Query 019378
Match_columns 342
No_of_seqs 252 out of 1161
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ec4_A FAS-associated factor 1 100.0 8.5E-31 2.9E-35 229.6 13.8 134 43-176 16-171 (178)
2 2dlx_A UBX domain-containing p 100.0 2.5E-29 8.5E-34 215.2 12.4 133 43-176 7-139 (153)
3 2cr5_A Reproduction 8; UBX dom 99.9 5.4E-22 1.9E-26 160.1 12.3 86 250-339 9-94 (109)
4 2dzk_A UBX domain-containing p 99.8 4.9E-19 1.7E-23 142.6 11.6 84 257-342 6-90 (109)
5 3qx1_A FAS-associated factor 1 99.8 8E-19 2.7E-23 134.9 10.4 77 261-340 4-81 (84)
6 1s3s_G P47 protein; AAA ATPase 99.8 4.4E-19 1.5E-23 146.7 8.9 78 262-342 50-127 (127)
7 1wj4_A KIAA0794 protein; UBX d 99.7 5.7E-18 2E-22 139.3 10.3 81 257-341 36-118 (124)
8 3f9u_A Putative exported cytoc 99.5 6.2E-14 2.1E-18 120.3 10.3 114 61-175 30-168 (172)
9 2kuc_A Putative disulphide-iso 99.5 5.9E-13 2E-17 108.4 13.5 112 62-174 11-122 (130)
10 3ph9_A Anterior gradient prote 99.5 1.2E-13 4.3E-18 117.3 8.6 117 53-175 21-147 (151)
11 2ju5_A Thioredoxin disulfide i 99.4 1.3E-12 4.6E-17 110.5 14.3 107 65-173 34-152 (154)
12 2lst_A Thioredoxin; structural 99.1 2E-14 6.9E-19 117.3 0.0 113 63-176 5-119 (130)
13 3ira_A Conserved protein; meth 99.4 8.9E-13 3E-17 114.5 9.9 113 60-175 21-146 (173)
14 3fk8_A Disulphide isomerase; A 99.3 1.2E-11 4.2E-16 101.1 11.0 105 65-171 16-131 (133)
15 2fwh_A Thiol:disulfide interch 99.3 3.5E-11 1.2E-15 99.0 11.2 106 64-173 19-128 (134)
16 2l57_A Uncharacterized protein 99.0 1.8E-09 6.2E-14 87.2 10.9 98 74-175 22-119 (126)
17 1ep7_A Thioredoxin CH1, H-type 99.0 4E-09 1.4E-13 82.9 11.9 101 64-172 10-110 (112)
18 2voc_A Thioredoxin; electron t 99.0 7.9E-09 2.7E-13 81.8 12.2 100 63-174 7-106 (112)
19 1xfl_A Thioredoxin H1; AT3G510 98.9 8E-09 2.8E-13 83.7 12.1 99 63-172 23-123 (124)
20 3qfa_C Thioredoxin; protein-pr 98.9 6.4E-09 2.2E-13 83.1 11.2 99 60-171 15-115 (116)
21 3tco_A Thioredoxin (TRXA-1); d 98.9 6.2E-09 2.1E-13 81.0 10.6 99 63-172 10-108 (109)
22 3dml_A Putative uncharacterize 98.9 8.6E-10 2.9E-14 89.4 5.7 96 77-175 17-112 (116)
23 3zzx_A Thioredoxin; oxidoreduc 98.9 1.1E-08 3.9E-13 80.9 11.6 92 65-169 9-102 (105)
24 3die_A Thioredoxin, TRX; elect 98.9 1.3E-08 4.5E-13 78.8 11.5 98 62-171 8-105 (106)
25 2vlu_A Thioredoxin, thioredoxi 98.9 1.8E-08 6.1E-13 80.6 12.3 105 60-173 16-120 (122)
26 3gnj_A Thioredoxin domain prot 98.9 2.1E-08 7.1E-13 78.5 12.3 91 76-173 20-110 (111)
27 1nsw_A Thioredoxin, TRX; therm 98.9 7.4E-09 2.5E-13 80.4 9.5 93 73-172 12-104 (105)
28 2vm1_A Thioredoxin, thioredoxi 98.9 1.6E-08 5.5E-13 80.0 11.6 101 63-174 13-115 (118)
29 3d22_A TRXH4, thioredoxin H-ty 98.9 1.6E-08 5.3E-13 83.0 11.4 101 63-174 31-133 (139)
30 2yzu_A Thioredoxin; redox prot 98.9 2.2E-08 7.5E-13 77.7 11.7 99 64-173 8-106 (109)
31 1thx_A Thioredoxin, thioredoxi 98.9 2E-08 6.7E-13 79.0 11.3 100 64-173 14-113 (115)
32 2i4a_A Thioredoxin; acidophIle 98.9 2.3E-08 7.8E-13 77.6 11.6 98 64-171 9-106 (107)
33 2dml_A Protein disulfide-isome 98.9 1.6E-08 5.5E-13 81.7 10.9 114 53-175 11-126 (130)
34 1ti3_A Thioredoxin H, PTTRXH1; 98.9 1.6E-08 5.5E-13 79.4 10.5 99 63-172 11-111 (113)
35 2trx_A Thioredoxin; electron t 98.9 2.1E-08 7.3E-13 78.1 11.0 99 64-172 9-107 (108)
36 1w4v_A Thioredoxin, mitochondr 98.9 2.2E-08 7.4E-13 80.2 11.3 92 74-172 27-118 (119)
37 3hxs_A Thioredoxin, TRXP; elec 98.8 2E-08 6.8E-13 82.5 11.2 90 77-173 50-139 (141)
38 3p2a_A Thioredoxin 2, putative 98.8 3.4E-08 1.2E-12 82.0 12.7 103 62-175 43-145 (148)
39 2l5l_A Thioredoxin; structural 98.8 1.4E-08 4.8E-13 83.3 10.0 94 76-176 36-129 (136)
40 1dby_A Chloroplast thioredoxin 98.8 2.8E-08 9.6E-13 77.3 11.2 92 74-172 15-106 (107)
41 2e0q_A Thioredoxin; electron t 98.8 5.3E-08 1.8E-12 74.7 12.2 98 64-173 6-103 (104)
42 4euy_A Uncharacterized protein 98.8 1.8E-08 6E-13 78.7 9.5 87 76-172 16-104 (105)
43 1sen_A Thioredoxin-like protei 98.8 5E-09 1.7E-13 89.4 6.7 119 49-175 20-150 (164)
44 3ul3_B Thioredoxin, thioredoxi 98.8 1.7E-08 5.9E-13 81.9 9.6 117 45-170 11-127 (128)
45 3m9j_A Thioredoxin; oxidoreduc 98.8 3.8E-08 1.3E-12 76.1 11.0 96 65-171 9-104 (105)
46 1xwb_A Thioredoxin; dimerizati 98.8 7.8E-08 2.7E-12 74.3 12.7 97 65-171 9-105 (106)
47 3f3q_A Thioredoxin-1; His TAG, 98.8 4.5E-08 1.5E-12 77.2 11.2 89 71-170 17-107 (109)
48 2o8v_B Thioredoxin 1; disulfid 98.8 2.4E-08 8.2E-13 81.4 9.5 100 63-172 28-127 (128)
49 1t00_A Thioredoxin, TRX; redox 98.8 3.6E-08 1.2E-12 77.4 10.1 92 75-173 20-111 (112)
50 1fb6_A Thioredoxin M; electron 98.8 4.3E-08 1.5E-12 75.7 10.2 97 65-171 8-104 (105)
51 1syr_A Thioredoxin; SGPP, stru 98.8 9.8E-08 3.4E-12 75.3 12.3 96 64-172 16-111 (112)
52 2ppt_A Thioredoxin-2; thiredox 98.8 6.2E-08 2.1E-12 81.8 11.7 91 76-173 62-152 (155)
53 3hz4_A Thioredoxin; NYSGXRC, P 98.8 4.2E-08 1.4E-12 81.0 10.4 97 71-174 17-113 (140)
54 2i1u_A Thioredoxin, TRX, MPT46 98.8 2.6E-08 8.9E-13 79.2 8.9 92 74-172 26-117 (121)
55 1x5d_A Protein disulfide-isome 98.8 5.7E-08 1.9E-12 78.6 11.0 101 64-174 14-118 (133)
56 1r26_A Thioredoxin; redox-acti 98.8 5.9E-08 2E-12 78.8 11.0 96 65-173 28-123 (125)
57 2f51_A Thioredoxin; electron t 98.8 6.1E-08 2.1E-12 77.6 10.9 103 63-172 8-112 (118)
58 3d6i_A Monothiol glutaredoxin- 98.8 6E-08 2E-12 76.2 10.6 100 65-173 9-109 (112)
59 2oe3_A Thioredoxin-3; electron 98.7 1.5E-07 5.2E-12 74.9 12.0 93 68-169 20-112 (114)
60 2j23_A Thioredoxin; immune pro 98.7 7.4E-08 2.5E-12 77.3 10.2 91 74-172 29-120 (121)
61 3uvt_A Thioredoxin domain-cont 98.7 2.1E-07 7.3E-12 72.5 12.5 94 62-170 10-109 (111)
62 2dj1_A Protein disulfide-isome 98.7 1E-07 3.4E-12 78.0 11.0 100 63-174 23-125 (140)
63 1gh2_A Thioredoxin-like protei 98.7 1.5E-07 5.1E-12 73.4 11.5 98 64-172 9-106 (107)
64 2b5x_A YKUV protein, TRXY; thi 98.7 1.3E-07 4.5E-12 77.2 11.5 100 71-174 22-146 (148)
65 1zma_A Bacterocin transport ac 98.7 1.2E-07 4.1E-12 75.5 10.7 88 73-168 24-116 (118)
66 2xc2_A Thioredoxinn; oxidoredu 98.7 2E-07 6.8E-12 74.0 11.8 94 65-171 22-116 (117)
67 3aps_A DNAJ homolog subfamily 98.7 9.3E-08 3.2E-12 76.3 9.6 97 72-175 15-115 (122)
68 2vim_A Thioredoxin, TRX; thior 98.7 3.1E-07 1.1E-11 70.6 12.2 94 65-171 8-103 (104)
69 2f9s_A Thiol-disulfide oxidore 98.7 1.6E-07 5.6E-12 77.6 11.2 96 76-175 24-140 (151)
70 3raz_A Thioredoxin-related pro 98.7 1.1E-07 3.9E-12 78.8 10.3 95 75-176 21-143 (151)
71 3apq_A DNAJ homolog subfamily 98.6 2.3E-07 7.9E-12 81.8 12.0 100 65-175 105-204 (210)
72 2lja_A Putative thiol-disulfid 98.6 1.7E-07 5.9E-12 77.3 10.5 96 77-176 29-146 (152)
73 3gix_A Thioredoxin-like protei 98.6 1.4E-07 4.8E-12 79.1 10.0 99 66-173 13-121 (149)
74 3dxb_A Thioredoxin N-terminall 98.6 1.2E-07 4E-12 84.7 10.0 102 64-175 19-120 (222)
75 3erw_A Sporulation thiol-disul 98.6 1.1E-07 3.6E-12 77.5 9.0 88 77-168 33-144 (145)
76 4evm_A Thioredoxin family prot 98.6 1.9E-07 6.5E-12 74.8 10.4 91 76-170 20-136 (138)
77 3qou_A Protein YBBN; thioredox 98.6 1.8E-07 6.1E-12 86.1 11.5 102 62-172 12-113 (287)
78 1zzo_A RV1677; thioredoxin fol 98.6 1.6E-07 5.5E-12 75.4 9.7 90 76-173 23-135 (136)
79 2wz9_A Glutaredoxin-3; protein 98.6 3.4E-07 1.2E-11 76.6 12.1 98 64-174 20-119 (153)
80 1v98_A Thioredoxin; oxidoreduc 98.6 3.3E-07 1.1E-11 75.3 11.3 99 64-173 40-138 (140)
81 1oaz_A Thioredoxin 1; immune s 98.6 5.1E-08 1.7E-12 78.9 6.3 99 64-172 10-122 (123)
82 2l6c_A Thioredoxin; oxidoreduc 98.6 2.9E-07 1E-11 72.5 10.4 95 64-173 10-106 (110)
83 1lu4_A Soluble secreted antige 98.6 2E-07 6.8E-12 75.1 9.6 89 76-172 22-135 (136)
84 1faa_A Thioredoxin F; electron 98.6 5.6E-07 1.9E-11 72.0 11.7 97 63-171 24-122 (124)
85 2av4_A Thioredoxin-like protei 98.6 1.9E-07 6.6E-12 79.3 9.3 100 65-173 30-139 (160)
86 3emx_A Thioredoxin; structural 98.6 2.6E-07 8.8E-12 75.7 9.7 88 80-175 33-128 (135)
87 2pu9_C TRX-F, thioredoxin F-ty 98.6 3.3E-07 1.1E-11 71.9 9.5 99 64-172 12-110 (111)
88 1wmj_A Thioredoxin H-type; str 98.5 2.2E-08 7.5E-13 80.7 2.4 101 63-174 21-123 (130)
89 1qgv_A Spliceosomal protein U5 98.5 4E-07 1.4E-11 75.6 10.2 91 77-174 22-122 (142)
90 3or5_A Thiol:disulfide interch 98.5 8.6E-07 2.9E-11 74.0 12.3 96 76-175 32-153 (165)
91 1mek_A Protein disulfide isome 98.5 1.5E-07 5E-12 74.2 6.9 101 62-173 12-117 (120)
92 3kh7_A Thiol:disulfide interch 98.5 3.3E-07 1.1E-11 78.5 9.4 95 73-174 53-168 (176)
93 1kng_A Thiol:disulfide interch 98.5 1.4E-07 4.8E-12 78.1 6.7 94 73-173 37-152 (156)
94 2qsi_A Putative hydrogenase ex 98.5 1.3E-06 4.6E-11 72.5 12.4 115 48-174 8-124 (137)
95 2b1k_A Thiol:disulfide interch 98.5 2.8E-07 9.4E-12 77.7 8.3 92 76-174 49-161 (168)
96 3kcm_A Thioredoxin family prot 98.5 1E-06 3.5E-11 72.7 11.7 96 76-175 26-145 (154)
97 3gl3_A Putative thiol:disulfid 98.5 1.6E-06 5.5E-11 71.4 12.7 98 74-175 24-144 (152)
98 3fkf_A Thiol-disulfide oxidore 98.5 5.8E-07 2E-11 73.4 9.7 90 77-173 32-146 (148)
99 3cxg_A Putative thioredoxin; m 98.5 5.4E-07 1.8E-11 73.8 9.1 98 65-173 29-129 (133)
100 2dbc_A PDCL2, unnamed protein 98.5 2.7E-07 9.4E-12 75.8 7.3 93 63-169 16-117 (135)
101 2yj7_A LPBCA thioredoxin; oxid 97.9 1.8E-08 6.1E-13 77.7 0.0 92 73-171 14-105 (106)
102 3hcz_A Possible thiol-disulfid 98.5 2.4E-07 8.1E-12 75.8 6.7 93 77-173 30-146 (148)
103 3lor_A Thiol-disulfide isomera 98.5 3.5E-06 1.2E-10 69.9 13.9 99 69-174 21-156 (160)
104 2djj_A PDI, protein disulfide- 98.5 3.5E-07 1.2E-11 72.7 7.2 97 65-173 15-117 (121)
105 2qgv_A Hydrogenase-1 operon pr 98.5 8.2E-07 2.8E-11 74.0 9.6 110 48-174 11-126 (140)
106 3h79_A Thioredoxin-like protei 98.4 1.3E-06 4.6E-11 70.3 10.8 100 62-170 20-125 (127)
107 3ia1_A THIO-disulfide isomeras 98.4 1.1E-06 3.7E-11 72.7 10.4 89 79-174 31-145 (154)
108 2lrn_A Thiol:disulfide interch 98.4 1.9E-06 6.6E-11 71.3 12.0 92 77-175 28-143 (152)
109 2kzr_A Ubiquitin thioesterase 98.4 2.4E-07 8.3E-12 70.7 5.8 72 266-340 2-75 (86)
110 2l5o_A Putative thioredoxin; s 98.4 8.4E-07 2.9E-11 73.2 9.7 97 75-175 25-143 (153)
111 3lwa_A Secreted thiol-disulfid 98.4 1.6E-06 5.5E-11 74.2 11.7 94 76-173 57-181 (183)
112 3eyt_A Uncharacterized protein 98.4 1.1E-06 3.8E-11 72.9 10.4 94 74-174 24-153 (158)
113 2dj0_A Thioredoxin-related tra 98.4 5.5E-07 1.9E-11 73.7 8.1 93 63-164 13-112 (137)
114 2h30_A Thioredoxin, peptide me 98.4 1E-06 3.6E-11 73.5 8.9 98 73-173 33-156 (164)
115 3q6o_A Sulfhydryl oxidase 1; p 98.4 2.1E-06 7.1E-11 77.3 11.3 116 53-176 6-130 (244)
116 1jfu_A Thiol:disulfide interch 98.4 4E-06 1.4E-10 71.8 12.5 95 76-174 58-181 (186)
117 1a8l_A Protein disulfide oxido 98.4 3.9E-06 1.3E-10 74.2 12.7 93 73-172 128-225 (226)
118 3ed3_A Protein disulfide-isome 98.4 1.7E-06 6E-11 80.8 10.7 102 64-173 24-142 (298)
119 2ggt_A SCO1 protein homolog, m 98.4 3.8E-06 1.3E-10 70.0 11.6 95 77-175 22-163 (164)
120 1x5e_A Thioredoxin domain cont 98.4 2.7E-06 9.2E-11 68.2 10.2 98 63-174 13-111 (126)
121 3ewl_A Uncharacterized conserv 98.3 2.7E-06 9.1E-11 69.3 10.3 91 77-171 26-139 (142)
122 3hdc_A Thioredoxin family prot 98.3 2.2E-06 7.5E-11 71.5 9.8 91 77-171 40-150 (158)
123 2lrt_A Uncharacterized protein 98.3 3E-06 1E-10 70.6 10.5 91 77-171 34-146 (152)
124 3idv_A Protein disulfide-isome 98.3 4E-06 1.4E-10 74.5 11.1 100 63-174 21-123 (241)
125 2dj3_A Protein disulfide-isome 98.3 1.7E-06 5.6E-11 70.0 7.6 93 77-175 24-120 (133)
126 3ha9_A Uncharacterized thiored 98.3 5.9E-06 2E-10 69.2 11.2 88 76-172 35-163 (165)
127 3t58_A Sulfhydryl oxidase 1; o 98.3 6.3E-06 2.2E-10 82.9 13.0 118 53-176 6-130 (519)
128 3eur_A Uncharacterized protein 98.2 3.1E-06 1.1E-10 69.2 8.3 80 77-157 30-132 (142)
129 2rli_A SCO2 protein homolog, m 98.2 1.8E-05 6.3E-10 66.3 12.9 95 77-175 25-166 (171)
130 1nho_A Probable thioredoxin; b 98.2 3.5E-06 1.2E-10 62.3 7.5 81 81-172 4-84 (85)
131 3fw2_A Thiol-disulfide oxidore 98.2 8.6E-06 2.9E-10 67.1 10.6 90 77-173 32-148 (150)
132 1i5g_A Tryparedoxin II; electr 98.2 9.9E-06 3.4E-10 66.2 10.4 78 75-155 25-126 (144)
133 2es7_A Q8ZP25_salty, putative 98.2 4.5E-06 1.5E-10 69.5 8.2 99 62-174 22-126 (142)
134 3s9f_A Tryparedoxin; thioredox 98.2 7.1E-06 2.4E-10 69.4 9.6 80 73-155 43-146 (165)
135 1wou_A Thioredoxin -related pr 98.2 1.7E-06 5.8E-11 69.6 5.3 91 65-166 13-118 (123)
136 1o8x_A Tryparedoxin, TRYX, TXN 98.2 1E-05 3.5E-10 66.3 10.2 79 74-155 24-126 (146)
137 1fo5_A Thioredoxin; disulfide 98.2 5E-06 1.7E-10 61.4 7.2 82 79-171 3-84 (85)
138 3evi_A Phosducin-like protein 98.2 4.3E-06 1.5E-10 67.5 7.3 90 55-159 2-93 (118)
139 2trc_P Phosducin, MEKA, PP33; 98.1 2.3E-06 7.8E-11 76.5 6.1 86 63-160 106-193 (217)
140 1o73_A Tryparedoxin; electron 98.1 1.2E-05 4E-10 65.6 9.8 79 74-155 24-126 (144)
141 2hyx_A Protein DIPZ; thioredox 98.1 1.2E-05 4.1E-10 77.1 10.8 97 74-174 78-200 (352)
142 3iv4_A Putative oxidoreductase 98.1 1.9E-05 6.4E-10 63.2 10.2 87 72-166 18-109 (112)
143 2r2j_A Thioredoxin domain-cont 98.1 1.7E-05 5.8E-10 76.3 11.8 101 63-174 11-118 (382)
144 2b5e_A Protein disulfide-isome 98.1 1.9E-05 6.6E-10 78.5 11.8 101 62-173 19-122 (504)
145 1a0r_P Phosducin, MEKA, PP33; 98.1 4E-06 1.4E-10 76.4 5.9 99 65-175 121-224 (245)
146 3idv_A Protein disulfide-isome 98.0 3E-05 1E-09 68.8 11.3 99 63-173 136-237 (241)
147 3drn_A Peroxiredoxin, bacterio 98.0 2.6E-05 9E-10 65.3 10.3 93 77-173 27-145 (161)
148 3kp8_A Vkorc1/thioredoxin doma 98.0 4.2E-06 1.4E-10 66.1 5.0 86 69-168 3-90 (106)
149 2ywi_A Hypothetical conserved 98.0 1.5E-05 5E-10 68.7 8.3 96 76-175 43-176 (196)
150 3f8u_A Protein disulfide-isome 98.0 1.1E-05 3.6E-10 79.8 8.2 102 64-173 8-109 (481)
151 1ilo_A Conserved hypothetical 98.0 2.2E-05 7.5E-10 57.0 7.9 74 81-168 2-76 (77)
152 3cmi_A Peroxiredoxin HYR1; thi 98.0 2.4E-05 8.1E-10 66.2 9.1 92 77-173 31-168 (171)
153 2p5q_A Glutathione peroxidase 98.0 4.9E-05 1.7E-09 63.5 10.8 93 77-173 31-168 (170)
154 2cvb_A Probable thiol-disulfid 98.0 2.2E-05 7.4E-10 67.3 8.8 92 77-175 32-161 (188)
155 4fo5_A Thioredoxin-like protei 98.0 1.1E-05 3.8E-10 65.9 6.4 82 77-168 31-140 (143)
156 3uem_A Protein disulfide-isome 97.9 2.9E-05 9.9E-10 73.6 9.7 99 62-170 254-354 (361)
157 3f8u_A Protein disulfide-isome 97.9 2E-05 6.8E-10 77.8 8.8 102 62-173 357-461 (481)
158 2vup_A Glutathione peroxidase- 97.9 4.3E-05 1.5E-09 65.9 9.8 94 77-174 47-186 (190)
159 1sji_A Calsequestrin 2, calseq 97.9 6.2E-05 2.1E-09 71.4 11.2 97 65-173 19-122 (350)
160 3us3_A Calsequestrin-1; calciu 97.9 6.6E-05 2.3E-09 71.9 11.1 102 62-173 18-124 (367)
161 2v1m_A Glutathione peroxidase; 97.9 0.0001 3.6E-09 61.4 10.9 93 77-173 30-167 (169)
162 1xvw_A Hypothetical protein RV 97.9 4.9E-05 1.7E-09 63.1 8.6 78 77-161 34-144 (160)
163 2bmx_A Alkyl hydroperoxidase C 97.9 6.8E-05 2.3E-09 64.9 9.8 93 77-173 44-170 (195)
164 1zof_A Alkyl hydroperoxide-red 97.8 5E-05 1.7E-09 65.9 8.6 93 77-172 32-160 (198)
165 2ywm_A Glutaredoxin-like prote 97.8 0.00011 3.7E-09 65.0 10.6 85 77-174 135-221 (229)
166 2k6v_A Putative cytochrome C o 97.8 8.1E-05 2.8E-09 62.3 9.2 87 77-171 34-171 (172)
167 3dwv_A Glutathione peroxidase- 97.8 6.1E-05 2.1E-09 64.8 8.6 91 77-174 45-184 (187)
168 1we0_A Alkyl hydroperoxide red 97.8 7.6E-05 2.6E-09 64.0 9.1 93 77-173 30-157 (187)
169 2obi_A PHGPX, GPX-4, phospholi 97.7 0.00014 4.8E-09 62.1 9.9 90 77-170 46-181 (183)
170 1a8l_A Protein disulfide oxido 97.7 0.00026 9E-09 62.2 11.9 92 76-173 20-113 (226)
171 1qmv_A Human thioredoxin perox 97.7 0.00016 5.5E-09 62.6 9.6 92 77-172 33-162 (197)
172 3kij_A Probable glutathione pe 97.7 0.00024 8.2E-09 60.5 10.5 94 77-174 37-171 (180)
173 1uul_A Tryparedoxin peroxidase 97.7 0.00014 4.7E-09 63.4 9.1 93 77-172 35-164 (202)
174 3apo_A DNAJ homolog subfamily 97.7 4.3E-05 1.5E-09 80.1 6.8 98 65-173 124-221 (780)
175 2b7k_A SCO1 protein; metalloch 97.7 0.00029 1E-08 61.3 10.9 96 76-175 39-181 (200)
176 2p31_A CL683, glutathione pero 97.7 8.6E-05 2.9E-09 63.5 7.2 93 76-172 47-180 (181)
177 2h01_A 2-Cys peroxiredoxin; th 97.7 0.00017 5.7E-09 62.2 9.1 93 77-172 30-158 (192)
178 2djk_A PDI, protein disulfide- 97.6 0.0002 6.8E-09 58.2 8.8 88 76-173 21-115 (133)
179 1zye_A Thioredoxin-dependent p 97.6 0.00022 7.6E-09 63.2 9.8 94 77-173 55-185 (220)
180 2f8a_A Glutathione peroxidase 97.6 0.0003 1E-08 61.9 10.5 94 76-173 45-207 (208)
181 2i81_A 2-Cys peroxiredoxin; st 97.6 0.00035 1.2E-08 61.7 10.8 93 77-172 51-179 (213)
182 1z6n_A Hypothetical protein PA 97.6 0.00021 7.3E-09 61.0 8.2 94 50-157 31-129 (167)
183 2gs3_A PHGPX, GPX-4, phospholi 97.5 0.00038 1.3E-08 59.6 9.8 88 77-171 48-184 (185)
184 3ga4_A Dolichyl-diphosphooligo 97.5 0.00089 3.1E-08 57.8 12.0 119 49-174 9-154 (178)
185 1xzo_A BSSCO, hypothetical pro 97.5 0.00047 1.6E-08 57.7 10.1 93 77-173 32-172 (174)
186 3apo_A DNAJ homolog subfamily 97.5 0.00026 9E-09 74.1 10.3 119 48-175 647-769 (780)
187 3u5r_E Uncharacterized protein 97.5 0.0003 1E-08 62.2 9.1 92 77-175 57-189 (218)
188 2ls5_A Uncharacterized protein 96.7 1.3E-05 4.3E-10 66.7 0.0 97 70-169 25-144 (159)
189 2hls_A Protein disulfide oxido 97.5 0.00073 2.5E-08 60.9 11.4 88 77-175 137-228 (243)
190 3qcp_A QSOX from trypanosoma b 97.5 0.00021 7.2E-09 70.8 7.8 104 63-173 29-152 (470)
191 2b5e_A Protein disulfide-isome 97.5 0.00014 4.8E-09 72.3 6.6 98 64-173 365-467 (504)
192 3ztl_A Thioredoxin peroxidase; 97.4 0.00032 1.1E-08 62.2 7.8 87 76-169 67-194 (222)
193 3gkn_A Bacterioferritin comigr 97.4 0.00084 2.9E-08 55.7 9.6 79 77-158 34-144 (163)
194 2lus_A Thioredoxion; CR-Trp16, 96.5 2.4E-05 8.3E-10 63.4 0.0 75 76-154 23-124 (143)
195 2i3y_A Epididymal secretory gl 97.3 0.002 7E-08 57.0 12.1 95 76-174 54-212 (215)
196 2r37_A Glutathione peroxidase 97.3 0.0023 7.7E-08 56.3 11.9 35 139-174 160-194 (207)
197 2jsy_A Probable thiol peroxida 97.3 0.0015 5E-08 54.5 10.1 89 77-172 43-166 (167)
198 2c0g_A ERP29 homolog, windbeut 97.3 0.0015 5.1E-08 59.4 10.7 98 62-173 21-132 (248)
199 2qc7_A ERP31, ERP28, endoplasm 97.3 0.0016 5.6E-08 58.8 10.9 97 63-172 11-118 (240)
200 1ttn_A DC-UBP, dendritic cell- 97.2 0.0013 4.6E-08 51.6 8.5 80 255-341 14-94 (106)
201 3me7_A Putative uncharacterize 97.2 0.002 6.8E-08 54.4 10.0 95 77-175 27-164 (170)
202 2ywm_A Glutaredoxin-like prote 97.2 0.0032 1.1E-07 55.3 11.6 102 65-173 5-115 (229)
203 2pjh_A Protein NPL4, nuclear p 97.1 0.0004 1.4E-08 52.0 4.4 72 265-339 5-77 (80)
204 1xvq_A Thiol peroxidase; thior 97.1 0.0013 4.3E-08 55.8 8.0 74 77-157 43-147 (175)
205 3a2v_A Probable peroxiredoxin; 97.1 0.0014 4.9E-08 59.5 8.7 93 77-172 32-161 (249)
206 1wjk_A C330018D20RIK protein; 97.1 0.0024 8.3E-08 49.3 8.3 83 77-173 14-96 (100)
207 1wju_A NEDD8 ultimate buster-1 97.0 0.0036 1.2E-07 48.8 9.0 72 261-339 12-88 (100)
208 4g2e_A Peroxiredoxin; redox pr 97.0 0.0018 6.3E-08 53.9 7.9 90 77-169 29-154 (157)
209 2e7p_A Glutaredoxin; thioredox 97.0 0.00098 3.3E-08 52.2 5.8 88 69-169 11-104 (116)
210 4gqc_A Thiol peroxidase, perox 97.0 0.002 6.9E-08 54.2 8.2 95 76-173 31-160 (164)
211 1n8j_A AHPC, alkyl hydroperoxi 97.0 0.0045 1.5E-07 53.0 10.4 93 77-172 29-155 (186)
212 2c0d_A Thioredoxin peroxidase 97.0 0.0047 1.6E-07 54.8 10.7 93 77-172 55-183 (221)
213 3v6c_B Ubiquitin; structural g 96.9 0.0081 2.8E-07 45.5 9.9 72 262-340 15-87 (91)
214 3keb_A Probable thiol peroxida 96.9 0.0041 1.4E-07 55.6 9.3 90 77-174 47-177 (224)
215 1ttz_A Conserved hypothetical 96.9 0.0047 1.6E-07 46.7 8.2 76 82-174 3-78 (87)
216 2pn8_A Peroxiredoxin-4; thiore 96.8 0.0081 2.8E-07 52.7 10.8 89 77-172 47-176 (211)
217 3ixr_A Bacterioferritin comigr 96.8 0.008 2.7E-07 51.0 10.4 92 76-170 49-175 (179)
218 2yzh_A Probable thiol peroxida 96.8 0.013 4.4E-07 49.0 11.2 88 77-171 46-170 (171)
219 2a4v_A Peroxiredoxin DOT5; yea 96.8 0.0089 3E-07 49.3 10.0 93 77-174 34-155 (159)
220 4dwf_A HLA-B-associated transc 96.7 0.011 3.8E-07 44.4 9.5 73 262-341 3-75 (90)
221 1v58_A Thiol:disulfide interch 96.7 0.0055 1.9E-07 55.0 8.9 92 76-175 95-235 (241)
222 2dzi_A Ubiquitin-like protein 96.7 0.014 4.6E-07 42.8 9.7 72 262-340 5-77 (81)
223 3uem_A Protein disulfide-isome 96.7 0.0068 2.3E-07 57.1 10.0 111 56-174 116-231 (361)
224 1ndd_A NEDD8, protein (ubiquit 96.7 0.012 4.1E-07 42.3 9.1 68 266-340 2-70 (76)
225 3a9j_A Ubiquitin; protein comp 96.7 0.01 3.5E-07 42.7 8.7 69 266-341 2-71 (76)
226 3p7x_A Probable thiol peroxida 96.6 0.0041 1.4E-07 52.0 7.1 87 77-170 45-165 (166)
227 3mtn_B UBA80, ubcep1, ubiquiti 96.6 0.01 3.5E-07 43.8 8.7 70 264-340 3-73 (85)
228 4hde_A SCO1/SENC family lipopr 96.6 0.016 5.5E-07 48.8 10.9 35 137-172 133-169 (170)
229 3qpm_A Peroxiredoxin; oxidored 96.6 0.0058 2E-07 54.9 8.2 87 77-170 76-203 (240)
230 1wjn_A Tubulin-folding protein 96.6 0.014 4.7E-07 44.9 9.2 78 262-341 7-91 (97)
231 2wyq_A HHR23A, UV excision rep 96.6 0.016 5.6E-07 42.8 9.4 73 262-340 3-78 (85)
232 3dbh_I NEDD8; cell cycle, acti 96.6 0.015 5E-07 43.4 9.1 72 262-340 10-82 (88)
233 1wyw_B Ubiquitin-like protein 96.5 0.015 5E-07 44.7 8.8 72 262-340 19-91 (97)
234 3phx_B Ubiquitin-like protein 96.5 0.023 7.8E-07 41.5 9.6 71 264-341 4-75 (79)
235 4f9z_D Endoplasmic reticulum r 96.5 0.043 1.5E-06 48.3 13.1 120 48-173 103-225 (227)
236 2hj8_A Interferon-induced 17 k 96.5 0.018 6.3E-07 43.2 9.2 70 264-340 4-74 (88)
237 1psq_A Probable thiol peroxida 96.5 0.019 6.5E-07 47.6 10.1 87 77-170 41-162 (163)
238 1eej_A Thiol:disulfide interch 96.5 0.014 4.7E-07 51.3 9.7 86 76-173 84-211 (216)
239 1wh3_A 59 kDa 2'-5'-oligoadeny 96.5 0.023 8E-07 42.2 9.6 72 262-340 5-77 (87)
240 2bwf_A Ubiquitin-like protein 96.4 0.017 5.8E-07 41.8 8.4 69 265-341 5-74 (77)
241 1uel_A HHR23B, UV excision rep 96.3 0.027 9.3E-07 43.0 9.5 69 266-340 2-73 (95)
242 1yx5_B Ubiquitin; proteasome, 96.3 0.021 7.2E-07 43.7 8.9 68 266-340 2-70 (98)
243 4eew_A Large proline-rich prot 96.3 0.026 8.9E-07 42.2 9.2 73 262-341 15-87 (88)
244 3tjj_A Peroxiredoxin-4; thiore 96.3 0.0065 2.2E-07 55.2 6.7 91 76-169 89-216 (254)
245 1uh6_A Ubiquitin-like 5; beta- 96.2 0.027 9.3E-07 43.8 9.0 74 261-341 25-99 (100)
246 3gyk_A 27KDA outer membrane pr 96.2 0.027 9.3E-07 47.1 9.9 85 76-173 20-173 (175)
247 4hcn_B Polyubiquitin, ubiquiti 96.2 0.023 7.8E-07 43.7 8.4 72 262-340 20-92 (98)
248 3zrd_A Thiol peroxidase; oxido 96.2 0.033 1.1E-06 48.2 10.3 86 76-168 76-199 (200)
249 3kp9_A Vkorc1/thioredoxin doma 96.1 0.0032 1.1E-07 58.6 3.8 89 64-168 185-275 (291)
250 3n3k_B Ubiquitin; hydrolase, p 96.1 0.022 7.6E-07 42.0 7.7 70 264-340 3-73 (85)
251 2uyz_B Small ubiquitin-related 96.1 0.037 1.3E-06 40.3 8.7 70 264-340 3-73 (79)
252 2faz_A Ubiquitin-like containi 96.0 0.038 1.3E-06 40.1 8.7 71 264-341 2-75 (78)
253 3k9o_B Ubiquitin, UBB+1; E2-25 96.0 0.038 1.3E-06 41.9 8.7 69 265-340 2-71 (96)
254 1q98_A Thiol peroxidase, TPX; 96.0 0.019 6.6E-07 47.8 7.5 74 77-157 42-148 (165)
255 4eo3_A Bacterioferritin comigr 95.9 0.011 3.8E-07 55.5 6.6 87 77-173 23-139 (322)
256 2ojr_A Ubiquitin; lanthide-bin 95.9 0.058 2E-06 42.4 9.6 71 263-340 34-105 (111)
257 1wy8_A NP95-like ring finger p 95.9 0.079 2.7E-06 39.5 10.0 73 262-341 5-80 (89)
258 1we6_A Splicing factor, putati 95.8 0.061 2.1E-06 42.2 9.6 71 263-340 26-101 (111)
259 1nm3_A Protein HI0572; hybrid, 95.8 0.052 1.8E-06 48.1 10.1 90 77-170 32-164 (241)
260 2d07_B Ubiquitin-like protein 95.8 0.069 2.3E-06 40.8 9.3 73 262-341 15-88 (93)
261 1tp9_A Peroxiredoxin, PRX D (t 95.8 0.025 8.4E-07 47.1 7.4 78 76-158 33-146 (162)
262 1wx7_A Ubiquilin 3; ubiquitin- 95.8 0.086 3E-06 40.9 10.1 71 262-340 15-86 (106)
263 1j8c_A Ubiquitin-like protein 95.7 0.089 3E-06 42.4 10.4 71 262-340 30-101 (125)
264 2kan_A Uncharacterized protein 95.7 0.064 2.2E-06 40.9 9.1 72 262-340 13-85 (94)
265 1wx8_A Riken cDNA 4931431F19; 95.7 0.046 1.6E-06 41.5 8.2 72 261-340 14-86 (96)
266 4fbj_B NEDD8; effector-HOST ta 95.7 0.052 1.8E-06 40.7 8.3 68 266-340 2-70 (88)
267 1hyu_A AHPF, alkyl hydroperoxi 95.7 0.085 2.9E-06 52.5 12.2 113 43-171 86-198 (521)
268 1wz0_A Ubiquitin-like protein 95.6 0.18 6E-06 39.4 11.2 73 262-341 22-95 (104)
269 2kdb_A Homocysteine-responsive 95.6 0.042 1.4E-06 42.5 7.5 72 262-339 21-98 (99)
270 1we7_A SF3A1 protein; structur 95.5 0.073 2.5E-06 42.1 9.0 71 263-340 24-105 (115)
271 1wia_A Hypothetical ubiquitin- 95.5 0.068 2.3E-06 40.5 8.5 70 262-340 5-75 (95)
272 1sif_A Ubiquitin; hydrophobic 95.5 0.068 2.3E-06 40.0 8.3 70 264-340 9-79 (88)
273 2k8s_A Thioredoxin; dimer, str 95.5 0.028 9.5E-07 40.9 6.0 60 82-152 4-66 (80)
274 3vdz_A Ubiquitin-40S ribosomal 95.5 0.069 2.3E-06 42.0 8.6 71 263-340 34-105 (111)
275 2klc_A Ubiquilin-1; ubiquitin- 95.5 0.093 3.2E-06 40.5 9.2 70 263-340 24-94 (101)
276 3plu_A Ubiquitin-like modifier 95.5 0.091 3.1E-06 40.2 8.8 71 262-339 19-90 (93)
277 2io0_B Small ubiquitin-related 95.5 0.13 4.4E-06 39.1 9.7 72 263-341 4-76 (91)
278 2v2g_A Peroxiredoxin 6; oxidor 95.4 0.065 2.2E-06 47.8 9.3 93 77-172 27-164 (233)
279 2fgx_A Putative thioredoxin; N 95.4 0.034 1.2E-06 43.7 6.5 76 80-168 30-106 (107)
280 1t3b_A Thiol:disulfide interch 95.4 0.076 2.6E-06 46.4 9.5 83 76-170 84-208 (211)
281 2kjr_A CG11242; UBL, ubiquitin 95.3 0.094 3.2E-06 40.2 8.7 76 262-339 13-92 (95)
282 2eke_C Ubiquitin-like protein 95.3 0.16 5.6E-06 39.7 10.1 72 261-340 28-100 (106)
283 2io1_B Small ubiquitin-related 95.3 0.12 4E-06 39.6 9.0 73 262-341 5-78 (94)
284 2kc2_A Talin-1, F1; FERM, adhe 95.2 0.14 4.7E-06 41.5 9.7 76 266-341 13-121 (128)
285 4a20_A Ubiquitin-like protein 95.2 0.1 3.5E-06 40.2 8.6 74 261-340 16-93 (98)
286 1yqb_A Ubiquilin 3; structural 95.1 0.14 4.7E-06 39.4 9.1 71 262-340 20-91 (100)
287 2hls_A Protein disulfide oxido 95.1 0.12 4.1E-06 46.1 10.0 86 75-173 22-117 (243)
288 1v86_A DNA segment, CHR 7, way 95.1 0.097 3.3E-06 39.9 8.1 70 261-339 14-84 (95)
289 3m62_B UV excision repair prot 95.0 0.082 2.8E-06 41.2 7.5 69 265-340 2-71 (106)
290 2k8h_A Small ubiquitin protein 94.9 0.14 4.7E-06 40.4 8.7 73 262-341 24-97 (110)
291 3b08_A Polyubiquitin-C, ubiqui 94.8 0.12 4.2E-06 42.1 8.7 70 264-340 76-146 (152)
292 1v2y_A 3300001G02RIK protein; 94.8 0.099 3.4E-06 40.9 7.4 72 263-340 6-93 (105)
293 2kdi_A Ubiquitin, vacuolar pro 94.7 0.16 5.5E-06 40.1 8.8 71 263-340 8-79 (114)
294 1wm3_A Ubiquitin-like protein 94.7 0.27 9.3E-06 35.3 9.2 68 265-339 2-70 (72)
295 2lxa_A Ubiquitin-like protein 94.7 0.13 4.4E-06 38.8 7.6 70 265-341 2-76 (87)
296 2wfc_A Peroxiredoxin 5, PRDX5; 94.6 0.18 6.2E-06 42.2 9.3 90 77-170 30-161 (167)
297 1wxv_A BAG-family molecular ch 94.6 0.26 8.7E-06 37.0 9.3 72 262-340 5-82 (92)
298 3a4r_A Nfatc2-interacting prot 94.6 0.33 1.1E-05 35.6 9.6 71 262-339 5-77 (79)
299 3u30_A Ubiquitin, linear DI-ub 94.5 0.16 5.5E-06 42.8 8.9 73 261-340 17-90 (172)
300 3h93_A Thiol:disulfide interch 94.5 0.14 4.7E-06 43.4 8.5 41 130-174 145-185 (192)
301 3sbc_A Peroxiredoxin TSA1; alp 94.4 0.2 6.8E-06 44.3 9.6 91 77-170 51-178 (216)
302 2gow_A HCG-1 protein, ubiquiti 94.4 0.26 9E-06 39.7 9.5 66 262-333 15-87 (125)
303 1se9_A Ubiquitin family; ubiqu 94.4 0.37 1.3E-05 38.9 10.2 66 263-334 15-87 (126)
304 3b08_A Polyubiquitin-C, ubiqui 94.4 0.19 6.4E-06 41.0 8.8 68 266-340 2-70 (152)
305 2cq9_A GLRX2 protein, glutared 94.2 0.088 3E-06 42.3 6.1 77 63-152 12-91 (130)
306 2kk8_A Uncharacterized protein 94.1 0.25 8.6E-06 36.7 8.2 70 264-340 10-81 (84)
307 1wgd_A Homocysteine-responsive 94.1 0.38 1.3E-05 36.1 9.3 72 263-340 6-83 (93)
308 1v5o_A 1700011N24RIK protein; 94.0 0.25 8.7E-06 38.0 8.3 72 263-340 6-82 (102)
309 3mng_A Peroxiredoxin-5, mitoch 94.0 0.22 7.4E-06 42.2 8.6 76 77-157 42-155 (173)
310 3rt3_B Ubiquitin-like protein 94.0 0.35 1.2E-05 40.0 9.7 70 264-340 81-151 (159)
311 2kd0_A LRR repeats and ubiquit 94.0 0.23 8E-06 36.8 7.8 67 265-339 13-80 (85)
312 1prx_A HORF6; peroxiredoxin, h 94.0 0.51 1.7E-05 41.5 11.3 92 78-172 30-168 (224)
313 1x1m_A Ubiquitin-like protein 93.7 0.3 1E-05 37.9 8.2 72 263-340 11-97 (107)
314 1wgh_A Ubiquitin-like 3, HCG-1 93.6 0.55 1.9E-05 37.3 9.7 73 262-340 14-96 (116)
315 3rt3_B Ubiquitin-like protein 93.5 0.35 1.2E-05 40.0 9.0 70 265-340 3-74 (159)
316 3b1l_X E3 ubiquitin-protein li 92.5 0.014 4.7E-07 42.3 0.0 67 266-339 2-69 (76)
317 3gv1_A Disulfide interchange p 93.4 0.037 1.2E-06 45.9 2.6 43 127-175 99-141 (147)
318 2l7r_A Ubiquitin-like protein 93.3 0.37 1.3E-05 36.3 8.0 68 264-340 19-87 (93)
319 3tue_A Tryparedoxin peroxidase 93.2 0.39 1.3E-05 42.5 9.1 91 77-170 55-182 (219)
320 3l0w_B Monoubiquitinated proli 93.2 0.47 1.6E-05 40.1 9.2 68 266-340 2-70 (169)
321 2al3_A TUG long isoform; TUG U 93.1 0.33 1.1E-05 36.8 7.2 67 266-339 11-78 (90)
322 2daf_A FLJ35834 protein; hypot 93.1 0.66 2.3E-05 36.9 9.2 71 263-340 14-86 (118)
323 3uma_A Hypothetical peroxiredo 93.0 0.41 1.4E-05 40.8 8.7 76 77-157 55-166 (184)
324 3hd5_A Thiol:disulfide interch 92.9 0.36 1.2E-05 40.9 8.2 22 77-98 24-45 (195)
325 1wgg_A Ubiquitin carboxyl-term 92.7 0.26 8.7E-06 37.6 6.3 69 262-339 5-75 (96)
326 2kj6_A Tubulin folding cofacto 92.7 1.1 3.6E-05 34.4 9.8 76 262-339 12-92 (97)
327 2daj_A KIAA0977 protein, COBL- 92.7 0.64 2.2E-05 34.7 8.0 68 262-333 8-75 (91)
328 1ego_A Glutaredoxin; electron 92.6 0.27 9.1E-06 35.5 6.1 73 82-170 3-81 (85)
329 3q3f_A Ribonuclease/ubiquitin 92.6 0.35 1.2E-05 41.8 7.7 70 264-340 105-175 (189)
330 3m63_B Ubiquitin domain-contai 92.3 0.19 6.4E-06 38.8 5.0 69 264-340 28-97 (101)
331 3kyd_D Small ubiquitin-related 92.1 1.2 4E-05 35.3 9.6 72 262-340 38-110 (115)
332 1v5t_A 8430435I17RIK protein; 91.8 0.71 2.4E-05 34.5 7.7 71 263-339 6-79 (90)
333 1xcc_A 1-Cys peroxiredoxin; un 91.4 0.58 2E-05 41.0 7.9 89 77-172 29-165 (220)
334 3ai5_A Yeast enhanced green fl 91.3 0.96 3.3E-05 42.0 9.6 72 262-340 231-303 (307)
335 4a3p_A Ubiquitin carboxyl-term 91.2 0.41 1.4E-05 42.1 6.8 70 270-340 134-206 (217)
336 3pge_A SUMO-modified prolifera 91.2 1.2 4.1E-05 38.7 9.5 71 262-340 27-98 (200)
337 4b6w_A Tubulin-specific chaper 90.8 1.4 4.8E-05 32.8 8.4 72 264-340 2-81 (86)
338 3jyu_A Ubiquitin carboxyl-term 90.6 0.93 3.2E-05 40.3 8.5 64 276-340 153-218 (231)
339 1oqy_A HHR23A, UV excision rep 90.5 0.63 2.2E-05 44.4 7.7 69 263-337 6-77 (368)
340 3u30_A Ubiquitin, linear DI-ub 90.5 0.9 3.1E-05 38.1 8.0 70 264-340 96-166 (172)
341 2znm_A Thiol:disulfide interch 90.5 1.8 6.1E-05 36.3 10.0 40 129-174 142-181 (195)
342 1wf9_A NPL4 family protein; be 90.3 0.99 3.4E-05 34.9 7.5 74 265-340 8-92 (107)
343 2ht9_A Glutaredoxin-2; thiored 90.3 0.77 2.6E-05 37.6 7.2 75 65-152 36-113 (146)
344 3tix_A Ubiquitin-like protein 90.3 0.96 3.3E-05 39.2 7.9 71 261-339 54-125 (207)
345 2pwj_A Mitochondrial peroxired 90.2 1.3 4.5E-05 36.8 8.8 56 77-135 42-102 (171)
346 3u5e_m 60S ribosomal protein L 90.0 0.057 2E-06 43.6 0.0 68 266-340 2-70 (128)
347 3ic4_A Glutaredoxin (GRX-1); s 89.8 1.7 5.9E-05 31.7 8.3 72 82-168 14-90 (92)
348 2dzj_A Synaptic glycoprotein S 89.6 1.1 3.8E-05 33.4 7.0 71 265-339 11-85 (88)
349 3q6o_A Sulfhydryl oxidase 1; p 89.5 1.9 6.6E-05 37.7 9.7 78 75-165 154-231 (244)
350 1kte_A Thioltransferase; redox 89.3 0.88 3E-05 34.2 6.4 60 82-152 14-79 (105)
351 3rhb_A ATGRXC5, glutaredoxin-C 89.2 1.5 5.2E-05 33.6 7.8 72 65-152 6-84 (113)
352 1v6e_A Cytoskeleton-associated 89.1 2 7E-05 32.2 8.3 74 264-339 7-84 (95)
353 2jxx_A Nfatc2-interacting prot 89.1 3.5 0.00012 31.5 9.5 70 262-338 23-94 (97)
354 1r7h_A NRDH-redoxin; thioredox 88.4 2.4 8.3E-05 29.2 7.9 70 82-168 3-73 (75)
355 1t0y_A Tubulin folding cofacto 88.2 3.3 0.00011 32.7 9.3 76 263-340 5-84 (122)
356 2lqo_A Putative glutaredoxin R 88.0 1.8 6.2E-05 32.6 7.2 72 83-173 7-84 (92)
357 3c1r_A Glutaredoxin-1; oxidize 87.5 1.6 5.4E-05 34.1 6.9 76 61-151 8-92 (118)
358 1fov_A Glutaredoxin 3, GRX3; a 87.3 1.7 5.9E-05 30.7 6.6 54 82-142 3-56 (82)
359 3u5c_f 40S ribosomal protein S 86.6 0.13 4.5E-06 42.9 0.0 68 266-340 2-70 (152)
360 2rem_A Disulfide oxidoreductas 86.6 3.5 0.00012 34.3 9.2 39 129-174 147-185 (193)
361 1h75_A Glutaredoxin-like prote 86.2 1.9 6.4E-05 30.5 6.2 66 82-164 3-69 (81)
362 2dzm_A FAS-associated factor 1 85.9 3.9 0.00013 31.4 8.2 70 264-340 9-79 (100)
363 2yan_A Glutaredoxin-3; oxidore 85.7 2.9 9.9E-05 31.6 7.4 72 68-151 7-82 (105)
364 2hze_A Glutaredoxin-1; thiored 85.6 1.3 4.6E-05 34.1 5.5 63 82-152 21-86 (114)
365 3msz_A Glutaredoxin 1; alpha-b 85.5 1.7 5.8E-05 31.2 5.8 60 82-152 6-72 (89)
366 2wci_A Glutaredoxin-4; redox-a 84.3 2.8 9.7E-05 33.8 7.1 67 65-143 22-96 (135)
367 2fnj_B Transcription elongatio 84.2 2.1 7.2E-05 34.0 6.0 67 267-340 3-78 (118)
368 3bj5_A Protein disulfide-isome 84.0 6.3 0.00022 32.0 9.2 63 111-174 62-128 (147)
369 2klx_A Glutaredoxin; thioredox 83.5 2.3 8E-05 30.8 5.8 53 82-143 8-61 (89)
370 2khp_A Glutaredoxin; thioredox 83.4 2.1 7.3E-05 31.2 5.6 51 82-142 8-61 (92)
371 3nzn_A Glutaredoxin; structura 83.4 8 0.00027 28.9 9.0 73 82-168 24-101 (103)
372 1z6m_A Conserved hypothetical 83.3 7.6 0.00026 31.7 9.6 33 129-168 141-173 (175)
373 1wik_A Thioredoxin-like protei 83.1 3.5 0.00012 31.5 6.9 57 74-142 11-75 (109)
374 4dbg_A Ranbp-type and C3HC4-ty 81.9 6.5 0.00022 30.4 7.9 72 261-339 19-96 (105)
375 3shq_A UBLCP1; phosphatase, hy 78.1 6 0.00021 36.8 7.8 71 263-339 4-76 (320)
376 2in3_A Hypothetical protein; D 77.7 5.5 0.00019 33.8 7.0 46 128-175 167-212 (216)
377 3ctg_A Glutaredoxin-2; reduced 77.3 5.2 0.00018 31.7 6.3 68 64-142 23-99 (129)
378 3ipz_A Monothiol glutaredoxin- 76.9 6.1 0.00021 30.2 6.4 66 66-143 6-79 (109)
379 3qmx_A Glutaredoxin A, glutare 75.9 7.4 0.00025 29.2 6.5 53 82-142 18-72 (99)
380 3gx8_A Monothiol glutaredoxin- 75.6 9.2 0.00031 29.9 7.3 64 68-143 6-80 (121)
381 4f82_A Thioredoxin reductase; 75.5 9.2 0.00031 32.3 7.7 56 77-135 46-106 (176)
382 4ajy_B Transcription elongatio 73.8 9.3 0.00032 30.2 6.7 66 269-341 5-79 (118)
383 1sji_A Calsequestrin 2, calseq 72.8 12 0.00043 34.4 8.6 87 82-173 249-346 (350)
384 2wem_A Glutaredoxin-related pr 72.7 7.5 0.00026 30.4 6.0 67 65-143 7-82 (118)
385 3kzq_A Putative uncharacterize 70.1 8.9 0.00031 32.5 6.5 45 128-174 160-204 (208)
386 3h8q_A Thioredoxin reductase 3 70.0 18 0.0006 27.6 7.6 70 67-152 6-81 (114)
387 3us3_A Calsequestrin-1; calciu 67.6 23 0.00079 32.9 9.3 94 78-174 247-349 (367)
388 3l4n_A Monothiol glutaredoxin- 65.4 14 0.00049 29.2 6.3 63 69-143 5-76 (127)
389 4dvc_A Thiol:disulfide interch 60.9 10 0.00035 30.9 4.8 43 127-173 140-182 (184)
390 3feu_A Putative lipoprotein; a 60.6 10 0.00035 31.7 4.9 42 128-173 143-184 (185)
391 3ivf_A Talin-1; FERM domain, c 60.5 38 0.0013 31.5 9.3 71 263-333 84-157 (371)
392 2r2j_A Thioredoxin domain-cont 60.3 35 0.0012 31.7 9.1 103 63-174 222-330 (382)
393 3f4s_A Alpha-DSBA1, putative u 59.6 14 0.00048 32.2 5.7 46 128-174 161-212 (226)
394 3zyw_A Glutaredoxin-3; metal b 57.4 30 0.001 26.4 6.7 66 66-143 4-77 (111)
395 1t1v_A SH3BGRL3, SH3 domain-bi 57.4 19 0.00066 26.2 5.4 56 81-143 4-66 (93)
396 3ivf_A Talin-1; FERM domain, c 55.6 25 0.00086 32.8 7.1 71 264-337 3-79 (371)
397 1aba_A Glutaredoxin; electron 55.2 21 0.00073 25.4 5.3 49 85-143 5-70 (87)
398 2h8l_A Protein disulfide-isome 53.3 99 0.0034 26.6 10.3 56 114-173 169-230 (252)
399 3onh_A Ubiquitin-activating en 53.1 16 0.00055 29.2 4.4 52 285-338 20-74 (127)
400 1h4r_A Merlin; FERM, neurofibr 51.9 49 0.0017 29.9 8.3 69 262-333 20-88 (314)
401 2ct6_A SH3 domain-binding glut 51.6 26 0.00089 26.6 5.5 56 81-143 10-78 (111)
402 1xiy_A Peroxiredoxin, pfaop; a 51.5 36 0.0012 28.6 6.8 57 77-136 42-104 (182)
403 3bci_A Disulfide bond protein 51.5 20 0.00068 29.5 5.1 39 128-173 140-178 (186)
404 2h8l_A Protein disulfide-isome 51.4 93 0.0032 26.8 9.8 93 65-170 12-110 (252)
405 2xzm_9 RPS31E; ribosome, trans 49.9 3.4 0.00012 35.5 0.0 63 266-339 2-64 (189)
406 3gmf_A Protein-disulfide isome 49.6 21 0.00072 30.5 5.1 41 128-175 158-199 (205)
407 3t58_A Sulfhydryl oxidase 1; o 49.4 38 0.0013 33.4 7.6 78 76-166 155-232 (519)
408 2l4c_A Endoplasmic reticulum r 49.4 90 0.0031 24.2 11.5 99 54-168 16-119 (124)
409 3qij_A Protein 4.1; cytoskelet 48.9 30 0.001 31.3 6.3 69 262-331 15-83 (296)
410 3gha_A Disulfide bond formatio 48.8 25 0.00085 29.8 5.4 41 128-175 154-194 (202)
411 3hz8_A Thiol:disulfide interch 47.0 18 0.00062 30.2 4.2 40 77-122 23-65 (193)
412 3v7o_A Minor nucleoprotein VP3 46.2 4.2 0.00014 35.6 0.0 70 262-339 19-89 (227)
413 1un2_A DSBA, thiol-disulfide i 45.8 9.4 0.00032 32.5 2.2 45 78-122 113-157 (197)
414 3gn3_A Putative protein-disulf 45.7 14 0.00048 31.0 3.3 37 128-168 145-181 (182)
415 2i1j_A Moesin; FERM, coiled-co 45.2 77 0.0026 31.7 9.1 69 263-333 3-71 (575)
416 1vkf_A Glycerol uptake operon 45.1 12 0.0004 32.1 2.6 72 65-146 43-114 (188)
417 4gqw_A CBS domain-containing p 44.9 48 0.0016 25.4 6.3 104 61-172 20-145 (152)
418 1ef1_A Moesin; membrane, FERM 43.9 81 0.0028 28.0 8.4 67 265-333 2-68 (294)
419 3hz8_A Thiol:disulfide interch 41.0 44 0.0015 27.8 5.7 41 127-174 144-184 (193)
420 2p9m_A Hypothetical protein MJ 40.7 47 0.0016 25.2 5.5 102 61-170 21-136 (138)
421 2o16_A Acetoin utilization pro 38.7 79 0.0027 24.9 6.8 102 63-173 20-138 (160)
422 1q0v_A Hydrophilic protein; ha 37.6 12 0.00039 27.6 1.2 21 202-222 50-70 (81)
423 1nm3_A Protein HI0572; hybrid, 37.6 77 0.0026 27.0 6.9 67 65-143 153-225 (241)
424 3sl7_A CBS domain-containing p 37.5 56 0.0019 26.0 5.7 64 103-174 97-160 (180)
425 3gl5_A Putative DSBA oxidoredu 35.8 74 0.0025 27.6 6.5 41 129-175 175-215 (239)
426 3kts_A Glycerol uptake operon 35.4 23 0.00079 30.3 3.0 99 64-173 40-150 (192)
427 2d3g_P Ubiquitin interacting m 35.3 30 0.001 19.5 2.4 17 206-222 3-19 (26)
428 3uf8_A Ubiquitin-like protein 35.3 1.8E+02 0.0061 24.8 8.8 74 255-339 14-89 (209)
429 2yzi_A Hypothetical protein PH 34.9 31 0.0011 26.3 3.5 102 63-173 22-132 (138)
430 3c7m_A Thiol:disulfide interch 33.7 18 0.00061 29.7 2.0 41 129-173 154-194 (195)
431 3lqn_A CBS domain protein; csg 32.5 32 0.0011 26.7 3.3 103 61-173 30-146 (150)
432 1q0v_A Hydrophilic protein; ha 32.3 24 0.00082 25.9 2.2 22 202-223 7-28 (81)
433 3pvl_A Myosin VIIA isoform 1; 31.6 87 0.003 31.8 7.0 48 264-311 263-310 (655)
434 3kxr_A Magnesium transporter, 30.5 51 0.0018 27.8 4.5 102 64-173 70-177 (205)
435 3tdg_A DSBG, putative uncharac 29.6 24 0.00083 31.9 2.2 24 76-99 145-168 (273)
436 1u6t_A SH3 domain-binding glut 29.3 1.1E+02 0.0036 24.0 5.7 58 81-143 2-70 (121)
437 3ix6_A TS, tsase, thymidylate 29.2 12 0.00039 35.5 0.0 69 262-338 19-88 (360)
438 2wul_A Glutaredoxin related pr 28.6 74 0.0025 24.7 4.7 68 69-152 11-87 (118)
439 1yav_A Hypothetical protein BS 28.5 69 0.0024 25.1 4.7 102 62-173 30-145 (159)
440 4da1_A Protein phosphatase 1K, 27.4 13 0.00044 35.2 0.0 69 261-337 27-96 (389)
441 2xhf_A Peroxiredoxin 5; oxidor 26.7 1.2E+02 0.0041 25.0 6.0 67 77-146 41-110 (171)
442 3ed3_A Protein disulfide-isome 26.3 3.2E+02 0.011 24.2 9.3 119 45-175 131-269 (298)
443 2imf_A HCCA isomerase, 2-hydro 25.8 94 0.0032 25.7 5.3 40 128-174 158-197 (203)
444 3ec3_A Protein disulfide-isome 25.8 3.1E+02 0.011 23.4 10.5 93 65-170 12-112 (250)
445 3l9v_A Putative thiol-disulfid 25.6 42 0.0014 27.8 2.9 43 79-121 15-59 (189)
446 1vlu_A Gamma-glutamyl phosphat 25.4 34 0.0012 33.2 2.6 47 50-96 337-383 (468)
447 3nqr_A Magnesium and cobalt ef 25.3 1.1E+02 0.0038 22.8 5.2 97 63-168 20-124 (127)
448 2axo_A Hypothetical protein AT 24.8 1.4E+02 0.0048 26.7 6.4 83 80-174 44-144 (270)
449 3dwa_A SUBB, subtilase cytotox 24.8 1.6E+02 0.0053 23.2 5.7 43 63-116 53-98 (126)
450 3au4_A Myosin-X; protein-prote 24.6 1.4E+02 0.0049 29.2 7.1 48 264-311 216-264 (555)
451 1rlf_A RLF, RLF-RBD; signal tr 24.5 2.2E+02 0.0075 21.1 8.0 54 261-314 2-61 (90)
452 1pbj_A Hypothetical protein; s 24.4 79 0.0027 23.3 4.1 97 62-168 15-120 (125)
453 3ktb_A Arsenical resistance op 24.3 79 0.0027 24.3 4.0 36 127-168 65-101 (106)
454 4ghk_A Gamma-glutamyl phosphat 24.1 21 0.00074 34.4 0.9 39 52-90 338-376 (444)
455 2ptl_A Protein L; binding prot 22.8 1.9E+02 0.0066 19.9 5.6 35 263-297 18-54 (78)
456 3kgk_A Arsenical resistance op 22.2 86 0.0029 24.3 3.8 37 127-169 62-99 (110)
457 4fry_A Putative signal-transdu 22.2 70 0.0024 24.9 3.6 100 60-170 25-135 (157)
458 3p04_A Uncharacterized BCR; SE 22.1 37 0.0013 25.2 1.7 36 60-95 8-45 (87)
459 2l76_A Nfatc2-interacting prot 22.0 2.5E+02 0.0087 21.0 9.9 67 262-337 19-87 (95)
460 2j9l_A Chloride channel protei 21.7 86 0.0029 25.0 4.1 62 103-173 107-168 (185)
461 3sza_A Aldehyde dehydrogenase, 21.7 31 0.0011 33.5 1.5 40 52-91 349-388 (469)
462 1y5h_A Hypothetical protein RV 21.6 71 0.0024 24.0 3.4 97 62-167 22-128 (133)
463 3lhh_A CBS domain protein; str 21.5 78 0.0027 25.4 3.8 98 64-170 60-164 (172)
464 1wgr_A Growth factor receptor- 21.2 2.7E+02 0.0092 21.0 6.6 53 262-314 7-59 (100)
465 3l9v_A Putative thiol-disulfid 21.2 1.3E+02 0.0043 24.7 5.1 43 127-173 135-183 (189)
466 1wj6_A KIAA0049 protein, RSGI 21.1 61 0.0021 24.7 2.7 33 57-89 64-96 (101)
467 3ec3_A Protein disulfide-isome 20.9 3.4E+02 0.012 23.1 8.1 58 113-174 168-229 (250)
468 4dxa_B KREV interaction trappe 20.7 75 0.0026 28.9 3.8 52 261-314 2-55 (322)
469 2kmm_A Guanosine-3',5'-BIS(dip 20.7 1.3E+02 0.0045 20.4 4.3 27 266-294 2-28 (73)
470 4h7n_A Aldehyde dehydrogenase; 20.6 28 0.00097 33.8 0.9 39 52-90 363-401 (474)
471 1o20_A Gamma-glutamyl phosphat 20.3 30 0.001 33.1 1.0 46 51-96 320-365 (427)
472 3lns_A Benzaldehyde dehydrogen 20.2 35 0.0012 32.9 1.5 45 52-96 357-402 (457)
473 2bps_A YUKD protein; ubiquitin 20.1 2.5E+02 0.0086 20.2 7.3 72 264-339 4-79 (81)
No 1
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=8.5e-31 Score=229.62 Aligned_cols=134 Identities=20% Similarity=0.252 Sum_probs=124.7
Q ss_pred ccchhHHHHHHhhCCCCcCcccccHHHHHHHH----HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEE
Q 019378 43 TADSSRDNLASLYRPPFHLMFNGSFEKAKDAA----SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQ 118 (342)
Q Consensus 43 ~~~~~~~~l~~~f~pp~~~~f~gs~~eA~~~A----k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~ 118 (342)
++..+.+.|+++||++||.||.|+|++|++.| ++++||||||||+++|.+|+.||++||||++|+++|++|||+|+
T Consensus 16 ~~~~F~~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~ 95 (178)
T 2ec4_A 16 ALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWA 95 (178)
T ss_dssp HHHHHHHHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEE
Confidence 45779999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred eecCChh-------------HHHHHHh---CCCCCCcEEEEEeCCCC--ceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378 119 VYDDTSE-------------GKKVCTY---YKLDSIPVVLVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGGP 176 (342)
Q Consensus 119 ~~~~s~e-------------g~~~~~~---y~v~~~P~l~ii~p~tG--~~l~~~~G~~~~~~~l~~L~~~l~~~~ 176 (342)
+|+++++ |.+++.. |++.+||+++||+|+.+ +++.++.|.+++++|++.|..+++.+.
T Consensus 96 ~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e~~~ 171 (178)
T 2ec4_A 96 WDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFT 171 (178)
T ss_dssp EECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999 5566655 99999999999998643 578999999999999999999999763
No 2
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.96 E-value=2.5e-29 Score=215.22 Aligned_cols=133 Identities=43% Similarity=0.853 Sum_probs=126.5
Q ss_pred ccchhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC
Q 019378 43 TADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD 122 (342)
Q Consensus 43 ~~~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~ 122 (342)
+++++...|+.+|+||+.++|.++|++|++.|++++|||||+|+++||.+|+.|+++||+|++|.++|++|||+|++|++
T Consensus 7 ~~~~~~~~l~~lf~~p~~~~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~ 86 (153)
T 2dlx_A 7 GIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHD 86 (153)
T ss_dssp CCCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESS
T ss_pred CCCchhhHHHHhhCCchhhhcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecC
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378 123 TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 176 (342)
Q Consensus 123 s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~~ 176 (342)
++++..+++.|++..+|+++||+|.+|+.+.+|.| +++++|+..|..+++.+.
T Consensus 87 ~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~ 139 (153)
T 2dlx_A 87 SEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHG 139 (153)
T ss_dssp SHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTC
T ss_pred CHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999987988888877 999999999999998874
No 3
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.87 E-value=5.4e-22 Score=160.07 Aligned_cols=86 Identities=27% Similarity=0.484 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhh
Q 019378 250 YPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFED 329 (342)
Q Consensus 250 ~~~l~~EP~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e 329 (342)
...||+||+.+.+++|+|+||||||+|++|||+.+++|++||+||.++ ++....|+|+++|||+. +..+.++||+|
T Consensus 9 ~~~lp~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~--l~~d~~~TL~e 84 (109)
T 2cr5_A 9 VPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV--GYHKSLYRLSTSFPRRA--LEVEGGSSLED 84 (109)
T ss_dssp CCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH--TCCTTTEEEECSSSCCB--CCCCSSCBHHH
T ss_pred cccCCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEEeCCCCcC--CCCCCCCCHHH
Confidence 467999999888899999999999999999999999999999999986 66678999999999987 55588999999
Q ss_pred cCCcCceEEE
Q 019378 330 SGLANAMISV 339 (342)
Q Consensus 330 ~gL~~~~l~v 339 (342)
+||.|+++++
T Consensus 85 ~gL~p~a~L~ 94 (109)
T 2cr5_A 85 IGITVDTVLN 94 (109)
T ss_dssp HTCSSCEEEE
T ss_pred cCCCCCeEEE
Confidence 9999765443
No 4
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.79 E-value=4.9e-19 Score=142.64 Aligned_cols=84 Identities=25% Similarity=0.352 Sum_probs=71.2
Q ss_pred CCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-c
Q 019378 257 PKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-A 335 (342)
Q Consensus 257 P~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~ 335 (342)
|+.+.++.|+||||||||+|++|||+.+++|++||+||.++. +....+|.|+++|||+.+.. .|.++||+|+||.| +
T Consensus 6 p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~-~~~~~~f~L~t~fPrk~l~~-~d~~~TL~elgL~psa 83 (109)
T 2dzk_A 6 SGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTV-GNTYGNFSLATMFPRREFTR-EDYKRRLLDLELAPSA 83 (109)
T ss_dssp CCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHH-TTSSCSCEEECSSSCCBCCT-TTTTSBTGGGTCSSEE
T ss_pred CCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcc-CCCCCceEEEcCCCCcCCcc-cccCCCHHHCCCCCce
Confidence 344456789999999999999999999999999999999974 44568999999999997332 36899999999997 6
Q ss_pred eEEEEeC
Q 019378 336 MISVTWE 342 (342)
Q Consensus 336 ~l~v~w~ 342 (342)
+|+|+|.
T Consensus 84 ~L~v~~~ 90 (109)
T 2dzk_A 84 SVVLLPA 90 (109)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 6788873
No 5
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.78 E-value=8e-19 Score=134.93 Aligned_cols=77 Identities=17% Similarity=0.391 Sum_probs=66.6
Q ss_pred CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCce-EEE
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISV 339 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~-l~v 339 (342)
.+++|+|+||||||+|++|||+.+++|++||+||.+. ++...+|.|+++|||+.+. ..|.++||+|+||.|++ |+|
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~l~-~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK--GFPWDEYKLLSTFPRRDVT-QLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT--TCCTTTEEEECSSSCCBGG-GSCTTSBTTTTTCCSEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc--CCCCCCeEEEeCCCCCCCc-CCCCCCCHHHCCCCCCCEEEE
Confidence 3579999999999999999999999999999999985 6678999999999999732 34789999999999755 554
Q ss_pred E
Q 019378 340 T 340 (342)
Q Consensus 340 ~ 340 (342)
+
T Consensus 81 e 81 (84)
T 3qx1_A 81 E 81 (84)
T ss_dssp E
T ss_pred E
Confidence 3
No 6
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.78 E-value=4.4e-19 Score=146.73 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=71.1
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEe
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 341 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w 341 (342)
.+.|+|+||||||+|+++||+.+++|++||+||.++..++....|.|+++|||+. +. +.++||+|+||.|++|+++|
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~--l~-d~~~TL~eagL~psavl~k~ 126 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKE--LA-DENQTLKEANLLNAVIVQRL 126 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEE--CC-STTCBHHHHTCSSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCC--CC-CCCCcHHHCCCcCceEEEEe
Confidence 4689999999999999999999999999999999986655678999999999986 54 67999999999999999999
Q ss_pred C
Q 019378 342 E 342 (342)
Q Consensus 342 ~ 342 (342)
.
