pred CCHHHHHHHh
Confidence 4446665443
No 138
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.31 E-value=0.023 Score=50.32 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=58.9
Q ss_pred HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-----------------------HHHHH
Q 019378 76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-----------------------KKVCT 131 (342)
Q Consensus 76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-----------------------~~~~~ 131 (342)
-.|||++|+|+ ..||+.|..-...+ ++...++-+.++.+++++.++.+. ..+++
T Consensus 29 ~~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~ 106 (187)
T TIGR03137 29 VKGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTR 106 (187)
T ss_pred HCCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHH
Confidence 46899999999 89999998743221 112233334577777777766432 23456
Q ss_pred hCCCC------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHH
Q 019378 132 YYKLD------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDL 168 (342)
Q Consensus 132 ~y~v~------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L 168 (342)
.|++. ..|+.+|||+ +|.+...+.+. .+.++++..|
T Consensus 107 ~~gv~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l 152 (187)
T TIGR03137 107 NFGVLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKI 152 (187)
T ss_pred HhCCcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 77764 3699999997 68888776442 2566676655
No 139
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=96.27 E-value=0.026 Score=41.93 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=55.1
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
+|-||.++|+.+.-.+..++||..|..-+.... +.+....+|+. ..+. + +.+.||.+.|+. +++|.+.+
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-g~~~~~q~L~~--~g~~--L--~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHh-CCCHHHeEEEE--CCEE--C--CCCCcHHHcCCCCCCEEEEEE
Confidence 588999999999999999999999999998863 66666778874 4543 4 457899999998 56676654
No 140
>PRK15000 peroxidase; Provisional
Probab=96.24 E-value=0.033 Score=49.99 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=61.0
Q ss_pred cCCeEEEEEecC-CCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378 77 QDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV 129 (342)
Q Consensus 77 ~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~ 129 (342)
.+||++|+|+.. +|+.|..=.... +....+|-+.++.+++++.++.+.. .+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 689999999994 789888743221 2223334445788888888865432 23
Q ss_pred HHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378 130 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV 169 (342)
Q Consensus 130 ~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~ 169 (342)
++.|++. .+|..+|||| .|.+...+.|.. +.++++..|.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~ 159 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVD 159 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 4567775 6899999998 688887776643 5667766554
No 141
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=96.11 E-value=0.041 Score=41.64 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=53.6
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
.+|.||..+|+...-.+..++||.+|..-+.... +.+....+|+ |..+. +. | + ||+++|+. +++|.+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-~~~~~~qrL~--~~Gk~--L~-d-~-~L~~~gi~~~~~i~l~ 70 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRL-KVPKERLALL--HRETR--LS-S-G-KLQDLGLGDGSKLTLV 70 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHh-CCChHHEEEE--ECCcC--CC-C-C-cHHHcCCCCCCEEEEE
Confidence 4788999999999999999999999999998764 6666777786 44553 53 3 4 89999998 5666553
No 142
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=96.10 E-value=0.029 Score=41.33 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=54.5
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 267 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 267 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
|-||.++|+.+.-....+++|..|-..+... .|.+.....|+.+ .+. | +.+.||.++|+. +++|.++
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~q~Li~~--G~~--L--~d~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKR-QGVPPDQLRVIFA--GKE--L--RNTTTIQECDLGQQSILHAV 68 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHH-HCCCHHHeEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 4589999999999999999999999999886 4667778888754 543 4 557999999998 5777664
No 143
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.04 E-value=0.037 Score=44.63 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=50.4
Q ss_pred cCCeEEEEEecC-CCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhH-------------------HHHHHh
Q 019378 77 QDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG-------------------KKVCTY 132 (342)
Q Consensus 77 ~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg-------------------~~~~~~ 132 (342)
.+||++|+|... +|..|..-.. .+.++. ..++-++.+..++.+. ..++..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~------~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 97 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELP------ELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKA 97 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHH------HHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHH
T ss_pred CCCcEEEEEeCccCccccccchh------HHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHH
Confidence 679999999999 9999987643 333333 2367777778877653 234567
Q ss_pred CCCC------CCcEEEEEeCCCCceEE
Q 019378 133 YKLD------SIPVVLVVDPITGQKMR 153 (342)
Q Consensus 133 y~v~------~~P~l~ii~p~tG~~l~ 153 (342)
|++. .+|.++|||+ .|.+++
T Consensus 98 ~~~~~~~~~~~~p~~~lid~-~g~I~~ 123 (124)
T PF00578_consen 98 FGIEDEKDTLALPAVFLIDP-DGKIRY 123 (124)
T ss_dssp TTCEETTTSEESEEEEEEET-TSBEEE
T ss_pred cCCccccCCceEeEEEEECC-CCEEEe
Confidence 7776 8999999997 677654
No 144
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=95.87 E-value=0.046 Score=40.79 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=54.7
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 267 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 267 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
|-||.++|+.+.-....++||..|.+-+... .+.+...+.|+.+ .+. | ..+.||.+.|+. +++|.+.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~~--G~~--L--~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQR-ERVQADQFWLSFE--GRP--M--EDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHH-hCCCHHHeEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEEE
Confidence 4689999999999999999999999999875 4777788999854 443 5 346999999998 56676554
No 145
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=95.83 E-value=0.025 Score=45.77 Aligned_cols=64 Identities=19% Similarity=0.274 Sum_probs=48.6
Q ss_pred CeeEEEEECCCCceE-EEEeCCCCchHHHHHHHHhhcC-C-----CCCcCeEEEecCCCCccccCCCcCCChhhcCC
Q 019378 263 LLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLE-G-----SEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 332 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~-~rrF~~~~~l~~l~~fv~~~~~-~-----~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL 332 (342)
..+.|+|||+||+-| -.+|..++||..|-.-|....+ + +....-+|+.. .+. | ..++||+++++
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys--GKi--L--eD~~TL~d~~~ 73 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA--GKI--L--ENSKTVGECRS 73 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC--Cee--c--CCCCcHHHhCC
Confidence 468899999999743 4789999999999999987643 2 33455677764 443 4 56899999993
No 146
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=95.74 E-value=0.07 Score=39.82 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=52.4
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCC--CCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~--~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
+|.||.++|+.+.-....++||..|...+.... +. +.....|+. .++. | +.+.||.++|+.+ ++|++
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~-~i~~~~~~q~L~~--~G~~--L--~d~~~L~~~~i~~~~~i~~ 71 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEK-GCDYPPEQQKLIY--SGKI--L--KDDTTLEEYKIDEKDFVVV 71 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhh-CCCCChhHeEEEE--CCEE--c--cCCCCHHHcCCCCCCEEEE
Confidence 588999999999999999999999999998753 54 566677764 3553 5 4468999999984 55544
No 147
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.70 E-value=0.11 Score=44.92 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=53.8
Q ss_pred HHHHcCCeEEEEEecCC-CcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh---------------------HHH
Q 019378 73 AASVQDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE---------------------GKK 128 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~-~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e---------------------g~~ 128 (342)
.+.-.+|+++|+++..| |..|..--. .+.++.+ .++.+++++.+++. +..
T Consensus 39 l~~~~Gk~vvl~f~~s~~cp~C~~e~~------~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~ 112 (167)
T PRK00522 39 LADFAGKRKVLNIFPSIDTGVCATSVR------KFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHS 112 (167)
T ss_pred hHHhCCCEEEEEEEcCCCCCccHHHHH------HHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccH
Confidence 33346899999999998 888887422 2222222 25666666665532 224
Q ss_pred HHHhCCCCCCc---------EEEEEeCCCCceEEEEeCC-----CChHHHHHHH
Q 019378 129 VCTYYKLDSIP---------VVLVVDPITGQKMRSWCGM-----VQPESLLEDL 168 (342)
Q Consensus 129 ~~~~y~v~~~P---------~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L 168 (342)
++..|++...| +.+|||+ +|.++..+.+. .+.++++..|
T Consensus 113 ~~~~~gv~~~~~~~~g~~~r~tfvId~-~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 113 FGKAYGVAIAEGPLKGLLARAVFVLDE-NNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred HHHHhCCeecccccCCceeeEEEEECC-CCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 45666665555 8888886 68877776442 2445555443
No 148
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=95.69 E-value=0.085 Score=42.28 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=59.6
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
+.-+|-||..+|+.+.-....++||..|-.-|... .|.+....+|+.+ .+. | +.+.||++.|+. +++|.+.+
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRL-EGIPVAQQHLIWN--NME--L--EDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCChHHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEEE
Confidence 46899999999999999999999999999999875 5777788999864 443 4 557899999998 67787764
No 149
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=95.67 E-value=0.078 Score=39.16 Aligned_cols=69 Identities=10% Similarity=0.183 Sum_probs=53.9
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
++|-||.++|+ ..-....++||..|..-+.... +.+...++|+. ..+. | +.+.||.++|+. +++|.+.+
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~-~i~~~~~~Li~--~Gk~--L--~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKF-KANQEQLVLIF--AGKI--L--KDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHh-CCCHHHEEEEE--CCeE--c--CCCCcHHHcCCCCCCEEEEEE
Confidence 36889999996 4778889999999999998764 66677788864 4553 5 446899999998 67787765
No 150
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=95.57 E-value=0.079 Score=38.77 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=53.2
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 340 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~ 340 (342)
++|.||.. |+....++..++||..|.+-+... .+.+....+|... .+. + +.+.||.++|+.+ .+|.|.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~~--g~~--l--~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPV-TGVEPRDQKLIFK--GKE--R--DDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHh-hCCChHHeEEeeC--Ccc--c--CccCcHHHcCCCCCCEEEEe
Confidence 47889996 888899999999999999999875 4677778888754 332 4 3478999999984 556553
No 151
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.56 E-value=0.17 Score=39.29 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=51.9
Q ss_pred HHHcCCe-EEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 74 ASVQDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 74 Ak~~~K~-LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
++.-.++ =+..|++++|.+|....+-+ +++.. .+.++-+..+|++ +...++..|++.++|+++| +|+.+
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~---~~l~~-~~~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi----dG~~~ 76 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQAL---NLMAV-LNPNIEHEMIDGA--LFQDEVEERGIMSVPAIFL----NGELF 76 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHH---HHHHH-HCCCceEEEEEhH--hCHHHHHHcCCccCCEEEE----CCEEE
Confidence 3344455 45566678999999874322 33332 2234666655654 3456889999999999964 47766
Q ss_pred EEEeCCCChHHHHH
Q 019378 153 RSWCGMVQPESLLE 166 (342)
Q Consensus 153 ~~~~G~~~~~~~l~ 166 (342)
. .|..+.++++.
T Consensus 77 ~--~G~~~~~e~~~ 88 (89)
T cd03026 77 G--FGRMTLEEILA 88 (89)
T ss_pred E--eCCCCHHHHhh
Confidence 4 48777777653
No 152
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.56 E-value=0.11 Score=46.67 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=56.7
Q ss_pred HcCCeEEEE-EecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HHH
Q 019378 76 VQDKWLLVN-LQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKV 129 (342)
Q Consensus 76 ~~~K~LlV~-l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~~ 129 (342)
-.+||++|+ +..++|+.|..=...+ .....++-+.++.+++++.++.+. ..+
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l--~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~i 102 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAF--SRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKEL 102 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHH
Confidence 368888775 6788999987532211 111122223466666766665321 234
Q ss_pred HHhCCCC------CCcEEEEEeCCCCceEEEE----eCCCChHHHHHHHHhh
Q 019378 130 CTYYKLD------SIPVVLVVDPITGQKMRSW----CGMVQPESLLEDLVPF 171 (342)
Q Consensus 130 ~~~y~v~------~~P~l~ii~p~tG~~l~~~----~G~~~~~~~l~~L~~~ 171 (342)
++.|++. .+|.++|||| .|.+.... .+..+.++++..|...
T Consensus 103 a~~ygv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 103 AREYNLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HHHcCCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 5677773 4899999998 68776555 2335778887766544
No 153
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=95.54 E-value=0.086 Score=38.82 Aligned_cols=68 Identities=26% Similarity=0.335 Sum_probs=52.5
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
++|.++..+|+.+.-+-..+++++.|++...... +.+. ..+.|.-. +.. + +.+.|++++|+. +..|.|
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~-~i~~~~~~~l~fd--G~~--L--~~~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKK-GIPPEESIRLIFD--GKR--L--DPNDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHH-TTTT-TTEEEEET--TEE--E---TTSCHHHHT-STTEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhh-CCCccceEEEEEC--CEE--c--CCCCCHHHCCCCCCCEEEE
Confidence 4789999999999999999999999999876653 5556 78888764 432 4 678999999998 555554
No 154
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=95.53 E-value=0.064 Score=39.09 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=51.8
Q ss_pred ECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 270 RLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 270 RlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
|.++|+.+.-.+..+++|.+|-.-|.... +.+.....|+.+ .+. + +.+.||.+.|+.+ ++|.+
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~~~~~~~~L~~~--G~~--L--~d~~tL~~~~i~~~~~I~l 64 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEET-GIPPEQQRLIYN--GKE--L--DDDKTLSDYGIKDGSTIHL 64 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHH-TSTGGGEEEEET--TEE--E--STTSBTGGGTTSTTEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhccccc-ccccccceeeee--eec--c--cCcCcHHHcCCCCCCEEEE
Confidence 56899999999999999999999998865 567888999875 443 4 7799999999995 55554
No 155
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.084 Score=52.01 Aligned_cols=96 Identities=22% Similarity=0.220 Sum_probs=73.1
Q ss_pred HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCce
Q 019378 72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 151 (342)
Q Consensus 72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~ 151 (342)
......++..+|.+.++||..|+.+-.... .+...++. +...+.++-.+-..+++.|++..||++.+..| |..
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~~~~---~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~--~~~ 113 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAPTYK---KLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRP--GKK 113 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhchHHH---HHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcC--CCc
Confidence 345577899999999999999999964333 56566666 55556888888899999999999999999997 444
Q ss_pred EEEEeCCCChHHHHHHHHhhhhc
Q 019378 152 MRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 152 l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.....|..+.+.+.+.+...++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 114 PIDYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred eeeccCcccHHHHHHHHHHhhcc
Confidence 44566777777777766655553
No 156
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=95.37 E-value=0.08 Score=39.23 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=53.1
Q ss_pred EEEECC-CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 267 VGVRLP-DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 267 i~iRlP-~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
|-|+++ +|+.+.-....+++|..|-..+... .|.+....+|+.+ .+. | .|...||+++|+.+ .+|++
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~-~gip~~~q~Li~~--Gk~--L-~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAE-SGIPASQQQLIYN--GRE--L-VDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHH-hCCCHHHeEEEEC--CeE--c-cCCcccHHHcCCCCCCEEEE
Confidence 457999 9999999999999999999999875 5777778888865 543 5 35568999999985 44554
No 157
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=95.35 E-value=0.1 Score=42.48 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=47.8
Q ss_pred eeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCC------CCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378 264 LCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGS------EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 333 (342)
Q Consensus 264 ~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~------~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 333 (342)
.+.|+|||.||+ +..-+|..+.||.+|-+.|....+.. .....+|+.. +|. | +.+.||.++++.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~--Gri--L--~d~~tL~~~~~~ 72 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYA--GRI--L--EDNKTLSDCRLP 72 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEET--TEE--E---SSSBTGGGT--
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeC--Cee--c--CCcCcHHHhCCC
Confidence 478999999999 99999999999999999999876432 1345778775 443 4 578999999886
No 158
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=95.31 E-value=0.13 Score=45.94 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=56.0
Q ss_pred HcCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HH
Q 019378 76 VQDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KK 128 (342)
Q Consensus 76 ~~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~ 128 (342)
-.+||++|+|+. ++|+.|..-... | +....++-..++-+++++.++... ..
T Consensus 34 ~~Gk~~lL~F~p~~~~~~C~~e~~~-l-~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 34 YKGKWVVLFFYPLDFTFVCPTEIIQ-F-SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred HCCCEEEEEEEcCCCCCcCHHHHHH-H-HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 358999999995 567777753321 1 222333334577777777765432 23
Q ss_pred HHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHH
Q 019378 129 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDL 168 (342)
Q Consensus 129 ~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L 168 (342)
+++.|++. .+|..+|||| .|.+...+.+.. +.++++..|
T Consensus 112 ia~~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~~~~~~r~~~e~l~~l 160 (199)
T PTZ00253 112 IARSYGVLEEEQGVAYRGLFIIDP-KGMLRQITVNDMPVGRNVEEVLRLL 160 (199)
T ss_pred HHHHcCCcccCCCceEEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHH
Confidence 56777773 4799999998 688877666543 344555444
No 159
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.057 Score=54.59 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=70.8
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
-.++|++.+ ..+.++||-|+.+||.-|+.+-...=.-.....-.....-+-++|.+ +...+|+.|.|..||++-
T Consensus 31 t~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--~~~~~~~~y~v~gyPTlk 104 (493)
T KOG0190|consen 31 TKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--EESDLASKYEVRGYPTLK 104 (493)
T ss_pred ecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--hhhhhHhhhcCCCCCeEE
Confidence 356777666 46799999999999999999854432222221111124555555554 448999999999999999
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
|.- +|.......|.-+++.++..|..
T Consensus 105 iFr--nG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 105 IFR--NGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred EEe--cCCcceeccCcccHHHHHHHHHh
Confidence 985 68766677888888888776653
No 160
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=95.15 E-value=0.19 Score=41.43 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=47.8
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-H-------------------HHHHhCCC
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-K-------------------KVCTYYKL 135 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-~-------------------~~~~~y~v 135 (342)
.+|+++|++. +.+|..|..-...+ +....++=..++.++.+..++.+. . .++..|++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAF--RDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 6888888888 67898887754332 111222213456666666655432 1 23445555
Q ss_pred CCC---------cEEEEEeCCCCceEEEEeCCC
Q 019378 136 DSI---------PVVLVVDPITGQKMRSWCGMV 159 (342)
Q Consensus 136 ~~~---------P~l~ii~p~tG~~l~~~~G~~ 159 (342)
... |+++|||+ +|.++.++.|..
T Consensus 99 ~~~~~~~~~~~~p~~~lid~-~g~i~~~~~~~~ 130 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDP-DGKIRYVEVEPL 130 (140)
T ss_pred ccccccccCceeEEEEEECC-CCcEEEEEecCC
Confidence 444 47888886 688888877743
No 161
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=94.88 E-value=0.14 Score=42.59 Aligned_cols=75 Identities=11% Similarity=0.063 Sum_probs=48.0
Q ss_pred cCCeEEEEEecCC-CcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhH---------------------HHHHHh
Q 019378 77 QDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCTY 132 (342)
Q Consensus 77 ~~K~LlV~l~~~~-~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg---------------------~~~~~~ 132 (342)
.+|+++|+|+..+ |..|..-. +.+.++.. .++.++.++.++.+. ..++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~------~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 98 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQT------KRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA 98 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHH------HHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence 5899999999988 58887643 23333332 267788887765431 234445
Q ss_pred CCCCC------CcEEEEEeCCCCceEEEEeCC
Q 019378 133 YKLDS------IPVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 133 y~v~~------~P~l~ii~p~tG~~l~~~~G~ 158 (342)
|++.. .|+.+|||+ .|.++..+.|.
T Consensus 99 ~gv~~~~~~~~~~~~~iid~-~G~I~~~~~~~ 129 (143)
T cd03014 99 YGVLIKDLGLLARAVFVIDE-NGKVIYVELVP 129 (143)
T ss_pred hCCeeccCCccceEEEEEcC-CCeEEEEEECC
Confidence 55532 578888886 67777776653
No 162
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.76 E-value=0.38 Score=42.27 Aligned_cols=38 Identities=18% Similarity=0.506 Sum_probs=29.8
Q ss_pred CCCCcE---EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 135 LDSIPV---VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 135 v~~~P~---l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+..+|+ .+|||+ .|.++.++.|.++++.+...|...+.