T Consensus 127 ~ 127 (127)
T 1s3s_G 127 T 127 (127)
T ss_dssp C
T ss_pred C
Confidence 5
No 7
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.74 E-value=5.7e-18 Score=139.34 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=70.3
Q ss_pred CCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccC-CCcCCChhhcCCcC-
Q 019378 257 PKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLD-YDSKLTFEDSGLAN- 334 (342)
Q Consensus 257 P~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~-~~~~~Tl~e~gL~~- 334 (342)
|..+..+.|+|+||||||+|++|||+.+++|++||+||.++ ++....|.|+++|||+. +. .|.++||+|+||.|
T Consensus 36 ~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~--~~~~~~F~L~t~fPrk~--l~~~d~~~TL~e~gL~ps 111 (124)
T 1wj4_A 36 GIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK--GYPNERFELLTNFPRRK--LSHLDYDITLQEAGLCPQ 111 (124)
T ss_dssp CCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCE--ETSSCSSSCTTTTTCCSS
T ss_pred ccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEecCCCCcC--CccCCCCCCHHHCCCCCc
Confidence 34455789999999999999999999999999999999986 66778999999999997 43 47899999999996
Q ss_pred ceEEEEe
Q 019378 335 AMISVTW 341 (342)
Q Consensus 335 ~~l~v~w 341 (342)
++|+|++
T Consensus 112 a~Liv~~ 118 (124)
T 1wj4_A 112 ETVFVQE 118 (124)
T ss_dssp BCCEEEE
T ss_pred eEEEEEE
Confidence 6677764
No 8
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.50 E-value=6.2e-14 Score=120.30 Aligned_cols=114 Identities=11% Similarity=0.195 Sum_probs=100.5
Q ss_pred CcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------
Q 019378 61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------- 126 (342)
Q Consensus 61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------- 126 (342)
.....+|++++..|+.++|++||+|+.+||.+|+.|...+|.++.+.+.++++|+++.++++....
T Consensus 30 ~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~ 109 (172)
T 3f9u_A 30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTER 109 (172)
T ss_dssp CCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEE
T ss_pred ccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhh
Confidence 345678999999999999999999999999999999999999999999999999999999875431
Q ss_pred ----------HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCC-hHHHHHHHHhhhhcC
Q 019378 127 ----------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ-PESLLEDLVPFMDGG 175 (342)
Q Consensus 127 ----------~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~-~~~~l~~L~~~l~~~ 175 (342)
.-.+..|++..+|+++|||+ +|+++.++.|..+ +++|+..|...++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~-~G~~~~~~~G~~~~~~~l~~~l~~~l~~~ 168 (172)
T 3f9u_A 110 TLRTVGDKWSYLQRVKFGANAQPFYVLIDN-EGNPLNKSYAYDEDISKYINFLQTGLENY 168 (172)
T ss_dssp EEEEHHHHHHHHHHHHHSCCCSSEEEEECT-TSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHcCCCCcceEEEECC-CCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence 11167899999999999997 7999988899998 999999999888753
No 9
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=5.9e-13 Score=108.36 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=102.3
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
+...+|++++..|..++|++||+|+++||..|+.+...++.++.+.++++.+++++.++.+..+...++..|++..+|++
T Consensus 11 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~ 90 (130)
T 2kuc_A 11 FRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTL 90 (130)
T ss_dssp CBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEE
T ss_pred cccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEE
Confidence 45789999999999999999999999999999999988888899999999999999999887677889999999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+|+++ +|+++.++.|..+.++|...|...+..
T Consensus 91 ~~~d~-~G~~~~~~~G~~~~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 91 LFINS-SGEVVYRLVGAEDAPELLKKVKLGVES 122 (130)
T ss_dssp EEECT-TSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred EEECC-CCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence 99986 799999999999999999888887764
No 10
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.46 E-value=1.2e-13 Score=117.34 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=97.9
Q ss_pred HhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHh
Q 019378 53 SLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTY 132 (342)
Q Consensus 53 ~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~ 132 (342)
..|+. .+-+..+|++|++.|++++|++||+|+.+||.+|+.|...++.++++.++++.+||.+.+|.+..+ .+..
T Consensus 21 ~~~~~--~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~---~~~~ 95 (151)
T 3ph9_A 21 RGWGD--DITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTD---KNLS 95 (151)
T ss_dssp TTSCT--TSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSC---GGGC
T ss_pred ccccC--CCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchh---hHhh
Confidence 44443 345778999999999999999999999999999999999999999999999889999988754333 3567
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCC-------C---ChHHHHHHHHhhhhcC
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGM-------V---QPESLLEDLVPFMDGG 175 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~-------~---~~~~~l~~L~~~l~~~ 175 (342)
|++.++|+++|+++ +|+++.++.|. . +.+.+|+.+..++.+.
T Consensus 96 ~~v~~~PT~~f~~~-~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~ 147 (151)
T 3ph9_A 96 PDGQYVPRIMFVDP-SLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLI 147 (151)
T ss_dssp TTCCCSSEEEEECT-TSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred cCCCCCCEEEEECC-CCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHH
Confidence 89999999999997 69999899997 3 4567777777777654
No 11
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.45 E-value=1.3e-12 Score=110.45 Aligned_cols=107 Identities=10% Similarity=0.163 Sum_probs=97.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh---------hHHHHHHhCC
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS---------EGKKVCTYYK 134 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~---------eg~~~~~~y~ 134 (342)
.++.+++..|+.++|++||+|+ ++||.+|..+...++.++.+.++.+.+|+++.+|.+.. ....++..|+
T Consensus 34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~ 113 (154)
T 2ju5_A 34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK 113 (154)
T ss_dssp ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC
Confidence 8899999999999999999999 89999999999999999999999888999999998763 3567899999
Q ss_pred CCCCcEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhhhh
Q 019378 135 LDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMD 173 (342)
Q Consensus 135 v~~~P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~l~ 173 (342)
+..+|+++|||+ +|+++.++ |.. +++.|+..|...+.
T Consensus 114 v~~~Pt~~~~d~-~G~~~~~~-G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 114 VTGFPELVFIDA-EGKQLARM-GFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp CCSSSEEEEECT-TCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcC-CCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence 999999999997 79999999 998 89999998887765
No 12
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=99.11 E-value=2e-14 Score=117.29 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=102.4
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
|..+ .+++..|..++|++||+|+++||..|+.+...++.++.+.+.+..+++++.++++..+...+++.|++..+|+++
T Consensus 5 w~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~ 83 (130)
T 2lst_A 5 WYPY-PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFV 83 (130)
Confidence 4444 899999999999999999999999999999999999999999999999999999877888899999999999999
Q ss_pred EEeCCCCce--EEEEeCCCChHHHHHHHHhhhhcCC
Q 019378 143 VVDPITGQK--MRSWCGMVQPESLLEDLVPFMDGGP 176 (342)
Q Consensus 143 ii~p~tG~~--l~~~~G~~~~~~~l~~L~~~l~~~~ 176 (342)
|+++.+|++ +.++.|..+++.|...|...+....
T Consensus 84 ~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~ 119 (130)
T 2lst_A 84 FLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGG 119 (130)
Confidence 999878998 8899999999999988888887653
No 13
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=99.40 E-value=8.9e-13 Score=114.52 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=90.7
Q ss_pred cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhC------
Q 019378 60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY------ 133 (342)
Q Consensus 60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y------ 133 (342)
++=+...+++|++.|++++|++||+|+.+||.+|+.|...+|.+++|.++++++||++.+|.+.. ..++..|
T Consensus 21 ~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~--~~l~~~y~~~~q~ 98 (173)
T 3ira_A 21 PVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREER--PDIDNIYMTVCQI 98 (173)
T ss_dssp SSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTC--HHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCccc--CcHHHHHHHHHHH
Confidence 44466778999999999999999999999999999999999999999999999999999998742 2344444
Q ss_pred --CCCCCcEEEEEeCCCCceEEEEe-----CCCChHHHHHHHHhhhhcC
Q 019378 134 --KLDSIPVVLVVDPITGQKMRSWC-----GMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 134 --~v~~~P~l~ii~p~tG~~l~~~~-----G~~~~~~~l~~L~~~l~~~ 175 (342)
++.++|+++|++| .|+++.... |..+.+.|+..|..+.+.+
T Consensus 99 ~~gv~g~Pt~v~l~~-dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~ 146 (173)
T 3ira_A 99 ILGRGGWPLNIIMTP-GKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIW 146 (173)
T ss_dssp HHSCCCSSEEEEECT-TSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHH
T ss_pred HcCCCCCcceeeECC-CCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHH
Confidence 8999999999998 688876532 1223455766666665543
No 14
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.31 E-value=1.2e-11 Score=101.10 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=90.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhHHHHHHhCCC---CCCcE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKL---DSIPV 140 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg~~~~~~y~v---~~~P~ 140 (342)
.+|++++..|+.++|++||+|+++||.+|+.+.. +|.++.+...++.+++++.++++. .+...++..|++ .++|+
T Consensus 16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt 94 (133)
T 3fk8_A 16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPA 94 (133)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSE
T ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccce
Confidence 5789999999999999999999999999999986 689989999998899999999843 345678999999 99999
Q ss_pred EEEEeCCCCceEEEEeC-------CCChHHHHHHHHhh
Q 019378 141 VLVVDPITGQKMRSWCG-------MVQPESLLEDLVPF 171 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G-------~~~~~~~l~~L~~~ 171 (342)
++++++ +|+++.+..| ..+.+++.+.|...
T Consensus 95 ~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 95 VVVVNS-DGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp EEEECT-TSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred EEEECC-CCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 999997 7999999888 56777766655543
No 15
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.26 E-value=3.5e-11 Score=99.02 Aligned_cols=106 Identities=14% Similarity=0.219 Sum_probs=88.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhHHHHHHhCCCCCCcEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg~~~~~~y~v~~~P~l 141 (342)
...++.++..+ .+|++||+|+++||..|..+...++.++.+.+.+. +++++.++++. .+...++..|++..+|++
T Consensus 19 ~~~~~~~l~~~--~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~ 95 (134)
T 2fwh_A 19 VDELNQALVEA--KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTI 95 (134)
T ss_dssp HHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred HHHHHHHHHHh--cCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCEE
Confidence 34566666554 38999999999999999999999999999988886 48899988866 566789999999999999
Q ss_pred EEEeCCCCceE--EEEeCCCChHHHHHHHHhhhh
Q 019378 142 LVVDPITGQKM--RSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 142 ~ii~p~tG~~l--~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+|+|+ +|+++ .++.|..++++|.+.|..+-.
T Consensus 96 ~~~d~-~G~~v~~~~~~G~~~~~~l~~~l~~~~~ 128 (134)
T 2fwh_A 96 LFFDG-QGQEHPQARVTGFMDAETFSAHLRDRQP 128 (134)
T ss_dssp EEECT-TSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred EEECC-CCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence 99996 78887 789999999999877765543
No 16
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.02 E-value=1.8e-09 Score=87.18 Aligned_cols=98 Identities=10% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 153 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~ 153 (342)
+...+|++||+|+++||..|+.+...+ ..+.+.+..++.++.++.+..+...++..|++..+|+++|+++ +|+++.
T Consensus 22 ~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~-~G~~~~ 97 (126)
T 2l57_A 22 EAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDK-EGNKFY 97 (126)
T ss_dssp TCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECT-TCCEEE
T ss_pred HHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECC-CCCEEE
Confidence 456789999999999999999997543 4455555567999998854555678899999999999999997 799999
Q ss_pred EEeCCCChHHHHHHHHhhhhcC
Q 019378 154 SWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 154 ~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
++.|..+.++|.+.|...+...
T Consensus 98 ~~~G~~~~~~l~~~l~~~~~~~ 119 (126)
T 2l57_A 98 VHQGLMRKNNIETILNSLGVKE 119 (126)
T ss_dssp EEESCCCHHHHHHHHHHHCCCC
T ss_pred EecCCCCHHHHHHHHHHHhccc
Confidence 9999999999988887776643
No 17
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=99.00 E-value=4e-09 Score=82.89 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=82.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|++++..+++.+|+++|+|+++||..|+.+...+ ..+.+.+..++.++.++.+. ...++..|++.++|++++
T Consensus 10 ~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 84 (112)
T 1ep7_A 10 KAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITAMPTFHV 84 (112)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--THHHHHHHTCCBSSEEEE
T ss_pred HHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCeEEEEEECCc--hHHHHHHcCCCcccEEEE
Confidence 4578899998888899999999999999999997543 34444455578888888865 456889999999999887
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
+. +|+.+.++.|. +++++.+.|...+
T Consensus 85 ~~--~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 85 YK--DGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EE--TTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EE--CCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 73 79999999998 8888887777665
No 18
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=98.96 E-value=7.9e-09 Score=81.79 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=81.6
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
-..+|++++ .+|+++|+|+++||..|+.+...+ .++.+.+..++.++.++.+.. ..++..|++..+|+++
T Consensus 7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~ 76 (112)
T 2voc_A 7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMGDKLKIVKIDVDEN--QETAGKYGVMSIPTLL 76 (112)
T ss_dssp CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHTTTCEEEEEETTTC--CSHHHHTTCCSBSEEE
T ss_pred cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCcEEEEEECCCC--HHHHHHcCCCcccEEE
Confidence 346777777 789999999999999999997554 456666666889998888653 3578899999999999
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
++ . +|+.+.++.|..+.++|.+.|...+..
T Consensus 77 ~~-~-~G~~~~~~~G~~~~~~l~~~l~~~~~~ 106 (112)
T 2voc_A 77 VL-K-DGEVVETSVGFKPKEALQELVNKHLLE 106 (112)
T ss_dssp EE-E-TTEEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred EE-e-CCEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 99 3 799999999999999988777666654
No 19
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=98.95 E-value=8e-09 Score=83.71 Aligned_cols=99 Identities=12% Similarity=0.247 Sum_probs=80.2
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
-..+|++++..|+..+|+++|+|+++||..|+.+... +.++.++ ++.++.++.+. ...+++.|++..+|+
T Consensus 23 ~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~------l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt 94 (124)
T 1xfl_A 23 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPF------FADLAKKLPNVLFLKVDTDE--LKSVASDWAIQAMPT 94 (124)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHH------HHHHHHHCSSEEEEEEETTT--SHHHHHHTTCCSSSE
T ss_pred CHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHH------HHHHHHHCCCcEEEEEECcc--CHHHHHHcCCCccCE
Confidence 3468999999999999999999999999999999643 3344333 68888888864 457889999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
++|+. +|+.+.++.| .+++.|.+.|..++
T Consensus 95 ~~~~~--~G~~~~~~~G-~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 95 FMFLK--EGKILDKVVG-AKKDELQSTIAKHL 123 (124)
T ss_dssp EEEEE--TTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred EEEEE--CCEEEEEEeC-CCHHHHHHHHHHhc
Confidence 88873 7999999999 58888877776553
No 20
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=98.94 E-value=6.4e-09 Score=83.12 Aligned_cols=99 Identities=25% Similarity=0.338 Sum_probs=77.7
Q ss_pred cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCC
Q 019378 60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDS 137 (342)
Q Consensus 60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~ 137 (342)
...-..+|++++..+ .+|++||+|+++||..|+.+.. .+.++.+. ++.+..+|++. ...++..|++..
T Consensus 15 ~~~t~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~ 84 (116)
T 3qfa_C 15 QIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKP------FFHSLSEKYSNVIFLEVDVDD--CQDVASECEVKS 84 (116)
T ss_dssp CCCCHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHH------HHHHHHTTCTTSEEEEEETTT--THHHHHHTTCCS
T ss_pred CCCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEECCC--CHHHHHHcCCcc
Confidence 334556777777554 7899999999999999999964 34444442 37888888764 457899999999
Q ss_pred CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
+|+++|+. +|+.+.++.|. +++.|.+.|...
T Consensus 85 ~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 85 MPTFQFFK--KGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp SSEEEEES--SSSEEEEEESC-CHHHHHHHHHHH
T ss_pred ccEEEEEe--CCeEEEEEcCC-CHHHHHHHHHHh
Confidence 99999983 79999999998 999888877654
No 21
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.94 E-value=6.2e-09 Score=80.99 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=78.4
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
-..+|++++ .++|+++|+|+++||..|+.+...+ ..+.+...+++.+..++.+. ...++..|++.++|+++
T Consensus 10 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~ 80 (109)
T 3tco_A 10 TEENFDEVI----RNNKLVLVDCWAEWCAPCHLYEPIY---KKVAEKYKGKAVFGRLNVDE--NQKIADKYSVLNIPTTL 80 (109)
T ss_dssp CTTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred cHHHHHHHH----hcCCeEEEEEECCCCHHHHhhhHHH---HHHHHHhCCCceEEEEcccc--CHHHHHhcCcccCCEEE
Confidence 355677666 3489999999999999999996432 33444445578888877764 45689999999999999
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
++. +|+.+.++.|..+.++|...|...+
T Consensus 81 ~~~--~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 81 IFV--NGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEE--TTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred EEc--CCcEEEeeeccCCHHHHHHHHHHHh
Confidence 993 7999999999999999988887664
No 22
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=98.93 E-value=8.6e-10 Score=89.37 Aligned_cols=96 Identities=4% Similarity=-0.041 Sum_probs=79.0
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC 156 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~ 156 (342)
.....||+|+.+||.+|+.|.+.|+....+....+ .+.+..+|++......++..|+|.+.|++++++ +|+.+.++.
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~--~G~ev~Ri~ 93 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELARPVTFTPTFVLMA--GDVESGRLE 93 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEE--TTEEEEEEE
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHCCCCCCCEEEEEE--CCEEEeeec
Confidence 34789999999999999999998888877654443 355566777765555677899999999999998 799999999
Q ss_pred CCCChHHHHHHHHhhhhcC
Q 019378 157 GMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 157 G~~~~~~~l~~L~~~l~~~ 175 (342)
|+++++.|+..|...+...
T Consensus 94 G~~~~~~f~~~L~~~l~~~ 112 (116)
T 3dml_A 94 GYPGEDFFWPMLARLIGQA 112 (116)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 9999999999999887754
No 23
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=98.92 E-value=1.1e-08 Score=80.94 Aligned_cols=92 Identities=21% Similarity=0.337 Sum_probs=71.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
.+|++++..+ .+|+++|+|+++||.+|+.+... +.++.+ .+++++.+|++. ...++..|+|.++|+++
T Consensus 9 ~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~------~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~V~~~PT~~ 78 (105)
T 3zzx_A 9 EDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAPK------LEELSQSMSDVVFLKVDVDE--CEDIAQDNQIACMPTFL 78 (105)
T ss_dssp HHHHHHHHHT--TTSEEEEEEECTTCHHHHHHHHH------HHHHHHHCTTEEEEEEETTT--CHHHHHHTTCCBSSEEE
T ss_pred HHHHHHHHhc--CCCEEEEEEECCCCCCccCCCcc------hhhhhhccCCeEEEEEeccc--CHHHHHHcCCCeecEEE
Confidence 4577777654 57999999999999999999643 333333 368888888764 56799999999999999
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~ 169 (342)
++. +|+.+.++.|. ++++|.+.|.
T Consensus 79 ~~~--~G~~v~~~~G~-~~~~l~~~i~ 102 (105)
T 3zzx_A 79 FMK--NGQKLDSLSGA-NYDKLLELVE 102 (105)
T ss_dssp EEE--TTEEEEEEESC-CHHHHHHHHH
T ss_pred EEE--CCEEEEEEeCc-CHHHHHHHHH
Confidence 985 79999999994 7877766554
No 24
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=98.91 E-value=1.3e-08 Score=78.83 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=79.9
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
+-..+|++++ .+|+++|+|+++||..|+.+...+ ..+.+.+.+++.+..++.+. ...++..|++..+|++
T Consensus 8 l~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~ 77 (106)
T 3die_A 8 VTDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVL---EELAADYEGKADILKLDVDE--NPSTAAKYEVMSIPTL 77 (106)
T ss_dssp CCTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSBSEE
T ss_pred CCHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCc--CHHHHHhCCCcccCEE
Confidence 3456777777 789999999999999999997544 55555666678888877764 4568899999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
+++. +|+.+.++.|..+.+++...|...
T Consensus 78 ~~~~--~G~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 78 IVFK--DGQPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp EEEE--TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred EEEe--CCeEEEEEeCCCCHHHHHHHHHHh
Confidence 9996 799999999999999988877654
No 25
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=98.90 E-value=1.8e-08 Score=80.57 Aligned_cols=105 Identities=12% Similarity=0.222 Sum_probs=82.2
Q ss_pred cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378 60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP 139 (342)
Q Consensus 60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P 139 (342)
.+.-..+|++++..|+..+|+++|+|+++||..|+.+... | .++.+-.. ++.+..++.+. ...++..|++..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~~P 89 (122)
T 2vlu_A 16 SVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPV-F--ADLAKKFP-NAVFLKVDVDE--LKPIAEQFSVEAMP 89 (122)
T ss_dssp EECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCSSS
T ss_pred eccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CcEEEEEECCC--CHHHHHHcCCCccc
Confidence 3345678999999999999999999999999999999642 2 12333333 37888878765 45688999999999
Q ss_pred EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+++++. +|+.+.++.|.. ++.|...|...+.
T Consensus 90 t~~~~~--~G~~~~~~~G~~-~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 90 TFLFMK--EGDVKDRVVGAI-KEELTAKVGLHAA 120 (122)
T ss_dssp EEEEEE--TTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred EEEEEe--CCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence 988773 799999999988 8888887777654
No 26
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=98.90 E-value=2.1e-08 Score=78.47 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=76.0
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~ 155 (342)
..+|+++|+|+++||..|+.+...+ +.+.+...+++.+..++.+. ...++..|++..+|+++++. +|+.+.++
T Consensus 20 ~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~g~~~~~~ 92 (111)
T 3gnj_A 20 DEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEE--EKTLFQRFSLKGVPQILYFK--DGEYKGKM 92 (111)
T ss_dssp TSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCSSCEEEEEE--TTEEEEEE
T ss_pred hcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCc--ChhHHHhcCCCcCCEEEEEE--CCEEEEEE
Confidence 6789999999999999999997543 45555555678888888865 44688999999999999994 69999999
Q ss_pred eCCCChHHHHHHHHhhhh
Q 019378 156 CGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 156 ~G~~~~~~~l~~L~~~l~ 173 (342)
.|..+.+.|...|...+.
T Consensus 93 ~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 93 AGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp ESSCCHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHHHhc
Confidence 999999999988887764
No 27
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=98.89 E-value=7.4e-09 Score=80.36 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=74.4
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
.+.+.+|+++|+|+++||..|+.+...+ .++.+...+++.+..++.+. ...++..|++.++|+++++. +|+.+
T Consensus 12 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~~ 84 (105)
T 1nsw_A 12 QAIQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHADKVTVAKLNVDE--NPETTSQFGIMSIPTLILFK--GGRPV 84 (105)
T ss_dssp HHHSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHSTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEE
T ss_pred HHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECcC--CHHHHHHcCCccccEEEEEe--CCeEE
Confidence 4446789999999999999999997543 44555555668888888765 45688999999999999993 79999
Q ss_pred EEEeCCCChHHHHHHHHhhh
Q 019378 153 RSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 153 ~~~~G~~~~~~~l~~L~~~l 172 (342)
.++.|..+++.|...|...+
T Consensus 85 ~~~~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 85 KQLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp EEEESCCCHHHHHHHTTTTT
T ss_pred EEEecCCCHHHHHHHHHHHh
Confidence 99999999988877665543
No 28
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=98.89 E-value=1.6e-08 Score=80.01 Aligned_cols=101 Identities=17% Similarity=0.306 Sum_probs=82.4
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
-..+|++++..|+..+|+++|+|+++||..|+.+.. .+.++.+. ++.+..++.+. ...++..|++..+|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt 84 (118)
T 2vm1_A 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAP------VFAEYAKKFPGAIFLKVDVDE--LKDVAEAYNVEAMPT 84 (118)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSBSE
T ss_pred CHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHCCCcEEEEEEccc--CHHHHHHcCCCcCcE
Confidence 457899999999999999999999999999999964 34444443 68888877764 456889999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
++++. +|+.+.++.| .+++.+...|..++..
T Consensus 85 ~~~~~--~g~~~~~~~g-~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 85 FLFIK--DGEKVDSVVG-GRKDDIHTKIVALMGS 115 (118)
T ss_dssp EEEEE--TTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred EEEEe--CCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence 98884 7999999999 5888888888877753
No 29
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=98.88 E-value=1.6e-08 Score=83.02 Aligned_cols=101 Identities=14% Similarity=0.224 Sum_probs=83.2
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
-..+|++++..|...+|+++|+|+++||..|+.+... +.++.+ .++.++.++++. ...++..|++..+|+
T Consensus 31 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~------l~~l~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt 102 (139)
T 3d22_A 31 TKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPY------YIELSENYPSLMFLVIDVDE--LSDFSASWEIKATPT 102 (139)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCEESE
T ss_pred CHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHH------HHHHHHHCCCCEEEEEeCcc--cHHHHHHcCCCcccE
Confidence 3578999999999999999999999999999999643 333333 368888888765 456889999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
++|+. +|+++.++.|. ++++|...|...+..
T Consensus 103 ~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 103 FFFLR--DGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp EEEEE--TTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred EEEEc--CCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 98883 79999999998 888888888877764
No 30
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=98.87 E-value=2.2e-08 Score=77.69 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=78.3
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|++++ +.+|+++|+|+++||..|+.+...+ ..+.+.+..++.++.++.+. ...+++.|++..+|++++
T Consensus 8 ~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~ 78 (109)
T 2yzu_A 8 DQNFDETL----GQHPLVLVDFWAEWCAPCRMIAPIL---EEIAKEYEGKLLVAKLDVDE--NPKTAMRYRVMSIPTVIL 78 (109)
T ss_dssp TTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred HhHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHH---HHHHHHhhCceEEEEEECCC--CHhHHHhCCCCcCCEEEE
Confidence 34566443 5689999999999999999997543 45555556678999888865 346889999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+. +|+.+.++.|..+.+.|...|...+.
T Consensus 79 ~~--~g~~~~~~~g~~~~~~l~~~l~~~l~ 106 (109)
T 2yzu_A 79 FK--DGQPVEVLVGAQPKRNYQAKIEKHLP 106 (109)
T ss_dssp EE--TTEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred Ee--CCcEeeeEeCCCCHHHHHHHHHHHhh
Confidence 93 79999999999999998887776654
No 31
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=98.87 E-value=2e-08 Score=78.99 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=80.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|.+.+ ...+|+++|+|+++||..|+.+...+ +.+.+.+..++.++.++.+. ...++..|++..+|++++
T Consensus 14 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~ 85 (115)
T 1thx_A 14 DAEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPALRL 85 (115)
T ss_dssp GGGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCSSSEEEE
T ss_pred ccchhhHh---hcCCceEEEEEECCCCHHHHHhHHHH---HHHHHHhCCcEEEEEEEcCC--CHHHHHHcCCCceeEEEE
Confidence 44565554 36789999999999999999997543 45555566678888888865 346889999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+ + +|+.+.++.|..+.+.|...|...+.
T Consensus 86 ~-~-~G~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 86 V-K-GEQILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp E-E-TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred E-c-CCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 9 3 79999999999999999888887765
No 32
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=98.87 E-value=2.3e-08 Score=77.57 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=78.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|.+++ ...+|+++|+|+++||..|+.+...+ .++.+.+..++.++.++.+.. ..++..|++..+|++++
T Consensus 9 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~ 80 (107)
T 2i4a_A 9 DSSFDQDV---LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFAGKVTVAKVNIDDN--PETPNAYQVRSIPTLML 80 (107)
T ss_dssp TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTSEEEEEEETTTC--CHHHHHTTCCSSSEEEE
T ss_pred hhhhhHHH---HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhCCcEEEEEEECCCC--HHHHHhcCCCccCEEEE
Confidence 34565554 36789999999999999999997654 456666666899999888653 36888999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
+ + +|+.+.++.|..+.+.+...|...
T Consensus 81 ~-~-~G~~~~~~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 81 V-R-DGKVIDKKVGALPKSQLKAWVESA 106 (107)
T ss_dssp E-E-TTEEEEEEESCCCHHHHHHHHHHT
T ss_pred E-e-CCEEEEEecCCCCHHHHHHHHHhc
Confidence 9 3 799999999999999888777653
No 33
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.86 E-value=1.6e-08 Score=81.74 Aligned_cols=114 Identities=13% Similarity=0.191 Sum_probs=86.6
Q ss_pred HhhCCCCcC--cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHH
Q 019378 53 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC 130 (342)
Q Consensus 53 ~~f~pp~~~--~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~ 130 (342)
.+|.++..+ +-..+|++.+. +.+|++||+|+++||..|+.+...+ +.+.+.+.+++.+..+|.+. ...++
T Consensus 11 ~l~~~~~~v~~l~~~~f~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~ 82 (130)
T 2dml_A 11 GLYSSSDDVIELTPSNFNREVI---QSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADK--HQSLG 82 (130)
T ss_dssp CSSCTTSSSEECCTTTHHHHTT---TCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTT--CHHHH
T ss_pred cccCCCCCcEECCHHHHHHHHh---cCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCC--CHHHH
Confidence 345444333 33456666543 5689999999999999999997554 45555566678888888765 45688
Q ss_pred HhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 131 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 131 ~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
..|++..+|+++++++ .|.++..+.|..+.+.|++.|...+..+
T Consensus 83 ~~~~v~~~Pt~~~~~~-~~~~~~~~~G~~~~~~l~~~l~~~l~~~ 126 (130)
T 2dml_A 83 GQYGVQGFPTIKIFGA-NKNKPEDYQGGRTGEAIVDAALSALRSG 126 (130)
T ss_dssp HHHTCCSSSEEEEESS-CTTSCEECCSCCSHHHHHHHHHHHHHHS
T ss_pred HHcCCCccCEEEEEeC-CCCeEEEeecCCCHHHHHHHHHHHHhcC
Confidence 9999999999999986 4555788899999999999998888754
No 34
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=98.86 E-value=1.6e-08 Score=79.38 Aligned_cols=99 Identities=13% Similarity=0.210 Sum_probs=80.3
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
-..+|++++..|+..+|+++|+|+++||..|+.+... +.++.+. ++.++.++.+. ...++..|++..+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~------l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt 82 (113)
T 1ti3_A 11 TVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPI------FAELAKKFPNVTFLKVDVDE--LKAVAEEWNVEAMPT 82 (113)
T ss_dssp SHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHH------HHHHHHHCSSEEEEEEETTT--CHHHHHHHHCSSTTE
T ss_pred cHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHH------HHHHHHhCCCcEEEEEEccc--cHHHHHhCCCCcccE
Confidence 3467899999998899999999999999999999643 3344433 68888888764 456888999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
++++. +|+.+.++.| .+++.|...|..++
T Consensus 83 ~~~~~--~G~~~~~~~g-~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 83 FIFLK--DGKLVDKTVG-ADKDGLPTLVAKHA 111 (113)
T ss_dssp EEEEE--TTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred EEEEe--CCEEEEEEec-CCHHHHHHHHHHhh
Confidence 99884 7999999999 68888888777665
No 35
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=98.86 E-value=2.1e-08 Score=78.12 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=78.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|.+.+ .+.+|+++|+|+++||..|+.+...+ ..+.+....++.+..++.+.. ..++..|++..+|++++
T Consensus 9 ~~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~ 80 (108)
T 2trx_A 9 DDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLL 80 (108)
T ss_dssp TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTC--TTHHHHTTCCSSSEEEE
T ss_pred hhhHHHHH---HhcCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhCCCcEEEEEECCCC--HHHHHHcCCcccCEEEE
Confidence 34555444 46789999999999999999996543 345555556799998888653 35788999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
+. +|+.+.++.|..+++.|...|...+
T Consensus 81 ~~--~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 81 FK--NGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred Ee--CCEEEEEEecCCCHHHHHHHHHHhh
Confidence 93 7999999999999999888777654
No 36
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=98.85 E-value=2.2e-08 Score=80.19 Aligned_cols=92 Identities=14% Similarity=0.228 Sum_probs=74.0
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 153 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~ 153 (342)
..+.+|++||+|+++||..|+.+...+ ..+.+-+..++.++.++.+. ...+++.|++..+|+++++ + +|+++.
T Consensus 27 v~~~~k~vlv~f~a~~C~~C~~~~~~l---~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~-~-~G~~~~ 99 (119)
T 1w4v_A 27 VVNSETPVVVDFHAQWCGPCKILGPRL---EKMVAKQHGKVVMAKVDIDD--HTDLAIEYEVSAVPTVLAM-K-NGDVVD 99 (119)
T ss_dssp TTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEETTT--THHHHHHTTCCSSSEEEEE-E-TTEEEE
T ss_pred HHcCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCC--CHHHHHHcCCCcccEEEEE-e-CCcEEE
Confidence 345789999999999999999997543 33444445578888888865 3468899999999999999 3 799999
Q ss_pred EEeCCCChHHHHHHHHhhh
Q 019378 154 SWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 154 ~~~G~~~~~~~l~~L~~~l 172 (342)
++.|..+.+.|...|...+
T Consensus 100 ~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 100 KFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHh
Confidence 9999999999888777654
No 37
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=98.85 E-value=2e-08 Score=82.46 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=74.7
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC 156 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~ 156 (342)
.+|++||+|+++||..|+.+...+ ..+.+.+..++.++.++++. ...++..|++..+|+++++++ .|+++ ...
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~-~g~~~-~~~ 122 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDK--EPELARDFGIQSIPTIWFVPM-KGEPQ-VNM 122 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEECS-SSCCE-EEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHHcCCCCcCEEEEEeC-CCCEE-EEe
Confidence 589999999999999999997544 55656666678888888865 456899999999999999986 67766 788
Q ss_pred CCCChHHHHHHHHhhhh
Q 019378 157 GMVQPESLLEDLVPFMD 173 (342)
Q Consensus 157 G~~~~~~~l~~L~~~l~ 173 (342)
|..+.+.|...|...+.
T Consensus 123 G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 123 GALSKEQLKGYIDKVLL 139 (141)
T ss_dssp SCCCHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 99999999888877764
No 38
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=98.85 E-value=3.4e-08 Score=82.04 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=83.6
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
+-..+|++++ ..+|++||+|+++||..|+.+...+ .++.+.+..++.+..++.+. ...++..|++.++|++
T Consensus 43 l~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~ 113 (148)
T 3p2a_A 43 ATAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERAGKVRFVKVNTEA--EPALSTRFRIRSIPTI 113 (148)
T ss_dssp CCTTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred cCHHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcCCceEEEEEECcC--CHHHHHHCCCCccCEE
Confidence 3456677666 7899999999999999999996433 34445555678888888765 4468899999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+++. +|+.+.++.|..+.+.|...|...+...
T Consensus 114 ~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 145 (148)
T 3p2a_A 114 MLYR--NGKMIDMLNGAVPKAPFDNWLDEQLSRD 145 (148)
T ss_dssp EEEE--TTEEEEEESSCCCHHHHHHHHHHHHHSC
T ss_pred EEEE--CCeEEEEEeCCCCHHHHHHHHHHHhccc
Confidence 9995 7999999999999999999998888753
No 39
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=98.84 E-value=1.4e-08 Score=83.35 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=76.5
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~ 155 (342)
+.+|++||+|+++||..|+.+...+ ..+.+.+..++.+..++.+. ...++..|++..+|+++++++ +|+.+ .+
T Consensus 36 ~~~k~~lv~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~-~G~~~-~~ 108 (136)
T 2l5l_A 36 EGDKPAIVDFYADWCGPCKMVAPIL---DELAKEYDGQIVIYKVDTEK--EQELAGAFGIRSIPSILFIPM-EGKPE-MA 108 (136)
T ss_dssp CCSSCEEEEEECTTSHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSCEEEEECS-SSCCE-EE
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCEEEEEEeCCC--CHHHHHHcCCCCCCEEEEECC-CCcEE-EE
Confidence 3579999999999999999997543 34555555678888888865 346889999999999999986 68877 67
Q ss_pred eCCCChHHHHHHHHhhhhcCC
Q 019378 156 CGMVQPESLLEDLVPFMDGGP 176 (342)
Q Consensus 156 ~G~~~~~~~l~~L~~~l~~~~ 176 (342)
.|..+.+.|...|...+....
T Consensus 109 ~G~~~~~~l~~~l~~~~~~~~ 129 (136)
T 2l5l_A 109 QGAMPKASFKKAIDEFLLKKE 129 (136)
T ss_dssp ESCCCHHHHHHHHHHHHTSCT
T ss_pred eCCCCHHHHHHHHHHHhhccC
Confidence 899999999988888877543
No 40
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=98.84 E-value=2.8e-08 Score=77.27 Aligned_cols=92 Identities=14% Similarity=0.254 Sum_probs=74.0
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 153 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~ 153 (342)
....+|+++|+|+++||..|+.+...+ ..+.+-+..++.+..++.+. ...++..|++.++|+++++. +|+.+.
T Consensus 15 ~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~~~ 87 (107)
T 1dby_A 15 VLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRSIPTIMVFK--GGKKCE 87 (107)
T ss_dssp TTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCSSCEEEEES--SSSEEE
T ss_pred HhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhCCceEEEEEECCC--CHHHHHHCCCCcCCEEEEEe--CCEEEE
Confidence 345789999999999999999997543 44555555678888888765 34688899999999988873 799999
Q ss_pred EEeCCCChHHHHHHHHhhh
Q 019378 154 SWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 154 ~~~G~~~~~~~l~~L~~~l 172 (342)
++.|..+.+++.+.|..++
T Consensus 88 ~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 88 TIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEESCCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 9999999998888777654
No 41
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=98.82 E-value=5.3e-08 Score=74.68 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=76.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|++++ ..+|+++|+|+++||..|+.+...+ ..+.+.+.+ +.+..++.+. ...++..|++.++|++++
T Consensus 6 ~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~-~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~ 75 (104)
T 2e0q_A 6 SKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPII---EELAEDYPQ-VGFGKLNSDE--NPDIAARYGVMSLPTVIF 75 (104)
T ss_dssp TTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCSSCEEEE
T ss_pred HHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHH---HHHHHHcCC-ceEEEEECCC--CHHHHHhCCccccCEEEE
Confidence 45677776 4689999999999999999996432 223333333 7788777764 356889999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+. +|+.+.++.|..+.+.+...|...+.
T Consensus 76 ~~--~g~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 76 FK--DGEPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp EE--TTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred EE--CCeEhhhccCCCCHHHHHHHHHHHhc
Confidence 93 79999999999999999888877664
No 42
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=98.82 E-value=1.8e-08 Score=78.71 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=64.6
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 153 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~ 153 (342)
+++|+++|+|+++||.+|+.+.. .+.++.+. ++.+..+|++.. ..++..|++.++|+++++. +|+.+.
T Consensus 16 ~~~~~vlv~f~a~wC~~C~~~~p------~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~G~~~~ 85 (105)
T 4euy_A 16 EEQQLVLLFIKTENCGVCDVMLR------KVNYVLENYNYVEKIEILLQDM--QEIAGRYAVFTGPTVLLFY--NGKEIL 85 (105)
T ss_dssp TCSSEEEEEEEESSCHHHHHHHH------HHHHHHHTCTTEEEEEEEECCC-----------CCCCEEEEEE--TTEEEE
T ss_pred hcCCCEEEEEeCCCCcchHHHHH------HHHHHHHHcCCceEEEEECCCC--HHHHHhcCCCCCCEEEEEe--CCeEEE
Confidence 57899999999999999999863 34444443 688888888653 3688999999999999996 799999
Q ss_pred EEeCCCChHHHHHHHHhhh
Q 019378 154 SWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 154 ~~~G~~~~~~~l~~L~~~l 172 (342)
++.|..+.++|.+.|..++
T Consensus 86 ~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 86 RESRFISLENLERTIQLFE 104 (105)
T ss_dssp EEESSCCHHHHHHHHHTTC
T ss_pred EEeCCcCHHHHHHHHHHhh
Confidence 9999999999988887654
No 43
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=98.82 E-value=5e-09 Score=89.40 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=85.4
Q ss_pred HHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHH
Q 019378 49 DNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKK 128 (342)
Q Consensus 49 ~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~ 128 (342)
+.....|++... + .++++++..+..++|++||+|+.+||.+|..+.. +|..-....-.+-.|+...++.+...
T Consensus 20 ~~~~~~~~~~i~--w-~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p-~l~~~~~~~~~~~~~~~v~~d~~~~~--- 92 (164)
T 1sen_A 20 NGLGKGFGDHIH--W-RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKP-KFAESTEISELSHNFVMVNLEDEEEP--- 92 (164)
T ss_dssp --CCTTSCTTSC--B-CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHHTCHHHHHHHTTSEEEEEEGGGSC---
T ss_pred cccccccccccc--c-cCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHH-HHHHHHHHhhcCCeEEEEEecCCchH---
Confidence 344455555443 3 7899999999999999999999999999999976 34332111112346776655543321
Q ss_pred HHHhCCC--CCCcEEEEEeCCCCceEEEEeCC----------CChHHHHHHHHhhhhcC
Q 019378 129 VCTYYKL--DSIPVVLVVDPITGQKMRSWCGM----------VQPESLLEDLVPFMDGG 175 (342)
Q Consensus 129 ~~~~y~v--~~~P~l~ii~p~tG~~l~~~~G~----------~~~~~~l~~L~~~l~~~ 175 (342)
++..|.+ ..+|+++|+|+ +|+++.++.|. .++++|+..|...++..
T Consensus 93 ~~~~~~~~~~~~Pt~~~~d~-~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 150 (164)
T 1sen_A 93 KDEDFSPDGGYIPRILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 150 (164)
T ss_dssp SCGGGCTTCSCSSEEEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCcCCeEEEECC-CCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence 4566777 66999999996 78888888884 78999999999888753
No 44
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=98.82 E-value=1.7e-08 Score=81.86 Aligned_cols=117 Identities=6% Similarity=0.134 Sum_probs=79.3
Q ss_pred chhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh
Q 019378 45 DSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS 124 (342)
Q Consensus 45 ~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~ 124 (342)
+++...+..+|.+- +.+- ..-.+.+..+..++|++||+|+++||..|+.+...+ +.+.+.+..++.+..++.+.
T Consensus 11 ~~f~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~- 84 (128)
T 3ul3_B 11 NRFDKYYLRMFKKV-PRLQ-QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDK- 84 (128)
T ss_dssp ----------------CCC-CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGG-
T ss_pred HHHHHHHHHHhccC-Cccc-cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCC-
Confidence 44455566666542 2222 122233555667899999999999999999997554 45666666789999888765
Q ss_pred hHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 125 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 125 eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
...++..|++.++|+++++. .|+.+.++.|..+.++|.+.|.+
T Consensus 85 -~~~l~~~~~v~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~ 127 (128)
T 3ul3_B 85 -NESLARKFSVKSLPTIILLK--NKTMLARKDHFVSSNDLIALIKK 127 (128)
T ss_dssp -CHHHHHHTTCCSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHTT
T ss_pred -CHHHHHHcCCCCcCEEEEEE--CCEEEEEecCCCCHHHHHHHHHh
Confidence 34788999999999999994 69999999999999998876653
No 45
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=98.81 E-value=3.8e-08 Score=76.12 Aligned_cols=96 Identities=27% Similarity=0.361 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+|++++..+ .+|+++|+|+++||..|+.+...+ ..+.+... ++.+..++.+. ...++..|++.++|+++++
T Consensus 9 ~~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~ 80 (105)
T 3m9j_A 9 TAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS-NVIFLEVDVDD--CQDVASESEVKSMPTFQFF 80 (105)
T ss_dssp HHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TSEEEEEETTT--CHHHHHHTTCCBSSEEEEE
T ss_pred HHHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc-CeEEEEEEhhh--hHHHHHHcCCCcCcEEEEE
Confidence 4556665433 689999999999999999996432 22333222 47888877764 4578899999999999999
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 145 DPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
. .|+.+.++.|. +++.+.+.|...
T Consensus 81 ~--~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 81 K--KGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp E--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred E--CCeEEEEEeCC-CHHHHHHHHHHh
Confidence 5 68999999998 998888777654
No 46
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=98.80 E-value=7.8e-08 Score=74.34 Aligned_cols=97 Identities=14% Similarity=0.267 Sum_probs=74.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+|++++.. ..+|+++|+|+++||..|+.+...+ .++.+.+..++.++.++.+. ...++..|++..+|+++++
T Consensus 9 ~~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~ 81 (106)
T 1xwb_A 9 ADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKL---VELSTQFADNVVVLKVDVDE--CEDIAMEYNISSMPTFVFL 81 (106)
T ss_dssp HHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHH---HHHHHHhCCCeEEEEEeccc--hHHHHHHcCCCcccEEEEE
Confidence 456666643 4789999999999999999997542 23444555678999888865 4568899999999998887
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 145 DPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
. +|+.+.++.| .+++.+.+.|...
T Consensus 82 ~--~G~~~~~~~g-~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 82 K--NGVKVEEFAG-ANAKRLEDVIKAN 105 (106)
T ss_dssp E--TTEEEEEEES-CCHHHHHHHHHHT
T ss_pred c--CCcEEEEEcC-CCHHHHHHHHHHh
Confidence 4 6999999999 6888877766543
No 47
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=98.80 E-value=4.5e-08 Score=77.17 Aligned_cols=89 Identities=18% Similarity=0.281 Sum_probs=68.8
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCC
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 148 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~t 148 (342)
+..+.+++|+++|+|+++||..|+.+... +.++.+ .++.+..++++. ...++..|++..+|++++++ +
T Consensus 17 f~~~~~~~k~vlv~f~a~wC~~C~~~~p~------l~~l~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~ 86 (109)
T 3f3q_A 17 FDSAIAQDKLVVVDFYATWCGPCKMIAPM------IEKFSEQYPQADFYKLDVDE--LGDVAQKNEVSAMPTLLLFK--N 86 (109)
T ss_dssp HHHHTTSSSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--T
T ss_pred HHHHHhcCCEEEEEEECCcCHhHHHHHHH------HHHHHHHCCCCEEEEEECCC--CHHHHHHcCCCccCEEEEEE--C
Confidence 34455679999999999999999999743 334333 246777777754 45688999999999999997 6
Q ss_pred CceEEEEeCCCChHHHHHHHHh
Q 019378 149 GQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 149 G~~l~~~~G~~~~~~~l~~L~~ 170 (342)
|+.+.++.|. +++.|.+.|..
T Consensus 87 G~~~~~~~G~-~~~~l~~~i~~ 107 (109)
T 3f3q_A 87 GKEVAKVVGA-NPAAIKQAIAA 107 (109)
T ss_dssp TEEEEEEESS-CHHHHHHHHHH
T ss_pred CEEEEEEeCC-CHHHHHHHHHh
Confidence 9999999998 77777666654
No 48
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.79 E-value=2.4e-08 Score=81.41 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=79.2
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
-..+|++.+ .+.+|++||+|+++||..|+.+...+ ..+.+.+..++.++.++.+.. ..++..|++..+|+++
T Consensus 28 ~~~~f~~~~---~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~ 99 (128)
T 2o8v_B 28 TDDSFDTDV---LKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLL 99 (128)
T ss_dssp CTTTHHHHT---TTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTTTTEEEEEEETTTC--CTTSGGGTCCSSSEEE
T ss_pred ChhhHHHHH---HhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCccCEEE
Confidence 345666544 46789999999999999999996543 345555556799998888653 3578899999999999
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
++ + +|+.+.++.|..+.++|...|...+
T Consensus 100 ~~-~-~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 100 LF-K-NGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp EE-E-TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EE-e-CCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 99 3 7999999999999999888877654
No 49
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=98.78 E-value=3.6e-08 Score=77.44 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=73.9
Q ss_pred HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378 75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 154 (342)
Q Consensus 75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~ 154 (342)
.+.+|+++|+|+++||..|+.+...+ .++.+.+..++.++.++.+. ...++..|++..+|+++++. +|+.+.+
T Consensus 20 ~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~~~~ 92 (112)
T 1t00_A 20 LKNDKPVLVDFWAAWCGPCRQIAPSL---EAIAAEYGDKIEIVKLNIDE--NPGTAAKYGVMSIPTLNVYQ--GGEVAKT 92 (112)
T ss_dssp TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEEEE
T ss_pred hhCCCeEEEEEECCCCHhHHhcCHHH---HHHHHHhcCCeEEEEEEcCC--CHHHHHhCCCCcccEEEEEe--CCEEEEE
Confidence 35689999999999999999996543 34444455578888888765 34688999999999988874 7999999
Q ss_pred EeCCCChHHHHHHHHhhhh
Q 019378 155 WCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 155 ~~G~~~~~~~l~~L~~~l~ 173 (342)
+.|..+.+.|...|...+.
T Consensus 93 ~~G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 93 IVGAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp EESCCCHHHHHHHTHHHHC
T ss_pred EeCCCCHHHHHHHHHHHhh
Confidence 9999999999887776653
No 50
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=98.77 E-value=4.3e-08 Score=75.73 Aligned_cols=97 Identities=16% Similarity=0.285 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+|++++. ..+|+++|+|+++||..|+.+...+ ..+.+-+..++.+..++.+. ...++..|++..+|+++++
T Consensus 8 ~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~ 79 (105)
T 1fb6_A 8 SSWKEFVL---ESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTDE--APGIATQYNIRSIPTVLFF 79 (105)
T ss_dssp TTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred hhHHHHHh---cCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhcCceEEEEEcCcc--hHHHHHhCCCCcccEEEEE
Confidence 45555443 4689999999999999999997543 45555566678888888764 3568899999999998887
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 145 DPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
. +|+.+.++.|..+.+.|...|...
T Consensus 80 ~--~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 80 K--NGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp E--TTEEEEEEEECCCHHHHHHHHHHH
T ss_pred e--CCeEEEEEecCCCHHHHHHHHHhh
Confidence 4 799999999999999888777654
No 51
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=98.77 E-value=9.8e-08 Score=75.26 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=73.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|++++ +.+|++||+|+++||..|+.+...+ ..+.+.. .++.++.++.+. ...++..|++..+|++++
T Consensus 16 ~~~f~~~~----~~~k~vlv~f~a~~C~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 85 (112)
T 1syr_A 16 QAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFY---EECSKTY-TKMVFIKVDVDE--VSEVTEKENITSMPTFKV 85 (112)
T ss_dssp HHHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTT--THHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHH----ccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHc-CCCEEEEEECCC--CHHHHHHcCCCcccEEEE
Confidence 45666666 3789999999999999999996543 2233322 258888888765 346889999999999887
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
+. +|+.+.++.|. +++.|...|...+
T Consensus 86 ~~--~G~~~~~~~G~-~~~~l~~~l~~~l 111 (112)
T 1syr_A 86 YK--NGSSVDTLLGA-NDSALKQLIEKYA 111 (112)
T ss_dssp EE--TTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred EE--CCcEEEEEeCC-CHHHHHHHHHHhh
Confidence 74 79999999998 8888877766543
No 52
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=98.76 E-value=6.2e-08 Score=81.78 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=76.2
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~ 155 (342)
+.+|++||+|+++||..|+.+...+ +++.+-+..++.+..+|.+.. ..++..|++.++|+++++. +|+.+.++
T Consensus 62 ~~~~~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~--~G~~~~~~ 134 (155)
T 2ppt_A 62 RDDLPLLVDFWAPWCGPCRQMAPQF---QAAAATLAGQVRLAKIDTQAH--PAVAGRHRIQGIPAFILFH--KGRELARA 134 (155)
T ss_dssp TCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTS--THHHHHTTCCSSSEEEEEE--TTEEEEEE
T ss_pred hCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHccCCEEEEEEeCCcc--HHHHHHcCCCcCCEEEEEe--CCeEEEEe
Confidence 7889999999999999999997543 355555666788888888653 4688999999999999984 79999999
Q ss_pred eCCCChHHHHHHHHhhhh
Q 019378 156 CGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 156 ~G~~~~~~~l~~L~~~l~ 173 (342)
.|..+.+.|...|...+.
T Consensus 135 ~G~~~~~~l~~~l~~~l~ 152 (155)
T 2ppt_A 135 AGARPASELVGFVRGKLG 152 (155)
T ss_dssp ESCCCHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 999999999888887765
No 53
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=98.76 E-value=4.2e-08 Score=80.98 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=81.0
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 150 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~ 150 (342)
.+.....+|++||+|+++||..|+.+...+ +.+.+.+..++.+..++.+. ...++..|++..+|+++|+. +|+
T Consensus 17 ~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~G~ 89 (140)
T 3hz4_A 17 SQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIAT--NPWTAEKYGVQGTPTFKFFC--HGR 89 (140)
T ss_dssp HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTT--CHHHHHHHTCCEESEEEEEE--TTE
T ss_pred HHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCc--CHhHHHHCCCCcCCEEEEEe--CCc
Confidence 335556799999999999999999997544 56666667778888888765 35688999999999999984 799
Q ss_pred eEEEEeCCCChHHHHHHHHhhhhc
Q 019378 151 KMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 151 ~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.+.++.|..+++.|...|...+..
T Consensus 90 ~~~~~~G~~~~~~l~~~l~~~l~~ 113 (140)
T 3hz4_A 90 PVWEQVGQIYPSILKNAVRDMLQH 113 (140)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999888864
No 54
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.76 E-value=2.6e-08 Score=79.22 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=73.9
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 153 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~ 153 (342)
+...+|++||+|+++||..|+.+...+ ..+.+.+..++.+..++.+. ...++..|++..+|+++++. +|+.+.
T Consensus 26 ~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~--~g~~~~ 98 (121)
T 2i1u_A 26 VLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERATDLTVAKLDVDT--NPETARNFQVVSIPTLILFK--DGQPVK 98 (121)
T ss_dssp TTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEEE
T ss_pred HHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHhcCCCcCCEEEEEE--CCEEEE
Confidence 345789999999999999999997543 45555555678888888865 34688999999999998885 799999
Q ss_pred EEeCCCChHHHHHHHHhhh
Q 019378 154 SWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 154 ~~~G~~~~~~~l~~L~~~l 172 (342)
++.|..+.+.|...|...+
T Consensus 99 ~~~G~~~~~~l~~~l~~~l 117 (121)
T 2i1u_A 99 RIVGAKGKAALLRELSDVV 117 (121)
T ss_dssp EEESCCCHHHHHHHTCSCC
T ss_pred EecCCCCHHHHHHHHHHHH
Confidence 9999999998877665544
No 55
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=5.7e-08 Score=78.56 Aligned_cols=101 Identities=11% Similarity=0.173 Sum_probs=81.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIP 139 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg~~~~~~y~v~~~P 139 (342)
..+|.+++ .+.+|++||+|+++||..|+.+...+ ..+.+.+. .++.+..+|.+. ...++..|++..+|
T Consensus 14 ~~~~~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~P 85 (133)
T 1x5d_A 14 DDSFDKNV---LDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATV--NQVLASRYGIRGFP 85 (133)
T ss_dssp TTHHHHHT---TTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTT--CCHHHHHHTCCSSS
T ss_pred HhhHHHHH---hcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCC--CHHHHHhCCCCeeC
Confidence 34555543 35689999999999999999997544 34555555 678898888765 34688899999999
Q ss_pred EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+++|+++ |+.+.++.|..+.+.|...|...+..
T Consensus 86 t~~~~~~--g~~~~~~~G~~~~~~l~~~l~~~~~~ 118 (133)
T 1x5d_A 86 TIKIFQK--GESPVDYDGGRTRSDIVSRALDLFSD 118 (133)
T ss_dssp EEEEEET--TEEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred eEEEEeC--CCceEEecCCCCHHHHHHHHHHHhhc
Confidence 9999996 88888999999999999999888875
No 56
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=98.76 E-value=5.9e-08 Score=78.84 Aligned_cols=96 Identities=14% Similarity=0.239 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+|++++ ..+|++||+|+++||..|+.+...+ ..+.+.. .++.++.++++. ...++..|++..+|+++|+
T Consensus 28 ~~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~-~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~i~ 97 (125)
T 1r26_A 28 EQFRNIM----SEDILTVAWFTAVWCGPCKTIERPM---EKIAYEF-PTVKFAKVDADN--NSEIVSKCRVLQLPTFIIA 97 (125)
T ss_dssp HHHHHHH----HSSSCEEEEEECTTCHHHHHTHHHH---HHHHHHC-TTSEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHH----ccCCEEEEEEECCcCHhHHHHHHHH---HHHHHHC-CCCEEEEEECCC--CHHHHHHcCCCcccEEEEE
Confidence 4566655 6899999999999999999996432 1222222 368888888864 4568899999999998887
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 145 DPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
. +|+.+.++.| .+++.|.+.|...+.
T Consensus 98 ~--~G~~~~~~~G-~~~~~l~~~l~~~l~ 123 (125)
T 1r26_A 98 R--SGKMLGHVIG-ANPGMLRQKLRDIIK 123 (125)
T ss_dssp E--TTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred e--CCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence 3 7999999999 688888888877765
No 57
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=98.76 E-value=6.1e-08 Score=77.64 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=77.0
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
..|+..+..+...+.+|++||+|+++||..|+.+...+ ..+.+.+ .++.+..++.+.. ..++..|++..+|+++
T Consensus 8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~ 81 (118)
T 2f51_A 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN-KDVTFIKVDVDKN--GNAADAYGVSSIPALF 81 (118)
T ss_dssp ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTC--HHHHHHTTCCSSSEEE
T ss_pred ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC-CCeEEEEEECCCC--HHHHHhcCCCCCCEEE
Confidence 45677776666677899999999999999999997543 3444444 6788888888653 5688999999999999
Q ss_pred EEeCC--CCceEEEEeCCCChHHHHHHHHhhh
Q 019378 143 VVDPI--TGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 143 ii~p~--tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
+++.. .|+.+.++.|..+ +++...+..+.
T Consensus 82 ~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~~ 112 (118)
T 2f51_A 82 FVKKEGNEIKTLDQFVGADV-SRIKADIEKFK 112 (118)
T ss_dssp EEEEETTEEEEEEEEESCCH-HHHHHHHHHHC
T ss_pred EEeCCCCcceEEEeecCCCH-HHHHHHHHHhh
Confidence 99731 2788999999764 44555554443
No 58
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=98.75 E-value=6e-08 Score=76.24 Aligned_cols=100 Identities=15% Similarity=0.338 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
.+|++++.. +..+|+++|+|+++||..|+.+...+ ..+.+-+ ..++.+..++.+. ...++..|++.++|++++
T Consensus 9 ~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 82 (112)
T 3d6i_A 9 EQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQVF---EAISNEPSNSNVSFLSIDADE--NSEISELFEISAVPYFII 82 (112)
T ss_dssp HHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHHHH---HHHHHCGGGTTSEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHH---HHHHHhcCCCCEEEEEEeccc--CHHHHHHcCCCcccEEEE
Confidence 456666654 45689999999999999999996432 2222222 2368888888865 346889999999999998
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+. .|+.+.++.|. .+++|.+.|...+.
T Consensus 83 ~~--~G~~~~~~~G~-~~~~l~~~l~~~~~ 109 (112)
T 3d6i_A 83 IH--KGTILKELSGA-DPKEYVSLLEDCKN 109 (112)
T ss_dssp EE--TTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred EE--CCEEEEEecCC-CHHHHHHHHHHHHh
Confidence 84 79999999997 55567776666553
No 59
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=98.72 E-value=1.5e-07 Score=74.91 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCC
Q 019378 68 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 147 (342)
Q Consensus 68 ~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~ 147 (342)
.+.+..+.+.+|+++|+|+++||..|+.+...+ ..+.+-.. ++.+..++++. ...+++.|++..+|+++|+.
T Consensus 20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~-~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~-- 91 (114)
T 2oe3_A 20 LTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHL---TKLIQAYP-DVRFVKCDVDE--SPDIAKECEVTAMPTFVLGK-- 91 (114)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHH---HHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCSBSEEEEEE--
T ss_pred HHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHCC-CCEEEEEECCC--CHHHHHHCCCCcccEEEEEe--
Confidence 344555666899999999999999999986432 22322222 37788877764 34688999999999998773
Q ss_pred CCceEEEEeCCCChHHHHHHHH
Q 019378 148 TGQKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 148 tG~~l~~~~G~~~~~~~l~~L~ 169 (342)
+|+.+.++.|.. ++.|.+.|.
T Consensus 92 ~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 92 DGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp TTEEEEEEESSC-HHHHHHHHH
T ss_pred CCeEEEEEeCCC-HHHHHHHHH
Confidence 799999999987 777766554
No 60
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=98.71 E-value=7.4e-08 Score=77.34 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=70.7
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
+...+|+++|+|+++||..|..+...+ ..+.+.+.. ++.++.++.+. ...++..|++..+|+++++. +|+.+
T Consensus 29 ~l~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~~~--~G~~~ 101 (121)
T 2j23_A 29 VTGGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVDE--QSQIAQEVGIRAMPTFVFFK--NGQKI 101 (121)
T ss_dssp HHSSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETTT--CHHHHHHHTCCSSSEEEEEE--TTEEE
T ss_pred HHcCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECcC--CHHHHHHcCCCcccEEEEEE--CCeEE
Confidence 337899999999999999999997543 233333333 38888888865 34688999999999999885 79999
Q ss_pred EEEeCCCChHHHHHHHHhhh
Q 019378 153 RSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 153 ~~~~G~~~~~~~l~~L~~~l 172 (342)
.++.|. ++++|...|...+
T Consensus 102 ~~~~G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 102 DTVVGA-DPSKLQAAITQHS 120 (121)
T ss_dssp EEEESS-CHHHHHHHHHHHT
T ss_pred eeEcCC-CHHHHHHHHHHhh
Confidence 999998 8888877776554
No 61
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.71 E-value=2.1e-07 Score=72.45 Aligned_cols=94 Identities=13% Similarity=0.213 Sum_probs=76.4
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCChhHHHHHHhCCC
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCTYYKL 135 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s~eg~~~~~~y~v 135 (342)
+-..+|++++. ++++||+|+++||..|+.+. +.+.++.+. ++.+..+|.+. ...++..|++
T Consensus 10 l~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v 76 (111)
T 3uvt_A 10 LTENNFDDTIA-----EGITFIKFYAPWCGHCKTLA------PTWEELSKKEFPGLAGVKIAEVDCTA--ERNICSKYSV 76 (111)
T ss_dssp CCTTTHHHHHH-----SSEEEEEEECSSCHHHHHHH------HHHHHHHTCCCCC-CCEEEEEEETTT--CHHHHHHTTC
T ss_pred cChhhHHHHhc-----CCcEEEEEECCCChhHHHhh------HHHHHHHHHhhccCCceEEEEEeccc--cHhHHHhcCC
Confidence 44567888776 78999999999999999985 455666553 57888887764 4568999999
Q ss_pred CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
..+|+++++. +|+.+.++.|..+.+.|...|..
T Consensus 77 ~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 77 RGYPTLLLFR--GGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp CSSSEEEEEE--TTEEEEEECSCCSHHHHHHHHHH
T ss_pred CcccEEEEEe--CCcEEEeccCCcCHHHHHHHHHh
Confidence 9999999884 68999999999999998877654
No 62
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.71 E-value=1e-07 Score=78.01 Aligned_cols=100 Identities=11% Similarity=0.226 Sum_probs=78.5
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecCChhHHHHHHhCCCCCCc
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIP 139 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~s~eg~~~~~~y~v~~~P 139 (342)
-..+|++++ ..+|++||+|+++||..|+.+...+ ..+.+.+.+. +++..+|.+. ...++..|++..+|
T Consensus 23 ~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P 93 (140)
T 2dj1_A 23 NDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLKDNDPPIAVAKIDATS--ASMLASKFDVSGYP 93 (140)
T ss_dssp CTTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHHSSSSCCEEEEECTTT--CHHHHHHTTCCSSS
T ss_pred ChHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCceEEEEEeCcc--cHHHHHHCCCCccC
Confidence 456677655 4689999999999999999996543 2344444443 8888877764 35688999999999
Q ss_pred EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+++|+. +|+ +.++.|..+.+.|...|...+..
T Consensus 94 t~~~~~--~G~-~~~~~g~~~~~~l~~~l~~~~~~ 125 (140)
T 2dj1_A 94 TIKILK--KGQ-AVDYDGSRTQEEIVAKVREVSQP 125 (140)
T ss_dssp EEEEEE--TTE-EEECCSCCCHHHHHHHHHHHHSS
T ss_pred eEEEEE--CCc-EEEcCCCCCHHHHHHHHHHhcCC
Confidence 999994 688 77888999999999988888875
No 63
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=98.70 E-value=1.5e-07 Score=73.36 Aligned_cols=98 Identities=9% Similarity=0.140 Sum_probs=72.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|++++.. ..+|+++|+|+++||..|+.+...+ ..+.+-. .++.+..+|.+. ...++..|++.++|++++
T Consensus 9 ~~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~~---~~~~~~~-~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 80 (107)
T 1gh2_A 9 DPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAF---SSMSNKY-PQAVFLEVDVHQ--CQGTAATNNISATPTFQF 80 (107)
T ss_dssp GGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHHHh--CCCCEEEEEEECCCChhhHHHHHHH---HHHHHHC-CCcEEEEEECcc--CHHHHHhcCCCcccEEEE
Confidence 4567777654 5789999999999999999996432 2222222 368888888865 456889999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
+. +|+.+.++.|. .+++|...|...+
T Consensus 81 ~~--~G~~~~~~~G~-~~~~l~~~l~~~l 106 (107)
T 1gh2_A 81 FR--NKVRIDQYQGA-DAVGLEEKIKQHL 106 (107)
T ss_dssp EE--TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred EE--CCeEEEEEeCC-CHHHHHHHHHHhc
Confidence 84 69999999995 4455666665543
No 64
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.70 E-value=1.3e-07 Score=77.19 Aligned_cols=100 Identities=12% Similarity=0.071 Sum_probs=76.1
Q ss_pred HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-------------------------hh
Q 019378 71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-------------------------SE 125 (342)
Q Consensus 71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-------------------------~e 125 (342)
+..+.-.+|+++|+|+++||..|..+...+ ..+.+-+.+.+.++.++.+. ..
T Consensus 22 ~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 98 (148)
T 2b5x_A 22 TREQLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDS 98 (148)
T ss_dssp CHHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECS
T ss_pred cchhhcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECC
Confidence 344455789999999999999999886432 23444444447777777653 12
Q ss_pred HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 126 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 126 g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
...+++.|++..+|+++|||+ +|+++.++.|..+++++...|...+..
T Consensus 99 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 99 DHALTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp SCHHHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred chhHHHHhCCCCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence 246788999999999999997 799999999999999999888887763
No 65
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=98.69 E-value=1.2e-07 Score=75.45 Aligned_cols=88 Identities=8% Similarity=0.069 Sum_probs=65.1
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCC--hhHHHHHHhCCCCCCcEEEEEeCC
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVDPI 147 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s--~eg~~~~~~y~v~~~P~l~ii~p~ 147 (342)
.+...+++++|+|+++||.+|+.+... +.++.+ ..+++..++... .+...++..|++.++|+++++.
T Consensus 24 ~~~~~~~~~~v~f~a~wC~~C~~~~p~------l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~-- 95 (118)
T 1zma_A 24 EALDKKETATFFIGRKTCPYCRKFAGT------LSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT-- 95 (118)
T ss_dssp HHHHTTCCEEEEEECTTCHHHHHHHHH------HHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE--
T ss_pred HHHhCCCeEEEEEECCCCccHHHHHHH------HHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEE--
Confidence 344678999999999999999999643 333333 345554332221 3345788999999999999986
Q ss_pred CCceEEEEeCCCChHHHHHHH
Q 019378 148 TGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 148 tG~~l~~~~G~~~~~~~l~~L 168 (342)
+|+.+.++.|..+++.|...|
T Consensus 96 ~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 96 DGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp TTEEEEECCTTCCHHHHHHHH
T ss_pred CCEEEEEecCCCCHHHHHHHh
Confidence 689889999999998887655
No 66
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=98.68 E-value=2e-07 Score=73.97 Aligned_cols=94 Identities=16% Similarity=0.271 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
.+|.+++.. ..+|+++|+|+++||..|+.+.. .+.++.+. ++.+..+|.+. ...+++.|++.++|++++
T Consensus 22 ~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 91 (117)
T 2xc2_A 22 GDLESLLEQ--HKNKLVVVDFFATWCGPCKTIAP------LFKELSEKYDAIFVKVDVDK--LEETARKYNISAMPTFIA 91 (117)
T ss_dssp THHHHHHHH--TTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTSSSEEEEEETTT--SHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHcCcEEEEEECCc--cHHHHHHcCCCccceEEE
Confidence 667777653 37899999999999999999964 34455444 67888877764 456889999999999888
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
+. +|+.+.++.| .+++.+.+.|...
T Consensus 92 ~~--~G~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 92 IK--NGEKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp EE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred Ee--CCcEEEEEeC-CCHHHHHHHHHHh
Confidence 84 7999999999 5888877766554
No 67
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=98.67 E-value=9.3e-08 Score=76.29 Aligned_cols=97 Identities=8% Similarity=0.019 Sum_probs=76.7
Q ss_pred HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCce
Q 019378 72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 151 (342)
Q Consensus 72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~ 151 (342)
......+|++||+|+++||..|+.+...+ ..+.+.+..++.+..++.+.. ..++..|++.++|+++++++ .|.
T Consensus 15 ~~~~~~~~~~lv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~-~~~- 87 (122)
T 3aps_A 15 EKVLQGKTHWVVDFYAPWCGPCQNFAPEF---ELLARMIKGKVRAGKVDCQAY--PQTCQKAGIKAYPSVKLYQY-ERA- 87 (122)
T ss_dssp HHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEEE-EGG-
T ss_pred HHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCcCC--HHHHHHcCCCccceEEEEeC-CCc-
Confidence 44456789999999999999999997543 455566666899998888653 46889999999999999985 334
Q ss_pred EEEEeCC----CChHHHHHHHHhhhhcC
Q 019378 152 MRSWCGM----VQPESLLEDLVPFMDGG 175 (342)
Q Consensus 152 l~~~~G~----~~~~~~l~~L~~~l~~~ 175 (342)
+.++.|. .+++.|...|...+...
T Consensus 88 ~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 115 (122)
T 3aps_A 88 KKSIWEEQINSRDAKTIAALIYGKLETL 115 (122)
T ss_dssp GTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred cceeeccccCcCCHHHHHHHHHHHHHhh
Confidence 6667775 79999999888888754
No 68
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=98.67 E-value=3.1e-07 Score=70.62 Aligned_cols=94 Identities=14% Similarity=0.263 Sum_probs=71.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
.+|++++.. ..+|+++|+|+++||..|+.+... +.++.+. ++.++.++.+. ...++..|++..+|+++
T Consensus 8 ~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~------l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~ 77 (104)
T 2vim_A 8 ADLEKLINE--NKGRLIVVDFFAQWCGPCRNIAPK------VEALAKEIPEVEFAKVDVDQ--NEEAAAKYSVTAMPTFV 77 (104)
T ss_dssp HHHHHHHHT--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHh--cCCCeEEEEEECCCCHHHHHhhHH------HHHHHHHCCCCEEEEEeccC--CHHHHHHcCCccccEEE
Confidence 345555532 378999999999999999999643 3333332 68888888764 34688999999999988
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 143 VVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
++. +|+.+.++.| .+++.|.+.|..+
T Consensus 78 ~~~--~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 78 FIK--DGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp EEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred EEe--CCcEEEEEeC-CCHHHHHHHHHhh
Confidence 886 7999999999 5888887766654
No 69
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.67 E-value=1.6e-07 Score=77.62 Aligned_cols=96 Identities=13% Similarity=0.171 Sum_probs=73.9
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChh--------------------HHHHHHhCC
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE--------------------GKKVCTYYK 134 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~e--------------------g~~~~~~y~ 134 (342)
-.+|++||+|.++||..|..+...+ ..+.+-+. .++.++.++.+... ...++..|+
T Consensus 24 ~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (151)
T 2f9s_A 24 LKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD 100 (151)
T ss_dssp GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTT
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcC
Confidence 3689999999999999999876432 12333333 36777777775432 235778899
Q ss_pred CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+..+|+++|||+ +|+++.++.|..+.+.+...|...+...
T Consensus 101 v~~~P~~~lid~-~G~i~~~~~G~~~~~~l~~~l~~ll~~~ 140 (151)
T 2f9s_A 101 VSPLPTTFLINP-EGKVVKVVTGTMTESMIHDYMNLIKPGE 140 (151)
T ss_dssp CCSSCEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred CCCCCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999999997 7999999999999999999888887653
No 70
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=98.67 E-value=1.1e-07 Score=78.79 Aligned_cols=95 Identities=19% Similarity=0.125 Sum_probs=74.9
Q ss_pred HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChh----------------------HHH
Q 019378 75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSE----------------------GKK 128 (342)
Q Consensus 75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~e----------------------g~~ 128 (342)
.-.+|++||+|..+||..|..+.. .+.++. ..++.++.++.++.+ ...
T Consensus 21 ~~~gk~vlv~F~a~wC~~C~~~~~------~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (151)
T 3raz_A 21 SLKAPVRIVNLWATWCGPCRKEMP------AMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRN 94 (151)
T ss_dssp GCCSSEEEEEEECTTCHHHHHHHH------HHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHH
T ss_pred HhCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHH
Confidence 347899999999999999998753 344433 346888888887543 345
Q ss_pred HHHhCC--CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378 129 VCTYYK--LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 176 (342)
Q Consensus 129 ~~~~y~--v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~~ 176 (342)
++..|+ +..+|+++|||+ .|+++.++.|..+++++.+.|.......+
T Consensus 95 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~l~~~~~ 143 (151)
T 3raz_A 95 FMKTYGNTVGVLPFTVVEAP-KCGYRQTITGEVNEKSLTDAVKLAHSKCR 143 (151)
T ss_dssp HHHTTTCCSCCSSEEEEEET-TTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred HHHHhCCccCCCCEEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 677888 899999999997 79999999999999999988888877543
No 71
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.64 E-value=2.3e-07 Score=81.84 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+|+.++ ..+|++||+|+++||..|..+...+ .++.+.+..++.+..++++. ...++..|++.++|+++|+
T Consensus 105 ~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~ 175 (210)
T 3apq_A 105 REFDAAV----NSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVDGLLRIGAVNCGD--DRMLCRMKGVNSYPSLFIF 175 (210)
T ss_dssp HHHHHHH----HHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHH----ccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhcCceEEEEEECCc--cHHHHHHcCCCcCCeEEEE
Confidence 3455544 7789999999999999999997543 45555566678898888765 3568899999999999999
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 145 DPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
..|+.+.++.|..+.+.|...|...+...