T Consensus 142 ~~~iP~~~~tflID~-~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 142 ARQIPWNFAKFLIDG-QGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CcccCcceEEEEECC-CCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 446784 589996 69999999999998888777766553
No 163
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=94.76 E-value=0.15 Score=42.22 Aligned_cols=22 Identities=18% Similarity=-0.007 Sum_probs=18.5
Q ss_pred HcCCeEEEEEecCCCcc-hhhhh
Q 019378 76 VQDKWLLVNLQSTKEFS-SHMLN 97 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~-~~~f~ 97 (342)
-.+||++|+|...||.. |....
T Consensus 20 ~~gk~~vl~f~~~~C~~~C~~~l 42 (142)
T cd02968 20 LKGKPVLVYFGYTHCPDVCPTTL 42 (142)
T ss_pred hCCCEEEEEEEcCCCcccCHHHH
Confidence 36899999999999997 97643
No 164
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=94.38 E-value=0.44 Score=42.18 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=47.7
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecC--------C-hhHHHHHH-hCCCC
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDD--------T-SEGKKVCT-YYKLD 136 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~--------s-~eg~~~~~-~y~v~ 136 (342)
+..+.=.||++||++..++|..|..+. .+.++.+ ..|.++++..+ + .+...+++ .|++
T Consensus 18 v~Ls~~~GKvvLVvf~AS~C~~~~q~~-------~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~- 89 (183)
T PRK10606 18 TTLEKYAGNVLLIVNVASKCGLTPQYE-------QLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV- 89 (183)
T ss_pred EeHHHhCCCEEEEEEEeCCCCCcHHHH-------HHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-
Confidence 344555689999999999999987653 3444433 46888887653 2 34556775 5766
Q ss_pred CCcEEEEEeCCCCc
Q 019378 137 SIPVVLVVDPITGQ 150 (342)
Q Consensus 137 ~~P~l~ii~p~tG~ 150 (342)
.||.+.=++. +|+
T Consensus 90 ~Fpv~~k~dv-nG~ 102 (183)
T PRK10606 90 TFPMFSKIEV-NGE 102 (183)
T ss_pred CceeEEEEcc-CCC
Confidence 5787776774 554
No 165
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.15 E-value=0.13 Score=48.60 Aligned_cols=92 Identities=18% Similarity=0.332 Sum_probs=66.4
Q ss_pred CCeEEEEEecCCCcchhhhhhcccCC--HHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE-E
Q 019378 78 DKWLLVNLQSTKEFSSHMLNRDTWAN--EAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR-S 154 (342)
Q Consensus 78 ~K~LlV~l~~~~~~~~~~f~rdvl~~--~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~-~ 154 (342)
+..++|+|+.+||.-|+++.. ++.. ..+++-.=++=|+|+ .++..---.+++.|.+..||++=|+- +|+.+. -
T Consensus 13 ~elvfv~FyAdWCrFSq~L~p-iF~EAa~~~~~e~P~~kvvwg-~VDcd~e~~ia~ky~I~KyPTlKvfr--nG~~~~rE 88 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKP-IFEEAAAKFKQEFPEGKVVWG-KVDCDKEDDIADKYHINKYPTLKVFR--NGEMMKRE 88 (375)
T ss_pred ceEEeeeeehhhchHHHHHhH-HHHHHHHHHHHhCCCcceEEE-EcccchhhHHhhhhccccCceeeeee--ccchhhhh
Confidence 678999999999999998853 3322 223333333667776 44444445689999999999999985 799886 5
Q ss_pred EeCCCChHHHHHHHHhhhh
Q 019378 155 WCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 155 ~~G~~~~~~~l~~L~~~l~ 173 (342)
..|.-+.+.|++.+..-++
T Consensus 89 YRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 89 YRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred hccchhHHHHHHHHHHHhc
Confidence 7888888888876655444
No 166
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=94.14 E-value=0.35 Score=45.29 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=58.7
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HHH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 129 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~~ 129 (342)
.+||++++++ .++|+.|..=.... ++...++-..++.++++..++... ..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 6789999999 68999998732221 122233334466677777666421 345
Q ss_pred HHhCCCC-----CCcEEEEEeCCCCceEEEEeC----CCChHHHHHHHH
Q 019378 130 CTYYKLD-----SIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLV 169 (342)
Q Consensus 130 ~~~y~v~-----~~P~l~ii~p~tG~~l~~~~G----~~~~~~~l~~L~ 169 (342)
++.|++. ..|.++|||| .|.+...+.. .-+.++++..|.
T Consensus 175 akayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HHHcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 6778874 5899999998 6888766532 236777776554
No 167
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.01 E-value=0.57 Score=38.79 Aligned_cols=48 Identities=8% Similarity=-0.075 Sum_probs=28.9
Q ss_pred CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH
Q 019378 78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK 127 (342)
Q Consensus 78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~ 127 (342)
++.||+++.+.||..|..--..+ +....++-..++.++.+..++.+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l--~~~~~~~~~~~v~vv~V~~~~~~~~ 71 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRAL--SKLLPELDALGVELVAVGPESPEKL 71 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHH--HHHHHHHHhcCeEEEEEeCCCHHHH
Confidence 34555555689999998764332 1112222235788888888776543
No 168
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=93.99 E-value=0.48 Score=39.51 Aligned_cols=83 Identities=11% Similarity=0.060 Sum_probs=44.0
Q ss_pred HHHHcC-CeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH---------------------HHH
Q 019378 73 AASVQD-KWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG---------------------KKV 129 (342)
Q Consensus 73 ~Ak~~~-K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg---------------------~~~ 129 (342)
.+.-.+ |+++|++. ..||..|..-...+ .....++-+.++.++.++.++.+. ..+
T Consensus 22 l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 99 (149)
T cd03018 22 LSEFRGRKPVVLVFFPLAFTPVCTKELCAL--RDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEV 99 (149)
T ss_pred HHHHcCCCeEEEEEeCCCCCccHHHHHHHH--HHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHH
Confidence 333345 88877776 78888887432211 011111112344455544444322 334
Q ss_pred HHhCCCCC----C--cEEEEEeCCCCceEEEEeCC
Q 019378 130 CTYYKLDS----I--PVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 130 ~~~y~v~~----~--P~l~ii~p~tG~~l~~~~G~ 158 (342)
+..|++.. + |+.+|||+ +|+++..+.|.
T Consensus 100 ~~~~g~~~~~~~~~~~~~~lid~-~G~v~~~~~~~ 133 (149)
T cd03018 100 AKAYGVFDEDLGVAERAVFVIDR-DGIIRYAWVSD 133 (149)
T ss_pred HHHhCCccccCCCccceEEEECC-CCEEEEEEecC
Confidence 45566542 2 37788886 67877777764
No 169
>PRK13191 putative peroxiredoxin; Provisional
Probab=93.92 E-value=0.41 Score=43.40 Aligned_cols=91 Identities=10% Similarity=0.077 Sum_probs=57.3
Q ss_pred cCCeEEE-EEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------------HHH
Q 019378 77 QDKWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------------KVC 130 (342)
Q Consensus 77 ~~K~LlV-~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------------~~~ 130 (342)
.+||++| ++-.++|+.|..-...+ ++...+|-+.++.+++++.++.... .++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l--~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSF--AKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 5788776 55678898888743221 2223344445777777777765532 345
Q ss_pred HhCCCC-------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHh
Q 019378 131 TYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 170 (342)
Q Consensus 131 ~~y~v~-------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~ 170 (342)
+.|++. ..|.++|||| .|.+...+.+. -+.+++|..|..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred HHcCCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 567652 3799999998 68877665443 256777766643
No 170
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.87 E-value=0.15 Score=34.23 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=43.9
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHH-HHhCCCCCCcEEEEEeC
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKV-CTYYKLDSIPVVLVVDP 146 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~-~~~y~v~~~P~l~ii~p 146 (342)
|++++..+|..|..+.. ++... ...+.++.+..++.+....... ...+++..+|++.++++
T Consensus 1 l~~~~~~~c~~c~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYAPWCPFCQALRP-VLAEL---ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEECCCChhHHhhhh-HHHHH---HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeC
Confidence 46788889999999853 22221 4556788888888876554332 35789999999999986
No 171
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=93.84 E-value=0.41 Score=36.22 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=52.9
Q ss_pred EEEEECCCCce-EEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 266 RVGVRLPDGRR-MQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 266 ~i~iRlP~G~r-~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
+|-||.++|+. +.- ....++||..|-.-+... .|.+....+|+.. .+. + +.+.||.+.|+. +++|.+.+
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~-~gi~~~~QrLi~~--Gk~--L--~D~~tL~~y~i~~~~~i~l~~ 73 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQEL-FNVEPECQRLFYR--GKQ--M--EDGHTLFDYNVGLNDIIQLLV 73 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHH-hCCCHHHeEEEeC--CEE--C--CCCCCHHHcCCCCCCEEEEEE
Confidence 57899999986 344 356789999999999875 4677788899864 443 4 558999999999 57776654
No 172
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=93.83 E-value=0.27 Score=34.68 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=48.7
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCc
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA 335 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~ 335 (342)
+|.||.++ +....++..+.||..|..-+.... +.+.....|+.+ .+. + +.+.||.++|+.++
T Consensus 2 ~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~-~~~~~~~~L~~~--g~~--L--~d~~tL~~~~i~~~ 63 (64)
T smart00213 2 ELTVKTLD-GTITLEVKPSDTVSELKEKIAELT-GIPVEQQRLIYK--GKV--L--EDDRTLADYNIQDG 63 (64)
T ss_pred EEEEEECC-ceEEEEECCCCcHHHHHHHHHHHH-CCCHHHEEEEEC--CEE--C--CCCCCHHHcCCcCC
Confidence 68899999 578889999999999999998764 556666788754 432 4 34699999999754
No 173
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=93.78 E-value=0.44 Score=34.07 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=50.8
Q ss_pred EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 269 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 269 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
||..+|+.+...+..+.||..|-.-+.... +.+.....|+.+ .+. + +.+.||.++|+. ++.|.|.+
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~-~~~~~~~~l~~~--g~~--l--~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKE-GVPPEQQRLIYA--GKI--L--KDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CcC--C--CCcCCHHHCCCCCCCEEEEEE
Confidence 577789999999999999999999998864 556666777443 332 4 557899999998 46677765
No 174
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.77 E-value=0.27 Score=45.73 Aligned_cols=92 Identities=11% Similarity=0.162 Sum_probs=59.7
Q ss_pred HHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-----cEEEEEeec-C---------------------
Q 019378 70 AKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-----NFIFWQVYD-D--------------------- 122 (342)
Q Consensus 70 A~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-----~FV~w~~~~-~--------------------- 122 (342)
++.......|..++.|.+.+|..|+.|..+ +..+++. +++.+.+-. +
T Consensus 109 ~i~~g~~~ak~~I~vFtDp~CpyC~kl~~~------l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~ 182 (251)
T PRK11657 109 WILDGKADAPRIVYVFADPNCPYCKQFWQQ------ARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEY 182 (251)
T ss_pred CccccCCCCCeEEEEEECCCChhHHHHHHH------HHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHH
Confidence 455555677888999999999999999644 3333332 222222110 0
Q ss_pred ---------------Chh-------HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378 123 ---------------TSE-------GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 123 ---------------s~e-------g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~ 169 (342)
+.+ ..++++.+++...|++++.|. +| .+..+.|+.++++|.+.|.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~-~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 183 EASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK-DG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CC-CEEEecCCCCHHHHHHHhC
Confidence 011 122456788999999999985 45 3556889999998877653
No 175
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=93.60 E-value=0.3 Score=37.96 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=39.6
Q ss_pred eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCce-EEE
Q 019378 276 RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISV 339 (342)
Q Consensus 276 r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~-l~v 339 (342)
.+++.|.+.|||..|-..+...+. . ...-+|-.-|=...+.+-.+...|++||||..+. |++
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~-i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFN-I-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT---TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHhC-C-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 689999999999999999988653 2 5556775533222334335778999999999655 444
No 176
>PRK13189 peroxiredoxin; Provisional
Probab=93.52 E-value=0.32 Score=44.38 Aligned_cols=91 Identities=10% Similarity=0.066 Sum_probs=54.8
Q ss_pred cCCeEEE-EEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HHHH
Q 019378 77 QDKWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVC 130 (342)
Q Consensus 77 ~~K~LlV-~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~~~ 130 (342)
.+||++| ++-.++|+.|..--..+ +....+|-+.++.+++++.++... ..++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l--~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAF--QKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 5788776 45578999998632221 222233334566677776665432 2345
Q ss_pred HhCCCC-------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHh
Q 019378 131 TYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 170 (342)
Q Consensus 131 ~~y~v~-------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~ 170 (342)
+.|++. .+|.++|||| .|.+...+.+. .+.++++..|..
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred HHhCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 667753 5799999998 68876655432 346666665543
No 177
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.39 E-value=0.48 Score=43.50 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=57.8
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc----cEEEEEeecCChh---------------------
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDTSE--------------------- 125 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~----~FV~w~~~~~s~e--------------------- 125 (342)
+.....++|..++.|.+++|+.|+.+.. ++.++.+. .|+.|...-..++
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~------~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~ 173 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHE------QMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDA 173 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHH------HHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHH
Confidence 3334557788999999999999999964 35565543 2333443111111
Q ss_pred -----------------HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 126 -----------------GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 126 -----------------g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
..++++.+++...|++++- +|+. +.|+.+++.|...|..
T Consensus 174 ~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~---~G~~---~~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 174 MKGKDVSPASCDVDIADHYALGVQFGVQGTPAIVLS---NGTL---VPGYQGPKEMKAFLDE 229 (232)
T ss_pred HcCCCCCcccccchHHHhHHHHHHcCCccccEEEEc---CCeE---eeCCCCHHHHHHHHHH
Confidence 1234567899999999854 3654 4899999998776653
No 178
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.32 E-value=0.62 Score=40.09 Aligned_cols=89 Identities=18% Similarity=0.303 Sum_probs=53.6
Q ss_pred HHcCCe-EEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCC--CCcEEEEEeCCCCce
Q 019378 75 SVQDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQK 151 (342)
Q Consensus 75 k~~~K~-LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~--~~P~l~ii~p~tG~~ 151 (342)
...+++ ++++|...+......+...+ ..+..-.+++++|.-+|.+ ...+++..|++. .+|.++|+++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~~vi~~~~~~~~ 165 (184)
T PF13848_consen 91 FSSPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPALVIFDSNKGKY 165 (184)
T ss_dssp HSTSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSEEEEEETTTSEE
T ss_pred hcCCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCEEEEEECCCCcE
Confidence 344555 55566554444444443221 2333333556666666666 445578899886 899999999877664
Q ss_pred EEEEeCCCChHHHHHHH
Q 019378 152 MRSWCGMVQPESLLEDL 168 (342)
Q Consensus 152 l~~~~G~~~~~~~l~~L 168 (342)
-..-.|.++++.+..-|
T Consensus 166 ~~~~~~~~~~~~i~~Fl 182 (184)
T PF13848_consen 166 YYLPEGEITPESIEKFL 182 (184)
T ss_dssp EE--SSCGCHHHHHHHH
T ss_pred EcCCCCCCCHHHHHHHh
Confidence 22237888887765544
No 179
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.26 E-value=0.42 Score=34.24 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=37.2
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
++.++++||..|+.+.+ +| +++.. ...++-+..+|++.. ..++..|++.++|+++|
T Consensus 3 v~~f~~~~C~~C~~~~~-~l--~~l~~-~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQ-AA--NRIAA-LNPNISAEMIDAAEF--PDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHH-HH--HHHHH-hCCceEEEEEEcccC--HhHHHHcCCcccCEEEE
Confidence 46678899999998843 21 11111 123566776676543 34788999999999865
No 180
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.24 E-value=0.46 Score=42.57 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=52.9
Q ss_pred cC-CeEEE-EEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HHH
Q 019378 77 QD-KWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKV 129 (342)
Q Consensus 77 ~~-K~LlV-~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~~ 129 (342)
.+ ||++| ++-.++|+.|..-...+ +....++-+.++.+++++.++.+. ..+
T Consensus 23 ~g~k~vvlf~~pa~~cp~C~~el~~l--~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~i 100 (203)
T cd03016 23 LGDSWGILFSHPADFTPVCTTELGAF--AKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREV 100 (203)
T ss_pred cCCCEEEEEEecCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHH
Confidence 34 77655 55677898887743221 111222223467777777776432 244
Q ss_pred HHhCCCC--------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378 130 CTYYKLD--------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV 169 (342)
Q Consensus 130 ~~~y~v~--------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~ 169 (342)
+..|++. ..|.++|||| .|.+...+.|.. +.++++..|.
T Consensus 101 a~~yg~~~~~~~~~~~~r~~fiID~-~G~I~~~~~~~~~~gr~~~ell~~l~ 151 (203)
T cd03016 101 AKLLGMIDPDAGSTLTVRAVFIIDP-DKKIRLILYYPATTGRNFDEILRVVD 151 (203)
T ss_pred HHHcCCccccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 5677763 2457999998 688776665533 4556655553
No 181
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=92.77 E-value=0.87 Score=33.77 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=51.3
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
+|-||. ++.++-....++||.+|-.-|... .+.+.....|+.+ .+. + +.+.||+++|+. +++|.+.+
T Consensus 2 qi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~-~gip~~~q~Li~~--Gk~--L--~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 2 QLFVRA--QNTHTLEVTGQETVSDIKAHVAGL-EGIDVEDQVLLLA--GVP--L--EDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred EEEEEC--CCEEEEEECCcCcHHHHHHHHHhh-hCCCHHHEEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEEEE
Confidence 456676 466788899999999999999875 5667778888764 443 4 557999999998 57777654
No 182
>PRK13599 putative peroxiredoxin; Provisional
Probab=92.36 E-value=1 Score=40.83 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=51.4
Q ss_pred cCCeE-EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HHHH
Q 019378 77 QDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVC 130 (342)
Q Consensus 77 ~~K~L-lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~~~ 130 (342)
.+||+ |+++-.++|+.|..-...+ +....+|-+.++.+++++.++.+. ..++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l--~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEF--ARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 46785 4566677888887632111 111122223456666666665432 2345
Q ss_pred HhCCCC-------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHH
Q 019378 131 TYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLV 169 (342)
Q Consensus 131 ~~y~v~-------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~ 169 (342)
..|++. ..|+++|||| .|.+...+... ...++++..|.
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~ 153 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALK 153 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence 677762 5799999998 68876655322 24566665554
No 183
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=92.25 E-value=1.2 Score=31.69 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=43.5
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCC--hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s--~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~ 158 (342)
+..++.++|..|+... .++++ +.-+..+|++. .....+...+++.++|++.+ + |+. +.|
T Consensus 2 i~lf~~~~C~~C~~~~----------~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~---~~~---~~g- 63 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAK----------EYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-G---HKI---IVG- 63 (74)
T ss_pred EEEEcCCCChhHHHHH----------HHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-C---CEE---Eee-
Confidence 4567778999999863 22332 33444456654 33455788899999999976 2 543 667
Q ss_pred CChHHHHHH
Q 019378 159 VQPESLLED 167 (342)
Q Consensus 159 ~~~~~~l~~ 167 (342)
.+++.+.+.