T Consensus 176 --~~G~~~~~~~G~~~~~~l~~~i~~~l~~~ 204 (210)
T 3apq_A 176 --RSGMAAVKYNGDRSKESLVAFAMQHVRST 204 (210)
T ss_dssp --CTTSCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred --ECCCceeEecCCCCHHHHHHHHHHhCccc
Confidence 37898999999999999999888888753
No 72
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=98.64 E-value=1.7e-07 Score=77.34 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=74.7
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH---------------------HHHHHhCC
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG---------------------KKVCTYYK 134 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg---------------------~~~~~~y~ 134 (342)
.+|++||+|+++||..|..+...+ ..+.+-+. .++.++.++.+.... ..++..|+
T Consensus 29 ~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 105 (152)
T 2lja_A 29 KGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYL 105 (152)
T ss_dssp TTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTT
T ss_pred CCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcC
Confidence 589999999999999998875432 12222232 358888888776431 25778899
Q ss_pred CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378 135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 176 (342)
Q Consensus 135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~~ 176 (342)
+..+|+++||++ +|+++.+..|..+.+++...|...+..+.
T Consensus 106 v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~~ 146 (152)
T 2lja_A 106 INGIPRFILLDR-DGKIISANMTRPSDPKTAEKFNELLGLEG 146 (152)
T ss_dssp CCSSCCEEEECT-TSCEEESSCCCTTCHHHHHHHHHHHTCCS
T ss_pred cCCCCEEEEECC-CCeEEEccCCCCCHHHHHHHHHHHhcccc
Confidence 999999999997 69999888898999999999988887654
No 73
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=98.64 E-value=1.4e-07 Score=79.09 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378 66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 145 (342)
+|++++. ...+|++||+|+.+||.+|+.+...+ ..+.+-+.+++.++.+|++. ...++..|++.++|+++++.
T Consensus 13 ~~~~~i~--~~~~k~vlv~F~a~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~ 85 (149)
T 3gix_A 13 EVDQAIK--STAEKVLVLRFGRDEDPVCLQLDDIL---SKTSSDLSKMAAIYLVDVDQ--TAVYTQYFDISYIPSTVFFF 85 (149)
T ss_dssp HHHHHHH--HCCSSEEEEEEECTTSHHHHHHHHHH---HHHHTTTTTTEEEEEEETTT--CCHHHHHTTCCSSSEEEEEE
T ss_pred HHHHHHH--hcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCc--CHHHHHHcCCCccCeEEEEE
Confidence 4444443 25799999999999999999996432 12333334459999988864 44688999999999999554
Q ss_pred CCCCceE---------EEEeC-CCChHHHHHHHHhhhh
Q 019378 146 PITGQKM---------RSWCG-MVQPESLLEDLVPFMD 173 (342)
Q Consensus 146 p~tG~~l---------~~~~G-~~~~~~~l~~L~~~l~ 173 (342)
.|+.+ .++.| ..+.++|...|..++.
T Consensus 86 --~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~ 121 (149)
T 3gix_A 86 --NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR 121 (149)
T ss_dssp --TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred --CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence 68988 88999 8899999888887765
No 74
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.63 E-value=1.2e-07 Score=84.66 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=82.3
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|++++ .+.+|++||+|+++||..|+.+...+ ..+.+.+..++.+..++++.. ..++..|++..+|+++|
T Consensus 19 ~~~f~~~v---~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~ 90 (222)
T 3dxb_A 19 DDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLL 90 (222)
T ss_dssp TTTHHHHH---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--TTTGGGGTCCSBSEEEE
T ss_pred HHHHHHHH---HhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCCC--HHHHHHcCCCcCCEEEE
Confidence 45666654 45799999999999999999997543 455555566788888887653 35788999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+. .|+.+.++.|..+.+.|...|...+...
T Consensus 91 ~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 120 (222)
T 3dxb_A 91 FK--NGEVAATKVGALSKGQLKEFLDANLAGS 120 (222)
T ss_dssp EE--TTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred EE--CCeEEEEeccccChHHHHHHHHhhcccc
Confidence 96 6999999999999999999998888754
No 75
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.63 E-value=1.1e-07 Score=77.49 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=68.4
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCCh-----------------------hHHHHHHh
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS-----------------------EGKKVCTY 132 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~-----------------------eg~~~~~~ 132 (342)
.+|++||+|+++||..|..+...+ ..+.+-+. .++.++.++.+.. ....++..
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE 109 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence 789999999999999999986432 22223333 4678888777541 13367889
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
|++..+|+++|||+ +|+++..+.|..+.+.|...|
T Consensus 110 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l 144 (145)
T 3erw_A 110 YHIITIPTSFLLNE-KGEIEKTKIGPMTAEQLKEWT 144 (145)
T ss_dssp TTCCEESEEEEECT-TCCEEEEEESCCCHHHHHHHH
T ss_pred cCcCccCeEEEEcC-CCcEEEEEcCCcCHHHHHHhh
Confidence 99999999999997 799999999999999887655
No 76
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.63 E-value=1.9e-07 Score=74.77 Aligned_cols=91 Identities=14% Similarity=0.252 Sum_probs=68.8
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--------------------------hhHHHH
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--------------------------SEGKKV 129 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--------------------------~eg~~~ 129 (342)
-.+|++||+|+++||..|..+...+ ..+.+-...++.++.++... .....+
T Consensus 20 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 96 (138)
T 4evm_A 20 YKGKKVYLKFWASWCSICLASLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKL 96 (138)
T ss_dssp GTTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHH
T ss_pred hCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHH
Confidence 3689999999999999999876443 23333344577777773211 112357
Q ss_pred HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
++.|++..+|+++|||+ +|+++.++.|..+++++...|..
T Consensus 97 ~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 97 LETYGVRSYPTQAFIDK-EGKLVKTHPGFMEKDAILQTLKE 136 (138)
T ss_dssp HHHTTCCSSSEEEEECT-TCCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHcCcccCCeEEEECC-CCcEEEeecCCCcHHHHHHHHHh
Confidence 78999999999999997 79999999999999998877754
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.63 E-value=1.8e-07 Score=86.13 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=81.6
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
+-..+|++.+ ....+|+++|+|+.+||.+|+.+...+ +.+.+-..+++++..+|++. ...++..|+|.++|++
T Consensus 12 ~~~~~f~~~~--~~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~ 84 (287)
T 3qou_A 12 INESNLQQVL--EQSMTTPVLFYFWSERSQHCLQLTPIL---ESLAAQYNGQFILAKLDCDA--EQMIAAQFGLRAIPTV 84 (287)
T ss_dssp CCTTTHHHHH--TTTTTSCEEEEEECTTCTTTTTTHHHH---HHHHHHHTSSSEEEEEETTT--CHHHHHTTTCCSSSEE
T ss_pred CCHHHHHHHH--HhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEEeCcc--CHHHHHHcCCCCCCeE
Confidence 3456788755 234589999999999999999996433 34555555679999988875 3578999999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
+++. .|+.+.++.|..+.+.+...|...+
T Consensus 85 ~~~~--~G~~~~~~~g~~~~~~l~~~l~~~l 113 (287)
T 3qou_A 85 YLFQ--NGQPVDGFQGPQPEEAIRALLDXVL 113 (287)
T ss_dssp EEEE--TTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred EEEE--CCEEEEEeeCCCCHHHHHHHHHHHc
Confidence 9994 7999999999999988887777665
No 78
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=98.62 E-value=1.6e-07 Score=75.41 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=69.1
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCCh---------------------hHHHHHHh
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTS---------------------EGKKVCTY 132 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~---------------------eg~~~~~~ 132 (342)
-.+|+++|+|+++||..|..+.. .+.++.+. ++.++.++.+.. ....++..
T Consensus 23 ~~~k~~ll~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 96 (136)
T 1zzo_A 23 LLGKPAVLWFWAPWCPTCQGEAP------VVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWAN 96 (136)
T ss_dssp GTTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHH
T ss_pred hCCCeEEEEEEcCCChhHHHHHH------HHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHH
Confidence 36899999999999999999753 33333322 677777776541 23457788
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
|++..+|+++||++ +|+++ .+.|..+.+++...|...+.
T Consensus 97 ~~i~~~P~~~~id~-~g~i~-~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 97 FGVTQQPAYAFVDP-HGNVD-VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp TTCCSSSEEEEECT-TCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred cCCCCCceEEEECC-CCCEE-EEecCCCHHHHHHHHHHHhc
Confidence 99999999999997 78988 99999999999888877654
No 79
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=98.62 E-value=3.4e-07 Score=76.62 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=76.3
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
..+|++++..+ .+|++||+|+++||..|+.+... +.++.+ .++.+..++++. ...++..|++..+|++
T Consensus 20 ~~~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p~------l~~l~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~ 89 (153)
T 2wz9_A 20 AGQFEELLRLK--AKSLLVVHFWAPWAPQCAQMNEV------MAELAKELPQVSFVKLEAEG--VPEVSEKYEISSVPTF 89 (153)
T ss_dssp HHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSSSEE
T ss_pred HHHHHHHHHhc--CCCeEEEEEECCCCHhHHHHHHH------HHHHHHHcCCeEEEEEECCC--CHHHHHHcCCCCCCEE
Confidence 35566655432 48999999999999999998643 333333 368888888865 3468899999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+|++ +|+.+.++.|. +++++...|...+..
T Consensus 90 ~~~~--~G~~~~~~~G~-~~~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 90 LFFK--NSQKIDRLDGA-HAPELTKKVQRHASS 119 (153)
T ss_dssp EEEE--TTEEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred EEEE--CCEEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 9998 69999999995 778888888877764
No 80
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.61 E-value=3.3e-07 Score=75.26 Aligned_cols=99 Identities=16% Similarity=0.276 Sum_probs=73.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|.+++. +.++ ++|+|+++||..|+.+...+ ..+...+..++.++.++.+. ...++..|++..+|+++|
T Consensus 40 ~~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~ 110 (140)
T 1v98_A 40 EKGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPIL---EELARDHAGRLKVVKVNVDE--HPGLAARYGVRSVPTLVL 110 (140)
T ss_dssp ------------CCCE-EEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCC--CHHHHHHCCCCccCEEEE
Confidence 445555443 3455 99999999999999997543 34555555679999888875 356889999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+. +|+.+.++.|..+.+.|...|...++
T Consensus 111 ~~--~G~~~~~~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 111 FR--RGAPVATWVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp EE--TTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred Ee--CCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence 84 79999999999999999888887764
No 81
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=98.61 E-value=5.1e-08 Score=78.95 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=71.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCc--------------chhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHH
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEF--------------SSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKV 129 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~--------------~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~ 129 (342)
..+|++++ .+.+|+++|+|+++||. .|+.+... | +++.+-+..++.+..++++.. ..+
T Consensus 10 ~~~f~~~~---~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~-~--~~l~~~~~~~~~~~~vd~d~~--~~l 81 (123)
T 1oaz_A 10 DDSFDTDV---LKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPI-L--DEIADEYQGKLTVAKLNIDQN--PGT 81 (123)
T ss_dssp STTHHHHT---TSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHH-H--TTC-------CEEEEEETTSC--TTT
T ss_pred hhhHHHHH---HhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHH-H--HHHHHHhcCCeEEEEEECCCC--HHH
Confidence 35565544 46799999999999999 77776542 2 123333445688888888753 357
Q ss_pred HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
+..|++.++|+++++ + +|+.+.++.|..++++|.+.|...+
T Consensus 82 ~~~~~v~~~Pt~~~~-~-~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 82 APKYGIRGIPTLLLF-K-NGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp GGGGTCCBSSEEEEE-E-SSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred HHHcCCCccCEEEEE-E-CCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 889999999999999 3 7999999999999999887776543
No 82
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=98.60 E-value=2.9e-07 Score=72.50 Aligned_cols=95 Identities=7% Similarity=0.130 Sum_probs=72.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
..+| +++ .++|+++|+|+++||..|+.+.. .+.++... ++.+..++.+ +...++..|++..+|++
T Consensus 10 ~~~f-~~~----~~~~~~vv~f~a~wC~~C~~~~~------~l~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~ 76 (110)
T 2l6c_A 10 EAGM-AHF----EGLSDAIVFFHKNLCPHCKNMEK------VLDKFGARAPQVAISSVDSE--ARPELMKELGFERVPTL 76 (110)
T ss_dssp GCSH-HHH----TTCSEEEEEEECSSCSTHHHHHH------HHHHHHTTCTTSCEEEEEGG--GCHHHHHHTTCCSSCEE
T ss_pred HHHH-HHH----HcCCCEEEEEECCCCHhHHHHHH------HHHHHHHHCCCcEEEEEcCc--CCHHHHHHcCCcccCEE
Confidence 4556 444 46799999999999999999853 33444433 4667766664 45668899999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+++. +|+.+.++.|..++++|...|..+..
T Consensus 77 ~~~~--~G~~v~~~~G~~~~~~l~~~~~~~~~ 106 (110)
T 2l6c_A 77 VFIR--DGKVAKVFSGIMNPRELQALYASIHH 106 (110)
T ss_dssp EEEE--SSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred EEEE--CCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence 9993 79999999999999998877766654
No 83
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.60 E-value=2e-07 Score=75.10 Aligned_cols=89 Identities=10% Similarity=0.069 Sum_probs=69.0
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCCh--------------------hHHHHHHhC
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTS--------------------EGKKVCTYY 133 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~--------------------eg~~~~~~y 133 (342)
-.+|+++|+|+++||..|..+.. .+.++.+. ++.++.++.++. ....+++.|
T Consensus 22 ~~~k~~lv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 95 (136)
T 1lu4_A 22 LQGKPAVLWFWTPWCPFCNAEAP------SLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARY 95 (136)
T ss_dssp GTTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHT
T ss_pred hCCCEEEEEEECCcChhHHHHHH------HHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhc
Confidence 46899999999999999999753 33333332 677777777652 134577889
Q ss_pred CCCCCcEEEEEeCCCCceEEEEe---CCCChHHHHHHHHhhh
Q 019378 134 KLDSIPVVLVVDPITGQKMRSWC---GMVQPESLLEDLVPFM 172 (342)
Q Consensus 134 ~v~~~P~l~ii~p~tG~~l~~~~---G~~~~~~~l~~L~~~l 172 (342)
++..+|+++|||+ +|+++ ++. |..+++++.+.|...+
T Consensus 96 ~i~~~P~~~lid~-~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 96 NVPWQPAFVFYRA-DGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp TCCSSSEEEEECT-TSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred CCCCCCEEEEECC-CCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 9999999999997 78988 899 9999999988877654
No 84
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=98.58 E-value=5.6e-07 Score=71.99 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=73.0
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
-..+|.+.+.. ..+|+++|+|+++||..|+.+... +.++.++ ++.+..++.+. +...++..|++.++|+
T Consensus 24 ~~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~------l~~~~~~~~~~~~~~vd~~~-~~~~~~~~~~v~~~Pt 94 (124)
T 1faa_A 24 NKDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPT 94 (124)
T ss_dssp CTTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSSSSE
T ss_pred cchhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHH------HHHHHHHCCCCEEEEEecCc-chHHHHHHcCCCeeeE
Confidence 45677777653 478999999999999999999644 3333332 47788877753 3456889999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
++++. +|+.+.++.|.. ++++.+.|..+
T Consensus 95 ~~~~~--~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 95 FKILK--ENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEE--TTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEe--CCcEEEEEcCCC-HHHHHHHHHHh
Confidence 76663 699999999975 77777766654
No 85
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=98.58 E-value=1.9e-07 Score=79.25 Aligned_cols=100 Identities=9% Similarity=0.069 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+|++++.. +..|+++|.|..+||.+|..+..-+ +++.+-..+..+|+.+|++. ...++..|+|.+.|+++++
T Consensus 30 ~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~Pvl---eelA~e~~~~v~f~kVDVDe--~~e~a~~y~V~siPT~~fF 102 (160)
T 2av4_A 30 WAVDQAIVN--EDERLVCIRFGHDYDPDCMKMDELL---YKVADDIKNFCVIYLVDITE--VPDFNTMYELYDPVSVMFF 102 (160)
T ss_dssp HHHHHHHHH--CSSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTT--CCTTTTTTTCCSSEEEEEE
T ss_pred HHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHH---HHHHHHccCCcEEEEEECCC--CHHHHHHcCCCCCCEEEEE
Confidence 456666632 5789999999999999999995221 23333334468999999975 4458999999999999988
Q ss_pred eCCCCceE--E-------EEeCCCC-hHHHHHHHHhhhh
Q 019378 145 DPITGQKM--R-------SWCGMVQ-PESLLEDLVPFMD 173 (342)
Q Consensus 145 ~p~tG~~l--~-------~~~G~~~-~~~~l~~L~~~l~ 173 (342)
- +|+.+ . ++.|..+ .++|++.|..++.
T Consensus 103 k--~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r 139 (160)
T 2av4_A 103 Y--RNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR 139 (160)
T ss_dssp E--TTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred E--CCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence 6 58876 5 7889877 8999998888775
No 86
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=98.57 E-value=2.6e-07 Score=75.73 Aligned_cols=88 Identities=10% Similarity=0.028 Sum_probs=70.1
Q ss_pred eEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCC-------hhHHHHHHhCCCCCCcEEEEEeCCCCce
Q 019378 80 WLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDT-------SEGKKVCTYYKLDSIPVVLVVDPITGQK 151 (342)
Q Consensus 80 ~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s-------~eg~~~~~~y~v~~~P~l~ii~p~tG~~ 151 (342)
+++|+|+++||.+|+.+. +.+.++.+. .+.+..++++. .+...++..|++.++|+++|+. .|++
T Consensus 33 ~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~--~G~~ 104 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYK--EGRI 104 (135)
T ss_dssp SEEEEEEETTCHHHHHHH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEE--TTEE
T ss_pred cEEEEEECCcCHhhhHhC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEc--CCEE
Confidence 999999999999999985 455666554 26667777744 4567789999999999999988 6999
Q ss_pred EEEEeCCCChHHHHHHHHhhhhcC
Q 019378 152 MRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 152 l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+.++.|..+.+.+...+...++..
T Consensus 105 v~~~~G~~~~~~~~~~i~~~~~~~ 128 (135)
T 3emx_A 105 VDKLVGATPWSLKVEKAREIYGGE 128 (135)
T ss_dssp EEEEESCCCHHHHHHHHHHHC---
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCC
Confidence 999999999998888777777653
No 87
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=98.55 E-value=3.3e-07 Score=71.88 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=71.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|.+++.. ..+|++||+|+++||..|+.+...+ ..+.+-.. ++.+..++.+. +...++..|++.++|++++
T Consensus 12 ~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~~~ 84 (111)
T 2pu9_C 12 KDTFWPIVKA--AGDKPVVLDMFTQWCGPSKAMAPKY---EKLAEEYL-DVIFLKLDCNQ-ENKTLAKELGIRVVPTFKI 84 (111)
T ss_dssp TTTHHHHHTT--CTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSS-TTHHHHHHHCCSBSSEEEE
T ss_pred hHHHHHHHHh--cCCCEEEEEEECCcCHhHHHHCHHH---HHHHHHCC-CeEEEEEecCc-chHHHHHHcCCCeeeEEEE
Confidence 4567776642 2589999999999999999996432 22222222 47888888763 3457889999999999554
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
.+ +|+.+.++.|. ++++|...|..++
T Consensus 85 -~~-~G~~~~~~~G~-~~~~l~~~l~~~~ 110 (111)
T 2pu9_C 85 -LK-ENSVVGEVTGA-KYDKLLEAIQAAR 110 (111)
T ss_dssp -ES-SSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred -Ee-CCcEEEEEcCC-CHHHHHHHHHHhh
Confidence 43 79999999997 4787777766554
No 88
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=98.54 E-value=2.2e-08 Score=80.70 Aligned_cols=101 Identities=15% Similarity=0.274 Sum_probs=80.1
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
-..+|++++..|+..+|+++|+|+++||..|+.+.. .+.++.+. ++.++.++.+. ...+++.|++..+|+
T Consensus 21 ~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt 92 (130)
T 1wmj_A 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAP------VFAEYAKKFPGAVFLKVDVDE--LKEVAEKYNVEAMPT 92 (130)
T ss_dssp SSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHH------HHHHHHHHCTTBCCEECCTTT--SGGGHHHHTCCSSCC
T ss_pred CHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHH------HHHHHHHHCCCCEEEEEeccc--hHHHHHHcCCCccce
Confidence 357799999999999999999999999999999864 33444433 57777766654 345788999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
++|+ .+|+.+.++.| .+++++...|...+..
T Consensus 93 ~~~~--~~g~~~~~~~g-~~~~~l~~~l~~~~~~ 123 (130)
T 1wmj_A 93 FLFI--KDGAEADKVVG-ARKDDLQNTIVKHVGA 123 (130)
T ss_dssp CCBC--TTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred EEEE--eCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence 8877 37888888889 5788888888777764
No 89
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=98.54 E-value=4e-07 Score=75.62 Aligned_cols=91 Identities=7% Similarity=0.112 Sum_probs=71.0
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE---
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR--- 153 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~--- 153 (342)
.+|+++|+|+.+||.+|+.+...+ +++.+-...++.+..+|++.. ..++..|++.++|+++++. +|+.+.
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~i~~~Pt~~~~~--~G~~v~~~~ 94 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEV--PDFNKMYELYDPCTVMFFF--RNKHIMIDL 94 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTC--CTTTTSSCSCSSCEEEEEE--TTEEEEEEC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEccccC--HHHHHHcCCCCCCEEEEEE--CCcEEEEec
Confidence 589999999999999999997543 344444556799999988753 3478899999999999996 588775
Q ss_pred ------EEeCCCC-hHHHHHHHHhhhhc
Q 019378 154 ------SWCGMVQ-PESLLEDLVPFMDG 174 (342)
Q Consensus 154 ------~~~G~~~-~~~~l~~L~~~l~~ 174 (342)
++.|.++ .++|+..|..++..
T Consensus 95 g~~~~~~~~g~~~~~~~l~~~i~~~~~~ 122 (142)
T 1qgv_A 95 GTGNNNKINWAMEDKQEMVDIIETVYRG 122 (142)
T ss_dssp C------CCSCCSCHHHHHHHHHHHHHH
T ss_pred CCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence 4566664 88898888887764
No 90
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=98.54 E-value=8.6e-07 Score=73.98 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=71.6
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCCh--hHHHHHHh-----------------C--
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS--EGKKVCTY-----------------Y-- 133 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~--eg~~~~~~-----------------y-- 133 (342)
-.+|++||+|+++||..|..+...+ ..+.+-+. .++.++.++.+.. ....+... |
T Consensus 32 ~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (165)
T 3or5_A 32 LKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNG 108 (165)
T ss_dssp GTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHT
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhh
Confidence 3689999999999999999986443 22333333 3588888877653 22333322 2
Q ss_pred ----CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 134 ----KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 134 ----~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
++..+|+++|||+ +|+++.++.|..+++++...|...+...
T Consensus 109 ~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 153 (165)
T 3or5_A 109 YIDGGITGIPTSFVIDA-SGNVSGVIVGPRSKADFDRIVKMALGAK 153 (165)
T ss_dssp TSTTCSCSSSEEEEECT-TSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred hhccCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence 7899999999997 7999999999999999999999998754
No 91
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=98.53 E-value=1.5e-07 Score=74.22 Aligned_cols=101 Identities=12% Similarity=0.191 Sum_probs=74.9
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHHHHHHhCCCCCC
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSI 138 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~~~~~~y~v~~~ 138 (342)
+-..+|++++ +.+|++||+|+++||..|+.+...+ ..+.+.+. .++++..+|.+.. ..++..|++.++
T Consensus 12 l~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~ 82 (120)
T 1mek_A 12 LRKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATEE--SDLAQQYGVRGY 82 (120)
T ss_dssp CCTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTTC--CSSHHHHTCCSS
T ss_pred echhhHHHHH----ccCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCCC--HHHHHHCCCCcc
Confidence 3456777665 4689999999999999999986432 12333333 3577887777543 357788999999
Q ss_pred cEEEEEeCCCCceE--EEEeCCCChHHHHHHHHhhhh
Q 019378 139 PVVLVVDPITGQKM--RSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 139 P~l~ii~p~tG~~l--~~~~G~~~~~~~l~~L~~~l~ 173 (342)
|+++++. .|+.+ ..+.|..+.+.|...|...+.
T Consensus 83 Pt~~~~~--~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 117 (120)
T 1mek_A 83 PTIKFFR--NGDTASPKEYTAGREADDIVNWLKKRTG 117 (120)
T ss_dssp SEEEEEE--SSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred cEEEEEe--CCCcCCcccccCccCHHHHHHHHHhccC
Confidence 9999995 58776 788999999998877766543
No 92
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=98.52 E-value=3.3e-07 Score=78.54 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=76.2
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hh--------------------HHHHHH
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SE--------------------GKKVCT 131 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~e--------------------g~~~~~ 131 (342)
.+.-.+|++||+|..+||..|.... +.+.++.+.++.++.+++++ .+ ...++.
T Consensus 53 l~~~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (176)
T 3kh7_A 53 EADLKGKPALVNVWGTWCPSCRVEH------PELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGL 126 (176)
T ss_dssp GGGGCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHH
T ss_pred HHHhCCCEEEEEEECCcCHHHHHHH------HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHH
Confidence 3445689999999999999999874 56777777778888777532 21 124567
Q ss_pred hCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 132 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 132 ~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.|++..+|+++|||+ +|+++.++.|..+.+.+.+.|...++.
T Consensus 127 ~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 168 (176)
T 3kh7_A 127 DLGVYGAPETYLIDK-QGIIRHKIVGVVDQKVWREQLAPLYQQ 168 (176)
T ss_dssp HHTCCSSCEEEEECT-TCBEEEEEESCCCHHHHHHHTHHHHHH
T ss_pred HcCCCCCCeEEEECC-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 889999999999997 799999999999999999888888764
No 93
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.52 E-value=1.4e-07 Score=78.10 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=72.1
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh---------------------hHHHHH
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------------------EGKKVC 130 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~---------------------eg~~~~ 130 (342)
.+.-.+|++||+|+++||..|..+. +.+.++.++ ++.++.++.++. ....++
T Consensus 37 l~~~~gk~~ll~f~~~~C~~C~~~~------~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (156)
T 1kng_A 37 PAAFKGKVSLVNVWASWCVPCHDEA------PLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRAS 110 (156)
T ss_dssp GGGGTTSCEEEEEECTTCHHHHHHH------HHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHH
T ss_pred hHHhCCCEEEEEEEcccCHhHHHHH------HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHH
Confidence 3344589999999999999999875 345555543 466776665432 123567
Q ss_pred HhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 131 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 131 ~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+.|++..+|+++||++ +|+++.++.|..+.+.+...|...++
T Consensus 111 ~~~~v~~~P~~~~id~-~G~i~~~~~g~~~~~~l~~~l~~~l~ 152 (156)
T 1kng_A 111 IEWGVYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQME 152 (156)
T ss_dssp HHTTCCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred HhcCcCccCeEEEEcC-CCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence 7899999999999997 79999999999999998888877765
No 94
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=98.51 E-value=1.3e-06 Score=72.49 Aligned_cols=115 Identities=10% Similarity=0.095 Sum_probs=83.3
Q ss_pred HHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCC--cchhhhhhcccCCHHHHHHHhccEEEEEeecCChh
Q 019378 48 RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE--FSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE 125 (342)
Q Consensus 48 ~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~--~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e 125 (342)
.++|....|-+ .+-..+|++.+. +.++++||+|+.+|| .+|+.+.--+ +++.+-....+.++++|++ +
T Consensus 8 ~~rl~~~~g~~--~vt~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~iaPvl---eela~e~~~~v~~~KVdvD--e 77 (137)
T 2qsi_A 8 ARAAARPNAPT--LVDEATVDDFIA---HSGKIVVLFFRGDAVRFPEAADLAVVL---PELINAFPGRLVAAEVAAE--A 77 (137)
T ss_dssp ---------CE--EECTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHHHHHH---HHHHHTSTTTEEEEEECGG--G
T ss_pred HHHHHHhcCCc--ccCHhHHHHHHh---cCCCcEEEEEeCCccCCCchhhHHhHH---HHHHHHccCCcEEEEEECC--C
Confidence 34455555544 356788988773 445699999999999 9999995311 2233333346889987765 5
Q ss_pred HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 126 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 126 g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
...++..|+|.++|+++++. +|+.+.++.|..+.+++...|...+..
T Consensus 78 ~~~la~~ygV~siPTlilFk--dG~~v~~~vG~~~k~~l~~~l~~~l~~ 124 (137)
T 2qsi_A 78 ERGLMARFGVAVCPSLAVVQ--PERTLGVIAKIQDWSSYLAQIGAMLAE 124 (137)
T ss_dssp HHHHHHHHTCCSSSEEEEEE--CCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCccCCEEEEEE--CCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 67899999999999999996 799999999999999999988888753
No 95
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.50 E-value=2.8e-07 Score=77.72 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=72.3
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh---------------------hHHHHHHhCC
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS---------------------EGKKVCTYYK 134 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~---------------------eg~~~~~~y~ 134 (342)
..+|++||+|+++||..|..+. +.+.++.+.++.++.++.+.. ....++..|+
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 122 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 122 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHT
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcC
Confidence 3689999999999999999875 446666666666666664321 2235677899
Q ss_pred CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+..+|+++||++ +|+++.++.|..+++.+...|...++.
T Consensus 123 v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 161 (168)
T 2b1k_A 123 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWEK 161 (168)
T ss_dssp CCSSSEEEEECT-TSBEEEEEESCCCHHHHHHTTHHHHHH
T ss_pred ccccCEEEEECC-CCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999997 799999999999999988877777653
No 96
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=98.50 E-value=1e-06 Score=72.74 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=70.5
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh--hH-------------------HHHHHhC
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS--EG-------------------KKVCTYY 133 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~--eg-------------------~~~~~~y 133 (342)
-.+|++||+|+++||..|..+...+ ..+.+-+.+ ++.++.++.+.. +. ..++..|
T Consensus 26 ~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (154)
T 3kcm_A 26 LKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLY 102 (154)
T ss_dssp GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHH
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHh
Confidence 3689999999999999999986543 233333333 677777777763 22 2377889
Q ss_pred CCCCCcEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhhhhcC
Q 019378 134 KLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMDGG 175 (342)
Q Consensus 134 ~v~~~P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~l~~~ 175 (342)
++..+|+++||++ +|+++.++.|.. +.+++...|.......
T Consensus 103 ~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~ 145 (154)
T 3kcm_A 103 GTTGVPETFVIDR-HGVILKKVVGAMEWDHPEVIAFLNNELSKA 145 (154)
T ss_dssp TCCSBCEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTC----
T ss_pred CCCCCCeEEEECC-CCcEEEEEcCCCccccHHHHHHHHHHHHHh
Confidence 9999999999997 799999999975 6678888887777654
No 97
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=98.50 E-value=1.6e-06 Score=71.38 Aligned_cols=98 Identities=12% Similarity=0.194 Sum_probs=71.1
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH-H-------------------HHHHh
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG-K-------------------KVCTY 132 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg-~-------------------~~~~~ 132 (342)
+.-.+|++||+|.++||..|..+...+ ..+.+-+. .++.++.++.+.... . .++..
T Consensus 24 ~~~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 100 (152)
T 3gl3_A 24 SDKTGSVVYLDFWASWCGPCRQSFPWM---NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRL 100 (152)
T ss_dssp GGGTTSEEEEEEECTTCTHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHH
T ss_pred HHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHH
Confidence 334689999999999999999886542 22333333 347777777764321 1 56778
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCCC--hHHHHHHHHhhhhcC
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMVQ--PESLLEDLVPFMDGG 175 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~--~~~~l~~L~~~l~~~ 175 (342)
|++..+|+++|||+ .|+++.++.|..+ .+++.+.|...+...
T Consensus 101 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~ 144 (152)
T 3gl3_A 101 YGVKGMPTSFLIDR-NGKVLLQHVGFRPADKEALEQQILAALGGN 144 (152)
T ss_dssp TTCCSSSEEEEECT-TSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred cCCCCCCeEEEECC-CCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence 99999999999997 7999999999654 468877777776654
No 98
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=98.49 E-value=5.8e-07 Score=73.41 Aligned_cols=90 Identities=18% Similarity=0.309 Sum_probs=68.5
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hc-cEEEEEeecCChh-----------------------HHHHHH
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-ST-NFIFWQVYDDTSE-----------------------GKKVCT 131 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~-~FV~w~~~~~s~e-----------------------g~~~~~ 131 (342)
.+|++||+|+++||..|..+...+ ..+.+-+ .+ ++.++.++.+... ...++.
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK 108 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred CCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence 689999999999999999986432 2233333 32 4888888887654 457889
Q ss_pred hCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 132 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 132 ~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.|++..+|+++|||+ +|+++.+.. +.+.+...|...+.
T Consensus 109 ~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 109 QYAILTLPTNILLSP-TGKILARDI---QGEALTGKLKELLK 146 (148)
T ss_dssp HTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHC-
T ss_pred hcCCCCcCEEEEECC-CCeEEEecC---CHHHHHHHHHHHHc
Confidence 999999999999997 788876654 78888777776654
No 99
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=98.47 E-value=5.4e-07 Score=73.76 Aligned_cols=98 Identities=7% Similarity=0.114 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..|++++.. ..+|++||+|+++||..|+.+.. .+.++.+. +++++.++.+. ...++..|++..+|++++
T Consensus 29 ~~~~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~ 98 (133)
T 3cxg_A 29 GSLNQVFSS--TQNSSIVIKFGAVWCKPCNKIKE------YFKNQLNYYYVTLVDIDVDI--HPKLNDQHNIKALPTFEF 98 (133)
T ss_dssp THHHHHHTC---CCSEEEEEEECTTCHHHHHTHH------HHHGGGGTEECEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred hHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHhcCEEEEEEeccc--hHHHHHhcCCCCCCEEEE
Confidence 566666643 34799999999999999999843 34444433 46777777754 456889999999999999
Q ss_pred EeCCCCc--eEEEEeCCCChHHHHHHHHhhhh
Q 019378 144 VDPITGQ--KMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 144 i~p~tG~--~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+...+|+ ++.++.|. ++++|...|...+.
T Consensus 99 ~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 99 YFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL 129 (133)
T ss_dssp EEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred EEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence 8322466 88899998 88888887777654
No 100
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.47 E-value=2.7e-07 Score=75.79 Aligned_cols=93 Identities=17% Similarity=0.273 Sum_probs=68.3
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
-..+|.+++..+ ..+|++||+|+.+||..|+.+.. .+.++.++ ++.+..++++... ..|++..+|+
T Consensus 16 ~~~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~p------~l~~la~~~~~v~~~~vd~~~~~-----~~~~i~~~Pt 83 (135)
T 2dbc_A 16 SGNQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVNQ------HLSVLARKFPETKFVKAIVNSCI-----EHYHDNCLPT 83 (135)
T ss_dssp CHHHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHHH------HHHHHHHHCSSEEEEEECCSSSC-----SSCCSSCCSE
T ss_pred CHHHHHHHHHhc-CCCCEEEEEEECCCChHHHHHHH------HHHHHHHHCCCcEEEEEEhhcCc-----ccCCCCCCCE
Confidence 345566666544 34689999999999999999964 34444443 5788888887642 6899999999
Q ss_pred EEEEeCCCCceEEEEeCCC-------ChHHHHHHHH
Q 019378 141 VLVVDPITGQKMRSWCGMV-------QPESLLEDLV 169 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~-------~~~~~l~~L~ 169 (342)
++++. +|+++.++.|.. +.++|...|.
T Consensus 84 ~~~~~--~G~~v~~~~G~~~~~~~~~~~~~l~~~l~ 117 (135)
T 2dbc_A 84 IFVYK--NGQIEGKFIGIIECGGINLKLEELEWKLS 117 (135)
T ss_dssp EEEES--SSSCSEEEESTTTTTCTTCCHHHHHHHHH
T ss_pred EEEEE--CCEEEEEEEeEEeeCCCcCCHHHHHHHHH
Confidence 99996 799999999975 4555544443
No 101
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=97.86 E-value=1.8e-08 Score=77.65 Aligned_cols=92 Identities=21% Similarity=0.224 Sum_probs=70.5
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
.+...+|+++|+|+++||..|+.+...+ ..+.+.+..++.+..++.+. ...++..|++..+|+++++ + +|+.+
T Consensus 14 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~-~-~g~~~ 86 (106)
T 2yj7_A 14 EVLKSDKPVLVDFWAPWCGPCRMIAPII---EELAKEYEGKVKVVKVNVDE--NPNTAAQYGIRSIPTLLLF-K-NGQVV 86 (106)
Confidence 3356789999999999999999996543 34444455567777766653 4568899999999999999 3 78888
Q ss_pred EEEeCCCChHHHHHHHHhh
Q 019378 153 RSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 153 ~~~~G~~~~~~~l~~L~~~ 171 (342)
.++.|..+.+.+.+.|...
T Consensus 87 ~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 87 DRLVGAQPKEALKERIDKH 105 (106)
Confidence 8899988888877666543
No 102
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=98.47 E-value=2.4e-07 Score=75.79 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=70.2
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH--HH---------------------HHHh
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--KK---------------------VCTY 132 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg--~~---------------------~~~~ 132 (342)
.+|++||+|+++||..|..+...+- .+.+-+. .++.++.++.+.... .. ++..
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLY---DWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKIT 106 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHH---HHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHH
T ss_pred CCCEEEEEEECCCCccHHHHHHHHH---HHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHh
Confidence 6899999999999999998754221 1333333 348888888774322 11 7788
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
|++..+|+++|||+ +|+++.++.|..+.+.+++.|...+.
T Consensus 107 ~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~l~~l~~~l~ 146 (148)
T 3hcz_A 107 YDIYATPVLYVLDK-NKVIIAKRIGYENLDDFLVQYEKSLK 146 (148)
T ss_dssp HCCCSSCEEEEECT-TCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred cCcCCCCEEEEECC-CCcEEEecCCHHHHHHHHHHHHHHhc
Confidence 99999999999997 79999999998888888888876654
No 103
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=98.46 E-value=3.5e-06 Score=69.89 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCeEEEEEecCCCcchhh-hhhcccCCHHHHHHHh----ccEEEEEeecC-------ChhH----------
Q 019378 69 KAKDAASVQDKWLLVNLQSTKEFSSHM-LNRDTWANEAVSQTIS----TNFIFWQVYDD-------TSEG---------- 126 (342)
Q Consensus 69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~-f~rdvl~~~~V~~~i~----~~FV~w~~~~~-------s~eg---------- 126 (342)
+.+..+.-.+|++||+|..+||..|.. +. +.+.++.+ .++.++.++.+ +.+.
T Consensus 21 ~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
T 3lor_A 21 EGLSNEDLRGKVVVVEVFQMLCPGCVNHGV------PQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGI 94 (160)
T ss_dssp CCCCHHHHTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTC
T ss_pred CccCHHHhCCCEEEEEEEcCCCcchhhhhh------HHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCC
Confidence 344455557999999999999999987 33 23333332 35888877752 2211
Q ss_pred ---------H------HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 127 ---------K------KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 127 ---------~------~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
. .++..|++..+|+++|||+ +|+++.++.|..+++.+...|...+..
T Consensus 95 ~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 95 KFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADR-KGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp CSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred CCcEEECCccccchhhhHHHhcccCccceEEEECC-CCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 1 2778899999999999997 799999999999999999988888764
No 104
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=98.45 E-value=3.5e-07 Score=72.68 Aligned_cols=97 Identities=10% Similarity=0.115 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-----cEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-----NFIFWQVYDDTSEGKKVCTYYKLDSIP 139 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-----~FV~w~~~~~s~eg~~~~~~y~v~~~P 139 (342)
.+|++++ ...+|++||+|+++||..|+.+...+ ..+.+.+.. ++.+..+|.+..+ ++. ++..+|
T Consensus 15 ~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~--~v~~~P 83 (121)
T 2djj_A 15 KNYNEIV---LDDTKDVLIEFYAPWCGHCKALAPKY---EELGALYAKSEFKDRVVIAKVDATAND---VPD--EIQGFP 83 (121)
T ss_dssp TTTTTSS---SCTTSCEEEEEECSSCTTHHHHHHHH---HHHHHHHTTSSCTTSSEEEEEETTTSC---CSS--CCSSSS
T ss_pred cCHHHHh---hcCCCCEEEEEECCCCHhHHHhhHHH---HHHHHHHhhcccCCceEEEEEECcccc---ccc--ccCcCC
Confidence 4454443 24689999999999999999997643 356666655 7899999987654 444 999999
Q ss_pred EEEEEeCCCCce-EEEEeCCCChHHHHHHHHhhhh
Q 019378 140 VVLVVDPITGQK-MRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 140 ~l~ii~p~tG~~-l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+++++++ .|++ +.++.|..+.+.|...|...+.
T Consensus 84 t~~~~~~-~~~~~~~~~~G~~~~~~l~~~i~~~~~ 117 (121)
T 2djj_A 84 TIKLYPA-GAKGQPVTYSGSRTVEDLIKFIAENGK 117 (121)
T ss_dssp EEEEECS-SCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred eEEEEeC-cCCCCceEecCCCCHHHHHHHHHhccC
Confidence 9999986 4453 6778899999998887776554
No 105
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=98.45 E-value=8.2e-07 Score=74.03 Aligned_cols=110 Identities=9% Similarity=-0.002 Sum_probs=85.0
Q ss_pred HHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCC--CcchhhhhhcccCCHHHHHHHhc---c-EEEEEeec
Q 019378 48 RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIST---N-FIFWQVYD 121 (342)
Q Consensus 48 ~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~--~~~~~~f~rdvl~~~~V~~~i~~---~-FV~w~~~~ 121 (342)
.++|... |-+ ..-..+|++.+ ...+++||+|..+| |.+|+.+. +-+-++..+ . +.++++|+
T Consensus 11 ~~rl~~~-g~~--~~t~~~F~~~v----~~~~~vlVdF~a~~crCgpCk~ia------Pvleela~e~~g~~v~~~KVdv 77 (140)
T 2qgv_A 11 WQRMLAR-GWT--PVSESRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNP------VMIGELLHEFPDYTWQVAIADL 77 (140)
T ss_dssp HHHHHHT-TCE--ECCHHHHHHHH----HTCSSEEEEECCCTTTCTTTTHHH------HHHHHHHTTCTTSCCEEEECCH
T ss_pred HHHHHhc-CCc--cCCHHHHHHHH----hCCCCEEEEEeCCcccCCcHHHHH------hHHHHHHHHcCCCeEEEEEEEC
Confidence 4455554 432 34567788777 26789999999998 89999985 444444443 4 78887666
Q ss_pred CChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 122 DTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 122 ~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+ +...++..|+|.++|+++++. +|+.+.++.|..+.+++...|..++..
T Consensus 78 D--e~~~lA~~ygV~sIPTlilFk--~G~~v~~~~G~~~k~~l~~~i~~~l~~ 126 (140)
T 2qgv_A 78 E--QSEAIGDRFGAFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEP 126 (140)
T ss_dssp H--HHHHHHHHHTCCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred C--CCHHHHHHcCCccCCEEEEEE--CCEEEEEEecCCCHHHHHHHHHHHhcC
Confidence 4 677899999999999999996 799999999999999999999888853
No 106
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=98.45 E-value=1.3e-06 Score=70.29 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=73.0
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-----hccEEEEEeecCChhHHHHHHhCCCC
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-----STNFIFWQVYDDTSEGKKVCTYYKLD 136 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-----~~~FV~w~~~~~s~eg~~~~~~y~v~ 136 (342)
+-..+|++.+. ..+|++||+|+++||..|+.+... |. .+.+.+ ..++++..+|.+. ...++..|++.
T Consensus 20 l~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p~-~~--~la~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~ 91 (127)
T 3h79_A 20 LTDETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMRL-WD--DLSMSQSQKRNHLTFVAARIDGEK--YPDVIERMRVS 91 (127)
T ss_dssp CCTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHH-HH--HHHHHHHTSTTTTTEEEEEEETTT--CHHHHHHTTCC
T ss_pred CChhhHHHHHh---CCCCCEEEEEECCccHHHHHHhHH-HH--HHHHHHHhcccCCCeEEEEEEccc--cHhHHHhcCCc
Confidence 34567777664 458999999999999999999642 21 122211 2468899888875 45789999999
Q ss_pred CCcEEEEEeCCCCce-EEEEeCCCChHHHHHHHHh
Q 019378 137 SIPVVLVVDPITGQK-MRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 137 ~~P~l~ii~p~tG~~-l~~~~G~~~~~~~l~~L~~ 170 (342)
++|+++++.+ .+.. ...+.|..+.+.|.+.|.+
T Consensus 92 ~~Pt~~~~~~-g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 92 GFPTMRYYTR-IDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp SSSEEEEECS-SCSSSCEECCSCCCHHHHHHHHHH
T ss_pred cCCEEEEEeC-CCCCCceEecCCccHHHHHHHHHh
Confidence 9999999985 2332 2567899999988776654
No 107
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=98.45 E-value=1.1e-06 Score=72.74 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=69.0
Q ss_pred CeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeec---CC----------------------hhHHHHHHh
Q 019378 79 KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYD---DT----------------------SEGKKVCTY 132 (342)
Q Consensus 79 K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~---~s----------------------~eg~~~~~~ 132 (342)
|++||+|.++||..|..+...+ .++.++ ++.++.++. ++ .....++..
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l------~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGL------HRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAAR 104 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHH------HHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTT
T ss_pred CeEEEEEEcccChhHHHHHHHH------HHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHH
Confidence 9999999999999999986443 222222 455555555 22 145677889
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
|++..+|+++|||+ +|+++.++.|..+++++...|......
T Consensus 105 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~ 145 (154)
T 3ia1_A 105 FKVLGQPWTFVVDR-EGKVVALFAGRAGREALLDALLLAGAD 145 (154)
T ss_dssp SSBCSSCEEEEECT-TSEEEEEEESBCCHHHHHHHHHHTTCC
T ss_pred hCCCcccEEEEECC-CCCEEEEEcCCCCHHHHHHHHHhccCc
Confidence 99999999999997 799999999999999998888777664
No 108
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=98.45 E-value=1.9e-06 Score=71.30 Aligned_cols=92 Identities=20% Similarity=0.299 Sum_probs=68.1
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChh-----------------------HHHHHHh
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE-----------------------GKKVCTY 132 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~e-----------------------g~~~~~~ 132 (342)
.+|++||+|.++||..|..+...+ ..+.+-+. .++.++.++.+... ...++..
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES 104 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence 689999999999999999875432 22333333 35888888887532 4668889
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
|++..+|+++|||+ +|+++.+. ++++++.+.|...+...
T Consensus 105 ~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~~l~~~~ 143 (152)
T 2lrn_A 105 YCIVGFPHIILVDP-EGKIVAKE---LRGDDLYNTVEKFVNGA 143 (152)
T ss_dssp TTCCSSCEEEEECT-TSEEEEEC---CCTTHHHHHHHHHHTSS
T ss_pred hCCCcCCeEEEECC-CCeEEEee---CCHHHHHHHHHHHHhhc
Confidence 99999999999997 78988775 35667777777766643
No 109
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.45 E-value=2.4e-07 Score=70.66 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=58.6
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccC-CCcCCChhhcCCcC-ceEEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLD-YDSKLTFEDSGLAN-AMISVT 340 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~-~~~~~Tl~e~gL~~-~~l~v~ 340 (342)
+|+||+++|+.+...|..++||.+|..+|.... +.+...++|..+||++. +. .+.++||+++||.+ ++|+|+
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~-gi~~~~qrL~~~~p~k~--l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAIT-GIAPGSQRILVGYPPEC--LDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHT-CCCTTTCCCEESSCCCC--CCCCCSSCBTTTSSCCTTCEEECC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHh-CCCccceEEEeCCCCcc--cccCCCCCCHHHcCCCCCCEEEEE
Confidence 589999999877655999999999999999863 66677899999999875 42 24789999999985 556553
No 110
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.45 E-value=8.4e-07 Score=73.20 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=73.1
Q ss_pred HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecC--Ch-------------------hHHHHHHh
Q 019378 75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--TS-------------------EGKKVCTY 132 (342)
Q Consensus 75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~--s~-------------------eg~~~~~~ 132 (342)
.-.+|++||+|.++||..|..+...+ ..+.+-+. .++.++.++.+ +. ....++..
T Consensus 25 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 101 (153)
T 2l5o_A 25 DLQGKVTLINFWFPSCPGCVSEMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQA 101 (153)
T ss_dssp HHTTCEEEEEEECTTCTTHHHHHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHH
T ss_pred HhCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHH
Confidence 34689999999999999999875432 12233233 35777666532 21 12357788
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
|++..+|+++|||+ +|+++..+.|..+.+.+...|...+...
T Consensus 102 ~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 143 (153)
T 2l5o_A 102 FGTQVYPTSVLIGK-KGEILKTYVGEPDFGKLYQEIDTAWRNS 143 (153)
T ss_dssp HTCCSSSEEEEECS-SSCCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred cCCCccCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 99999999999997 7999999999999999999999988854
No 111
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=98.44 E-value=1.6e-06 Score=74.18 Aligned_cols=94 Identities=12% Similarity=0.191 Sum_probs=69.3
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccE------EEEEeecCC--hh-HHHHHHh-------------
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNF------IFWQVYDDT--SE-GKKVCTY------------- 132 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~F------V~w~~~~~s--~e-g~~~~~~------------- 132 (342)
-.+|++||+|+.+||..|..+...+ ..+.+-+. .++ .++.++.+. .+ ..++++.
T Consensus 57 ~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 133 (183)
T 3lwa_A 57 FENQVVILNAWGQWCAPCRSESDDL---QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPF 133 (183)
T ss_dssp GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTC
T ss_pred hCCCEEEEEEECCcCHhHHHHHHHH---HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcc
Confidence 4689999999999999999875432 22333333 336 888888766 22 3344433
Q ss_pred --------CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 133 --------YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 133 --------y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
|++..+|+++||++ .|+++.++.|..+++++...|...+.
T Consensus 134 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 134 MTAASLGGVPASVIPTTIVLDK-QHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp GGGGGTTTCCTTCCSEEEEECT-TSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred hHHHHhccCCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 35788999999997 79999999999999999988887765
No 112
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=98.44 E-value=1.1e-06 Score=72.95 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=72.1
Q ss_pred HHHcCCeEEEEEecCCCcchhhh-hhcccCCHHHHHHHh----ccEEEEEeecC-------ChhH---------------
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHML-NRDTWANEAVSQTIS----TNFIFWQVYDD-------TSEG--------------- 126 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f-~rdvl~~~~V~~~i~----~~FV~w~~~~~-------s~eg--------------- 126 (342)
+.-.+|++||+|..+||..|... . +.+.++.+ .++.++.++.+ +.+.
T Consensus 24 ~~~~gk~vlv~f~a~wC~~C~~~~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (158)
T 3eyt_A 24 ADLRGKVIVIEAFQMLCPGCVMHGI------PLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVG 97 (158)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEE
T ss_pred HHhCCCEEEEEEECCcCcchhhhhh------HHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEE
Confidence 33458999999999999999983 3 23334333 36777777753 1111
Q ss_pred -----H----HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 127 -----K----KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 127 -----~----~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
. .++..|++..+|+++|||+ .|+++.++.|..+.+++...|...+..
T Consensus 98 ~d~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 98 VDQPGDGAMPRTMAAYQMRGTPSLLLIDK-AGDLRAHHFGDVSELLLGAEIATLLGE 153 (158)
T ss_dssp EECCCSSSSCHHHHHTTCCSSSEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred EcCccchhhHHHHHHcCCCCCCEEEEECC-CCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 1 4788999999999999997 799999999999999999988888764
No 113
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=5.5e-07 Score=73.71 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=71.6
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCC-----
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLD----- 136 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~----- 136 (342)
-..+|++++ +...++++||+|+++||..|+.+...+ .++.+-... ++.+..+|++. ...++..|++.
T Consensus 13 ~~~~f~~~~--~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~~~~ 85 (137)
T 2dj0_A 13 NDKTIDEEL--ERDKRVTWIVEFFANWSNDCQSFAPIY---ADLSLKYNCTGLNFGKVDVGR--YTDVSTRYKVSTSPLT 85 (137)
T ss_dssp CTTHHHHHH--HHSTTSCEEEEECCTTCSTTTTTHHHH---HHHHHHHCSSSCEEEECCTTT--CHHHHHHTTCCCCSSS
T ss_pred cHhhHHHHH--hcCCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEeCcc--CHHHHHHccCcccCCc
Confidence 356788887 455677999999999999999997543 344444443 78898877764 45688999998
Q ss_pred -CCcEEEEEeCCCCceEEEEeCCCChHHH
Q 019378 137 -SIPVVLVVDPITGQKMRSWCGMVQPESL 164 (342)
Q Consensus 137 -~~P~l~ii~p~tG~~l~~~~G~~~~~~~ 164 (342)
.+|+++++. .|+.+.++.|..+.+.+
T Consensus 86 ~~~Pt~~~~~--~G~~~~~~~G~~~~~~l 112 (137)
T 2dj0_A 86 KQLPTLILFQ--GGKEAMRRPQIDKKGRA 112 (137)
T ss_dssp SCSSEEEEES--SSSEEEEESCBCSSSCB
T ss_pred CCCCEEEEEE--CCEEEEEecCcCchHHH
Confidence 999999994 69999999997765544
No 114
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=98.39 E-value=1e-06 Score=73.47 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=67.6
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcc-------------------------cCCHHHHHHHhc-cEEEEEeecCChhH
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDT-------------------------WANEAVSQTIST-NFIFWQVYDDTSEG 126 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdv-------------------------l~~~~V~~~i~~-~FV~w~~~~~s~eg 126 (342)
.+...+|++||+|+++||..|..+...+ -..+.+.++++. ++-+|.++.+ ..
T Consensus 33 ~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~ 110 (164)
T 2h30_A 33 VYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTD--NG 110 (164)
T ss_dssp GGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEEC--TT
T ss_pred HHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEc--Cc
Confidence 3445789999999999999999875321 001123333332 1211222222 12
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
..++..|++..+|+++|||+ +|+++.++.|..+.++|...|...+.
T Consensus 111 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~~~~ 156 (164)
T 2h30_A 111 GTIAQNLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRNPNA 156 (164)
T ss_dssp CHHHHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred hHHHHHcCCCccceEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45788999999999999997 79999999999999998887777665
No 115
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=98.38 E-value=2.1e-06 Score=77.35 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=86.3
Q ss_pred HhhCCCCcC--cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHH
Q 019378 53 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK 127 (342)
Q Consensus 53 ~~f~pp~~~--~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~ 127 (342)
.+|.+..++ +-..+|++.+ ...+|+++|+|+++||..|+.|...+ ..+.+-+.. ++.+..+|++..+..
T Consensus 6 ~l~~~~~~v~~l~~~~f~~~i---~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~ 79 (244)
T 3q6o_A 6 ALYSPSDPLTLLQADTVRGAV---LGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVKAWRPALYLAALDCAEETNS 79 (244)
T ss_dssp CCSCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTGGGTTTEEEEEEETTSTTTH
T ss_pred CCCCCCCCceeCChhhHHHHH---hhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHHhccCcEEEEEEeCCchhhH
Confidence 456554433 3456777665 35679999999999999999996432 344444554 799999999877888
Q ss_pred HHHHhCCCCCCcEEEEEeCCC----CceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378 128 KVCTYYKLDSIPVVLVVDPIT----GQKMRSWCGMVQPESLLEDLVPFMDGGP 176 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~t----G~~l~~~~G~~~~~~~l~~L~~~l~~~~ 176 (342)
.++..|++..+|++.++++.. |..+ .+.| .+++.|...|...+..+.
T Consensus 80 ~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~ 130 (244)
T 3q6o_A 80 AVCRDFNIPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHH 130 (244)
T ss_dssp HHHHHTTCCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCT
T ss_pred HHHHHcCCCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhcc
Confidence 999999999999999999621 2223 5556 689999999999888653
No 116
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.37 E-value=4e-06 Score=71.79 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=70.9
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCCh---hHHHHHHhCCCC---------------
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS---EGKKVCTYYKLD--------------- 136 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~---eg~~~~~~y~v~--------------- 136 (342)
-.+|++||+|+.+||..|......+ .++.+-+. .++.++.++.+.. ....++..|++.
T Consensus 58 ~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 134 (186)
T 1jfu_A 58 FRGKTLLVNLWATWCVPCRKEMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQD 134 (186)
T ss_dssp GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHH
T ss_pred cCCCEEEEEEEeCCCHhHHHHHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHH
Confidence 3689999999999999999876443 23333333 5777777777643 345677777764
Q ss_pred --------CCcEEEEEeCCCCceEEEEeCCCC--hHHHHHHHHhhhhc
Q 019378 137 --------SIPVVLVVDPITGQKMRSWCGMVQ--PESLLEDLVPFMDG 174 (342)
Q Consensus 137 --------~~P~l~ii~p~tG~~l~~~~G~~~--~~~~l~~L~~~l~~ 174 (342)
.+|+++|||+ +|+++.++.|..+ .+++...|...+..
T Consensus 135 ~~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~~ 181 (186)
T 1jfu_A 135 LKAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASEDALKLIRAATGK 181 (186)
T ss_dssp HHTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred hccccccCCCCEEEEECC-CCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence 8999999997 7999999999764 78888888877753
No 117
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=98.37 E-value=3.9e-06 Score=74.15 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=72.2
Q ss_pred HHHHcCCeE-EEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCC
Q 019378 73 AASVQDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 147 (342)
Q Consensus 73 ~Ak~~~K~L-lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~ 147 (342)
..+..++++ +|+|+++||..|+.+...+ ..+..... .++.+..+|.+. ...++..|++.++|+++|+.
T Consensus 128 ~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~-- 200 (226)
T 1a8l_A 128 AIRNIDQDVRILVFVTPTCPYCPLAVRMA---HKFAIENTKAGKGKILGDMVEAIE--YPEWADQYNVMAVPKIVIQV-- 200 (226)
T ss_dssp HHTTCCSCEEEEEEECSSCTTHHHHHHHH---HHHHHHHHHTTCCCEEEEEEEGGG--CHHHHHHTTCCSSCEEEEEE--
T ss_pred HHHhcCCCcEEEEEeCCCCCccHHHHHHH---HHHHHhcccccCCcEEEEEEEccc--CHHHHHhCCCcccCeEEEEe--
Confidence 344555666 9999999999999996433 34444444 478888887763 45688999999999988875
Q ss_pred CCceEEEEeCCCChHHHHHHHHhhh
Q 019378 148 TGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 148 tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
+|+.+.++.|..+.+.|...|...+
T Consensus 201 ~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 201 NGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCceeEEEcCCCCHHHHHHHHHHhh
Confidence 6888889999999999988887654
No 118
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.7e-06 Score=80.81 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=80.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|++++. ..++++||+|+++||..|+.+...+ ..+.+.+...+.+..++++..+...++..|++..+|++++
T Consensus 24 ~~~f~~~i~---~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~ 97 (298)
T 3ed3_A 24 PKSFDKAIH---NTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMV 97 (298)
T ss_dssp HHHHHHHHT---SSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEE
T ss_pred HHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEE
Confidence 445666663 5689999999999999999997543 4555566666778888888777788999999999999999
Q ss_pred EeCCCCc-----------------eEEEEeCCCChHHHHHHHHhhhh
Q 019378 144 VDPITGQ-----------------KMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 144 i~p~tG~-----------------~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+.+ |+ ....+.|..+.+.++..|...+.
T Consensus 98 ~~~--g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~ 142 (298)
T 3ed3_A 98 FRP--PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR 142 (298)
T ss_dssp EEC--CCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC
T ss_pred EEC--CceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc
Confidence 985 44 35677899999999887766654
No 119
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=98.35 E-value=3.8e-06 Score=69.98 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=71.1
Q ss_pred cCCeEEEEEecCCCcc-hhhhhhcccCCHHHHHHHh-----ccEEEEEeecCC----h----------------------
Q 019378 77 QDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS-----TNFIFWQVYDDT----S---------------------- 124 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~-~~~f~rdvl~~~~V~~~i~-----~~FV~w~~~~~s----~---------------------- 124 (342)
.+||+||+|..+||.+ |......+ .++.+-+. .++.++.++++. +
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d 98 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEKM---IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTRE 98 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHHH---HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHHH---HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 5899999999999998 98764321 12333333 267777766653 1
Q ss_pred hHHHHHHhCCCCCCc---------------EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 125 EGKKVCTYYKLDSIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 125 eg~~~~~~y~v~~~P---------------~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
....+++.|++...| +++|||+ .|+++.++.|..+++++.+.|...+..+
T Consensus 99 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 163 (164)
T 2ggt_A 99 EVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY 163 (164)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 123477889998899 8999997 7999999999999999999998887653
No 120
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=2.7e-06 Score=68.20 Aligned_cols=98 Identities=7% Similarity=0.078 Sum_probs=73.7
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l 141 (342)
-..+|++++. + .+||+|+++||..|+.+...+ ..+.+.+.+ ++.+..+|++. ...++..|++..+|++
T Consensus 13 ~~~~f~~~~~-----~-~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~ 81 (126)
T 1x5e_A 13 TDENWRELLE-----G-DWMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVTE--QPGLSGRFIINALPTI 81 (126)
T ss_dssp CTTTHHHHTS-----S-EEEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred cHHHHHHHhC-----C-CEEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECcC--CHHHHHHcCCcccCEE
Confidence 3456766542 2 389999999999999997543 234444443 78888888764 3468899999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+++. +|+ +.++.|..+.+.|...|...+..
T Consensus 82 ~~~~--~G~-~~~~~G~~~~~~l~~~l~~~~~~ 111 (126)
T 1x5e_A 82 YHCK--DGE-FRRYQGPRTKKDFINFISDKEWK 111 (126)
T ss_dssp EEEE--TTE-EEECCSCCCHHHHHHHHHTCGGG
T ss_pred EEEe--CCe-EEEeecCCCHHHHHHHHHHHhhc
Confidence 9993 688 57888999999998888777653
No 121
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=98.35 E-value=2.7e-06 Score=69.31 Aligned_cols=91 Identities=10% Similarity=0.162 Sum_probs=67.0
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChh-H-HHH--------------------HHhC
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE-G-KKV--------------------CTYY 133 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~e-g-~~~--------------------~~~y 133 (342)
.+|++||+|.++||..|..+...+-..+.+.+.+. .++.++.++.+... . ..+ +..|
T Consensus 26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (142)
T 3ewl_A 26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY 105 (142)
T ss_dssp CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence 68999999999999999998666555566666554 46888888876432 2 222 3389
Q ss_pred CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 134 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 134 ~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
++..+|+++|||+ .|+++. +.++.+++.+.|...
T Consensus 106 ~v~~~P~~~lid~-~G~i~~---~~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 106 DIRATPTIYLLDG-RKRVIL---KDTSMEQLIDYLATQ 139 (142)
T ss_dssp CCCSSSEEEEECT-TCBEEE---CSCCHHHHHHHHHC-
T ss_pred CCCCCCeEEEECC-CCCEEe---cCCCHHHHHHHHHHH
Confidence 9999999999997 688765 567788776655543
No 122
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=98.34 E-value=2.2e-06 Score=71.51 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=68.7
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCC-----------------hhHHHHHHhCCCCCC
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDT-----------------SEGKKVCTYYKLDSI 138 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s-----------------~eg~~~~~~y~v~~~ 138 (342)
.+|++||+|+++||..|..+...+ ..+.+-+. .++.++.++.+. .....++..|++..+
T Consensus 40 ~gk~vll~F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 116 (158)
T 3hdc_A 40 RGKIVLVNFWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRL 116 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSS
T ss_pred CCCEEEEEEECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCc
Confidence 689999999999999999875432 22222232 578888888875 123468899999999
Q ss_pred cEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhh
Q 019378 139 PVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPF 171 (342)
Q Consensus 139 P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~ 171 (342)
|+++|||+ +|+++.++.|.. +..++++.+..-
T Consensus 117 P~~~lid~-~G~i~~~~~G~~~~~~~~~~~~~~~~ 150 (158)
T 3hdc_A 117 PDTFIVDR-KGIIRQRVTGGIEWDAPKVVSYLKSL 150 (158)
T ss_dssp SEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTT
T ss_pred ceEEEEcC-CCCEEEEEeCCCccchHHHHHHHHhh
Confidence 99999997 799999999975 566777665543
No 123
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=98.33 E-value=3e-06 Score=70.55 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=68.9
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhHH---------------------HHHHhCC
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGK---------------------KVCTYYK 134 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg~---------------------~~~~~y~ 134 (342)
.+|++||+|..+||..|......+ ..+.+-+. .++.++.++.+..... .++..|+
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLAL---RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN 110 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred CCCEEEEEEEcCCChhhHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence 579999999999999999865332 12222232 3588888888765431 2778999
Q ss_pred CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
+..+|+++|||+ .|+++.++.|..+.++.+..+.+-
T Consensus 111 v~~~P~~~lid~-~G~i~~~~~g~~~~e~~~~~~~~~ 146 (152)
T 2lrt_A 111 VTNLPSVFLVNR-NNELSARGENIKDLDEAIKKLLEG 146 (152)
T ss_dssp CCSCSEEEEEET-TTEEEEETTTCSCHHHHHHHHHGG
T ss_pred cccCceEEEECC-CCeEEEecCCHHHHHHHHHHHHhc
Confidence 999999999997 799999999988888877665543
No 124
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.30 E-value=4e-06 Score=74.53 Aligned_cols=100 Identities=8% Similarity=0.195 Sum_probs=77.3
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecCChhHHHHHHhCCCCCCc
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIP 139 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~s~eg~~~~~~y~v~~~P 139 (342)
-..+|++++ .++|++||+|+++||..|+.+...+ ..+.+.+... +.+..+|.+. ...+++.|++.++|
T Consensus 21 ~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~P 91 (241)
T 3idv_A 21 NDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILKDKDPPIPVAKIDATS--ASVLASRFDVSGYP 91 (241)
T ss_dssp CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSS
T ss_pred cccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhhcCCceEEEEEeccC--CHHHHHhcCCCcCC
Confidence 345666655 5689999999999999999996432 3344444443 8888888764 45789999999999
Q ss_pred EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+++++. .|+.+ ...|..+.+.+...+...+..
T Consensus 92 t~~~~~--~g~~~-~~~g~~~~~~l~~~i~~~~~~ 123 (241)
T 3idv_A 92 TIKILK--KGQAV-DYEGSRTQEEIVAKVREVSQP 123 (241)
T ss_dssp EEEEEE--TTEEE-ECCSCSCHHHHHHHHHHHHST
T ss_pred EEEEEc--CCCcc-cccCcccHHHHHHHHhhccCc
Confidence 999997 47776 588999999999888887764
No 125
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.28 E-value=1.7e-06 Score=69.96 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=69.3
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE-E
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM-R 153 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l-~ 153 (342)
.+|++||+|+++||..|+.+...+ ..+.+.+. .++++..+|.+... .++..|++..+|+++++++ .|.+. .
T Consensus 24 ~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~-g~~~~~~ 97 (133)
T 2dj3_A 24 PKKDVLIEFYAPWCGHCKQLEPIY---TSLGKKYKGQKDLVIAKMDATAND--ITNDQYKVEGFPTIYFAPS-GDKKNPI 97 (133)
T ss_dssp TTSEEEEEECCTTCSHHHHHHHHH---HHHHHHHTTSSSEEEEEECTTTSC--CCCSSCCCSSSSEEEEECT-TCTTSCE
T ss_pred CCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCCEEEEEecCCcCH--HHHhhcCCCcCCEEEEEeC-CCcccce
Confidence 589999999999999999997542 34555554 46999988876532 4567899999999999985 33322 2
Q ss_pred EEe-CCCChHHHHHHHHhhhhcC
Q 019378 154 SWC-GMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 154 ~~~-G~~~~~~~l~~L~~~l~~~ 175 (342)
.+. |..+++.|...|...+...
T Consensus 98 ~~~gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 98 KFEGGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp ECCSSCCSTTHHHHHHHHHSSSC
T ss_pred EecCCCcCHHHHHHHHHHhcccc
Confidence 455 5689999988888777643
No 126
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=98.28 E-value=5.9e-06 Score=69.19 Aligned_cols=88 Identities=10% Similarity=0.088 Sum_probs=67.9
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecC-------------------ChhH--------
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDD-------------------TSEG-------- 126 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~-------------------s~eg-------- 126 (342)
-.+|++||+|.++||..|..+. +.+.++.+. ++.++.++.+ +.+.
T Consensus 35 ~~gk~~lv~F~~~~C~~C~~~~------~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (165)
T 3ha9_A 35 VGGDVVILWFMAAWCPSCVYMA------DLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANY 108 (165)
T ss_dssp CCSSEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHH
T ss_pred hCCCEEEEEEECCCCcchhhhH------HHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHc
Confidence 3789999999999999999975 445555543 6777777776 2211
Q ss_pred -----------HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCC-ChHHHHHHHHhhh
Q 019378 127 -----------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV-QPESLLEDLVPFM 172 (342)
Q Consensus 127 -----------~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~-~~~~~l~~L~~~l 172 (342)
..++..|++..+|+++|||+ +|+++. .|.. +.+.+...|...+
T Consensus 109 ~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~-~G~i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 109 GDPSWIMVMDDGSLVEKFNVRSIDYIVIMDK-SSNVLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp SCTTSEEEECCSHHHHHTTCCSSSEEEEEET-TCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred CCCCeeEEeChHHHHHHhCCCCceEEEEEcC-CCcEEE--eCCCCCHHHHHHHHHHHh
Confidence 26778899999999999997 788887 7888 8888888777654
No 127
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=98.27 E-value=6.3e-06 Score=82.93 Aligned_cols=118 Identities=10% Similarity=0.064 Sum_probs=91.4
Q ss_pred HhhCCCCcC--cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHH
Q 019378 53 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK 127 (342)
Q Consensus 53 ~~f~pp~~~--~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~ 127 (342)
.+|.+..++ +-..+|++++. +.+|++||+|+++||..|+.+...+ +.+.+-+.. .+.+..+|.+..+..
T Consensus 6 ~Ly~~~~~V~~Lt~~~f~~~v~---~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~~ 79 (519)
T 3t58_A 6 VLYSSSDPLTLLDADSVRPTVL---GSSSAWAVEFFASWCGHAIAFAPTW---KELANDVKDWRPALNLAVLDCAEETNS 79 (519)
T ss_dssp CSCCTTSSSEEECTTTHHHHHS---SCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHGGGTTTEEEEEEETTSGGGH
T ss_pred ccCCCCCCcEECChHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhhCcCCcEEEEEEECCccccH
Confidence 456554443 33567776653 4579999999999999999997543 455555555 799999999887888
Q ss_pred HHHHhCCCCCCcEEEEEeCC--CCceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378 128 KVCTYYKLDSIPVVLVVDPI--TGQKMRSWCGMVQPESLLEDLVPFMDGGP 176 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~--tG~~l~~~~G~~~~~~~l~~L~~~l~~~~ 176 (342)
.++..|+|.++|+++++++. .|+.+....|..+++.+.+.|...+..+.
T Consensus 80 ~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~ 130 (519)
T 3t58_A 80 AVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130 (519)
T ss_dssp HHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999952 34555666777999999999999987653
No 128
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=98.24 E-value=3.1e-06 Score=69.18 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=61.6
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH----------------------HHHHHhC
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG----------------------KKVCTYY 133 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg----------------------~~~~~~y 133 (342)
.+|++||+|+++||..|......+-.++.+.+.+. .++.++.++.+.... ..++..|
T Consensus 30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 109 (142)
T 3eur_A 30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY 109 (142)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence 47999999999999999998766555555655553 578888888776422 1257789
Q ss_pred CCCCCcEEEEEeCCCCceEEEEeC
Q 019378 134 KLDSIPVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 134 ~v~~~P~l~ii~p~tG~~l~~~~G 157 (342)
++..+|+++|||+ .|.++.+..|
T Consensus 110 ~v~~~P~~~lid~-~G~i~~~~~~ 132 (142)
T 3eur_A 110 DLRAIPTLYLLDK-NKTVLLKDAT 132 (142)
T ss_dssp CCTTCSEEEEECT-TCBEEEEEEC
T ss_pred CCCcCCeEEEECC-CCcEEecCCC
Confidence 9999999999997 7998877655
No 129
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=98.22 E-value=1.8e-05 Score=66.33 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=71.5
Q ss_pred cCCeEEEEEecCCCcc-hhhhhhcccCCHHHHHHHh-----ccEEEEEeecCC----hh---------------------
Q 019378 77 QDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS-----TNFIFWQVYDDT----SE--------------------- 125 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~-~~~f~rdvl~~~~V~~~i~-----~~FV~w~~~~~s----~e--------------------- 125 (342)
.+||+||+|..+||.+ |......+ ..+.+-+. .++.++.++++. ++
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 101 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEKL---VQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTK 101 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHHH---HHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 5899999999999998 98764321 12333332 367777777652 22
Q ss_pred -HHHHHHhCCCCCCc---------------EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 126 -GKKVCTYYKLDSIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 126 -g~~~~~~y~v~~~P---------------~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
...+++.|++...| +++|||+ .|.++.++.|..+++++...|...+...