T Consensus 64 ~~~~~i~~~ 72 (74)
T TIGR02196 64 FDPEKLDQL 72 (74)
T ss_pred CCHHHHHHH
Confidence 467666543
No 184
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=91.72 E-value=0.95 Score=30.29 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=47.5
Q ss_pred EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 269 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 269 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
+++++|.....++..+.++..|...+.... +.....|.|..+.+.. ....++.+.++. +..|.+
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~-~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~i~~ 66 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKL-GLPPEQQRLLVNGKIL------PDSLTLEDYGLQDGDELVL 66 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHH-CcChHHeEEEECCeEC------CCCCcHHHcCCCCCCEEEE
Confidence 677899999999999999999999998865 4567789999876553 223344566666 444544
No 185
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=91.29 E-value=1.8 Score=32.17 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=40.3
Q ss_pred EecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeC-CCChH
Q 019378 85 LQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG-MVQPE 162 (342)
Q Consensus 85 l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G-~~~~~ 162 (342)
+.+++|..|..+-. .+.+.+.+ + +-..+... .+...+ ..|++.+.|++ +|| |++ ++.| ..+.+
T Consensus 5 v~~~~C~~C~~~~~------~~~~~~~~~~-i~~ei~~~-~~~~~~-~~ygv~~vPal-vIn---g~~--~~~G~~p~~~ 69 (76)
T PF13192_consen 5 VFSPGCPYCPELVQ------LLKEAAEELG-IEVEIIDI-EDFEEI-EKYGVMSVPAL-VIN---GKV--VFVGRVPSKE 69 (76)
T ss_dssp EECSSCTTHHHHHH------HHHHHHHHTT-EEEEEEET-TTHHHH-HHTT-SSSSEE-EET---TEE--EEESS--HHH
T ss_pred EeCCCCCCcHHHHH------HHHHHHHhcC-CeEEEEEc-cCHHHH-HHcCCCCCCEE-EEC---CEE--EEEecCCCHH
Confidence 35667999997642 23333332 3 33333332 444445 99999999999 454 664 3778 56677
Q ss_pred HHHHHH
Q 019378 163 SLLEDL 168 (342)
Q Consensus 163 ~~l~~L 168 (342)
++.+.|
T Consensus 70 el~~~l 75 (76)
T PF13192_consen 70 ELKELL 75 (76)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766544
No 186
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=91.22 E-value=0.51 Score=44.71 Aligned_cols=102 Identities=11% Similarity=0.171 Sum_probs=69.1
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc-EEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~-FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
+..++++-...-|.++-|+ |.|+.+||.-|+.+. -||. +|---+++. .-+-.+-.+-+.-..+++.+++..||+|
T Consensus 29 ~VeDLddkFkdnkdddiW~-VdFYAPWC~HCKkLe-PiWd--eVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI 104 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIWF-VDFYAPWCAHCKKLE-PIWD--EVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI 104 (468)
T ss_pred hhhhhhHHhhhcccCCeEE-EEeechhhhhccccc-chhH--HhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence 5566777777777777775 899999999999995 5663 344444432 1111122333444567899999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
.++. |.......|.-+.+.+++....+
T Consensus 105 k~~k---gd~a~dYRG~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 105 KFFK---GDHAIDYRGGREKDAIIEFAHRC 131 (468)
T ss_pred EEec---CCeeeecCCCccHHHHHHHHHhc
Confidence 9985 44455677888888887755443
No 187
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=90.99 E-value=1.6 Score=33.21 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=52.6
Q ss_pred eEEEEECCCCce--EEEEeCCCCchHHHHHHHHhhcCC-CCCcCeEEEecCCCCccccCCCcCCChhhcC--Cc-CceEE
Q 019378 265 CRVGVRLPDGRR--MQRNFLRTDPIQLLWSYCYSQLEG-SEMKPFRLTHAIPGATKSLDYDSKLTFEDSG--LA-NAMIS 338 (342)
Q Consensus 265 ~~i~iRlP~G~r--~~rrF~~~~~l~~l~~fv~~~~~~-~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~g--L~-~~~l~ 338 (342)
++|.||.|+|++ +.-.+..++||.+|-.-|....+. .+...-+|+.. ++. | ..+.||++.+ +. .-+|+
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~--GKi--L--kD~~tL~~~~~~~~~~~tiH 75 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS--GKL--L--PDHLKLRDVLRKQDEYHMVH 75 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc--Cee--c--cchhhHHHHhhcccCCceEE
Confidence 579999999998 555558999999999999876432 33466788764 553 5 5579999996 55 46677
Q ss_pred EEe
Q 019378 339 VTW 341 (342)
Q Consensus 339 v~w 341 (342)
+++
T Consensus 76 LV~ 78 (79)
T cd01790 76 LVC 78 (79)
T ss_pred EEe
Confidence 764
No 188
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.94 E-value=0.87 Score=44.92 Aligned_cols=67 Identities=10% Similarity=0.174 Sum_probs=53.7
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCC---CCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEG---SEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~---~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
+|-||..+|+.+.-....++||.+|...|.... + ++....+|+.. .+. | +.++||+++|+.. +.|+|
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~-g~~~ip~~~QkLIy~--Gki--L--~Dd~tL~dy~I~e~~~Ivv 72 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQ-GKDAYPVAQQKLIYS--GKI--L--SDDKTVREYKIKEKDFVVV 72 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhh-CCCCCChhHeEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEE
Confidence 688999999999999999999999999998753 4 66677888854 553 5 4568999999984 55543
No 189
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=90.92 E-value=1.6 Score=41.05 Aligned_cols=102 Identities=15% Similarity=0.246 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 145 (342)
.|-+++..+ ..+-|++|.|+.+....|..|+.-+ ..-..+|..-.||=....... ++..|+...+|+|+|.-
T Consensus 135 ~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L--~~LA~kyp~vKFvkI~a~~~~-----~~~~f~~~~LPtllvYk 206 (265)
T PF02114_consen 135 EFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCL--ECLARKYPEVKFVKIRASKCP-----ASENFPDKNLPTLLVYK 206 (265)
T ss_dssp HHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHH--HHHHHH-TTSEEEEEEECGCC-----TTTTS-TTC-SEEEEEE
T ss_pred hHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHH--HHHHHhCCceEEEEEehhccC-----cccCCcccCCCEEEEEE
Confidence 454554432 2346999999999999999997432 233345556678766544321 46689999999999997
Q ss_pred CCCCceEEEEeCC---CChHHHHHHHHhhhhcCCC
Q 019378 146 PITGQKMRSWCGM---VQPESLLEDLVPFMDGGPR 177 (342)
Q Consensus 146 p~tG~~l~~~~G~---~~~~~~l~~L~~~l~~~~~ 177 (342)
.|.++..+.|. ..-+-+...|..+|..+..
T Consensus 207 --~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 207 --NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp --TTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred --CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 69999888774 2345567788888887654
No 190
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=90.12 E-value=2.2 Score=31.86 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=51.7
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
+|.|++ +|+++.-.+..++||.+|-+-+... .+.++..-+|+..=++.. .+ ..+.||.++|+.+ +.|++
T Consensus 2 ~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~-tgvp~~~QKLi~~~~~Gk-~l--~D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 2 PVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTL-TGVLPERQKLLGLKVKGK-PA--EDDVKISALKLKPNTKIMM 71 (74)
T ss_pred EEEEEE-CCEEEEEEECCCCCHHHHHHHHHHH-HCCCHHHEEEEeecccCC-cC--CCCcCHHHcCCCCCCEEEE
Confidence 577777 7788888999999999999999885 477888888885201221 23 4589999999984 55554
No 191
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=89.88 E-value=1.6 Score=33.08 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=51.4
Q ss_pred CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCC--CCCCcEEEEEeCCCCceE
Q 019378 78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYK--LDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~--v~~~P~l~ii~p~tG~~l 152 (342)
+++++|++.++||..|..+ .+.+.++-.. ...+..++..+ ....+...|+ +..+|.+.+... |..+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~p~~~~~~~--~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDD-ENPDLAAEFGVAVRSIPTLLLFKD--GKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCC-CChHHHHHHhhhhccCCeEEEEeC--cchh
Confidence 8899999889999999998 4555555543 35666666642 4455677777 888898876552 3334
Q ss_pred EEEeC--CCChHHHHH
Q 019378 153 RSWCG--MVQPESLLE 166 (342)
Q Consensus 153 ~~~~G--~~~~~~~l~ 166 (342)
....| ......++.
T Consensus 103 ~~~~~~~~~~~~~~~~ 118 (127)
T COG0526 103 DRLVGGKVLPKEALID 118 (127)
T ss_pred hhhhhcccCCHHHHHH
Confidence 34444 334444443
No 192
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=89.45 E-value=1 Score=34.02 Aligned_cols=71 Identities=25% Similarity=0.353 Sum_probs=46.0
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCC--CCC---cCeEEEecCCCCccccCCCcCCChhhcCCcCceEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEG--SEM---KPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 338 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~--~~~---~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~ 338 (342)
.|+|.|..++|+++.-..+.+-++..|..-+...+.. .+. ..|.|.+. +.. ..+.+.||.++|+.++.++
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~-~g~----~L~~~~tL~~~gV~dGd~L 76 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARA-GGR----PLDPDQTLADAGVRDGDVL 76 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-G-GTE----EEETTSBCGGGT--TT-EE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEec-CCc----ccCCcCcHhHcCCCCCCEE
Confidence 5899999999899999999999999999987775432 122 25788742 222 2378999999999976654
Q ss_pred E
Q 019378 339 V 339 (342)
Q Consensus 339 v 339 (342)
+
T Consensus 77 ~ 77 (79)
T PF08817_consen 77 V 77 (79)
T ss_dssp E
T ss_pred E
Confidence 3
No 193
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=88.99 E-value=1.8 Score=32.30 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=48.4
Q ss_pred CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 273 DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 273 ~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
+|+.+.-.+..++||..|-+-|... .|.+....+|+.. .+. + +.+.||.+.|+. +++|.|.+
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~-~gip~~~q~L~~~--G~~--L--~d~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEE-TGMPAGKQKLQYE--GIF--I--KDSNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHH-HCCCHHHEEEEEC--CEE--c--CCCCcHHHcCCCCCCEEEEEE
Confidence 6788889999999999999999875 4677778888754 332 4 457899999998 56676653
No 194
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=88.82 E-value=3.6 Score=31.49 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=51.6
Q ss_pred eEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCc--cccCCCcCCChhhcCCcCce-EEE
Q 019378 265 CRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGAT--KSLDYDSKLTFEDSGLANAM-ISV 339 (342)
Q Consensus 265 ~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~--~~l~~~~~~Tl~e~gL~~~~-l~v 339 (342)
++|.|..++-+ ...+||..+.||..|-.-|.... |.++...+|.--..... .....+.+++|...|+.+++ |+|
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~-Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLT-GIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHH-TS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHh-CCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 67888887774 89999999999999999998854 66777777754211111 11124679999999999554 554
No 195
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=88.32 E-value=0.76 Score=37.83 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEecC-------CCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHH-----HHH
Q 019378 66 SFEKAKDAASVQDKWLLVNLQST-------KEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGK-----KVC 130 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~-------~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~-----~~~ 130 (342)
.|.++++.....+++++|+|.++ ||++|..- .+-|.+.+. ++.++..+.+.+.... .|-
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~a------ep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR 80 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAA------EPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFR 80 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHH------HHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHH
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHH------HHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCce
Confidence 35566666667889999999974 67777664 455555554 3677766666554321 233
Q ss_pred H--hCCCCCCcEEEEEe
Q 019378 131 T--YYKLDSIPVVLVVD 145 (342)
Q Consensus 131 ~--~y~v~~~P~l~ii~ 145 (342)
+ .+++.++|+|+-+.
T Consensus 81 ~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 81 TDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp H--CC---SSSEEEECT
T ss_pred EcceeeeeecceEEEEC
Confidence 3 68999999999886
No 196
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=1.5 Score=44.67 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
..+|++ .+-.++|=+||-++.+||.-|+.|.. + =+++.+.++ ++.|+-.+|++..|- ....+..||+|
T Consensus 373 gknfd~---iv~de~KdVLvEfyAPWCgHCk~laP-~--~eeLAe~~~~~~~vviAKmDaTaNd~----~~~~~~~fPTI 442 (493)
T KOG0190|consen 373 GKNFDD---IVLDEGKDVLVEFYAPWCGHCKALAP-I--YEELAEKYKDDENVVIAKMDATANDV----PSLKVDGFPTI 442 (493)
T ss_pred ecCHHH---HhhccccceEEEEcCcccchhhhhhh-H--HHHHHHHhcCCCCcEEEEeccccccC----ccccccccceE
Confidence 345554 56688999999999999999999942 1 234555554 378888889887663 23456779999
Q ss_pred EEEeCCCC-ceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 142 LVVDPITG-QKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 142 ~ii~p~tG-~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
++.-- .+ +..-...|.-+.++|. .|+..+
T Consensus 443 ~~~pa-g~k~~pv~y~g~R~le~~~----~fi~~~ 472 (493)
T KOG0190|consen 443 LFFPA-GHKSNPVIYNGDRTLEDLK----KFIKKS 472 (493)
T ss_pred EEecC-CCCCCCcccCCCcchHHHH----hhhccC
Confidence 98753 22 2344456766666664 566654
No 197
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.46 E-value=8 Score=33.39 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=60.6
Q ss_pred HHHHHHcCCeEEEEEecC-CCcchh-hhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HH
Q 019378 71 KDAASVQDKWLLVNLQST-KEFSSH-MLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KV 129 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~-~~~~~~-~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~ 129 (342)
+..+.-.+||+++||+-- +.+-|. ..|. -++...+|=+-+.++++++.++++.. .+
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~---Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v 99 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACD---FRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEV 99 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchHHHHH---HHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHH
Confidence 556667789999999963 233332 2221 11223333345899999999987764 34
Q ss_pred HHhCCC------------CCCcEEEEEeCCCCceEEEEeCC---CChHHHHHHHHh
Q 019378 130 CTYYKL------------DSIPVVLVVDPITGQKMRSWCGM---VQPESLLEDLVP 170 (342)
Q Consensus 130 ~~~y~v------------~~~P~l~ii~p~tG~~l~~~~G~---~~~~~~l~~L~~ 170 (342)
+..|++ ..-+...|||+ .|.+...|... -.+++.++.|..
T Consensus 100 ~~~ygv~~~k~~~gk~~~~~~R~TfvId~-dG~I~~~~~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 100 AEAYGVWGEKKMYGKEYMGIERSTFVIDP-DGKIRYVWRKVKVKGHADEVLAALKK 154 (157)
T ss_pred HHHhCcccccccCccccccccceEEEECC-CCeEEEEecCCCCcccHHHHHHHHHH
Confidence 567766 23578899997 68988888542 234566655543
No 198
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=86.00 E-value=0.99 Score=24.42 Aligned_cols=16 Identities=44% Similarity=0.551 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHhHHH
Q 019378 205 IENEELLQALAASMET 220 (342)
Q Consensus 205 eqde~~e~Al~asle~ 220 (342)
++|+++++||+.|+++
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 5788999999999975
No 199
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=85.96 E-value=1.2 Score=36.99 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=41.4
Q ss_pred HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc-EEEEEeecCChhHHHHHHhC---CCCCCcEEEEEeCCCCc
Q 019378 75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTSEGKKVCTYY---KLDSIPVVLVVDPITGQ 150 (342)
Q Consensus 75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~-FV~w~~~~~s~eg~~~~~~y---~v~~~P~l~ii~p~tG~ 150 (342)
.-..+.-++.|..+||.+|.... |-+..+...+ -|-+.+ +...+...+...| +..+.|+++|+|. .|+
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~v------P~l~kiae~~p~i~~~~-i~rd~~~el~~~~lt~g~~~IP~~I~~d~-~~~ 109 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNV------PVLAKIAEANPNIEVRI-ILRDENKELMDQYLTNGGRSIPTFIFLDK-DGK 109 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHH------HHHHHHHHH-TTEEEEE-E-HHHHHHHTTTTTT-SS--SSEEEEE-T-T--
T ss_pred hcCCCcEEEEEECCCchhHHHHH------HHHHHHHHhCCCCeEEE-EEecCChhHHHHHHhCCCeecCEEEEEcC-CCC
Confidence 44455677788899999999975 5666666654 333332 1233444554444 5678999999996 589
Q ss_pred eEEEEeCC
Q 019378 151 KMRSWCGM 158 (342)
Q Consensus 151 ~l~~~~G~ 158 (342)
.+.+|-..
T Consensus 110 ~lg~wger 117 (129)
T PF14595_consen 110 ELGRWGER 117 (129)
T ss_dssp EEEEEESS
T ss_pred EeEEEcCC
Confidence 99999653
No 200
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=85.53 E-value=6.9 Score=40.55 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=56.9
Q ss_pred HHHHHcCCeEEEEE-ecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCC
Q 019378 72 DAASVQDKWLLVNL-QSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 148 (342)
Q Consensus 72 ~~Ak~~~K~LlV~l-~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~t 148 (342)
+.-++-.|++-|-+ .+++|..|....+- +.++..+ +.-.-.++.. +-..++..|+|.+.|+++| +
T Consensus 469 ~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~------~~~~~~~~~~i~~~~i~~~--~~~~~~~~~~v~~vP~~~i----~ 536 (555)
T TIGR03143 469 EKIKKITKPVNIKIGVSLSCTLCPDVVLA------AQRIASLNPNVEAEMIDVS--HFPDLKDEYGIMSVPAIVV----D 536 (555)
T ss_pred HHHHhcCCCeEEEEEECCCCCCcHHHHHH------HHHHHHhCCCceEEEEECc--ccHHHHHhCCceecCEEEE----C
Confidence 33345567775555 79999999986532 2333333 4555554443 4467889999999999997 4
Q ss_pred CceEEEEeCCCChHHHHHHH
Q 019378 149 GQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 149 G~~l~~~~G~~~~~~~l~~L 168 (342)
|+++ +.|..+.++++..|
T Consensus 537 ~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 537 DQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred CEEE--EeeCCCHHHHHHhh
Confidence 6654 66988999998866
No 201
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=85.42 E-value=14 Score=30.70 Aligned_cols=98 Identities=13% Similarity=0.194 Sum_probs=66.7
Q ss_pred HHHHH--HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCC
Q 019378 70 AKDAA--SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 147 (342)
Q Consensus 70 A~~~A--k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~ 147 (342)
++.+| ..+.|.++|-|-.+|.+.|-.|+ ++|. .+..-+++--++|-++++ +-..+.+.|.+...|++.+.-..
T Consensus 13 ~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD-~~L~--~i~~~vsnfa~Iylvdid--eV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 13 EVDQAILSTEERLVVIRFGRDWDPTCMKMD-ELLS--SIAEDVSNFAVIYLVDID--EVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHhcccceEEEEEecCCCCchHhhHH-HHHH--HHHHHHhhceEEEEEecc--hhhhhhhhhcccCCceEEEEEcC
Confidence 34444 46779999999999999999995 3332 233444556678888887 56678889999999988775432
Q ss_pred --------CCceEEEEeCC-CChHHHHHHHHhhhh
Q 019378 148 --------TGQKMRSWCGM-VQPESLLEDLVPFMD 173 (342)
Q Consensus 148 --------tG~~l~~~~G~-~~~~~~l~~L~~~l~ 173 (342)
||. -..|.|. -+.++|++.+..+..