T Consensus 102 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 166 (171)
T 2rli_A 102 QVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP-DGLFTDYYGRSRSAEQISDSVRRHMAAF 166 (171)
T ss_dssp HHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT-TSCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 23577889998888 8999997 7999999999999999999998888643
No 130
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=98.22 E-value=3.5e-06 Score=62.26 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=62.0
Q ss_pred EEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCC
Q 019378 81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 160 (342)
Q Consensus 81 LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~ 160 (342)
.+|+|+++||..|+.+...+ +.+.+-...++.+..++++.. ..++..|++.++|++++ +|+. ++.|..+
T Consensus 4 ~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~----~G~~--~~~G~~~ 72 (85)
T 1nho_A 4 NIEVFTSPTCPYCPMAIEVV---DEAKKEFGDKIDVEKIDIMVD--REKAIEYGLMAVPAIAI----NGVV--RFVGAPS 72 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHH---HHHHHHHCSSCCEEEECTTTC--GGGGGGTCSSCSSEEEE----TTTE--EEECSSC
T ss_pred EEEEEECCCCcchHHHHHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHhCCceeeCEEEE----CCEE--EEccCCC
Confidence 47899999999999996532 334444445777887777643 35788999999999998 5776 7889889
Q ss_pred hHHHHHHHHhhh
Q 019378 161 PESLLEDLVPFM 172 (342)
Q Consensus 161 ~~~~l~~L~~~l 172 (342)
.++|.+.|...+
T Consensus 73 ~~~l~~~l~~~l 84 (85)
T 1nho_A 73 REELFEAINDEM 84 (85)
T ss_dssp CHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999988877654
No 131
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=8.6e-06 Score=67.15 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=66.9
Q ss_pred cCCeEEEEEecCCCcc--hhhhhhcccCCHHHHHHH-h-ccEEEEEeecCChh-----------------------HHHH
Q 019378 77 QDKWLLVNLQSTKEFS--SHMLNRDTWANEAVSQTI-S-TNFIFWQVYDDTSE-----------------------GKKV 129 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~--~~~f~rdvl~~~~V~~~i-~-~~FV~w~~~~~s~e-----------------------g~~~ 129 (342)
.+|++||+|..+||.+ |......+- .+.+-+ . .++.++.++.+... ...+
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l~---~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 108 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSELR---EIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV 108 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHHH---HHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHH---HHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence 6899999999999999 998753221 122222 2 34888888887653 2367
Q ss_pred HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+..|++..+|+++|||+ .|+++.+.. +++++...|...+.
T Consensus 109 ~~~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 109 AKQYSIYKIPANILLSS-DGKILAKNL---RGEELKKKIENIVE 148 (150)
T ss_dssp HHHTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHHH
T ss_pred HHHcCCCccCeEEEECC-CCEEEEccC---CHHHHHHHHHHHHh
Confidence 88999999999999997 789887663 78888777777664
No 132
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=98.19 E-value=9.9e-06 Score=66.20 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=58.8
Q ss_pred HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh----------------------HHHHH
Q 019378 75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKVC 130 (342)
Q Consensus 75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e----------------------g~~~~ 130 (342)
.-.+|++||+|+.+||..|..+...+ ..+.+-+. .++.++.++++... ...++
T Consensus 25 ~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 101 (144)
T 1i5g_A 25 SLAGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLT 101 (144)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHH
T ss_pred HcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHH
Confidence 34689999999999999999886443 23444444 47888888877532 45788
Q ss_pred HhCCCCCCcEEEEEeCCCCceEEEE
Q 019378 131 TYYKLDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 131 ~~y~v~~~P~l~ii~p~tG~~l~~~ 155 (342)
+.|++..+|+++||++.+|+++.+.
T Consensus 102 ~~~~v~~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 102 TGFDVKSIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp HHTTCCSSSEEEEEETTTCCEEESC
T ss_pred HHcCCCCCCEEEEEECCCCcEEecc
Confidence 9999999999999994478877543
No 133
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=98.18 E-value=4.5e-06 Score=69.51 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=61.6
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCC--CcchhhhhhcccCCHHHHHHHh--ccEE--EEEeecCChhHHHHHHhCCC
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIS--TNFI--FWQVYDDTSEGKKVCTYYKL 135 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~--~~~~~~f~rdvl~~~~V~~~i~--~~FV--~w~~~~~s~eg~~~~~~y~v 135 (342)
+-..+|++.+. ..+.++|+|..+| |.+|+.+. +.+.++.+ .++. ++.+|++ +...++..|+|
T Consensus 22 l~~~~f~~~i~----~~~~~vv~f~~~~~~C~~C~~l~------P~l~~la~~~~~v~~~~~~Vd~d--~~~~la~~~~V 89 (142)
T 2es7_A 22 VEASTVDDWIK----RVGDGVILLSSDPRRTPEVSDNP------VMIAELLREFPQFDWQVAVADLE--QSEAIGDRFNV 89 (142)
T ss_dssp CCCC------------CCSEEEEECCCSCC----CCHH------HHHHHHHHTCTTSCCEEEEECHH--HHHHHHHTTTC
T ss_pred cccccHHHHHH----hCCCEEEEEECCCCCCccHHHHH------HHHHHHHHHhcccceeEEEEECC--CCHHHHHhcCC
Confidence 44577888764 3445777888776 89999885 33344333 3566 7776664 45678999999
Q ss_pred CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.++|+++++ ++|+.+.++.|..+.++|.+.|...+..
T Consensus 90 ~~iPT~~~f--k~G~~v~~~~G~~~~~~l~~~i~~~l~~ 126 (142)
T 2es7_A 90 RRFPATLVF--TDGKLRGALSGIHPWAELLTLMRSIVDT 126 (142)
T ss_dssp CSSSEEEEE--SCC----CEESCCCHHHHHHHHHHHHC-
T ss_pred CcCCeEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 999999999 3799999999999999998888888764
No 134
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=98.18 E-value=7.1e-06 Score=69.42 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=59.9
Q ss_pred HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhH----------------------HH
Q 019378 73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEG----------------------KK 128 (342)
Q Consensus 73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg----------------------~~ 128 (342)
.+.-.+|++||+|..+||..|..+...+ ..+.+-+.+ ++.++.++++.... ..
T Consensus 43 l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (165)
T 3s9f_A 43 MDSLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEA 119 (165)
T ss_dssp SGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHH
T ss_pred HHHcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHH
Confidence 3444689999999999999999986443 233333443 67777777766533 67
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~ 155 (342)
+++.|++..+|+++||++.+|+++.+.
T Consensus 120 l~~~~~v~~~Pt~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 120 LTKKYSVESIPTLIGLNADTGDTVTTR 146 (165)
T ss_dssp HHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred HHHHcCCCCCCEEEEEeCCCCEEEecc
Confidence 889999999999999998448887553
No 135
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=98.17 E-value=1.7e-06 Score=69.59 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=61.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecC-------CCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCC-----hhHHHH
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQST-------KEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT-----SEGKKV 129 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~-------~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s-----~eg~~~ 129 (342)
.+|.+++..+ .+|+++|+|+++ ||.+|..+.. .+.++.+ .++.+..++++. .+...+
T Consensus 13 ~~~~~~~~~~--~~~~v~v~F~a~~~~~~~~wC~~C~~~~p------~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~ 84 (123)
T 1wou_A 13 EEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAEP------VVREGLKHISEGCVFIYCQVGEKPYWKDPNNDF 84 (123)
T ss_dssp HHHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHHH------HHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHH
T ss_pred HHHHHHHHHh--CCCEEEEEEEccCCCCCCCcCHHHHHhhH------HHHHHHHHcCCCcEEEEEECCCchhhhchhHHH
Confidence 3444544432 489999999999 9999999963 3444443 479999999853 223457
Q ss_pred HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378 130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
+..|++.++|++++++. |..+....| .+++.+..
T Consensus 85 ~~~~~i~~~Pt~~~~~~--~~~~~g~~~-~~~~~l~~ 118 (123)
T 1wou_A 85 RKNLKVTAVPTLLKYGT--PQKLVESEC-LQANLVEM 118 (123)
T ss_dssp HHHHCCCSSSEEEETTS--SCEEEGGGG-GCHHHHHH
T ss_pred HHHCCCCeeCEEEEEcC--CceEecccc-CCHHHHHH
Confidence 88899999999999985 443322222 34555443
No 136
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=98.17 E-value=1e-05 Score=66.34 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=59.1
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh----------------------HHHH
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKV 129 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e----------------------g~~~ 129 (342)
+.-.+|++||+|+.+||..|..+...+ ..+.+-+. .++.++.++++... ...+
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (146)
T 1o8x_A 24 KSLAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKL 100 (146)
T ss_dssp GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHH
T ss_pred HHhCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHH
Confidence 334689999999999999999886443 23444444 47777777777532 4578
Q ss_pred HHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378 130 CTYYKLDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 130 ~~~y~v~~~P~l~ii~p~tG~~l~~~ 155 (342)
++.|++..+|+++||++.+|+++.+.
T Consensus 101 ~~~~~v~~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 101 SKHFNVESIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp HHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred HHHhCCCCCCEEEEEECCCCeEEEec
Confidence 89999999999999994478877553
No 137
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=98.16 E-value=5e-06 Score=61.44 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=62.2
Q ss_pred CeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378 79 KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 79 K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~ 158 (342)
.+.+|+|+++||..|+.+...+ .++.+-...++.+..+|.+.. ..++..|++.++|++++ +|+. ++.|.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~----~G~~--~~~G~ 71 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVV---EEVANEMPDAVEVEYINVMEN--PQKAMEYGIMAVPTIVI----NGDV--EFIGA 71 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHH---HHHHHHCSSSEEEEEEESSSS--CCTTTSTTTCCSSEEEE----TTEE--ECCSS
T ss_pred ceEEEEEeCCCCCchHHHHHHH---HHHHHHcCCceEEEEEECCCC--HHHHHHCCCcccCEEEE----CCEE--eeecC
Confidence 4679999999999999996432 233333344788888887653 25778899999999998 5776 78898
Q ss_pred CChHHHHHHHHhh
Q 019378 159 VQPESLLEDLVPF 171 (342)
Q Consensus 159 ~~~~~~l~~L~~~ 171 (342)
.+++++...|...
T Consensus 72 ~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 72 PTKEALVEAIKKR 84 (85)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 8999988877654
No 138
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=98.16 E-value=4.3e-06 Score=67.51 Aligned_cols=90 Identities=14% Similarity=0.289 Sum_probs=66.0
Q ss_pred hCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHh
Q 019378 55 YRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTY 132 (342)
Q Consensus 55 f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~ 132 (342)
||....+ -..+|.+++..+ ..+++++|+|+.+||.+|+.|. +.+.++.++ +..|+.+|++.. +..
T Consensus 2 ~G~v~~i-t~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~------p~l~~la~~~~~v~f~kvd~d~~-----~~~ 68 (118)
T 3evi_A 2 FGELREI-SGNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVN------QHLSLLARKFPETKFVKAIVNSC-----IQH 68 (118)
T ss_dssp CCSCEEC-CGGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHH------HHHHHHHHHCTTSEEEEEEGGGT-----STT
T ss_pred CcceEEe-CHHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHCCCCEEEEEEhHHh-----HHH
Confidence 4444443 455676666432 2245999999999999999996 444444443 467788888753 589
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCC
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMV 159 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~ 159 (342)
|++.++|+++++. +|+.+.++.|..
T Consensus 69 ~~v~~~PT~~~fk--~G~~v~~~~G~~ 93 (118)
T 3evi_A 69 YHDNCLPTIFVYK--NGQIEAKFIGII 93 (118)
T ss_dssp CCGGGCSEEEEEE--TTEEEEEEESTT
T ss_pred CCCCCCCEEEEEE--CCEEEEEEeChh
Confidence 9999999999997 699999999964
No 139
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=98.15 E-value=2.3e-06 Score=76.45 Aligned_cols=86 Identities=13% Similarity=0.206 Sum_probs=64.9
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
-..+|.+++..+ ..+++++|+|+.+||..|..+.. .+..+... ++.|..++++ ...++..|++..+|+
T Consensus 106 ~~~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p------~l~~la~~~~~v~f~~vd~~---~~~l~~~~~i~~~PT 175 (217)
T 2trc_P 106 TGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNS------SLECLAAEYPMVKFCKIRAS---NTGAGDRFSSDVLPT 175 (217)
T ss_dssp SHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHTTCTTSEEEEEEHH---HHTCSTTSCGGGCSE
T ss_pred CHHHHHHHHHhc-CCCcEEEEEEECCCCccHHHHHH------HHHHHHHHCCCeEEEEEECC---cHHHHHHCCCCCCCE
Confidence 345666665433 24599999999999999999963 34444443 5788888876 345788999999999
Q ss_pred EEEEeCCCCceEEEEeCCCC
Q 019378 141 VLVVDPITGQKMRSWCGMVQ 160 (342)
Q Consensus 141 l~ii~p~tG~~l~~~~G~~~ 160 (342)
++|+. +|+++.++.|..+
T Consensus 176 l~~~~--~G~~v~~~~G~~~ 193 (217)
T 2trc_P 176 LLVYK--GGELISNFISVAE 193 (217)
T ss_dssp EEEEE--TTEEEEEETTGGG
T ss_pred EEEEE--CCEEEEEEeCCcc
Confidence 99996 7999999998655
No 140
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=98.14 E-value=1.2e-05 Score=65.58 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=58.7
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh----------------------HHHH
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKV 129 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e----------------------g~~~ 129 (342)
+.-.+|++||+|+++||..|..+...+ ..+.+-+. .++.++.++++... ...+
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (144)
T 1o73_A 24 GSLVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSEL 100 (144)
T ss_dssp GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHhCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHH
Confidence 344689999999999999999886432 22333333 47777777777632 4568
Q ss_pred HHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378 130 CTYYKLDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 130 ~~~y~v~~~P~l~ii~p~tG~~l~~~ 155 (342)
++.|++..+|+++||++.+|+++.+.
T Consensus 101 ~~~~~v~~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 101 GKTFGVESIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHHHTCCSSSEEEEEETTTCCEEESC
T ss_pred HHHcCCCCCCEEEEEECCCCeEEecc
Confidence 89999999999999994478877554
No 141
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=98.12 E-value=1.2e-05 Score=77.05 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=73.8
Q ss_pred HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCC------hh-------------------HH
Q 019378 74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDT------SE-------------------GK 127 (342)
Q Consensus 74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s------~e-------------------g~ 127 (342)
+.-.+|++||+|+.+||..|..+...+ .++.+-+. .++.++.++.+. .+ ..
T Consensus 78 sdl~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~ 154 (352)
T 2hyx_A 78 KSLRGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNY 154 (352)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTS
T ss_pred HHhCCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcH
Confidence 334689999999999999999875432 12333333 368888887642 11 13
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.+++.|++..+|+++|||+ +|+++.++.|..+.+++...|...+..
T Consensus 155 ~l~~~ygV~~~Pt~~lID~-~G~Iv~~~~G~~~~~~l~~~I~~lL~e 200 (352)
T 2hyx_A 155 ATWTNYRNRYWPAEYLIDA-TGTVRHIKFGEGDYNVTETLVRQLLND 200 (352)
T ss_dssp HHHHHTTCCEESEEEEECT-TSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEeC-CCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 5677899999999999997 799999999999999998888888764
No 142
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=98.12 E-value=1.9e-05 Score=63.20 Aligned_cols=87 Identities=10% Similarity=0.086 Sum_probs=65.6
Q ss_pred HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH--HHHHHhCCCCC-CcEEEEEeCC
Q 019378 72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--KKVCTYYKLDS-IPVVLVVDPI 147 (342)
Q Consensus 72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg--~~~~~~y~v~~-~P~l~ii~p~ 147 (342)
....+++++++|++|++||..|.++. +.+.++.+ .+.-++.+|++.... ..++..|+|.+ .|+++++.
T Consensus 18 ~~ii~~~~~vvi~khatwCgpc~~~~------~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k-- 89 (112)
T 3iv4_A 18 EQVIEENKYVFVLKHSETCPISANAY------DQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFV-- 89 (112)
T ss_dssp HHHHHHCSEEEEEEECTTCHHHHHHH------HHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEE--
T ss_pred HHHHhcCCCEEEEEECCcCHhHHHHH------HHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEE--
Confidence 33444599999999999999999985 34444543 456677777765332 56899999995 99999996
Q ss_pred CCceEEE-EeCCCChHHHHH
Q 019378 148 TGQKMRS-WCGMVQPESLLE 166 (342)
Q Consensus 148 tG~~l~~-~~G~~~~~~~l~ 166 (342)
+|+.++. -.|.++.+.+..
T Consensus 90 ~G~~v~~~SH~~I~~~~l~~ 109 (112)
T 3iv4_A 90 NGEMVWNRDHGDINVSSLAQ 109 (112)
T ss_dssp TTEEEEEEEGGGCSHHHHHH
T ss_pred CCEEEEEeeccccCHHHHHH
Confidence 7999976 457899987654
No 143
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=98.11 E-value=1.7e-05 Score=76.32 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=78.8
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH------hccEEEEEeecCChhHHHHHHhCCCC
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI------STNFIFWQVYDDTSEGKKVCTYYKLD 136 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i------~~~FV~w~~~~~s~eg~~~~~~y~v~ 136 (342)
-..+|++++ ..++++||+|+++||..|+.+... | ..+.+.+ ..++++..+|.+.. ..++..|+|.
T Consensus 11 ~~~~f~~~~----~~~~~vlV~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~ 81 (382)
T 2r2j_A 11 DTENIDEIL----NNADVALVNFYADWCRFSQMLHPI-F--EEASDVIKEEFPNENQVVFARVDCDQH--SDIAQRYRIS 81 (382)
T ss_dssp CTTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTCC---CCEEEEEEETTTC--HHHHHHTTCC
T ss_pred CHHHHHHHH----hcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHHhhcCCCCceEEEEEECCcc--HHHHHhcCCC
Confidence 346777765 357999999999999999999643 2 3455555 33588888887653 5689999999
Q ss_pred CCcEEEEEeCCCCceEE-EEeCCCChHHHHHHHHhhhhc
Q 019378 137 SIPVVLVVDPITGQKMR-SWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 137 ~~P~l~ii~p~tG~~l~-~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+||++.++. .|+.+. .+.|..+++.+++.|...+..
T Consensus 82 ~~Pt~~~f~--~G~~~~~~~~G~~~~~~l~~~i~~~~~~ 118 (382)
T 2r2j_A 82 KYPTLKLFR--NGMMMKREYRGQRSVKALADYIRQQKSD 118 (382)
T ss_dssp EESEEEEEE--TTEEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred cCCEEEEEe--CCcEeeeeecCcchHHHHHHHHHHhccC
Confidence 999999885 688776 488999999999988877753
No 144
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.08 E-value=1.9e-05 Score=78.51 Aligned_cols=101 Identities=10% Similarity=0.169 Sum_probs=81.3
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
+-..+|++++ +.++++||+|+++||..|+.+... | ..+.+.+.. ++.+..+|.+.. ..+++.|++.+||+
T Consensus 19 l~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt 89 (504)
T 2b5e_A 19 LATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPE-Y--VKAAETLVEKNITLAQIDCTEN--QDLCMEHNIPGFPS 89 (504)
T ss_dssp CCTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTTCEEEEEETTTC--HHHHHHTTCCSSSE
T ss_pred CCHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHH-H--HHHHHHhccCCeEEEEEECCCC--HHHHHhcCCCcCCE
Confidence 3467788876 468999999999999999999654 2 455556665 589999887654 56999999999999
Q ss_pred EEEEeCCCCce--EEEEeCCCChHHHHHHHHhhhh
Q 019378 141 VLVVDPITGQK--MRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 141 l~ii~p~tG~~--l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+.++. .|+. +....|..+.+.+...|...+.
T Consensus 90 ~~~~~--~g~~~~~~~~~G~~~~~~l~~~l~~~~~ 122 (504)
T 2b5e_A 90 LKIFK--NSDVNNSIDYEGPRTAEAIVQFMIKQSQ 122 (504)
T ss_dssp EEEEE--TTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred EEEEe--CCccccceeecCCCCHHHHHHHHHHhcC
Confidence 99997 4776 7888999999999888877664
No 145
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=98.06 E-value=4e-06 Score=76.39 Aligned_cols=99 Identities=13% Similarity=0.207 Sum_probs=70.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
.+|.+++..+ ..++++||+|+.+||..|..+.. .+..+... ++.|+.++++. ..++..|++..+|+++
T Consensus 121 ~~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~p------~l~~La~~~~~v~f~kVd~d~---~~l~~~~~I~~~PTll 190 (245)
T 1a0r_P 121 EQFLETIEKE-QKITTIVVHIYEDGIKGCDALNS------SLICLAAEYPMVKFCKIKASN---TGAGDRFSSDVLPTLL 190 (245)
T ss_dssp HHHHHHHHSS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHHHCTTSEEEEEEHHH---HCCTTSSCTTTCSEEE
T ss_pred HHHHHHHHHh-cCCCEEEEEEECCCChHHHHHHH------HHHHHHHHCCCCEEEEEeCCc---HHHHHHCCCCCCCEEE
Confidence 4555555432 35899999999999999999964 33444432 47788877754 4477899999999999
Q ss_pred EEeCCCCceEEEEeCCCCh---HHHHHHHHhhhhcC
Q 019378 143 VVDPITGQKMRSWCGMVQP---ESLLEDLVPFMDGG 175 (342)
Q Consensus 143 ii~p~tG~~l~~~~G~~~~---~~~l~~L~~~l~~~ 175 (342)
|+. .|+++.++.|..+. +-.+..|..+|..+
T Consensus 191 ~~~--~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 191 VYK--GGELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp EEE--TTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred EEE--CCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 886 69999999986431 22344566666655
No 146
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.05 E-value=3e-05 Score=68.75 Aligned_cols=99 Identities=10% Similarity=0.179 Sum_probs=74.0
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIP 139 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P 139 (342)
-..+|++++ ..+++++|+|+++||..|+.+...+ ..+...+.. ++.+..+|.+. ...++..|++.++|
T Consensus 136 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~P 206 (241)
T 3idv_A 136 TKENFDEVV----NDADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDATA--ETDLAKRFDVSGYP 206 (241)
T ss_dssp CTTTHHHHH----HHCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSS
T ss_pred cHHHHHHhh----ccCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECCC--CHHHHHHcCCcccC
Confidence 356676665 4578999999999999999985332 223333333 27788777764 34689999999999
Q ss_pred EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+++++. .|+.+. ..|..+.+.|++.|...+.
T Consensus 207 t~~~~~--~g~~~~-~~g~~~~~~l~~~l~~~~~ 237 (241)
T 3idv_A 207 TLKIFR--KGRPYD-YNGPREKYGIVDYMIEQSG 237 (241)
T ss_dssp EEEEEE--TTEEEE-CCSCCSHHHHHHHHHHHTT
T ss_pred EEEEEE--CCeEEE-ecCCCCHHHHHHHHHhhhC
Confidence 999997 477765 7899999999888776654
No 147
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.04 E-value=2.6e-05 Score=65.28 Aligned_cols=93 Identities=12% Similarity=0.168 Sum_probs=65.6
Q ss_pred cCCe-EEEEEe-cCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCChhH-------------------HHHHHhCC
Q 019378 77 QDKW-LLVNLQ-STKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEG-------------------KKVCTYYK 134 (342)
Q Consensus 77 ~~K~-LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~eg-------------------~~~~~~y~ 134 (342)
.+|+ ++|+|. ++||..|......+ .++.+-+ ..++.++.++.++.+. ..++..|+
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 103 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTREASAF---RDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYG 103 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHHHHHHH---HHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTT
T ss_pred cCCCCEEEEEEcCCCCCchHHHHHHH---HHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcC
Confidence 4676 999999 99999999875432 1222222 3468888888876542 35677899
Q ss_pred CCC----CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 135 LDS----IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 135 v~~----~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+.. +|+++|||+ +|+++..+.|.......++.+...++
T Consensus 104 v~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~il~~l~ 145 (161)
T 3drn_A 104 AKGFILPARITFVIDK-KGIIRHIYNSQMNPANHVNEALKALK 145 (161)
T ss_dssp CCCSSSCCCEEEEECT-TSBEEEEEECSSCTTHHHHHHHHHHH
T ss_pred CCCcCcccceEEEECC-CCEEEEEEecCCCCCcCHHHHHHHHH
Confidence 988 999999997 79999999995554444444444443
No 148
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=98.04 E-value=4.2e-06 Score=66.06 Aligned_cols=86 Identities=12% Similarity=0.070 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh--hHHHHHHhCCCCCCcEEEEEeC
Q 019378 69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKLDSIPVVLVVDP 146 (342)
Q Consensus 69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~--eg~~~~~~y~v~~~P~l~ii~p 146 (342)
+++..|+..+|..+|+|+++||..|+.+.. +|. ++- +.|-...++.+.. +...+++.|+|.++|+++|
T Consensus 3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p-~~~-----~~a-~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--- 72 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LFG-----AAF-DQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--- 72 (106)
T ss_dssp HHHHHHHHHHHHTCEEEECTTCHHHHHHHH-HHG-----GGG-GGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEE---
T ss_pred HhhHHHHhcCCCEEEEEECCCCHHHHHHHH-HHH-----HHH-HhCCEEEEecccccchhHHHHHHcCCeEeCEEEE---
Confidence 456777788899999999999999999952 222 222 2222333443333 4567899999999999776
Q ss_pred CCCceEEEEeCCCChHHHHHHH
Q 019378 147 ITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 147 ~tG~~l~~~~G~~~~~~~l~~L 168 (342)
+|+. +.|..+.+.|...+
T Consensus 73 -~G~~---~~G~~~~~~l~~~~ 90 (106)
T 3kp8_A 73 -NGRT---YTGVRSLEALAVAS 90 (106)
T ss_dssp -TTEE---EESCCCHHHHHHHH
T ss_pred -CCEE---ecCCCCHHHHHHHh
Confidence 5663 78999988876544
No 149
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=98.01 E-value=1.5e-05 Score=68.68 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=69.5
Q ss_pred HcCC-eEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCC--------hh-------------------H
Q 019378 76 VQDK-WLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDT--------SE-------------------G 126 (342)
Q Consensus 76 ~~~K-~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s--------~e-------------------g 126 (342)
-.+| ++||+|.++||..|......+ ..+.+-+ ..++.++.++.+. .+ .
T Consensus 43 ~~gk~~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~ 119 (196)
T 2ywi_A 43 VKSDAATVIMFICNHCPFVKHVQHEL---VRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDET 119 (196)
T ss_dssp HCCSSEEEEEECCSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSS
T ss_pred hCCCCeEEEEEeCCCCccHHHHHHHH---HHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCc
Confidence 3577 599999999999998765321 1122222 2358888887742 21 2
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEE---------EeCCCChHHHHHHHHhhhhcC
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRS---------WCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~---------~~G~~~~~~~l~~L~~~l~~~ 175 (342)
..++..|++..+|+++|||+ +|+++.+ ..|..+.+++...|...+...
T Consensus 120 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 176 (196)
T 2ywi_A 120 QEVAKAYDAACTPDFYIFDR-DLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR 176 (196)
T ss_dssp CHHHHHHTCCEESEEEEEET-TCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred hHHHHHhCCCCCCeEEEEcC-CCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence 34677899999999999997 7998877 357778999999998888754
No 150
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.00 E-value=1.1e-05 Score=79.80 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=79.8
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
..+|++++ .....++++||+|+++||..|+.+.... +.+.+.+...+.+..+|.+. ...+++.|+|.++|++.+
T Consensus 8 ~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Ptl~~ 81 (481)
T 3f8u_A 8 DDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLKGIVPLAKVDCTA--NTNTCNKYGVSGYPTLKI 81 (481)
T ss_dssp TTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCCEEEEETTT--CHHHHHHTTCCEESEEEE
T ss_pred HHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHhcCCCCCCEEEE
Confidence 45677666 2223349999999999999999997532 45566666667777777765 557899999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+. .|+.+..+.|..+.+.++..|...+.
T Consensus 82 ~~--~g~~~~~~~G~~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 82 FR--DGEEAGAYDGPRTADGIVSHLKKQAG 109 (481)
T ss_dssp EE--TTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred Ee--CCceeeeecCccCHHHHHHHHHhhcc
Confidence 95 68888889999999999888877664
No 151
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=98.00 E-value=2.2e-05 Score=56.96 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=56.3
Q ss_pred EEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCC-
Q 019378 81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV- 159 (342)
Q Consensus 81 LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~- 159 (342)
+.|+|+++||..|+.+...+ +++.+-...++.+..++ ...++..|++.++|+++| +|+.+.. |..
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~-----~~~~~~~~~v~~~Pt~~~----~G~~~~~--G~~~ 67 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK-----EMDQILEAGLTALPGLAV----DGELKIM--GRVA 67 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC-----SHHHHHHHTCSSSSCEEE----TTEEEEC--SSCC
T ss_pred cEEEEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec-----CHHHHHHCCCCcCCEEEE----CCEEEEc--CCCC
Confidence 46899999999999996543 44555555678888776 346788999999999988 5887655 887
Q ss_pred ChHHHHHHH
Q 019378 160 QPESLLEDL 168 (342)
Q Consensus 160 ~~~~~l~~L 168 (342)
+.+++.+.|
T Consensus 68 ~~~~l~~~l 76 (77)
T 1ilo_A 68 SKEEIKKIL 76 (77)
T ss_dssp CHHHHHHHC
T ss_pred CHHHHHHHh
Confidence 888876543
No 152
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.4e-05 Score=66.16 Aligned_cols=92 Identities=16% Similarity=0.231 Sum_probs=63.6
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecC--------Ch-hHHHHH----------------
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDD--------TS-EGKKVC---------------- 130 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~--------s~-eg~~~~---------------- 130 (342)
.+|++||+|..+||.+|. .... | ..+.+-+ ..++.++.++.+ +. +...++
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~~-l--~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~ 106 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYKE-L--EALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDV 106 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHHH-H--HHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBS
T ss_pred CCCEEEEEEEecCCCcch-hHHH-H--HHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccC
Confidence 589999999999999999 4322 1 1222222 235888888763 21 122233
Q ss_pred --------------HhCCCCCCc------EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 131 --------------TYYKLDSIP------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 131 --------------~~y~v~~~P------~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
..|++..+| +++|||+ +|.++.++.|..+++.+...|...+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 168 (171)
T 3cmi_A 107 NGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK-KGKVYERYSSLTKPSSLSETIEELLK 168 (171)
T ss_dssp SSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECS-SSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred CCccchHHHHHHHhccCCcCCCCcccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 246788899 9999997 79999999999999988888887765
No 153
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=97.98 E-value=4.9e-05 Score=63.52 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=65.6
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecC--------Chh-HHHHHH-hC------------
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--------TSE-GKKVCT-YY------------ 133 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~--------s~e-g~~~~~-~y------------ 133 (342)
.+|++||+|..+||..|......+ .++.+-+. .++.++.++.+ +.+ ...++. .|
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAEM---NQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDV 107 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBS
T ss_pred CCCEEEEEEEeccCCccHHHHHHH---HHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeecc
Confidence 589999999999999998764332 12222222 35888888764 222 233444 32
Q ss_pred -----------------CC--CCCc---EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 134 -----------------KL--DSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 134 -----------------~v--~~~P---~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
++ ..+| +++|||+ .|+++.++.|..+++++...|...+.
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 168 (170)
T 2p5q_A 108 NGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNK-DGQVVDRYYPTTSPLSLERDIKQLLE 168 (170)
T ss_dssp SSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred CCCchHHHHHHHHhcCCCccCCcccccccEEEECC-CCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence 33 5678 9999997 79999999999999988888877664
No 154
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=97.98 E-value=2.2e-05 Score=67.30 Aligned_cols=92 Identities=14% Similarity=0.097 Sum_probs=66.3
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCC--------hh-------------------H
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT--------SE-------------------G 126 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s--------~e-------------------g 126 (342)
.+|++||+|.++||..|.... +.+.++.+ +.+.++.++.+. .+ .
T Consensus 32 ~gk~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~ 105 (188)
T 2cvb_A 32 HEPLLAVVFMCNHCPYVKGSI------GELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDET 105 (188)
T ss_dssp CSSEEEEEEECSSCHHHHTTH------HHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSS
T ss_pred CCCEEEEEEECCCCccHHHHH------HHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCc
Confidence 579999999999999998754 33333332 237778877742 11 2
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEE--------EeCCCChHHHHHHHHhhhhcC
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRS--------WCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~--------~~G~~~~~~~l~~L~~~l~~~ 175 (342)
..++..|++..+|+++|||+ +|+++.+ ..|..+++++...|...+...
T Consensus 106 ~~~~~~~~v~~~P~~~lid~-~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 161 (188)
T 2cvb_A 106 QEVAKAYRALRTPEVFLFDE-RRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE 161 (188)
T ss_dssp SHHHHHTTCCEESEEEEECT-TCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred chHHHHcCCCCCCeEEEECC-CCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence 34677899999999999997 7888876 112236788988888888754
No 155
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=97.97 E-value=1.1e-05 Score=65.91 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=60.8
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhH------------------------HH
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEG------------------------KK 128 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg------------------------~~ 128 (342)
.+|++||+|..+||.+|.... +.+.++.+ .++.++.++.+.... ..
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 104 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE 104 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSH
T ss_pred CCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchH
Confidence 689999999999999999874 45555554 358888887764321 25
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
++..|++..+|+++|||+ +|+++.+. ++++++.+.|
T Consensus 105 ~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l 140 (143)
T 4fo5_A 105 LYKKYDLRKGFKNFLIND-EGVIIAAN---VTPEKLTEIL 140 (143)
T ss_dssp HHHHTTGGGCCCEEEECT-TSBEEEES---CCHHHHHHHH
T ss_pred HHHHcCCCCCCcEEEECC-CCEEEEcc---CCHHHHHHHH
Confidence 677899999999999997 78988664 3455555444
No 156
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=97.94 E-value=2.9e-05 Score=73.64 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=74.5
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIP 139 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P 139 (342)
+-..+|++.+ ...+|++||+|+++||..|+.+...+ ..+.+.+.. ++++..+|.+... +..|++.+||
T Consensus 254 l~~~~f~~~~---~~~~k~~lv~f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~~~~----~~~~~v~~~P 323 (361)
T 3uem_A 254 LVGKNFEDVA---FDEKKNVFVEFYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDSTANE----VEAVKVHSFP 323 (361)
T ss_dssp ECTTTHHHHH---TCTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTTCB----CSSCCCCSSS
T ss_pred eecCchhhhc---ccCCCcEEEEEecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECCccc----hhhcCCcccC
Confidence 3345676655 45789999999999999999986432 334444444 4999999987766 5789999999
Q ss_pred EEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
+++++....|+.+..+.|..+.+.|+..|..
T Consensus 324 t~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~ 354 (361)
T 3uem_A 324 TLKFFPASADRTVIDYNGERTLDGFKKFLES 354 (361)
T ss_dssp EEEEECSSSSCCCEECCSCSSHHHHHHHHTT
T ss_pred eEEEEECCCCcceeEecCCCCHHHHHHHHHh
Confidence 9999975445677888999999988765543
No 157
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=97.94 E-value=2e-05 Score=77.82 Aligned_cols=102 Identities=11% Similarity=0.163 Sum_probs=78.0
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIP 139 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P 139 (342)
.-..+|++++ ...+|++||+|+++||..|+.+...+ ..+.+.+.+ ++++..+|.+.. .++..|++.++|
T Consensus 357 ~~~~~~~~~~---~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~v~~~~id~~~~---~~~~~~~v~~~P 427 (481)
T 3f8u_A 357 VVAENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLSKDPNIVIAKMDATAN---DVPSPYEVRGFP 427 (481)
T ss_dssp ECTTTHHHHH---TCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTSS---CCCTTCCCCSSS
T ss_pred ecccCHHHHh---hcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhccCCCEEEEEEECCch---hhHhhCCCcccC
Confidence 3345676665 34689999999999999999996543 445555554 699999998765 467789999999
Q ss_pred EEEEEeCCCCce-EEEEeCCCChHHHHHHHHhhhh
Q 019378 140 VVLVVDPITGQK-MRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 140 ~l~ii~p~tG~~-l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+++++.. +|++ +.+..|..+.+.|+..|.....
T Consensus 428 t~~~~~~-~~~~~~~~~~G~~~~~~l~~~l~~~~~ 461 (481)
T 3f8u_A 428 TIYFSPA-NKKLNPKKYEGGRELSDFISYLQREAT 461 (481)
T ss_dssp EEEEECT-TCTTSCEECCSCCSHHHHHHHHHHHCS
T ss_pred EEEEEeC-CCeEeeeEeCCCCCHHHHHHHHHHhcC
Confidence 9999974 4443 6788899999999887776554
No 158
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=97.93 E-value=4.3e-05 Score=65.89 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=67.0
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecC--------Chh-HHHHH-Hh-------------
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--------TSE-GKKVC-TY------------- 132 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~--------s~e-g~~~~-~~------------- 132 (342)
.+|++||+|..+||..|......+ .++.+-+. .++.++.++.+ +.+ ...++ ..
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~ 123 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYETA---TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINV 123 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBS
T ss_pred CCCEEEEEEecCCCCccHHHHHHH---HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeeccc
Confidence 689999999999999997654221 12222222 35777777765 322 23344 21
Q ss_pred ----------------CCCCCCc------EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 133 ----------------YKLDSIP------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 133 ----------------y~v~~~P------~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
|++..+| +++|||+ .|+++.++.|..+++++...|...+..
T Consensus 124 ~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 186 (190)
T 2vup_A 124 NGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEKKLIPLLES 186 (190)
T ss_dssp SSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred CcccccHHHHHHHhhcCCcCCCccccccceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 4666788 9999997 799999999999999999988888764
No 159
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=97.90 E-value=6.2e-05 Score=71.38 Aligned_cols=97 Identities=13% Similarity=0.187 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhc------ccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCC
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRD------TWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDS 137 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rd------vl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~ 137 (342)
.+|++++ .+++++||+|+++||. |+.+... +|. .+.+.+.. ++.+..+|.+.. ..+++.|+|.+
T Consensus 19 ~~f~~~i----~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~--~~a~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~~ 89 (350)
T 1sji_A 19 KNFKQVL----KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLE--LVAQVLEHKDIGFVMVDAKKE--AKLAKKLGFDE 89 (350)
T ss_dssp HHHHHHH----TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHH--HHHHHGGGSSEEEEEEETTTT--HHHHHHHTCCS
T ss_pred HHHHHHH----hhCCeEEEEEECCCCc-chhhCchhhhhhHHHH--HHHHHHhhcCcEEEEEeCCCC--HHHHHhcCCCc
Confidence 3465554 5689999999999999 8665332 132 45566665 589998888654 56899999999
Q ss_pred CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
||++.++. .|+ +....|..+++.+.+.|...+.
T Consensus 90 ~Pt~~~~~--~g~-~~~~~G~~~~~~l~~~i~~~~~ 122 (350)
T 1sji_A 90 EGSLYVLK--GDR-TIEFDGEFAADVLVEFLLDLIE 122 (350)
T ss_dssp TTEEEEEE--TTE-EEEECSCCCHHHHHHHHHTTSS
T ss_pred cceEEEEE--CCc-EEEecCCCCHHHHHHHHHHhcC
Confidence 99999995 577 5578899999998877766554
No 160
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=97.88 E-value=6.6e-05 Score=71.89 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=76.2
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcc-c---CCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCC
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDT-W---ANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLD 136 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdv-l---~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~ 136 (342)
+-..+|++++ +.++++||+|+.+||..| .+|+.. + .-+.+...+.. ++.+..+|.+. ...+|+.|+|.
T Consensus 18 lt~~~f~~~i----~~~~~vlV~FyApWC~~~-~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~--~~~l~~~~~V~ 90 (367)
T 3us3_A 18 VNAKNYKNVF----KKYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK--DAAVAKKLGLT 90 (367)
T ss_dssp CCTTTHHHHH----HHCSEEEEEEECCCCSSH-HHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--THHHHHHHTCC
T ss_pred CCHHHHHHHH----hhCCeEEEEEECCCchhH-HHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc--cHHHHHHcCCC
Confidence 3467888877 457999999999999886 444311 0 11344555554 58888888875 45799999999
Q ss_pred CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 137 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 137 ~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+||++.++. .|+.+ ...|..+++.++..|...+.
T Consensus 91 ~~PTl~~f~--~G~~~-~y~G~~~~~~i~~~i~~~~~ 124 (367)
T 3us3_A 91 EEDSIYVFK--EDEVI-EYDGEFSADTLVEFLLDVLE 124 (367)
T ss_dssp STTEEEEEE--TTEEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred cCceEEEEE--CCcEE-EeCCCCCHHHHHHHHHHhcC
Confidence 999999997 57764 78899999999888877654
No 161
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=97.87 E-value=0.0001 Score=61.38 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=63.3
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCC--------h-hHHHH-HHhC------------
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDT--------S-EGKKV-CTYY------------ 133 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s--------~-eg~~~-~~~y------------ 133 (342)
.+||+||+|..+||..|......+ ..+.+-+. .++.++.++.+. . +...+ ...|
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 106 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYRQL---QEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKV 106 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCC
T ss_pred CCCEEEEEEeeccCCchHHHHHHH---HHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEee
Confidence 589999999999999997654321 11222222 357777777642 1 22333 1221
Q ss_pred -----------------C-----CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 134 -----------------K-----LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 134 -----------------~-----v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+ +..+|+++|||+ +|+++.++.|..+++.+...|...+.
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 167 (169)
T 2v1m_A 107 NGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR-QGQPVKRYSPTTAPYDIEGDIMELLE 167 (169)
T ss_dssp SSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred cCccccHHHHHHHhhcCCccCCcccccceEEEECC-CCCEEEEcCCCCCHHHHHHHHHHHhc
Confidence 2 334689999997 79999999999899988888877765
No 162
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=97.86 E-value=4.9e-05 Score=63.10 Aligned_cols=78 Identities=10% Similarity=-0.039 Sum_probs=59.3
Q ss_pred cCC-eEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChh---------------------HHHH
Q 019378 77 QDK-WLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSE---------------------GKKV 129 (342)
Q Consensus 77 ~~K-~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~e---------------------g~~~ 129 (342)
.+| +++|+|. ++||..|.... +.+.++.+ .++.++.++.++.+ ...+
T Consensus 34 ~gk~~vvl~F~~a~~C~~C~~~~------~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 107 (160)
T 1xvw_A 34 RGAKNVLLVFFPLAFTGICQGEL------DQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAV 107 (160)
T ss_dssp TTTCEEEEEECSCTTSSHHHHHH------HHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHH
T ss_pred cCCCCEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHH
Confidence 466 9999998 99999998764 33444433 36888888877643 3457
Q ss_pred HHhCCCC----CCc--EEEEEeCCCCceEEEEeCCCCh
Q 019378 130 CTYYKLD----SIP--VVLVVDPITGQKMRSWCGMVQP 161 (342)
Q Consensus 130 ~~~y~v~----~~P--~l~ii~p~tG~~l~~~~G~~~~ 161 (342)
+..|++. .+| +++|||+ +|.++.++.|..+.
T Consensus 108 ~~~~~v~~~~~~~p~~~~~lid~-~G~i~~~~~g~~~~ 144 (160)
T 1xvw_A 108 SQAYGVFNEQAGIANRGTFVVDR-SGIIRFAEMKQPGE 144 (160)
T ss_dssp HHHTTCEETTTTEECSEEEEECT-TSBEEEEEECCTTC
T ss_pred HHHcCCccccCCCeeeeEEEECC-CCeEEEEEecCCCC
Confidence 7889987 899 9999997 79999999887643
No 163
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.85 E-value=6.8e-05 Score=64.90 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=68.1
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH-----------------------HHHHH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG-----------------------KKVCT 131 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg-----------------------~~~~~ 131 (342)
.+|++||+|. .+||..|......+ ..+.+-+. .++.++.++.++.+. ..++.
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 120 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAF---SKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQ 120 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHH
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHH
Confidence 4799999999 99999998764322 11222222 368888888776431 24567
Q ss_pred hCCCC-----CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhhh
Q 019378 132 YYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 173 (342)
Q Consensus 132 ~y~v~-----~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l~ 173 (342)
.|++. .+|+++|||+ +|+++.++.|.. ++++++..|.....
T Consensus 121 ~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 121 AAGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLDALQS 170 (195)
T ss_dssp HHTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred HhCCcccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 78888 8999999997 799999988865 67888888877665
No 164
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=97.84 E-value=5e-05 Score=65.88 Aligned_cols=93 Identities=10% Similarity=0.062 Sum_probs=67.0
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh--------------------------HHHH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------------------GKKV 129 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e--------------------------g~~~ 129 (342)
.+|+++|+|. .+||..|......+- .-..++-..++.++.++.++.+ ...+
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l~--~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAFD--KRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSI 109 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHHH--HTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHH
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHH--HHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHH
Confidence 6899999999 999999987643211 1111222346888888877643 2356
Q ss_pred HHhCCCC-----CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378 130 CTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 172 (342)
Q Consensus 130 ~~~y~v~-----~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l 172 (342)
++.|++. .+|+++|||+ +|+++.++.|.. ++++++..|....
T Consensus 110 ~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 160 (198)
T 1zof_A 110 SRDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVDALL 160 (198)
T ss_dssp HHHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred HHHhCCcccCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 7788998 9999999997 799999988865 5677777766554
No 165
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=97.81 E-value=0.00011 Score=64.96 Aligned_cols=85 Identities=5% Similarity=0.024 Sum_probs=65.2
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 154 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~ 154 (342)
.+++++|+|+++||..|..+. +.+.++.. .++.+..+|.+. ...+++.|++.++|+++| +|+ +.+
T Consensus 135 ~~~~~~v~F~a~wC~~C~~~~------~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~----~G~-~~~ 201 (229)
T 2ywm_A 135 DIPIEIWVFVTTSCGYCPSAA------VMAWDFALANDYITSKVIDASE--NQDLAEQFQVVGVPKIVI----NKG-VAE 201 (229)
T ss_dssp CSCEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEEGGG--CHHHHHHTTCCSSSEEEE----GGG-TEE
T ss_pred CCCeEEEEEECCCCcchHHHH------HHHHHHHHHCCCeEEEEEECCC--CHHHHHHcCCcccCEEEE----CCE-EEE
Confidence 344558999999999999996 33333333 367888777754 456889999999999998 477 667
Q ss_pred EeCCCChHHHHHHHHhhhhc
Q 019378 155 WCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 155 ~~G~~~~~~~l~~L~~~l~~ 174 (342)
+.|..+.++|...|...+..
T Consensus 202 ~~G~~~~~~l~~~l~~~~~~ 221 (229)
T 2ywm_A 202 FVGAQPENAFLGYIMAVYEK 221 (229)
T ss_dssp EESCCCHHHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHhhh
Confidence 89999999998888877753
No 166
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=97.81 E-value=8.1e-05 Score=62.27 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=63.6
Q ss_pred cCCeEEEEEecCCCcc-hhhhhhcccCCHHHHHHHh-------ccEEEEEeecCC----hhH------------------
Q 019378 77 QDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS-------TNFIFWQVYDDT----SEG------------------ 126 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~-~~~f~rdvl~~~~V~~~i~-------~~FV~w~~~~~s----~eg------------------ 126 (342)
.+|++||+|..+||.+ |.... +.+.++.. .++.++.++++. ++.
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~------~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~ 107 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTL------LALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGS 107 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHH------HHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCC
T ss_pred CCCEEEEEEECCCCcchhHHHH------HHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCC
Confidence 6899999999999997 98764 33444433 257788877652 221
Q ss_pred ----HHHHHhCC---------------CCCCcEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhh
Q 019378 127 ----KKVCTYYK---------------LDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPF 171 (342)
Q Consensus 127 ----~~~~~~y~---------------v~~~P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~ 171 (342)
..+++.|+ +..+|+++||| +|+++.++.|.. +++++++.|...
T Consensus 108 ~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid--~G~i~~~~~g~~~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 108 PEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK--EGRLVLLYSPDKAEATDRVVADLQAL 171 (172)
T ss_dssp HHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE--TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE--CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence 24555554 35689999999 699999999987 889988877654
No 167
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=97.80 E-value=6.1e-05 Score=64.83 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=63.9
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecC--------C-hhHHHHHH------------
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDD--------T-SEGKKVCT------------ 131 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~--------s-~eg~~~~~------------ 131 (342)
.+|++||+|..+||.+|..... .+.++. ..++.++.++++ + .+..+++.
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~p------~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~ 118 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGYE------TATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAK 118 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHHH------HHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCC
T ss_pred CCCEEEEEEecCCCCCcHHHHH------HHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeec
Confidence 6899999999999999988542 333332 235777777654 1 22222222
Q ss_pred ---------------------hCCCCCCc---EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 132 ---------------------YYKLDSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 132 ---------------------~y~v~~~P---~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.|++..+| +++|||+ .|.++.++.|..+++++...|...+..
T Consensus 119 ~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~-~G~i~~~~~g~~~~~~l~~~i~~lL~~ 184 (187)
T 3dwv_A 119 INVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEEKLIPLLGS 184 (187)
T ss_dssp BCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred cccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence 12344677 9999997 799999999999999998888887763
No 168
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=97.80 E-value=7.6e-05 Score=64.00 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=68.3
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH-----------------------HHHHH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG-----------------------KKVCT 131 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg-----------------------~~~~~ 131 (342)
.+|++||+|. .+||..|......+ ..+.+-+. .++.++.++.++.+. ..+++
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELEDV---QKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISR 106 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHH---HHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHH
T ss_pred CCCCEEEEEECCCCCcchHHHHHHH---HHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHH
Confidence 5799999999 99999998764321 11222222 368888888776432 34667
Q ss_pred hCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhhh
Q 019378 132 YYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 173 (342)
Q Consensus 132 ~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l~ 173 (342)
.|++. .+|+++|||+ +|.++.++.|.. ++++++..|.....
T Consensus 107 ~~~v~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 157 (187)
T 1we0_A 107 QFDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGRDASTLINKVKAAQY 157 (187)
T ss_dssp HTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred HhCCCcCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 88887 8999999997 799999988864 67888888877664
No 169
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=97.74 E-value=0.00014 Score=62.07 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=59.5
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecC--------Ch-hHHHHHHhC-------------
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--------TS-EGKKVCTYY------------- 133 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~--------s~-eg~~~~~~y------------- 133 (342)
.+||+||+|..+||..|......+ .++.+-+. .++.++.++.+ +. +...++..|
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~ 122 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYTQL---VDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVN 122 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCS
T ss_pred CCCEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccC
Confidence 589999999999999997754321 11222222 35777777654 22 223333322
Q ss_pred ------------------C-----CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 134 ------------------K-----LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 134 ------------------~-----v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
+ +..+|+++|||+ +|+++.++.|..+++++...|..
T Consensus 123 ~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ 181 (183)
T 2obi_A 123 GDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPH 181 (183)
T ss_dssp STTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT-TSCEEEEECTTSCTHHHHTTSGG
T ss_pred CcchhHHHHHhhccCCCCCcccccccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHH
Confidence 2 233599999997 79999999998888887665544
No 170
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.74 E-value=0.00026 Score=62.15 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=69.3
Q ss_pred HcCCeEEEEEecC-CCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE-E
Q 019378 76 VQDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM-R 153 (342)
Q Consensus 76 ~~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l-~ 153 (342)
.+++.+||+|+++ ||..|+.+... |. ++.+. ..++.+..+|.+.++...++..|++.++|++.|+. .|+.. .
T Consensus 20 ~~~~v~lv~f~~~~~C~~C~~~~~~-~~--~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~ 93 (226)
T 1a8l_A 20 MVNPVKLIVFVRKDHCQYCDQLKQL-VQ--ELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQ--DGKDFGV 93 (226)
T ss_dssp CCSCEEEEEEECSSSCTTHHHHHHH-HH--HHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEE--TTBCCSE
T ss_pred cCCCeEEEEEecCCCCchhHHHHHH-HH--HHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEc--CCceeeE
Confidence 3456778999999 99999998532 21 23322 35788889999887788999999999999999995 46543 6
Q ss_pred EEeCCCChHHHHHHHHhhhh
Q 019378 154 SWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 154 ~~~G~~~~~~~l~~L~~~l~ 173 (342)
++.|..+.+.+...+...++
T Consensus 94 ~~~G~~~~~~l~~~l~~~l~ 113 (226)
T 1a8l_A 94 RYFGLPAGHEFAAFLEDIVD 113 (226)
T ss_dssp EEESCCCTTHHHHHHHHHHH
T ss_pred EEeccCcHHHHHHHHHHHHh
Confidence 78898877777666666554
No 171
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=97.70 E-value=0.00016 Score=62.62 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=66.6
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCChhH--------------------------HH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEG--------------------------KK 128 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~eg--------------------------~~ 128 (342)
.+||++|+|+ .+||..|......+ .++.+-+ ..++.++.++.++.+. ..
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 109 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEIIAF---SNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRR 109 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhCCCCCCceEEEECCcHH
Confidence 5799999999 99999999865322 1122222 3468888888876531 24
Q ss_pred HHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378 129 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 172 (342)
Q Consensus 129 ~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l 172 (342)
++..|++. .+|+++|||+ .|.++..+.|.. +.++++..|....
T Consensus 110 ~~~~~gv~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~e~l~~l~~l~ 162 (197)
T 1qmv_A 110 LSEDYGVLKTDEGIAYRGLFIIDG-KGVLRQITVNDLPVGRSVDEALRLVQAFQ 162 (197)
T ss_dssp HHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHcCCccCCCCceeeEEEEECC-CCcEEEEEeCCCCCCCCHHHHHHHHHhcc
Confidence 67788887 7999999997 799998888854 4577777666543
No 172
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=97.69 E-value=0.00024 Score=60.53 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=66.1
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecC--------C-hhHHHHHHh-CCCC---------
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--------T-SEGKKVCTY-YKLD--------- 136 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~--------s-~eg~~~~~~-y~v~--------- 136 (342)
.+|++||+|..+||..|......+ .++.+-+. .++.++.++++ + .+...+++. |++.
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~l---~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~ 113 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLGL---KELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKI 113 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCC
T ss_pred CCCEEEEEEEecCCCCcHHHHHHH---HHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeec
Confidence 689999999999999999864321 12222233 35888888754 2 233456655 4331
Q ss_pred -----------------CCcE----EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 137 -----------------SIPV----VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 137 -----------------~~P~----l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.+|. .+|||+ .|.++.++.|..+++.+...|...++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~lL~~ 171 (180)
T 3kij_A 114 LGSEGEPAFRFLVDSSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPIEVIRPDIAALVRQ 171 (180)
T ss_dssp SSTTCCHHHHHHHHHHTCCCSSTTCEEEECT-TSCEEEEECTTCCGGGTHHHHHHHHHH
T ss_pred cCccccHHHHHHHhcCCCCccccceEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 2566 899997 799999999999998887777777653
No 173
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=97.69 E-value=0.00014 Score=63.38 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=66.5
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HHH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 129 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~~ 129 (342)
.+||+||+|+ .+||..|......+ +.-..++-..++.++.++.++.+. ..+
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~l--~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~ 112 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQF--SDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCI 112 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHH
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHH
Confidence 5799999999 99999998764321 111122223468888888876432 246
Q ss_pred HHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378 130 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 172 (342)
Q Consensus 130 ~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l 172 (342)
++.|++. .+|+++|||+ .|.++.++.|.. +.++++..|....
T Consensus 113 ~~~ygv~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 113 MKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKAFQ 164 (202)
T ss_dssp HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHcCCccCCCCceeeEEEEECC-CCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence 6778887 8999999997 799998887754 3578877776654
No 174
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.69 E-value=4.3e-05 Score=80.06 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=69.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+|++++ +.++++||+|+++||..|+.+...+ +.+.+.+...+.+..+|.+.. ..+++.|+|.++|++.++
T Consensus 124 ~~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~ 194 (780)
T 3apo_A 124 REFDAAV----NSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVDGLLRIGAVNCGDD--RMLCRMKGVNSYPSLFIF 194 (780)
T ss_dssp HHHHHHH----TSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTC--SSCC--------CEEEEE
T ss_pred HhHHhhh----cCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhcCceEEEEEeCCCc--HHHHHHcCCceeeeEEEE
Confidence 3555555 7899999999999999999997543 455666666788888887654 358889999999999988
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 145 DPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
. .|+.+.++.|..+++.+...|...+.
T Consensus 195 ~--~g~~~~~~~G~~~~~~l~~~l~~~~~ 221 (780)
T 3apo_A 195 R--SGMAAVKYNGDRSKESLVAFAMQHVR 221 (780)
T ss_dssp C--TTSCCEECCSCSCHHHHHHHHHTTSC
T ss_pred e--CCcEeeEecCCCCHHHHHHHHHHhch
Confidence 4 68878889999999988887766553
No 175
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=97.67 E-value=0.00029 Score=61.28 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=65.7
Q ss_pred HcCCeEEEEEecCCCcc-hhhhhhcccCCHHHHHHHh----ccEEEEEeecC----Chh---------------------
Q 019378 76 VQDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS----TNFIFWQVYDD----TSE--------------------- 125 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~-~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~----s~e--------------------- 125 (342)
-.+||+||+|..+||.+ |......+ .++.+-+. .++.++.++++ +++
T Consensus 39 ~~Gk~vlv~F~at~C~~vC~~~~~~l---~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d 115 (200)
T 2b7k_A 39 LLGKFSIIYFGFSNCPDICPDELDKL---GLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFD 115 (200)
T ss_dssp GTTSCEEEEEECTTCCSHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHH
T ss_pred cCCCEEEEEEECCCCcchhHHHHHHH---HHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHH
Confidence 35899999999999998 98753221 11222222 35666666655 222
Q ss_pred -HHHHHHhCCCC-CC---------------cEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 126 -GKKVCTYYKLD-SI---------------PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 126 -g~~~~~~y~v~-~~---------------P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
...+++.|++. .. |+++|||+ .|.++..+.|..+++.+.+.|...+...
T Consensus 116 ~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~-~G~i~~~~~g~~~~~~~~~~i~~~l~~l 181 (200)
T 2b7k_A 116 EVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKSY 181 (200)
T ss_dssp HHHHHHHHTTC--------------CTTTCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 23566778775 33 37899997 7999999999889999999998888753
No 176
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=97.66 E-value=8.6e-05 Score=63.47 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=63.8
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecC--------Ch-hHHHHHHh-CC----------
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDD--------TS-EGKKVCTY-YK---------- 134 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~--------s~-eg~~~~~~-y~---------- 134 (342)
-.+|++||+|..+||..|......+ .++.+-+ ..++.++.++.+ +. +...+++. ++
T Consensus 47 ~~Gk~vlv~F~atwC~~C~~~~p~l---~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d 123 (181)
T 2p31_A 47 YRGSVSLVVNVASECGFTDQHYRAL---QQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIA 123 (181)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCC
T ss_pred cCCCEEEEEEeccCCCCcHHHHHHH---HHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecc
Confidence 3689999999999999999754321 1222222 235888888765 22 23344443 22
Q ss_pred -------------CCCCc-------EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 135 -------------LDSIP-------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 135 -------------v~~~P-------~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
+..+| +.+|||+ .|+++.++.|..+++++...|...+
T Consensus 124 ~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 124 VTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAP-DGKVVGAWDPTVSVEEVRPQITALV 180 (181)
T ss_dssp CSSTTSCHHHHHHHHHHSCCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred cCCccchhhhhhhhhcCCCccccceeEEEEcC-CCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 23467 8999997 7999999999999998887776654
No 177
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=97.66 E-value=0.00017 Score=62.19 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=66.4
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HHH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 129 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~~ 129 (342)
.+|+++|+|+ .+||..|......+- ....++-..++.++.++.++.+. ..+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~--~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 107 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIALD--KALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSI 107 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHHHH--HTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHH--HHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHH
Confidence 5799999999 999999987643211 11122223568888888876442 246
Q ss_pred HHhCCCC-----CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378 130 CTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 172 (342)
Q Consensus 130 ~~~y~v~-----~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l 172 (342)
+..|++. .+|+++|||+ +|.++..+.|.. +.++++..|....
T Consensus 108 ~~~~gv~~~~g~~~P~~~liD~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 108 ARSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDALQ 158 (192)
T ss_dssp HHHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred HHHhCCcCcCCceeeEEEEEcC-CCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 7789998 8999999997 799998887743 4677777766554
No 178
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=97.64 E-value=0.0002 Score=58.24 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=67.2
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHHHHHHhCCCCC--CcEEEEEeCCCCc
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDPITGQ 150 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~~~~~~y~v~~--~P~l~ii~p~tG~ 150 (342)
...++++|+|+++ |.+|+.+. +.+.++-+ ..+.|..+|++. ...++..|++.+ +|+++|+....|+
T Consensus 21 ~~~~pv~v~f~a~-~~~c~~~~------p~l~~~A~~~~gk~~f~~vd~d~--~~~~a~~~gi~~~~iPtl~i~~~~~g~ 91 (133)
T 2djk_A 21 SAGIPLAYIFAET-AEERKELS------DKLKPIAEAQRGVINFGTIDAKA--FGAHAGNLNLKTDKFPAFAIQEVAKNQ 91 (133)
T ss_dssp HTTSCEEEEECSC-SSSHHHHH------HHHHHHHHSSTTTSEEEEECTTT--TGGGTTTTTCCSSSSSEEEEECTTTCC
T ss_pred cCCCCEEEEEecC-hhhHHHHH------HHHHHHHHHhCCeEEEEEEchHH--hHHHHHHcCCCcccCCEEEEEecCcCc
Confidence 5678999999998 88998764 33444443 467888878763 345889999999 9999999853466
Q ss_pred eEEEEe--CCCChHHHHHHHHhhhh
Q 019378 151 KMRSWC--GMVQPESLLEDLVPFMD 173 (342)
Q Consensus 151 ~l~~~~--G~~~~~~~l~~L~~~l~ 173 (342)
.. .+. |.++.+.+...|..+++
T Consensus 92 ~~-~~~~~g~~~~~~l~~fi~~~l~ 115 (133)
T 2djk_A 92 KF-PFDQEKEITFEAIKAFVDDFVA 115 (133)
T ss_dssp BC-CCCSSSCCCHHHHHHHHHHHHH
T ss_pred cc-CCCCccccCHHHHHHHHHHHHc
Confidence 53 554 99999999888888886
No 179
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=97.64 E-value=0.00022 Score=63.23 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=67.7
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HHH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 129 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~~ 129 (342)
.+||+||+|+ .+||..|......+ .....++-..++.++.++.++.+. ..+
T Consensus 55 ~Gk~vll~F~pa~~Cp~C~~~~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i 132 (220)
T 1zye_A 55 KGKYLVLFFYPLDFTFVCPTEIIAF--SDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 132 (220)
T ss_dssp TTSEEEEEECSCTTCSSSHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHH
Confidence 5799999999 99999999764321 111222323578888888876432 346
Q ss_pred HHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhhh
Q 019378 130 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 173 (342)
Q Consensus 130 ~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l~ 173 (342)
++.|++. .+|+++|||+ +|.++..+.|.. +.++++..|.....
T Consensus 133 ~~~ygv~~~~~g~~~P~~~liD~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~~ 185 (220)
T 1zye_A 133 SRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVKAFQF 185 (220)
T ss_dssp HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred HHHhCCeecCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 7788888 8999999997 799998887753 45788877776553
No 180
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=97.63 E-value=0.0003 Score=61.91 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=63.8
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecC--------C-hhHHHHHH------hCC-----
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDD--------T-SEGKKVCT------YYK----- 134 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~--------s-~eg~~~~~------~y~----- 134 (342)
-.+|++||+|..+||.+|......+ .++.+-+ ...+.++.++.+ + .+...+++ .|+
T Consensus 45 ~~Gk~vlv~FwatwC~~C~~e~p~l---~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~ 121 (208)
T 2f8a_A 45 LRGKVLLIENVASLGGTTVRDYTQM---NELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFML 121 (208)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEE
T ss_pred cCCCEEEEEEECCCCccHHHHHHHH---HHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEE
Confidence 4689999999999999998743221 1222222 245888888765 1 22334443 332
Q ss_pred ------------------------------------------------CCCCcEEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378 135 ------------------------------------------------LDSIPVVLVVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 135 ------------------------------------------------v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
+...|+.+|||+ .|+++.++.|..+++++..
T Consensus 122 l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~-~G~i~~~~~g~~~~~~l~~ 200 (208)
T 2f8a_A 122 FEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP-DGVPLRRYSRRFQTIDIEP 200 (208)
T ss_dssp BCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHH
T ss_pred EEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcC-CCcEEEEeCCCCCHHHHHH
Confidence 222488999996 7999999999999988888
Q ss_pred HHHhhhh
Q 019378 167 DLVPFMD 173 (342)
Q Consensus 167 ~L~~~l~ 173 (342)
.|...+.
T Consensus 201 ~I~~ll~ 207 (208)
T 2f8a_A 201 DIEALLS 207 (208)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 7776653
No 181
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=97.62 E-value=0.00035 Score=61.70 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=67.1
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HHH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 129 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~~ 129 (342)
.+||+||+|+ .+||..|......+ ++...+|-..++.++.++.++.+. ..+
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~ 128 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSI 128 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHH
Confidence 6799999999 99999998865321 111122223578888888876442 246
Q ss_pred HHhCCCC-----CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378 130 CTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 172 (342)
Q Consensus 130 ~~~y~v~-----~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l 172 (342)
++.|++. .+|+++|||+ +|.++..+.|.. +.++++..|....
T Consensus 129 ~~~ygv~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 129 SKDYNVLFDDSVSLRAFVLIDM-NGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp HHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHhCCccccCCcccEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 6788888 8999999997 799988877643 4788888777654
No 182
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=97.56 E-value=0.00021 Score=60.95 Aligned_cols=94 Identities=10% Similarity=0.044 Sum_probs=63.6
Q ss_pred HHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHH
Q 019378 50 NLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGK 127 (342)
Q Consensus 50 ~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~ 127 (342)
++.+.|.... ....+.+++ +.-.+|+++|+|..+||.+|..+. |.+.++.. .++.+..++++ +..
T Consensus 31 ~~~~~~~~~~---~~~~~~~~l--~~~~~k~vvv~F~A~WC~pC~~~~------P~l~~l~~~~~~v~~~~v~~d--~~~ 97 (167)
T 1z6n_A 31 RFRQKLESNG---LPSALTERL--QRIERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIISKG--RAE 97 (167)
T ss_dssp HHHHHHHHHC---CCHHHHHHH--HTCCSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEECHH--HHH
T ss_pred HHHHHHHccC---CCHHHHHHH--HHhCCCEEEEEEECCCChhHHHHH------HHHHHHHHHCCCcEEEEEECC--CCH
Confidence 5666665321 222333333 233679999999999999999985 34444433 35777766654 455
Q ss_pred HHHHhCC---CCCCcEEEEEeCCCCceEEEEeC
Q 019378 128 KVCTYYK---LDSIPVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 128 ~~~~~y~---v~~~P~l~ii~p~tG~~l~~~~G 157 (342)
.++..|. +.++|+++|++. .|+++.++.|
T Consensus 98 ~~~~~~~~~~v~~iPt~i~~~~-~G~~~~~~g~ 129 (167)
T 1z6n_A 98 DDLRQRLALERIAIPLVLVLDE-EFNLLGRFVE 129 (167)
T ss_dssp HHTTTTTTCSSCCSSEEEEECT-TCCEEEEEES
T ss_pred HHHHHHHHcCCCCcCeEEEECC-CCCEEEEEcC
Confidence 6777786 999999999996 5788888844
No 183
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=97.55 E-value=0.00038 Score=59.56 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=59.8
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCC--------h-hHHHHHHhCCC--------
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDT--------S-EGKKVCTYYKL-------- 135 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s--------~-eg~~~~~~y~v-------- 135 (342)
.+|++||+|..+||..|..... .+.++. ..++.++.++.+. . +...+++.|++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~------~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 121 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYT------QLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKI 121 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH------HHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCC
T ss_pred CCCEEEEEEecCCCCchHHHHH------HHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeee
Confidence 6899999999999999976532 233322 2357777776542 2 23344443322
Q ss_pred ----------------------------CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 136 ----------------------------DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 136 ----------------------------~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
..+|+++|||+ .|+++.++.|..+++++...|...
T Consensus 122 d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~l 184 (185)
T 2gs3_A 122 CVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPHY 184 (185)
T ss_dssp BSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECT-TSCEEEEECTTSCGGGGGGGHHHH
T ss_pred ccCChhhhHHHHHHHhhcccccccCCcccccceEEEECC-CCCEEEeeCCCCCHHHHHHHHHHh
Confidence 12589999997 799999999988888776665543
No 184
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=97.55 E-value=0.00089 Score=57.82 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=79.7
Q ss_pred HHHHHhhCCCCcC-cccccHHHHHHHHHHcCCeEEEEEec-------CCCcchhhhhhcccCCHHHHHHHh-----ccEE
Q 019378 49 DNLASLYRPPFHL-MFNGSFEKAKDAASVQDKWLLVNLQS-------TKEFSSHMLNRDTWANEAVSQTIS-----TNFI 115 (342)
Q Consensus 49 ~~l~~~f~pp~~~-~f~gs~~eA~~~Ak~~~K~LlV~l~~-------~~~~~~~~f~rdvl~~~~V~~~i~-----~~FV 115 (342)
..|.++-.+...+ +-..+|++.+. ...+.++||+|.. .||..|+.|... | +.|.+-.. .+.+
T Consensus 9 ~~l~~l~~~~~vi~lt~~nF~~~v~--~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~-~--e~lA~~~~~~~~~~~v~ 83 (178)
T 3ga4_A 9 DDILQLKDDTGVITVTADNYPLLSR--GVPGYFNILYITMRGTNSNGMSCQLCHDFEKT-Y--HAVADVIRSQAPQSLNL 83 (178)
T ss_dssp HHHHTTCCTTSEEECCTTTHHHHTT--CCTTCEEEEEEECCSBCTTSCBCHHHHHHHHH-H--HHHHHHHHHHCTTCCEE
T ss_pred HHHHHhhccCCCEECCHHHHHHHHc--ccCCCcEEEEEeCCCCCCCCCCChhHHHHHHH-H--HHHHHHhhhccCCCCEE
Confidence 3444444433333 45678987553 3456799999999 499999999532 1 22333333 5788
Q ss_pred EEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCce----------EEEE---eC-CCChHHHHHHHHhhhhc
Q 019378 116 FWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK----------MRSW---CG-MVQPESLLEDLVPFMDG 174 (342)
Q Consensus 116 ~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~----------l~~~---~G-~~~~~~~l~~L~~~l~~ 174 (342)
|..+|++. ...+++.|+|.++|+|+++.+-.+.. -..+ .| ..+++.|.+.|..-+..
T Consensus 84 f~kvD~d~--~~~la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~ 154 (178)
T 3ga4_A 84 FFTVDVNE--VPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNI 154 (178)
T ss_dssp EEEEETTT--CHHHHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTC
T ss_pred EEEEECcc--CHHHHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCC
Confidence 88888774 77899999999999999998743222 1222 24 67888888877766653
No 185
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=97.54 E-value=0.00047 Score=57.67 Aligned_cols=93 Identities=11% Similarity=0.163 Sum_probs=60.3
Q ss_pred cCCeEEEEEecCCCc-chhhhhhcccCCHHHHHHHhc---cEEEEEeecC----ChhH-HHHHHh---------------
Q 019378 77 QDKWLLVNLQSTKEF-SSHMLNRDTWANEAVSQTIST---NFIFWQVYDD----TSEG-KKVCTY--------------- 132 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~-~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~----s~eg-~~~~~~--------------- 132 (342)
.+|++||+|..+||. .|......+ ..+.+.+.+ ++.++.++.+ +.+. ..+++.
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~ 108 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHM---TDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYS 108 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHH---HHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSC
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHH---HHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCC
Confidence 579999999999998 886543211 112222222 2666666654 2221 122221
Q ss_pred ----------------------CCCCCCcEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhhhh
Q 019378 133 ----------------------YKLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMD 173 (342)
Q Consensus 133 ----------------------y~v~~~P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~l~ 173 (342)
|.+...|+++|||+ .|.++.++.|.. +++++++.|...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 109 QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKSAST 172 (174)
T ss_dssp HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECC-CCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 34566899999997 799999999975 57888888877664
No 186
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.54 E-value=0.00026 Score=74.07 Aligned_cols=119 Identities=8% Similarity=0.024 Sum_probs=83.8
Q ss_pred HHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH
Q 019378 48 RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK 127 (342)
Q Consensus 48 ~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~ 127 (342)
...|-..+.++.. ..-+-+.........+|+++|+|+.+||.+|+.+...+ ..+.+-...++.+..+|.+. ..
T Consensus 647 l~~fi~~~~~~~v--~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~vd~~~--~~ 719 (780)
T 3apo_A 647 LRSWGLGFLPQAS--IDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIKGKVRAGKVDCQA--YP 719 (780)
T ss_dssp HHHHHHTTSCCCS--EEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTT--CH
T ss_pred HHHHHhhhccccc--ccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCceEEEEECCC--CH
Confidence 4444455555532 22233333334456789999999999999999986443 44555555678888888765 34
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeC----CCChHHHHHHHHhhhhcC
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G----~~~~~~~l~~L~~~l~~~ 175 (342)
.++..|++.++|+++++. .|+.+.++.| ..+.+.|...|...+...
T Consensus 720 ~~~~~~~v~~~Pt~~~~~--~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~ 769 (780)
T 3apo_A 720 QTCQKAGIKAYPSVKLYQ--YERAKKSIWEEQINSRDAKTIAALIYGKLETL 769 (780)
T ss_dssp HHHHHTTCCSSSEEEEEE--EETTTTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred HHHHhcCCCcCCEEEEEc--CCCccccccCcccCCcCHHHHHHHHHHHHHHh
Confidence 688999999999999993 5777766666 479999999888887643
No 187
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=97.53 E-value=0.0003 Score=62.16 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=66.5
Q ss_pred cCCe-EEEEEecCCCcchhhhhhcccCCHHHHHHH---h-ccEEEEEeecCC--------hh------------------
Q 019378 77 QDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTI---S-TNFIFWQVYDDT--------SE------------------ 125 (342)
Q Consensus 77 ~~K~-LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~-~~FV~w~~~~~s--------~e------------------ 125 (342)
.+|+ +||+|..+||..|..... .+.++. . .++.++.++.+. .+
T Consensus 57 ~gk~~vll~F~a~~C~~C~~~~~------~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 130 (218)
T 3u5r_E 57 KDSPALLVAFISNRCPFVVLIRE------ALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKD 130 (218)
T ss_dssp TTCSEEEEEECCSSCHHHHTTHH------HHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEEC
T ss_pred CCCCeEEEEEECCCCccHHHHHH------HHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEEC
Confidence 5785 999999999999987643 343333 2 358888888842 11
Q ss_pred -HHHHHHhCCCCCCcEEEEEeCCCCceEEEEe---------CCCChHHHHHHHHhhhhcC
Q 019378 126 -GKKVCTYYKLDSIPVVLVVDPITGQKMRSWC---------GMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 126 -g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~---------G~~~~~~~l~~L~~~l~~~ 175 (342)
...++..|++..+|+++|||+ +|+++.+.. |..+.+++...|...+...
T Consensus 131 ~~~~~~~~~~v~~~P~~~liD~-~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~ 189 (218)
T 3u5r_E 131 ASQSVAKAYGAACTPDFFLYDR-ERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK 189 (218)
T ss_dssp TTCHHHHHHTCCEESEEEEECT-TCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred CccHHHHHcCCCCCCeEEEECC-CCcEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence 235778899999999999997 788875532 2345788888888887654
No 188
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=96.67 E-value=1.3e-05 Score=66.72 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=60.6
Q ss_pred HHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCCh--hHHHHH----------------
Q 019378 70 AKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTS--EGKKVC---------------- 130 (342)
Q Consensus 70 A~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~--eg~~~~---------------- 130 (342)
.+..+.-.+|++||+|..+||..|..+... |...-...+- ..++.++.++.+.. ...++.
T Consensus 25 ~~~l~~~~gk~vll~f~a~~C~~C~~~~~~-l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~ 103 (159)
T 2ls5_A 25 QVTLSSLRGKVVMLQFTASWCGVCRKEMPF-IEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGAD 103 (159)
Confidence 444455578999999999999999887543 2221111222 34677777666543 122333
Q ss_pred --HhCC--CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378 131 --TYYK--LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 169 (342)
Q Consensus 131 --~~y~--v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~ 169 (342)
..|+ +..+|+++|||+ +|+++.++.| .+++++.+.|.
T Consensus 104 ~~~~~~~~~~~~P~~~lid~-~G~i~~~~~g-~~~~~l~~~l~ 144 (159)
T 2ls5_A 104 IFAKYALRDAGITRNVLIDR-EGKIVKLTRL-YNEEEFASLVQ 144 (159)
Confidence 3444 456999999997 7998888877 34555444333
No 189
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=97.50 E-value=0.00073 Score=60.87 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=66.1
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
.++..+|+|+++||..|..+... |. .+..... .++.+..+|++. ...++..|++.++|+++| +|+.+
T Consensus 137 ~~~~~vv~F~a~wC~~C~~~~p~-l~--~la~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~V~~vPt~~i----~G~~~ 207 (243)
T 2hls_A 137 KGRVHIETIITPSCPYCPYAVLL-AH--MFAYEAWKQGNPVILSEAVEAYE--NPDIADKYGVMSVPSIAI----NGYLV 207 (243)
T ss_dssp CSCEEEEEEECSSCSSHHHHHHH-HH--HHHHHHHHTTCCCEEEEEEETTT--CHHHHHHTTCCSSSEEEE----TTEEE
T ss_pred CCCcEEEEEECCCCCCcHHHHHH-HH--HHHHHcccccCCcEEEEEEECcc--CHHHHHHcCCeeeCeEEE----CCEEE
Confidence 46788999999999999998532 21 1222221 468888888764 346788999999999988 57754
Q ss_pred EEEeCCCChHHHHHHHHhhhhcC
Q 019378 153 RSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 153 ~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+.|..+.++|+..|...+..+
T Consensus 208 --~~G~~~~~~l~~~l~~~~~~~ 228 (243)
T 2hls_A 208 --FVGVPYEEDFLDYVKSAAEGR 228 (243)
T ss_dssp --EESCCCHHHHHHHHHHHHTTC
T ss_pred --EeCCCCHHHHHHHHHHHhhcc
Confidence 889999999999988888753
No 190
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=97.46 E-value=0.00021 Score=70.77 Aligned_cols=104 Identities=8% Similarity=0.051 Sum_probs=70.7
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--------ccEEEEEeecCChhHHHHHHhCC
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--------TNFIFWQVYDDTSEGKKVCTYYK 134 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--------~~FV~w~~~~~s~eg~~~~~~y~ 134 (342)
-..+|++++. ...+|++||+|+.+||..|+.+...+ +.+.+.+. +.+++..+|++.. ..++..|+
T Consensus 29 t~~~F~~~l~--~~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~~--~~la~~y~ 101 (470)
T 3qcp_A 29 SGDDFSRVHR--VAPLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCASE--VDLCRKYD 101 (470)
T ss_dssp SCSCGGGTCT--TGGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTTC--HHHHHHTT
T ss_pred CHHHHHHHHH--hCCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECCCC--HHHHHHcC
Confidence 3456766653 24669999999999999999996432 33333333 1488999888753 57899999
Q ss_pred CCCCcEEEEEeCCCCceE------------EEEeCCCChHHHHHHHHhhhh
Q 019378 135 LDSIPVVLVVDPITGQKM------------RSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 135 v~~~P~l~ii~p~tG~~l------------~~~~G~~~~~~~l~~L~~~l~ 173 (342)
|..+|+++|+++..+..+ .-+...++.+++...+...++
T Consensus 102 V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Lin 152 (470)
T 3qcp_A 102 INFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVN 152 (470)
T ss_dssp CCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHH
T ss_pred CCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 999999999986433222 122334677776666555553
No 191
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=97.46 E-value=0.00014 Score=72.26 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=72.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~~~~~~y~v~~~P~ 140 (342)
..+|++.+ ...+|++||+|+++||..|+.+...+ ..+.+.+. .++++..+|.+..+ ... |++.+||+
T Consensus 365 ~~~f~~~v---~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~---~~~-~~v~~~Pt 434 (504)
T 2b5e_A 365 GKNHDEIV---NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHTEND---VRG-VVIEGYPT 434 (504)
T ss_dssp TTTHHHHH---HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGGGCC---CSS-CCCSSSSE
T ss_pred cccHHHhh---ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCCccc---ccc-CCceecCe
Confidence 44566654 45789999999999999999996543 23434333 37999998886544 233 99999999
Q ss_pred EEEEeCCCCce--EEEEeCCCChHHHHHHHHhhhh
Q 019378 141 VLVVDPITGQK--MRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 141 l~ii~p~tG~~--l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
++++ + .|+. +.++.|..+.+.|+..|...+.
T Consensus 435 ~~~~-~-~G~~~~~~~~~G~~~~~~l~~~i~~~~~ 467 (504)
T 2b5e_A 435 IVLY-P-GGKKSESVVYQGSRSLDSLFDFIKENGH 467 (504)
T ss_dssp EEEE-C-CTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred EEEE-e-CCceecceEecCCCCHHHHHHHHHhcCC
Confidence 9999 3 5765 6677898999999887776544
No 192
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=97.41 E-value=0.00032 Score=62.21 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=62.6
Q ss_pred HcCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhH------------------------
Q 019378 76 VQDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG------------------------ 126 (342)
Q Consensus 76 ~~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg------------------------ 126 (342)
-.+|++||+|.. +||..|.... +.+.++. ..++.++.++.++.+.
T Consensus 67 ~~Gk~vll~F~a~~wC~~C~~~~------p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D 140 (222)
T 3ztl_A 67 YRGKYVVLFFYPADFTFVCPTEI------IAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLAD 140 (222)
T ss_dssp GTTSEEEEEECSCSSCSHHHHHH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEEC
T ss_pred hCCCeEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeC
Confidence 368999999994 9999999864 3333333 2468888888887542
Q ss_pred --HHHHHhCCCC------CCcEEEEEeCCCCceEEEEeCCCC----hHHHHHHHH
Q 019378 127 --KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMVQ----PESLLEDLV 169 (342)
Q Consensus 127 --~~~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~~----~~~~l~~L~ 169 (342)
..++..|++. .+|+++|||+ .|.++..+.|..+ .++++..|.
T Consensus 141 ~~~~~~~~ygv~~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~~il~~l~ 194 (222)
T 3ztl_A 141 RKQEISKAYGVFDEEDGNAFRGLFIIDP-NGILRQITINDKPVGRSVDETLRLLD 194 (222)
T ss_dssp SSSHHHHHTTCBCTTTSSBCEEEEEECT-TSEEEEEEEECTTBCCCHHHHHHHHH
T ss_pred CchHHHHHcCCeecCCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 1355678887 8999999997 7999988887543 455555443
No 193
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=97.39 E-value=0.00084 Score=55.71 Aligned_cols=79 Identities=14% Similarity=0.298 Sum_probs=54.7
Q ss_pred cCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HHHHhCCCC
Q 019378 77 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KVCTYYKLD 136 (342)
Q Consensus 77 ~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~~~~y~v~ 136 (342)
.+|+++|+|.. +||..|......+ +....++-..++.++.+..++.+.. .++..|++.
T Consensus 34 ~gk~~vl~F~~~~~c~~C~~~~~~l--~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 111 (163)
T 3gkn_A 34 AGHWLVIYFYPKDSTPGATTEGLDF--NALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVI 111 (163)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHHH--HHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCE
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCc
Confidence 57899999997 9999998754321 1111222234688888888776542 345667775
Q ss_pred C------------CcEEEEEeCCCCceEEEEeCC
Q 019378 137 S------------IPVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 137 ~------------~P~l~ii~p~tG~~l~~~~G~ 158 (342)
. .|+++|||+ .|.++..+.|.
T Consensus 112 ~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~~~ 144 (163)
T 3gkn_A 112 KEKNMYGKQVLGIERSTFLLSP-EGQVVQAWRKV 144 (163)
T ss_dssp EEEEETTEEEEEECCEEEEECT-TSCEEEEECSC
T ss_pred cccccccccccCcceEEEEECC-CCeEEEEEcCC
Confidence 5 899999997 79998888653
No 194
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=96.51 E-value=2.4e-05 Score=63.37 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=52.3
Q ss_pred HcCC-eEEEEEecCCCcchhhhhhcccCCHHHHHHH---hccEEEEEeecCChh-----------------------HHH
Q 019378 76 VQDK-WLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSE-----------------------GKK 128 (342)
Q Consensus 76 ~~~K-~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~~~FV~w~~~~~s~e-----------------------g~~ 128 (342)
-.+| ++||+|+.+||..|..+...+ ..+.+-+ ..++.++.++.+... ...
T Consensus 23 ~~gk~~vll~F~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (143)
T 2lus_A 23 LKDKDIIGFYFSAHWCPPCRGFTPIL---ADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASN 99 (143)
Confidence 3577 999999999999999875433 1222222 135566666655332 135
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRS 154 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~ 154 (342)
++..|++..+|+++||++ +|+++.+
T Consensus 100 ~~~~~~v~~~P~~~lid~-~G~i~~~ 124 (143)
T 2lus_A 100 VTAKYGITGIPALVIVKK-DGTLISM 124 (143)
Confidence 778899999999999997 6887765
No 195
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=97.34 E-value=0.002 Score=57.05 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=63.2
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC--------C-hhHHHHHH------hCCCC----
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD--------T-SEGKKVCT------YYKLD---- 136 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~--------s-~eg~~~~~------~y~v~---- 136 (342)
=.||++||||..+||.+|..+.. | +.-..+|-...|.+++++.+ + .+...+++ .|++.
T Consensus 54 ~~GKvvll~FwAt~C~~c~e~p~--L-~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll 130 (215)
T 2i3y_A 54 YVGKHILFVNVATYCGLTAQYPE--L-NALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLF 130 (215)
T ss_dssp GTTSEEEEEEECSSSGGGGGHHH--H-HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEB
T ss_pred hCCCEEEEEEeCCCCCChHhHHH--H-HHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeE
Confidence 46899999999999999975531 1 11111222345777777643 1 22344554 44321
Q ss_pred ---------------------------------------------CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 137 ---------------------------------------------SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 137 ---------------------------------------------~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
..|+.+|||+ .|+++.++.|.++++++...|...
T Consensus 131 ~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~-~G~vv~~~~g~~~~~~l~~~I~~l 209 (215)
T 2i3y_A 131 EKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGP-DGIPVMRWSHRATVSSVKTDILAY 209 (215)
T ss_dssp CCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHHHHH
T ss_pred eeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 0167899996 799999999999999988888877
Q ss_pred hhc
Q 019378 172 MDG 174 (342)
Q Consensus 172 l~~ 174 (342)
+..
T Consensus 210 l~~ 212 (215)
T 2i3y_A 210 LKQ 212 (215)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
No 196
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=97.31 E-value=0.0023 Score=56.33 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=29.8
Q ss_pred cEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 139 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 139 P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
|+.+|||+ .|.++.++.|.++++++...|...+..
T Consensus 160 ~ttflID~-~G~i~~~~~g~~~~~~l~~~I~~ll~~ 194 (207)
T 2r37_A 160 FEKFLVGP-DGIPIMRWHHRTTVSNVKMDILSYMRR 194 (207)
T ss_dssp TCEEEECT-TSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 68899996 799999999999999988888777753
No 197
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=97.29 E-value=0.0015 Score=54.51 Aligned_cols=89 Identities=10% Similarity=0.080 Sum_probs=63.6
Q ss_pred cCCeEEEEEecCC-CcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh---------------------HHHHHHh
Q 019378 77 QDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE---------------------GKKVCTY 132 (342)
Q Consensus 77 ~~K~LlV~l~~~~-~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e---------------------g~~~~~~ 132 (342)
.+|+++|+|..+| |..|..... .+.++.+ .++.++.++.++++ ...++..
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~~------~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 116 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQTR------RFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEA 116 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTHH------HHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHH
T ss_pred CCCeEEEEEecCCCCCchHHHHH------HHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHH
Confidence 5899999999998 999987643 3333322 56777777766532 2356778
Q ss_pred CCCCC------CcEEEEEeCCCCceEEEEeCC-----CChHHHHHHHHhhh
Q 019378 133 YKLDS------IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVPFM 172 (342)
Q Consensus 133 y~v~~------~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L~~~l 172 (342)
|++.. +|+++|||+ +|.++.++.|. .+.+++++.|...+
T Consensus 117 ~~v~~~~~g~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 117 FGVYIKELRLLARSVFVLDE-NGKVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp TTCBBTTTCSBCCEEEEECT-TSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred hCCccccCCceeeEEEEEcC-CCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 88865 499999997 79999888763 24578888777654
No 198
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=97.29 E-value=0.0015 Score=59.39 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=72.5
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEe--cCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCC---hhHHHHHHhC
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQ--STKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT---SEGKKVCTYY 133 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~--~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s---~eg~~~~~~y 133 (342)
+-..+|++.+ ..++++||.|+ .+||. |. .+| +.+..-+. .++++..+|++. .+...++..|
T Consensus 21 Lt~~nF~~vi----~~~~~vlV~Fy~~ApWCg----l~-P~~--e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~ 89 (248)
T 2c0g_A 21 LDELSFEKTV----ERFPYSVVKFDIASPYGE----KH-EAF--TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY 89 (248)
T ss_dssp CCTTTHHHHH----TTSSEEEEEEEESSCCSH----HH-HHH--HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred CCHHHHHHHH----hcCCCEEEEEECCCCCCc----cH-HHH--HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh
Confidence 3456888855 56789999999 99997 32 222 23444442 479999999876 3367799999
Q ss_pred CCC--CCcEEEEEeCCCCce--EEEE--eCCCChHHHHHHHHhhhh
Q 019378 134 KLD--SIPVVLVVDPITGQK--MRSW--CGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 134 ~v~--~~P~l~ii~p~tG~~--l~~~--~G~~~~~~~l~~L~~~l~ 173 (342)
+|. +||++.++. |+. ...+ .|..+.+.|...|...+.
T Consensus 90 ~V~~~~~PTl~~F~---G~~~~~~~y~~~G~~~~~~L~~fi~~~~~ 132 (248)
T 2c0g_A 90 KVDDKNFPSIFLFK---GNADEYVQLPSHVDVTLDNLKAFVSANTP 132 (248)
T ss_dssp TCCTTSCCEEEEES---SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred CCCcCCCCeEEEEe---CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence 999 999999985 552 4566 798999999888877665
No 199
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=97.28 E-value=0.0016 Score=58.78 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=71.6
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEec--CCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCC---hhHHHHHHhCCC
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQS--TKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDT---SEGKKVCTYYKL 135 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~--~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s---~eg~~~~~~y~v 135 (342)
-..+|++.+ ..++++||+|+. +||. |. .+| +.+...+. .++++..+|++. .+...++..|+|
T Consensus 11 t~~nF~~~i----~~~~~vlV~FyA~~pWCg----l~-P~~--e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V 79 (240)
T 2qc7_A 11 DTVTFYKVI----PKSKFVLVKFDTQYPYGE----KQ-DEF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL 79 (240)
T ss_dssp CTTHHHHHG----GGCSEEEEEECCSSCCSH----HH-HHH--HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred CHHHHHHHH----cCCCCEEEEEeCCCCCCc----ch-HHH--HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence 456777765 467999999999 9987 32 222 23444443 469999999764 345779999999
Q ss_pred C--CCcEEEEEeCCCCc--eEEEEeCCCChHHHHHHHHhhh
Q 019378 136 D--SIPVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 136 ~--~~P~l~ii~p~tG~--~l~~~~G~~~~~~~l~~L~~~l 172 (342)
. +||++.++. .|+ .+..+.|..+.+.|+..|....
T Consensus 80 ~~~~~PTl~~f~--~G~~~~~~~y~G~~~~~~L~~fi~~~~ 118 (240)
T 2qc7_A 80 DKESYPVFYLFR--DGDFENPVPYTGAVKVGAIQRWLKGQG 118 (240)
T ss_dssp CGGGCSEEEEEE--TTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEe--CCCcCcceeecCCCCHHHHHHHHHHhc
Confidence 9 999999996 466 3567889999998888777664
No 200
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.22 E-value=0.0013 Score=51.58 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=59.5
Q ss_pred CCCCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-
Q 019378 255 EEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA- 333 (342)
Q Consensus 255 ~EP~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~- 333 (342)
+||..+.....+|.||..+|+.+.-.+..++||..|..-|... .+.+....+|+.. .+. | +.+.||.++|+.
T Consensus 14 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~ 86 (106)
T 1ttn_A 14 PEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA-EGVEPGSQRWFFS--GRP--L--TDKMKFEELKIPK 86 (106)
T ss_dssp -------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHT-TCCCSTTCEEEET--TEE--C--CTTSHHHHCCCSS
T ss_pred CCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-HCcCcccEEEEEC--CEE--C--CCCCcHHHcCCCC
Confidence 5565555677899999999999999999999999999999875 4667777888754 442 4 458999999998
Q ss_pred CceEEEEe
Q 019378 334 NAMISVTW 341 (342)
Q Consensus 334 ~~~l~v~w 341 (342)
+++|++..
T Consensus 87 g~ti~lv~ 94 (106)
T 1ttn_A 87 DYVVQVIV 94 (106)
T ss_dssp SCEEEEEC
T ss_pred CCEEEEEE
Confidence 57777654
No 201
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=97.20 E-value=0.002 Score=54.41 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=60.9
Q ss_pred cCCeEEEEEecCCCc-chhhhhhcccCCHHHHHHHh---ccEEEEEeecC-----------------------------C
Q 019378 77 QDKWLLVNLQSTKEF-SSHMLNRDTWANEAVSQTIS---TNFIFWQVYDD-----------------------------T 123 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~-~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~-----------------------------s 123 (342)
.+||+||+|..+||. .|......+ .++.+-+. .++.++.+..+ .
T Consensus 27 ~Gk~vll~F~~t~C~~~C~~~~~~l---~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~ 103 (170)
T 3me7_A 27 KGKPIILSPIYTHCRAACPLITKSL---LKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTS 103 (170)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHHH---HTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSH
T ss_pred CCCEEEEEEECCCCCchhHHHHHHH---HHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCH
Confidence 489999999999997 486543211 01111121 23444444332 1
Q ss_pred hhHHHHHHhCCC---------CCCcEEEEEeCCCCceEEEEeCC-CChHHHHHHHHhhhhcC
Q 019378 124 SEGKKVCTYYKL---------DSIPVVLVVDPITGQKMRSWCGM-VQPESLLEDLVPFMDGG 175 (342)
Q Consensus 124 ~eg~~~~~~y~v---------~~~P~l~ii~p~tG~~l~~~~G~-~~~~~~l~~L~~~l~~~ 175 (342)
.+...+++.|++ ...|+++|||| .|.++..+.|. .++++++..|.......
T Consensus 104 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~-~G~i~~~~~g~~~~~~~i~~~l~~~~~~~ 164 (170)
T 3me7_A 104 EDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP-ELQIKDYIYGVNYNYLEFVNALRLARGEG 164 (170)
T ss_dssp HHHHHHHHHTTCCCEEETTEEECCCEEEEECT-TSBEEEEEESSSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHCCeEEecCCCccccCceEEEECC-CCeEEEEEeCCCCCHHHHHHHHHHhhccc
Confidence 233456666553 44689999998 79999888885 68899998888877654
No 202
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=97.19 E-value=0.0032 Score=55.29 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=66.8
Q ss_pred ccHHHHHHHHH--HcCCeEEEEEe-----cCCCcchhhhhhcccCCHHHHHHH--hccEEEEEeecCChhHHHHHHhCCC
Q 019378 65 GSFEKAKDAAS--VQDKWLLVNLQ-----STKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKL 135 (342)
Q Consensus 65 gs~~eA~~~Ak--~~~K~LlV~l~-----~~~~~~~~~f~rdvl~~~~V~~~i--~~~FV~w~~~~~s~eg~~~~~~y~v 135 (342)
+.-.+.++..- +..++++|.+. .+||..|+.|... | .++..-+ ..++.+..+|.+. ...++..|+|
T Consensus 5 ~~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~-~--~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~v 79 (229)
T 2ywm_A 5 LDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKE-T--VEVIGEAVGQDKIKLDIYSPFT--HKEETEKYGV 79 (229)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHH-H--HHHHHHHHCTTTEEEEEECTTT--CHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHH-H--HHHHhccCCCCceEEEEecCcc--cHHHHHHcCC
Confidence 33344444433 45567766666 4556666666533 1 1222222 4678887776653 5779999999
Q ss_pred CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.+||++.++. .|....++.|..+.++|...+...+.
T Consensus 80 ~~~Ptl~~~~--~~~~~~~~~G~~~~~~l~~~~~~~~~ 115 (229)
T 2ywm_A 80 DRVPTIVIEG--DKDYGIRYIGLPAGLEFTTLINGIFH 115 (229)
T ss_dssp CBSSEEEEES--SSCCCEEEESCCCTTHHHHHHHHHHH
T ss_pred CcCcEEEEEC--CCcccceecCCccHHHHHHHHHHHHh
Confidence 9999999995 46667788898888888777666654
No 203
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.15 E-value=0.0004 Score=52.03 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=55.5
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
..|+||-|+|..... ...++++.+|++-|...+ +.....+.|..++|++. .+..+.+.||+++||. +.+|.|
T Consensus 5 m~lRvrs~~G~~Ri~-v~~~~t~~~L~~~I~~~~-~i~~~~~~l~~~~~p~~-~l~~~~~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 5 IIIRVQSPDGVKRIT-ATKRETAATFLKKVAKEF-GFQNNGFSVYINRNKTG-EITASSSKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCEEECSSEEEECC-CCSSCCHHHHHHHHHHHT-CCCTTTCCCCCSCCGGG-GSSSCCCCTTTTTCCCTTCCEEC
T ss_pred EEEEEECCCCCEEEE-cCCcChHHHHHHHHHHHc-CCCCCcceEEecCCCCC-cccCCCCCCHHHcCCCCCCEEEE
Confidence 569999999974333 678899999999998876 44567888998999843 3444579999999998 455554
No 204
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=97.12 E-value=0.0013 Score=55.80 Aligned_cols=74 Identities=11% Similarity=0.060 Sum_probs=54.6
Q ss_pred cCCeEEEEEecCC-CcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH--------------------HHHHHhCC
Q 019378 77 QDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--------------------KKVCTYYK 134 (342)
Q Consensus 77 ~~K~LlV~l~~~~-~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg--------------------~~~~~~y~ 134 (342)
.+|++||+|...| |..|.... +.+.++.+ .++.++.++.++++. ..+++.|+
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~------~~l~~l~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 116 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSV------RTFDERAAASGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYG 116 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHH------HHHHHHHHHTTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTT
T ss_pred CCCEEEEEEEeCCCCchHHHHH------HHHHHHHhhcCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhC
Confidence 4799999999988 99998754 34444443 567777777775542 23667888
Q ss_pred CCCC---------cEEEEEeCCCCceEEEEeC
Q 019378 135 LDSI---------PVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 135 v~~~---------P~l~ii~p~tG~~l~~~~G 157 (342)
+... |+++|||+ +|+++..+.|
T Consensus 117 v~~~~~~~~g~~~p~~~lid~-~G~I~~~~~g 147 (175)
T 1xvq_A 117 VTIADGPMAGLLARAIVVIGA-DGNVAYTELV 147 (175)
T ss_dssp CBBCSSTTTTSBCSEEEEECT-TSBEEEEEEC
T ss_pred CcccccccCCcccceEEEECC-CCeEEEEEEC
Confidence 8665 99999997 7999988864
No 205
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=97.11 E-value=0.0014 Score=59.49 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=65.2
Q ss_pred cCCeE-EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HHHH
Q 019378 77 QDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVC 130 (342)
Q Consensus 77 ~~K~L-lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~~~ 130 (342)
.+||+ |+++..++|+.|......+ +....+|-..++.++++++++.+. ..++
T Consensus 32 ~GK~vVL~~fpa~~CpvC~tEl~~l--~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia 109 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTTEFVSF--ARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA 109 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHH
T ss_pred CCCEEEEEEEcCCCCcChHHHHHHH--HHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHH
Confidence 67885 5577889999998764221 111222334579999999887542 2466
Q ss_pred HhCCCC-------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378 131 TYYKLD-------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 172 (342)
Q Consensus 131 ~~y~v~-------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l 172 (342)
..|++. .+|.++|||| .|.++..+.|.. +.++++..|....
T Consensus 110 ~~ygv~~~~~g~~~~p~~fIID~-dG~I~~~~~~~~~~gr~~~Ellr~I~alq 161 (249)
T 3a2v_A 110 RRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPMELGRLVDEILRIVKALK 161 (249)
T ss_dssp HHHTCCCTTCSSSCCEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHhCCccccCCCcccceEEEECC-CCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence 788886 8999999998 789888877754 5788887776554
No 206
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=97.05 E-value=0.0024 Score=49.30 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=57.0
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC 156 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~ 156 (342)
..++.+|+++.+||..|+.+.. +|. -+..++-+..+|+++++...++..|+ .++|++. + +|+.+ .+
T Consensus 14 ~~~~~v~~f~~~~C~~C~~~~~-~L~------~l~~~i~~~~vdi~~~~~~el~~~~g-~~vP~l~-~---~g~~~-~~- 79 (100)
T 1wjk_A 14 RALPVLTLFTKAPCPLCDEAKE-VLQ------PYKDRFILQEVDITLPENSTWYERYK-FDIPVFH-L---NGQFL-MM- 79 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHH-HTS------TTSSSSEEEEEETTSSTTHHHHHHSS-SSCSEEE-E---SSSEE-EE-
T ss_pred CCCCEEEEEeCCCCcchHHHHH-HHH------HhhhCCeEEEEECCCcchHHHHHHHC-CCCCEEE-E---CCEEE-Ee-
Confidence 3466788899999999999853 222 11234566677887556678899999 9999763 4 46654 33
Q ss_pred CCCChHHHHHHHHhhhh
Q 019378 157 GMVQPESLLEDLVPFMD 173 (342)
Q Consensus 157 G~~~~~~~l~~L~~~l~ 173 (342)
|..+++.+...|..+++
T Consensus 80 ~g~~~~~l~~~l~~~~~ 96 (100)
T 1wjk_A 80 HRVNTSKLEKQLRKLSG 96 (100)
T ss_dssp SSCCHHHHHHHHHSSSC
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 45788887776665543
No 207
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.03 E-value=0.0036 Score=48.79 Aligned_cols=72 Identities=19% Similarity=0.115 Sum_probs=59.6
Q ss_pred CCCeeEEEEECCC----CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-Cc
Q 019378 261 RSLLCRVGVRLPD----GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NA 335 (342)
Q Consensus 261 ~~~~~~i~iRlP~----G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~ 335 (342)
..+.++|.||+|+ |+.+.-....++||..|-.-|... .+.++...+|+.+ .+. | +.+.||.+.|+. ++
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k-~gip~~qQrLI~~--GKi--L--~D~~TL~~y~I~~gs 84 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAET-FGLQENYIKIVIN--KKQ--L--QLGKTLEEQGVAHNV 84 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHH-TTCCSTTCEEEET--TEE--C--CTTSBHHHHTCCSSE
T ss_pred hcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHH-HCcCHHHeEEEeC--CeE--C--CCCCcHHHcCCCCCC
Confidence 3578999999999 879999999999999999999886 4777888899855 553 5 568999999999 45
Q ss_pred eEEE
Q 019378 336 MISV 339 (342)
Q Consensus 336 ~l~v 339 (342)
+|+|
T Consensus 85 ti~v 88 (100)
T 1wju_A 85 KAMV 88 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5644
No 208
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=97.02 E-value=0.0018 Score=53.93 Aligned_cols=90 Identities=11% Similarity=0.136 Sum_probs=55.1
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HHHHhCCCC
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KVCTYYKLD 136 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~~~~y~v~ 136 (342)
.+|+++|+|+ .+||..|..-...+ .....++-..+++++.++.++++.. .+++.|++.
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~e~~~l--~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~ 106 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTKEMCTF--RDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVA 106 (157)
T ss_dssp TTSCEEEEECSCTTCCC------CC--SCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCE
T ss_pred CCCeEEEEecCCCCCCccccchhhc--ccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCc
Confidence 5899999998 89999997643322 1122234445788888888876653 234455542
Q ss_pred -----------CCcEEEEEeCCCCceEEEEeCC-----CChHHHHHHHH
Q 019378 137 -----------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLV 169 (342)
Q Consensus 137 -----------~~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L~ 169 (342)
..|+++|||+ .|.++..+.|. .+.++++..|.
T Consensus 107 ~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~ 154 (157)
T 4g2e_A 107 WEFPALPGYVLAKRAVFVIDK-EGKVRYKWVSDDPTKEPPYDEIEKVVK 154 (157)
T ss_dssp EECTTSTTCEEECEEEEEECT-TSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred cccccCCCcceeeeeEEEECC-CCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 3578899997 78888776542 34566665553
No 209
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=97.01 E-value=0.00098 Score=52.15 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh---HHHHHHhCCCCCCcEEEEEe
Q 019378 69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE---GKKVCTYYKLDSIPVVLVVD 145 (342)
Q Consensus 69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e---g~~~~~~y~v~~~P~l~ii~ 145 (342)
+.+....+ ++.++| |+.+||.+|+.+.. +.+-+...|.++.++.+... ...++..|++.++|++ ++
T Consensus 11 ~~~~~~~~-~~~vv~-f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~-~~- 79 (116)
T 2e7p_A 11 KKAKELAS-SAPVVV-FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNV-FI- 79 (116)
T ss_dssp HHHHHHHT-SSSEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EE-
T ss_pred HHHHHHHc-CCCEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEE-EE-
Confidence 33444443 456666 89999999998853 22223445777666554421 1457889999999999 55
Q ss_pred CCCCceEEEEeCCC---ChHHHHHHHH
Q 019378 146 PITGQKMRSWCGMV---QPESLLEDLV 169 (342)
Q Consensus 146 p~tG~~l~~~~G~~---~~~~~l~~L~ 169 (342)
+|+.+..+.|.. +.+.|...|.
T Consensus 80 --~g~~v~~~~~~~~~~~~~~l~~~l~ 104 (116)
T 2e7p_A 80 --GGKQIGGCDTVVEKHQRNELLPLLQ 104 (116)
T ss_dssp --TTEEEECHHHHHHHHHTTCHHHHHH
T ss_pred --CCEEECChHHHHHHHhCChHHHHHH
Confidence 477776555533 4444444333
No 210
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=97.01 E-value=0.002 Score=54.23 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=63.1
Q ss_pred HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HHHHhCCC
Q 019378 76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KVCTYYKL 135 (342)
Q Consensus 76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~~~~y~v 135 (342)
.++||++|+|+ .+||..|..-...+- +...++-..++.++.++.++++.. .+++.|++
T Consensus 31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~--~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv 108 (164)
T 4gqc_A 31 KRGRPAVLIFFPAAFSPVCTKELCTFR--DKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNV 108 (164)
T ss_dssp HTSSCEEEEECSCTTCCEECSSCEESC--CCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred cCCCEEEEEEeCCCCCCCcccchhhhh--hhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCC
Confidence 47899999998 899999975322211 112233445678888888776543 23455655
Q ss_pred C----------CCcEEEEEeCCCCceEEEEeCC-----CChHHHHHHHHhhhh
Q 019378 136 D----------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVPFMD 173 (342)
Q Consensus 136 ~----------~~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L~~~l~ 173 (342)
. ..|+++|||+ +|.+...+.|. .+.++++..|.....
T Consensus 109 ~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 109 YHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp EEEEETTEEEEECCEEEEECT-TSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred cccccccCcCCeeeEEEEECC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 2 3688899997 79988776542 367888888776543
No 211
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=97.00 E-value=0.0045 Score=53.03 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=61.2
Q ss_pred cCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-HH----------------------HHh
Q 019378 77 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-KV----------------------CTY 132 (342)
Q Consensus 77 ~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-~~----------------------~~~ 132 (342)
.+|++||+|.. +||..|..-...+ +....++-..++.++.++.++.+.. .+ ++.
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 106 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 106 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHH
T ss_pred CCCeEEEEEECCCCCCccHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHH
Confidence 58999999984 8999998643221 1111222234678888877765432 23 334
Q ss_pred CCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378 133 YKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 172 (342)
Q Consensus 133 y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l 172 (342)
|++. ..|+++|||+ .|.++..+.|.. +.++++..|....
T Consensus 107 ygv~~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~~l~~~l~~l~ 155 (186)
T 1n8j_A 107 FDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQ 155 (186)
T ss_dssp TTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred hCCccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 5553 3699999997 799998887754 4778877776554
No 212
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=96.99 E-value=0.0047 Score=54.78 Aligned_cols=93 Identities=10% Similarity=0.113 Sum_probs=61.8
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV 129 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~ 129 (342)
.+|++||+|. .+||..|..-...+ +....+|-..++.++.++.++.+.. .+
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~ 132 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEIIEF--NKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDI 132 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHH
Confidence 6899999999 99999998653221 0111112224677777777664321 23
Q ss_pred HHhCCC-----CCCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHhhh
Q 019378 130 CTYYKL-----DSIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFM 172 (342)
Q Consensus 130 ~~~y~v-----~~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~~l 172 (342)
+..|++ ..+|+++|||+ .|.++..+.|. .+.++++..|....
T Consensus 133 ~~~ygv~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 133 SKNYNVLYDNSFALRGLFIIDK-NGCVRHQTVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp HHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHcCCcccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 455666 25899999997 79999888774 35678887777654
No 213
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.89 E-value=0.0081 Score=45.47 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=58.5
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+...+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. + +.+.||.++|+. +++|.+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTCBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhhEEEEEC--CeE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 5678999999999999999999999999999998863 666777788764 332 4 457999999998 5677665
No 214
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=96.87 E-value=0.0041 Score=55.59 Aligned_cols=90 Identities=10% Similarity=-0.005 Sum_probs=58.4
Q ss_pred cCCeEEEEEecCC-Ccchh-----hhhhcccCCHHHHHHHhccEEEEEeecCChhH---------------------HHH
Q 019378 77 QDKWLLVNLQSTK-EFSSH-----MLNRDTWANEAVSQTISTNFIFWQVYDDTSEG---------------------KKV 129 (342)
Q Consensus 77 ~~K~LlV~l~~~~-~~~~~-----~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg---------------------~~~ 129 (342)
.+||++|+|+-.| |+.|. .--. .+.+.+ .++.+++++.++++. ..+
T Consensus 47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~------~~~~~~-~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~v 119 (224)
T 3keb_A 47 SHTPKLIVTLLSVDEDEHAGLLLLRETR------RFLDSW-PHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDF 119 (224)
T ss_dssp TTCCEEEEECSCTTCSTTTSHHHHHHHH------HHHTTC-TTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTH
T ss_pred CCCcEEEEEEeCCCCCCCCCCccHHHHH------HHHHHc-CCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHH
Confidence 5789999999776 88888 2111 111111 455666666665433 235
Q ss_pred HHhCCCCC---------CcEEEEEeCCCCceEEEEeC-----CCChHHHHHHHHhhhhc
Q 019378 130 CTYYKLDS---------IPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVPFMDG 174 (342)
Q Consensus 130 ~~~y~v~~---------~P~l~ii~p~tG~~l~~~~G-----~~~~~~~l~~L~~~l~~ 174 (342)
+..|++.. .|+++|||+ .|.+...+.+ ..+.++++..|......
T Consensus 120 ak~yGv~~~~~~~~G~~~p~tfvID~-dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~ 177 (224)
T 3keb_A 120 HKRYGVLITEYPLSGYTSPAIILADA-ANVVHYSERLANTRDFFDFDAIEKLLQEGEQQ 177 (224)
T ss_dssp HHHTTCBCCSTTSTTCBCCEEEEECT-TCBEEEEEECSBTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCccccccccCCccCEEEEEcC-CCEEEEEEecCCCCCCCCHHHHHHHHHHhhhc
Confidence 56677643 699999997 6888876543 35678888888776654
No 215
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=96.86 E-value=0.0047 Score=46.69 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=51.6
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCCh
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP 161 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~ 161 (342)
++.++.+||..|..+.. +.+-+...+ +..+|++.. ..++..|++. +|++.+ .+|+.+. |..++
T Consensus 3 vv~f~a~~C~~C~~~~~-------~L~~~~~~~-~~~vdid~~--~~l~~~~g~~-vPtl~~---~~G~~v~---g~~~~ 65 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVE-------ALAQARAGA-FFSVFIDDD--AALESAYGLR-VPVLRD---PMGRELD---WPFDA 65 (87)
T ss_dssp EEEEECSSCHHHHHHHH-------HHHHTTCCC-EEEEECTTC--HHHHHHHTTT-CSEEEC---TTCCEEE---SCCCH
T ss_pred EEEEECCCCchHHHHHH-------HHHHHHHhh-eEEEECCCC--HHHHHHhCCC-cCeEEE---ECCEEEe---CCCCH
Confidence 67888999999999842 222223322 345677643 3477889997 999987 3588764 88899
Q ss_pred HHHHHHHHhhhhc
Q 019378 162 ESLLEDLVPFMDG 174 (342)
Q Consensus 162 ~~~l~~L~~~l~~ 174 (342)
+.+...|...++.
T Consensus 66 ~~L~~~l~~~~~~ 78 (87)
T 1ttz_A 66 PRLRAWLDAAPHA 78 (87)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHH
Confidence 9888777666553
No 216
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=96.83 E-value=0.0081 Score=52.66 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=62.1
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhHH------------------------
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEGK------------------------ 127 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg~------------------------ 127 (342)
.+||+||+|+ .+||..|..-. +.+.++. ..++.++.++.++.+..
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~------~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~ 120 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEI------IAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDL 120 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECT
T ss_pred CCCeEEEEEECCCCCCCCHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECC
Confidence 6899999999 99999998643 2233322 24677777777765431
Q ss_pred --HHHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378 128 --KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 172 (342)
Q Consensus 128 --~~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l 172 (342)
.+++.|++. .+|+++|||+ +|.++..+.|.. +.++++..|....
T Consensus 121 ~~~~~~~ygv~~~~~g~~~p~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~ 176 (211)
T 2pn8_A 121 THQISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQAFQ 176 (211)
T ss_dssp TSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred chHHHHHcCCcccCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 234456663 5899999997 799988887643 5678887776654
No 217
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=96.81 E-value=0.008 Score=51.03 Aligned_cols=92 Identities=16% Similarity=0.276 Sum_probs=59.0
Q ss_pred HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HHHHhCCC
Q 019378 76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KVCTYYKL 135 (342)
Q Consensus 76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~~~~y~v 135 (342)
-.+||++|+|. ..||..|..-...+ .....++-..++.++.+..++.+.. .++..|++
T Consensus 49 ~~Gk~vvl~f~~~~~c~~C~~el~~l--~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv 126 (179)
T 3ixr_A 49 YTNQWLVLYFYPKDNTPGSSTEGLEF--NLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDV 126 (179)
T ss_dssp GTTSEEEEEECSCTTSHHHHHHHHHH--HHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTC
T ss_pred HCCCCEEEEEEcCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCC
Confidence 35899999998 88999998643221 1111222234688888888876542 23456666
Q ss_pred C------------CCcEEEEEeCCCCceEEEEeCCC---ChHHHHHHHHh
Q 019378 136 D------------SIPVVLVVDPITGQKMRSWCGMV---QPESLLEDLVP 170 (342)
Q Consensus 136 ~------------~~P~l~ii~p~tG~~l~~~~G~~---~~~~~l~~L~~ 170 (342)
. ..|+++|||+ .|.++..+.|.. ..++++..|..
T Consensus 127 ~~~~~~~g~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~il~~l~~ 175 (179)
T 3ixr_A 127 IKEKTMYGRQVIGIERSTFLIGP-THRIVEAWRQVKVPGHAEEVLNKLKA 175 (179)
T ss_dssp EEEECCC--CEEEECCEEEEECT-TSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred cccccccCcccCCcceEEEEECC-CCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 3 2589999998 799988886632 23455555544
No 218
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=96.77 E-value=0.013 Score=49.02 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=55.5
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHH-HHH-------------------HhC
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGK-KVC-------------------TYY 133 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~-~~~-------------------~~y 133 (342)
.+||++|+|. ..||..|..-. +.+.++.. .++.++.+..++++.. +++ +.|
T Consensus 46 ~gk~vvl~f~~~~~C~~C~~~~------~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 119 (171)
T 2yzh_A 46 KDVVQVIITVPSLDTPVCETET------KKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDMEKY 119 (171)
T ss_dssp CSSEEEEEECSCTTSHHHHHHH------HHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGGGGG
T ss_pred CCCeEEEEEECCCCCCchHHHH------HHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcHHHh
Confidence 4789999998 78999997643 22222222 3455555555544321 222 344
Q ss_pred CCC---------CCcEEEEEeCCCCceEEEEeC-----CCChHHHHHHHHhh
Q 019378 134 KLD---------SIPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVPF 171 (342)
Q Consensus 134 ~v~---------~~P~l~ii~p~tG~~l~~~~G-----~~~~~~~l~~L~~~ 171 (342)
++. ..|+++|||+ .|.++..+.| ..+++++++.|...
T Consensus 120 gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 120 GVLIGEGALKGILARAVFIIDK-EGKVAYVQLVPEITEEPNYDEVVNKVKEL 170 (171)
T ss_dssp TCBBCSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred CCEecccccCCceeeEEEEEcC-CCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence 442 2599999997 7899888765 34578888877654
No 219
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=96.76 E-value=0.0089 Score=49.34 Aligned_cols=93 Identities=4% Similarity=0.052 Sum_probs=58.8
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------HHHHHhCCCC
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------KKVCTYYKLD 136 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------~~~~~~y~v~ 136 (342)
++++++|+|. ..||..|......+ +....++-... .++.++.++++. ..++..|++.
T Consensus 34 k~~~vvl~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 110 (159)
T 2a4v_A 34 NNRVVVFFVYPRASTPGSTRQASGF--RDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAK 110 (159)
T ss_dssp HCSEEEEEECSSSSSHHHHHHHHHH--HHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCB
T ss_pred CCCeEEEEEcCCCCCCCHHHHHHHH--HHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 3458999986 78999998643221 01111122234 555556665442 2355678888
Q ss_pred CCc------EEEEEeCCCCceEEEEeCCCC---hHHHHHHHHhhhhc
Q 019378 137 SIP------VVLVVDPITGQKMRSWCGMVQ---PESLLEDLVPFMDG 174 (342)
Q Consensus 137 ~~P------~l~ii~p~tG~~l~~~~G~~~---~~~~l~~L~~~l~~ 174 (342)
..| +.+|| + +|.++..+.|... .+.+++.|...++.
T Consensus 111 ~~p~~g~~~~~~li-~-~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~ 155 (159)
T 2a4v_A 111 KTPLSGSIRSHFIF-V-DGKLKFKRVKISPEVSVNDAKKEVLEVAEK 155 (159)
T ss_dssp SSSSSCBCCEEEEE-E-TTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCccceEEEE-c-CCEEEEEEccCCccccHHHHHHHHHHHHHH
Confidence 777 77888 6 7999999988643 36677777776653
No 220
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=96.73 E-value=0.011 Score=44.44 Aligned_cols=73 Identities=11% Similarity=0.017 Sum_probs=58.5
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEe
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 341 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w 341 (342)
+...+|.||..+|+.+.-.+..++||..|-..|.... +.+...-+|+.. .+. | +.+.||.++|+.+++|++..
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrLi~~--Gk~--L--~d~~tL~~~~i~g~~i~l~~ 75 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GRV--L--QDDKKLQEYNVGGKVIHLVE 75 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBGGGGTCTTEEEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CeE--C--CCCCCHHHcCCCCcEEEEEe
Confidence 4578999999999999999999999999999998763 666777888763 332 4 45899999999656776653
No 221
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=96.71 E-value=0.0055 Score=54.98 Aligned_cols=92 Identities=5% Similarity=-0.020 Sum_probs=61.3
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecC------------------------------
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDD------------------------------ 122 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~------------------------------ 122 (342)
...|..++.|.+.+|..|..|... +..+++. .|++..+...
T Consensus 95 ~~ak~~v~~F~D~~Cp~C~~~~~~------l~~~~~~g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~ 168 (241)
T 1v58_A 95 KDAPVIVYVFADPFCPYCKQFWQQ------ARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGK 168 (241)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHHH------HHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTC
T ss_pred CCCCeEEEEEECCCChhHHHHHHH------HHHHHhCCcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhcc
Confidence 356888999999999999999653 4556654 2333222110
Q ss_pred ---------Ch-------hHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 123 ---------TS-------EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 123 ---------s~-------eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+. ....+++.|++.++|+++|.+. +|+. .++.|..+++.|...|.....++
T Consensus 169 ~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~-~G~~-~~~~G~~~~~~L~~~l~~~~~~~ 235 (241)
T 1v58_A 169 LKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK-ENTL-QQAVGLPDQKTLNIIMGNKLQHH 235 (241)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET-TTEE-EEEESSCCHHHHHHHTTC-----
T ss_pred CCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CCCE-EEecCCCCHHHHHHHHHHHHHhh
Confidence 11 1134567899999999999875 5754 67889999999988887777654
No 222
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.71 E-value=0.014 Score=42.76 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=57.7
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+...+|.||.++|+.+.-.+..++||..|-.-+... .+.+....+|+.. .+. + +.+.||.++|+. +++|.+.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~-~~i~~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEK-LNVPVRQQRLLFK--GKA--L--ADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHH-TCCCTTTCEEEET--TEE--C--CTTSBGGGGTCCSSBCCEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 456899999999998899999999999999999875 4667778888753 443 4 457999999998 5666654
No 223
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=96.71 E-value=0.0068 Score=57.09 Aligned_cols=111 Identities=12% Similarity=0.184 Sum_probs=76.2
Q ss_pred CCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCC
Q 019378 56 RPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKL 135 (342)
Q Consensus 56 ~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v 135 (342)
.|....+-..++.... ....++++|+|.++||.+|+.+... | ..+.+-++..+.|..+|.+..+...+++.|++
T Consensus 116 ~p~v~~~~~~~~~~~~---~~~~~~~~v~F~~~~~~~~~~~~~~-~--~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi 189 (361)
T 3uem_A 116 LPLVIEFTEQTAPKIF---GGEIKTHILLFLPKSVSDYDGKLSN-F--KTAAESFKGKILFIFIDSDHTDNQRILEFFGL 189 (361)
T ss_dssp SCSEEECSTTTHHHHH---SCSCCEEEEEECCSSSSSHHHHHHH-H--HHHHGGGTTTCEEEEECTTSGGGHHHHHHTTC
T ss_pred CCcceecCcccHHHHh---cCCCCcEEEEEEeCCchhHHHHHHH-H--HHHHHHccCceEEEEecCChHHHHHHHHHcCC
Confidence 3443334455555332 2345677899999999999988522 1 23334445567788888876678889999999
Q ss_pred CC--CcEEEEEeCCCCceEEEEe---CCCChHHHHHHHHhhhhc
Q 019378 136 DS--IPVVLVVDPITGQKMRSWC---GMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 136 ~~--~P~l~ii~p~tG~~l~~~~---G~~~~~~~l~~L~~~l~~ 174 (342)
.. +|++++++. |..+.... |..+++.+...+..+++.
T Consensus 190 ~~~~~P~~~~~~~--~~~~~ky~~~~~~~~~~~l~~fi~~~l~g 231 (361)
T 3uem_A 190 KKEECPAVRLITL--EEEMTKYKPESEELTAERITEFCHRFLEG 231 (361)
T ss_dssp CTTTCSEEEEEEC--C--CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred CccCCccEEEEEc--CCcccccCCCccccCHHHHHHHHHHHhcC
Confidence 87 999999985 23333333 678999998888888764
No 224
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=96.69 E-value=0.012 Score=42.30 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=55.0
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+|.||.++|+.+.-.+..++||..|..-+.... +.+....+|+.. .+. + +.+.||.+.|+. +++|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-~i~~~~q~L~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GKQ--M--NDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999998764 667777888753 442 4 457999999998 5666654
No 225
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=96.69 E-value=0.01 Score=42.68 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=55.4
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
+|.||.++|+.+.-.+..++||.+|-.-+.... +.+....+|+.. .+. + +.+.||.+.|+. +++|.+..
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~-~i~~~~q~L~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTGGGTCCTTCEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEEE
Confidence 688999999999999999999999999998764 666778888763 442 5 448999999998 56676653
No 226
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=96.64 E-value=0.0041 Score=51.96 Aligned_cols=87 Identities=13% Similarity=0.046 Sum_probs=53.9
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhHH---------------------HHHHhC
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGK---------------------KVCTYY 133 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg~---------------------~~~~~y 133 (342)
.+|+++|+|. +.||..|..-. +.+.++.. .++.++.++.++++.. .++..|
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~~~------~~l~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~ 118 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQQT------RKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENY 118 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHHHH------HHHHHHSCTTTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHH
T ss_pred CCCcEEEEEECCCCCCccHHHH------HHHHHHhhcCCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHh
Confidence 4788888888 67888886532 23333332 3455555555543321 344556
Q ss_pred CCCC------CcEEEEEeCCCCceEEEEeC-----CCChHHHHHHHHh
Q 019378 134 KLDS------IPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVP 170 (342)
Q Consensus 134 ~v~~------~P~l~ii~p~tG~~l~~~~G-----~~~~~~~l~~L~~ 170 (342)
++.. .|+++|||+ .|.++..+.+ ..+.+++++.|..
T Consensus 119 gv~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 119 GVVMEELRLLARAVFVLDA-DNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp TCEETTTTEECCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred CCccccCCceeeEEEEECC-CCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 6643 799999997 7998887544 2345777776653
No 227
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.64 E-value=0.01 Score=43.79 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=56.9
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..+|.||.++|+.+.-.+..++||.+|-.-+.... +.+....+|+. ..+. | +.+.||.++|+. +++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~qrL~~--~g~~--L--~d~~tL~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKWSTLFLL 73 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChHHEEEEE--CCEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 47899999999999999999999999999998864 66777788875 3443 4 457999999998 5667664
No 228
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=96.64 E-value=0.016 Score=48.85 Aligned_cols=35 Identities=17% Similarity=0.422 Sum_probs=27.2
Q ss_pred CCcEEEEEeCCCCceEEEEeCC--CChHHHHHHHHhhh
Q 019378 137 SIPVVLVVDPITGQKMRSWCGM--VQPESLLEDLVPFM 172 (342)
Q Consensus 137 ~~P~l~ii~p~tG~~l~~~~G~--~~~~~~l~~L~~~l 172 (342)
..|+++|||| .|.++..+.|. .+.+++++.|...+
T Consensus 133 H~~~~~liD~-~G~i~~~~~g~~~~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 133 HGTSFYLIDQ-NGKVMKKYSGISNTPYEDIIRDMKRLA 169 (170)
T ss_dssp CCCEEEEECT-TSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred eeeEEEEEcC-CCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence 3478999998 79999999884 45688888877654
No 229
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=96.59 E-value=0.0058 Score=54.87 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=60.7
Q ss_pred cCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhHH------------------------
Q 019378 77 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEGK------------------------ 127 (342)
Q Consensus 77 ~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg~------------------------ 127 (342)
.+||+||+|+. .||..|..-. +.+.++. ..++.++.++.++.+..
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el------~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 149 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEI------IAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDL 149 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHH------HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECT
T ss_pred CCCEEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCc
Confidence 68999999999 9999998643 2333333 24688888888775531
Q ss_pred --HHHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHh
Q 019378 128 --KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 170 (342)
Q Consensus 128 --~~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~ 170 (342)
.++..|++. .+|.++|||+ .|.++.++.|.. +.++++..|..
T Consensus 150 ~~~v~~~ygv~~~~~g~~~p~~flID~-~G~I~~~~~~~~~~~~~~~eil~~l~~ 203 (240)
T 3qpm_A 150 THQISKDYGVYLEDQGHTLRGLFIIDE-KGVLRQITMNDLPVGRSVDETLRLVQA 203 (240)
T ss_dssp TSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred hHHHHHHhCCccccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 244567775 6899999998 799888876633 35666666554
No 230
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.57 E-value=0.014 Score=44.86 Aligned_cols=78 Identities=12% Similarity=0.204 Sum_probs=61.6
Q ss_pred CCeeEEEEECC---CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec---CCCCccccCCCcCCChhhcCCc-C
Q 019378 262 SLLCRVGVRLP---DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA---IPGATKSLDYDSKLTFEDSGLA-N 334 (342)
Q Consensus 262 ~~~~~i~iRlP---~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~---fPr~~~~l~~~~~~Tl~e~gL~-~ 334 (342)
.+.++|.|+.| +|..+.++|..+.||..|-.-|.... |.+....+|.-. .|.....+ .+.+.||...|+. +
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~-gip~~~q~L~~~~~~~~~~~~~L-~~d~~~L~~y~i~~G 84 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLL-KVPVSELLLSYESSKMPGREIEL-ENDLQPLQFYSVENG 84 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTT-TCCTTTCEEEEECTTSCSCEEEC-CCSSSBSGGGTCCTT
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHH-CCChhHeEEEEEcCCCCceeecc-CCCcccHhhcCCCCC
Confidence 56789999986 78899999999999999999998864 666777777643 55443223 4779999999998 5
Q ss_pred ceEEEEe
Q 019378 335 AMISVTW 341 (342)
Q Consensus 335 ~~l~v~w 341 (342)
.+|+|.+
T Consensus 85 ~~I~V~d 91 (97)
T 1wjn_A 85 DCLLVRW 91 (97)
T ss_dssp CEEEEEC
T ss_pred CEEEEEe
Confidence 7788876
No 231
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.57 E-value=0.016 Score=42.82 Aligned_cols=73 Identities=10% Similarity=0.177 Sum_probs=58.1
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc--CCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS 338 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~ 338 (342)
+...+|.||..+|+.+.-.+..++||..|-.-+...+ .+.+....+|+.. .+. | +.+.||.+.|+. +++|+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~ 76 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA--GKI--L--SDDVPIRDYRIDEKNFVV 76 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET--TEE--C--CTTSBGGGGCCCTTSEEE
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC--CEE--C--cCCCCHHHcCCCCCCEEE
Confidence 3468899999999999999999999999999998862 5667778888754 442 4 457999999998 56676
Q ss_pred EE
Q 019378 339 VT 340 (342)
Q Consensus 339 v~ 340 (342)
+.
T Consensus 77 l~ 78 (85)
T 2wyq_A 77 VM 78 (85)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 232
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.56 E-value=0.015 Score=43.36 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=57.7
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
....+|.|+.++|+.+.-.+..++||..|-.-+.... +.+....+|+.. .+ .| +.+.||.+.|+. +++|.+.
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrL~~~--G~--~L--~d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GK--QM--NDEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEET--TE--EC--CTTSBGGGGTCCTTCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcCHHHEEEEEC--Ce--EC--CCCCcHHHcCCCCCCEEEEE
Confidence 4578999999999999999999999999999998764 666777788764 33 24 448999999998 5666654
No 233
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.49 E-value=0.015 Score=44.74 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=58.4
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+...+|.||..+|+.+.-....++||..|..-+... .+.+....+|+.. .+. | ..+.||+++|+. +++|.+.
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~-~gip~~~qrLif~--Gk~--L--~d~~tl~dy~i~~g~~I~l~ 91 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-QGVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEVY 91 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTCEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCChhhEEEEEC--CeE--c--CCCCCHHHCCCCCCCEEEEE
Confidence 457899999999999999999999999999999876 3667778888764 443 4 457999999998 5666654
No 234
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.49 E-value=0.023 Score=41.50 Aligned_cols=71 Identities=23% Similarity=0.249 Sum_probs=57.2
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
..+|.||.++|+.+.-....++||..|-.-+... .+.++...+|+.. .+. + +.+.||.++|+. +++|.+..
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gip~~~qrL~~~--G~~--L--~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhh-cCCCHHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEEE
Confidence 4789999999999989999999999999999875 4667777888764 332 4 458999999998 56776653
No 235
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=96.49 E-value=0.043 Score=48.34 Aligned_cols=120 Identities=10% Similarity=0.106 Sum_probs=75.7
Q ss_pred HHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH
Q 019378 48 RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK 127 (342)
Q Consensus 48 ~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~ 127 (342)
...|-..-..|. +-.-+.+.+........+++++.+.+.+|.+|..+. ..| ..|.+-.+.++.|.-+|.+..+..
T Consensus 103 l~~fi~~~~~pl--v~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~-~~~--~~vAk~~k~~i~F~~vd~~~~~~~ 177 (227)
T 4f9z_D 103 LSRFIEINSLHM--VTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENM-HRY--QKAAKLFQGKILFILVDSGMKENG 177 (227)
T ss_dssp HHHHHHHHCCCS--EEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHH-HHH--HHHHHHTTTTCEEEEEETTSGGGH
T ss_pred HHHHHHHhCCCc--eeecCcccHHHHhccCCceEEEEEEcCCcchHHHHH-HHH--HHHHHHhhCCEEEEEeCCccHhHH
Confidence 444544444333 344455555555444446666667787887787664 223 234555556677776777766666
Q ss_pred HHHHhCCCC--CCcEEEEEeCCCCceEEEE-eCCCChHHHHHHHHhhhh
Q 019378 128 KVCTYYKLD--SIPVVLVVDPITGQKMRSW-CGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 128 ~~~~~y~v~--~~P~l~ii~p~tG~~l~~~-~G~~~~~~~l~~L~~~l~ 173 (342)
.+++.|++. .+|.++|++..++. ...+ .|.++++.+..-+..+++
T Consensus 178 ~~l~~fgl~~~~~P~~~i~~~~~~~-ky~~~~~~~t~~~i~~Fv~~~~~ 225 (227)
T 4f9z_D 178 KVISFFKLKESQLPALAIYQTLDDE-WDTLPTAEVSVEHVQNFCDGFLS 225 (227)
T ss_dssp HHHHHTTCCGGGCSEEEEEESSSCC-EEEETTCCCCHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCCEEEEEECCCCc-cccCCcCCCCHHHHHHHHHHHhC
Confidence 788999997 89999999975432 2333 367888888777766654
No 236
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.48 E-value=0.018 Score=43.24 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=57.0
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..+|.||.++|+.+.-.+..++||..|-.-+... .+.+...-+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--Gk~--L--~D~~tL~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN 74 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHH-TCSCTTTEEEESS--SSC--C--CTTSBHHHHHCSTTCEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHH-hCCChhHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999875 4777778888753 443 4 457999999998 5666654
No 237
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=96.46 E-value=0.019 Score=47.62 Aligned_cols=87 Identities=14% Similarity=0.034 Sum_probs=53.8
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhH---------------------HHHHHh
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCTY 132 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg---------------------~~~~~~ 132 (342)
.+|+++|+|. +.||..|..-.. .+.++.+ .++.++.++.++++. ..++..
T Consensus 41 ~gk~vvl~F~~~~~c~~C~~~~~------~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 114 (163)
T 1psq_A 41 DGKKKVLSVVPSIDTGICSTQTR------RFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRD 114 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHH------HHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHH
T ss_pred CCCEEEEEEECCCCCCccHHHHH------HHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHH
Confidence 5789999998 589999975321 2222222 244455544444322 234455
Q ss_pred CCCC----C--CcEEEEEeCCCCceEEEEeCC-----CChHHHHHHHHh
Q 019378 133 YKLD----S--IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVP 170 (342)
Q Consensus 133 y~v~----~--~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L~~ 170 (342)
|++. . .|+++|||+ .|.++..+.|. .+.+++++.|..
T Consensus 115 ~gv~~~~~g~~~p~~~liD~-~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 115 YALLINEWHLLARAVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp HTCBCTTTCSBCCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred hCCccccCCceEEEEEEEcC-CCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 6654 2 399999997 79999888763 234777776653
No 238
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=96.46 E-value=0.014 Score=51.35 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=59.2
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeec--------------------------------
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYD-------------------------------- 121 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~-------------------------------- 121 (342)
..+|+.+|.|.++||..|+.+... +.++... .+++..+..
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~------l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~ 157 (216)
T 1eej_A 84 PQEKHVITVFTDITCGYCHKLHEQ------MADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS 157 (216)
T ss_dssp TTCCEEEEEEECTTCHHHHHHHTT------HHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred CCCCEEEEEEECCCCHHHHHHHHH------HHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCC
Confidence 467999999999999999999654 4455543 233332221
Q ss_pred --------CChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 122 --------DTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 122 --------~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.-.+...+++.|++.++|+++|.+ |. .+.|..++++|...|.....
T Consensus 158 ~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~d---G~---~~~G~~~~~~l~~~l~~~~~ 211 (216)
T 1eej_A 158 VAPASCDVDIADHYALGVQLGVSGTPAVVLSN---GT---LVPGYQPPKEMKEFLDEHQK 211 (216)
T ss_dssp CCCCCCSCCHHHHHHHHHHHTCCSSSEEECTT---SC---EEESCCCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCCCccCEEEEcC---Ce---EecCCCCHHHHHHHHHHhhh
Confidence 112334577899999999995533 54 56799999998887776543
No 239
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.45 E-value=0.023 Score=42.22 Aligned_cols=72 Identities=22% Similarity=0.156 Sum_probs=58.2
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+...+|.||.++|+.+.-.+..++||.+|-.-+... .+.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~~--Gk~--L--~d~~tL~~~~i~~g~~i~l~ 77 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQ-QGLPKKQQQLEFQ--GQV--L--QDWLGLGIYGIQDSDTLILS 77 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHH-TCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHH-hCCChHHEEEEEC--CEE--c--cCCCCHHHCCCCCCCEEEEE
Confidence 356899999999999999999999999999999886 4667788888753 432 4 457999999998 5666665
No 240
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.41 E-value=0.017 Score=41.78 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=54.7
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
.+|.||. +|+.+.-.+..++||..|..-+.... +.+....+|+.. .+. + +.+.||++.|+. +++|.+..
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~-~i~~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIYS--GKI--L--KDDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHh-CCCHHHEEEEEC--CeE--c--CCCCCHHHcCCCCCCEEEEEE
Confidence 6788888 99999999999999999999998764 667778888753 443 4 447999999998 56676653
No 241
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.34 E-value=0.027 Score=42.96 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=55.5
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhc--CCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+|.||.++|+.+.-.+..++||.+|-.-|.... .+.+....+|+.. .+. | +.+.||.+.|+. +++|.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~g~~i~l~ 73 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA--GKI--L--NDDTALKEYKIDEKNFVVVM 73 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET--TEE--C--CTTSBGGGGTCCSSSEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 688999999999999999999999999998863 4677788888753 443 5 447999999998 5666554
No 242
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=96.32 E-value=0.021 Score=43.72 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=54.9
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+|.||.++|+.+.-.+..++||..|-.-|... .+.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-~gi~~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-TCCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcChhhEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 68899999999999999999999999999876 4667778888754 443 5 448999999998 5666654
No 243
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.32 E-value=0.026 Score=42.16 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=58.4
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEe
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 341 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w 341 (342)
+...+|.||..+|+.+.-.+..++||..|-.-+.... +.+...-+|+.. .+ .+ +.+.||.++|+.+++|++++
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrLi~~--Gk--~L--~D~~tL~~~~i~g~~i~lv~ 87 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GR--VL--QDDKKLQEYNVGGKVIHLVE 87 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TE--EC--CTTSBGGGGTCTTEEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CE--EC--CCCCcHHHcCCCCcEEEEEE
Confidence 4568999999999999899999999999999998763 667777788753 33 24 44899999999667776653
No 244
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=96.29 E-value=0.0065 Score=55.15 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=58.9
Q ss_pred HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------H
Q 019378 76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------K 128 (342)
Q Consensus 76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~ 128 (342)
-.+||+||+|+ .+||+.|..-...+ +....+|-..++.++.++.++.+.. .
T Consensus 89 ~kGK~vvL~F~~a~~cp~C~~el~~l--~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~ 166 (254)
T 3tjj_A 89 YRGKYLVFFFYPLDFTFVCPTEIIAF--GDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQ 166 (254)
T ss_dssp GTTSEEEEEECSCTTCSSCCHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSH
T ss_pred HCCCeEEEEEECCCCCCchHHHHHHH--HHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHH
Confidence 46899999999 88999997643211 1111222234688888888775431 2
Q ss_pred HHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378 129 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV 169 (342)
Q Consensus 129 ~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~ 169 (342)
++..|++. .+|.++|||+ .|.++.++.|.. +.++++..|.
T Consensus 167 va~~ygv~~~~~g~~~p~tflID~-~G~I~~~~~~~~~~~~~~~eil~~L~ 216 (254)
T 3tjj_A 167 ISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQ 216 (254)
T ss_dssp HHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred HHHHcCCccccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 34556663 4799999997 789888776632 4566666554
No 245
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.24 E-value=0.027 Score=43.78 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=60.7
Q ss_pred CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
......|-|+.+.|+.+.-....++||.+|-.-|... .|.+...-+|+.. .+. | +.+.||.+.|+. .++|.+
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k-~Gip~~qQrLi~~--Gk~--L--~D~~TL~dygI~~gstlhL 97 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-TGTRWNKIVLKKW--YTI--F--KDHVSLGDYEIHDGMNLEL 97 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHH-HCCCGGGCEEEET--TEE--C--CSSCBHHHHTCCTTEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCCHHHEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEE
Confidence 3557899999999999999999999999999999886 5777778888754 553 5 558999999998 566776
Q ss_pred Ee
Q 019378 340 TW 341 (342)
Q Consensus 340 ~w 341 (342)
.+
T Consensus 98 ~~ 99 (100)
T 1uh6_A 98 YY 99 (100)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 246
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=96.23 E-value=0.027 Score=47.12 Aligned_cols=85 Identities=8% Similarity=0.044 Sum_probs=60.9
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc----cEEEEEeecCC----------------------------
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDT---------------------------- 123 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~----~FV~w~~~~~s---------------------------- 123 (342)
..+|..+|.|.+.+|..|..+.. .+.+++++ .|++..+.+..
T Consensus 20 ~~a~v~i~~f~d~~Cp~C~~~~~------~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~ 93 (175)
T 3gyk_A 20 PEGDVTVVEFFDYNCPYCRRAMA------EVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMG 93 (175)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHH------HHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCccHHHHHH------HHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 35799999999999999999963 45666552 45555543321
Q ss_pred -------------------------------------hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378 124 -------------------------------------SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLE 166 (342)
Q Consensus 124 -------------------------------------~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~ 166 (342)
....+++..+++.++|+++| +|+ .+.|..+.+.|..
T Consensus 94 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i----~g~---~~~G~~~~~~l~~ 166 (175)
T 3gyk_A 94 MSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV----EDA---LVPGFVEQSQLQD 166 (175)
T ss_dssp CSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE----TTE---EECSCCCHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE----CCE---EeeCCCCHHHHHH
Confidence 11223567889999999986 454 5679999999988
Q ss_pred HHHhhhh
Q 019378 167 DLVPFMD 173 (342)
Q Consensus 167 ~L~~~l~ 173 (342)
.|...+.
T Consensus 167 ~i~~~l~ 173 (175)
T 3gyk_A 167 AVDRARK 173 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877664
No 247
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.023 Score=43.65 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=56.9
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+...+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~l~ 92 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 92 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTCBSGGGTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHh-CCChhHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 4578999999999999999999999999999998763 667777888753 442 4 558999999998 4666654
No 248
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=96.16 E-value=0.033 Score=48.22 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=56.6
Q ss_pred HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHH---------------------HHHH
Q 019378 76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGK---------------------KVCT 131 (342)
Q Consensus 76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~---------------------~~~~ 131 (342)
-.+|+++|+|. +.||..|..-. +.+.++.+ .++.++.++.++.+.. .++.
T Consensus 76 ~~Gk~vvl~F~~~~~c~~C~~e~------~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 149 (200)
T 3zrd_A 76 FAGKRKVLNIFPSIDTGVCAASV------RKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQ 149 (200)
T ss_dssp GTTSEEEEEECSCCCCSCCCHHH------HHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHH
T ss_pred hCCCcEEEEEECCCCCchhHHHH------HHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHH
Confidence 35899999998 67999997643 33344333 4677777777665432 3445
Q ss_pred hCCCC---------CCcEEEEEeCCCCceEEEEeCC-----CChHHHHHHH
Q 019378 132 YYKLD---------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDL 168 (342)
Q Consensus 132 ~y~v~---------~~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L 168 (342)
.|++. ..|+++|||+ .|.++.++.|. .+.+++++.|
T Consensus 150 ~ygv~~~~~~~~g~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~~~l~~L 199 (200)
T 3zrd_A 150 AYGVAITEGPLAGLTARAVVVLDG-QDNVIYSELVNEITTEPNYDAALAAL 199 (200)
T ss_dssp HTTCEECSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred HhCceeecccCCCccccEEEEECC-CCeEEEEEecCCcccCCCHHHHHHhh
Confidence 56653 3699999997 79988876543 3455665544
No 249
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=96.14 E-value=0.0032 Score=58.56 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=57.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC-C-hhHHHHHHhCCCCCCcEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD-T-SEGKKVCTYYKLDSIPVV 141 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~-s-~eg~~~~~~y~v~~~P~l 141 (342)
.+..+.++....++.. +|.|+.+||..|+.+.. +|..-. +.+-...++.. . .+...+++.|++.++|++
T Consensus 185 s~~~~~~la~~l~~~~--vV~F~A~WC~~Ck~l~p-~le~lA------~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~ 255 (291)
T 3kp9_A 185 PSPLAVGLAAHLRQIG--GTMYGAYWCPHCQDQKE-LFGAAF------DQVPYVECSPNGPGTPQAQECTEAGITSYPTW 255 (291)
T ss_dssp CCSTHHHHHHHHHHTT--CEEEECTTCHHHHHHHH-HHGGGG------GGSCEEESCSSCSSSCCCHHHHTTTCCSTTEE
T ss_pred CCHHHHHHHHHhCCCC--EEEEECCCCHHHHHHHH-HHHHHH------HHcCEEEEeecCchhhHHHHHHHcCCcccCeE
Confidence 4555555555544444 68999999999999853 333221 22223344422 2 235678999999999996
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
.+ +|+ .+.|..+.+++.+.+
T Consensus 256 ~i----~G~---~~~G~~~~~~L~~~l 275 (291)
T 3kp9_A 256 II----NGR---TYTGVRSLEALAVAS 275 (291)
T ss_dssp EE----TTE---EEESCCCHHHHHHHT
T ss_pred EE----CCE---EecCCCCHHHHHHHH
Confidence 55 576 388999988876543
No 250
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.10 E-value=0.022 Score=42.00 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=56.2
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..+|.||.++|+.+.-.+..++||.+|-.-+.... +.+....+|+.. .+. + +.+.||.++|+. +++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~ip~~~qrL~~~--g~~--L--~d~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--BEE--C--CTTCBTTTTTCCTTCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCCHHHEEEEEC--CeE--C--CCCCCHHHCCCCCCCEEEEE
Confidence 46899999999999999999999999999998764 667778888864 332 4 457899999998 5667664
No 251
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.05 E-value=0.037 Score=40.33 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=56.1
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..+|.||..+|+.+.-....++||..|..-+... .+.+....+|+.. .+. | +.+.||+++|+. +++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~-~gi~~~~qrL~~~--G~~--L--~d~~tl~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-QGVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEVY 73 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-HCCCcccEEEEEC--CEE--e--CCCCCHHHcCCCCCCEEEEE
Confidence 4689999999999999999999999999998876 4667777888654 543 4 457999999998 5666554
No 252
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.05 E-value=0.038 Score=40.10 Aligned_cols=71 Identities=21% Similarity=0.144 Sum_probs=55.8
Q ss_pred eeEEEEECCCCceE-EEE-eCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRM-QRN-FLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~-~rr-F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..+|.||.++|+.+ .-. +..++||..|-.-+... .+.+....+|+.. .+. + +.+.||.+.|+. +++|.+.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~-~gip~~~qrL~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL-FHVEPGLQRLFYR--GKQ--M--EDGHTLFDYEVRLNDTIQLL 74 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTCBTTTTTCCTTCEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHH-HCcChhhEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 46899999999985 677 99999999999999876 3667777888753 442 4 457999999998 5667665
Q ss_pred e
Q 019378 341 W 341 (342)
Q Consensus 341 w 341 (342)
.