T Consensus 88 kHmkiD~gtgd-n~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 88 KHMKIDLGTGD-NNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred ceEEEeeCCCC-CceEEEEeccHHHHHHHHHHHHH
Confidence 221 1234443 367889988877664
No 202
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=85.38 E-value=2.5 Score=29.62 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=34.6
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
+.+..++|..|... +++|++ .|..+-++.+......+...++..++|.+.|
T Consensus 2 ~vy~~~~C~~C~~~----------~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 2 VVYTKPGCPYCKKA----------KEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEESTTSHHHHHH----------HHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred EEEEcCCCcCHHHH----------HHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 55677899999986 455554 4666655544434444566669999999986
No 203
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=85.15 E-value=2.8 Score=31.60 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=39.8
Q ss_pred CCCCchHHHHHHHHhhc-CCC-CCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 282 LRTDPIQLLWSYCYSQL-EGS-EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 282 ~~~~~l~~l~~fv~~~~-~~~-~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..++||..|-.-|.... ++. +...++|+.. .+. | +.+.||++.|+. +++|+++
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~--GKi--L--~D~~TL~dygI~~gstlhLv 73 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHC--GRK--L--KDDQTLDFYGIQSGSTIHIL 73 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeC--CcC--C--CCCCcHHHcCCCCCCEEEEE
Confidence 57899999999998875 233 3667899864 553 4 567999999998 6777654
No 204
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=84.93 E-value=3.9 Score=30.60 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=47.4
Q ss_pred ECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-C-ceEEE
Q 019378 270 RLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-N-AMISV 339 (342)
Q Consensus 270 RlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~-~~l~v 339 (342)
+...|+.+.-.+..++||..|-..+... .|.++...+| |-.+. + .+.+.||+++|+. + .+|++
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~-~gip~~~QrL---~~G~~--L-~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLD-YGFPPAVQRW---VIGQR--L-ARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEE---EcCCe--e-CCCcCCHHHcCCCCCCCEEEE
Confidence 4567778889999999999999999876 4667777888 32432 4 3567999999998 5 45543
No 205
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=84.76 E-value=0.87 Score=46.69 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=78.9
Q ss_pred HhhCCCCcC--cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCCh
Q 019378 53 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTS 124 (342)
Q Consensus 53 ~~f~pp~~~--~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s~ 124 (342)
.+|-|-.++ +-..+|..|+..++ |--||-|.++||..|..|- |..+++-+. =..+..+|--..
T Consensus 33 tLy~~~D~ii~Ld~~tf~~~v~~~~---~~~lVEFy~swCGhCr~FA------Ptfk~~A~dl~~W~~vv~vaaVdCA~~ 103 (606)
T KOG1731|consen 33 TLYSPDDPIIELDVDTFNAAVFGSR---KAKLVEFYNSWCGHCRAFA------PTFKKFAKDLEKWRPVVRVAAVDCADE 103 (606)
T ss_pred cccCCCCCeEEeehhhhHHHhcccc---hhHHHHHHHhhhhhhhhcc------hHHHHHHHHHhcccceeEEEEeeccch
Confidence 355554444 44778999988776 5568999999999999994 444444432 245566778888
Q ss_pred hHHHHHHhCCCCCCcEEEEEeCCCCc--eEEEEeCCCChHHHHHHHHhhhh
Q 019378 125 EGKKVCTYYKLDSIPVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 125 eg~~~~~~y~v~~~P~l~ii~p~tG~--~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+...+|+.++|..||+|-...|..-. .=..+.|...+.++.+.|...+.
T Consensus 104 ~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 104 ENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred hhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 89999999999999999998874211 11345666667777776666654
No 206
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=84.56 E-value=5.2 Score=33.24 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=45.0
Q ss_pred HHHHHhcc-EEEEEeecCChhHHHHHHhCCCC--CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 106 VSQTISTN-FIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 106 V~~~i~~~-FV~w~~~~~s~eg~~~~~~y~v~--~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
|.+-.+.. +.|.-+|.+.... +...+++. .+|.++++++..+ .-....|.++.+.+.+-+..+++-
T Consensus 49 vAk~~kgk~i~Fv~vd~~~~~~--~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 49 VAEKFKKKPWGWLWTEAGAQLD--LEEALNIGGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred HHHHhcCCcEEEEEEeCcccHH--HHHHcCCCccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence 44444456 5555555554433 88889984 5999999998654 322367888999888877777764
No 207
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=83.29 E-value=2.7 Score=37.15 Aligned_cols=91 Identities=9% Similarity=0.080 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeec--------------------------
Q 019378 68 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYD-------------------------- 121 (342)
Q Consensus 68 ~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~-------------------------- 121 (342)
..++......++..++.|.+.+|..|+.|...+-.+ ..-++=.++++.+.-
T Consensus 67 ~~~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~~---~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~ 143 (197)
T cd03020 67 DDAIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKPN---ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMS 143 (197)
T ss_pred ccCeEEcCCCCCEEEEEEECCCCccHHHHHHHHhhc---cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHh
Confidence 344445555678888889999999998886544210 000111222222111
Q ss_pred -------------CChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHH
Q 019378 122 -------------DTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLED 167 (342)
Q Consensus 122 -------------~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~ 167 (342)
.-.+...++..+++.+.|++++ . +|.. +.|..+++.|...
T Consensus 144 ~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii~-~--~G~~---~~G~~~~~~l~~~ 196 (197)
T cd03020 144 GGKVPPPAASCDNPVAANLALGRQLGVNGTPTIVL-A--DGRV---VPGAPPAAQLEAL 196 (197)
T ss_pred CCCCCCCccccCchHHHHHHHHHHcCCCcccEEEE-C--CCeE---ecCCCCHHHHHhh
Confidence 0111234567889999999974 2 3654 6788888877653
No 208
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.95 E-value=3.6 Score=40.51 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=64.4
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 150 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~ 150 (342)
..+......||-|+.+||..|+.|- -.|. .+...+. ...-++.++.+ -...+++.+.+..||++.+..+ .++
T Consensus 157 ~~~~~~~~~lv~f~aPwc~~ck~l~-~~~~--~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~-~~~ 230 (383)
T KOG0191|consen 157 TVKDSDADWLVEFYAPWCGHCKKLA-PEWE--KLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPP-GEE 230 (383)
T ss_pred hhhccCcceEEEEeccccHHhhhcC-hHHH--HHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecC-CCc
Confidence 3455677788888999999999983 2222 2333443 45555555554 5567889999999999977765 333
Q ss_pred eEEEEeCCCChHHHHHHHHhhhhc
Q 019378 151 KMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 151 ~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
......|.-+.+.++..+......
T Consensus 231 ~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 231 DIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred ccccccccccHHHHHHHHHhhcCC
Confidence 244556677888887766666554
No 209
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=82.93 E-value=2 Score=31.82 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=35.1
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh--hHH-HHHHhCCCCCCcEEEE
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGK-KVCTYYKLDSIPVVLV 143 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~--eg~-~~~~~y~v~~~P~l~i 143 (342)
+.+..+||..|..+. .+|..-. ++..|.++.++.+.. +.. .+.+.++..++|.+.+
T Consensus 2 ~~f~~~~Cp~C~~~~-~~L~~~~----i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 2 VVFSKSYCPYCKKAK-EILAKLN----VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred EEEECCCChhHHHHH-HHHHHcC----CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 567788999999984 2222211 222377777766532 222 3667789999999853
No 210
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=82.74 E-value=4.5 Score=30.01 Aligned_cols=64 Identities=19% Similarity=0.023 Sum_probs=46.1
Q ss_pred EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEe-cCCCCccccCCCcCCChhhcCCc
Q 019378 269 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTH-AIPGATKSLDYDSKLTFEDSGLA 333 (342)
Q Consensus 269 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~-~fPr~~~~l~~~~~~Tl~e~gL~ 333 (342)
|+||||+.++-....+.+.++|++-|..++.-....-|-|.- .-+... ..-.+.+++|.+..-.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~-~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGE-HHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSS-EEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCc-ceeccCcccHHHHcCC
Confidence 689999999999999999999999998887433455688866 111111 1223778888888655
No 211
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=82.31 E-value=3.7 Score=38.17 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=33.6
Q ss_pred HHHHHhCCC---------------CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 127 KKVCTYYKL---------------DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 127 ~~~~~~y~v---------------~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
.++|+.|+| +.-=++++|+| .|+.+...--+-+++++.+.|..-+..+
T Consensus 216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidP-eg~Fvd~~GrN~~~~~~~~~I~~~v~~y 278 (280)
T KOG2792|consen 216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDP-EGEFVDYYGRNYDADELADSILKHVASY 278 (280)
T ss_pred HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECC-CcceehhhcccCCHHHHHHHHHHHHHhc
Confidence 466778876 22236788999 5887766544778999988887766543
No 212
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=82.25 E-value=14 Score=26.46 Aligned_cols=70 Identities=11% Similarity=0.002 Sum_probs=37.4
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhcc-EEEEEeecCCh-hHHHHH-Hh-CCCCCCcEEEEEeCCCCceEEEEeC
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTS-EGKKVC-TY-YKLDSIPVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~-FV~w~~~~~s~-eg~~~~-~~-y~v~~~P~l~ii~p~tG~~l~~~~G 157 (342)
++.+..++|..|..+. .++.++ .-+..+|++.. +..... .. ++..++|++ +++ +|..+.
T Consensus 2 v~ly~~~~C~~C~~~~----------~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~--~g~~l~---- 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLM----------RTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFA--DGSFLT---- 64 (77)
T ss_pred EEEEECCCChhHHHHH----------HHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EEC--CCeEec----
Confidence 3456778999999863 344432 22223455433 222222 22 478899997 454 455432
Q ss_pred CCChHHHHHHH
Q 019378 158 MVQPESLLEDL 168 (342)
Q Consensus 158 ~~~~~~~l~~L 168 (342)
..+..++.+.|
T Consensus 65 ~~~~~~~~~~l 75 (77)
T TIGR02200 65 NPSAAQVKAKL 75 (77)
T ss_pred CCCHHHHHHHh
Confidence 34455555544
No 213
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=80.44 E-value=6.9 Score=30.04 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=34.8
Q ss_pred CCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHH-HHHHhCCCCCCcEEEEEe
Q 019378 78 DKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK-KVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 78 ~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~-~~~~~y~v~~~P~l~ii~ 145 (342)
.++++|+..+ ++|..|... +++|++ .|...-++.+ ++.. .+....+..++|.|. |+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~a----------k~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vf-i~ 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKV----------VQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLY-VN 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHH----------HHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEE-EC
Confidence 3677788765 688888875 445554 3444443333 3333 355667888999984 54
No 214
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=79.38 E-value=6.1 Score=28.87 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=37.2
Q ss_pred CCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCce
Q 019378 271 LPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM 336 (342)
Q Consensus 271 lP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~ 336 (342)
.++|+|..-+...+.+|.+|..=+-.++ +.++..|.|..+ ++. + |.+.++.=+||.|++
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~-~l~~~~~~L~h~--~k~--l--dlslp~R~snL~n~a 61 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKF-GLDPSSYDLKHN--NKP--L--DLSLPFRLSNLPNNA 61 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHT-T--GGG-EEEET--TEE--E--SSS-BHHHH---SS-
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHc-CCCccceEEEEC--CEE--e--ccccceeecCCCCCC
Confidence 4789999999999999999998876664 566779999986 332 4 889999999999543
No 215
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=78.74 E-value=10 Score=27.77 Aligned_cols=55 Identities=5% Similarity=0.030 Sum_probs=34.6
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh-hH--HHHHHhCCCCCCcEEEEEe
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-EG--KKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~-eg--~~~~~~y~v~~~P~l~ii~ 145 (342)
+.++.++|+.|.... . +.+-+...|.++.++.+.. .. ..+.+.++..++|.++ ++
T Consensus 3 ~~y~~~~Cp~C~~~~-~------~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~-~~ 60 (82)
T cd03419 3 VVFSKSYCPYCKRAK-S------LLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF-IG 60 (82)
T ss_pred EEEEcCCCHHHHHHH-H------HHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE-EC
Confidence 556778999999973 1 1222223577777776543 22 2355778899999984 44
No 216
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=78.11 E-value=2.4 Score=25.18 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhHHHhhc
Q 019378 205 IENEELLQALAASMETIKD 223 (342)
Q Consensus 205 eqde~~e~Al~asle~~~~ 223 (342)
++|++|++|++.|+++...
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~ 19 (26)
T smart00726 1 DEDEDLQLALELSLQEAEE 19 (26)
T ss_pred ChHHHHHHHHHHhHHHhhh
Confidence 3688999999999987543
No 217
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.68 E-value=19 Score=36.91 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=57.9
Q ss_pred HHHHHHcCCeE-EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCC
Q 019378 71 KDAASVQDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG 149 (342)
Q Consensus 71 ~~~Ak~~~K~L-lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG 149 (342)
++..++-.|++ +..|.++.|+.|...-+- + .-....+.+..+.. ++..+-..++..|++.+.|+++| + |
T Consensus 108 ~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~-~---~~~a~~~~~i~~~~--id~~~~~~~~~~~~v~~VP~~~i-~---~ 177 (517)
T PRK15317 108 IEQIKALDGDFHFETYVSLSCHNCPDVVQA-L---NLMAVLNPNITHTM--IDGALFQDEVEARNIMAVPTVFL-N---G 177 (517)
T ss_pred HHHHHhcCCCeEEEEEEcCCCCCcHHHHHH-H---HHHHHhCCCceEEE--EEchhCHhHHHhcCCcccCEEEE-C---C
Confidence 33445555666 667778899999875321 1 11122344544444 35666778899999999999975 3 4
Q ss_pred ceEEEEeCCCChHHHHHHHHh
Q 019378 150 QKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 150 ~~l~~~~G~~~~~~~l~~L~~ 170 (342)
+.+ +.|..+.++|++.|..
T Consensus 178 ~~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 178 EEF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred cEE--EecCCCHHHHHHHHhc
Confidence 443 6688888899887764
No 218
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=76.86 E-value=21 Score=31.15 Aligned_cols=70 Identities=20% Similarity=0.121 Sum_probs=48.8
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 333 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 333 (342)
...|+|.||||+.+.-++..+.++++|..-|...+.-....-|.|...-+........+...+|.+....
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 4689999999999999999999999999999887632234567776543322111123456777766543
No 219
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=76.78 E-value=28 Score=27.97 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=49.0
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeec--CChhHHHHHHhCCCC-CCcEEEEEeCCCC
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYD--DTSEGKKVCTYYKLD-SIPVVLVVDPITG 149 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~--~s~eg~~~~~~y~v~-~~P~l~ii~p~tG 149 (342)
...++++|+=|++.|.-+.+-- ..+.++++. ..-+|-+++ ..+-...++..|+|. .=|-+++|. +|
T Consensus 17 S~~~~~~iFKHSt~C~IS~~a~------~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~--~g 88 (105)
T PF11009_consen 17 SKEKPVLIFKHSTRCPISAMAL------REFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIK--NG 88 (105)
T ss_dssp ---SEEEEEEE-TT-HHHHHHH------HHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEE--TT
T ss_pred cccCcEEEEEeCCCChhhHHHH------HHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEE--CC
Confidence 3489999999999998777653 345566653 133444444 445566788899994 479999998 69
Q ss_pred ceEEEEe-CCCChHHH
Q 019378 150 QKMRSWC-GMVQPESL 164 (342)
Q Consensus 150 ~~l~~~~-G~~~~~~~ 164 (342)
+.++.-+ +.++++.+
T Consensus 89 ~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 89 KVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEEEGGG-SHHHH
T ss_pred EEEEECccccCCHHhc
Confidence 9886654 35777654
No 220
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=76.51 E-value=10 Score=37.38 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=52.6
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhh-cCCCCCcCeEEEecCCC-CccccCCCcCCChhhcCCcC-ceEEEEe
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQ-LEGSEMKPFRLTHAIPG-ATKSLDYDSKLTFEDSGLAN-AMISVTW 341 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~-~~~~~~~~f~L~~~fPr-~~~~l~~~~~~Tl~e~gL~~-~~l~v~w 341 (342)
-++||-++|.+ .-.|..+|.+..|..-+... ..++.+..|.+.++ |. +-.......++|+.|+||.+ .+|.+.+
T Consensus 2 i~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~-p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 2 IFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSA-PDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred eEEEecCCCce-eeeccccchhhhhhHHHHhhhccCCCccceEEEeC-CCCCceeeecccccChhhhccccCcEEEEEe
Confidence 37899999974 45688999998776655443 24677889999987 44 22223346799999999995 5555553
No 221
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=74.58 E-value=14 Score=27.45 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=37.0
Q ss_pred CCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378 282 LRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 340 (342)
Q Consensus 282 ~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~ 340 (342)
..+.||.+|...+......+......|.-.+..+. + ..+.||.+.|+.. ++|.|+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~--L--~d~~tL~~~gv~~g~~lyvK 75 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKS--L--KDDDTLVDLGVGAGATLYVR 75 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcc--c--CCcccHhhcCCCCCCEEEEe
Confidence 45679999999998764333455666765555543 4 3467899999984 556653
No 222
>PLN02560 enoyl-CoA reductase
Probab=73.53 E-value=23 Score=33.94 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=48.1
Q ss_pred EEEEECCCCceE---EEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec----CCCCccccCCCcCCChhhcCCc-CceE
Q 019378 266 RVGVRLPDGRRM---QRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA----IPGATKSLDYDSKLTFEDSGLA-NAMI 337 (342)
Q Consensus 266 ~i~iRlP~G~r~---~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~----fPr~~~~l~~~~~~Tl~e~gL~-~~~l 337 (342)
+|.|+..+|+.+ .-....+.||.+|..-+...........-+|.-. =|+. ...+.++||+|.|+. .++|
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g---~~L~d~ktL~d~gv~~gstL 78 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRP---TVLDDSKSLKDYGLGDGGTV 78 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCc---cccCCCCCHHhcCCCCCceE
Confidence 477788889876 4678899999999999987632223445556521 1222 113567899999998 4556
Q ss_pred EEE
Q 019378 338 SVT 340 (342)
Q Consensus 338 ~v~ 340 (342)
.|+
T Consensus 79 y~k 81 (308)
T PLN02560 79 VFK 81 (308)
T ss_pred EEE
Confidence 654
No 223
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=73.04 E-value=37 Score=25.75 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=50.1
Q ss_pred eEEEEECCC-CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccc--cCCCcCCChhhcCCc-CceEEEE
Q 019378 265 CRVGVRLPD-GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKS--LDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 265 ~~i~iRlP~-G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~--l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
++|.|.-+. .....|||..+.||..|-.=+... -|.++..-+|.- |..+... ...+.+++|...|+. +..|+|+
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~-~G~~~~~mrL~l-~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELV-VGTPASSMRLQL-FDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHH-HCCCccceEEEE-EcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 345555543 456899999999999999988775 366666677742 2233111 124778999999998 4667664
No 224
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=72.99 E-value=15 Score=28.71 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=33.2
Q ss_pred CCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecC-ChhHH-HHHHhCCCCCCcEEEE
Q 019378 78 DKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDD-TSEGK-KVCTYYKLDSIPVVLV 143 (342)
Q Consensus 78 ~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~-s~eg~-~~~~~y~v~~~P~l~i 143 (342)
...++||..+ ++|+.|... ++++++ .|..+ |+. .++.. .+....+..++|.|.|
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~a----------k~lL~~~~i~~~~~--di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARA----------VQILKACGVPFAYV--NVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHH----------HHHHHHcCCCEEEE--ECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 3567777765 789999885 445543 34443 443 23333 3445566789999964
No 225
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=72.70 E-value=18 Score=25.38 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=36.6
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCC-hh-HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDT-SE-GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s-~e-g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~ 158 (342)
++.++.++|..|..+. .++.+ ++-+-.++++. .+ ...+....++..+|++.+ + |. .+.|
T Consensus 2 v~l~~~~~c~~c~~~~----------~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~-~---~~---~i~g- 63 (73)
T cd02976 2 VTVYTKPDCPYCKATK----------RFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI-G---DE---HLSG- 63 (73)
T ss_pred EEEEeCCCChhHHHHH----------HHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE-C---CE---EEec-
Confidence 4667888999998852 23332 22223334443 22 233445557899999864 3 42 4555
Q ss_pred CChHHHH
Q 019378 159 VQPESLL 165 (342)
Q Consensus 159 ~~~~~~l 165 (342)
.++..+.
T Consensus 64 ~~~~~l~ 70 (73)
T cd02976 64 FRPDKLR 70 (73)
T ss_pred CCHHHHH
Confidence 4555543
No 226
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=72.66 E-value=28 Score=35.60 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCeE-EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCC
Q 019378 69 KAKDAASVQDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 147 (342)
Q Consensus 69 eA~~~Ak~~~K~L-lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~ 147 (342)
+.++..++-.+++ +-.|.++.|+.|...-+- + .-....+.+..... ++..+-..++..|++.+.|+++| +
T Consensus 107 ~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~-~---~~~a~~~p~i~~~~--id~~~~~~~~~~~~v~~VP~~~i-~-- 177 (515)
T TIGR03140 107 GIIDRIRRLNGPLHFETYVSLTCQNCPDVVQA-L---NQMALLNPNISHTM--IDGALFQDEVEALGIQGVPAVFL-N-- 177 (515)
T ss_pred HHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHH-H---HHHHHhCCCceEEE--EEchhCHHHHHhcCCcccCEEEE-C--
Confidence 3344445545665 666777889999864211 1 11222233433333 66667778899999999999986 3
Q ss_pred CCceEEEEeCCCChHHHHHHHHhh
Q 019378 148 TGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 148 tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
|+.+ +.|..+.++|+..|...
T Consensus 178 -~~~~--~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 178 -GEEF--HNGRMDLAELLEKLEET 198 (515)
T ss_pred -CcEE--EecCCCHHHHHHHHhhc
Confidence 4533 67888899998887665
No 227
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=71.68 E-value=21 Score=26.70 Aligned_cols=79 Identities=15% Similarity=0.030 Sum_probs=51.2
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCC
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 160 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~ 160 (342)
++.++.++|.-|.... +.+..+. ...|-+-.+|+++.+. +...|+. ..|.+.+-++++........+.++
T Consensus 2 l~l~~k~~C~LC~~a~------~~L~~~~~~~~~~l~~vDI~~d~~--l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAK------EILEEVAAEFPFELEEVDIDEDPE--LFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHH------HHHHHCCTTSTCEEEEEETTTTHH--HHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHH------HHHHHHHhhcCceEEEEECCCCHH--HHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 5677888999888873 2233322 3468888889985443 7778985 799988876532222445667889
Q ss_pred hHHHHHHHH
Q 019378 161 PESLLEDLV 169 (342)
Q Consensus 161 ~~~~l~~L~ 169 (342)
.+.+.+.|+
T Consensus 73 ~~~L~~~L~ 81 (81)
T PF05768_consen 73 EEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 988877663
No 228
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=70.87 E-value=23 Score=28.42 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=37.5
Q ss_pred HHHHHHh-ccEEEEEeecCChhHHHHHHhCCCC--C--CcEEEEEeCCCCceEEEEeCCC-ChHHHHHHHHhh
Q 019378 105 AVSQTIS-TNFIFWQVYDDTSEGKKVCTYYKLD--S--IPVVLVVDPITGQKMRSWCGMV-QPESLLEDLVPF 171 (342)
Q Consensus 105 ~V~~~i~-~~FV~w~~~~~s~eg~~~~~~y~v~--~--~P~l~ii~p~tG~~l~~~~G~~-~~~~~l~~L~~~ 171 (342)
+|.+-.+ ..++|.-+|.+ +.......+++. . +|.++|++. .+. -....+.+ +++.+.+-+..+
T Consensus 42 ~vAk~fk~gki~Fv~~D~~--~~~~~l~~fgl~~~~~~~P~~~i~~~-~~~-KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 42 KVAKDFPDRKLNFAVADKE--DFSHELEEFGLDFSGGEKPVVAIRTA-KGK-KYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHCcCCeEEEEEEcHH--HHHHHHHHcCCCcccCCCCEEEEEeC-CCC-ccCCCcccCCHHHHHHHHHHh
Confidence 3444555 45555554544 333477889986 4 999999985 342 22245556 777766555443
No 229
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.20 E-value=2.4 Score=38.54 Aligned_cols=88 Identities=15% Similarity=0.327 Sum_probs=60.3
Q ss_pred cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378 60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP 139 (342)
Q Consensus 60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P 139 (342)
.+.+++.| +.. .++.++++|+..|+..|..++ +|+ +.+..++ .+..+...+. .+-..+++.|.+...|
T Consensus 5 ~i~~~~~f---~~~---~~~~~~~~f~a~wa~~~~q~~-~v~--~~~~~~~-~~~~~~k~~a--~~~~eis~~~~v~~vp 72 (227)
T KOG0911|consen 5 FIVFQEQF---LDQ---KGKLLVLHFWAIWAVVQKQMD-QVF--DHLAEYF-KNAQFLKLEA--EEFPEISNLIAVEAVP 72 (227)
T ss_pred eehhHHHH---HHh---ccchhhhhhhhhhhhhhhhHH-HHH--HHHHHhh-hhheeeeehh--hhhhHHHHHHHHhcCc
Confidence 44556666 333 789999999999999999995 222 1222333 4555554333 3344578899999999
Q ss_pred EEEEEeCCCCceEEEEeCCCCh
Q 019378 140 VVLVVDPITGQKMRSWCGMVQP 161 (342)
Q Consensus 140 ~l~ii~p~tG~~l~~~~G~~~~ 161 (342)
++.++. .|+.+.++.|...+
T Consensus 73 ~~~~~~--~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 73 YFVFFF--LGEKVDRLSGADPP 92 (227)
T ss_pred eeeeee--cchhhhhhhccCcH
Confidence 999986 57888888885443
No 230
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=69.97 E-value=14 Score=29.43 Aligned_cols=56 Identities=13% Similarity=0.010 Sum_probs=41.3
Q ss_pred EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEe
Q 019378 280 NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 341 (342)
Q Consensus 280 rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w 341 (342)
.-+.++||..|-.-|..++ +..+..=+|+.. .. .| .|.+.||.+.||.+++++..|
T Consensus 20 ~V~~~~TVg~LK~lImQ~f-~V~P~dQkL~~d--G~--~L-~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 20 LVSANQTLKELKIQIMHAF-SVAPFDQNLSID--GK--IL-SDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred EeCccccHHHHHHHHHHHh-cCCcccceeeec--Cc--ee-ccCCccHHhcCCCCCCEEEEE
Confidence 3678999999999888765 334444477776 54 36 488999999999987766554
No 231
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=69.92 E-value=19 Score=26.00 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=31.9
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 145 (342)
+-+..++|..|... +++|++ .|..+.++.+. ++..+...++..++|.| +|+
T Consensus 4 ~lys~~~Cp~C~~a----------k~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~~~vP~i-fi~ 57 (72)
T cd03029 4 SLFTKPGCPFCARA----------KAALQENGISYEEIPLGKDI-TGRSLRAVTGAMTVPQV-FID 57 (72)
T ss_pred EEEECCCCHHHHHH----------HHHHHHcCCCcEEEECCCCh-hHHHHHHHhCCCCcCeE-EEC
Confidence 44556789999886 344544 45555443332 44556666788999998 454
No 232
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.74 E-value=15 Score=30.25 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEEec--------CCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHHH-----
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQS--------TKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKK----- 128 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~--------~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~~----- 128 (342)
.+|+++++.-.+..+ ++|+|.+ +||++|-.- -|-|.+-++ ++..|..+++.+.+-.+
T Consensus 13 e~~~~~~~~~~n~~~-ifvlF~gskd~~tGqSWCPdCV~A------EPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~ 85 (128)
T KOG3425|consen 13 ESFEETLKNVENGKT-IFVLFLGSKDDTTGQSWCPDCVAA------EPVINEALKHAPEDVHFVHVYVGNRPYWKDPANP 85 (128)
T ss_pred HHHHHHHHHHhCCce-EEEEEecccCCCCCCcCCchHHHh------hHHHHHHHHhCCCceEEEEEEecCCCcccCCCCc
Confidence 577788877766666 8888887 468888763 455556666 35556666665544322
Q ss_pred HHHhCC-CCCCcEEEEEe
Q 019378 129 VCTYYK-LDSIPVVLVVD 145 (342)
Q Consensus 129 ~~~~y~-v~~~P~l~ii~ 145 (342)
|-...+ +...|+++=.+
T Consensus 86 FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWK 103 (128)
T ss_pred cccCCCceeecceeeEEc
Confidence 222222 25567766555
No 233
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=68.22 E-value=0.92 Score=43.72 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=61.6
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh------HHHHHHhCCC--CCCcEEEEEe
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE------GKKVCTYYKL--DSIPVVLVVD 145 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e------g~~~~~~y~v--~~~P~l~ii~ 145 (342)
++-..+||.|.++.+-.++|+.+....|..++++.++.+++.+|.+...++. +.+....++. ...++..+++
T Consensus 7 ~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~~~~a~sp~~~~re~l~~~~~~~d~~~~s~~~ 86 (356)
T KOG1364|consen 7 RALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSSSSAAPSPIEPQREVLFDPLGIMDQSTSSILD 86 (356)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCCcccCCCcccccceeeeccccccccCcccccC
Confidence 3445678899998888899999999999999999999999999998874433 2333334433 4789999999
Q ss_pred CCCCceE
Q 019378 146 PITGQKM 152 (342)
Q Consensus 146 p~tG~~l 152 (342)
|..|...
T Consensus 87 p~~~~~~ 93 (356)
T KOG1364|consen 87 PSENQDD 93 (356)
T ss_pred cccccch
Confidence 9887543
No 234
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=67.26 E-value=6.4 Score=39.00 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=36.7
Q ss_pred HHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCC
Q 019378 51 LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE 90 (342)
Q Consensus 51 l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~ 90 (342)
=++.|||-.||+---+++||++.=.++.|||.+|+-+.++
T Consensus 333 ~eEIFGPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~n~ 372 (477)
T KOG2456|consen 333 QEEIFGPILPIITVQSLDEAINFINEREKPLALYIFSNNE 372 (477)
T ss_pred hhhhccCccceeEhhhHHHHHHHHhcCCCceEEEEecCCH
Confidence 3688999999999999999999999999999999999753
No 235
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=67.26 E-value=25 Score=24.30 Aligned_cols=50 Identities=4% Similarity=0.040 Sum_probs=29.4
Q ss_pred EEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChh--HHHHHHhCCCCCCcEEEE
Q 019378 84 NLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE--GKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 84 ~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~e--g~~~~~~y~v~~~P~l~i 143 (342)
.+..++|..|... +.+|++ +.-+..+++.... ...+....+..++|.+.+
T Consensus 4 ly~~~~Cp~C~~~----------~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 4 VFSKSTCPYCKRA----------KRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEECCCCHHHHHH----------HHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3455679999886 344443 2233344554433 334566678889998854
No 236
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=66.53 E-value=18 Score=29.04 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=36.4
Q ss_pred hccEEEEEeecCChhHHHHHHhCCCCC--CcEEEEEeCCCCceEEE-EeCCCChHHHHHHHHhhhh
Q 019378 111 STNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDPITGQKMRS-WCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 111 ~~~FV~w~~~~~s~eg~~~~~~y~v~~--~P~l~ii~p~tG~~l~~-~~G~~~~~~~l~~L~~~l~ 173 (342)
+....|.-+|.+.... .+..+++.. +|.++|++..++.. .. ..+.++++.+..-+..+++
T Consensus 47 kgki~Fv~~d~~~~~~--~~~~fgl~~~~~P~i~i~~~~~~~K-y~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 47 KGAINFLTADGDKFRH--PLLHLGKTPADLPVIAIDSFRHMYL-FPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CceEEEEEEechHhhh--HHHHcCCCHhHCCEEEEEcchhcCc-CCCCccccCHHHHHHHHHHHhc
Confidence 3344444444443333 777888865 99999999733222 22 4566788877666666554
No 237
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=66.50 E-value=19 Score=26.44 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=30.4
Q ss_pred EEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 84 NLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 84 ~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
.+..++|..|... ++++++ .|-...++.+......+....+..++|.|.|
T Consensus 3 ly~~~~Cp~C~~a----------~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 3 IYTKPYCPYCTRA----------KALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred EEecCCChhHHHH----------HHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3456789999885 344443 3444444433333345666678889999854
No 238
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=66.28 E-value=25 Score=25.37 Aligned_cols=51 Identities=2% Similarity=-0.074 Sum_probs=31.3
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
+-++.++|..|... +.+|++ .|...-++.+......+...++..++|.+.|
T Consensus 4 ~ly~~~~C~~C~ka----------~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 4 TIYSRLGCEDCTAV----------RLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEecCCChhHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 34455789999885 455554 3555543333333345667778888999954
No 239
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=66.11 E-value=24 Score=25.33 Aligned_cols=50 Identities=6% Similarity=-0.017 Sum_probs=28.8
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCC-CCcEEE
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLD-SIPVVL 142 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~-~~P~l~ 142 (342)
+.+..++|..|... +.+|++ .|...-++.+......+...++.. ++|.|.
T Consensus 3 ~ly~~~~Cp~C~~a----------k~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 3 EIYTKPNCPYCVRA----------KALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEeCCCChHHHHH----------HHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 44556789999885 344443 455544333322223455566665 899885
No 240
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=66.07 E-value=25 Score=26.59 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=30.4
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCCh--hHHHHHHhCCC--CCCcEEEEEe
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTS--EGKKVCTYYKL--DSIPVVLVVD 145 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s~--eg~~~~~~y~v--~~~P~l~ii~ 145 (342)
++.++.++|+.|.... ++|.+ ++-+.-+|++.. +...+...++- .++|.|. |+
T Consensus 2 V~vys~~~Cp~C~~ak----------~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if-i~ 64 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAK----------QLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF-VD 64 (86)
T ss_pred EEEEeCCCCccHHHHH----------HHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE-EC
Confidence 3556677999999863 34443 233334455421 22335555653 7899995 44
No 241
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=65.26 E-value=14 Score=28.56 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=31.1
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL 298 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~ 298 (342)
+.|+|-||||+++.-+-..+++...||+=+...+
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl 35 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKA 35 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHh
Confidence 5689999999999999999999999999987764
No 242
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=64.03 E-value=58 Score=27.31 Aligned_cols=92 Identities=11% Similarity=0.136 Sum_probs=58.9
Q ss_pred HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE-E--------e
Q 019378 75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV-V--------D 145 (342)
Q Consensus 75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i-i--------~ 145 (342)
..+.|.++|-|-.++...|-.++. +| ..+..-+++..++|-+|++. -..|.+.|.+. -|+-++ . |
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~mDe-iL--~~~a~~v~~~a~IY~vDi~~--Vpdfn~~yel~-dP~tvmFF~rnkhm~vD 90 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQMDE-IL--YKIAEKVKNFAVIYLVDIDE--VPDFNQMYELY-DPCTVMFFFRNKHMMVD 90 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHHHHH-HH--HHHHHHHTTTEEEEEEETTT--THCCHHHTTS--SSEEEEEEETTEEEEEE
T ss_pred ccCceEEEEEeCCCCCccHHHHHH-HH--HHHHHHhhcceEEEEEEccc--chhhhcccccC-CCeEEEEEecCeEEEEE
Confidence 567899999999999999999963 22 23455677789999999874 34466778887 675333 3 2
Q ss_pred CCCCceEEEEeCC-CChHHHHHHHHhhhh
Q 019378 146 PITGQKMRSWCGM-VQPESLLEDLVPFMD 173 (342)
Q Consensus 146 p~tG~~l~~~~G~-~~~~~~l~~L~~~l~ 173 (342)
--||.- ..|.+. .+.++|++.+..+.-
T Consensus 91 ~Gtgnn-nKin~~~~~kqe~iDiie~iyr 118 (133)
T PF02966_consen 91 FGTGNN-NKINWAFEDKQEFIDIIETIYR 118 (133)
T ss_dssp SSSSSS-SSBCS--SCHHHHHHHHHHHHH
T ss_pred ecCCCc-cEEEEEcCcHHHHHHHHHHHHH
Confidence 223321 123333 368899988776654
No 243
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=62.67 E-value=32 Score=27.70 Aligned_cols=85 Identities=8% Similarity=0.078 Sum_probs=51.3
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCC----HHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCC
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWAN----EAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSI 138 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~----~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~ 138 (342)
-..++++.+.. ....++++.++. ..+ .++... |++.+.+...+-.+.+. ......+...|++..+
T Consensus 15 d~~~ld~~l~~----~~~~vlf~~gDp----~r~-~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~ 83 (107)
T PF07449_consen 15 DADTLDAFLAA----PGDAVLFFAGDP----ARF-PETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRW 83 (107)
T ss_dssp -CCCHHHHHHC----CSCEEEEESS-T----TTS-TTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSS
T ss_pred chhhHHHHHhC----CCcEEEEECCCC----CcC-cccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccC
Confidence 35566665443 566677777742 111 111111 23333344466555433 5556779999999999
Q ss_pred cEEEEEeCCCCceEEEEeCCCC
Q 019378 139 PVVLVVDPITGQKMRSWCGMVQ 160 (342)
Q Consensus 139 P~l~ii~p~tG~~l~~~~G~~~ 160 (342)
|+++++- .|+.+..+.|.-+
T Consensus 84 PaLvf~R--~g~~lG~i~gi~d 103 (107)
T PF07449_consen 84 PALVFFR--DGRYLGAIEGIRD 103 (107)
T ss_dssp SEEEEEE--TTEEEEEEESSST
T ss_pred CeEEEEE--CCEEEEEecCeec
Confidence 9999997 6999999998654
No 244
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=62.03 E-value=13 Score=33.26 Aligned_cols=84 Identities=12% Similarity=0.234 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeC
Q 019378 67 FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 146 (342)
Q Consensus 67 ~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p 146 (342)
=.+++...++..| +++-|+.+.-+-|+.|++.. ..--..++...||=. ++ .-+.-+++.+++..+|+|+++.
T Consensus 74 Ekdf~~~~~kS~k-VVcHFY~~~f~RCKimDkhL--e~LAk~h~eTrFikv--na--e~~PFlv~kL~IkVLP~v~l~k- 145 (211)
T KOG1672|consen 74 EKDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKHL--EILAKRHVETRFIKV--NA--EKAPFLVTKLNIKVLPTVALFK- 145 (211)
T ss_pred HHHHHHHhhcCce-EEEEEEcCCCcceehHHHHH--HHHHHhcccceEEEE--ec--ccCceeeeeeeeeEeeeEEEEE-
Confidence 3455666666655 55677777788999997531 000122344456543 33 2345678899999999999997
Q ss_pred CCCceEEEEeCCC
Q 019378 147 ITGQKMRSWCGMV 159 (342)
Q Consensus 147 ~tG~~l~~~~G~~ 159 (342)
+|..+..+.|+.
T Consensus 146 -~g~~~D~iVGF~ 157 (211)
T KOG1672|consen 146 -NGKTVDYVVGFT 157 (211)
T ss_pred -cCEEEEEEeeHh
Confidence 688898998864
No 245
>PHA03050 glutaredoxin; Provisional
Probab=61.41 E-value=28 Score=27.85 Aligned_cols=54 Identities=4% Similarity=-0.032 Sum_probs=31.9
Q ss_pred CeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecC--ChhHH-HHHHhCCCCCCcEEEE
Q 019378 79 KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDD--TSEGK-KVCTYYKLDSIPVVLV 143 (342)
Q Consensus 79 K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~--s~eg~-~~~~~y~v~~~P~l~i 143 (342)
..+.| +..++|+.|... ++++++ .|-.+-++.. ..+.. .+.+..+-.++|.|.|
T Consensus 13 ~~V~v-ys~~~CPyC~~a----------k~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 13 NKVTI-FVKFTCPFCRNA----------LDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred CCEEE-EECCCChHHHHH----------HHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 34444 455679999885 455654 3545544431 22322 3556667789999954
No 246
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=60.41 E-value=32 Score=29.21 Aligned_cols=67 Identities=7% Similarity=-0.136 Sum_probs=42.4
Q ss_pred cCCeEEEEEec-CCCcchhhh-hhcccCCHHHHHHHhccE-EEEEeecCChhHHH-HHHhCCCCCCcEEEEEeC
Q 019378 77 QDKWLLVNLQS-TKEFSSHML-NRDTWANEAVSQTISTNF-IFWQVYDDTSEGKK-VCTYYKLDSIPVVLVVDP 146 (342)
Q Consensus 77 ~~K~LlV~l~~-~~~~~~~~f-~rdvl~~~~V~~~i~~~F-V~w~~~~~s~eg~~-~~~~y~v~~~P~l~ii~p 146 (342)
.+||++|+++- .+|+.|..= .... ++...++-+.++ .++++..++....+ ++..+++. .|+-++-|+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~--~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~-~~f~lLsD~ 98 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGY--VENADELKAKGVDEVICVSVNDPFVMKAWGKALGAK-DKIRFLADG 98 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHH--HHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCC-CcEEEEECC
Confidence 46777777765 578877752 2221 223344555677 59999999988776 78777662 244466665
No 247
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=58.34 E-value=58 Score=22.39 Aligned_cols=60 Identities=25% Similarity=0.265 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHc--CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 66 SFEKAKDAASVQ--DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 66 s~~eA~~~Ak~~--~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
|.++|++.|++. ++.+.+.+.... +.-.+|.+.+.+.+ ....--+-+.