T Consensus 75 ~ 75 (78)
T 2faz_A 75 V 75 (78)
T ss_dssp E
T ss_pred E
Confidence 3
No 253
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=95.97 E-value=0.038 Score=41.92 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=55.5
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
.+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-gip~~~qrL~~~--G~~--L--~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 4789999999999999999999999999998864 667777888753 442 4 457899999998 5666654
No 254
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=95.95 E-value=0.019 Score=47.77 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=47.8
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhH---------------------HHHHHh
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCTY 132 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg---------------------~~~~~~ 132 (342)
.+|+++|+|. +.||..|..-- +.+.++.. .++.++.++.++++. ..++..
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e~------~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 115 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATSV------RKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQ 115 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHHH------HHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHH
T ss_pred CCCeEEEEEECCCCCCccHHHH------HHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHH
Confidence 5789999998 78999997532 22222222 456666665554332 234556
Q ss_pred CCCCC---------CcEEEEEeCCCCceEEEEeC
Q 019378 133 YKLDS---------IPVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 133 y~v~~---------~P~l~ii~p~tG~~l~~~~G 157 (342)
|++.. .|+.+|||+ .|.++..+.|
T Consensus 116 ~gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~ 148 (165)
T 1q98_A 116 LGVDIQTGPLAGLTSRAVIVLDE-QNNVLHSQLV 148 (165)
T ss_dssp TTCEECSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred hCceecccccCCccceeEEEEcC-CCEEEEEEeC
Confidence 66632 499999997 7898888865
No 255
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=95.94 E-value=0.011 Score=55.51 Aligned_cols=87 Identities=10% Similarity=0.186 Sum_probs=60.0
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHH-------------------HHHHhC
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGK-------------------KVCTYY 133 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~-------------------~~~~~y 133 (342)
.|||++|||+ .++++.|.. ++..|-+ +++.+++++.++.+.. .+++.|
T Consensus 23 ~Gk~vvl~F~p~~~tp~C~~---------e~~~~~~~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~y 93 (322)
T 4eo3_A 23 YGKYTILFFFPKAGTSGSTR---------EAVEFSRENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFF 93 (322)
T ss_dssp TTSEEEEEECSSTTSHHHHH---------HHHHHHHSCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHT
T ss_pred CCCeEEEEEECCCCCCCCHH---------HHHHHHHHhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhc
Confidence 5899999998 345555643 2222222 4678888888876653 345678
Q ss_pred CC----CCCcEEEEEeCCCCceEEEEeCCC---ChHHHHHHHHhhhh
Q 019378 134 KL----DSIPVVLVVDPITGQKMRSWCGMV---QPESLLEDLVPFMD 173 (342)
Q Consensus 134 ~v----~~~P~l~ii~p~tG~~l~~~~G~~---~~~~~l~~L~~~l~ 173 (342)
++ ..+|+.+|||+ .|.+.+.|.+.- .++++|..|..+..
T Consensus 94 gv~~~~~~~r~tfiId~-~G~i~~~~~~v~~~~h~~~~l~~~~~~~~ 139 (322)
T 4eo3_A 94 NVLENGKTVRSTFLIDR-WGFVRKEWRRVKVEGHVQEVKEALDRLIE 139 (322)
T ss_dssp TCEETTEECCEEEEECT-TSBEEEEEESCCSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCcCccEEEEECC-CCEEEEEEeCCCccccHHHHHHHHhhhch
Confidence 87 35789999998 799988888742 25777777777764
No 256
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=95.88 E-value=0.058 Score=42.39 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=57.7
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
...+|.||.++|+.+.-.+..++||..|-.-+.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCTTTEEEEET--TEE--C--CSSCBTTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHH-CcCcccEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 468999999999999999999999999999998764 667778888764 332 4 448999999998 5667664
No 257
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.88 E-value=0.079 Score=39.47 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=57.4
Q ss_pred CCeeEEEEECCCC-ceEEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEE
Q 019378 262 SLLCRVGVRLPDG-RRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS 338 (342)
Q Consensus 262 ~~~~~i~iRlP~G-~r~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~ 338 (342)
....+|.||.++| +.+.- .+..++||.+|-.-|... .+.+....+|+.. .+. | +.+.||.++|+. +++|.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~-~gip~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~ 77 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-FDVRPECQRLFYR--GKQ--L--ENGYTLFDYDVGLNDIIQ 77 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-SCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTCEEE
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHH-HCcChhhEEEEEC--CeE--C--CCCCCHHHCCCCCCCEEE
Confidence 3568999999999 67888 599999999999999876 4667778888764 332 4 457999999998 56676
Q ss_pred EEe
Q 019378 339 VTW 341 (342)
Q Consensus 339 v~w 341 (342)
+..
T Consensus 78 l~~ 80 (89)
T 1wy8_A 78 LLV 80 (89)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 258
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.85 E-value=0.061 Score=42.23 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=57.0
Q ss_pred CeeEEEEECC---CCceEEEEeCC-CCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceE
Q 019378 263 LLCRVGVRLP---DGRRMQRNFLR-TDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMI 337 (342)
Q Consensus 263 ~~~~i~iRlP---~G~r~~rrF~~-~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l 337 (342)
+.++|.|+.| +|+.+...+.. ++||..|-.-|... .+.+...-+|+.. .+. + +.+.||.+.|+. +++|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~-~gip~~~QrL~~~--Gk~--L--~D~~tL~~y~I~~g~~l 98 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGE-IQIPANKQKLSGK--AGF--L--KDNMSLAHYNVGAGEIL 98 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHH-TTCCTTTSEEECS--SSB--C--CTTSBTTTTTCSSSCEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHH-HCCCHHHeEEEEC--CEE--C--CCCCcHHHCCCCCCCEE
Confidence 4589999999 89999999997 99999999999886 4667777888753 332 4 458999999998 5666
Q ss_pred EEE
Q 019378 338 SVT 340 (342)
Q Consensus 338 ~v~ 340 (342)
++.
T Consensus 99 ~l~ 101 (111)
T 1we6_A 99 TLS 101 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 259
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=95.78 E-value=0.052 Score=48.08 Aligned_cols=90 Identities=12% Similarity=0.006 Sum_probs=56.9
Q ss_pred cCCeEEEEEe-cCCCcchh-hhhhcccCCHHHHHHHhccE-EEEEeecCChhHH--------------------HHHHhC
Q 019378 77 QDKWLLVNLQ-STKEFSSH-MLNRDTWANEAVSQTISTNF-IFWQVYDDTSEGK--------------------KVCTYY 133 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~-~f~rdvl~~~~V~~~i~~~F-V~w~~~~~s~eg~--------------------~~~~~y 133 (342)
.+||++|+|+ .+||..|. .-...+ ++...++-..++ .+++++.++.+.. .++..|
T Consensus 32 ~gk~vvl~f~~a~~cp~C~~~e~~~l--~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 109 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCSSSHLPRY--NELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGM 109 (241)
T ss_dssp TTSEEEEEEESCSSCHHHHHTHHHHH--HHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHT
T ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHh
Confidence 5799999998 99999998 321110 111112223467 7777777765432 234556
Q ss_pred CCC-----------CCcEEEEEeCCCCceEEEEeCC---------CChHHHHHHHHh
Q 019378 134 KLD-----------SIPVVLVVDPITGQKMRSWCGM---------VQPESLLEDLVP 170 (342)
Q Consensus 134 ~v~-----------~~P~l~ii~p~tG~~l~~~~G~---------~~~~~~l~~L~~ 170 (342)
++. ..|+.+|| + +|.++..+.|. .++++++..|..
T Consensus 110 gv~~~~~~~g~~~~~~p~t~li-~-~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~ 164 (241)
T 1nm3_A 110 GMLVGKEDLGFGKRSWRYSMLV-K-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP 164 (241)
T ss_dssp TCEEECTTTTCCEEECCEEEEE-E-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred CceeecccccCcccceeEEEEE-E-CCEEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence 653 35888888 6 79988888774 356777766653
No 260
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=95.77 E-value=0.069 Score=40.76 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=57.8
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
...++|.|+-.+|+.+..+...++++..|++-+.... +.+...++|+.. .+. + ..+.|.+++++. +.+|.|.
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 87 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 87 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHh-CCCccceEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4578999999999999999999999999999876653 556677777654 442 3 568999999998 6777766
Q ss_pred e
Q 019378 341 W 341 (342)
Q Consensus 341 w 341 (342)
+
T Consensus 88 ~ 88 (93)
T 2d07_B 88 Q 88 (93)
T ss_dssp E
T ss_pred e
Confidence 4
No 261
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=95.77 E-value=0.025 Score=47.06 Aligned_cols=78 Identities=12% Similarity=-0.058 Sum_probs=45.0
Q ss_pred HcCCeEEEEEe-cCCCcchh--hhhhcccCCHHHHHHHhccEE-EEEeecCChhH---------------------HHHH
Q 019378 76 VQDKWLLVNLQ-STKEFSSH--MLNRDTWANEAVSQTISTNFI-FWQVYDDTSEG---------------------KKVC 130 (342)
Q Consensus 76 ~~~K~LlV~l~-~~~~~~~~--~f~rdvl~~~~V~~~i~~~FV-~w~~~~~s~eg---------------------~~~~ 130 (342)
-.+||++|+|+ +.||..|. .+. .+ +....++-..++. ++.++.++++. ..++
T Consensus 33 ~~gk~vvl~f~~~~~c~~C~~~e~~-~l--~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (162)
T 1tp9_A 33 VAGKKVILFGVPGAFTPTCSLKHVP-GF--IEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYT 109 (162)
T ss_dssp HTTSEEEEEEESCTTCHHHHHTHHH-HH--HHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHH
T ss_pred hCCCcEEEEEeCCCCCCCCCHHHHH-HH--HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHH
Confidence 35899999999 89999998 221 10 0011111123454 55555554432 2344
Q ss_pred HhCCCC-----------CCcEEEEEeCCCCceEEEEeCC
Q 019378 131 TYYKLD-----------SIPVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 131 ~~y~v~-----------~~P~l~ii~p~tG~~l~~~~G~ 158 (342)
+.|++. ..|+.+||| .|.++..+.|.
T Consensus 110 ~~~gv~~~~~~~g~~~~~~p~~~vid--~G~i~~~~~~~ 146 (162)
T 1tp9_A 110 HALGLELDLQEKGLGTRSRRFALLVD--DLKVKAANIEG 146 (162)
T ss_dssp HHTTCEEEETTTTSEEEECCEEEEEE--TTEEEEEEECS
T ss_pred HHcCcccccccCCCCccceeEEEEEE--CCEEEEEEeeC
Confidence 556654 268888887 68877766654
No 262
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.76 E-value=0.086 Score=40.92 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=56.0
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~ 340 (342)
+...+|.||..+|+ +.-.+..++||..|..-|.... +.+....+|+.. .+. | +.+.||.++|+.+ .+|+|.
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHH-TCCTTTEEEEET--TEE--C--CTTSCHHHHTCCTTEEEEEE
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHcCCCCCCEEEEE
Confidence 56789999999996 6889999999999999998764 666778888754 432 4 4579999999984 556554
No 263
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.75 E-value=0.089 Score=42.39 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=56.2
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~ 340 (342)
....+|.|+.. |+.+...+..++||..|-.-|.... +.+....+|+.. .+. | +.+.||.++|+.+ .+|.|.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~dygI~~gstI~lv 101 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRF-KSQTDQLVLIFA--GKI--L--KDQDTLIQHGIHDGLTVHLV 101 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHH-CSCSSSEEEEET--TEE--E--STTSCGGGTTCSSSEEEEEE
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHH-CcCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 45789999988 8899999999999999999998764 666778888754 432 5 4579999999984 556554
No 264
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.73 E-value=0.064 Score=40.88 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=56.0
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~ 340 (342)
....+|.||.++| .+.-.+..++||..|-.-|... .+.+...-+|+. ..+. | .|.+.||.+.|+.+ ++|.++
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L-~D~~~tL~~ygI~~gstl~lv 85 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIV-ENTPIKRMQLYY--SGIE--L-ADDYRNLNEYGITEFSEIVVF 85 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHH-SSSCTTTEEEEE--TTEE--E-CCTTSBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEEEE--CCEE--C-CCCcccHHHCCCCCCCEEEEE
Confidence 4568999999999 7888999999999999999886 477778888874 3543 5 23339999999984 556553
No 265
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.72 E-value=0.046 Score=41.54 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
.+...+|.|+.. |+.+.-.+..++||..|-.-|... .+.+....+|+.. .+. | +.+.||.+.|+.+ ++|.+
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l 85 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKY-LHCNADRLVLIFT--GKI--L--RDQDILSQRGILDGSTVHV 85 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHH-TCSCTTTBCCEET--TEE--C--CTTSCHHHHTCCTTEEEEC
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHH-hCCCHHHEEEEEC--CEE--C--CCcCCHHHCCCCCCCEEEE
Confidence 356789999998 899999999999999999999886 3666666777643 432 4 4579999999984 55655
Q ss_pred E
Q 019378 340 T 340 (342)
Q Consensus 340 ~ 340 (342)
.
T Consensus 86 ~ 86 (96)
T 1wx8_A 86 V 86 (96)
T ss_dssp C
T ss_pred E
Confidence 3
No 266
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=95.70 E-value=0.052 Score=40.70 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=54.5
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+|.||..+|+.+.-.+..++||..|-.-+.... +.+....+|+.. .+ .| +.+.||.+.|+. +++|.+.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk--~L--~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GK--QM--NDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TE--EC--CTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChhHEEEEEC--Ce--EC--CCCCcHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999998763 666777788764 33 24 458999999998 5666654
No 267
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=95.68 E-value=0.085 Score=52.50 Aligned_cols=113 Identities=10% Similarity=0.023 Sum_probs=72.7
Q ss_pred ccchhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC
Q 019378 43 TADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD 122 (342)
Q Consensus 43 ~~~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~ 122 (342)
+-.|....+-..-++|. -....+.+.++ ...++..++.|..+||.+|..+..-+ +.+ ...+.+..+..+|.+
T Consensus 86 e~~s~~~~l~~~~~~~~--~~~~~~~~~i~--~~~~~~~i~~f~a~~C~~C~~~~~~l---~~~-a~~~~~v~~~~vd~~ 157 (521)
T 1hyu_A 86 EFTSLVLALLWTGGHPS--KEAQSLLEQIR--DIDGDFEFETYYSLSCHNCPDVVQAL---NLM-AVLNPRIKHTAIDGG 157 (521)
T ss_dssp GHHHHHHHHHHHTTCCC--CSCHHHHHHHH--HCCSCEEEEEEECTTCSSHHHHHHHH---HHH-HHHCTTEEEEEEETT
T ss_pred hHHHHHHHHHhhcCCCC--CCCHHHHHHHH--hcCCCcceEEEECCCCcCcHHHHHHH---HHH-HhHcCceEEEEEech
Confidence 44455555444444442 22333333332 23466778899999999999985321 111 122346777777765
Q ss_pred ChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378 123 TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 171 (342)
Q Consensus 123 s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~ 171 (342)
+...++..|++.++|+++| +|+.+.. |..+.++++..|...
T Consensus 158 --~~~~~~~~~~i~svPt~~i----~g~~~~~--G~~~~~~l~~~l~~~ 198 (521)
T 1hyu_A 158 --TFQNEITERNVMGVPAVFV----NGKEFGQ--GRMTLTEIVAKVDTG 198 (521)
T ss_dssp --TCHHHHHHTTCCSSSEEEE----TTEEEEE--SCCCHHHHHHHHCCS
T ss_pred --hhHHHHHHhCCCccCEEEE----CCEEEec--CCCCHHHHHHHHhhc
Confidence 4567899999999999976 5777644 888999998877654
No 268
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.59 E-value=0.18 Score=39.36 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=57.0
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
...++|.|+-.+|+.+..+...+++|..|++-+.... +.+...++|+-. .+. + ..+.|.+++++. +.+|.|.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~-gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 94 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 94 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHH-TCCTTTSCEESS--SSB--C--CTTSCTTTTTCCTTEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4578999999999999999999999999999876653 556667777643 442 3 568999999998 5777665
Q ss_pred e
Q 019378 341 W 341 (342)
Q Consensus 341 w 341 (342)
+
T Consensus 95 ~ 95 (104)
T 1wz0_A 95 Q 95 (104)
T ss_dssp C
T ss_pred E
Confidence 4
No 269
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.57 E-value=0.042 Score=42.52 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=54.0
Q ss_pred CCeeEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEecCCCCccccCCCcCCChhhc--CCcC-c
Q 019378 262 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDS--GLAN-A 335 (342)
Q Consensus 262 ~~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~--gL~~-~ 335 (342)
+..+.|.||.++|+ .+.-....++||..|-.-|...+++.++ ..-+|+.. .+. | +.+.||.+. |+.+ .
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~--Gk~--L--~D~~tL~~y~~~I~~~~ 94 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS--GRL--L--PDHLQLKDILRKQDEYH 94 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET--TEE--E--CTTSBTHHHHTTTCSEE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC--CEE--C--CCCCCHHHHhcCCCCCC
Confidence 45689999999998 4566669999999999999986655543 67788753 443 5 457999999 9985 5
Q ss_pred eEEE
Q 019378 336 MISV 339 (342)
Q Consensus 336 ~l~v 339 (342)
+|.+
T Consensus 95 tihL 98 (99)
T 2kdb_A 95 MVHL 98 (99)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5654
No 270
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=95.54 E-value=0.073 Score=42.07 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=56.7
Q ss_pred CeeEEEEECCC----------CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCC
Q 019378 263 LLCRVGVRLPD----------GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 332 (342)
Q Consensus 263 ~~~~i~iRlP~----------G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL 332 (342)
+.++|.|++|+ |+.+.-.+..++||..|-.-|... .+.+...-+|+.. .+. | +.+.||.+.|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrL~~~--Gk~--L--~D~~tL~~y~i 96 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEA-TGMPAGKQKLQYE--GIF--I--KDSNSLAYYNM 96 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHH-SSCCTTTEEEEET--TEE--E--CTTSBHHHHTC
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHH-HCCChHHEEEEEC--CEE--C--CCCCCHHHCCC
Confidence 46899999996 778889999999999999999876 4777778888753 432 4 45799999999
Q ss_pred c-CceEEEE
Q 019378 333 A-NAMISVT 340 (342)
Q Consensus 333 ~-~~~l~v~ 340 (342)
. +++|.+.
T Consensus 97 ~~g~~i~lv 105 (115)
T 1we7_A 97 ASGAVIHLA 105 (115)
T ss_dssp CSSCEEEEE
T ss_pred CCCCEEEEE
Confidence 8 5666654
No 271
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.51 E-value=0.068 Score=40.52 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=54.0
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+...+|.||..+|+.+...+..+++|..|-.-|.... ....+|+.. .+. | .|.+.||.++|+. +.+|++.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~----~~~qrLi~~--Gk~--L-~D~~~tL~~y~i~~g~~i~l~ 75 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ----ESQMKLIYQ--GRL--L-QDPARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST----TTTCEEEET--TEE--C-CCSSCBTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC----cCcEEEEEC--CEE--c-cCCcCCHHHcCCCCCCEEEEE
Confidence 3468999999999999999999999999999987652 556777643 442 5 2444999999998 4566654
No 272
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=95.50 E-value=0.068 Score=40.04 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=55.7
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..+|.++..+|+.+.-.+..++||.+|-.-+.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 79 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 79 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTSBSGGGTCCTTCEEEEE
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 35789999999999999999999999999998864 667778888753 443 5 448999999998 4666554
No 273
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=95.49 E-value=0.028 Score=40.86 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=40.8
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
++.|+.+||..|+.+.. .+.+++++ .|.++.++.+ .+...++..|++.++|+++| +|+.+
T Consensus 4 ~~~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~gv~~vPt~~i----~g~~~ 66 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQ------AVANAIDPSKYTVEIVHLGTD-KARIAEAEKAGVKSVPALVI----DGAAF 66 (80)
T ss_dssp EEEEEECSCHHHHHHHH------HHHHHSCTTTEEEEEEETTTC-SSTHHHHHHHTCCEEEEEEE----TTEEE
T ss_pred eEEEeCCCCCchHHHHH------HHHHHHHhcCCeEEEEEecCC-hhhHHHHHHcCCCcCCEEEE----CCEEE
Confidence 45667899999999863 34455554 3555544432 13456778999999999876 47754
No 274
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=95.47 E-value=0.069 Score=42.01 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=57.4
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
...+|.||..+|+.+.-++..++||..|-.-+.... +.++...+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHh-CCChHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 358999999999999999999999999999998864 667777888753 442 4 457899999998 5667664
No 275
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.46 E-value=0.093 Score=40.50 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=55.5
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
...+|.|+.. |+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.|.
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gI~~g~~I~l~ 94 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRF-KSHTDQLVLIFA--GKI--L--KDQDTLSQHGIHDGLTVHLV 94 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHH-TCCGGGEEEEET--TEE--E--CTTCCTGGGTCCTTCEEEEE
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHcCCCCCCEEEEE
Confidence 4689999998 8889999999999999999998763 667777888753 442 5 457999999998 4666554
No 276
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=95.46 E-value=0.091 Score=40.19 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=58.1
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
+..+.|-|+.++|+.+.-.+..+|||..|-.-|..+ .|.++..-+|.-. .+. | +.+.||+|.|+.+ .+|.+
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k-~Gip~~qQrLif~--Gk~--L--kD~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQ-IGTQPNKIVLQKG--GSV--L--KDHISLEDYEVHDQTNLEL 90 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHH-hCCCHHHEEEEeC--CEE--c--cCcCCHHHcCCCCCCEEEE
Confidence 458999999999999999999999999999999876 4777788888764 332 4 5589999999994 55654
No 277
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=95.45 E-value=0.13 Score=39.12 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=57.3
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
..++|.|+-.+|+.+..+...++++..|++-.... .|.+...++|+-. .+. + +.+.|.+++|+. +.+|-|.+
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~-~gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-QGLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-TTCCSTTEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-hCCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEEE
Confidence 46889999999999999999999999999987665 3666778888754 432 3 568999999998 56676654
No 278
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=95.44 E-value=0.065 Score=47.84 Aligned_cols=93 Identities=8% Similarity=-0.010 Sum_probs=58.3
Q ss_pred cCC-eEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH---------------------------
Q 019378 77 QDK-WLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------- 127 (342)
Q Consensus 77 ~~K-~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------- 127 (342)
.+| |++|+++ .++|+.|..-...+ +....+|-..++.++++++++.+..
T Consensus 27 ~Gk~~vvL~f~pa~~cpvC~~el~~l--~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~ 104 (233)
T 2v2g_A 27 LGNSWGVLFSHPRDFTPVSTTELGRV--IQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETR 104 (233)
T ss_dssp HCSSEEEEEECSCSSCHHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTC
T ss_pred CCCCeEEEEEECCCCCCCcHHHHHHH--HHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChH
Confidence 355 9999998 78999987643211 0111122234677777777664421
Q ss_pred HHHHhCCCC------------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378 128 KVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 172 (342)
Q Consensus 128 ~~~~~y~v~------------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l 172 (342)
.++..|++. .+|+++|||| .|.+...+.|.. +.++++..|....
T Consensus 105 ~va~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eilr~l~~Lq 164 (233)
T 2v2g_A 105 ELAVKLGMVDPDERTSTGMPLTCRAVFIIGP-DKKLKLSILYPATTGRNFSEILRVIDSLQ 164 (233)
T ss_dssp HHHHHTTCEEEEEECTTCCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCcCcccccCCCcccccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 234556653 4799999998 789887776532 5677777666543
No 279
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=95.41 E-value=0.034 Score=43.70 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=52.2
Q ss_pred eEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378 80 WLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 158 (342)
Q Consensus 80 ~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~ 158 (342)
..++.++.+||..|+.+.. -+.++..+ .+-+..+|++.. ..++..|++. +|+|+++. +|+.+ ..|.
T Consensus 30 ~~vv~y~~~~C~~C~~a~~------~L~~l~~e~~i~~~~vDId~d--~~l~~~ygv~-VP~l~~~~--dG~~v--~~g~ 96 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIA------SLRVLQKKSWFELEVINIDGN--EHLTRLYNDR-VPVLFAVN--EDKEL--CHYF 96 (107)
T ss_dssp CCEEEEECSSCHHHHHHHH------HHHHHHHHSCCCCEEEETTTC--HHHHHHSTTS-CSEEEETT--TTEEE--ECSS
T ss_pred cEEEEEeCCCChhHHHHHH------HHHHHHHhcCCeEEEEECCCC--HHHHHHhCCC-CceEEEEE--CCEEE--EecC
Confidence 4588899999999999842 22333322 356666777643 2467789986 99997653 57766 3577
Q ss_pred CChHHHHHHH
Q 019378 159 VQPESLLEDL 168 (342)
Q Consensus 159 ~~~~~~l~~L 168 (342)
.+++.+...|
T Consensus 97 ~~~~~L~~~L 106 (107)
T 2fgx_A 97 LDSDVIGAYL 106 (107)
T ss_dssp CCCHHHHHHH
T ss_pred CCHHHHHHHh
Confidence 8888876654
No 280
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=95.41 E-value=0.076 Score=46.38 Aligned_cols=83 Identities=13% Similarity=0.243 Sum_probs=56.9
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecC---C---------------------------
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDD---T--------------------------- 123 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~---s--------------------------- 123 (342)
..+|..+|.|.+.+|..|+.|... +.++.+. .+++..+.+. +
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~------l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~ 157 (211)
T 1t3b_A 84 KNEKHVVTVFMDITCHYCHLLHQQ------LKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL 157 (211)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHTT------HHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC
T ss_pred CCCCEEEEEEECCCCHhHHHHHHH------HHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCC
Confidence 367899999999999999999753 4454443 3333222211 0
Q ss_pred ----------hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 124 ----------SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 124 ----------~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
.+...+++.|++.++|+++|. +|+ .+.|..+++.|...|..
T Consensus 158 ~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi~---nG~---~~~G~~~~~~l~~~l~~ 208 (211)
T 1t3b_A 158 PKEVKTPNIVKKHYELGIQFGVRGTPSIVTS---TGE---LIGGYLKPADLLRALEE 208 (211)
T ss_dssp CSSCCCSSHHHHHHHHHHHHTCCSSCEEECT---TSC---CCCSCCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCCcCCEEEEe---CCE---EecCCCCHHHHHHHHHh
Confidence 123456788999999999883 465 46798899888776653
No 281
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=95.32 E-value=0.094 Score=40.19 Aligned_cols=76 Identities=8% Similarity=0.022 Sum_probs=58.4
Q ss_pred CCeeEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCcc-ccCCCcCCChhhcCCcC-ceE
Q 019378 262 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATK-SLDYDSKLTFEDSGLAN-AMI 337 (342)
Q Consensus 262 ~~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~-~l~~~~~~Tl~e~gL~~-~~l 337 (342)
++.++|.|+.++++ .+.+++..++||..|-.-|... .|.++..-+|+-..+.+.. .+ .+.+.||.+.|+.+ ++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-~GiP~~~QrL~~~~~g~~~~~L-~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-TGGCAGTMKVQVFKGDTCVSTM-DNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-HCSCTTTEEEEEEETTEEEEEC-CCTTSBHHHHCCSSSCEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-HCcCHHHeEEEEecCCccccee-CCCCCCHhHCCcCCCCEE
Confidence 56899999998885 7999999999999999999886 4777788888764333210 13 36689999999985 556
Q ss_pred EE
Q 019378 338 SV 339 (342)
Q Consensus 338 ~v 339 (342)
.|
T Consensus 91 hl 92 (95)
T 2kjr_A 91 HV 92 (95)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 282
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=95.29 E-value=0.16 Score=39.73 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=56.1
Q ss_pred CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
+...++|.|+- +|+.+..+...+++|+.|++-+.... +.....++|+-. .+. + ..+.|.+++|+. +.+|-|
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~-gi~~~~~rF~Fd--G~r--l--~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQ-GKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHh-CCCcccEEEEEC--CeE--c--CCCCCHHHcCCCCCCEEEE
Confidence 45678899999 99999999999999999999866543 656677787754 432 3 568999999998 566665
Q ss_pred E
Q 019378 340 T 340 (342)
Q Consensus 340 ~ 340 (342)
.
T Consensus 100 ~ 100 (106)
T 2eke_C 100 H 100 (106)
T ss_dssp E
T ss_pred E
Confidence 4
No 283
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.28 E-value=0.12 Score=39.57 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=57.4
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+..++|.|+-.+|+.+..+...++++..|++-+.... +.+...++|+-. .+. + +.+.|.+++++. +.+|.|.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 77 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 77 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTCEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4568899999999999999999999999999876653 666677888654 443 4 568999999998 6777765
Q ss_pred e
Q 019378 341 W 341 (342)
Q Consensus 341 w 341 (342)
.
T Consensus 78 ~ 78 (94)
T 2io1_B 78 Q 78 (94)
T ss_dssp E
T ss_pred E
Confidence 4
No 284
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.24 E-value=0.14 Score=41.52 Aligned_cols=76 Identities=11% Similarity=0.155 Sum_probs=56.8
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCC-------------------------cccc-
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGA-------------------------TKSL- 319 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~-------------------------~~~l- 319 (342)
.|.||||||+..+-+-..+.+|..+..-|...+.-.....|.|+...|.. ...+
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 59999999999999999999999999998877643334568888654422 0011
Q ss_pred ------CCCcCCChhhcCCc-CceEEEEe
Q 019378 320 ------DYDSKLTFEDSGLA-NAMISVTW 341 (342)
Q Consensus 320 ------~~~~~~Tl~e~gL~-~~~l~v~w 341 (342)
..|.+.||.|-|+. +.+|++.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 12458999999998 68888765
No 285
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=95.21 E-value=0.1 Score=40.21 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=55.6
Q ss_pred CCCeeEEEEECCCCceEEE--EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCC-c-Cce
Q 019378 261 RSLLCRVGVRLPDGRRMQR--NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL-A-NAM 336 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~r--rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL-~-~~~ 336 (342)
.++..+|-||..+|+.+.- .+..++||..|-.-|.....|.+...-+|+.. ++. | +.+.||.++|+ . +++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~--Gk~--L--~D~~tL~dy~I~~~g~t 89 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK--GKV--L--HDNLFLSDLKVTPANST 89 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET--TEE--E--CTTCBGGGSCCBTTBCE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC--CEE--C--cCcCCHHHcCcCCCCCE
Confidence 4567899999999997655 56799999999999933346777778888864 443 5 45799999999 6 667
Q ss_pred EEEE
Q 019378 337 ISVT 340 (342)
Q Consensus 337 l~v~ 340 (342)
|++.
T Consensus 90 i~lm 93 (98)
T 4a20_A 90 ITVM 93 (98)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 286
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.11 E-value=0.14 Score=39.44 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=56.1
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+...+|.|+..+|+ ..-.+..++||..|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBHHHHTCCTTCEEEEE
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 46799999999996 6889999999999999998763 666777888753 442 4 457999999998 5666654
No 287
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=95.09 E-value=0.12 Score=46.13 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=58.4
Q ss_pred HHcCCeEEEEEecCC--CcchhhhhhcccCCHHHHHHHh--cc------EEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 75 SVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIS--TN------FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 75 k~~~K~LlV~l~~~~--~~~~~~f~rdvl~~~~V~~~i~--~~------FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+-.++++|.+..+| |..|..+. +-+.++-+ .. ..+..+|.+ +...++..|+|..+|++.|+
T Consensus 22 ~~~~~pv~v~~~~~~~~c~~c~~~~------~~l~ela~~~~~~~~~~~v~~~~vd~d--~~~~~~~~~gv~~~Pt~~i~ 93 (243)
T 2hls_A 22 AEMVNPVEVHVFLSKSGCETCEDTL------RLMKLFEEESPTRNGGKLLKLNVYYRE--SDSDKFSEFKVERVPTVAFL 93 (243)
T ss_dssp TTCCSCEEEEEEECSSSCTTHHHHH------HHHHHHHHHSCEETTEESEEEEEEETT--TTHHHHHHTTCCSSSEEEET
T ss_pred HhCCCCEEEEEEeCCCCCCchHHHH------HHHHHHHHhccCCCCCceeEEEEecCC--cCHHHHHhcCCCcCCEEEEE
Confidence 345689999999998 99999873 22222222 12 445555654 34578999999999999998
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 145 DPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+| ..++.|..+...+...+..+++
T Consensus 94 ---~g--~~~~~G~~~~~~l~~fv~~~l~ 117 (243)
T 2hls_A 94 ---GG--EVRWTGIPAGEEIRALVEVIMR 117 (243)
T ss_dssp ---TT--TEEEESCCCTTHHHHHHHHHHH
T ss_pred ---CC--ceeEcCCCcHHHHHHHHHHHHh
Confidence 35 5567787766666666555554
No 288
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.07 E-value=0.097 Score=39.90 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=52.8
Q ss_pred CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
.+..++|.|++ +|+.+.-.+..++||.+|-.-|... .+.+...-+|+ |..+. + + +.||.++|+.+ .+|++
T Consensus 14 ~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~-tgip~~~QrL~--~~Gk~--L--d-d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 14 GKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSI-TGLPPAMQKVM--YKGLV--P--E-DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp CCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHH-HCSCSTTCCCB--SSSBC--C--S-SSBHHHHCCCTTEEEEE
T ss_pred CCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-HCcCHHHeEEE--ECCee--C--C-cCcHHHCCCCCCCEEEE
Confidence 34578899996 6888899999999999999999886 36666666776 55553 4 3 34999999985 55544
No 289
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.082 Score=41.20 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=54.3
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
.+|.||..+|+.+.-.+..++||..|-.-|... .+.+...-+|+.. ++. | +.+.||.++|+. +++|.+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~lv 71 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQS-ISCEESQIKLIYS--GKV--L--QDSKTVSECGLKDGDQVVFM 71 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHT-TTSCGGGCEEEET--TEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCChhhEEEEEC--CEE--C--CCcCCHHHcCCCCCCEEEEE
Confidence 468899999999999999999999999999875 4666677788753 442 5 448999999998 5666654
No 290
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=94.93 E-value=0.14 Score=40.45 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+..++|.|+-.+|+.+..+...++++..|++-+... .+.+...++|+-. .+. + ..+.|.+++++- +.+|-|.
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek-~gi~~~~~rfiFd--G~~--L--~~~~Tp~dl~mEDgD~Idv~ 96 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKK-QGISRNSVRFLFD--GTP--I--DETKTPEELGMEDDDVIDAM 96 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHH-HTCCSSSCEEESS--SCB--C--CSSSHHHHHHCSSEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-hCCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 457899999999999999999999999999886654 3666677777653 443 3 568999999998 5666654
Q ss_pred e
Q 019378 341 W 341 (342)
Q Consensus 341 w 341 (342)
.
T Consensus 97 ~ 97 (110)
T 2k8h_A 97 V 97 (110)
T ss_dssp C
T ss_pred E
Confidence 3
No 291
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.84 E-value=0.12 Score=42.12 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=56.7
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
...|.|+.++|+.+...+..++||..|-.-+.... +.+....+|+. ..+. + +.+.||++.|+. +++|.+.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~qrL~~--~g~~--L--~d~~tL~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 146 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHh-CcChhhEEEEE--CCEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 47889999999999999999999999999998763 66778888875 3543 4 458999999998 5666654
No 292
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.75 E-value=0.099 Score=40.92 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=56.1
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCC---------------CcCeEEEecCCCCccccCCCcCCCh
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSE---------------MKPFRLTHAIPGATKSLDYDSKLTF 327 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~---------------~~~f~L~~~fPr~~~~l~~~~~~Tl 327 (342)
...+|.|+.-+|+.+.-....++||.+|-.-|.... +.+ ...|.|+ |..+. | .+.++||
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~-~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~--L-~dD~~tL 79 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYV-QLKQEREGGVQHISWSYVWRTYHLT--SAGEK--L-TEDRKKL 79 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTTCCCCCCHHHHHTTEEEE--SSSCE--E-CCSSSBH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHh-CCCcccccCcceeeeeecceeEEEE--eCCcC--c-cCCcCCH
Confidence 458899999999999999999999999999988763 211 1468998 55664 5 3668999
Q ss_pred hhcCCc-CceEEEE
Q 019378 328 EDSGLA-NAMISVT 340 (342)
Q Consensus 328 ~e~gL~-~~~l~v~ 340 (342)
++.|+. +++|+++
T Consensus 80 ~dygI~~g~~l~lv 93 (105)
T 1v2y_A 80 RDYGIRNRDEVSFI 93 (105)
T ss_dssp HHHTCCSSEEEEEE
T ss_pred HHcCCCCCCEEEEE
Confidence 999999 4666554
No 293
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.16 Score=40.07 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=57.4
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+..+|.++..+|+.+.-.+..++||..|-.-|... .+.+...-+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLIWA--GKQ--L--EDGRTLSDYNIQRESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTCBTTTTTCCSSCEEEEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHH-HCcChHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 45789999999999999999999999999999876 3667778888754 442 4 458999999998 5666554
No 294
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=94.68 E-value=0.27 Score=35.31 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=53.6
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
++|.|+-.+|+.+..+...++++..|++-..... |.+...++|+-. ++. + ..+.|.+++|+. +.+|.|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHH-TCCTTTCEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence 5788999999999999999999999998876653 666677787754 432 3 568999999998 555654
No 295
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.13 Score=38.77 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=55.4
Q ss_pred eEEEEECCCCceEEEE--eCCCCchHHHHHHH-HhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCC--cCceEEE
Q 019378 265 CRVGVRLPDGRRMQRN--FLRTDPIQLLWSYC-YSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL--ANAMISV 339 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rr--F~~~~~l~~l~~fv-~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL--~~~~l~v 339 (342)
.+|-||.++|+++.-. +..++||..|-.-| .. ..|.+...-+|+.. ++. | +.+.||.++|+ .+++|.|
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~-~~gip~~~QrLi~~--Gk~--L--~D~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISE-EKASHISEIKLLLK--GKV--L--HDNLFLSDLKVTPANSTITV 74 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHT-TSCSSSTTEEEEET--TEE--C--CTTCBHHHHCCCGGGCEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHH-hcCCChHHEEEEEC--CEE--C--cCcCCHHHcCCCCCCCEEEE
Confidence 4788999999977766 55999999999999 55 46778888899864 443 5 55899999999 3678877
Q ss_pred Ee
Q 019378 340 TW 341 (342)
Q Consensus 340 ~w 341 (342)
.+
T Consensus 75 ~~ 76 (87)
T 2lxa_A 75 MI 76 (87)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 296
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=94.58 E-value=0.18 Score=42.19 Aligned_cols=90 Identities=11% Similarity=-0.073 Sum_probs=52.6
Q ss_pred cCCeEEEEEe-cCCCcchhh-hhhcccCCHHHHHHHhccE-EEEEeecCChhHH---------------------HHHHh
Q 019378 77 QDKWLLVNLQ-STKEFSSHM-LNRDTWANEAVSQTISTNF-IFWQVYDDTSEGK---------------------KVCTY 132 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~-f~rdvl~~~~V~~~i~~~F-V~w~~~~~s~eg~---------------------~~~~~ 132 (342)
.+|+++|+|. .+||..|.. -...+ ++...++-..++ .++.++.++.+.. .+++.
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l--~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 107 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSKTHLPGY--VEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKA 107 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHH--HHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHH
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHH
Confidence 5788888886 899999987 21110 011112223456 6666666664421 23445
Q ss_pred CCCCC-----------CcEEEEEeCCCCceEEEEeCC-------CChHHHHHHHHh
Q 019378 133 YKLDS-----------IPVVLVVDPITGQKMRSWCGM-------VQPESLLEDLVP 170 (342)
Q Consensus 133 y~v~~-----------~P~l~ii~p~tG~~l~~~~G~-------~~~~~~l~~L~~ 170 (342)
|++.. .|+.+|| + .|.++..+.|. ..++.+++.|..
T Consensus 108 ~gv~~~~~~~~g~~~~~p~t~lI-~-~G~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (167)
T 2wfc_A 108 VDMELDLSAVLGNVRSKRYSLVI-E-DGVVTKVNVEPDGKGLTCSLAPNILSQLGG 161 (167)
T ss_dssp TTCEECCHHHHSSCEECCEEEEE-E-TTEEEEEEECTTSSSSSTTSHHHHHHHHC-
T ss_pred cCCccccccccCcccceEEEEEE-e-CCEEEEEEecCCCCcceeccHHHHHHHhcc
Confidence 55532 3888888 6 78888776652 346667666543
No 297
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.58 E-value=0.26 Score=37.00 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=54.9
Q ss_pred CCeeEEEEECCCCceEEEEeCCC-----CchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-c
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRT-----DPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-A 335 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~-----~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~ 335 (342)
+...+|.|+.+ |+.+...+..+ +||.+|-.-|... .+.+...-+|+.. .+. | .|.++||.++|+.+ .
T Consensus 5 ~~~~~v~Vk~~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~-~gip~~~qrL~~~--Gk~--L-~D~~~~L~~~~i~~g~ 77 (92)
T 1wxv_A 5 SSGLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEV-IGVPQSFQKLIFK--GKS--L-KEMETPLSALGIQDGC 77 (92)
T ss_dssp CSSEEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHH-TCCCTTTCEEEET--TEE--E-CCSSSBHHHHTCCSSE
T ss_pred CCeEEEEEEEC-CEEEEEEECCCcCcccCcHHHHHHHHHHH-HCcCHHHEEEEEC--Cee--c-CCCcccHHHCCCCCCC
Confidence 34688999984 77888899985 9999999999875 4777778888753 442 5 35688999999984 5
Q ss_pred eEEEE
Q 019378 336 MISVT 340 (342)
Q Consensus 336 ~l~v~ 340 (342)
+|++.
T Consensus 78 ~i~l~ 82 (92)
T 1wxv_A 78 RVMLI 82 (92)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 56553
No 298
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=94.58 E-value=0.33 Score=35.64 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=54.9
Q ss_pred CCeeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 262 SLLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 262 ~~~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
+..++|.|+-.+|+ .+..+...++++..|++-..... +.+...++|+-. .+. + ..+.|.+++|+. +.+|.|
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~~l~medgD~Idv 77 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAM-GLSGHKLSFFFD--GTK--L--SGKELPADLGLESGDLIEV 77 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHH-TCTTCCCEEEET--TEE--C--CSCCCHHHHTCCTTCEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence 35689999999996 89999999999999998876653 556667777653 432 3 568999999998 455554
No 299
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=94.55 E-value=0.16 Score=42.80 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=57.4
Q ss_pred CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
.+...+|.|+..+|+.+.-+...++||..|-.-|... .+.+...-+|+.. .+. | +.+.||.+.|+. +++|.+
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gip~~~QrL~~~--g~~--L--~d~~tL~~~~i~~~~~l~l 89 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHL 89 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTCBTGGGTCCTTCEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcChHHEEEEEC--Ccc--c--cccCCHhHcCCcccceeee
Confidence 3557899999999999999999999999999999885 4667777788753 432 4 558999999998 566655
Q ss_pred E
Q 019378 340 T 340 (342)
Q Consensus 340 ~ 340 (342)
.
T Consensus 90 ~ 90 (172)
T 3u30_A 90 V 90 (172)
T ss_dssp E
T ss_pred e
Confidence 4
No 300
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=94.50 E-value=0.14 Score=43.45 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=32.1
Q ss_pred HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+..+++.++|+++| +|+.+....|..+.+.|...|...+..
T Consensus 145 a~~~gv~gtPt~~v----ng~~~~~~~G~~~~e~l~~~i~~l~~k 185 (192)
T 3h93_A 145 AMAYQVTGVPTMVV----NGKYRFDIGSAGGPEETLKLADYLIEK 185 (192)
T ss_dssp HHHHTCCSSSEEEE----TTTEEEEHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCeEEE----CCEEEecccccCCHHHHHHHHHHHHHH
Confidence 45778999999987 577765556888999998888777653
No 301
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.2 Score=44.28 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=61.3
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV 129 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~ 129 (342)
.|||+++||+ .++|+.|..=... -++...+|-+.+..+++++.++.... .+
T Consensus 51 ~GK~vVL~FyP~d~TpvCt~E~~~--f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~v 128 (216)
T 3sbc_A 51 KGKYVVLAFIPLAFTFVSPTEIIA--FSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSL 128 (216)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHH--HHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCcCchhhhH--HHHhHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHH
Confidence 5899999999 7888888763211 12233444456899999999886543 35
Q ss_pred HHhCCC------CCCcEEEEEeCCCCceEEEEeC----CCChHHHHHHHHh
Q 019378 130 CTYYKL------DSIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVP 170 (342)
Q Consensus 130 ~~~y~v------~~~P~l~ii~p~tG~~l~~~~G----~~~~~~~l~~L~~ 170 (342)
++.|++ ..++.+.|||| .|.+...+.. .-+.+++|..|..
T Consensus 129 ak~YGv~~~~~g~~~R~tFiID~-~G~Ir~~~v~~~~~grn~dEiLr~l~A 178 (216)
T 3sbc_A 129 SRDYGVLIEEEGVALRGLFIIDP-KGVIRHITINDLPVGRNVDEALRLVEA 178 (216)
T ss_dssp HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HHHcCCeeccCCceeeEEEEECC-CCeEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 667776 23688999998 6776554422 1367888776653
No 302
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=94.43 E-value=0.26 Score=39.68 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=52.7
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc-----CCC--CCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL-----EGS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 333 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~-----~~~--~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 333 (342)
...+.|.||+.+|+++.-.+..++||..|-+-|.... ++. +....+|+.. .+. | +.+.||.+.|+.
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~--GK~--L--eD~~TL~~y~I~ 87 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGALKLP 87 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS--SSE--E--ESSCBTGGGCCC
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC--CcC--C--CCCCcHHHcCCC
Confidence 4568999999999999999999999999999998743 233 2456778765 453 5 567999999997
No 303
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=94.41 E-value=0.37 Score=38.90 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=51.3
Q ss_pred CeeEEEEECCCCceE-EEEeCCCCchHHHHHHHHhhcC----CCCC--cCeEEEecCCCCccccCCCcCCChhhcCCcC
Q 019378 263 LLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLE----GSEM--KPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 334 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~-~rrF~~~~~l~~l~~fv~~~~~----~~~~--~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~ 334 (342)
+...|.||+.+|+.+ .-.|..++||..|-+-|....+ +.+. ..-+|+.+ .+. | +.+.||++.++..
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~--GK~--L--eD~~TLsdy~I~~ 87 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA--GKV--L--ENSKTVKDYRSPV 87 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET--TEE--C--CTTSBGGGGSCCT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC--CeE--C--cCCCcHHHcCCCc
Confidence 578999999999988 6899999999999999976542 2222 45677764 443 4 6689999999984
No 304
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.39 E-value=0.19 Score=41.02 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=54.7
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+|.|+.++|+.+.-.+..++||.+|-.-+.... +.++....|+.. .+. + +.+.||.+.|+. +++|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gip~~~q~L~~~--g~~--L--~d~~tL~~~~i~~~~~l~l~ 70 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChHHeEEEEC--CeE--C--cCcccHHHhccCCCCeeEEE
Confidence 588999999999999999999999999998864 666777788753 442 4 458999999998 5666654
No 305
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.16 E-value=0.088 Score=42.33 Aligned_cols=77 Identities=8% Similarity=0.097 Sum_probs=47.5
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhH-HHHHHhCCCCCCc
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIP 139 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg-~~~~~~y~v~~~P 139 (342)
......+.+..+...++ ++| +..+||..|..+.. +.+-+.-.|..+.++.+. ++. ..+...|++.++|
T Consensus 12 ~~~~~~~~~~~~i~~~~-vvv-f~~~~Cp~C~~~~~-------~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP 82 (130)
T 2cq9_A 12 LATAPVNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVP 82 (130)
T ss_dssp CSCCHHHHHHHHHHHSS-EEE-EECSSCSHHHHHHH-------HHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSS
T ss_pred ccHHHHHHHHHHHcCCc-EEE-EEcCCChHHHHHHH-------HHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcC
Confidence 34556666666666665 444 67889999998742 222233466665544431 222 2477889999999
Q ss_pred EEEEEeCCCCceE
Q 019378 140 VVLVVDPITGQKM 152 (342)
Q Consensus 140 ~l~ii~p~tG~~l 152 (342)
+|. + +|+.+
T Consensus 83 ~l~-i---~G~~i 91 (130)
T 2cq9_A 83 RIF-V---NGTFI 91 (130)
T ss_dssp EEE-E---TTEEE
T ss_pred EEE-E---CCEEE
Confidence 984 4 46654
No 306
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.14 E-value=0.25 Score=36.66 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=56.6
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccc-cCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKS-LDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~-l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
-.+|-|+..+|+.+.-.+..++||.+|-.-+... .|.++..-+|+.. .+ . + +.+.||++.|+. +++|.+.
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~~--Gk--~lL--~D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERS-QHIPVSKQTLIVD--GI--VIL--REDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHH-HTCCGGGEEEEET--TE--ECC--CSSSBHHHHTCCTTSCEEEE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHH-HCcChHHEEEEEC--CE--Eec--CCcCCHHHcCCCCCCEEEEE
Confidence 4689999999999999999999999999999886 4667778888753 33 2 3 558999999998 5666554
No 307
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.07 E-value=0.38 Score=36.13 Aligned_cols=72 Identities=14% Similarity=0.043 Sum_probs=54.4
Q ss_pred CeeEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcC-CCCCcCeEEEecCCCCccccCCCcCCChhhc--CCc-Cce
Q 019378 263 LLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLE-GSEMKPFRLTHAIPGATKSLDYDSKLTFEDS--GLA-NAM 336 (342)
Q Consensus 263 ~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~-~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~--gL~-~~~ 336 (342)
...+|.||.++|+ .+.-....++||.+|-.-|....+ +.+...-+|+.. .+. | +.+.||.+. |+. +.+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~--Gk~--L--~D~~tL~~~~~~i~~~~~ 79 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS--GKL--L--LDHQCLRDLLPKQEKRHV 79 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET--TEE--C--CSSSCHHHHSCSSSCSEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC--CEE--C--cCcCCHHHHhcCCCCCCE
Confidence 4589999999998 455556699999999999988642 566778888754 443 5 446899999 998 456
Q ss_pred EEEE
Q 019378 337 ISVT 340 (342)
Q Consensus 337 l~v~ 340 (342)
|+++
T Consensus 80 i~lv 83 (93)
T 1wgd_A 80 LHLV 83 (93)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 308
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.03 E-value=0.25 Score=37.97 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=54.6
Q ss_pred CeeEEEEECCCC----ceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceE
Q 019378 263 LLCRVGVRLPDG----RRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 337 (342)
Q Consensus 263 ~~~~i~iRlP~G----~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l 337 (342)
...+|.|+.++| +.+.-.+..++||.+|-.-|... .+.+...-+|+.. .+. | .|.++||.+.|+.+ .+|
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--gk~--L-~D~~~tL~~ygI~~g~~l 79 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-SGVPAEEAQIVYM--EQL--L-TDDHCSLGSYGLKDGDMV 79 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-TCCCGGGBCEEET--TEE--E-CCSSSBHHHHTCCTTEEE
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-HCcChHHeEEEEC--CEE--C-CCCcccHHHCCCCCCCEE
Confidence 457899999866 57888899999999999999886 4666777778754 332 5 35568999999984 556
Q ss_pred EEE
Q 019378 338 SVT 340 (342)
Q Consensus 338 ~v~ 340 (342)
+|.
T Consensus 80 ~l~ 82 (102)
T 1v5o_A 80 VLL 82 (102)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
No 309
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=94.02 E-value=0.22 Score=42.16 Aligned_cols=76 Identities=9% Similarity=-0.150 Sum_probs=42.5
Q ss_pred cCCeEEEEEe-cCCCcchhh--hhhcccCCHHHHHHHhccEEEEE-eecCChhHH---------------------HHHH
Q 019378 77 QDKWLLVNLQ-STKEFSSHM--LNRDTWANEAVSQTISTNFIFWQ-VYDDTSEGK---------------------KVCT 131 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~--f~rdvl~~~~V~~~i~~~FV~w~-~~~~s~eg~---------------------~~~~ 131 (342)
.+||++|+++ .+||+.|.. ++. + .+...+|-..++.+++ ++.++.+.. .+++
T Consensus 42 ~gk~vvL~f~pa~wcp~C~~~e~p~-l--~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~ 118 (173)
T 3mng_A 42 KGKKGVLFGVPGAFTPGCSKTHLPG-F--VEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGK 118 (173)
T ss_dssp TTSEEEEEECSCTTCHHHHHTHHHH-H--HHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHH
T ss_pred CCCcEEEEEEeCCCCCCCCHHHHHH-H--HHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHH
Confidence 4677766655 889999983 431 0 0111122233455554 555554332 2344
Q ss_pred hCCCC-------------CCcEEEEEeCCCCceEEEEeC
Q 019378 132 YYKLD-------------SIPVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 132 ~y~v~-------------~~P~l~ii~p~tG~~l~~~~G 157 (342)
.|++. ..|+.+||| .|.+...+.|
T Consensus 119 ~yGv~~~~~~~~~~g~~~~~r~tfvID--dG~I~~~~v~ 155 (173)
T 3mng_A 119 ETDLLLDDSLVSIFGNRRLKRFSMVVQ--DGIVKALNVE 155 (173)
T ss_dssp HHTCBCCSTTHHHHSSCCBCCEEEEEE--TTEEEEEEEC
T ss_pred HhCCCcccccccccCCcceEEEEEEEE--CCEEEEEEEe
Confidence 55553 348888888 6887777665
No 310
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.99 E-value=0.35 Score=40.03 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=57.3
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
...|.||.++|+.+.-....++||.+|-.-+... .+.+....+|+.. .+. + +.+.||.+.|+. +++|.+.
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gip~~~q~L~~~--G~~--L--~d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHH-HCCCHHHEEEEEC--Cee--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4789999999999999999999999999999875 4777788888864 332 4 458999999998 5667664
No 311
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=93.99 E-value=0.23 Score=36.85 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=50.3
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
..+.+. .+|+.+.-.+..++||.+|-.-+.... +.++..-+|+.. .+. | +.+.||.++|+.+ ++|.+
T Consensus 13 ~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~l~l 80 (85)
T 2kd0_A 13 IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPIT-NVLPRGQKLIFK--GKV--L--VETSTLKQSDVGSGAKLML 80 (85)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHH-CCCTTTCEEEET--TEE--C--CTTCBTTTTTCCTTEEEEE
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEEC--CeE--C--CCcCCHHHCCCCCCCEEEE
Confidence 444444 488888899999999999999998763 667778888743 442 4 4579999999985 55554
No 312
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=93.96 E-value=0.51 Score=41.49 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=56.0
Q ss_pred CC-eEEEEE-ecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH----------------------------
Q 019378 78 DK-WLLVNL-QSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK---------------------------- 127 (342)
Q Consensus 78 ~K-~LlV~l-~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~---------------------------- 127 (342)
+| |++|++ ..++|+.|..-...+ +....+|-+.++.++++++++.+..
T Consensus 30 Gk~~vvL~~~~a~~cp~C~~el~~l--~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~ 107 (224)
T 1prx_A 30 GDSWGILFSHPRDFTPVCTTELGRA--AKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRN 107 (224)
T ss_dssp TTSEEEEEEESCSSCHHHHHHHHHH--HHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTT
T ss_pred CCCeEEEEEECCCCCCCcHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCc
Confidence 44 655554 578999887542211 1111122234677777777765421
Q ss_pred -HHHHhCCCC------------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378 128 -KVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 172 (342)
Q Consensus 128 -~~~~~y~v~------------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l 172 (342)
.+++.|++. .+|+++|||| .|.+...+.|.. +.++++..|....
T Consensus 108 ~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eil~~i~~l~ 168 (224)
T 1prx_A 108 RELAILLGMLDPAEKDEKGMPVTARVVFVFGP-DKKLKLSILYPATTGRNFDEILRVVISLQ 168 (224)
T ss_dssp CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred hHHHHHhCCCCcccccCCCccccceEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 234566652 4799999998 789888876633 5678877666544
No 313
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.68 E-value=0.3 Score=37.92 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=54.6
Q ss_pred CeeEEEEECCCC---ceEEEEeCC---------CCchHHHHHHHHhhcC-CCCCcC-eEEEecCCCCccccCCCcCCChh
Q 019378 263 LLCRVGVRLPDG---RRMQRNFLR---------TDPIQLLWSYCYSQLE-GSEMKP-FRLTHAIPGATKSLDYDSKLTFE 328 (342)
Q Consensus 263 ~~~~i~iRlP~G---~r~~rrF~~---------~~~l~~l~~fv~~~~~-~~~~~~-f~L~~~fPr~~~~l~~~~~~Tl~ 328 (342)
...+|.||..+| +.+.-.|.. ++||..|-.-|....+ +.+... .+|+.. .+. | +.+.||.
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~--Gk~--L--~D~~tL~ 84 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC--GRK--L--KDDQTLD 84 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET--TEE--C--CTTCBHH
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC--CeE--C--CCCCcHH
Confidence 357899999999 778888766 6999999999988642 666777 788743 443 5 4579999
Q ss_pred hcCCc-CceEEEE
Q 019378 329 DSGLA-NAMISVT 340 (342)
Q Consensus 329 e~gL~-~~~l~v~ 340 (342)
++|+. +.+|++.
T Consensus 85 ~y~i~~g~~i~lv 97 (107)
T 1x1m_A 85 FYGIQPGSTVHVL 97 (107)
T ss_dssp HHTCCTTCEEEEE
T ss_pred HcCCCCCCEEEEE
Confidence 99998 5666554
No 314
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.62 E-value=0.55 Score=37.28 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=55.8
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc-----CCC--CCcCeEEEecCCCCccccCCCcCCChhhcCCc-
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL-----EGS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA- 333 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~-----~~~--~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~- 333 (342)
.+.+.|.||+.+|+++.-.+..++||..|-+-|.... ++. +....+|+.. .+. | +.+.||.++++.
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~--GK~--L--eD~~TL~~y~I~~ 87 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGALKLPF 87 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET--TEE--E--CSSCBTTTTTCCS
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC--CcC--C--CCCCcHHHcCCCC
Confidence 3468999999999999999999999999999998742 232 3567788765 443 5 568999999986
Q ss_pred C--ceEEEE
Q 019378 334 N--AMISVT 340 (342)
Q Consensus 334 ~--~~l~v~ 340 (342)
+ .+|+++
T Consensus 88 ~~~~tlhLv 96 (116)
T 1wgh_A 88 GKTTVMHLV 96 (116)
T ss_dssp SCEEEEEEE
T ss_pred CCceEEEEE
Confidence 3 345443
No 315
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.55 E-value=0.35 Score=39.95 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=55.5
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecC-CCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI-PGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~f-Pr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
.+|.|+..+|+.+.-.+..++||.+|-.-|.... +.++..-+|+. | ..+. | +.+.||.+.|+. +++|.+.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~QrL~~-~~~g~~--L--~d~~tL~~y~i~~~~~l~l~ 74 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKI-GVHAFQQRLAV-HPSGVA--L--QDRVPLASQGLGPGSTVLLV 74 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHH-CCCGGGEEEEE-ETTCCB--C--CTTSCGGGGTCCTTCEEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHh-CCCHHHEEEEE-cCCCCC--C--CCCCCHHHcCCCCCCEEEEE
Confidence 4788999999999999999999999999998864 66777778872 3 3443 4 668999999998 5666543
No 316
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=92.54 E-value=0.014 Score=42.27 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=51.4
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
+|.||.++|+.+.-.+..++||.+|-.-+... .+.+.....|+.. .+. + +.+.||.+.|+. +++|.+
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQ-QGVPADQLRVIFA--GKE--L--PNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 57889999998888999999999999998875 3556666777543 442 4 457999999998 455554
No 317
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=93.42 E-value=0.037 Score=45.90 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=34.2
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
..+++.|+|.++|+++| . +|+ .+.|..+++.|...|......+
T Consensus 99 ~~la~~~gI~gtPt~vi-~--nG~---~i~G~~~~~~l~~~i~~~~~~~ 141 (147)
T 3gv1_A 99 TSLGEQFGFNGTPTLVF-P--NGR---TQSGYSPMPQLEEIIRKNQQEG 141 (147)
T ss_dssp HHHHHHTTCCSSCEEEC-T--TSC---EEESCCCTTHHHHHHHHTSCC-
T ss_pred HHHHHHhCCCccCEEEE-E--CCE---EeeCCCCHHHHHHHHHHHHHhc
Confidence 34567899999999998 2 566 4789999999999888887754
No 318
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=93.29 E-value=0.37 Score=36.32 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=52.8
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..+|.||. |+.+.-.+..++||..|-.-|... .+.+....+|+.. .+. | +.+.||.+.|+. +++|.+.
T Consensus 19 ~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~qrLi~~--Gk~--L--~D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 19 SMQLFVRA--QELHTFEVTGQETVAQIKAHVASL-EGIAPEDQVVLLA--GAP--L--EDEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp -CEEEEES--SSEEEEECCSSCBHHHHHHHHHHH-HTCCGGGCEEEET--TEE--C--CTTSBHHHHTCCSSCEEEEE
T ss_pred cEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHH-hCcChhHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 46777787 888889999999999999999876 3667777888754 442 4 458999999998 5666654
No 319
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=93.20 E-value=0.39 Score=42.47 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=59.3
Q ss_pred cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378 77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV 129 (342)
Q Consensus 77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~ 129 (342)
.|||++|||+ .++++-|..=..+ -++...+|-+.+..+++++.++.... .+
T Consensus 55 ~GK~vVL~FyP~d~TpvCt~E~~~--f~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~v 132 (219)
T 3tue_A 55 KGKWVVLFFYPLDFTFVCPTEVIA--FSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNI 132 (219)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHH--HHTTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHH
T ss_pred CCCEEEEEEecccCCCCCchhHhh--HHHHHhhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHH
Confidence 5899999999 5677777553211 12233445556999999999986543 34
Q ss_pred HHhCCC----CC--CcEEEEEeCCCCceEEEEeC----CCChHHHHHHHHh
Q 019378 130 CTYYKL----DS--IPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVP 170 (342)
Q Consensus 130 ~~~y~v----~~--~P~l~ii~p~tG~~l~~~~G----~~~~~~~l~~L~~ 170 (342)
++.|++ .. +-.+.|||| .|.+...+.. .-..+++|..|..
T Consensus 133 a~~yGv~~~~~g~~~R~tFiIDp-~g~Ir~~~~~~~~~gr~~~EvLr~l~a 182 (219)
T 3tue_A 133 ARSYGVLEESQGVAYRGLFIIDP-HGMLRQITVNDMPVGRSVEEVLRLLEA 182 (219)
T ss_dssp HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HHHcCCcccCCCeeEEEEEEECC-CCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence 567776 22 347889998 6777665532 1357788776653
No 320
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=93.17 E-value=0.47 Score=40.10 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=55.2
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+|.||..+|+.+.-....++||.+|-.-+... .+.++..-+|+.. .+. | +.+.||.+.|+. +++|++.
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~~y~I~~gstI~Lv 70 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-HCCCTTTEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-HCcCHHHEEEEEC--Ccc--c--cCcCcHHHcCCCCCCEEEEE
Confidence 68899999999999999999999999999876 3677778888864 332 4 458999999998 5667654
No 321
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.13 E-value=0.33 Score=36.76 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=54.9
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
.|-|..|||+|.+-+...+.++.+|..=+-.++ ++++..|.|... ++. + |.+..|.=.||. |+.|-+
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~-gl~~~~~~Lkh~--~k~--l--DLSlpfRlsgLpnnAkLEL 78 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQ-DFNPSEYDLKFQ--RTV--L--DLSLQWRFANLPNNAKLEM 78 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHT-TCCGGGCEEEET--TEE--E--SSSCBHHHHCCCSSCEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHh-CCChhhCeEEeC--CEe--c--cccceeEecCCCCCCEEEE
Confidence 799999999999999999999999877655553 677889999976 442 4 889999999999 566644
No 322
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.08 E-value=0.66 Score=36.91 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=57.5
Q ss_pred CeeEEEEE-CCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 263 LLCRVGVR-LPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 263 ~~~~i~iR-lP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..++|.|. .|+|.+++-.|..+.+|.+|-+-+...+ +.+...-+|+.+ .+. | ..+.||.+.|+. +.+|+++
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~-~iP~e~qrLIy~--GKi--L--KD~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLL-GIPHSVLQIRYS--GKI--L--KNNETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHH-TCCTTTEEEEET--TEE--E--CSSCCHHHHSCCSSCEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhh-CCChHHEEEEEC--CeE--c--CCcchHHHcCCCCCCEEEEE
Confidence 45778887 8999999999999999999999998875 567777788765 553 5 458899999997 6777654
No 323
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=92.98 E-value=0.41 Score=40.83 Aligned_cols=76 Identities=9% Similarity=-0.002 Sum_probs=44.6
Q ss_pred cCCeEEE-EEecCCCcchhh--hhhcccCCHHHHHHHhccEE-EEEeecCChhHH---------------------HHHH
Q 019378 77 QDKWLLV-NLQSTKEFSSHM--LNRDTWANEAVSQTISTNFI-FWQVYDDTSEGK---------------------KVCT 131 (342)
Q Consensus 77 ~~K~LlV-~l~~~~~~~~~~--f~rdvl~~~~V~~~i~~~FV-~w~~~~~s~eg~---------------------~~~~ 131 (342)
.+|+++| ++..+||..|.. +.. + ++...+|-..++. +++++.++++.. .+++
T Consensus 55 ~Gk~vvL~f~~a~wcp~C~~~e~p~-l--~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~ 131 (184)
T 3uma_A 55 KGKRVVLFAVPGAFTPTCSLNHLPG-Y--LENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTK 131 (184)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHH-H--HHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHH
T ss_pred CCCCEEEEEEcCCCCCCcCHHHHHH-H--HHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHH
Confidence 4676554 455899999987 321 0 0111222234566 777777765432 2344
Q ss_pred hCCCC-----------CCcEEEEEeCCCCceEEEEeC
Q 019378 132 YYKLD-----------SIPVVLVVDPITGQKMRSWCG 157 (342)
Q Consensus 132 ~y~v~-----------~~P~l~ii~p~tG~~l~~~~G 157 (342)
.|++. ..|+.+||+ .|.+...+.|
T Consensus 132 ~yGv~~~~~~~g~g~~~~r~tfiId--dG~I~~~~~~ 166 (184)
T 3uma_A 132 AIGMEIDLSAGTLGIRSKRYSMLVE--DGVVKALNIE 166 (184)
T ss_dssp HTTCEEEEGGGTCEEEECCEEEEEE--TTEEEEEEEC
T ss_pred HcCCceeccccCCcccceeEEEEEC--CCEEEEEEEe
Confidence 55553 357788884 7888877765
No 324
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=92.85 E-value=0.36 Score=40.88 Aligned_cols=22 Identities=5% Similarity=-0.056 Sum_probs=19.1
Q ss_pred cCCeEEEEEecCCCcchhhhhh
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNR 98 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~r 98 (342)
.+|+.+|.|.+.+|..|..+..
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~ 45 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEP 45 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHH
T ss_pred CCCeEEEEEECCCCccHHHhhH
Confidence 4788999999999999999864
No 325
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.68 E-value=0.26 Score=37.63 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=52.1
Q ss_pred CCeeEEEEECCCCceE-EEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 262 SLLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~-~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
....+|.|+. .|+.+ .-.+..++||.+|-.-|... .+.+...-+|+ |..+. |. | + ||.++|+.+ .+|++
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~-tgip~~~QkLi--~~Gk~--L~-D-~-tL~~~~I~~g~~i~l 75 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFAL-TGVQPARQKVM--VKGGT--LK-D-D-DWGNIKMKNGMTVLM 75 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHH-TCCCTTTSCCE--ETTEE--CC-S-S-CCCSCCCCSSCEEEC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHH-HCcCHHHeEEE--ECCcC--CC-C-C-CHHHCCCCCCCEEEE
Confidence 3567888886 67778 48899999999999999885 57777777777 45553 53 3 4 999999984 55554
No 326
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=92.67 E-value=1.1 Score=34.36 Aligned_cols=76 Identities=7% Similarity=0.018 Sum_probs=57.1
Q ss_pred CCeeEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecC--CCCccccCCCcCCChhhcCCcC-ce
Q 019378 262 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI--PGATKSLDYDSKLTFEDSGLAN-AM 336 (342)
Q Consensus 262 ~~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~f--Pr~~~~l~~~~~~Tl~e~gL~~-~~ 336 (342)
++.++|.|..++.+ .+.++|..++||..|-.-|... .|.++..-+|+-.= ++....+ .+.++||.+.|+.+ ++
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-~Gip~~~QrLi~~g~~g~~~~~L-~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-CGTSVNSMALELYDDSGSKVAVL-SDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-HCCCTTSEEEEEECSSSCBCCCS-SGGGSCHHHHCCCSCCE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-HCcCHHHeEEEEecCCCccccee-cCCcCCHHHCCCCCCCE
Confidence 56899999987774 7999999999999999999886 47778888887531 1211012 36689999999984 55
Q ss_pred EEE
Q 019378 337 ISV 339 (342)
Q Consensus 337 l~v 339 (342)
|.|
T Consensus 90 Ihl 92 (97)
T 2kj6_A 90 LHI 92 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 327
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.65 E-value=0.64 Score=34.71 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=56.4
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 333 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 333 (342)
+.++++.|-+|--...+-|-...-+|+.|+--|-.+- ++++..+.|....=.. ...|.++||.|+||.
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kc-efdp~~~~Ll~d~~~~---e~LdLskSLndlgir 75 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKC-EFDPLHTLLLKDYQSQ---EPLDLTKSLNDLGLR 75 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHT-TCCTTSEEEESCSSCC---CBCCTTSCHHHHTCS
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcc-cCChhhEEEecCCCCC---cccchhcchhhhhhh
Confidence 4789999999999999999999999999999876653 6778899998753332 234899999999997
No 328
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=92.62 E-value=0.27 Score=35.46 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=44.7
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh--HHHHHHhCC--CCCCcEEEEEeCCCCceEEEE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE--GKKVCTYYK--LDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e--g~~~~~~y~--v~~~P~l~ii~p~tG~~l~~~ 155 (342)
++.++.+||..|+.+.. + +.++.. .++-+..+|++... ...++..|+ +.++|++. + +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~-~-----l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~-~---~g~~i--- 69 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKD-L-----AEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF-V---DQQHI--- 69 (85)
T ss_dssp EEEECCTTSTHHHHHHH-H-----HHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE-E---TTEEE---
T ss_pred EEEEeCCCCCCHHHHHH-H-----HHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEE-E---CCEEE---
Confidence 56778899999999852 2 222221 35666666664322 246888898 89999984 4 46654
Q ss_pred eCCCChHHHHHHHHh
Q 019378 156 CGMVQPESLLEDLVP 170 (342)
Q Consensus 156 ~G~~~~~~~l~~L~~ 170 (342)
.|. +++...+..
T Consensus 70 ~~~---~~l~~~~~~ 81 (85)
T 1ego_A 70 GGY---TDFAAWVKE 81 (85)
T ss_dssp ESS---HHHHHHHHH
T ss_pred ECH---HHHHHHHHH
Confidence 343 455554443
No 329
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=92.56 E-value=0.35 Score=41.79 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=55.9
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
..+|.||..+|+.+.-....++||.+|-.-|.... +.+....+|+. -.+. | +.+.||.+.|+. +++|.+.
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~-gIp~~~QrLi~--~Gk~--L--~D~~tL~dygI~~gstI~Lv 175 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 175 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEE--TTEE--C--CTTCBGGGGTCCTTCEEEEC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhcc-CCCHHHEEEEE--CCEE--C--CCCCCHHHCCCCCCCEEEEE
Confidence 36899999999999999999999999999998763 66667777874 3443 5 448999999998 5666653
No 330
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.28 E-value=0.19 Score=38.80 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=52.6
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~ 340 (342)
.++|.|+. +|+.+.-.+..++||..|-.-|.... +.+...-+|+.. .+. | +.+.||.++|+.+ ++|.+.
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIYS--GKI--L--KDDQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHH-SCCSTTCCEEET--TEE--C--CTTSBTTTTTCCTTEEEEEC
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 46788886 88888889999999999999998864 666667777753 332 4 4589999999984 556553
No 331
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=92.14 E-value=1.2 Score=35.31 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=55.7
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
...++|.|+-.||+.+..+...++++..|++...... +.+...++|+-. ... + +.+.|.+++|+- +.+|-|.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~-Gl~~~~irFlFD--G~r--I--~~~~TP~dL~MEDgD~IdV~ 110 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEVY 110 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHH-TCCTTSEEEEET--TEE--C--CTTCCTTTTTCCTTCEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHh-CCChhhEEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 4588999999999999999999999999998755543 666777887654 432 3 568999999998 5666543
No 332
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=91.82 E-value=0.71 Score=34.52 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=52.6
Q ss_pred CeeEEEEECCCCceEEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEec-CCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 263 LLCRVGVRLPDGRRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-IPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
...+|.|+. +|+.+.- ....++||.+|-.-|... .+.+...-+|+-. |=.+ .+ +.+.||.++|+.+ .+|++
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~-~gip~~~QkLi~~k~~Gk--~L--~D~~~L~~~~i~~g~~l~l 79 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTL-TGVLPERQKLLGLKVKGK--PA--ENDVKLGALKLKPNTKIMM 79 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHH-TCCCTTTCEEESCEETTE--EC--CTTSBHHHHTCCTTEEEEE
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHH-HCcCHHHeEEEeeccCCc--Cc--CCCCCHHHcCCCCCCEEEE
Confidence 357788886 7887777 778999999999999885 5777788888732 2233 24 4479999999984 55554
No 333
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=91.40 E-value=0.58 Score=41.01 Aligned_cols=89 Identities=8% Similarity=0.075 Sum_probs=54.8
Q ss_pred cCC-eEEEEE-ecCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhH------------------------
Q 019378 77 QDK-WLLVNL-QSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG------------------------ 126 (342)
Q Consensus 77 ~~K-~LlV~l-~~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg------------------------ 126 (342)
.+| |++|++ ..++|+.|..-. +.+.++. ..++.++++++++.+.