T Consensus 3 s~~~A~~~A~~~~~~~~~~~~~~~~~----------------------~~~~~Y~v~~~~~~--------~~~~~~~~v~ 52 (64)
T PF03413_consen 3 SEEQAVEIALKQYPGKVISVELEEDE----------------------NGRLVYEVEVVSDD--------DPDGGEYEVY 52 (64)
T ss_dssp -HHHHHHHHHCCCCCEEEEEEEECC-----------------------TCEEEEEEEEEBTT--------STTTEEEEEE
T ss_pred CHHHHHHHHHHHCCCCEEEEEEcccc----------------------CCcEEEEEEEEEEe--------cCCCCEEEEE
Confidence 678999999888 444444443321 34456776665400 0112225666
Q ss_pred EeCCCCceEEEE
Q 019378 144 VDPITGQKMRSW 155 (342)
Q Consensus 144 i~p~tG~~l~~~ 155 (342)
||+.||+++..+
T Consensus 53 VDa~tG~Il~~~ 64 (64)
T PF03413_consen 53 VDAYTGEILSSY 64 (64)
T ss_dssp EETTT--EEEEE
T ss_pred EECCCCeEEEeC
Confidence 999999998764
No 248
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=58.08 E-value=41 Score=24.85 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=32.0
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
++-+..++|..|... +++|.+ .|...-++. ..++..+...++..++|.|.|
T Consensus 10 V~ly~~~~Cp~C~~a----------k~~L~~~gi~y~~idi~~-~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 10 VVVFTKPGCPFCAKA----------KATLKEKGYDFEEIPLGN-DARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred EEEEECCCCHhHHHH----------HHHHHHcCCCcEEEECCC-ChHHHHHHHHHCCCCcCeEEE
Confidence 445566789999986 344443 355443322 234555666778899999964
No 249
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=56.05 E-value=66 Score=31.46 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=59.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHH----HHHHhc-cEEEEEeecCChhHHHHHHhCCCCCC
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAV----SQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSI 138 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V----~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~ 138 (342)
..+|.. +.+..+.|.||+|.+-. .....-+.--..+.| .+++.+ .+=|..+|. ..-.++++++++..-
T Consensus 41 eKNfk~----~lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~--~Kd~klAKKLgv~E~ 113 (383)
T PF01216_consen 41 EKNFKR----ALKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDS--KKDAKLAKKLGVEEE 113 (383)
T ss_dssp TTTHHH----HHHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEET--TTTHHHHHHHT--ST
T ss_pred hhHHHH----HHHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEecc--HHHHHHHHhcCcccc
Confidence 455655 45677999999999743 222222221122223 334443 455555444 445679999999999
Q ss_pred cEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 139 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 139 P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
++|.|.. .|+++ -..|..+++.|++.|...++
T Consensus 114 ~SiyVfk--d~~~I-EydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 114 GSIYVFK--DGEVI-EYDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp TEEEEEE--TTEEE-EE-S--SHHHHHHHHHHHHS
T ss_pred CcEEEEE--CCcEE-EecCccCHHHHHHHHHHhcc
Confidence 9999987 47766 45599999999999998887
No 250
>PRK10824 glutaredoxin-4; Provisional
Probab=55.25 E-value=50 Score=26.88 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHH-HHHhCCCCCC
Q 019378 67 FEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKK-VCTYYKLDSI 138 (342)
Q Consensus 67 ~~eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~-~~~~y~v~~~ 138 (342)
..+.++..-++ .+++|+..+ ++|+.|.... ++|++ .|-.+-++.+ ++... +.+.-+..++
T Consensus 4 ~~~~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak----------~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TV 71 (115)
T PRK10824 4 TIEKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAV----------QALSACGERFAYVDILQN-PDIRAELPKYANWPTF 71 (115)
T ss_pred HHHHHHHHHhc-CCEEEEECCCCCCCCCchHHHHH----------HHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCC
Confidence 34445555555 556677776 5899999863 34432 4544444333 33332 4445577899
Q ss_pred cEEEEEeCCCCceE
Q 019378 139 PVVLVVDPITGQKM 152 (342)
Q Consensus 139 P~l~ii~p~tG~~l 152 (342)
|.|.| +|+.+
T Consensus 72 PQIFI----~G~~I 81 (115)
T PRK10824 72 PQLWV----DGELV 81 (115)
T ss_pred CeEEE----CCEEE
Confidence 99986 56644
No 251
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=54.81 E-value=54 Score=24.43 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=29.9
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCC--hhHHHHHHhCC--CCCCcEEEE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDT--SEGKKVCTYYK--LDSIPVVLV 143 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s--~eg~~~~~~y~--v~~~P~l~i 143 (342)
++.+..++|..|.... ++|++ ++-+-.+|++. .+...+...++ +.++|.|.|
T Consensus 3 v~iy~~~~C~~C~~a~----------~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi 64 (85)
T PRK11200 3 VVIFGRPGCPYCVRAK----------ELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV 64 (85)
T ss_pred EEEEeCCCChhHHHHH----------HHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE
Confidence 4566778899999863 44443 33333344543 22334544444 478999873
No 252
>PRK10329 glutaredoxin-like protein; Provisional
Probab=53.75 E-value=60 Score=24.36 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=39.5
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecC-ChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCC
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDD-TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 160 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~-s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~ 160 (342)
+-+..++|..|+.. +.+|.+ ++-+-.++++ .+++.......+..++|.+.+ + + ..|.| .+
T Consensus 4 ~lYt~~~Cp~C~~a----------k~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~---~---~~~~G-f~ 65 (81)
T PRK10329 4 TIYTRNDCVQCHAT----------KRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA-G---D---LSWSG-FR 65 (81)
T ss_pred EEEeCCCCHhHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE-C---C---EEEec-CC
Confidence 34456789999885 455554 2222233554 344555555567889999964 3 2 24666 56
Q ss_pred hHHHHHH
Q 019378 161 PESLLED 167 (342)
Q Consensus 161 ~~~~l~~ 167 (342)
++.+...
T Consensus 66 ~~~l~~~ 72 (81)
T PRK10329 66 PDMINRL 72 (81)
T ss_pred HHHHHHH
Confidence 6666543
No 253
>PRK10638 glutaredoxin 3; Provisional
Probab=52.90 E-value=53 Score=24.40 Aligned_cols=51 Identities=8% Similarity=0.103 Sum_probs=29.8
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
+.+..++|..|+.. +.+|++ .|...-++.+......+.+..+..++|.|.+
T Consensus 5 ~ly~~~~Cp~C~~a----------~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 5 EIYTKATCPFCHRA----------KALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEECCCChhHHHH----------HHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 34456789999885 445554 3554433322222334666778889998843
No 254
>PTZ00062 glutaredoxin; Provisional
Probab=52.79 E-value=47 Score=29.91 Aligned_cols=88 Identities=7% Similarity=0.147 Sum_probs=50.1
Q ss_pred chhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEE
Q 019378 45 DSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFW 117 (342)
Q Consensus 45 ~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w 117 (342)
+.-...+...++++- .....+-++..- ..++++|+..+ ++|..|+.. +++|++ .|..+
T Consensus 84 ~~~~~~~~~~~~~~~----~~~~~~~v~~li-~~~~Vvvf~Kg~~~~p~C~~C~~~----------k~~L~~~~i~y~~~ 148 (204)
T PTZ00062 84 STLVSFIRGWAQKGS----SEDTVEKIERLI-RNHKILLFMKGSKTFPFCRFSNAV----------VNMLNSSGVKYETY 148 (204)
T ss_pred HHHHHHHHHHcCCCC----HHHHHHHHHHHH-hcCCEEEEEccCCCCCCChhHHHH----------HHHHHHcCCCEEEE
Confidence 344555666666542 122444444444 44778888886 578877774 566665 45544
Q ss_pred EeecCChhHHH-HHHhCCCCCCcEEEEEeCCCCceE
Q 019378 118 QVYDDTSEGKK-VCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 118 ~~~~~s~eg~~-~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
-++. +.++.. +.+..+..++|.|.| +|+.+
T Consensus 149 DI~~-d~~~~~~l~~~sg~~TvPqVfI----~G~~I 179 (204)
T PTZ00062 149 NIFE-DPDLREELKVYSNWPTYPQLYV----NGELI 179 (204)
T ss_pred EcCC-CHHHHHHHHHHhCCCCCCeEEE----CCEEE
Confidence 3332 344444 444556788999985 46643
No 255
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=52.30 E-value=1.2e+02 Score=27.19 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 137 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 137 ~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.-..+++|+| .|..+..+.+...+++++..|...+.
T Consensus 170 Hs~~~~lid~-~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 170 HSAGFYLIDA-DGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred eeeEEEEECC-CCeEEEEecCCCChHHHHHHHHHHhh
Confidence 3467888998 68999888877779999999988775
No 256
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=51.72 E-value=47 Score=33.75 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=54.0
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..++|.||.|++ +..-.-..+.+|..+-+-|.... +.....-+|+.. .|. | ..+.||...|+. +-+|+++
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f-~a~~dqlvLIfa--GrI--L--KD~dTL~~~gI~Dg~TvHLV 84 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRF-GAPPDQLVLIYA--GRI--L--KDDDTLKQYGIQDGHTVHLV 84 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhc-CCChhHeeeeec--Ccc--c--cChhhHHHcCCCCCcEEEEE
Confidence 569999999999 56666778889999988887764 556667777754 554 5 468999999998 6777665
No 257
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=49.74 E-value=73 Score=24.46 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=40.4
Q ss_pred cCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHH
Q 019378 101 WANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 165 (342)
Q Consensus 101 l~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l 165 (342)
+.+..+.+++...++.+..+..-.++..+...++...++.+.+++. .|..+ |.++..+++
T Consensus 58 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~----Gvvs~~di~ 117 (119)
T cd04598 58 YGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYL----GIGTVKDLL 117 (119)
T ss_pred HcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEE----EEEEHHHHh
Confidence 3455688888888888876666677777777776655555556764 45544 666666654
No 258
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.48 E-value=40 Score=30.27 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeC--CCChHHHHHHHHhhhh
Q 019378 126 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG--MVQPESLLEDLVPFMD 173 (342)
Q Consensus 126 g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G--~~~~~~~l~~L~~~l~ 173 (342)
++.+++.+++.+||++++.+ +|+.-..-.| +.+++.++..|.+.+-
T Consensus 163 ~r~l~~rlg~~GfPTl~le~--ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 163 SRRLMQRLGAAGFPTLALER--NGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHHhccCCCCeeeeee--CCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 46788999999999999998 5653222346 5688999988876653
No 259
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=48.08 E-value=59 Score=23.37 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=35.9
Q ss_pred EEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecC-ChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCC
Q 019378 84 NLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDD-TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 159 (342)
Q Consensus 84 ~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~-s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~ 159 (342)
.++.++|..|+.. +++|.+ .|..+ +++ .++........+..++|.+.+ + |. ..|.| .
T Consensus 3 ly~~~~Cp~C~~a----------k~~L~~~~i~~~~~--di~~~~~~~~~~~~~g~~~vP~v~~-~---g~--~~~~G-~ 63 (72)
T TIGR02194 3 VYSKNNCVQCKMT----------KKALEEHGIAFEEI--NIDEQPEAIDYVKAQGFRQVPVIVA-D---GD--LSWSG-F 63 (72)
T ss_pred EEeCCCCHHHHHH----------HHHHHHCCCceEEE--ECCCCHHHHHHHHHcCCcccCEEEE-C---CC--cEEec-c
Confidence 3455679999885 455554 34444 443 234444444457789999854 3 32 14656 5
Q ss_pred ChHHHH
Q 019378 160 QPESLL 165 (342)
Q Consensus 160 ~~~~~l 165 (342)
+++.+.
T Consensus 64 ~~~~~~ 69 (72)
T TIGR02194 64 RPDKLK 69 (72)
T ss_pred CHHHHH
Confidence 666553
No 260
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=46.84 E-value=35 Score=22.90 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=38.1
Q ss_pred HHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378 106 VSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 106 V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~ 169 (342)
|.+++..++++..-+..-.++......++ +.++.|+|. .|+.+ |.++..+++..|.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~---~~~~~V~d~-~~~~~----G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNG---ISRLPVVDE-DGKLV----GIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHT---SSEEEEEST-TSBEE----EEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcC---CcEEEEEec-CCEEE----EEEEHHHHHhhhh
Confidence 45677778888876666667766666664 677778875 46654 6667777776553
No 261
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=46.58 E-value=34 Score=24.13 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=21.2
Q ss_pred CCeeEEEEE-CCCCceEEEEeCCCCch
Q 019378 262 SLLCRVGVR-LPDGRRMQRNFLRTDPI 287 (342)
Q Consensus 262 ~~~~~i~iR-lP~G~r~~rrF~~~~~l 287 (342)
...+++.+| +-+|+.+.++|.++|++
T Consensus 32 ~a~v~~klknl~tG~~~e~tf~s~d~v 58 (58)
T PF08207_consen 32 GAFVRVKLKNLRTGSKVEKTFRSGDKV 58 (58)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETT-EE
T ss_pred CeEEEEEEEECCCCCEEEEEECCCCcC
Confidence 567777777 89999999999999874
No 262
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=46.34 E-value=66 Score=30.47 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=64.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
...|.+.+..-++...-+..-+.++.|..+.. .-+++.++..+ ..++.-+..+|+...+|.+.-+-..-|++.
T Consensus 167 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~------RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~ 240 (281)
T PF02401_consen 167 VEKFEEIVEALKKRFPELEGPVFNTICYATQN------RQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYH 240 (281)
T ss_dssp HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHH------HHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHHHHhCccccCCCCCCCCHhHHH------HHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEE
Confidence 44566666666777666665566666655443 23467777765 688888899998888876554444457777
Q ss_pred EEeCC--------CCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 143 VVDPI--------TGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 143 ii~p~--------tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
|=++. ..+.+....|..+|+.+++.+...|.
T Consensus 241 Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 241 IETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLE 279 (281)
T ss_dssp ESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred eCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHh
Confidence 74432 12367888899999999998887775
No 263
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=43.93 E-value=32 Score=27.49 Aligned_cols=61 Identities=11% Similarity=0.210 Sum_probs=39.9
Q ss_pred CeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhC----CCCCCcEEEEEeCCCCceE
Q 019378 79 KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY----KLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 79 K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y----~v~~~P~l~ii~p~tG~~l 152 (342)
.+++|+- -++|..|+.+ +.+|.+ +.-++.++.+|.. ++|.++-..+ +..++|.|.| .|+.+
T Consensus 14 ~~VVifS-Ks~C~~c~~~-k~ll~~------~~v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP~vFI----~Gk~i 78 (104)
T KOG1752|consen 14 NPVVIFS-KSSCPYCHRA-KELLSD------LGVNPKVVELDED-EDGSEIQKALKKLTGQRTVPNVFI----GGKFI 78 (104)
T ss_pred CCEEEEE-CCcCchHHHH-HHHHHh------CCCCCEEEEccCC-CCcHHHHHHHHHhcCCCCCCEEEE----CCEEE
Confidence 4454444 4789999996 455555 5557888887776 6666654433 3468999987 45544
No 264
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=41.93 E-value=86 Score=30.33 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=50.7
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCC--CCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEG--SEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~--~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
+|-||.=.|.++.-++..+++|..|..-|.+. .| |+...=.|+.+ ++. | ..++|+.+.++. +.-|+|
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~-~g~dyP~~~QkLIy~--Gki--L--~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETE-KGPDYPAEQQKLIYS--GKI--L--KDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhc-cCCCCchhhheeeec--cee--c--cCCcchhhhccccCceEEE
Confidence 57888889999999999999999999999874 34 44444456554 443 4 669999999998 444433
No 265
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=41.72 E-value=27 Score=31.84 Aligned_cols=113 Identities=13% Similarity=0.234 Sum_probs=62.2
Q ss_pred hCCCCcCccc----ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHH
Q 019378 55 YRPPFHLMFN----GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC 130 (342)
Q Consensus 55 f~pp~~~~f~----gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~ 130 (342)
|||.+...|. ..|-+++..-.+ .-.|+|-|+-+...-|..||+-+-|=.. ++-.-.|+=.. ... ...+
T Consensus 133 ~gp~~~~V~El~~gkqfld~idke~k-s~~i~VhIYEdgi~gcealn~~~~cLAA--eyP~vKFckik--ss~---~gas 204 (273)
T KOG3171|consen 133 FGPRYGFVYELETGKQFLDTIDKELK-STTIVVHIYEDGIKGCEALNSSLTCLAA--EYPIVKFCKIK--SSN---TGAS 204 (273)
T ss_pred cCCccceEEEeccchhHHHHHhcccc-eEEEEEEEecCCCchHHHHhhhHHHhhc--cCCceeEEEee--ecc---ccch
Confidence 3566544442 345555543221 2345666777888899999865432111 01111232222 111 1234
Q ss_pred HhCCCCCCcEEEEEeCCCCceEEEEeC---CCChHHHHHHHHhhhhcCCC
Q 019378 131 TYYKLDSIPVVLVVDPITGQKMRSWCG---MVQPESLLEDLVPFMDGGPR 177 (342)
Q Consensus 131 ~~y~v~~~P~l~ii~p~tG~~l~~~~G---~~~~~~~l~~L~~~l~~~~~ 177 (342)
..|....+|+++|.. +|+++..+.. -..-+-|...|..||..+.+
T Consensus 205 ~~F~~n~lP~LliYk--gGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 205 DRFSLNVLPTLLIYK--GGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred hhhcccCCceEEEee--CCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 567788999999997 6887643221 12334566788899987755
No 266
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=38.38 E-value=1.3e+02 Score=22.66 Aligned_cols=95 Identities=17% Similarity=0.269 Sum_probs=48.1
Q ss_pred cccHHHHHHHHHHcCC-----eEEEEEecCCCcchhhhhhccc---CCHHHHHHHhccEEEEEeecCChhHHHHHHhCCC
Q 019378 64 NGSFEKAKDAASVQDK-----WLLVNLQSTKEFSSHMLNRDTW---ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKL 135 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K-----~LlV~l~~~~~~~~~~f~rdvl---~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v 135 (342)
..++.+|++...+.+. ..++.+.+...+---.-.++++ .+..+.++++.+++.+..+..-.++.......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 82 (109)
T cd04606 5 DWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLADPDTPVSDIMDTDVISVSADDDQEEVARLFEKY-- 82 (109)
T ss_pred cCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCCCcchHHHHhCCCCeEEcCCCCHHHHHHHHHHc--
Confidence 3477888877665441 2222222223321111112222 23457888887776665444444555554444
Q ss_pred CCCcEEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378 136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
..+.+.|++. .|+. .|.++..+++.
T Consensus 83 -~~~~~~Vv~~-~~~~----~Gvit~~dll~ 107 (109)
T cd04606 83 -DLLALPVVDE-EGRL----VGIITVDDVID 107 (109)
T ss_pred -CCceeeeECC-CCcE----EEEEEhHHhhh
Confidence 4456677774 4554 45556666654
No 267
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=37.27 E-value=1.7e+02 Score=21.74 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=38.6
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecCCh-hHHHHHHhC-CCCCCcEEEEEeCCCCceEEEEeC
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTS-EGKKVCTYY-KLDSIPVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~s~-eg~~~~~~y-~v~~~P~l~ii~p~tG~~l~~~~G 157 (342)
+.+.-++|+.|..- +++|.+. |...-++.+.. +........ +..++|.|.| +|+ .+-|
T Consensus 4 ~iyt~~~CPyC~~a----------k~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i----~~~---~igg 66 (80)
T COG0695 4 TIYTKPGCPYCKRA----------KRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI----GGK---HVGG 66 (80)
T ss_pred EEEECCCCchHHHH----------HHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE----CCE---EEeC
Confidence 34455679999985 4566553 43333333332 344455555 7899999986 233 2445
Q ss_pred CCChHHHHH
Q 019378 158 MVQPESLLE 166 (342)
Q Consensus 158 ~~~~~~~l~ 166 (342)
..+++.+..
T Consensus 67 ~~d~~~~~~ 75 (80)
T COG0695 67 CDDLDALEA 75 (80)
T ss_pred cccHHHHHh
Confidence 566666643
No 268
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=37.19 E-value=27 Score=35.73 Aligned_cols=44 Identities=7% Similarity=0.057 Sum_probs=38.5
Q ss_pred HHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCc
Q 019378 48 RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEF 91 (342)
Q Consensus 48 ~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~ 91 (342)
.-.-++.|||-.+++--.++++|++.+....++|-.|+.+.+..
T Consensus 336 ~i~~eEiFGPVl~v~~~~~~deAi~~~n~~~~gLa~~vft~d~~ 379 (493)
T PTZ00381 336 PLMQEEIFGPILPILTYENIDEVLEFINSRPKPLALYYFGEDKR 379 (493)
T ss_pred hHHhccccCCeEEEEeeCCHHHHHHHHhcCCCCceEEEECCCHH
Confidence 44567889999999989999999999999999999999997643
No 269
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=37.11 E-value=1.4e+02 Score=23.23 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=31.1
Q ss_pred eEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHH----HHhCCCCCCcEEEEEe
Q 019378 80 WLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKV----CTYYKLDSIPVVLVVD 145 (342)
Q Consensus 80 ~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~----~~~y~v~~~P~l~ii~ 145 (342)
++.|| ..++|+.|.... +++++ .|-.+-++. .+++..+ ....+..++|.|. |+
T Consensus 9 ~Vvvy-sk~~Cp~C~~ak----------~~L~~~~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~Vf-i~ 68 (99)
T TIGR02189 9 AVVIF-SRSSCCMCHVVK----------RLLLTLGVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAVF-VG 68 (99)
T ss_pred CEEEE-ECCCCHHHHHHH----------HHHHHcCCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeEE-EC
Confidence 34444 447899999874 35544 354444332 3444443 3445678999984 44
No 270
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=36.97 E-value=2e+02 Score=22.35 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 145 (342)
+.+++-..-......++-||.+.....-..|. .|.+.+++.|.|+.... ..++..|++ .|.++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~-------~vA~~~R~d~~F~~~~~-----~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDSKLLSEFL-------KAADTLRESFRFAHTSD-----KQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCchHHHHHH-------HHHHhhhhcCEEEEECh-----HHHHHhcCC--CCceEEEe
Confidence 34444443445556666677775544445552 57778888888864222 245667777 68888886
Q ss_pred CC----CC-ceEEEEeCCCChHHHHHHH
Q 019378 146 PI----TG-QKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 146 p~----tG-~~l~~~~G~~~~~~~l~~L 168 (342)
|. .- +......|..+.+.+...|
T Consensus 73 p~~~~~k~de~~~~y~g~~~~~~l~~fi 100 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGDLDSSKIKKFI 100 (104)
T ss_pred chhhhcccCcccccccCcCCHHHHHHHH
Confidence 62 11 1122357777766655443
No 271
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=36.15 E-value=1.3e+02 Score=28.88 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=66.1
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
....|.+.+...++...=+-|...++-|..+.. .-+++.++.++ ..++.-+..+|+...+|.+...-..-|++
T Consensus 167 ~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~------RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~ 240 (298)
T PRK01045 167 SVDDTAEIIAALKERFPEIQGPPKDDICYATQN------RQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAY 240 (298)
T ss_pred cHHHHHHHHHHHHHhCcCcccCCCCCcchhhHH------HHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEE
Confidence 344555556655554433333224554443332 22467777764 68888888888888877655444345666
Q ss_pred EEEeCC--------CCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 142 LVVDPI--------TGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 142 ~ii~p~--------tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
.|=++. .-..+....|..+|+.+++.+...|...
T Consensus 241 ~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~~ 282 (298)
T PRK01045 241 LIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKEL 282 (298)
T ss_pred EECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 653221 1235777889999999999999888764
No 272
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=92 Score=22.41 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=50.3
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 338 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~ 338 (342)
.|.+++-.|+.+.-..-.+|+|..+-+-|+.+ +|.++..-+|+.. .+. ...++|-++.++..++|+
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEk-eGIPp~qqrli~~--gkq----m~DD~tA~~Y~~~~GSVl 67 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-EGIPPQQQRLIYA--GKQ----MNDDKTAAHYNLLGGSVL 67 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhh-cCCCchhhhhhhc--ccc----ccccccHHHhhhccceeE
Confidence 46778889999999999999999999999886 4666655566533 332 356899999998866553
No 273
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=35.71 E-value=2.2e+02 Score=28.22 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 67 FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 67 ~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.-++++.||.+||...|=|.. |.+...|.+-|.+.+ -+|++- ||+.|. +..-.+|.++|...+.. |.|+
T Consensus 132 ~~df~~kak~eGkIr~~GFSf--Hgs~e~~~~iv~a~~--~dfvqlq~ny~d~~-n~~~~~~l~~A~~~~~g----I~IM 202 (391)
T COG1453 132 VFDFLEKAKAEGKIRNAGFSF--HGSTEVFKEIVDAYP--WDFVQLQYNYIDQK-NQAGTEGLKYAASKGLG----IFIM 202 (391)
T ss_pred hHHHHHHHHhcCcEEEeeecC--CCCHHHHHHHHhcCC--cceEEeeeeeeccc-hhcccHHHHHHHhCCCc----EEEE
Confidence 467889999999977776655 344455543333333 233321 333333 12225888888887553 4566
Q ss_pred eCCCC
Q 019378 145 DPITG 149 (342)
Q Consensus 145 ~p~tG 149 (342)
.|..|
T Consensus 203 eP~~g 207 (391)
T COG1453 203 EPLDG 207 (391)
T ss_pred eeCCC
Confidence 66544
No 274
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=34.36 E-value=1.3e+02 Score=22.26 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=34.9
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec
Q 019378 267 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA 311 (342)
Q Consensus 267 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~ 311 (342)
+.+-||||++..=.-....||.++.+=+-.+ .++.+..+.|...
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~k-r~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKK-RGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHH-cCCCHHHEEEEEe
Confidence 5677999999999999999999998876554 4677777776643
No 275
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=32.87 E-value=1.2e+02 Score=25.86 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=27.5
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~ 169 (342)
..+..+++.++|+++| +|+ ..+.|....+.|...|+
T Consensus 158 ~~a~~~gv~GvP~~vv----~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 158 AEARQLGVFGVPTFVV----NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHTTCSSSSEEEE----TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHHcCCcccCEEEE----CCE--EEEECCCCHHHHHHHhC
Confidence 3467899999999998 456 56889888888776553
No 276
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=32.59 E-value=82 Score=25.37 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=29.6
Q ss_pred HHHhCCCCCCcEEEEEeCCC----------CceEEEEeCCCChHHHHHHH
Q 019378 129 VCTYYKLDSIPVVLVVDPIT----------GQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~t----------G~~l~~~~G~~~~~~~l~~L 168 (342)
+-+.|+++..|++++..+.. .+....+.|.++...-|+.+
T Consensus 63 ~F~~y~I~~VPa~V~~~~~~~~~~~~~~~~~~~~~~~~Gdvsl~~aLe~i 112 (113)
T PF09673_consen 63 LFRQYNITAVPAFVVVKDRVCVCLSCGCCSPEDYDVVYGDVSLDYALEKI 112 (113)
T ss_pred HHhhCCceEcCEEEEEcCcccccccCCcCCCCcceEEEccccHHHHHHhh
Confidence 45689999999999998721 12356788888887777654
No 277
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=31.49 E-value=2.8e+02 Score=22.38 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=29.6
Q ss_pred HHHHHhCCCCCC-cEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378 127 KKVCTYYKLDSI-PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 176 (342)
Q Consensus 127 ~~~~~~y~v~~~-P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~~ 176 (342)
..+.+.|++..- -.+++|+. .|.+-.++.+.++++++.. .++..|
T Consensus 67 ~~lr~~l~~~~~~f~~vLiGK-DG~vK~r~~~p~~~~~lf~----~ID~MP 112 (118)
T PF13778_consen 67 QALRKRLRIPPGGFTVVLIGK-DGGVKLRWPEPIDPEELFD----TIDAMP 112 (118)
T ss_pred HHHHHHhCCCCCceEEEEEeC-CCcEEEecCCCCCHHHHHH----HHhCCc
Confidence 467888987543 34555664 6665556788889988865 455443
No 278
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=30.65 E-value=1.2e+02 Score=25.06 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 124 SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 124 ~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
....+.+..+++.+.|+++| +|+.+ .|..+.++|.+.|.+
T Consensus 123 ~~~~~~~~~~~i~~tPt~~i----nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 123 EADSQLARQLGITGTPTFFI----NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHHHHT-SSSSEEEE----TTCEE---ETTTSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccccEEEE----CCEEe---CCCCCHHHHHHHHcC
No 279
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=30.62 E-value=2.5e+02 Score=21.65 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=42.3
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCC
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGA 315 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~ 315 (342)
.-|+|-++||+..+--...+.|.+++-+-+..+..-.+...+.|+-.+|--
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l 53 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHL 53 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchh
Confidence 357888999999999999999999999998776544456789999887753
No 280
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=30.50 E-value=39 Score=33.57 Aligned_cols=48 Identities=6% Similarity=-0.090 Sum_probs=39.6
Q ss_pred HHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhh
Q 019378 49 DNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHML 96 (342)
Q Consensus 49 ~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f 96 (342)
-.-++.|+|-.+++--.++++|++.|-.....|=.++++.+......+
T Consensus 302 i~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GLsa~ift~d~~~a~~~ 349 (406)
T cd07079 302 DWGTEYLDLILAVKVVDSLDEAIAHINRYGSGHTEAIVTENYETAERF 349 (406)
T ss_pred hhhhhhhCceeEEEEeCCHHHHHHHHHHhCCccccEeeeCCHHHHHHH
Confidence 345789999999988899999999999999999999998765444443
No 281
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=30.02 E-value=1.1e+02 Score=24.66 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=25.9
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
+.+..+++.++|+++| +|+ .+.|..+.+.|...|
T Consensus 120 ~~~~~~gi~gtPt~~v----~g~---~~~G~~~~~~l~~~i 153 (154)
T cd03023 120 QLARALGITGTPAFII----GDT---VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHcCCCcCCeEEE----CCE---EecCCCCHHHHHHHh
Confidence 4567889999999776 254 578988888887654
No 282
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=29.85 E-value=1.4e+02 Score=21.86 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=32.2
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEe
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTH 310 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~ 310 (342)
.+++-||||++..-.-....+|+++..-+-.. .+.....+.+..
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~k-r~L~~~~~~V~~ 45 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKK-RGLNPECCDVRL 45 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHT-TT--CCCEEEEE
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHH-cCCCHHHEEEEE
Confidence 36788999999999999999999988876554 355566666653
No 283
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=29.62 E-value=1.6e+02 Score=24.49 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=31.6
Q ss_pred cEEEEEeec---CChhHHHHHHhCCC--CCCcEEEEEeCCCCceEEEE--eCCCChHHHHHHH
Q 019378 113 NFIFWQVYD---DTSEGKKVCTYYKL--DSIPVVLVVDPITGQKMRSW--CGMVQPESLLEDL 168 (342)
Q Consensus 113 ~FV~w~~~~---~s~eg~~~~~~y~v--~~~P~l~ii~p~tG~~l~~~--~G~~~~~~~l~~L 168 (342)
+.++-.+-+ ...+...+++.|++ ..||.+.+.-. ..+---.. .|.++.+.+...+
T Consensus 54 dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~-~~~~pv~~p~~~~~t~~~l~~fv 115 (126)
T PF07912_consen 54 DLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVG-DKEEPVRYPFDGDVTADNLQRFV 115 (126)
T ss_dssp SEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEES-STTSEEEE-TCS-S-HHHHHHHH
T ss_pred ceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecC-CCCCCccCCccCCccHHHHHHHH
Confidence 455555544 34566789999999 67999998773 33322234 6778887765443
No 284
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=29.09 E-value=2.1e+02 Score=27.11 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=49.9
Q ss_pred HHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCC--------CCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 104 EAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI--------TGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 104 ~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~--------tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+++.++..+ ..++.-+..+|+...+|.+.-.-..-|++.|=++. ..+.+....|..+|+.+++.+...|.
T Consensus 200 ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~ 278 (280)
T TIGR00216 200 DAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIK 278 (280)
T ss_pred HHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 467777764 67788788888888887665544455777663321 12357788899999999998887775
No 285
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.67 E-value=2.1e+02 Score=27.15 Aligned_cols=103 Identities=10% Similarity=0.093 Sum_probs=62.7
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
....|.+.+...++...=+.+ .++-|..+.. .-+++.++-.. ..++.-+..+|+...+|.+.-.-..-|+.
T Consensus 168 ~~~~~~~iv~~l~~~~~~~~v--~~TIC~aT~~------RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~ 239 (281)
T PRK12360 168 IPELWEDILNVIKLKSKELVF--FNTICSATKK------RQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTF 239 (281)
T ss_pred cHHHHHHHHHHHHHhCccccc--CCCcchhhhh------HHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEE
Confidence 344566666655655444432 3444433322 23457777754 67777778888888877654433344566
Q ss_pred EEEeCC-------C-CceEEEEeCCCChHHHHHHHHhhhh
Q 019378 142 LVVDPI-------T-GQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 142 ~ii~p~-------t-G~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.|=++. . -..+....|..+|+.+++.+...|.
T Consensus 240 ~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~ 279 (281)
T PRK12360 240 HIETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIK 279 (281)
T ss_pred EECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 653321 1 1357778899999999998887775
No 286
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=27.65 E-value=94 Score=25.91 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=26.1
Q ss_pred CCCCCCCCeeEEEEE-CCCCceEEEEeCCCCchHHH
Q 019378 256 EPKVDRSLLCRVGVR-LPDGRRMQRNFLRTDPIQLL 290 (342)
Q Consensus 256 EP~~~~~~~~~i~iR-lP~G~r~~rrF~~~~~l~~l 290 (342)
-|..+.. .+++.++ +-+|+.+..+|..+++|...
T Consensus 31 KpGKg~a-~vrvk~k~l~tG~~~e~~f~~~~kve~a 65 (131)
T COG0231 31 KPGKGGA-FVRVKLKNLFTGKKVEKTFKADDKVEVA 65 (131)
T ss_pred cCCCCCc-EEEEEEEEccCCCEEEEEEcCCCEEEEe
Confidence 3555544 6666666 89999999999999998653
No 287
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=27.33 E-value=50 Score=33.77 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=40.9
Q ss_pred HHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhh
Q 019378 48 RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHML 96 (342)
Q Consensus 48 ~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f 96 (342)
.-.-++.|||-.+++--.+.++|++.|......|-.|+.+.+......+
T Consensus 342 ~i~~eEiFGPVl~v~~~~~~~eai~~aN~~~~gLaa~vft~d~~~a~~~ 390 (484)
T PLN02174 342 LIMSEEIFGPLLPILTLNNLEESFDVIRSRPKPLAAYLFTHNKKLKERF 390 (484)
T ss_pred hhhcCCcCCCeEEEecCCCHHHHHHHHhCCCCCeEEEEEcCCHHHHHHH
Confidence 3355789999999999999999999999999999999999765444444
No 288
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=26.78 E-value=3.8e+02 Score=22.37 Aligned_cols=60 Identities=15% Similarity=0.303 Sum_probs=40.4
Q ss_pred HHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC-CChHHHHHHHHhh
Q 019378 105 AVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM-VQPESLLEDLVPF 171 (342)
Q Consensus 105 ~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~-~~~~~~l~~L~~~ 171 (342)
++.+-+.+++.|+.+. + ..++..|++.. |.|++..+ .++......|. .+.+.+...|...
T Consensus 14 ~~A~~~~~~~~F~~~~--~---~~~~~~~~~~~-p~i~~~k~-~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 14 EAAEKLKGDYQFGVTF--N---EELAKKYGIKE-PTIVVYKK-FDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEEC-TTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHhCcCCcEEEEEc--H---HHHHHHhCCCC-CcEEEecc-CCCCceecccccCCHHHHHHHHHHh
Confidence 4555566666666543 2 23677799988 99999986 33455577886 7888887665543
No 289
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=26.68 E-value=3.1e+02 Score=21.32 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=50.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCc----chhhhhh-----------cccCCHHHHHHHhccEEEEEeec---CChh
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEF----SSHMLNR-----------DTWANEAVSQTISTNFIFWQVYD---DTSE 125 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~----~~~~f~r-----------dvl~~~~V~~~i~~~FV~w~~~~---~s~e 125 (342)
..+..+|+..-...+...++.+.+.+.+ .-..+.+ ..+.+..|.++++.+++....+. ....
T Consensus 9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~ 88 (126)
T cd04640 9 DTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLEELENAS 88 (126)
T ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHHHhccCc
Confidence 4578888877765554455555443321 1111111 12344457788877665443221 1222
Q ss_pred HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHH
Q 019378 126 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 165 (342)
Q Consensus 126 g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l 165 (342)
.......+.-...+++.|++-..|.+ .|.++..+++
T Consensus 89 l~~~l~~m~~~~~~~lpVvd~~~~~~----~G~it~~di~ 124 (126)
T cd04640 89 VGDVVETLKASGRQHALVVDREHHQI----RGIISTSDIA 124 (126)
T ss_pred HHHHHHHHHHCCCceEEEEECCCCEE----EEEEeHHHHh
Confidence 23334444445678888888421343 3666666664
No 290
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=26.58 E-value=1.3e+02 Score=25.07 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=30.3
Q ss_pred HHHhCCCCCCcEEEEEeCCC---C------ceEEEEeCCCChHHHHHHHH
Q 019378 129 VCTYYKLDSIPVVLVVDPIT---G------QKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~t---G------~~l~~~~G~~~~~~~l~~L~ 169 (342)
+-+.|+|+..|+++++.+.. + .--.++.|.++.+.-|+.+.
T Consensus 63 lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 63 WFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred HHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 45689999999999998531 0 12567889998888776554
No 291
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=26.49 E-value=43 Score=36.02 Aligned_cols=48 Identities=6% Similarity=-0.111 Sum_probs=41.1
Q ss_pred HHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhh
Q 019378 50 NLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLN 97 (342)
Q Consensus 50 ~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~ 97 (342)
.-++.|+|-.+++--.++++|++.|......|-.|+++.+...+..|.