T Consensus 29 ~Gk~~vvL~f~~a~~cp~C~~el------~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D 102 (220)
T 1xcc_A 29 IENSWAILFSHPNDFTPVCTTEL------AELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCD 102 (220)
T ss_dssp TTTSEEEEECCSCTTCHHHHHHH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEEC
T ss_pred cCCCeEEEEEECCCCCCCCHHHH------HHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEEC
Confidence 355 666655 467888886532 2222222 3467777777766432
Q ss_pred --HHHHHhCCCC------------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHhhh
Q 019378 127 --KKVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFM 172 (342)
Q Consensus 127 --~~~~~~y~v~------------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~~l 172 (342)
..+++.|++. .+|+++|||| .|.+...+.|. .+.++++..|....
T Consensus 103 ~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~-~G~I~~~~~~~~~~g~~~~ell~~i~~lq 165 (220)
T 1xcc_A 103 ESRELANKLKIMDEQEKDITGLPLTCRCLFFISP-EKKIKATVLYPATTGRNAHEILRVLKSLQ 165 (220)
T ss_dssp TTSHHHHHHTCEEEEEECTTSCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred chhHHHHHhCCCCcccccCCCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 1234566662 3799999998 78988777653 35778877666543
No 334
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=91.30 E-value=0.96 Score=42.02 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=57.8
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
++..+|.||..+|+.+.-.+..++||.+|-.-|... .+.+...-+|+.. .+. | +.+.||.+.|+. +++|.+.
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~-~GIp~~~QRLi~~--Gk~--L--~D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-HCCCGGGCEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcChHHEEEEeC--Cee--c--CCCCCHHHcCCCCCCEEEEE
Confidence 356899999999999999999999999999999876 3666777788754 442 4 458999999998 5666654
No 335
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=91.24 E-value=0.41 Score=42.14 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=51.8
Q ss_pred ECCCC-ceEEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 270 RLPDG-RRMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 270 RlP~G-~r~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+.++. ..++..|.+.+|+..|+..+...+ +.+. ..++|-.-+....+.+..+.++||+|++|. +..|+|+
T Consensus 134 ~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~-~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 134 ENGNMNNVVTRRFSKADTIDTIEKEIRKIF-SIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp ETTEEEEEEEEEECTTSBHHHHHHHHHHHT-TCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred ecCCCCcceEEEEcccchHHHHHHHHHHHh-CCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 34443 347799999999999999998875 4444 478887655444455556788999999998 6677775
No 336
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=91.17 E-value=1.2 Score=38.74 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=54.9
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
...++|.|+. +|+.+..+...++++..|+...... .|.+...++|.-. ++. + ..+.|.+++|+- +.+|-|.
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er-~Gi~~~~~RF~Fd--G~r--I--~~~~TP~dL~MEdgD~Idv~ 98 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEAH 98 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHH-HSSCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHH-hCCChhhEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 5678999986 9999999999999999999765443 3667777887654 443 3 568999999998 5666554
No 337
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=90.79 E-value=1.4 Score=32.79 Aligned_cols=72 Identities=8% Similarity=0.044 Sum_probs=51.6
Q ss_pred eeEEEEECC--CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec-----CCCCccccCCCcCCChhhcCCc-Cc
Q 019378 264 LCRVGVRLP--DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-----IPGATKSLDYDSKLTFEDSGLA-NA 335 (342)
Q Consensus 264 ~~~i~iRlP--~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-----fPr~~~~l~~~~~~Tl~e~gL~-~~ 335 (342)
+++|.|... +++...+||..++||..|-+-|... .|.++..-+|+-. |..+ + .+.+.||.+.|+. +.
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-~Gip~~~QrLi~~~~~~~~~g~---~-l~d~~tL~~Y~i~~g~ 76 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-FATPPEYMQLQLIDDRGITIEK---N-MANDKQLGYYQCRDEF 76 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-SCCCGGGEEEEEECTTSCEEES---S-CCTTSBGGGGTCCTTC
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-HCCCHHHEEEEEecCCCCceee---E-cCCCCCHHHCCCCCCC
Confidence 456666632 3344689999999999999999875 5777777777632 2222 2 4678999999998 56
Q ss_pred eEEEE
Q 019378 336 MISVT 340 (342)
Q Consensus 336 ~l~v~ 340 (342)
+|+|+
T Consensus 77 ~ihlv 81 (86)
T 4b6w_A 77 VIHVV 81 (86)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 67654
No 338
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.60 E-value=0.93 Score=40.26 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=48.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 276 RMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 276 r~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
.++.+|.+.+|+..|+..+...+ +.+. ..++|-.-+-...+.+..+.++||+|++|. +..|+++
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~-~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLF-NIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHT-TCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eEEEEecccCcHHHHHHHHHHHh-CCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 35699999999999999998865 4444 379998755444445556788999999999 5666664
No 339
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=90.53 E-value=0.63 Score=44.39 Aligned_cols=69 Identities=7% Similarity=0.144 Sum_probs=54.7
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc--CCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceE
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 337 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l 337 (342)
...+|.||..+|+.+.-.+..++||.+|-.-|.... .+.+...-+|+. -.+. | +.++||.++|+.+ ++|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy--~GK~--L--~D~~tL~dygI~~gstI 77 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKI--L--SDDVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES--SSSE--E--CSSSBTTTTCCCTTSCE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE--CCee--c--CCcCCHHHcCCCCCCEE
Confidence 467899999999999999999999999999998742 356667778874 3553 5 4479999999984 555
No 340
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=90.52 E-value=0.9 Score=38.08 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=56.0
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
...|.|+..+|+.+.-++..++||..|-.-|... .+.+....+|+.. .+. + +.+.||.+.|+. +++|.+.
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gip~~~q~L~~~--g~~--L--~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHH-HCCCGGGCCEEET--TEE--C--CTTSBSGGGTCCTTCEEEEC
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHH-hCCCceeEEEEEC--Ccc--C--CCCCcHHHhCCCCCCEEEEE
Confidence 4678889999999999999999999999999886 3677778888754 432 4 458899999998 5666653
No 341
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=90.51 E-value=1.8 Score=36.32 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
++..++|.++|+++ |+ |+.+ +.|..+.+.|...|...+..
T Consensus 142 ~a~~~gv~gtPt~v-in---g~~~--~~g~~~~~~l~~~i~~~l~~ 181 (195)
T 2znm_A 142 LTEQYRIDSTPTVI-VG---GKYR--VIFNNGFDGGVHTIKELVAK 181 (195)
T ss_dssp HHHHTTCCSSSEEE-ET---TTEE--ECCCSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCeEE-EC---CEEE--EcCCCCHHHHHHHHHHHHHH
Confidence 45688999999954 43 6643 56777888888888887764
No 342
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=90.34 E-value=0.99 Score=34.95 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=50.0
Q ss_pred eEEEEECCCCceEEEEeC-CCCchHHHHHHHHhhcCCCCCcCeEEE-ecCC------CCccccC--CCcCCChhhcCCcC
Q 019378 265 CRVGVRLPDGRRMQRNFL-RTDPIQLLWSYCYSQLEGSEMKPFRLT-HAIP------GATKSLD--YDSKLTFEDSGLAN 334 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~-~~~~l~~l~~fv~~~~~~~~~~~f~L~-~~fP------r~~~~l~--~~~~~Tl~e~gL~~ 334 (342)
..|+||-++|+. .-... .+++|..|..-|.... +.+....+|. .+.| .....+. .+.+.||.+.||.+
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~-gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQL-QIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHS-CCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHh-CcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 579999999974 34566 8899999999998864 5566666664 2221 1000121 36789999999985
Q ss_pred -ceEEEE
Q 019378 335 -AMISVT 340 (342)
Q Consensus 335 -~~l~v~ 340 (342)
.+|+|+
T Consensus 86 G~~L~l~ 92 (107)
T 1wf9_A 86 GSMVYLA 92 (107)
T ss_dssp TCEEECC
T ss_pred CCEEEEE
Confidence 555553
No 343
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=90.31 E-value=0.77 Score=37.65 Aligned_cols=75 Identities=8% Similarity=0.092 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhH-HHHHHhCCCCCCcEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIPVV 141 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg-~~~~~~y~v~~~P~l 141 (342)
.+..+.+..+...++ ++| +..+||..|..+.. +.+-+.-.|..+.++.+. ++. ..++..|++.++|+|
T Consensus 36 ~~~~~~~~~~i~~~~-Vvv-f~~~~Cp~C~~~k~-------~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i 106 (146)
T 2ht9_A 36 TAPVNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI 106 (146)
T ss_dssp TCCHHHHHHHHHHCS-EEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE
T ss_pred hHHHHHHHHHhcCCC-EEE-EECCCChhHHHHHH-------HHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeE
Confidence 345566666666664 444 67899999998742 222233466666555441 222 247788999999998
Q ss_pred EEEeCCCCceE
Q 019378 142 LVVDPITGQKM 152 (342)
Q Consensus 142 ~ii~p~tG~~l 152 (342)
. + +|+.+
T Consensus 107 f-i---~G~~i 113 (146)
T 2ht9_A 107 F-V---NGTFI 113 (146)
T ss_dssp E-E---TTEEE
T ss_pred E-E---CCEEE
Confidence 5 4 46643
No 344
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=90.30 E-value=0.96 Score=39.15 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=53.2
Q ss_pred CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
+...++|.|+. +|+.+..+...+++|..|++..... .+.+...++|+-. ... + +.+.|.+++++- +.+|-|
T Consensus 54 p~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcER-qGL~~~sIRFLFD--GqR--I--~~ddTPeDLdMEDGDtIDV 125 (207)
T 3tix_A 54 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLTFLYD--GIE--I--QADQTPEDLDMEDNDIIEA 125 (207)
T ss_dssp -CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-TTCCGGGSCEEET--TEE--C--CSSCCTTTTTCCTTEEEEE
T ss_pred CCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHH-hCCCcccEEEEEC--Cee--c--CCCCCHHHcCCCCCCEEEE
Confidence 35688999985 9999999999999999999876554 3666666666543 332 3 568999999998 566654
No 345
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=90.25 E-value=1.3 Score=36.83 Aligned_cols=56 Identities=7% Similarity=-0.042 Sum_probs=32.9
Q ss_pred cC-CeEEEEEecCCCcchhh--hhhcccCCHHHHHHHhccEE-EEEeecCChhH-HHHHHhCCC
Q 019378 77 QD-KWLLVNLQSTKEFSSHM--LNRDTWANEAVSQTISTNFI-FWQVYDDTSEG-KKVCTYYKL 135 (342)
Q Consensus 77 ~~-K~LlV~l~~~~~~~~~~--f~rdvl~~~~V~~~i~~~FV-~w~~~~~s~eg-~~~~~~y~v 135 (342)
.+ +.+|+++..+||..|.. +. .+ ++...++-..++. +++++.++.+. ..+++.+++
T Consensus 42 ~gk~vvl~~~~a~wcp~C~~eh~p-~l--~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~ 102 (171)
T 2pwj_A 42 KDKKVVIFGLPGAYTGVCSSKHVP-PY--KHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQA 102 (171)
T ss_dssp TTSEEEEEECSCTTCTTHHHHTHH-HH--HHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTC
T ss_pred CCCCEEEEEecCCCCCCCCHHHHH-HH--HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 45 46778899999999986 32 11 1112223334677 77877776553 345555554
No 346
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=90.02 E-value=0.057 Score=43.58 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+|.|+..+|+.+.-.+..++||.+|-.-|... .+.++....|+. -.+. | +.+.||.+.|+. +++|.+.
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L--~D~~tL~~~~I~~gsti~l~ 70 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 70 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-hCcChHHEEEEE--CCEE--C--CCCCchhhhccCCCCEEEEE
Confidence 57788999999988999999999999998875 466666677763 3443 4 558999999998 4556543
No 347
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=89.84 E-value=1.7 Score=31.66 Aligned_cols=72 Identities=17% Similarity=0.078 Sum_probs=45.1
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh-H----HHHHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-G----KKVCTYYKLDSIPVVLVVDPITGQKMRSWC 156 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e-g----~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~ 156 (342)
++.++.++|..|.... .+.+-+.-.|....++....+ . ..+...+++.++|.+.+ +|+ .+.
T Consensus 14 v~ly~~~~Cp~C~~~~-------~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~----~g~---~i~ 79 (92)
T 3ic4_A 14 VLMYGLSTCPHCKRTL-------EFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK----GDK---HVL 79 (92)
T ss_dssp SEEEECTTCHHHHHHH-------HHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE----TTE---EEE
T ss_pred EEEEECCCChHHHHHH-------HHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE----CCE---EEe
Confidence 3445678999999863 122223345666655543332 2 45677889999999986 354 355
Q ss_pred CCCChHHHHHHH
Q 019378 157 GMVQPESLLEDL 168 (342)
Q Consensus 157 G~~~~~~~l~~L 168 (342)
|+ +++.+...|
T Consensus 80 G~-~~~~l~~~l 90 (92)
T 3ic4_A 80 GY-NEEKLKELI 90 (92)
T ss_dssp SC-CHHHHHHHH
T ss_pred CC-CHHHHHHHh
Confidence 65 888776655
No 348
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.57 E-value=1.1 Score=33.43 Aligned_cols=71 Identities=11% Similarity=-0.028 Sum_probs=50.9
Q ss_pred eEEEEECCCCceEE--E-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378 265 CRVGVRLPDGRRMQ--R-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 265 ~~i~iRlP~G~r~~--r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
..|-|+...|+... - ....++||.+|-.-|....++.++..-+|+..+=++ .| +.+.||++.|+.+ ++|+|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk--~L--~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGK--SL--KDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSC--CC--CTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCc--Cc--CCCCCHHHcCCCCCCEEEE
Confidence 56778888887642 4 788999999999999874456666666776443233 24 5589999999985 44554
No 349
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=89.50 E-value=1.9 Score=37.68 Aligned_cols=78 Identities=8% Similarity=0.098 Sum_probs=47.3
Q ss_pred HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378 75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 154 (342)
Q Consensus 75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~ 154 (342)
....+++.+.+.+..+.-...+ ..++.....|.+..-.++ ...+++.|+|..+|+++++++ +|+.. .
T Consensus 154 ~~~~~~~al~f~~~~~~~~~~~---------~~d~~~~~~i~v~~~~~~--~~~l~~~f~v~~~Pslvl~~~-~g~~~-~ 220 (244)
T 3q6o_A 154 RNNEEYLALIFEXGGSYLAREV---------ALDLSQHKGVAVRRVLNT--EANVVRKFGVTDFPSCYLLFR-NGSVS-R 220 (244)
T ss_dssp HCCCSEEEEEEECTTCCHHHHH---------HHHTTTCTTEEEEEEETT--CHHHHHHHTCCCSSEEEEEET-TSCEE-E
T ss_pred cCCCceEEEEEEECCcchHHHH---------HHHhccCCceEEEEEeCc--hHHHHHHcCCCCCCeEEEEeC-CCCeE-e
Confidence 3677899888888764333332 334444333444433332 256889999999999999996 66643 3
Q ss_pred EeCCCChHHHH
Q 019378 155 WCGMVQPESLL 165 (342)
Q Consensus 155 ~~G~~~~~~~l 165 (342)
+....+..+++
T Consensus 221 ~~~~~~~r~~~ 231 (244)
T 3q6o_A 221 VPVLMESRSFY 231 (244)
T ss_dssp CCCSSSSHHHH
T ss_pred eccccccHHHH
Confidence 33334444443
No 350
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=89.27 E-value=0.88 Score=34.20 Aligned_cols=60 Identities=8% Similarity=0.073 Sum_probs=37.0
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecCC--hhH-HHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDT--SEG-KKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~s--~eg-~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
++.+..+||..|+.+.. +.+-+... |.++-++.+. ++. ..+...+++.++|++. + .|+.+
T Consensus 14 v~~f~~~~C~~C~~~~~-------~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~-~---~g~~i 79 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQE-------LLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF-I---GKECI 79 (105)
T ss_dssp EEEEECSSCHHHHHHHH-------HHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE-E---TTEEE
T ss_pred EEEEEcCCCHhHHHHHH-------HHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE-E---CCEEE
Confidence 45567899999998742 11222223 7776555442 232 2477889999999984 4 36643
No 351
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=89.24 E-value=1.5 Score=33.59 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCC---hhHHH-HHHhCCCCC
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT---SEGKK-VCTYYKLDS 137 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s---~eg~~-~~~~y~v~~ 137 (342)
..+.+.++...+.++ ++.+..+||..|+... .+|+ -.|..+-++... .+... +...++..+
T Consensus 6 ~~~~~~~~~~i~~~~--v~vy~~~~Cp~C~~~~----------~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~t 73 (113)
T 3rhb_A 6 SRMEESIRKTVTENT--VVIYSKTWCSYCTEVK----------TLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHT 73 (113)
T ss_dssp CHHHHHHHHHHHHSS--EEEEECTTCHHHHHHH----------HHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHhcCC--EEEEECCCChhHHHHH----------HHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCC
Confidence 456667777777777 4556778999999863 3443 356665555432 23222 556678999
Q ss_pred CcEEEEEeCCCCceE
Q 019378 138 IPVVLVVDPITGQKM 152 (342)
Q Consensus 138 ~P~l~ii~p~tG~~l 152 (342)
+|.|. | +|+.+
T Consensus 74 vP~if-i---~g~~i 84 (113)
T 3rhb_A 74 VPNVF-V---CGKHI 84 (113)
T ss_dssp SCEEE-E---TTEEE
T ss_pred cCEEE-E---CCEEE
Confidence 99994 4 46643
No 352
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.13 E-value=2 Score=32.24 Aligned_cols=74 Identities=14% Similarity=-0.013 Sum_probs=54.4
Q ss_pred eeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCC-CCcc-ccCCCcCCChhhcCCcC-ceEEE
Q 019378 264 LCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIP-GATK-SLDYDSKLTFEDSGLAN-AMISV 339 (342)
Q Consensus 264 ~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fP-r~~~-~l~~~~~~Tl~e~gL~~-~~l~v 339 (342)
.++|.|+..++. .+.+++..++||..|-.-|... .|.++..-+|+..-+ .+.. .+ .+.++||.+.|+.+ .+|+|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-~gip~~~qrL~~~~~~g~~~~~l-~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-VGSPASCMELELYGADDKFYSKL-DQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-TCSCTTTCBCEEECSSSCEEEEC-CCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-HCCCHHHeEEEEeCCCCcccccc-CCCcCCHhHCCCCCCCEEEE
Confidence 478888877664 6999999999999999999886 577777777776432 2210 12 25689999999984 55655
No 353
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=89.07 E-value=3.5 Score=31.52 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=52.6
Q ss_pred CCeeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEE
Q 019378 262 SLLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMIS 338 (342)
Q Consensus 262 ~~~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~ 338 (342)
+..++|.|+-++|+ .+..+...+.+++.|++..... .+.....++|+-. ... + +.+.|-+++|+-. ..|-
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~-~g~~~~~vrF~FD--G~r--I--~~~~TP~dLdMEDgD~ID 94 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEA-MGLSGRKLSFFFD--GTK--L--SGRELPADLGMESGDLIE 94 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHH-TTCSSSCCEEEET--TEE--C--CSCSCHHHHTCCTTEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHH-HCCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEE
Confidence 56789999999995 7899999999999999876554 2555566777653 332 3 6689999999984 4443
No 354
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=88.40 E-value=2.4 Score=29.21 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=41.0
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCC
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 160 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~ 160 (342)
++.++.++|..|+.... +.+-+.=.|... +++. ++.......|++.++|++.+ +|+. +.| .+
T Consensus 3 i~~y~~~~C~~C~~~~~-------~l~~~~i~~~~~--di~~~~~~~~~~~~~~~~~vP~l~~----~g~~---~~g-~~ 65 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKK-------ALDRAGLAYNTV--DISLDDEARDYVMALGYVQAPVVEV----DGEH---WSG-FR 65 (75)
T ss_dssp EEEEECTTCHHHHHHHH-------HHHHTTCCCEEE--ETTTCHHHHHHHHHTTCBCCCEEEE----TTEE---EES-CC
T ss_pred EEEEeCCCChHHHHHHH-------HHHHcCCCcEEE--ECCCCHHHHHHHHHcCCCccCEEEE----CCeE---EcC-CC
Confidence 45678889999998632 111122245444 5543 33334445799999999873 3553 556 46
Q ss_pred hHHHHHHH
Q 019378 161 PESLLEDL 168 (342)
Q Consensus 161 ~~~~l~~L 168 (342)
++.+...|
T Consensus 66 ~~~l~~~l 73 (75)
T 1r7h_A 66 PERIKQLQ 73 (75)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 355
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=88.24 E-value=3.3 Score=32.74 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=55.5
Q ss_pred CeeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecC-CCCcc-ccCCCcCCChhhcCCcC-ceEE
Q 019378 263 LLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI-PGATK-SLDYDSKLTFEDSGLAN-AMIS 338 (342)
Q Consensus 263 ~~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~f-Pr~~~-~l~~~~~~Tl~e~gL~~-~~l~ 338 (342)
..++|.|+..++. .+.+++..++||..|-.-|... .|.++..-+|+-.= ..+.. .+ .+.+.||.+.|+.+ .+|+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-~Gip~~~qrL~~~g~~~~~~~~l-~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-VGTTVDSMRIQLFDGDDQLKGEL-TDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-HCCCTTTEEEEEECSSSSEEEEC-CCCSSBTTTTTCCSSEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-hCCCHHHeEEEEecCCCcccccc-CCCcCCHHHCCCCCCCEEE
Confidence 3688888887664 6999999999999999999886 47777888887531 11210 12 25689999999984 5566
Q ss_pred EE
Q 019378 339 VT 340 (342)
Q Consensus 339 v~ 340 (342)
|+
T Consensus 83 vv 84 (122)
T 1t0y_A 83 AV 84 (122)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 356
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=88.01 E-value=1.8 Score=32.56 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=45.0
Q ss_pred EEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecC-ChhHHHHHH-h-CCCCCCcEEEEEeCCCCceEEEEe
Q 019378 83 VNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDD-TSEGKKVCT-Y-YKLDSIPVVLVVDPITGQKMRSWC 156 (342)
Q Consensus 83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~-s~eg~~~~~-~-y~v~~~P~l~ii~p~tG~~l~~~~ 156 (342)
+.+..++|+.|... +++|+++ |... |++ ++++.+... . .+..++|.|.|-| |+.+ .
T Consensus 7 ~vYs~~~Cp~C~~a----------K~~L~~~gi~y~~i--di~~d~~~~~~~~~~~~G~~tVP~I~i~D---g~~l---~ 68 (92)
T 2lqo_A 7 TIYTTSWCGYCLRL----------KTALTANRIAYDEV--DIEHNRAAAEFVGSVNGGNRTVPTVKFAD---GSTL---T 68 (92)
T ss_dssp EEEECTTCSSHHHH----------HHHHHHTTCCCEEE--ETTTCHHHHHHHHHHSSSSSCSCEEEETT---SCEE---E
T ss_pred EEEcCCCCHhHHHH----------HHHHHhcCCceEEE--EcCCCHHHHHHHHHHcCCCCEeCEEEEeC---CEEE---e
Confidence 34456799999986 4566653 4433 554 455555443 3 2678999988744 5543 3
Q ss_pred CCCChHHHHHHHHhhhh
Q 019378 157 GMVQPESLLEDLVPFMD 173 (342)
Q Consensus 157 G~~~~~~~l~~L~~~l~ 173 (342)
| .+++++...|.+...
T Consensus 69 ~-~~~~el~~~L~el~g 84 (92)
T 2lqo_A 69 N-PSADEVKAKLVKIAG 84 (92)
T ss_dssp S-CCHHHHHHHHHHHHC
T ss_pred C-CCHHHHHHHHHHhcC
Confidence 3 578888887776643
No 357
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=87.53 E-value=1.6 Score=34.14 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=46.6
Q ss_pred CcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCCh--hH-HHHHH
Q 019378 61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTS--EG-KKVCT 131 (342)
Q Consensus 61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s~--eg-~~~~~ 131 (342)
.|......+.++.+.+..+ ++.+..+||..|... ++.+|.+ .|..+-++.+.. +. ..+..
T Consensus 8 ~~~~~~~~~~~~~~i~~~~--Vvvf~~~~Cp~C~~a---------lk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~ 76 (118)
T 3c1r_A 8 HMVSQETIKHVKDLIAENE--IFVASKTYCPYCHAA---------LNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYE 76 (118)
T ss_dssp CCSCHHHHHHHHHHHHHSS--EEEEECSSCHHHHHH---------HHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHccCc--EEEEEcCCCcCHHHH---------HHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHH
Confidence 3555666677777766665 344677899999987 1333332 355544443321 12 34777
Q ss_pred hCCCCCCcEEEEEeCCCCce
Q 019378 132 YYKLDSIPVVLVVDPITGQK 151 (342)
Q Consensus 132 ~y~v~~~P~l~ii~p~tG~~ 151 (342)
.|++.++|.|. + +|+.
T Consensus 77 ~~g~~tvP~vf-i---~g~~ 92 (118)
T 3c1r_A 77 INGQRTVPNIY-I---NGKH 92 (118)
T ss_dssp HHSCCSSCEEE-E---TTEE
T ss_pred HhCCCCcCEEE-E---CCEE
Confidence 89999999874 4 3664
No 358
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=87.30 E-value=1.7 Score=30.68 Aligned_cols=54 Identities=6% Similarity=0.048 Sum_probs=33.4
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
++.++.++|..|+.+.. +| +-..-.|..+-++.+......+...+++.++|++.
T Consensus 3 i~~y~~~~C~~C~~~~~-~l------~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~ 56 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKA-LL------SSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56 (82)
T ss_dssp EEEEECSSCHHHHHHHH-HH------HHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred EEEEECCCChhHHHHHH-HH------HHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 34567889999998631 11 11223465554443333334577889999999985
No 359
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=86.59 E-value=0.13 Score=42.94 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 340 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~ 340 (342)
+|.|+..+|+.+.-.+..++||.+|-.-|... .+.++...+|+. -.+. | +.+.||.+.|+. +++|.+.
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L--~D~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCEE--c--cccCcHHHcCCCCCCEEEEE
Confidence 57889999998888899999999999998875 366666667763 3443 4 457999999998 4566543
No 360
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=86.59 E-value=3.5 Score=34.30 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=28.6
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
++..++|.++|+++ |+ |+.+ +.|. +.+.|...|...+..
T Consensus 147 ~a~~~gv~gtPt~v-in---g~~~--~~g~-~~~~l~~~i~~~~~~ 185 (193)
T 2rem_A 147 YALKVRPVGTPTIV-VN---GRYM--VTGH-DFEDTLRITDYLVSR 185 (193)
T ss_dssp HHHHHCCSSSSEEE-ET---TTEE--ECCS-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeEE-EC---CEEE--ecCC-CHHHHHHHHHHHHHH
Confidence 35678999999955 43 6643 4677 889998888777653
No 361
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=86.23 E-value=1.9 Score=30.52 Aligned_cols=66 Identities=17% Similarity=0.358 Sum_probs=39.0
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCC
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 160 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~ 160 (342)
++.++.++|..|+.+.. +| +-+.-.|.. +|++. ++.......|++.++|++ +++ |+. +.| .+
T Consensus 3 v~~f~~~~C~~C~~~~~-~l------~~~~i~~~~--vdi~~~~~~~~~~~~~g~~~vP~~-~~~---g~~---~~g-~~ 65 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKR-AM------ENRGFDFEM--INVDRVPEAAEALRAQGFRQLPVV-IAG---DLS---WSG-FR 65 (81)
T ss_dssp EEEEECTTCHHHHHHHH-HH------HHTTCCCEE--EETTTCHHHHHHHHHTTCCSSCEE-EET---TEE---EES-CC
T ss_pred EEEEcCCCChhHHHHHH-HH------HHCCCCeEE--EECCCCHHHHHHHHHhCCCccCEE-EEC---CEE---Eec-CC
Confidence 46678899999998742 11 112224544 45653 444444456899999998 443 553 445 45
Q ss_pred hHHH
Q 019378 161 PESL 164 (342)
Q Consensus 161 ~~~~ 164 (342)
++++
T Consensus 66 ~~~l 69 (81)
T 1h75_A 66 PDMI 69 (81)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 362
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.95 E-value=3.9 Score=31.36 Aligned_cols=70 Identities=9% Similarity=0.041 Sum_probs=50.9
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 340 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~ 340 (342)
...+.+++ +|+.+.-.+..++||..|-.-|... .|.++..=+|+ .||... + +.+.||.+.||.+ ++|+++
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~-tgIpp~~QkLi-~~~~gk--L--~D~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENE-LQIPVSKMLLK-GWKTGD--V--EDSTVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHH-HCCCTTTCCEE-CCSSSC--C--CTTSBHHHHCCCSEEEEEEC
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHH-HCCChhHeEEE-ccCCCC--C--CCcCCHHHcCCCCCCEEEEE
Confidence 45677777 6677888899999999999998875 46665555563 355543 4 4589999999985 556554
No 363
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=85.65 E-value=2.9 Score=31.60 Aligned_cols=72 Identities=11% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 68 EKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 68 ~eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
.+-+....+.++ ++||..+ +||..|+...+ +| +-++-.|..+-++.+......+...++..++|.|.
T Consensus 7 ~~~~~~~i~~~~-vvvf~~g~~~~~~C~~C~~~~~-~L------~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~- 77 (105)
T 2yan_A 7 EERLKVLTNKAS-VMLFMKGNKQEAKCGFSKQILE-IL------NSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY- 77 (105)
T ss_dssp HHHHHHHHTSSS-EEEEESBCSSSBCTTHHHHHHH-HH------HHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE-
T ss_pred HHHHHHHhccCC-EEEEEecCCCCCCCccHHHHHH-HH------HHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE-
Confidence 344445555554 6666652 89999998632 11 11222455554443322223466778999999985
Q ss_pred EeCCCCce
Q 019378 144 VDPITGQK 151 (342)
Q Consensus 144 i~p~tG~~ 151 (342)
+ +|+.
T Consensus 78 i---~g~~ 82 (105)
T 2yan_A 78 V---KGEL 82 (105)
T ss_dssp E---TTEE
T ss_pred E---CCEE
Confidence 4 4664
No 364
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=85.61 E-value=1.3 Score=34.12 Aligned_cols=63 Identities=3% Similarity=-0.092 Sum_probs=36.9
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhH-HHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIPVVLVVDPITGQKM 152 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg-~~~~~~y~v~~~P~l~ii~p~tG~~l 152 (342)
+|.+..++|..|..+.. +|..-.+. ..+|..+-++.+. .+. ..+...|++.++|+++ + +|+.+
T Consensus 21 vv~f~~~~Cp~C~~~~~-~L~~~~~~---~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~-i---~g~~i 86 (114)
T 2hze_A 21 VTIFVKYTCPFCRNALD-ILNKFSFK---RGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIF-F---GKTSI 86 (114)
T ss_dssp EEEEECTTCHHHHHHHH-HHTTSCBC---TTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE-E---TTEEE
T ss_pred EEEEEeCCChhHHHHHH-HHHHcCCC---cCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEE-E---CCEEE
Confidence 45567889999998742 22221110 0116665544443 122 3577889999999875 3 36654
No 365
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=85.49 E-value=1.7 Score=31.21 Aligned_cols=60 Identities=5% Similarity=-0.076 Sum_probs=35.5
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh--hHHHHHHhCCC-----CCCcEEEEEeCCCCceE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKL-----DSIPVVLVVDPITGQKM 152 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~--eg~~~~~~y~v-----~~~P~l~ii~p~tG~~l 152 (342)
++.++.++|..|+.... +.+-..-.|-...++.... ....+...++. .++|.+.| +|+.+
T Consensus 6 v~ly~~~~Cp~C~~~~~-------~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i----~g~~i 72 (89)
T 3msz_A 6 VKIYTRNGCPYCVWAKQ-------WFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI----DDEHI 72 (89)
T ss_dssp EEEEECTTCHHHHHHHH-------HHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE----TTEEE
T ss_pred EEEEEcCCChhHHHHHH-------HHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE----CCEEE
Confidence 56677789999998631 1122222455554444322 12357777777 99999964 46643
No 366
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=84.32 E-value=2.8 Score=33.83 Aligned_cols=67 Identities=10% Similarity=0.185 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhH-HHHHHhCCCC
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG-KKVCTYYKLD 136 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg-~~~~~~y~v~ 136 (342)
.+..+.++...+.++ +.||..+ ++|..|... +++|++ .|..+-++.+ ++. ..+...++..
T Consensus 22 ~~~~~~v~~~i~~~~-Vvvy~ks~~~~~~Cp~C~~a----------k~~L~~~gv~y~~vdI~~d-~~~~~~L~~~~G~~ 89 (135)
T 2wci_A 22 STTIEKIQRQIAENP-ILLYMKGSPKLPSCGFSAQA----------VQALAACGERFAYVDILQN-PDIRAELPKYANWP 89 (135)
T ss_dssp CHHHHHHHHHHHHCS-EEEEESBCSSSBSSHHHHHH----------HHHHHTTCSCCEEEEGGGC-HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhccCC-EEEEEEecCCCCCCccHHHH----------HHHHHHcCCceEEEECCCC-HHHHHHHHHHHCCC
Confidence 356667777777665 6677776 789988875 445544 4555544433 333 3455667888
Q ss_pred CCcEEEE
Q 019378 137 SIPVVLV 143 (342)
Q Consensus 137 ~~P~l~i 143 (342)
++|.|.|
T Consensus 90 tvP~VfI 96 (135)
T 2wci_A 90 TFPQLWV 96 (135)
T ss_dssp SSCEEEE
T ss_pred CcCEEEE
Confidence 9998764
No 367
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=84.20 E-value=2.1 Score=34.01 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=50.4
Q ss_pred EEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc--------CceE
Q 019378 267 VGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA--------NAMI 337 (342)
Q Consensus 267 i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~--------~~~l 337 (342)
|.|+.-.|+ .+.-....++||..|-.-|... .|.+...-+|+.+ .+. | +.++||.+.|+. +++|
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~-egIP~~qQrLi~~--Gk~--L--eD~~TLsdy~I~~~~a~~q~~stL 75 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGI-LKRPPEEQRLYKD--DQL--L--DDGKTLGECGFTSQTARPQAPATV 75 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTSBHHHHTCCTTTSBTTBCEEE
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHH-hCCCHHHeEEEEC--CeE--C--CCCCCHHHcCcccccccCCCCCEE
Confidence 344444565 4777899999999999999885 5777888899843 543 4 668999999998 4667
Q ss_pred EEE
Q 019378 338 SVT 340 (342)
Q Consensus 338 ~v~ 340 (342)
.+.
T Consensus 76 ~L~ 78 (118)
T 2fnj_B 76 GLA 78 (118)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 368
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=83.98 E-value=6.3 Score=31.97 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=42.8
Q ss_pred hccEEEEEeecCChhHHHHHHhCCCCC--CcEEEEEeC-CCCceEEEEe-CCCChHHHHHHHHhhhhc
Q 019378 111 STNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDP-ITGQKMRSWC-GMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 111 ~~~FV~w~~~~~s~eg~~~~~~y~v~~--~P~l~ii~p-~tG~~l~~~~-G~~~~~~~l~~L~~~l~~ 174 (342)
+..++|..+|.+..+...++..|++.. +|.++|++. ..+.. .... |.++++.+..-+..+++-
T Consensus 62 kgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~K-y~~~~~~~t~~~i~~Fv~d~l~G 128 (147)
T 3bj5_A 62 KGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTK-YKPESEELTAERITEFCHRFLEG 128 (147)
T ss_dssp TTTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSSCEE-ECCSCCCCCHHHHHHHHHHHHTT
T ss_pred CCceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEeccccccc-CCCCcccCCHHHHHHHHHHHHcC
Confidence 345677766765456556888999975 999999985 33332 2223 678888877777777763
No 369
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=83.53 E-value=2.3 Score=30.82 Aligned_cols=53 Identities=6% Similarity=0.014 Sum_probs=33.2
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhC-CCCCCcEEEE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY-KLDSIPVVLV 143 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y-~v~~~P~l~i 143 (342)
++.++.++|..|+.... + .+-..-.|... +++......+...+ ++.++|++.+
T Consensus 8 v~~y~~~~C~~C~~~~~-~------L~~~~i~~~~v--dv~~~~~~~l~~~~~~~~~vP~l~~ 61 (89)
T 2klx_A 8 IILYTRPNCPYCKRARD-L------LDKKGVKYTDI--DASTSLRQEMVQRANGRNTFPQIFI 61 (89)
T ss_dssp EEEESCSCCTTTHHHHH-H------HHHHTCCEEEE--CSCHHHHHHHHHHHHSSCCSCEEEE
T ss_pred EEEEECCCChhHHHHHH-H------HHHcCCCcEEE--ECCHHHHHHHHHHhCCCCCcCEEEE
Confidence 56678899999998631 1 11122345444 55522234577888 9999999853
No 370
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=83.44 E-value=2.1 Score=31.16 Aligned_cols=51 Identities=4% Similarity=-0.029 Sum_probs=31.8
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 142 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ 142 (342)
++.++.++|..|+... .++++ .|...-++.+......+...+++.++|.+.
T Consensus 8 v~ly~~~~C~~C~~~~----------~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~ 61 (92)
T 2khp_A 8 VIIYTRPGCPYCARAK----------ALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIF 61 (92)
T ss_dssp EEEEECTTCHHHHHHH----------HHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE
T ss_pred EEEEECCCChhHHHHH----------HHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 5567788999999763 33432 455543332222234577788999999753
No 371
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=83.37 E-value=8 Score=28.92 Aligned_cols=73 Identities=11% Similarity=0.117 Sum_probs=42.3
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh-hHHH----HHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-EGKK----VCTYYKLDSIPVVLVVDPITGQKMRSWC 156 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~-eg~~----~~~~y~v~~~P~l~ii~p~tG~~l~~~~ 156 (342)
++.++.++|..|.... .+.+-+.-.|-...++.... +... +...++..++|.|.| + .|+. +
T Consensus 24 v~ly~~~~Cp~C~~ak-------~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i-~--~~~~---i- 89 (103)
T 3nzn_A 24 VIMYGLSTCVWCKKTK-------KLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII-N--DEKA---I- 89 (103)
T ss_dssp EEEEECSSCHHHHHHH-------HHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE-T--TTEE---E-
T ss_pred EEEEcCCCCchHHHHH-------HHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE-C--CCEE---E-
Confidence 4456788999999973 12222334566665554333 2222 234578999999876 2 2232 3
Q ss_pred CCCChHHHHHHH
Q 019378 157 GMVQPESLLEDL 168 (342)
Q Consensus 157 G~~~~~~~l~~L 168 (342)
|..+++++.+.|
T Consensus 90 gg~~~~~l~~~L 101 (103)
T 3nzn_A 90 VGFKEKEIRESL 101 (103)
T ss_dssp ESCCHHHHHHHT
T ss_pred EcCCHHHHHHHh
Confidence 446777765543
No 372
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=83.31 E-value=7.6 Score=31.71 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=24.5
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
+++.++|.+.|+++| +|+ .+.|..+.+.|...|
T Consensus 141 ~a~~~gv~gtPt~vv----ng~---~~~G~~~~~~l~~~i 173 (175)
T 1z6m_A 141 EANAAHIQFVPTIII----GEY---IFDESVTEEELRGYI 173 (175)
T ss_dssp HHHHHTCCSSCEEEE----TTE---EECTTCCHHHHHHHH
T ss_pred HHHHcCCCCcCeEEE----CCE---EccCCCCHHHHHHHh
Confidence 456789999999654 466 357988888887655
No 373
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=83.09 E-value=3.5 Score=31.46 Aligned_cols=57 Identities=11% Similarity=0.223 Sum_probs=35.0
Q ss_pred HHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhH-HHHHHhCCCCCCcEEE
Q 019378 74 ASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG-KKVCTYYKLDSIPVVL 142 (342)
Q Consensus 74 Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg-~~~~~~y~v~~~P~l~ 142 (342)
..+.++ ++||..+ ++|..|.... .+|++ .|..+-++.+ ++. ..+...++..++|.|.
T Consensus 11 ~i~~~~-vvvy~~g~~~~~~Cp~C~~ak----------~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~if 75 (109)
T 1wik_A 11 LTNKAS-VMLFMKGNKQEAKCGFSKQIL----------EILNSTGVEYETFDILED-EEVRQGLKTFSNWPTYPQLY 75 (109)
T ss_dssp HHTTSS-EEEEESSTTTCCCSSTHHHHH----------HHHHHTCSCEEEEESSSC-HHHHHHHHHHHSCCSSCEEE
T ss_pred HhccCC-EEEEEecCCCCCCCchHHHHH----------HHHHHcCCCeEEEECCCC-HHHHHHHHHHhCCCCCCEEE
Confidence 334444 6677765 8999999863 34433 4555544332 333 3466777889999864
No 374
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=81.85 E-value=6.5 Score=30.44 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=51.7
Q ss_pred CCCeeEEEEECCC----CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc--C
Q 019378 261 RSLLCRVGVRLPD----GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA--N 334 (342)
Q Consensus 261 ~~~~~~i~iRlP~----G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~--~ 334 (342)
+++.++++|.+-| +..+.-.+..++||..|-+-+.... |.++..=+|+.+ ++ + .+.+.||.+.|+. +
T Consensus 19 ~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~-Gipp~~QRli~g--gk---l-l~D~~TL~~ygI~~~G 91 (105)
T 4dbg_A 19 PTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDY-GFPPVLQQWVIG--QR---L-ARDQETLHSHGVRQNG 91 (105)
T ss_dssp -CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TE---E-ECTTCBTGGGTCCSTT
T ss_pred CCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHh-CCCHHHEEEecc--Ce---E-ccCcCcHHHcCCCCCC
Confidence 3445666666544 3578889999999999999998763 777766677754 43 3 3668999999994 5
Q ss_pred ceEEE
Q 019378 335 AMISV 339 (342)
Q Consensus 335 ~~l~v 339 (342)
.+|++
T Consensus 92 ~t~hL 96 (105)
T 4dbg_A 92 DSAYL 96 (105)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66654
No 375
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=78.09 E-value=6 Score=36.78 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=54.3
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec-CCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-IPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
..++|.|+. +|+.+.-....++||.+|-.-|... .|.++..=+|+-. |.++. + +.+.||.++||. +++|++
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~-tgVpp~~QkLi~~k~~Gk~--l--~D~~~L~~~~ik~g~~l~L 76 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRK-TQVRPERQKLLNLKYKGKT--A--ADNVKISALELKPNFKLMM 76 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGCEETTCBSSSSB--C--CTTSBTTSSCCC--CEEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-HCcCHHHeEEeecccCCcc--c--CccccHHHcCCCCCCEEEE
Confidence 467899997 7888999999999999999999875 4777777788732 44442 4 458999999998 455654
No 376
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=77.69 E-value=5.5 Score=33.78 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=37.6
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+.+..+++.++|+++|.. +|+.+..+.|..+++.|...|...+..+
T Consensus 167 ~~a~~~gv~g~Pt~~i~~--~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 212 (216)
T 2in3_A 167 QRVAQWGISGFPALVVES--GTDRYLITTGYRPIEALRQLLDTWLQQH 212 (216)
T ss_dssp HHHHHTTCCSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCcccceEEEEE--CCEEEEeccCCCCHHHHHHHHHHHHHhc
Confidence 456789999999998875 5887667889999999999888877653
No 377
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=77.34 E-value=5.2 Score=31.72 Aligned_cols=68 Identities=9% Similarity=-0.027 Sum_probs=41.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCCh--hH-HHHHHhCC
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTS--EG-KKVCTYYK 134 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s~--eg-~~~~~~y~ 134 (342)
.....+.++......+ + |.+..++|..|... ++.+|++ .|..+.++.+.. +. ..+...++
T Consensus 23 ~~~~~~~v~~~i~~~~-V-vvy~~~~Cp~C~~a---------~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g 91 (129)
T 3ctg_A 23 SQETVAHVKDLIGQKE-V-FVAAKTYCPYCKAT---------LSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISG 91 (129)
T ss_dssp CHHHHHHHHHHHHHSS-E-EEEECTTCHHHHHH---------HHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHcCCC-E-EEEECCCCCchHHH---------HHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhC
Confidence 3445556666666666 3 44567899999976 2334432 455555554431 22 34777889
Q ss_pred CCCCcEEE
Q 019378 135 LDSIPVVL 142 (342)
Q Consensus 135 v~~~P~l~ 142 (342)
..++|.|.
T Consensus 92 ~~tVP~vf 99 (129)
T 3ctg_A 92 QKTVPNVY 99 (129)
T ss_dssp CCSSCEEE
T ss_pred CCCCCEEE
Confidence 99999974
No 378
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=76.89 E-value=6.1 Score=30.18 Aligned_cols=66 Identities=9% Similarity=0.139 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhH-HHHHHhCCCCC
Q 019378 66 SFEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG-KKVCTYYKLDS 137 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg-~~~~~~y~v~~ 137 (342)
...+.++...+.++ ++||..+ ++|..|... +++|++ .|..+-++.+ ++. ..+....+..+
T Consensus 6 ~~~~~v~~~i~~~~-Vvvy~k~t~~~p~Cp~C~~a----------k~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~t 73 (109)
T 3ipz_A 6 QLKDTLEKLVNSEK-VVLFMKGTRDFPMCGFSNTV----------VQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPT 73 (109)
T ss_dssp HHHHHHHHHHTSSS-EEEEESBCSSSBSSHHHHHH----------HHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHccCC-EEEEEecCCCCCCChhHHHH----------HHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCC
Confidence 44556666666665 6677776 489988885 455554 4655544333 333 34556668889
Q ss_pred CcEEEE
Q 019378 138 IPVVLV 143 (342)
Q Consensus 138 ~P~l~i 143 (342)
+|.|.|
T Consensus 74 vP~ifi 79 (109)
T 3ipz_A 74 FPQLYI 79 (109)
T ss_dssp SCEEEE
T ss_pred CCeEEE
Confidence 997754
No 379
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=75.86 E-value=7.4 Score=29.18 Aligned_cols=53 Identities=9% Similarity=0.031 Sum_probs=31.5
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-HHHHHhC-CCCCCcEEE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-KKVCTYY-KLDSIPVVL 142 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-~~~~~~y-~v~~~P~l~ 142 (342)
++.+..++|..|....+ +.+-++-.|...-++.+ ++. ..+...+ +..++|.|.
T Consensus 18 v~vy~~~~Cp~C~~ak~-------~L~~~~i~y~~idI~~~-~~~~~~l~~~~~g~~~vP~if 72 (99)
T 3qmx_A 18 IEIYTWSTCPFCMRALA-------LLKRKGVEFQEYCIDGD-NEAREAMAARANGKRSLPQIF 72 (99)
T ss_dssp EEEEECTTCHHHHHHHH-------HHHHHTCCCEEEECTTC-HHHHHHHHHHTTTCCCSCEEE
T ss_pred EEEEEcCCChhHHHHHH-------HHHHCCCCCEEEEcCCC-HHHHHHHHHHhCCCCCCCEEE
Confidence 44566779999999731 11222235655544333 333 3456666 899999884
No 380
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=75.63 E-value=9.2 Score=29.92 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---c---EEEEEeecCChhHH-HHHHhCCCC
Q 019378 68 EKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---N---FIFWQVYDDTSEGK-KVCTYYKLD 136 (342)
Q Consensus 68 ~eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~---FV~w~~~~~s~eg~-~~~~~y~v~ 136 (342)
.+.++...+.++ ++||..+ ++|..|... +++|++ . |..+-++. .++.. .+....+..
T Consensus 6 ~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~a----------k~lL~~~gv~~~~~~~~dv~~-~~~~~~~l~~~sg~~ 73 (121)
T 3gx8_A 6 RKAIEDAIESAP-VVLFMKGTPEFPKCGFSRAT----------IGLLGNQGVDPAKFAAYNVLE-DPELREGIKEFSEWP 73 (121)
T ss_dssp HHHHHHHHHSCS-EEEEESBCSSSBCTTHHHHH----------HHHHHHHTBCGGGEEEEECTT-CHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccCC-EEEEEeccCCCCCCccHHHH----------HHHHHHcCCCcceEEEEEecC-CHHHHHHHHHHhCCC
Confidence 445556666655 6677776 489988886 445543 2 55554332 23333 345566888
Q ss_pred CCcEEEE
Q 019378 137 SIPVVLV 143 (342)
Q Consensus 137 ~~P~l~i 143 (342)
++|.|.|
T Consensus 74 tvP~vfI 80 (121)
T 3gx8_A 74 TIPQLYV 80 (121)
T ss_dssp SSCEEEE
T ss_pred CCCeEEE
Confidence 9999965
No 381
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=75.52 E-value=9.2 Score=32.28 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=32.2
Q ss_pred cCCeEEE-EEecCCCcchhh--hhhcccCCHHHHHHHhccE-EEEEeecCChhHH-HHHHhCCC
Q 019378 77 QDKWLLV-NLQSTKEFSSHM--LNRDTWANEAVSQTISTNF-IFWQVYDDTSEGK-KVCTYYKL 135 (342)
Q Consensus 77 ~~K~LlV-~l~~~~~~~~~~--f~rdvl~~~~V~~~i~~~F-V~w~~~~~s~eg~-~~~~~y~v 135 (342)
.+||++| ++-..+|+.|.. ++. -++...+|-..++ .++++..+++... +++..+++
T Consensus 46 ~Gk~vVL~fyP~~~tp~Ct~~El~~---f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l 106 (176)
T 4f82_A 46 AGKRVVIFGLPGAFTPTCSAQHVPG---YVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHT 106 (176)
T ss_dssp TTCEEEEEEESCTTCHHHHHTHHHH---HHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTC
T ss_pred CCCeEEEEEEcCCCCCCCCHHHHHH---HHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 3676655 555788999976 321 1122333444567 7888888876553 24444443
No 382
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=73.80 E-value=9.3 Score=30.22 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=48.7
Q ss_pred EECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC--------ceEEE
Q 019378 269 VRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN--------AMISV 339 (342)
Q Consensus 269 iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~--------~~l~v 339 (342)
||+..|+ .+.-....++||..|-.-|... .|.++..-+|+.+ .+. | +.++||+|+|+.+ ++|.+
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~-~giPp~qQrLI~~--Gk~--L--eD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGI-LKRPPDEQRLYKD--DQL--L--DDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHH-HCCCHHHeEEEeC--CeE--C--CCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 3444455 6777888999999999999875 4777777888853 432 4 6699999999864 56766
Q ss_pred Ee
Q 019378 340 TW 341 (342)
Q Consensus 340 ~w 341 (342)
+|
T Consensus 78 vl 79 (118)
T 4ajy_B 78 AF 79 (118)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 383
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=72.83 E-value=12 Score=34.35 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=49.9
Q ss_pred EEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHH----HhCCCC-CCcEEEEEeCCCCceEEE
Q 019378 82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVC----TYYKLD-SIPVVLVVDPITGQKMRS 154 (342)
Q Consensus 82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~----~~y~v~-~~P~l~ii~p~tG~~l~~ 154 (342)
+|.+.++++..|..+. +.|. .|..-.+. .+.|.-+|.+. -..++ +.|++. .+|.++|+++.+|.....
T Consensus 249 ~l~f~~~~~~~~~~~~-~~~~--~vA~~~~~~~~~~f~~id~~~--~~~~~~~~~~~~gi~~~~P~~~i~~~~~~~~~~~ 323 (350)
T 1sji_A 249 IVAFAERSDPDGYEFL-EILK--QVARDNTDNPDLSIVWIDPDD--FPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWM 323 (350)
T ss_dssp EEEECCTTSHHHHHHH-HHHH--HHHHHGGGCSSCCEEEECGGG--CHHHHHHHHHHCCSCTTSCEEEEEESSSSCEEES
T ss_pred EEEEEcCCCccHHHHH-HHHH--HHHHHhCCCCceEEEEECchh--hHHHHHHHHhhcCCCccCCcEEEEeccccccccc
Confidence 3446666666566553 2222 23333433 44444445432 22355 678887 589999999866643321
Q ss_pred -Ee---CCCChHHHHHHHHhhhh
Q 019378 155 -WC---GMVQPESLLEDLVPFMD 173 (342)
Q Consensus 155 -~~---G~~~~~~~l~~L~~~l~ 173 (342)
+. |..+++.+..-|..+++
T Consensus 324 ~~~~~~~~~~~~~i~~F~~d~~~ 346 (350)
T 1sji_A 324 EIPDDDDLPTAEELEDWIEDVLS 346 (350)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHT
T ss_pred CCCcccccCCHHHHHHHHHHHhc
Confidence 32 46788888777776665
No 384
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=72.74 E-value=7.5 Score=30.42 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc----cEEEEEeecCChhHHH-HHHhCCC
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDTSEGKK-VCTYYKL 135 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~----~FV~w~~~~~s~eg~~-~~~~y~v 135 (342)
|...+.++...++++ ++||..+ ++|..|... +++|++ .|..+-++. +++... +....+.
T Consensus 7 ~~~~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~a----------k~lL~~~gv~~~~~vdV~~-d~~~~~~l~~~tg~ 74 (118)
T 2wem_A 7 GGSAEQLDALVKKDK-VVVFLKGTPEQPQCGFSNAV----------VQILRLHGVRDYAAYNVLD-DPELRQGIKDYSNW 74 (118)
T ss_dssp --CHHHHHHHHHHSS-EEEEESBCSSSBSSHHHHHH----------HHHHHHTTCCCCEEEESSS-CHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHhccCC-EEEEEecCCCCCccHHHHHH----------HHHHHHcCCCCCEEEEcCC-CHHHHHHHHHHhCC
Confidence 344556666666665 6667776 488888875 455554 255554432 334433 4455578
Q ss_pred CCCcEEEE
Q 019378 136 DSIPVVLV 143 (342)
Q Consensus 136 ~~~P~l~i 143 (342)
.++|.|.|
T Consensus 75 ~tvP~vfI 82 (118)
T 2wem_A 75 PTIPQVYL 82 (118)
T ss_dssp CSSCEEEE
T ss_pred CCcCeEEE
Confidence 89999864
No 385
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=70.12 E-value=8.9 Score=32.50 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=36.8
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+.+..+++.++|+++|-+ +|+.+....|..+++.|++.|...+..
T Consensus 160 ~~a~~~gv~g~Pt~~v~~--~~~~~~~~~g~~~~e~~~~~i~~~~~~ 204 (208)
T 3kzq_A 160 SLAKSLGVNSYPSLVLQI--NDAYFPIEVDYLSTEPTLKLIRERIIE 204 (208)
T ss_dssp HHHHHTTCCSSSEEEEEE--TTEEEEECCCSSCSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccEEEEEE--CCEEEEeeCCCCCHHHHHHHHHHHHhc
Confidence 345689999999999865 477777778999999999998888764
No 386
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=70.00 E-value=18 Score=27.60 Aligned_cols=70 Identities=6% Similarity=0.066 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCC-h-hH-HHHHHhCCCCCCcE
Q 019378 67 FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDT-S-EG-KKVCTYYKLDSIPV 140 (342)
Q Consensus 67 ~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s-~-eg-~~~~~~y~v~~~P~ 140 (342)
..+.++...+.++.++ +..++|+.|+.. +.+|++ .|-.+-++... . +. ..+...++..++|.
T Consensus 6 ~~~~~~~~i~~~~v~v--y~~~~Cp~C~~a----------k~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~ 73 (114)
T 3h8q_A 6 LRRHLVGLIERSRVVI--FSKSYCPHSTRV----------KELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPN 73 (114)
T ss_dssp HHHHHHHHHHHCSEEE--EECTTCHHHHHH----------HHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCE
T ss_pred HHHHHHHHhccCCEEE--EEcCCCCcHHHH----------HHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCE
Confidence 3455566666666433 667899999886 344443 45555444321 1 21 22556778899999
Q ss_pred EEEEeCCCCceE
Q 019378 141 VLVVDPITGQKM 152 (342)
Q Consensus 141 l~ii~p~tG~~l 152 (342)
+.| +|+.+
T Consensus 74 vfi----~g~~i 81 (114)
T 3h8q_A 74 IFV----NKVHV 81 (114)
T ss_dssp EEE----TTEEE
T ss_pred EEE----CCEEE
Confidence 976 46643
No 387
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=67.57 E-value=23 Score=32.93 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=54.9
Q ss_pred CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChh-HHHH-HHhCCCC-CCcEEEEEeCCCCce-
Q 019378 78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSE-GKKV-CTYYKLD-SIPVVLVVDPITGQK- 151 (342)
Q Consensus 78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~e-g~~~-~~~y~v~-~~P~l~ii~p~tG~~- 151 (342)
.++++|.|.+.++..+..+... + ..|.+-.+. .+.|.-++.+... ...+ ...|++. .+|.++|+++.++..
T Consensus 247 ~~~~~~~f~~~~~~~~~~~~~~-l--~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~ 323 (367)
T 3us3_A 247 DGIHIVAFAEEADPDGYEFLEI-L--KSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSV 323 (367)
T ss_dssp TTEEEEEECCTTSHHHHHHHHH-H--HHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCEE
T ss_pred CCcEEEEEEcCCChhHHHHHHH-H--HHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEecccccce
Confidence 3466666777666556555321 1 233333344 3555545554321 2222 4567775 899999999876532
Q ss_pred EEEEeC---CCChHHHHHHHHhhhhc
Q 019378 152 MRSWCG---MVQPESLLEDLVPFMDG 174 (342)
Q Consensus 152 l~~~~G---~~~~~~~l~~L~~~l~~ 174 (342)
-..+.+ .++++.+...|..+++-
T Consensus 324 ~y~~~~~~~~~t~~~i~~F~~~~~~G 349 (367)
T 3us3_A 324 WMEMDDEEDLPSAEELEDWLEDVLEG 349 (367)
T ss_dssp ECCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred eecCCcccccCCHHHHHHHHHHHHcC
Confidence 222443 68899988888888773
No 388
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=65.39 E-value=14 Score=29.18 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCC--hhHHH-HHHhCCCCCCc
Q 019378 69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDT--SEGKK-VCTYYKLDSIP 139 (342)
Q Consensus 69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s--~eg~~-~~~~y~v~~~P 139 (342)
+.++...+..+ ++|| ..++|..|... +++|++ .|..+-++.+. .+... +....+..++|
T Consensus 5 ~~~~~ii~~~~-Vvvy-sk~~Cp~C~~a----------k~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP 72 (127)
T 3l4n_A 5 KEYSLILDLSP-IIIF-SKSTCSYSKGM----------KELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVP 72 (127)
T ss_dssp HHHHHHHTSCS-EEEE-ECTTCHHHHHH----------HHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHccCC-EEEE-EcCCCccHHHH----------HHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcc
Confidence 33445555555 4444 45789999886 455554 35555555432 22233 34556888999
Q ss_pred EEEE
Q 019378 140 VVLV 143 (342)
Q Consensus 140 ~l~i 143 (342)
.|.|
T Consensus 73 ~IfI 76 (127)
T 3l4n_A 73 NLLV 76 (127)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9965
No 389
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=60.89 E-value=10 Score=30.85 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=30.8
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.+.++.++|.++|+++| +|+.+-...|..+.++|++.|...++
T Consensus 140 ~~~a~~~gv~gTPtfiI----NGky~v~~~~~~s~e~~~~~i~~Ll~ 182 (184)
T 4dvc_A 140 DKQFQDSGLTGVPAVVV----NNRYLVQGQSAKSLDEYFDLVNYLLT 182 (184)
T ss_dssp HHHHHHHTCCSSSEEEE----TTTEEECGGGCSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcCCEEEE----CCEEeeCCcCCCCHHHHHHHHHHHHh
Confidence 34677899999999886 57754334456788888887765554
No 390
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=60.60 E-value=10 Score=31.71 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
..+..++|.++|+++| +|+.+-...|..+.+.|...|...++
T Consensus 143 ~~a~~~gv~GtPtfvv----ng~~~v~~~Ga~~~e~~~~~i~~ll~ 184 (185)
T 3feu_A 143 MLSEKSGISSVPTFVV----NGKYNVLIGGHDDPKQIADTIRYLLE 184 (185)
T ss_dssp HHHHHHTCCSSSEEEE----TTTEEECGGGCSSHHHHHHHHHHHHT
T ss_pred HHHHHcCCCccCEEEE----CCEEEEecCCCCCHHHHHHHHHHHHh
Confidence 4567899999999986 57755344798999999888876654
No 391
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=60.55 E-value=38 Score=31.54 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=49.7
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCC---CccccCCCcCCChhhcCCc
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPG---ATKSLDYDSKLTFEDSGLA 333 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr---~~~~l~~~~~~Tl~e~gL~ 333 (342)
....+.|.||||+...-.+..+.++++|++-|...+.-....-|-|...-+. .....-.+.++++.+-+..
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~ 157 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVE 157 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCC
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCC
Confidence 4578999999999999999999999999999988764334567888764431 1111123567788776654
No 392
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=60.34 E-value=35 Score=31.74 Aligned_cols=103 Identities=12% Similarity=0.131 Sum_probs=55.4
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCCc-chhhhhhcccCCHHHHHHH---hccEEEEEeecCChhHHHHHHhCCCC--
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKEF-SSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLD-- 136 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~-~~~~f~rdvl~~~~V~~~i---~~~FV~w~~~~~s~eg~~~~~~y~v~-- 136 (342)
-.-+.+.+.... ..+++++|.+...++. .++.|. ..+.+.. +..+.|..+|.+. -..++..+++.
T Consensus 222 ~elt~~~~~~~~-~~~~~~~v~f~~~~~~~~~~~~~------~~~~~~~~~~~~~i~f~~id~~~--~~~~~~~~gl~~~ 292 (382)
T 2r2j_A 222 REITFENGEELT-EEGLPFLILFHMKEDTESLEIFQ------NEVARQLISEKGTINFLHADCDK--FRHPLLHIQKTPA 292 (382)
T ss_dssp EECCHHHHHHHH-TTCCCEEEEEECTTCCHHHHHHH------HHHHHHTGGGTTTSEEEEEETTT--THHHHHHTTCCGG
T ss_pred EecChhhHHHHh-cCCCcEEEEEecCCchHHHHHHH------HHHHHHHHHhCCeeEEEEEchHH--hHHHHHHcCCCcc
Confidence 344444444433 4577777777776542 233332 1222222 2355555556543 33567888886
Q ss_pred CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 137 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 137 ~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
.+|.++|+++..+-.+....|..+++.+...|..+++-
T Consensus 293 ~~P~i~i~~~~~~y~~~~~~~~~~~~~i~~F~~d~~~G 330 (382)
T 2r2j_A 293 DCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSG 330 (382)
T ss_dssp GCSEEEEECSSCEEECCCSGGGGSTTHHHHHHHHHHHT
T ss_pred CCCEEEEEcchhcCCCCccccccCHHHHHHHHHHHHCC
Confidence 69999998853221111123444667776666666653
No 393
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=59.60 E-value=14 Score=32.17 Aligned_cols=46 Identities=4% Similarity=0.108 Sum_probs=34.2
Q ss_pred HHHHh-CCCCCCcEEEEEeCCCCceE-----EEEeCCCChHHHHHHHHhhhhc
Q 019378 128 KVCTY-YKLDSIPVVLVVDPITGQKM-----RSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 128 ~~~~~-y~v~~~P~l~ii~p~tG~~l-----~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+.+.. ++|.++|+++|+++ +|+.+ ..+.|..+.+.|...|...+..
T Consensus 161 ~~a~~~~GV~GtPtfvv~~~-nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~l~~ 212 (226)
T 3f4s_A 161 SLAINKLGITAVPIFFIKLN-DDKSYIEHNKVKHGGYKELKYFTNVIDKLYGK 212 (226)
T ss_dssp HHHHHHHCCCSSCEEEEEEC-CTTCCCCGGGGEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCEEEEEcC-CCEEeeCCCCcccccccCHHHHHHHHHHHHhc
Confidence 34567 99999999999874 57644 2455666699999888887764
No 394
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=57.39 E-value=30 Score=26.37 Aligned_cols=66 Identities=11% Similarity=0.191 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHH-HHHhCCCCC
Q 019378 66 SFEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKK-VCTYYKLDS 137 (342)
Q Consensus 66 s~~eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~-~~~~y~v~~ 137 (342)
...+.++...+++ +++||.-+ ++|..|... +++|++ .|...-++.+ ++... +....+..+
T Consensus 4 ~~~~~v~~~i~~~-~Vvlf~kg~~~~~~Cp~C~~a----------k~~L~~~gi~y~~~di~~d-~~~~~~l~~~~g~~t 71 (111)
T 3zyw_A 4 DLNLRLKKLTHAA-PCMLFMKGTPQEPRCGFSKQM----------VEILHKHNIQFSSFDIFSD-EEVRQGLKAYSSWPT 71 (111)
T ss_dssp CHHHHHHHHHTSS-SEEEEESBCSSSBSSHHHHHH----------HHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhcC-CEEEEEecCCCCCcchhHHHH----------HHHHHHcCCCeEEEECcCC-HHHHHHHHHHHCCCC
Confidence 3455666666655 45566652 689888885 345544 4665544433 44433 445557889
Q ss_pred CcEEEE
Q 019378 138 IPVVLV 143 (342)
Q Consensus 138 ~P~l~i 143 (342)
+|.|.|
T Consensus 72 vP~ifi 77 (111)
T 3zyw_A 72 YPQLYV 77 (111)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 999865
No 395
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=57.36 E-value=19 Score=26.16 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=31.4
Q ss_pred EEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCC-hhHH-HHHHhCC--CCCCcEEEE
Q 019378 81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDT-SEGK-KVCTYYK--LDSIPVVLV 143 (342)
Q Consensus 81 LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s-~eg~-~~~~~y~--v~~~P~l~i 143 (342)
+.|| ..++|..|..+. ....++++|++ .|... |++. ++.. .+...++ ..++|.|.|
T Consensus 4 v~ly-~~~~C~~c~~~~----~~~~ak~~L~~~~i~~~~~--di~~~~~~~~~l~~~~g~~~~~vP~ifi 66 (93)
T 1t1v_A 4 LRVY-STSVTGSREIKS----QQSEVTRILDGKRIQYQLV--DISQDNALRDEMRTLAGNPKATPPQIVN 66 (93)
T ss_dssp EEEE-ECSSCSCHHHHH----HHHHHHHHHHHTTCCCEEE--ETTSCHHHHHHHHHHTTCTTCCSCEEEE
T ss_pred EEEE-EcCCCCCchhhH----HHHHHHHHHHHCCCceEEE--ECCCCHHHHHHHHHHhCCCCCCCCEEEE
Confidence 3444 567899995332 11234556654 35444 4543 3443 3566777 679998864
No 396
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=55.60 E-value=25 Score=32.82 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=54.7
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCC---CCcCeEEEe--cCCCCccccCCCcCCChhhcCCcC-ceE
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS---EMKPFRLTH--AIPGATKSLDYDSKLTFEDSGLAN-AMI 337 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~---~~~~f~L~~--~fPr~~~~l~~~~~~Tl~e~gL~~-~~l 337 (342)
...+.|++| +...+-.|..+-+|.++...|...+++. ++..|-|.. .-|++. .-.+.++||+..|+.+ ..|
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~--~Wl~~~~~l~~y~~~~~~~l 79 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKG--IWLEAGKALDYYMLRNGDTM 79 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGC--EECCTTSBGGGGTCCTTCEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcC--EeccCCCCHHHhCCCCCcee
Confidence 467888999 7788999999999999999998887643 578899986 345553 3346688999999974 444
No 397
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=55.17 E-value=21 Score=25.45 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=30.0
Q ss_pred EecC----CCcchhhhhhcccCCHHHHHHHhc---cEEEEEeec----CChhH-HHHHHhCCCC-----CCcEEEE
Q 019378 85 LQST----KEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYD----DTSEG-KKVCTYYKLD-----SIPVVLV 143 (342)
Q Consensus 85 l~~~----~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~----~s~eg-~~~~~~y~v~-----~~P~l~i 143 (342)
+..+ +|..|... +.+|++ .|...-++. ..++. ..+...++.. ++|.|.|
T Consensus 5 Y~~~~~~~~Cp~C~~a----------k~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i 70 (87)
T 1aba_A 5 YGYDSNIHKCGPCDNA----------KRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA 70 (87)
T ss_dssp EECCTTTSCCHHHHHH----------HHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC
T ss_pred EEeCCCCCcCccHHHH----------HHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE
Confidence 3556 89888875 445554 466554441 12333 3466677777 8999875
No 398
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=53.31 E-value=99 Score=26.65 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=37.3
Q ss_pred EEEEEeecCChhHHHHHHhCCC----CCCcEEEEEeCCCCceEEEEeCCCChHH--HHHHHHhhhh
Q 019378 114 FIFWQVYDDTSEGKKVCTYYKL----DSIPVVLVVDPITGQKMRSWCGMVQPES--LLEDLVPFMD 173 (342)
Q Consensus 114 FV~w~~~~~s~eg~~~~~~y~v----~~~P~l~ii~p~tG~~l~~~~G~~~~~~--~l~~L~~~l~ 173 (342)
+.|.-+|.+. -..++..|++ ..+|.|+|++. .|. .....+.++.+. +..-+..+++
T Consensus 169 ~~F~~~d~~~--~~~~~~~fgl~~~~~~~P~v~i~~~-~~~-ky~~~~~~t~~~~~i~~F~~~~~~ 230 (252)
T 2h8l_A 169 LNFAVASRKT--FSHELSDFGLESTAGEIPVVAIRTA-KGE-KFVMQEEFSRDGKALERFLQDYFD 230 (252)
T ss_dssp CEEEEEETTT--THHHHGGGTCCCCSCSSCEEEEECT-TSC-EEECCSCCCTTSHHHHHHHHHHHH
T ss_pred EEEEEEchHH--HHHHHHHcCCCCccCCCCEEEEEeC-cCc-EecCCcccCcchHHHHHHHHHHHC
Confidence 6666556543 2347888888 36999999985 444 344557677776 7666666665
No 399
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=53.08 E-value=16 Score=29.19 Aligned_cols=52 Identities=10% Similarity=0.009 Sum_probs=34.8
Q ss_pred CchHHHHHHHHhhcCCCCCcCeEEEe-cCCCCc--cccCCCcCCChhhcCCcCceEE
Q 019378 285 DPIQLLWSYCYSQLEGSEMKPFRLTH-AIPGAT--KSLDYDSKLTFEDSGLANAMIS 338 (342)
Q Consensus 285 ~~l~~l~~fv~~~~~~~~~~~f~L~~-~fPr~~--~~l~~~~~~Tl~e~gL~~~~l~ 338 (342)
.||..|.+.+..++ ||. ..|.+.. +==|-- +...++.++||.++|+.+++++
T Consensus 20 ~TL~dLV~~l~~~~-gy~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfL 74 (127)
T 3onh_A 20 MKLSDFVVLIREKY-SYP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSII 74 (127)
T ss_dssp CBHHHHHHHHHHHH-TCC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEE
T ss_pred cCHHHHHHHHHHhc-CCC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEE
Confidence 58999999987765 664 3787772 200111 2344557899999999976654
No 400
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=51.92 E-value=49 Score=29.88 Aligned_cols=69 Identities=16% Similarity=-0.028 Sum_probs=49.5
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 333 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 333 (342)
...+.+.|.|+|| .+.-.+..+.++++|++-|...+.-....-|-|.-. .... ..-.+.+++|.+.+..
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~-~~wL~~~~~i~~q~~~ 88 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDT-VAWLKMDKKVLDHDVS 88 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTE-EEECCTTSBGGGSSCC
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCc-CeeCCCccCHHHcCCC
Confidence 4578899999999 688999999999999999888763323456777654 2322 2224678888887654
No 401
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.64 E-value=26 Score=26.61 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=31.5
Q ss_pred EEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCC-hhHHH-HHHhC--------CCCCCcEEEE
Q 019378 81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDT-SEGKK-VCTYY--------KLDSIPVVLV 143 (342)
Q Consensus 81 LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s-~eg~~-~~~~y--------~v~~~P~l~i 143 (342)
|.|| ..++|..|..+.+ -..++.+|++ .|... |++. ++... +...+ +..++|.|.|
T Consensus 10 V~vy-~~~~C~~C~~~~~----~~~ak~~L~~~gi~y~~v--dI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi 78 (111)
T 2ct6_A 10 IRVF-IASSSGFVAIKKK----QQDVVRFLEANKIEFEEV--DITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFN 78 (111)
T ss_dssp EEEE-ECSSCSCHHHHHH----HHHHHHHHHHTTCCEEEE--ETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEE
T ss_pred EEEE-EcCCCCCcccchh----HHHHHHHHHHcCCCEEEE--ECCCCHHHHHHHHHHhcccccccCCCCCCCEEEE
Confidence 4444 5678999994321 1135566655 35444 5543 34444 45554 6678998864
No 402
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=51.55 E-value=36 Score=28.55 Aligned_cols=57 Identities=9% Similarity=0.038 Sum_probs=33.8
Q ss_pred cCCeEEEEEec-CCCcchh-h-hhhcccCCHHHHHH-HhccE-EEEEeecCChhHH-HHHHhCCCC
Q 019378 77 QDKWLLVNLQS-TKEFSSH-M-LNRDTWANEAVSQT-ISTNF-IFWQVYDDTSEGK-KVCTYYKLD 136 (342)
Q Consensus 77 ~~K~LlV~l~~-~~~~~~~-~-f~rdvl~~~~V~~~-i~~~F-V~w~~~~~s~eg~-~~~~~y~v~ 136 (342)
.+||++||++- .+++.|. . ++. + ++...++ -..+. .++++..+++... +++..+++.