T Consensus 588 ~~eE~FGPvl~v~~~~~~deAi~~~N~~~~gLa~~ift~d~~~a~~~~ 635 (715)
T TIGR01092 588 FRTEYSSLACTVEIVDDVYDAIDHIHKHGSAHTDCIVTEDENVAEFFL 635 (715)
T ss_pred hhccccCceEEEEEECCHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHH
Confidence 447889999999888999999999999999999999998765555553
No 292
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=26.25 E-value=49 Score=32.98 Aligned_cols=46 Identities=4% Similarity=-0.093 Sum_probs=38.3
Q ss_pred HHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhh
Q 019378 51 LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHML 96 (342)
Q Consensus 51 l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f 96 (342)
-++.|||-.+++--.++++|++.|-.....|-.++++.+....+.|
T Consensus 310 ~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~V~t~d~~~~~~~ 355 (417)
T PRK00197 310 DTEYLDLILAVKVVDSLDEAIAHINRYGSGHTEAIVTEDYAAAERF 355 (417)
T ss_pred hhhhhCceEEEEEeCCHHHHHHHHHhcCCCCceEEEeCCHHHHHHH
Confidence 5788999999988899999999999999999999999764444443
No 293
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=25.15 E-value=43 Score=26.05 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=17.2
Q ss_pred chhhhhhcccCCHHHHHHHhcc
Q 019378 92 SSHMLNRDTWANEAVSQTISTN 113 (342)
Q Consensus 92 ~~~~f~rdvl~~~~V~~~i~~~ 113 (342)
.-+.+-+.|+.||+|++||++|
T Consensus 20 ~~~~l~~~vl~dp~V~~Fl~~h 41 (94)
T PF07319_consen 20 RYEQLKQEVLSDPEVQAFLQEH 41 (94)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHS
T ss_pred HHHHHHHHHHcCHHHHHHHHHh
Confidence 3456678999999999999876
No 294
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=24.72 E-value=1.7e+02 Score=22.14 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=29.7
Q ss_pred EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEE
Q 019378 269 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRL 308 (342)
Q Consensus 269 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L 308 (342)
|-||||.+.+=.-....++.++.+-+-. ..++++..+-|
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk-~~~ldp~eh~L 42 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACK-RKQLDPMEHYL 42 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHH-hcCCChhHhee
Confidence 5699999999999999999999886433 24665555444
No 295
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=24.65 E-value=1.3e+02 Score=27.17 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=30.7
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
+-+.|+|+..|++++.|. ....++.|+++...-|+.+..
T Consensus 154 lF~~F~I~~VPafVv~C~---~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 154 LFSQYGIRSVPALVVFCS---QGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred HHHhcCCccccEEEEEcC---CCCCEEEecccHHHHHHHHHh
Confidence 346899999999999885 345789999998887766653
No 296
>smart00455 RBD Raf-like Ras-binding domain.
Probab=24.10 E-value=2.6e+02 Score=20.42 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=34.1
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEe
Q 019378 267 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTH 310 (342)
Q Consensus 267 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~ 310 (342)
+.+-||||++..=.-....+|.++..=+-.+ .++.+..+.+..
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~k-r~l~~~~~~v~~ 44 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKK-RGLNPECCVVRL 44 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHH-cCCCHHHEEEEE
Confidence 4567999999999999999999988876554 366666677664
No 297
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=24.02 E-value=2.3e+02 Score=24.58 Aligned_cols=47 Identities=19% Similarity=0.077 Sum_probs=34.5
Q ss_pred eEEEEECCCC----ceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec
Q 019378 265 CRVGVRLPDG----RRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA 311 (342)
Q Consensus 265 ~~i~iRlP~G----~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~ 311 (342)
+.|-|..++| .++......+.+|.+|++-+...++-.....+.|.+.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~ 51 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTN 51 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEe
Confidence 3678899999 5788888899999999999988754322333555553
No 298
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=23.57 E-value=1.9e+02 Score=23.21 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=22.7
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS 111 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~ 111 (342)
+.+..++++.+..|..|..|. +.+..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~------~~l~~~~~ 32 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLA------PELEKLLK 32 (154)
T ss_pred CCCEEEEEEECCCChhHHHhh------HHHHHHHH
Confidence 568899999999999999985 45555543
No 299
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.18 E-value=2.7e+02 Score=23.58 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=30.5
Q ss_pred EEEEEec-----CCCcchhhhhhcccCCHHHHHHHhcc-EEEEEeecCC-hh-HHHHHHhCCC----CCCcEEEE
Q 019378 81 LLVNLQS-----TKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDT-SE-GKKVCTYYKL----DSIPVVLV 143 (342)
Q Consensus 81 LlV~l~~-----~~~~~~~~f~rdvl~~~~V~~~i~~~-FV~w~~~~~s-~e-g~~~~~~y~v----~~~P~l~i 143 (342)
+.||..+ .++++|+.. +++|++. .-+-..|++. .+ ...+...++. .++|.|.|
T Consensus 2 VvlYttsl~giR~t~~~C~~a----------k~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNV----------RAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHH----------HHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4577776 268888764 5666653 3333445543 22 2234455444 68898885
No 300
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=23.08 E-value=8.2e+02 Score=25.22 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=57.4
Q ss_pred CcccccHHHHHHHH-HHcCCe-EEEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCChhHHHHHHh
Q 019378 61 LMFNGSFEKAKDAA-SVQDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCTY 132 (342)
Q Consensus 61 ~~f~gs~~eA~~~A-k~~~K~-LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s~eg~~~~~~ 132 (342)
.|+..+..+.++.- .+-.++ -|+.+.++.|..|..+ .+++++ ..-+-..+. .+-...+..
T Consensus 347 ~~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~----------~~~l~e~~~~s~~i~~~~~~~--~~~~~~~~~ 414 (555)
T TIGR03143 347 SLLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAEL----------QSFLGEFASLSEKLNSEAVNR--GEEPESETL 414 (555)
T ss_pred hccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHH----------HHHHHHHHhcCCcEEEEEecc--ccchhhHhh
Confidence 35555555555444 223344 4556666666556554 334432 322212222 223456778
Q ss_pred CCCCCCcEEEEEeCCCCceE-EEEeCCCChHHHHHHHHhhhhc
Q 019378 133 YKLDSIPVVLVVDPITGQKM-RSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l-~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
|++...|++.|++. .|+.. -++.|...-.+|-..|..++..
T Consensus 415 ~~v~~~P~~~i~~~-~~~~~~i~f~g~P~G~Ef~s~i~~i~~~ 456 (555)
T TIGR03143 415 PKITKLPTVALLDD-DGNYTGLKFHGVPSGHELNSFILALYNA 456 (555)
T ss_pred cCCCcCCEEEEEeC-CCcccceEEEecCccHhHHHHHHHHHHh
Confidence 99999999999963 34432 3677877777777767666664
No 301
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.97 E-value=1.8e+02 Score=25.08 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=26.6
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
..+..+++.++|++.| +|+. .+.|..+.+.|...|
T Consensus 166 ~~a~~~gv~G~Pt~vv----~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 166 ARARQLGISGVPFFVF----NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHCCCCcCCEEEE----CCeE--eecCCCCHHHHHHHh
Confidence 3456789999999987 3442 378999999887654
No 302
>PRK12426 elongation factor P; Provisional
Probab=22.74 E-value=1.2e+02 Score=26.93 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=26.7
Q ss_pred CCCCCCCCeeEEEEE-CCCCceEEEEeCCCCchHHH
Q 019378 256 EPKVDRSLLCRVGVR-LPDGRRMQRNFLRTDPIQLL 290 (342)
Q Consensus 256 EP~~~~~~~~~i~iR-lP~G~r~~rrF~~~~~l~~l 290 (342)
-|..+ ...+++.+| |-+|+.+.++|.+++++..+
T Consensus 29 kPGkg-~A~vr~klknl~tG~~~e~tf~s~ek~e~a 63 (185)
T PRK12426 29 TGPKG-ETFIKVSLQAADSDVVVERNFKAGQEVKEA 63 (185)
T ss_pred cCCCC-ceEEEEEEEEcCCCCeEEEEECCCCeEEEe
Confidence 35544 346777777 78999999999999999754
No 303
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=22.48 E-value=78 Score=27.48 Aligned_cols=35 Identities=6% Similarity=0.074 Sum_probs=15.4
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCCh
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP 161 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~ 161 (342)
.++++.++|.++|+++|.+-..++.--.+.|..+-
T Consensus 137 ~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~ 171 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFNENNEEYGILIEGYYSY 171 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE-----------------
T ss_pred HHHHHHcCCCCCCEEEEEecccccccccccccccc
Confidence 46789999999999999993322222235565443
No 304
>TIGR00407 proA gamma-glutamyl phosphate reductase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.
Probab=22.40 E-value=65 Score=31.99 Aligned_cols=58 Identities=5% Similarity=0.039 Sum_probs=44.4
Q ss_pred HHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEE
Q 019378 51 LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQ 118 (342)
Q Consensus 51 l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~ 118 (342)
-++.|+|-.+++--.++++|++.|-..+.-|-.++++.+...+..|. +-++.-.|.+.
T Consensus 302 ~eE~FgPvl~v~~~~~~~eAi~~aN~~~~GL~a~I~t~d~~~a~~~a----------~~i~~G~v~iN 359 (398)
T TIGR00407 302 DKEFLSLDLSVKIVESLEAAIQHINQYGTQHSDAILTENKANAEQFQ----------NGVDSAAVYHN 359 (398)
T ss_pred cchhhCceeEEEEECCHHHHHHHHHHhCCCCceEEEeCCHHHHHHHH----------HhCCeeEEEEe
Confidence 36789999999888999999999998888889999987755555553 33455555554
No 305
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=22.30 E-value=3.3e+02 Score=20.18 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 145 (342)
+-+++...-.....+++.|+.+.....-..|. .+.+.+++.+.|..+. +. .++..|.+. -|.++|+-
T Consensus 6 s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~-------~~A~~~r~~~~F~~~~--~~---~~~~~~~~~-~~~i~l~~ 72 (97)
T cd02981 6 SKEELEKFLDKDDVVVVGFFKDEESEEYKTFE-------KVAESLRDDYGFGHTS--DK---EVAKKLKVK-PGSVVLFK 72 (97)
T ss_pred CHHHHHHHhccCCeEEEEEECCCCcHHHHHHH-------HHHHhcccCCeEEEEC--hH---HHHHHcCCC-CCceEEeC
Confidence 33444444455556666666654333333332 3556666666664422 22 345556664 48888886
Q ss_pred CCCCceEEEEeCCCChHHHHHHH
Q 019378 146 PITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 146 p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
|-. +......|..+.+.|...|
T Consensus 73 ~~~-~~~~~y~g~~~~~~l~~fi 94 (97)
T cd02981 73 PFE-EEPVEYDGEFTEESLVEFI 94 (97)
T ss_pred Ccc-cCCccCCCCCCHHHHHHHH
Confidence 632 2223467776766665544
No 306
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=22.25 E-value=67 Score=32.59 Aligned_cols=46 Identities=7% Similarity=0.021 Sum_probs=38.0
Q ss_pred HHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhh
Q 019378 50 NLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHM 95 (342)
Q Consensus 50 ~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~ 95 (342)
.-++.|+|-.+++--.++++|++.|......|-.++++.+-.....
T Consensus 383 ~~eE~FgPvl~v~~~~~~~eai~~~n~~~~gLs~~vft~d~~~a~~ 428 (481)
T cd07141 383 AKEEIFGPVQQIFKFKTIDEVIERANNTTYGLAAAVFTKDIDKAIT 428 (481)
T ss_pred hhccccCCeEEEEeeCCHHHHHHHHhCCCccceEEEECCCHHHHHH
Confidence 3467899999999899999999999999999999999976433333
No 307
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=21.75 E-value=61 Score=32.15 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=36.9
Q ss_pred HHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhh
Q 019378 51 LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHM 95 (342)
Q Consensus 51 l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~ 95 (342)
-++.|+|-.+++--.++++|++.+......|-.+|++.+......
T Consensus 334 ~eE~fgPvl~v~~~~~~~eai~~~n~~~~gl~~~i~t~d~~~~~~ 378 (431)
T cd07104 334 REEIFGPVAPVIPFDDDEEAVELANDTEYGLSAAVFTRDLERAMA 378 (431)
T ss_pred hCcCcCCeEEEEEECCHHHHHHHHhCCCCCceEEEEcCCHHHHHH
Confidence 467899998888889999999999998888999999975333333
No 308
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=21.68 E-value=2.8e+02 Score=29.46 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=65.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
...|.+.+...++...-+.| .++-|..+.. ..+++.++..+ ..++.-+..+|+...++.+...-..-|++.
T Consensus 166 ~~~~~~~~~~l~~~~~~~~~--~~tiC~at~~------Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ 237 (647)
T PRK00087 166 QENFEKVLKELKKKGKEVKV--FNTICNATEV------RQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIH 237 (647)
T ss_pred HHHHHHHHHHHHHhCCCccc--CCCcchhhhh------HHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEE
Confidence 44555555555655444433 3544443332 23467777764 688888888888888876655444567777
Q ss_pred EEeCC--------CCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 143 VVDPI--------TGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 143 ii~p~--------tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
|=++. .-+.+....|..+|+.+++.+...|..
T Consensus 238 ie~~~el~~~~~~~~~~vgitagaStP~~~i~~v~~~l~~ 277 (647)
T PRK00087 238 IENAGELPEEWFKGVKIIGVTAGASTPDWIIEEVIKKMSE 277 (647)
T ss_pred ECChHHCCHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHH
Confidence 63331 113577788999999999988888874
No 309
>KOG2699 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=22 Score=35.27 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=32.8
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL 298 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~ 298 (342)
...++++++|||...++.|.....+..+|.|+...+
T Consensus 316 ~~~~~~ak~pd~~l~q~~f~~~~~~~~~~g~~~~a~ 351 (407)
T KOG2699|consen 316 TPFKNVAKDPDGELLQGIFLPNELLLARYGFVSEAL 351 (407)
T ss_pred cccchhccCcchhhhhhhhchhHHHHHHHhccccch
Confidence 467899999999999999999999999999998764
No 310
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q; InterPro: IPR018927 The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TCP fibres are homopolymers of TcpA pilin, encoded by the first gene in the tcp biogenesis operon. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ. TcpQ is required for proper localisation of TcpC to the outer membrane [, ]. This entry represents a C-terminal domain found in TcpQ and other pilus biosynthesis proteins.; PDB: 3OV5_A 2L4W_A.
Probab=21.48 E-value=74 Score=24.04 Aligned_cols=35 Identities=26% Similarity=0.139 Sum_probs=22.5
Q ss_pred hhCCCCcCcccccHHHHHHHHHH----cCCeEEEEEecC
Q 019378 54 LYRPPFHLMFNGSFEKAKDAASV----QDKWLLVNLQST 88 (342)
Q Consensus 54 ~f~pp~~~~f~gs~~eA~~~Ak~----~~K~LlV~l~~~ 88 (342)
-|.-..+.-|.|+|.+|+..--+ .+++|-+.++-.
T Consensus 34 dy~i~~~~~~~gsf~~Av~~l~~~~~~~~~~l~~~~y~~ 72 (84)
T PF10671_consen 34 DYPIDAPATFSGSFEDAVKQLFSAYNSAGYPLQVCFYQG 72 (84)
T ss_dssp --B--CCCCC-E-HHHHHHHHHHHHGGGTEEEEEETTE-
T ss_pred CEEecCceEecCcHHHHHHHHHHHHHhCCCCeEEEEeec
Confidence 45555667799999999988744 589999988854
No 311
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=21.30 E-value=71 Score=32.06 Aligned_cols=44 Identities=7% Similarity=-0.073 Sum_probs=36.9
Q ss_pred HHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchh
Q 019378 51 LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSH 94 (342)
Q Consensus 51 l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~ 94 (342)
-++.|+|-.+++--.++++|++.+......|-.++++.+.....
T Consensus 360 ~eE~FgPvl~v~~~~~~~eai~~~n~~~~gLs~~vft~d~~~a~ 403 (457)
T cd07108 360 REEIFGPVLCAIPWKDEDEVIAMANDSHYGLAAYVWTRDLGRAL 403 (457)
T ss_pred hcCCCCceEEeecCCCHHHHHHHHhCCCcCceeEEEcCCHHHHH
Confidence 36789999999888999999999999999999999997543333
No 312
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=20.74 E-value=68 Score=31.97 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=36.4
Q ss_pred HHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCc
Q 019378 50 NLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEF 91 (342)
Q Consensus 50 ~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~ 91 (342)
.-++.|+|-.+++--.+.++|++.+......|-.|+++.+..
T Consensus 334 ~~eE~fgPvl~v~~~~~~deai~~~n~~~~gL~~~v~t~d~~ 375 (432)
T cd07105 334 YSEESFGPVVSIIRVKDEEEAVRIANDSEYGLSAAVFTRDLA 375 (432)
T ss_pred HhCCCcCCeEEEEeeCCHHHHHHHHhCCCCCceEEEEcCCHH
Confidence 456889999999888999999999999988999999997543
No 313
>PRK15265 subtilase cytotoxin subunit B-like protein; Provisional
Probab=20.74 E-value=68 Score=26.75 Aligned_cols=42 Identities=21% Similarity=0.439 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHH---HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEE
Q 019378 63 FNGSFEKAKDAAS---VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFI 115 (342)
Q Consensus 63 f~gs~~eA~~~Ak---~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV 115 (342)
+.-+|++-+++|+ ..|+++=||+.. |||.||.+...+..|-+
T Consensus 72 w~~sF~~~~~qA~yyYtTg~~vRiy~~~-----------nVWTdp~F~~~fS~neL 116 (134)
T PRK15265 72 WGASYNTLYDQAMYYYTTGKRIRVYYAP-----------DVWTNNSFVRALTANAL 116 (134)
T ss_pred hhhhHHHHHHHhhheeecCCcEEEEEcC-----------CcccCcHHHhhhcccce
Confidence 4556777777773 456666666654 89999999998877643
No 314
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=20.23 E-value=2e+02 Score=24.03 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=25.9
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
..+..+++.++|+++| +|+.+..-.| .+..+|...|...++
T Consensus 134 ~~~~~~gi~gTPt~iI----nG~~~~~~~~-~~~~~~~~~~~~~~~ 174 (178)
T cd03019 134 KLAKKYKITGVPAFVV----NGKYVVNPSA-IGGDDTLQVLDELIE 174 (178)
T ss_pred HHHHHcCCCCCCeEEE----CCEEEEChhh-ccchhHHHHHHHHHH
Confidence 3467889999999987 5665433333 344446666665554
No 315
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=20.03 E-value=47 Score=21.83 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=21.5
Q ss_pred HHhCCCCCCcEEEEEeCCCCceEEEEeC
Q 019378 130 CTYYKLDSIPVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G 157 (342)
.+.+.+..-++|++-++..+..|.+|.|
T Consensus 17 ~e~F~i~~~~fl~~a~~~~~s~Iy~Wd~ 44 (44)
T PF03736_consen 17 VEPFSIGGDQFLAVASFFGDSQIYRWDG 44 (44)
T ss_pred EEEEEECCEEEEEEEeCCCCCEEEEeCC
Confidence 3455667788999988877778888876
No 316
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=20.02 E-value=3.8e+02 Score=24.55 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHH--HHHhCCCCCCcE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKK--VCTYYKLDSIPV 140 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~--~~~~y~v~~~P~ 140 (342)
.|..-+|+..|.+.+-+.|+.|.+.+.........+.+..+.+.++.+. .+-.+.++-.+.+... +........-|.
T Consensus 141 ~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~ 220 (255)
T cd02012 141 EGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPT 220 (255)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCE
Confidence 3444568888888776644555554433222222355566777777765 2444444422333321 112122224688
Q ss_pred EEEEeCCCCc
Q 019378 141 VLVVDPITGQ 150 (342)
Q Consensus 141 l~ii~p~tG~ 150 (342)
++++.-..|.
T Consensus 221 ~I~~~t~kg~ 230 (255)
T cd02012 221 LIIAKTIKGK 230 (255)
T ss_pred EEEEEeeccc
Confidence 8777755554
Done!