T Consensus 42 ~gk~vVL~fyP~~fTp~Ct~~e~~~--f-~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~ 104 (182)
T 1xiy_A 42 NNKKILLISLPGAFTPTCSTKMIPG--Y-EEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK 104 (182)
T ss_dssp TTCEEEEEECSCTTCHHHHHTHHHH--H-HHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHH--H-HHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC
Confidence 47888888775 5788887 2 321 0 2233444 34566 4788888887654 355555543
No 403
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=51.51 E-value=20 Score=29.51 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=29.0
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+++..+++.++|+++| +|+. +.|..+++.|...|...+.
T Consensus 140 ~~a~~~gv~GtPt~vv----nG~~---~~G~~~~~~l~~~i~~~~~ 178 (186)
T 3bci_A 140 KIAKDNHIKTTPTAFI----NGEK---VEDPYDYESYEKLLKDKIK 178 (186)
T ss_dssp HHHHHTTCCSSSEEEE----TTEE---CSCTTCHHHHHHHHHC---
T ss_pred HHHHHcCCCCCCeEEE----CCEE---cCCCCCHHHHHHHHHHHHH
Confidence 4577899999999986 4763 5688899999887777664
No 404
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=51.38 E-value=93 Score=26.83 Aligned_cols=93 Identities=10% Similarity=0.096 Sum_probs=56.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
.+.+++...-.....+++.||.+..+..+..|. .+.+-+++++.|+... + ..++..|++.. |.|++.
T Consensus 12 ~s~~~~~~~l~~~~v~vvgff~~~~~~~~~~f~-------~~A~~lr~~~~F~~~~--~---~~v~~~~~~~~-p~i~~f 78 (252)
T 2h8l_A 12 RTEEEFKKFISDKDASIVGFFDDSFSEAHSEFL-------KAASNLRDNYRFAHTN--V---ESLVNEYDDNG-EGIILF 78 (252)
T ss_dssp CSHHHHHHHHTSSSCEEEEEESCTTSHHHHHHH-------HHHHHTTTTSCEEEEC--C---HHHHHHHCSSS-EEEEEE
T ss_pred cCHHHHHHHhhcCCeEEEEEECCCCChHHHHHH-------HHHHhcccCcEEEEEC--h---HHHHHHhCCCC-CcEEEE
Confidence 345555444444555666666654445555553 4666677777666542 2 34788899986 999988
Q ss_pred eCCC-----CceEEEE-eCCCChHHHHHHHHh
Q 019378 145 DPIT-----GQKMRSW-CGMVQPESLLEDLVP 170 (342)
Q Consensus 145 ~p~t-----G~~l~~~-~G~~~~~~~l~~L~~ 170 (342)
-|.. .+.-... .|..+.+.+...|..
T Consensus 79 k~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~ 110 (252)
T 2h8l_A 79 RPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQE 110 (252)
T ss_dssp CCGGGCCTTSCSEEECCCSSCCHHHHHHHHHH
T ss_pred cchhhcccccccccccCCCCcCHHHHHHHHHh
Confidence 7620 1222345 787788887665554
No 405
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=49.91 E-value=3.4 Score=35.53 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEE
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV 339 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v 339 (342)
.|-||.++|+.+.-....++||..|-.-|... .+.+....+|+.. .+. | +.+.||. .+++|.+
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~k-eGIP~~qQRLIf~--GK~--L--eD~~TLs----~~STLhL 64 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQD-MGFEIDMMTLVNN--GFI--A--PNTELVT----DDVTYYL 64 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHH-hCcChhHEEEEec--CeE--C--CCCCccc----CCCEEEE
Confidence 47789999999988999999999999999875 4667777777743 443 5 3367777 4455544
No 406
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=49.61 E-value=21 Score=30.51 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=33.1
Q ss_pred HHH-HhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 128 KVC-TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 128 ~~~-~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+.+ ..++|.++|+++| +|+ .+.|..+.+.|...|...+..+
T Consensus 158 ~~a~~~~GV~GtPtfvv----ng~---~~~G~~~~e~l~~~i~~~~~~~ 199 (205)
T 3gmf_A 158 DEAINQYNVSGTPSFMI----DGI---LLAGTHDWASLRPQILARLNEG 199 (205)
T ss_dssp HHHHHHHCCCSSSEEEE----TTE---ECTTCCSHHHHHHHHHHHHTC-
T ss_pred HHHHHHcCCccCCEEEE----CCE---EEeCCCCHHHHHHHHHHHhhcc
Confidence 355 7899999999987 566 3689999999999998888765
No 407
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=49.43 E-value=38 Score=33.38 Aligned_cols=78 Identities=9% Similarity=0.134 Sum_probs=46.0
Q ss_pred HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 155 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~ 155 (342)
...++++|.|.+.+.. +..+...++....-|.++...++ ...+++.|+|..||+++++++ +|+. ..+
T Consensus 155 ~~~~~vallF~~~~s~---------~~~~~~ldl~~~~~v~v~~v~~~--~~~l~~kfgV~~~Pslvl~~~-nGk~-~~~ 221 (519)
T 3t58_A 155 NKADYLALVFEREDSY---------LGREVTLDLSQYHAVAVRRVLNT--ESDLVNKFGVTDFPSCYLLLR-NGSV-SRV 221 (519)
T ss_dssp CCCSEEEEEEECTTCC---------HHHHHHHHTTTCTTEEEEEEETT--CHHHHHHHTCCCSSEEEEEET-TSCE-EEC
T ss_pred CCCCeEEEEecCCchH---------HHHHHHHHhhccCCeeEEEecCc--hHHHHHHcCCCCCCeEEEEeC-CCce-eec
Confidence 5667888888876421 11122334444334555543333 246789999999999999996 5653 334
Q ss_pred eCCCChHHHHH
Q 019378 156 CGMVQPESLLE 166 (342)
Q Consensus 156 ~G~~~~~~~l~ 166 (342)
....+...++.
T Consensus 222 ~v~~~~r~~~~ 232 (519)
T 3t58_A 222 PVLVESRSFYT 232 (519)
T ss_dssp CCSSCSHHHHH
T ss_pred ccccccHHHHH
Confidence 43444444443
No 408
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=49.39 E-value=90 Score=24.20 Aligned_cols=99 Identities=9% Similarity=0.053 Sum_probs=59.3
Q ss_pred hhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcch-hhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHh
Q 019378 54 LYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSS-HMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTY 132 (342)
Q Consensus 54 ~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~-~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~ 132 (342)
+-||+-......+.+++...- +..+..+|-+-.++|.+| ..|. ++.+-+ +.+.|...+ + ..++..
T Consensus 16 q~gP~~~~~~i~s~~e~e~fi-~~~~v~VVGfF~~~~~~~~~~F~-------~~A~~~-~d~~F~~t~--~---~~v~~~ 81 (124)
T 2l4c_A 16 GPGAAQEPTWLTDVPAAMEFI-AATEVAVIGFFQDLEIPAVPILH-------SMVQKF-PGVSFGIST--D---SEVLTH 81 (124)
T ss_dssp CSCCSCCCEECCSHHHHHHHH-HTSSEEEEEECSCTTSTHHHHHH-------HHHHHC-TTSEEEEEC--C---HHHHHH
T ss_pred ccCCCCcceEcCCHHHHHHHH-hcCCCEEEEEECCCCChhHHHHH-------HHHHhC-CCceEEEEC--h---HHHHHH
Confidence 336666554456666655444 456667776666666665 2331 334444 566665432 2 347889
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeC----CCChHHHHHHH
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCG----MVQPESLLEDL 168 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G----~~~~~~~l~~L 168 (342)
|++. .|.|.+..+-. +....+.| ..+.+.|...|
T Consensus 82 ~~v~-~~~vvlfkkfd-e~~~~~~g~~~~~~~~~~L~~FI 119 (124)
T 2l4c_A 82 YNIT-GNTICLFRLVD-NEQLNLEDEDIESIDATKLSRFI 119 (124)
T ss_dssp TTCC-SSCEEEEETTT-TEEEEECHHHHTTCCHHHHHHHH
T ss_pred cCCC-CCeEEEEEcCC-CCceeecCcccCCCCHHHHHHHH
Confidence 9987 89999988632 34445665 67888775544
No 409
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=48.93 E-value=30 Score=31.33 Aligned_cols=69 Identities=16% Similarity=-0.028 Sum_probs=46.8
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcC
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSG 331 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~g 331 (342)
.....+.|.||||+.+.-.+..+.++++|++-|...+.-.+..-|-|.-.-+... ..-.+.+++|.+..
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~-~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATS-KTWLDSAKEIKKQV 83 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTE-EEECCTTSBHHHHC
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCc-cchhccchhHHHhc
Confidence 3467899999999999999999999999999998886432344566653211111 11235667776653
No 410
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=48.82 E-value=25 Score=29.78 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=33.0
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
+.+..++|.++|+++| +|+. +.|..+.+.|...|...+...
T Consensus 154 ~~a~~~gV~gtPtfvv----nG~~---~~G~~~~e~l~~~i~~~~~~~ 194 (202)
T 3gha_A 154 DLNQKMNIQATPTIYV----NDKV---IKNFADYDEIKETIEKELKGK 194 (202)
T ss_dssp HHHHHTTCCSSCEEEE----TTEE---CSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCcCCEEEE----CCEE---ecCCCCHHHHHHHHHHHHHhh
Confidence 4567899999999987 5664 678899999998888877653
No 411
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=46.99 E-value=18 Score=30.25 Aligned_cols=40 Identities=8% Similarity=-0.068 Sum_probs=28.7
Q ss_pred cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecC
Q 019378 77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDD 122 (342)
Q Consensus 77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~ 122 (342)
.+++.+|.|.+.+|..|..|.. .+.++.++ ++++..+.+.
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~------~l~~~~~~~~~~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEP------VLSKHAKSFKDDMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHH------HHHHHHTTCCTTEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHH------HHHHHHHHCCCCeEEEEecCC
Confidence 3689999999999999999964 34444443 4666555554
No 412
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=46.18 E-value=4.2 Score=35.63 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 339 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v 339 (342)
...++|.| -.+|+.+..+...++++..|++..... .|.+...+++.-. .+. + +.+.|-+++|+. +.+|-|
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcER-qGLs~~siRFLFD--GqR--I--~dddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHH-hCCCccceEEEEC--CEe--c--CCCCCHHHcCCCCCCEEEE
Confidence 45677888 569999999999999999999865443 3555556665433 443 3 558999999998 455543
No 413
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=45.84 E-value=9.4 Score=32.52 Aligned_cols=45 Identities=4% Similarity=-0.096 Sum_probs=29.7
Q ss_pred CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC
Q 019378 78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD 122 (342)
Q Consensus 78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~ 122 (342)
.++.||.|.+.||..|..|...+=-.+.+.+-+.++.++..++++
T Consensus 113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~ 157 (197)
T 1un2_A 113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 157 (197)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccC
Confidence 578999999999999999963321334444444445555555554
No 414
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=45.68 E-value=14 Score=30.96 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
+.++.++|.+.|+++| +|+.+..+.|..+++++.+.|
T Consensus 145 ~~a~~~GV~gtPtf~i----ng~~~~~~s~~~~~e~w~~~l 181 (182)
T 3gn3_A 145 KYARQNGIHVSPTFMI----NGLVQPGMSSGDPVSKWVSDI 181 (182)
T ss_dssp HHHHHHTCCSSSEEEE----TTEECTTCCTTSCHHHHHHHH
T ss_pred HHHHHCCCCccCEEEE----CCEEccCCCCCCCHHHHHHHh
Confidence 4677899999999987 577776678889999998765
No 415
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.24 E-value=77 Score=31.69 Aligned_cols=69 Identities=12% Similarity=-0.029 Sum_probs=48.6
Q ss_pred CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 333 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 333 (342)
..+.|.|.|||| .+.-.+..+.++++|++-|...+.-....-|-|.-.-+... ....+.+++|.+.++.
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~-~~WLd~~k~i~~q~~~ 71 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGD-LTWIKLYKKVMQQDVK 71 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSC-EEECCTTSBGGGSCBC
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcc-hhHhhccccHHHhccc
Confidence 467899999999 57788899999999999988876322345577754223322 1224678888887654
No 416
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=45.12 E-value=12 Score=32.10 Aligned_cols=72 Identities=7% Similarity=-0.039 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378 65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 144 (342)
Q Consensus 65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii 144 (342)
+++.+.++..++.+|+++|++-.-. .+=.++.-..|| +++=..++-.+...+...++.+++.+.|.+++|
T Consensus 43 ~~L~~iv~~ik~~gK~vivh~DlI~---------GLs~d~~ai~fL-~~~~pdGIIsTk~~~i~~Akk~GL~tIqR~Fli 112 (188)
T 1vkf_A 43 LNLKFHLKILKDRGKTVFVDMDFVN---------GLGEGEEAILFV-KKAGADGIITIKPKNYVVAKKNGIPAVLRFFAL 112 (188)
T ss_dssp TTHHHHHHHHHHTTCEEEEEGGGEE---------TCCSSHHHHHHH-HHHTCSEEEESCHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHHHHHHHCCCeEEEecCccc---------ccCCCHHHHHHH-HhcCCCEEEcCcHHHHHHHHHcCCEEeeEEEEE
Confidence 4699999999999999998765521 122456677778 433333333456777888999999999999999
Q ss_pred eC
Q 019378 145 DP 146 (342)
Q Consensus 145 ~p 146 (342)
|.
T Consensus 113 Ds 114 (188)
T 1vkf_A 113 DS 114 (188)
T ss_dssp SH
T ss_pred Ee
Confidence 94
No 417
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=44.93 E-value=48 Score=25.44 Aligned_cols=104 Identities=9% Similarity=0.086 Sum_probs=58.3
Q ss_pred CcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhccc----------------------CCHHHHHHHhccEEEEE
Q 019378 61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTW----------------------ANEAVSQTISTNFIFWQ 118 (342)
Q Consensus 61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl----------------------~~~~V~~~i~~~FV~w~ 118 (342)
+--..++.+|+..-.+.+-.-++.+..++..---.-.++++ .+..|.+++...++...
T Consensus 20 v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~ 99 (152)
T 4gqw_A 20 VKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVE 99 (152)
T ss_dssp BCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CCBHHHHSEESCCCEE
T ss_pred ECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccccHHHhcCCCceEEC
Confidence 34467899999887766544444443332211111112222 23457778877776665
Q ss_pred eecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378 119 VYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 172 (342)
Q Consensus 119 ~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l 172 (342)
.+.+-.++..+.... .+..+.|++. .|+++ |.++..+++..+....
T Consensus 100 ~~~~l~~a~~~~~~~---~~~~l~Vvd~-~g~~~----Giit~~dil~~~~~~~ 145 (152)
T 4gqw_A 100 EKTNLEDAAKILLET---KYRRLPVVDS-DGKLV----GIITRGNVVRAALQIK 145 (152)
T ss_dssp SSSBHHHHHHHHHHS---SCCEEEEECT-TSBEE----EEEEHHHHHHHHHC--
T ss_pred CCCcHHHHHHHHHHC---CCCEEEEECC-CCcEE----EEEEHHHHHHHHHhcc
Confidence 444445666655555 4567778884 56644 7777888887665543
No 418
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=43.89 E-value=81 Score=28.00 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=47.1
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 333 (342)
Q Consensus 265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 333 (342)
+.|.|.|+|| .+.-.+..+.++++|++-|...+.=.+..-|-|.-.-+... ..-.+.+++|.+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~-~~wLd~~~~l~~q~~~ 68 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGF-STWLKLNKKVTAQDVR 68 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSC-EEECCSSSBGGGSCBC
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCc-eeecccccCHHhhccC
Confidence 5789999999 57788899999999999998876332345677764323322 1223678888887654
No 419
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=40.99 E-value=44 Score=27.76 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=30.2
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
...+..++|.++|+++| +|+.+ +.|. +.+.|+..|...+..
T Consensus 144 ~~~a~~~gv~gtPt~vv----ng~~~--~~~~-~~e~l~~~i~~ll~k 184 (193)
T 3hz8_A 144 QELTETFQIDGVPTVIV----GGKYK--VEFA-DWESGMNTIDLLADK 184 (193)
T ss_dssp HHHHHHTTCCSSSEEEE----TTTEE--ECCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcCCEEEE----CCEEE--ecCC-CHHHHHHHHHHHHHH
Confidence 34567899999999986 46654 2344 889998888777763
No 420
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=40.74 E-value=47 Score=25.18 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=57.3
Q ss_pred CcccccHHHHHHHHHHcCCeEEEEEecCCC----cchhhh-----hhcccCCHHHHHHHhccEEEEEeecCChhHHHHHH
Q 019378 61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKE----FSSHML-----NRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCT 131 (342)
Q Consensus 61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~----~~~~~f-----~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~ 131 (342)
+--..+..+|+..-.+.+.--++.+.+.+. ..-..+ ....+.+..|.+++..+++....+..-.++...
T Consensus 21 v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~-- 98 (138)
T 2p9m_A 21 AKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKK-- 98 (138)
T ss_dssp EETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCSSCCCEETTSBHHHHHHH--
T ss_pred ECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCCCcEEECCCCCHHHHHHH--
Confidence 334568999998876665444444433321 111112 122345667888887777666544433444443
Q ss_pred hCCCCC-----CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 132 YYKLDS-----IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 132 ~y~v~~-----~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
+.-.. +..+.|++. .|+.+ |.++..+++..+..
T Consensus 99 -~~~~~~~~~~~~~l~Vvd~-~g~~~----Giit~~dll~~~~~ 136 (138)
T 2p9m_A 99 -MDISGKKEEIINQLPVVDK-NNKLV----GIISDGDIIRTISK 136 (138)
T ss_dssp -HTCC-----CCCEEEEECT-TSBEE----EEEEHHHHHHHHHH
T ss_pred -HHhcCCccccccEEEEECC-CCeEE----EEEEHHHHHHHHHh
Confidence 33344 678888885 56644 66778888776543
No 421
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=38.74 E-value=79 Score=24.90 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=58.7
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCC----cchhhhhh-------------cccCCHHHHHHHhccEEEEEeecCChh
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKE----FSSHMLNR-------------DTWANEAVSQTISTNFIFWQVYDDTSE 125 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~----~~~~~f~r-------------dvl~~~~V~~~i~~~FV~w~~~~~s~e 125 (342)
-..++.+|+..-.+.+---++.+.+.+. .....+.+ ..+.+..|.+++..+++....+..-.+
T Consensus 20 ~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 99 (160)
T 2o16_A 20 RTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKE 99 (160)
T ss_dssp TTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHSCSCEEEBCTTSBHHH
T ss_pred CCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHHHhcCCCeEECCCCCHHH
Confidence 4568888888776655433333332221 11111111 123455677777777766654444456
Q ss_pred HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 126 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 126 g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+..+....++ ..+.|++. |. +.|.++..+++..+...++
T Consensus 100 a~~~m~~~~~---~~lpVvd~--g~----lvGiit~~dil~~~~~~~~ 138 (160)
T 2o16_A 100 SAIYMQKHKI---GCLPVVAK--DV----LVGIITDSDFVTIAINLLE 138 (160)
T ss_dssp HHHHHHHTTC---SCEEEEET--TE----EEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CEEEEEEC--CE----EEEEEEHHHHHHHHHHHhc
Confidence 6666555554 45667774 54 4588889999888777665
No 422
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=37.59 E-value=12 Score=27.60 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=17.5
Q ss_pred CchhHHHHHHHHHHHhHHHhh
Q 019378 202 KPDIENEELLQALAASMETIK 222 (342)
Q Consensus 202 ~r~eqde~~e~Al~asle~~~ 222 (342)
...++|++|.+||++||....
T Consensus 50 ~~edeD~DLKAAIaASLrd~E 70 (81)
T 1q0v_A 50 IEEEEDPDLKAAIQESLREAE 70 (81)
T ss_dssp CCCCSCHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHH
Confidence 347889999999999998654
No 423
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=37.58 E-value=77 Score=27.02 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHc---CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCC
Q 019378 65 GSFEKAKDAASVQ---DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSI 138 (342)
Q Consensus 65 gs~~eA~~~Ak~~---~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~ 138 (342)
.+.+++++.-+.. ...+.| +..++|..|+.. +.+|++ .|...-++.+ ++...+...++..++
T Consensus 153 ~~~~~il~~l~~~~i~~~~i~l-y~~~~Cp~C~~a----------~~~L~~~~i~~~~~~i~~~-~~~~~l~~~~g~~~v 220 (241)
T 1nm3_A 153 SDADTMLKYLAPQHQVQESISI-FTKPGCPFCAKA----------KQLLHDKGLSFEEIILGHD-ATIVSVRAVSGRTTV 220 (241)
T ss_dssp SSHHHHHHHHCTTSCCCCCEEE-EECSSCHHHHHH----------HHHHHHHTCCCEEEETTTT-CCHHHHHHHTCCSSS
T ss_pred cCHHHHHHHhhhhccccceEEE-EECCCChHHHHH----------HHHHHHcCCceEEEECCCc-hHHHHHHHHhCCCCc
Confidence 4677777665543 333444 456799999976 334443 4555443332 444667888999999
Q ss_pred cEEEE
Q 019378 139 PVVLV 143 (342)
Q Consensus 139 P~l~i 143 (342)
|.|.+
T Consensus 221 P~~~~ 225 (241)
T 1nm3_A 221 PQVFI 225 (241)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99863
No 424
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=37.50 E-value=56 Score=25.98 Aligned_cols=64 Identities=9% Similarity=0.179 Sum_probs=41.0
Q ss_pred CHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 103 NEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 103 ~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+..|.++++.+++....+..-.++. ..+.-..+..+.|++. .|+++ |.++..+++..+......
T Consensus 97 ~~~v~~~m~~~~~~v~~~~~l~~a~---~~m~~~~~~~lpVvd~-~g~~v----Giit~~dil~~~~~~~~~ 160 (180)
T 3sl7_A 97 GKVVGDLMTPSPLVVRDSTNLEDAA---RLLLETKFRRLPVVDA-DGKLI----GILTRGNVVRAALQIKRN 160 (180)
T ss_dssp TCBHHHHSEESCCCEETTSBHHHHH---HHHTTSTTCEEEEECT-TCBEE----EEEEHHHHHHHHHHHHHT
T ss_pred cccHHHHhCCCceEeCCCCcHHHHH---HHHHHcCCCEEEEECC-CCeEE----EEEEHHHHHHHHHHHhhh
Confidence 4457778877766654333333443 3444456778888884 56654 777889998887776654
No 425
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=35.82 E-value=74 Score=27.58 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=32.9
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~ 175 (342)
.+..+++.++|+++| +|+ ..+.|..+++.|...|...+...
T Consensus 175 ~a~~~Gv~GvPtfvv----~g~--~~v~Ga~~~e~~~~~i~~~~~~~ 215 (239)
T 3gl5_A 175 EAAQLGATGVPFFVL----DRA--YGVSGAQPAEVFTQALTQAWGER 215 (239)
T ss_dssp HHHHTTCCSSSEEEE----TTT--EEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCeeCeEEE----CCc--EeecCCCCHHHHHHHHHHHHhhc
Confidence 456889999999986 354 24689999999999999888753
No 426
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=35.44 E-value=23 Score=30.34 Aligned_cols=99 Identities=10% Similarity=0.119 Sum_probs=67.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
-+++.+.+...++.+|.++|++-. + ..+=.++.-..||.+.+=.-++-.+.......++.+++...|.+++
T Consensus 40 i~~l~~~v~~lk~~~K~v~Vh~Dl-----i----~Gls~d~~ai~fL~~~~~pdGIIsTk~~~i~~Ak~~gL~tIqR~Fl 110 (192)
T 3kts_A 40 VAQLKALVKYAQAGGKKVLLHADL-----V----NGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFM 110 (192)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEGGG-----E----ETCCCSHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEecCc-----h----hccCCcHHHHHHHHhCCCCCEEEeCcHHHHHHHHHCCCeEEEEEEE
Confidence 467999999999999987773322 1 1223566677888764333343445667778899999999999999
Q ss_pred EeCCC---C---------ceEEEEeCCCChHHHHHHHHhhhh
Q 019378 144 VDPIT---G---------QKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 144 i~p~t---G---------~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
||... + ..+..+.|.+ | .++..+.+.++
T Consensus 111 iDS~al~~~~~~i~~~~PD~iEiLPGi~-p-~iI~~i~~~~~ 150 (192)
T 3kts_A 111 IDSSAYNKGVALIQKVQPDCIELLPGII-P-EQVQKMTQKLH 150 (192)
T ss_dssp CSHHHHHHHHHHHHHHCCSEEEEECTTC-H-HHHHHHHHHHC
T ss_pred EEcchHHHHHHHHhhcCCCEEEECCchh-H-HHHHHHHHhcC
Confidence 99421 1 1356677754 4 57777777654
No 427
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=35.32 E-value=30 Score=19.54 Aligned_cols=17 Identities=47% Similarity=0.429 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHHHhh
Q 019378 206 ENEELLQALAASMETIK 222 (342)
Q Consensus 206 qde~~e~Al~asle~~~ 222 (342)
++++++.|++-|+.+..
T Consensus 3 EeEEl~LAlAlS~sEae 19 (26)
T 2d3g_P 3 EEEELQLALALSQSEAE 19 (26)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45568888888876543
No 428
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=35.31 E-value=1.8e+02 Score=24.75 Aligned_cols=74 Identities=23% Similarity=0.274 Sum_probs=48.9
Q ss_pred CCCCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHH-HHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378 255 EEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSY-CYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 333 (342)
Q Consensus 255 ~EP~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~f-v~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 333 (342)
++|.. .+.++|.++- +|+.+.-+...++++..|++- |... |.+...++|... .+. + +.+.|-+++++.
T Consensus 14 ~~~~~--~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~--g~~~~~~~f~fd--G~~--i--~~~~Tpk~L~~e 82 (209)
T 3uf8_A 14 PEVKP--ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQ--GKEMDSLRFLYD--GIR--I--QADQTPEDLDME 82 (209)
T ss_dssp ----C--CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHH--TCCGGGCEEEET--TEE--C--CTTCCTTTTTCC
T ss_pred ceeCC--CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhh--CCChheEEEEEC--CEe--c--cCCCChHHhhhc
Confidence 45543 4688899987 888889999999999999875 4444 667777777653 221 2 457777777776
Q ss_pred -CceEEE
Q 019378 334 -NAMISV 339 (342)
Q Consensus 334 -~~~l~v 339 (342)
+..|-+
T Consensus 83 d~d~I~~ 89 (209)
T 3uf8_A 83 DNDIIEA 89 (209)
T ss_dssp TTEEEEE
T ss_pred ccccchh
Confidence 444433
No 429
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=34.89 E-value=31 Score=26.31 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=57.9
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecCCC----cchhhhh-----hcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhC
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQSTKE----FSSHMLN-----RDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY 133 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~----~~~~~f~-----rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y 133 (342)
-..++.+|+..-.+.+---++.+.+.+. .....+. ...+.+..|.+++..+++....+..-.++..+....
T Consensus 22 ~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~ 101 (138)
T 2yzi_A 22 PSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEH 101 (138)
T ss_dssp TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhCCCeEECCCCcHHHHHHHHHhc
Confidence 3568889888776655433333332221 1112221 112344556777777776665444445555555444
Q ss_pred CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 134 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 134 ~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.++++ |++. .|+ +.|.++..+++..+...++
T Consensus 102 ---~~~~l-Vvd~-~g~----~~Giit~~dil~~~~~~~~ 132 (138)
T 2yzi_A 102 ---RIKHI-LIEE-EGK----IVGIFTLSDLLEASRRRLE 132 (138)
T ss_dssp ---TCSEE-EEEE-TTE----EEEEEEHHHHHHHHHCCSC
T ss_pred ---CCCEE-EECC-CCC----EEEEEEHHHHHHHHHHHHH
Confidence 56788 8884 465 4477778888876655443
No 430
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=33.66 E-value=18 Score=29.74 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=28.5
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
.+..+++.++|+++| +|+.+-...|..+++.|...|...+.
T Consensus 154 ~a~~~gv~gtPt~~i----ng~~~~~~~g~~~~~~l~~~i~~~l~ 194 (195)
T 3c7m_A 154 SYDVAKIQGVPAYVV----NGKYLIYTKSIKSIDAMADLIRELAS 194 (195)
T ss_dssp HHHHHHHHCSSEEEE----TTTEEECGGGCCCHHHHHHHHHHHHT
T ss_pred HHHHcCCCccCEEEE----CCEEEeccCCCCCHHHHHHHHHHHHh
Confidence 456778999999755 46643223377889999888877654
No 431
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=32.48 E-value=32 Score=26.72 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=58.2
Q ss_pred CcccccHHHHHHHHHHcCCeEEEEEecCCCc----chhhhhhc----------ccCCHHHHHHHhccEEEEEeecCChhH
Q 019378 61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEF----SSHMLNRD----------TWANEAVSQTISTNFIFWQVYDDTSEG 126 (342)
Q Consensus 61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~----~~~~f~rd----------vl~~~~V~~~i~~~FV~w~~~~~s~eg 126 (342)
+--..++.+|+..-.+.+---++.+...+.. .-..+.+. .+.+..|.+++..+++....+..-.++
T Consensus 30 v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 109 (150)
T 3lqn_A 30 VQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKA 109 (150)
T ss_dssp BCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGGTCBSSCCEEETTCBHHHH
T ss_pred ECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHHHhcCCCceeCCCCCHHHH
Confidence 3446789999988766554333333322211 11111111 123445666666677666655555666
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
..+....++ +.|++. .|+.+ |.++..+++..+...+.
T Consensus 110 ~~~~~~~~~-----l~Vvd~-~g~~~----Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 110 LEMTIDHPF-----ICAVNE-DGYFE----GILTRRAILKLLNKKVR 146 (150)
T ss_dssp HHHHHHCSE-----EEEECT-TCBEE----EEEEHHHHHHHHHHHC-
T ss_pred HHHHHhCCE-----EEEECC-CCcEE----EEEEHHHHHHHHHHHhH
Confidence 666655543 777774 56644 77788898887776654
No 432
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=32.26 E-value=24 Score=25.89 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=18.0
Q ss_pred CchhHHHHHHHHHHHhHHHhhc
Q 019378 202 KPDIENEELLQALAASMETIKD 223 (342)
Q Consensus 202 ~r~eqde~~e~Al~asle~~~~ 223 (342)
.+..+|++|.+||+.||++.+.
T Consensus 7 ~~~~eDeDLkrAieLSL~Es~~ 28 (81)
T 1q0v_A 7 TPEDEEELIRKAIELSLKESRN 28 (81)
T ss_dssp CCSSHHHHHHHHHHHHHHCCCC
T ss_pred cccCchHHHHHHHHHhHHHHcC
Confidence 3467899999999999997543
No 433
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=31.62 E-value=87 Score=31.85 Aligned_cols=48 Identities=15% Similarity=-0.009 Sum_probs=39.6
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA 311 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~ 311 (342)
.+.+.|.||||+...-.+..+.++++|++-|..++.-....-|-|...
T Consensus 263 ~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~ 310 (655)
T 3pvl_A 263 PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIA 310 (655)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEE
T ss_pred ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEe
Confidence 467899999999999999999999999999988864333557888653
No 434
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=30.55 E-value=51 Score=27.77 Aligned_cols=102 Identities=9% Similarity=0.046 Sum_probs=61.4
Q ss_pred cccHHHHHHHHHHcC--CeEEEEEecCC-Ccchhhhhhccc---CCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCC
Q 019378 64 NGSFEKAKDAASVQD--KWLLVNLQSTK-EFSSHMLNRDTW---ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDS 137 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~--K~LlV~l~~~~-~~~~~~f~rdvl---~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~ 137 (342)
..+..+|+..-++.. ..-.+++.++. ..---.-.++++ .+..|.++++.++++...+.+-.++.++...|+
T Consensus 70 ~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~--- 146 (205)
T 3kxr_A 70 KATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHEPHEPLISLLSEDSRALTANTTLLDAAEAIEHSR--- 146 (205)
T ss_dssp TCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSCTTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSS---
T ss_pred CCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCCCcchHHHHhcCCCeEECCCCCHHHHHHHHHhcC---
Confidence 578999999887730 33334444432 211111123333 234577788778877776665566666666664
Q ss_pred CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+..+.|+|. .|.++ |.++.++++..+..-..
T Consensus 147 ~~~lpVVD~-~g~lv----GiIT~~Dil~~i~~e~~ 177 (205)
T 3kxr_A 147 EIELPVIDD-AGELI----GRVTLRAATALVREHYE 177 (205)
T ss_dssp CSEEEEECT-TSBEE----EEEEHHHHHHHHHHHHC
T ss_pred CCEEEEEcC-CCeEE----EEEEHHHHHHHHHHHHH
Confidence 566677884 56654 77778888887765443
No 435
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=29.65 E-value=24 Score=31.94 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=21.0
Q ss_pred HcCCeEEEEEecCCCcchhhhhhc
Q 019378 76 VQDKWLLVNLQSTKEFSSHMLNRD 99 (342)
Q Consensus 76 ~~~K~LlV~l~~~~~~~~~~f~rd 99 (342)
..+|..++.|.+++|+.|+.+..+
T Consensus 145 ~~gk~~I~vFtDp~CPYCkkl~~~ 168 (273)
T 3tdg_A 145 ANKDKILYIVSDPMCPHCQKELTK 168 (273)
T ss_dssp GGTTCEEEEEECTTCHHHHHHHHT
T ss_pred CCCCeEEEEEECcCChhHHHHHHH
Confidence 568899999999999999999644
No 436
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=29.34 E-value=1.1e+02 Score=24.02 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=34.8
Q ss_pred EEEEEecCCCcchhhhhhcccCCHHHHHHHhcc-EEEEEeecC-ChhHHH-HHHhC--------CCCCCcEEEE
Q 019378 81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDD-TSEGKK-VCTYY--------KLDSIPVVLV 143 (342)
Q Consensus 81 LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~-FV~w~~~~~-s~eg~~-~~~~y--------~v~~~P~l~i 143 (342)
+.||. ++.|..|..+.+ -..++.+|+.+ .-+=.+|++ +++.+. +.+.. +..++|.|.|
T Consensus 2 V~vYt-t~~c~~c~~kk~----c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi 70 (121)
T 1u6t_A 2 IRVYI-ASSSGSTAIKKK----QQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFN 70 (121)
T ss_dssp EEEEE-CTTCSCHHHHHH----HHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEE
T ss_pred EEEEe-cCCCCCccchHH----HHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEE
Confidence 44565 557999975532 23578888753 333344664 344443 56677 6678887764
No 437
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=29.25 E-value=12 Score=35.48 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS 338 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~ 338 (342)
...++|.|+- +|+.+..+...+++++.|++-.... .|.+...++++-. ++. + ..+.|.+++|+. +.+|-
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r-~G~~~~~~rFlFd--G~r--I--~~~~TP~~L~MEDgD~Id 88 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIE 88 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHH-hCCCcceEEEEEC--CeE--C--CCCCChHHcCCCccchhh
Confidence 4578888886 7888999999999999999864443 3555556665543 432 3 568999999998 45543
No 438
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=28.63 E-value=74 Score=24.74 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc----cEEEEEeecCChhHHH-HHHhCCCCCCc
Q 019378 69 KAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDTSEGKK-VCTYYKLDSIP 139 (342)
Q Consensus 69 eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~----~FV~w~~~~~s~eg~~-~~~~y~v~~~P 139 (342)
+-++..-++++ ++||.-+ +.|..|... +++|+. .|..+.++. .++-+. +....+-.++|
T Consensus 11 e~i~~~i~~~~-VvvF~Kgt~~~P~C~fc~~a----------k~lL~~~gv~~~~~~~v~~-~~~~r~~l~~~sg~~TvP 78 (118)
T 2wul_A 11 EQLDALVKKDK-VVVFLKGTPEQPQCGFSNAV----------VQILRLHGVRDYAAYNVLD-DPELRQGIKDYSNWPTIP 78 (118)
T ss_dssp HHHHHHHHHSS-EEEEESBCSSSBSSHHHHHH----------HHHHHHTTCCSCEEEETTS-CHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHhcCC-EEEEEcCCCCCCCCHHHHHH----------HHHHHHhCCcCeEeecccC-CHHHHHHHHHhccCCCCC
Confidence 34444455544 5666665 346666554 455543 355554332 334333 44555778999
Q ss_pred EEEEEeCCCCceE
Q 019378 140 VVLVVDPITGQKM 152 (342)
Q Consensus 140 ~l~ii~p~tG~~l 152 (342)
.|+| +|+.+
T Consensus 79 qIFI----~g~~I 87 (118)
T 2wul_A 79 QVYL----NGEFV 87 (118)
T ss_dssp EEEE----TTEEE
T ss_pred eEeE----CCEEE
Confidence 9976 46644
No 439
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=28.53 E-value=69 Score=25.09 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=57.2
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCC----cchhhhhhcc----------cCCHHHHHHHhccEEEEEeecCChhHH
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKE----FSSHMLNRDT----------WANEAVSQTISTNFIFWQVYDDTSEGK 127 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~----~~~~~f~rdv----------l~~~~V~~~i~~~FV~w~~~~~s~eg~ 127 (342)
--..++.+|+..-.+.+-.-++.+.+.+. ..-..+.+.+ +.+..|.+++..+++....+..-.++.
T Consensus 30 ~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 109 (159)
T 1yav_A 30 QVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGF 109 (159)
T ss_dssp ETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBCSCCEEETTSBHHHHH
T ss_pred CCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHhcCCCCceEcCCCCHHHHH
Confidence 34568999998877665444444433321 1111111111 345668888887777665444334444
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
...... .+ +.|++. .|+++ |.++..+++..+...+.
T Consensus 110 ~~m~~~---~~--lpVvd~-~g~~v----Giit~~dil~~~~~~~~ 145 (159)
T 1yav_A 110 GMVINN---GF--VCVEND-EQVFE----GIFTRRVVLKELNKHIR 145 (159)
T ss_dssp HHTTTC---SE--EEEECT-TCBEE----EEEEHHHHHHHHHHHC-
T ss_pred HHHHhC---CE--EEEEeC-CCeEE----EEEEHHHHHHHHHHHHH
Confidence 433333 33 777874 56654 77778888887766554
No 440
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=27.40 E-value=13 Score=35.18 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceE
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 337 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l 337 (342)
.++.++|.|+- +|+.+.-+...++++..|+...... .|.+...+++.. -.+. + ..+.|-+++|+.. .+|
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~-~g~~~~~~~f~f--~G~~--i--~~~~Tp~~l~med~d~i 96 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIR--I--QADQAPEDLDMEDNDII 96 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHH-hCCCcceEEEEE--CCEE--c--CCCCCHHHcCCCCCCEe
Confidence 45677888876 7888889999999999999875444 254555555543 3443 3 5689999999884 444
No 441
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=26.75 E-value=1.2e+02 Score=24.98 Aligned_cols=67 Identities=3% Similarity=-0.174 Sum_probs=35.6
Q ss_pred cCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHHhccE-EEEEeecCChhHH-HHHHhCCCCCCcEEEEEeC
Q 019378 77 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTISTNF-IFWQVYDDTSEGK-KVCTYYKLDSIPVVLVVDP 146 (342)
Q Consensus 77 ~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i~~~F-V~w~~~~~s~eg~-~~~~~y~v~~~P~l~ii~p 146 (342)
.+||++||++- .+++.|..=... -++...+|-..+. .++++..+++... +++..+++. -|+-++-|+
T Consensus 41 ~gk~vVL~fyP~~fTp~Ct~e~~~--f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~~-~~f~lLSD~ 110 (171)
T 2xhf_A 41 RGRKGILFSVVGAFVPGSNNHIPE--YLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPE-HKIRMLADM 110 (171)
T ss_dssp TTSEEEEEECSCTTCTTTTSSHHH--HHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCTT-CCSEEEECT
T ss_pred CCCeEEEEEECCCCCCcCHHHHHH--HHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCC-CCeEEEEeC
Confidence 46888888875 345555421110 0112233334467 4888888887664 356666542 134444454
No 442
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=26.30 E-value=3.2e+02 Score=24.20 Aligned_cols=119 Identities=11% Similarity=0.069 Sum_probs=64.1
Q ss_pred chhHHHHHHhhCCCCcCcc-cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC
Q 019378 45 DSSRDNLASLYRPPFHLMF-NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT 123 (342)
Q Consensus 45 ~~~~~~l~~~f~pp~~~~f-~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s 123 (342)
..-..-+.++.+++...+- ...+++.+. ...++.+|+|... ......|. .+..-+++.+.|+.+....
T Consensus 131 ~~i~~fl~~~~~~~v~~i~~~~~l~~~l~---~~~~~~vi~fs~~-~~~~~~f~-------~~A~~~~~~~~F~~v~~~~ 199 (298)
T 3ed3_A 131 APIVDFSLSRIRSYVKKFVRIDTLGSLLR---KSPKLSVVLFSKQ-DKISPVYK-------SIALDWLGKFDFYSISNKK 199 (298)
T ss_dssp HHHHHHHHTTCCCCEEECSCGGGHHHHHT---SCSSEEEEEEESS-SSCCHHHH-------HHHHHTBTTEEEEEEEGGG
T ss_pred HHHHHHHHHhcccccEEcCCHHHHHHHHh---cCCceEEEEEcCC-CcchHHHH-------HHHHHhhcCcEEEEEcchH
Confidence 3445555566555543332 234444333 3368888887443 33333442 3444455677787765432
Q ss_pred hhH----HHHHHh--------------CCCCCCcEEEEEeCCCCceEEEEeC-CCChHHHHHHHHhhhhcC
Q 019378 124 SEG----KKVCTY--------------YKLDSIPVVLVVDPITGQKMRSWCG-MVQPESLLEDLVPFMDGG 175 (342)
Q Consensus 124 ~eg----~~~~~~--------------y~v~~~P~l~ii~p~tG~~l~~~~G-~~~~~~~l~~L~~~l~~~ 175 (342)
... .++... -....+|+|+++.+.. +......| ..+.+++.+.|..-....
T Consensus 200 ~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~-~~~~~y~g~~~~~~~i~~fi~~~~~~~ 269 (298)
T 3ed3_A 200 LKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADK-DKFWEYEGNSINKNDISKFLRDTFSIT 269 (298)
T ss_dssp CCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTT-TEEEECCCSSCCHHHHHHHHHHHHTCC
T ss_pred hhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCC-CceEEeccccCCHHHHHHHHHhhcCCC
Confidence 110 011111 1236799999999754 44556664 678888887666544443
No 443
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=25.84 E-value=94 Score=25.74 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=30.4
Q ss_pred HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+.+..+++.++|+++| +|+ .+.|..+.+.|...|......
T Consensus 158 ~~a~~~Gv~G~Ptfvi----~g~---~~~G~~~~~~l~~~l~~~~~~ 197 (203)
T 2imf_A 158 HAAIERKVFGVPTMFL----GDE---MWWGNDRLFMLESAMGRLCRQ 197 (203)
T ss_dssp HHHHHTTCCSSSEEEE----TTE---EEESGGGHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCcCCEEEE----CCE---EEECCCCHHHHHHHHhccccc
Confidence 3467889999999887 465 467988888888877766543
No 444
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}
Probab=25.76 E-value=3.1e+02 Score=23.35 Aligned_cols=93 Identities=11% Similarity=0.237 Sum_probs=53.3
Q ss_pred ccHHHHHHHHHH-cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378 65 GSFEKAKDAASV-QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 143 (342)
Q Consensus 65 gs~~eA~~~Ak~-~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i 143 (342)
.+.+++-..-.. ...+++.||.+........|. ++.+-++.++.|.... + ..++..|++.. |.|++
T Consensus 12 ~s~~~~~~~~~~~~~v~vVgff~~~~~~~~~~F~-------~~A~~lr~~~~F~~t~--~---~~v~~~~~v~~-p~ivl 78 (250)
T 3ec3_A 12 LTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQ-------DAANTLREDYKFHHTF--S---TEIAKFLKVSL-GKLVL 78 (250)
T ss_dssp CCHHHHHHHHHHCSSCEEEEECSCTTCHHHHHHH-------HHHHHHTTTCCEEEEC--C---HHHHHHHTCCS-SEEEE
T ss_pred CCHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHH-------HHHHhhhcCcEEEEEC--c---HHHHHHcCCCC-CeEEE
Confidence 455665544344 555666666654334444442 4666777787777632 2 34666788876 99999
Q ss_pred EeCCC-----CceEEEEe--CCCChHHHHHHHHh
Q 019378 144 VDPIT-----GQKMRSWC--GMVQPESLLEDLVP 170 (342)
Q Consensus 144 i~p~t-----G~~l~~~~--G~~~~~~~l~~L~~ 170 (342)
.-|.. .+.-.... |..+.+.+...+..
T Consensus 79 fk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~ 112 (250)
T 3ec3_A 79 MQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVK 112 (250)
T ss_dssp ECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred EecchhhccccccceeccCCCCCCHHHHHHHHHH
Confidence 87620 11122345 46777776554443
No 445
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=25.59 E-value=42 Score=27.81 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=27.8
Q ss_pred CeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeec
Q 019378 79 KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYD 121 (342)
Q Consensus 79 K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~ 121 (342)
++.+|.|.+.+|+.|..|...+=..+.+.+.+.+ .|+...+..
T Consensus 15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 59 (189)
T 3l9v_A 15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSL 59 (189)
T ss_dssp CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSS
T ss_pred CCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechh
Confidence 6789999999999999997543012445443333 455555444
No 446
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=25.43 E-value=34 Score=33.25 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=34.6
Q ss_pred HHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhh
Q 019378 50 NLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHML 96 (342)
Q Consensus 50 ~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f 96 (342)
.-++.|+|-.+++--.++++|++.|......|-.++++.+......|
T Consensus 337 ~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~ 383 (468)
T 1vlu_A 337 FDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANAEKF 383 (468)
T ss_dssp ------CCCCEEEECCSHHHHHHHHTTSCSSCEEEEECSCHHHHHHH
T ss_pred hhcCccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHH
Confidence 34578999999988899999999999999999999998764444443
No 447
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=25.29 E-value=1.1e+02 Score=22.80 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=51.9
Q ss_pred ccccHHHHHHHHHHcCCeEEEEEecC-CCc----chhhhhhc---ccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCC
Q 019378 63 FNGSFEKAKDAASVQDKWLLVNLQST-KEF----SSHMLNRD---TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYK 134 (342)
Q Consensus 63 f~gs~~eA~~~Ak~~~K~LlV~l~~~-~~~----~~~~f~rd---vl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~ 134 (342)
-..++.+|++.-.+.+.--+..+.++ +.. .-.-+.+. -..+..|.++++. .++..-+..-.++......+
T Consensus 20 ~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~- 97 (127)
T 3nqr_A 20 RNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQ- 97 (127)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHCBC-CCEEETTCBHHHHHHHHHHT-
T ss_pred CCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHcCC-CeEECCCCcHHHHHHHHHhc-
Confidence 35788899888766554333333332 221 11111111 1245568888855 44333233334455544444
Q ss_pred CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378 135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
.++++.|++. .|+++ |.++..+++..|
T Consensus 98 --~~~~lpVvd~-~g~~~----Giit~~dll~~l 124 (127)
T 3nqr_A 98 --RYHMAIVIDE-FGGVS----GLVTIEDILELI 124 (127)
T ss_dssp --TCCEEEEECT-TSCEE----EEEEHHHHHHHC
T ss_pred --CCeEEEEEeC-CCCEE----EEEEHHHHHHHH
Confidence 5677888884 56654 666777777654
No 448
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19
Probab=24.83 E-value=1.4e+02 Score=26.75 Aligned_cols=83 Identities=11% Similarity=0.082 Sum_probs=47.8
Q ss_pred eEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEE--EEEee-cC-------------ChhHHHHHHhCCCCCC--cEE
Q 019378 80 WLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFI--FWQVY-DD-------------TSEGKKVCTYYKLDSI--PVV 141 (342)
Q Consensus 80 ~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV--~w~~~-~~-------------s~eg~~~~~~y~v~~~--P~l 141 (342)
..+..+.+++|..|..-.+- |..-. .+.++| -|.++ ++ +.....+.+.|+..++ |.+
T Consensus 44 ~~VelyTs~gCp~C~~Ak~l-L~~~~----~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI 118 (270)
T 2axo_A 44 GVVELFTSQGCASCPPADEA-LRKMI----QKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQA 118 (270)
T ss_dssp CEEEEEECTTCTTCHHHHHH-HHHHH----HHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEE
T ss_pred cEEEEEeCCCCCChHHHHHH-HHHhh----ccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEE
Confidence 46667778899999987421 11111 122444 33322 12 2234457888999888 997
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378 142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~ 174 (342)
+| +|+. .+.|+ +++.+...|......
T Consensus 119 ~I----ng~~--~v~G~-d~~~l~~~l~~~~~~ 144 (270)
T 2axo_A 119 IL----NGRD--HVKGA-DVRGIYDRLDAFKRE 144 (270)
T ss_dssp EE----TTTE--EEETT-CHHHHHHHHHHHHHT
T ss_pred EE----CCEE--eecCC-CHHHHHHHHHHhhcc
Confidence 76 3552 13454 677777777665443
No 449
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=24.81 E-value=1.6e+02 Score=23.23 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=35.0
Q ss_pred ccccHHHHHHHH---HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEE
Q 019378 63 FNGSFEKAKDAA---SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIF 116 (342)
Q Consensus 63 f~gs~~eA~~~A---k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~ 116 (342)
+.-+|++-+++| -..++.+=||+.. +||+|+.+...+..|-|+
T Consensus 53 ~~~~Fd~~~~~A~YyYtTG~~vrvY~~~-----------nVWtdp~F~~~fS~NeLv 98 (126)
T 3dwa_A 53 WGASFSTLYNQALYFYTTGQPVRIYYEP-----------GVWTYPPFVKALTSNALV 98 (126)
T ss_dssp SGGGHHHHHHHHHHHHHHCCEEEEEEET-----------TCCCCHHHHHHSCSCEEE
T ss_pred ccccHHHHHHHhHhhhhcCCcEEEEEec-----------CcccChhHhhhhcccceE
Confidence 456788888888 4788999999887 799999999998877544
No 450
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=24.60 E-value=1.4e+02 Score=29.20 Aligned_cols=48 Identities=10% Similarity=-0.063 Sum_probs=38.6
Q ss_pred eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCC-CcCeEEEec
Q 019378 264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSE-MKPFRLTHA 311 (342)
Q Consensus 264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~-~~~f~L~~~ 311 (342)
...+.|.||||+.+.-.+..+.++++|++-|..++.-.+ ..-|-|...
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 478899999999999999999999999999988763222 346888653
No 451
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=24.48 E-value=2.2e+02 Score=21.15 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=34.1
Q ss_pred CCCeeEEEEECCC---Cc--eEEEEeCCCCchHHHHHHHHhh-cCCCCCcCeEEEecCCC
Q 019378 261 RSLLCRVGVRLPD---GR--RMQRNFLRTDPIQLLWSYCYSQ-LEGSEMKPFRLTHAIPG 314 (342)
Q Consensus 261 ~~~~~~i~iRlP~---G~--r~~rrF~~~~~l~~l~~fv~~~-~~~~~~~~f~L~~~fPr 314 (342)
.+++|-|+|++-+ |. +-..-...+.+=+.|..-+..+ +++.....|+|++-.|.
T Consensus 2 ~~d~~iIRVs~e~~~~Gn~YKSIlltsqDktp~vI~~al~Khnl~~~~~~~y~L~Q~Lp~ 61 (90)
T 1rlf_A 2 SSDCRIIRVQMELGEDGSVYKSILVTSQDKAPSVISRVLKKNNRDSAVASEFELVQLLPG 61 (90)
T ss_dssp CSCEEEEEEEECCSSSCCSCCEEEEETTCCCTTHHHHHHHHTTTTSCCCCCEEEEETTTT
T ss_pred CCceEEEEEEEEeCCCCceEEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcCC
Confidence 4677888888764 43 3444445555555555555554 34445789999999984
No 452
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=24.38 E-value=79 Score=23.27 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=54.3
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCC----cchhhhhh----c-ccCCHHHHHHHhccEEEEEeecCChhHHHHHHh
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKE----FSSHMLNR----D-TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTY 132 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~----~~~~~f~r----d-vl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~ 132 (342)
-...++.+|+..-.+.+.-.++.+. .+. ..-..+.+ . .+.+..|.+++..+++....+.+-.++......
T Consensus 15 ~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~ 93 (125)
T 1pbj_A 15 DITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVK 93 (125)
T ss_dssp ETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCCeEECCCCCHHHHHHHHHh
Confidence 3456899998887665443332232 221 11111111 1 123556777777776666555555566666555
Q ss_pred CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378 133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 168 (342)
Q Consensus 133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L 168 (342)
.+ +..+.|++. |+ +.|.++..+++..+
T Consensus 94 ~~---~~~l~Vvd~--~~----~~Gvit~~dl~~~l 120 (125)
T 1pbj_A 94 NV---VWRLLVEED--DE----IIGVISATDILRAK 120 (125)
T ss_dssp HT---CSEEEEEET--TE----EEEEEEHHHHHHHH
T ss_pred cC---CcEEEEEEC--CE----EEEEEEHHHHHHHH
Confidence 54 556677784 55 44777788887655
No 453
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=24.28 E-value=79 Score=24.32 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=27.1
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEEEeC-CCChHHHHHHH
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCG-MVQPESLLEDL 168 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G-~~~~~~~l~~L 168 (342)
.++.+.+++..+|.++| +|+++ ..| +.+.++|.+.+
T Consensus 65 ~~~L~~~G~~~LP~~~V----DGevv--~~G~yPt~eEl~~~l 101 (106)
T 3ktb_A 65 NDFLQKHGADALPITLV----DGEIA--VSQTYPTTKQMSEWT 101 (106)
T ss_dssp HHHHHTTCGGGCSEEEE----TTEEE--ECSSCCCHHHHHHHH
T ss_pred HHHHHHcCcccCCEEEE----CCEEE--EeccCCCHHHHHHHh
Confidence 45667899999999886 57875 556 57888887655
No 454
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=24.06 E-value=21 Score=34.36 Aligned_cols=39 Identities=5% Similarity=0.058 Sum_probs=32.0
Q ss_pred HHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCC
Q 019378 52 ASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE 90 (342)
Q Consensus 52 ~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~ 90 (342)
++.|||-.+++--.++++|++.|......|-.|+++.+.
T Consensus 338 eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~ 376 (444)
T 4ghk_A 338 TEYLAPVLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDH 376 (444)
T ss_dssp CC---CEEEEEEESSHHHHHHHHHHHSCSSEEEEECSBH
T ss_pred ccccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCH
Confidence 578999999888899999999999999999999998653
No 455
>2ptl_A Protein L; binding protein(immunoglobulin L chain); NMR {Finegoldia magna} SCOP: d.15.7.1
Probab=22.77 E-value=1.9e+02 Score=19.95 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=26.4
Q ss_pred CeeEEEEECCCCceEEEEeCCC--CchHHHHHHHHhh
Q 019378 263 LLCRVGVRLPDGRRMQRNFLRT--DPIQLLWSYCYSQ 297 (342)
Q Consensus 263 ~~~~i~iRlP~G~r~~rrF~~~--~~l~~l~~fv~~~ 297 (342)
-+++.-+-+.||+..+-.|..+ .....-|.|....
T Consensus 18 vtikanli~adg~tqtaefkgtfe~at~eay~yad~l 54 (78)
T 2ptl_A 18 VTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTL 54 (78)
T ss_dssp EEEEEEEECSSSCCEEEEEEESSHHHHHHHHHHHHTT
T ss_pred EEEEEEEEEccCceeeeeecCcHHHHHHHHHHHHHHH
Confidence 3555666789999999999866 5667788887763
No 456
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=22.24 E-value=86 Score=24.27 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=27.7
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEEEeC-CCChHHHHHHHH
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCG-MVQPESLLEDLV 169 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G-~~~~~~~l~~L~ 169 (342)
.++.+.+++..+|.++| +|+++ ..| +.+.++|.+.+.
T Consensus 62 ~~~L~~~G~~~LP~~~V----DGevv--~~G~yPt~eEl~~~lg 99 (110)
T 3kgk_A 62 KAFIEASGAEGLPLLLL----DGETV--MAGRYPKRAELARWFG 99 (110)
T ss_dssp HHHHHHHCGGGCCEEEE----TTEEE--EESSCCCHHHHHHHHT
T ss_pred HHHHHHcCcccCCEEEE----CCEEE--EeccCCCHHHHHHHhC
Confidence 45667899999999886 57876 556 678888876554
No 457
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=22.20 E-value=70 Score=24.94 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=57.7
Q ss_pred cCcccccHHHHHHHHHHcC-CeEEEEEecCCC----cchhhhhhcc------cCCHHHHHHHhccEEEEEeecCChhHHH
Q 019378 60 HLMFNGSFEKAKDAASVQD-KWLLVNLQSTKE----FSSHMLNRDT------WANEAVSQTISTNFIFWQVYDDTSEGKK 128 (342)
Q Consensus 60 ~~~f~gs~~eA~~~Ak~~~-K~LlV~l~~~~~----~~~~~f~rdv------l~~~~V~~~i~~~FV~w~~~~~s~eg~~ 128 (342)
.+--..++.+|+..-.+.+ ..+.| .. .+. ..-..+.+.+ +.+..|.+++..+++....+..-.++..
T Consensus 25 ~v~~~~~~~~a~~~~~~~~~~~~~V-~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~ 102 (157)
T 4fry_A 25 TVTKNDFVYDAIKLMAEKGIGALLV-VD-GDDIAGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMA 102 (157)
T ss_dssp EEETTSBHHHHHHHHHHHTCSEEEE-ES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBSSCCCBCTTSBHHHHHH
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEE-ee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCCCCcEECCCCcHHHHHH
Confidence 3344678999998876554 44444 33 222 1122222211 2355688888777666554444456666
Q ss_pred HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
+...++ +..+.|++ .|++ .|.++..+++..+..
T Consensus 103 ~m~~~~---~~~lpVvd--~g~~----~Giit~~dil~~l~~ 135 (157)
T 4fry_A 103 LMTEHR---MRHLPVLD--GGKL----IGLISIGDLVKSVIA 135 (157)
T ss_dssp HHHHHT---CSEEEEEE--TTEE----EEEEEHHHHHHHHHT
T ss_pred HHHHcC---CCEEEEEE--CCEE----EEEEEHHHHHHHHHH
Confidence 555554 45667778 4654 477778888776654
No 458
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=22.08 E-value=37 Score=25.18 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=26.2
Q ss_pred cCcccccHHHHHHHH--HHcCCeEEEEEecCCCcchhh
Q 019378 60 HLMFNGSFEKAKDAA--SVQDKWLLVNLQSTKEFSSHM 95 (342)
Q Consensus 60 ~~~f~gs~~eA~~~A--k~~~K~LlV~l~~~~~~~~~~ 95 (342)
.++...+|++|...| -+++|+++|||..-+....+.
T Consensus 8 vv~~P~sy~Da~~I~d~Lr~~~~VvvNL~~ld~~~AqR 45 (87)
T 3p04_A 8 VPVELHSFEDAQVIGGAFRDGDAVVFDMSLLSREEARR 45 (87)
T ss_dssp EEEECSSGGGHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EEEecCcHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Confidence 345567888887766 789999999999865444343
No 459
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=21.96 E-value=2.5e+02 Score=20.99 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=48.4
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHH-HHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceE
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSY-CYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMI 337 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~f-v~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l 337 (342)
...++|.|+ -+|..+.-+-..+.+++.|++- |... |.......++-. ... + ..+.|=+++|+. +..|
T Consensus 19 ~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~--gv~~~sirFlfD--G~r--I--~~~~TP~~L~meD~DiI 87 (95)
T 2l76_A 19 PRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHL--GVSPSRILLLFG--ETE--L--SPTATPRTLKLGVADII 87 (95)
T ss_dssp CCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHH--TSCGGGEEEEET--TEE--C--CTTSCHHHHTCCSSCEE
T ss_pred CCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhc--CCChhhEEEEEC--CcC--C--CCCCCHhHcCCCCCCEE
Confidence 345889999 5888999999999999999875 4433 666666665542 332 2 668899999997 4544
No 460
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=21.71 E-value=86 Score=25.01 Aligned_cols=62 Identities=8% Similarity=0.127 Sum_probs=37.8
Q ss_pred CHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378 103 NEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 173 (342)
Q Consensus 103 ~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~ 173 (342)
+..|.+++..+++....+..-.++....... .++++.|++ .|++ .|.++..+++..+.....
T Consensus 107 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~---~~~~l~Vvd--~g~~----vGiit~~dll~~l~~~~~ 168 (185)
T 2j9l_A 107 TLKLRNILDLSPFTVTDLTPMEIVVDIFRKL---GLRQCLVTH--NGRL----LGIITKKDVLKHIAQMAN 168 (185)
T ss_dssp CEECGGGEESSCCEEETTSBHHHHHHHHHHH---TCSEEEEEE--TTEE----EEEEEHHHHHHHHHHHCC
T ss_pred CccHHHhhCcCCeEeCCCCCHHHHHHHHHhC---CCcEEEEEE--CCEE----EEEEEHHHHHHHHHHhhc
Confidence 3345556655666555444445555555554 456777787 5654 477788888887765544
No 461
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=21.70 E-value=31 Score=33.49 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=35.4
Q ss_pred HHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCc
Q 019378 52 ASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEF 91 (342)
Q Consensus 52 ~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~ 91 (342)
++.|||-.+++--.++++|++.|......|-.|+++.+..
T Consensus 349 eEiFGPVl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~ 388 (469)
T 3sza_A 349 EEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDK 388 (469)
T ss_dssp SCCCSSEEEEEECSSHHHHHHHHHHSCCCSEEEEECSCHH
T ss_pred ccccCCeEEEEecCCHHHHHHHHHcCCCCceEEEECCCHH
Confidence 5889999998888999999999999999999999987533
No 462
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=21.56 E-value=71 Score=23.96 Aligned_cols=97 Identities=9% Similarity=0.026 Sum_probs=54.9
Q ss_pred cccccHHHHHHHHHHcCCeEEEEEecCCC----cchhhhhh-----cc-cCCHHHHHHHhccEEEEEeecCChhHHHHHH
Q 019378 62 MFNGSFEKAKDAASVQDKWLLVNLQSTKE----FSSHMLNR-----DT-WANEAVSQTISTNFIFWQVYDDTSEGKKVCT 131 (342)
Q Consensus 62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~----~~~~~f~r-----dv-l~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~ 131 (342)
--..++.+|+..-.+.+.--++.+...+. .....+.+ .. +.+..|.+++..+++....+..-.++.....
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~ 101 (133)
T 1y5h_A 22 GEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVME 101 (133)
T ss_dssp ETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCCCEETTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCCEEECCCCCHHHHHHHHH
Confidence 34568999998876554333333322211 11122211 11 1345688888888777765555566666655
Q ss_pred hCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHH
Q 019378 132 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLED 167 (342)
Q Consensus 132 ~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~ 167 (342)
.. .+.++.|++. |+ +.|.++..+++..
T Consensus 102 ~~---~~~~l~Vvd~--g~----~~Giit~~dil~~ 128 (133)
T 1y5h_A 102 EH---QVRRVPVISE--HR----LVGIVTEADIARH 128 (133)
T ss_dssp HH---TCSEEEEEET--TE----EEEEEEHHHHHHT
T ss_pred Hc---CCCEEEEEEC--CE----EEEEEEHHHHHHH
Confidence 55 4566778884 65 4466777777653
No 463
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=21.48 E-value=78 Score=25.36 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=55.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEEecC-CCcc----hhhhhhccc--CCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCC
Q 019378 64 NGSFEKAKDAASVQDKWLLVNLQST-KEFS----SHMLNRDTW--ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD 136 (342)
Q Consensus 64 ~gs~~eA~~~Ak~~~K~LlV~l~~~-~~~~----~~~f~rdvl--~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~ 136 (342)
..++.+|+..-.+.+---++.+.++ +..- -.-+.+-.. .+..|.+++ .+.++..-+..-.++..+...++
T Consensus 60 ~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~-- 136 (172)
T 3lhh_A 60 NLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTG-- 136 (172)
T ss_dssp TSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcC--
Confidence 5689999988877654444333332 2211 111111111 123455666 56666655555556666666664
Q ss_pred CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378 137 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170 (342)
Q Consensus 137 ~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~ 170 (342)
++.+.|++. .|+++ |.++..+++..|..
T Consensus 137 -~~~~pVvd~-~g~lv----Giit~~Dil~~l~~ 164 (172)
T 3lhh_A 137 -SQMVFVVDE-YGDLK----GLVTLQDMMDALTG 164 (172)
T ss_dssp -CSEEEEECT-TSCEE----EEEEHHHHHHHHHT
T ss_pred -CeEEEEEeC-CCCEE----EEeeHHHHHHHHhC
Confidence 577778884 46644 77778888876654
No 464
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.17 E-value=2.7e+02 Score=20.97 Aligned_cols=53 Identities=11% Similarity=0.022 Sum_probs=43.1
Q ss_pred CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCC
Q 019378 262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPG 314 (342)
Q Consensus 262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr 314 (342)
.+..-|+|=+.||+...--...+.|.++|..-+..+..-.....+.|+-.+|-
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~ 59 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPH 59 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETT
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 34467888889999999999999999999999877653334678999988774
No 465
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=21.16 E-value=1.3e+02 Score=24.72 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=25.4
Q ss_pred HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCCh------HHHHHHHHhhhh
Q 019378 127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP------ESLLEDLVPFMD 173 (342)
Q Consensus 127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~------~~~l~~L~~~l~ 173 (342)
.+.+..+++.++|+++| +|+.+-.-.|..+. +.+++.+...+.
T Consensus 135 ~~~a~~~gv~GtPt~~v----ng~~~v~~~~~~~~~~~~~~~~~~~~i~~Li~ 183 (189)
T 3l9v_A 135 ERLFKEYGVRGTPSVYV----RGRYHINNAAFGAFSVENFRSRYAAVVRKLLA 183 (189)
T ss_dssp HHHHHHTTCCSSSEEEE----TTTEEECGGGCCCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCccCEEEE----CCEEEECccccccccccchHHHHHHHHHHHHh
Confidence 34567899999999997 46643222222232 556555554444
No 466
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.13 E-value=61 Score=24.71 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=27.5
Q ss_pred CCCcCcccccHHHHHHHHHHcCCeEEEEEecCC
Q 019378 57 PPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTK 89 (342)
Q Consensus 57 pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~ 89 (342)
.+.-+..+..|+||++.|.+++.-|-++++...
T Consensus 64 D~V~i~Sq~E~eEAlkva~k~~n~L~m~V~~~~ 96 (101)
T 1wj6_A 64 EEVSINSQGEYEEALKMAVKQGNQLQMQVHEGS 96 (101)
T ss_dssp CEECCCSHHHHHHHHHHHHHHTSEEEEECCBCC
T ss_pred CEEEEecHHHHHHHHHHhccCCCEEEEEEeecc
Confidence 344567788999999999999999999998743
No 467
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}
Probab=20.94 E-value=3.4e+02 Score=23.11 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=34.9
Q ss_pred cEEEEEeecCChhHHHHHHhCCCCC--C-cEEEEEeCCCCceEEEEe-CCCChHHHHHHHHhhhhc
Q 019378 113 NFIFWQVYDDTSEGKKVCTYYKLDS--I-PVVLVVDPITGQKMRSWC-GMVQPESLLEDLVPFMDG 174 (342)
Q Consensus 113 ~FV~w~~~~~s~eg~~~~~~y~v~~--~-P~l~ii~p~tG~~l~~~~-G~~~~~~~l~~L~~~l~~ 174 (342)
.+.|.-+|... ....+..|++.. + |.+++++. .|. ...+. +.++++.+...+..+++-
T Consensus 168 ki~F~~~d~~~--~~~~l~~fgl~~~~~~p~~~~~~~-~~~-ky~~~~~~~t~~~i~~Fv~~~~~G 229 (250)
T 3ec3_A 168 EYTFAIADEED--YATEVKDLGLSESGGDVNAAILDE-SGK-KFAMEPEEFDSDALREFVMAFKKG 229 (250)
T ss_dssp TSEEEEEETTT--THHHHHHTTCSSCSCSCEEEEECT-TSC-EEECCCCSCCHHHHHHHHHHHHTT
T ss_pred ceeEEEEcHHH--HHHHHHHcCCCccCCCcEEEEEcC-CCc-eecCCcccCCHHHHHHHHHHHHCC
Confidence 34444345433 334567888753 4 57888873 443 33344 568888888777777764
No 468
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=20.66 E-value=75 Score=28.88 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=34.8
Q ss_pred CCCeeEEEEECCCCceEEEEeCC--CCchHHHHHHHHhhcCCCCCcCeEEEecCCC
Q 019378 261 RSLLCRVGVRLPDGRRMQRNFLR--TDPIQLLWSYCYSQLEGSEMKPFRLTHAIPG 314 (342)
Q Consensus 261 ~~~~~~i~iRlP~G~r~~rrF~~--~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr 314 (342)
..+..+|.|.|+||+.+.-.|.. +.|+++|.+-+ .+......-|-|...-|.
T Consensus 2 ~~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~l--gL~~~~~~~FaL~~~~~~ 55 (322)
T 4dxa_B 2 SPEFEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGM--RLSQETQQYFTIWICSEN 55 (322)
T ss_dssp ---CCEEEEECTTSCEEEEECTTGGGCCHHHHHTTS--SCCTTGGGGEEEEEECSS
T ss_pred CCCceEEEEEEECCcEEEEEEcCCCCCcHHHHHHHh--CcCccccCeeEEEEECCc
Confidence 34678999999999999999999 99999994321 111112335888765443
No 469
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=20.65 E-value=1.3e+02 Score=20.35 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=21.8
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHH
Q 019378 266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYC 294 (342)
Q Consensus 266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv 294 (342)
.|.|.+|||+. +.|....|+.+|..-+
T Consensus 2 ~i~i~~p~g~~--~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 2 EVMVFTPKGEI--KRLPQGATALDFAYSL 28 (73)
T ss_dssp CEEEECTTCCE--EEECTTCBHHHHHHHH
T ss_pred eEEEEcCCCCE--EEcCCCCcHHHHHHHH
Confidence 37889999974 7899888988887655
No 470
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=20.64 E-value=28 Score=33.78 Aligned_cols=39 Identities=18% Similarity=0.031 Sum_probs=34.9
Q ss_pred HHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCC
Q 019378 52 ASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE 90 (342)
Q Consensus 52 ~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~ 90 (342)
++.|||-.+++--.++++|++.|......|-.++++.+.
T Consensus 363 eEiFGPVl~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~ 401 (474)
T 4h7n_A 363 EETFGPIMPVMPFPDVEEAVYLANDTIYGLSAAVFAGSE 401 (474)
T ss_dssp SCCCSSEEEEEEESSHHHHHHHHHCSSCCSEEEEECSSH
T ss_pred ccccCcEEEEEEECCHHHHHHHHHcCCCCCeEEEEeCCH
Confidence 678999999988999999999999999999999998653
No 471
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=20.30 E-value=30 Score=33.13 Aligned_cols=46 Identities=2% Similarity=-0.089 Sum_probs=37.1
Q ss_pred HHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhh
Q 019378 51 LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHML 96 (342)
Q Consensus 51 l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f 96 (342)
-++.|+|-.+++--.++++|++.|......|-.++++.+......|
T Consensus 320 ~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~ 365 (427)
T 1o20_A 320 PTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKF 365 (427)
T ss_dssp TCCCCSSEEEEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHH
T ss_pred hcccccceEEEEEECCHHHHHHHHHhCCCCCeEEEEeCCHHHHHHH
Confidence 3567899888888899999999999999999999998754433333
No 472
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=20.16 E-value=35 Score=32.93 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=37.3
Q ss_pred HHhhCCCCcCcccccHHHHHHHHHH-cCCeEEEEEecCCCcchhhh
Q 019378 52 ASLYRPPFHLMFNGSFEKAKDAASV-QDKWLLVNLQSTKEFSSHML 96 (342)
Q Consensus 52 ~~~f~pp~~~~f~gs~~eA~~~Ak~-~~K~LlV~l~~~~~~~~~~f 96 (342)
++.|||-.+++--.++++|++.|.. ....|-.++++.+......|
T Consensus 357 eEiFGPVl~v~~~~~~deAi~~aN~~~~~gL~a~v~t~d~~~a~~~ 402 (457)
T 3lns_A 357 EELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGI 402 (457)
T ss_dssp SCCCSSEEEEEEESCHHHHHHHHHHHSCSCSEEEEECSCHHHHHHH
T ss_pred CcccCcEEEEEEeCCHHHHHHHHHcCCCCCeEEEEECCCHHHHHHH
Confidence 5889999988888999999999999 99999999998654433333
No 473
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=20.06 E-value=2.5e+02 Score=20.22 Aligned_cols=72 Identities=8% Similarity=0.138 Sum_probs=50.7
Q ss_pred eeEEEEEC--CCCceEEEEeCCCCchHHHHHHHHhhcC-CCCCcC-eEEEecCCCCccccCCCcCCChhhcCCcCceEEE
Q 019378 264 LCRVGVRL--PDGRRMQRNFLRTDPIQLLWSYCYSQLE-GSEMKP-FRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV 339 (342)
Q Consensus 264 ~~~i~iRl--P~G~r~~rrF~~~~~l~~l~~fv~~~~~-~~~~~~-f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v 339 (342)
.+.|-|.| =+|+.+.-|.+..-++..|.+-|...+. +....+ |.|.-.-+. .....+.+|.|.|+.++.++.
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~----~~L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKD----KVFSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGT----EEEETTSBTGGGTCCTTCEEE
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCC----EEEcCCCEEeeCCcCCCCEEE
Confidence 46677777 4777899999999999999998877532 112223 777543222 224679999999999877654
Done!