BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019380
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WLJ|A Chain A, Human Isg20
Length = 189
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 21/173 (12%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
+ VAMDCEMVG G + L AR LV+ V++ +++P+ +T+YR V+G+T + +
Sbjct: 6 EVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM 64
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
A P + +IL++L K +L+VGH L+HD +L+ + + + DT
Sbjct: 65 VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTIYDT 110
Query: 245 AKYRPLMKTNLVSH----SLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 291
+ R L + + H SL+ L+ L IQ+ + H ED + M LY+
Sbjct: 111 STDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQ 163
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL 63
S+ HKC C K F RKD L HM+ H+ +P KC C + SL +HL
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRC--HTGVKPYKCKTCDYAAADSSSLNKHL 56
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 17 CVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLT 64
C C K+FK K HL+ HMKI H+ +P +C +C K +S H+T
Sbjct: 40 CGVCGKKFKMKHHLVGHMKI--HTGIKPYECNICAKRFMWRDSFHRHVT 86
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 17 CVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAH 71
C C +FKRKD + H++ SV +P +CQ K F S +HL G + + H
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSHDGSVGKP--YICQSCGKGF-SRPDHLNGHIKQVH 89
>pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
Exonuclease Domain From Thermotoga Maritima
pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
Exonuclease Domain From Thermotoga Maritima
Length = 186
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 150 LVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN 203
+VDE +HT ++P ++ E+TG+T+E ++N ++EV + L L +
Sbjct: 44 IVDE-----YHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFLED 92
>pdb|3BG2|A Chain A, Crystal Structure Of Deoxyguanosinetriphosphate
Triphosphohydrolase From Flavobacterium Sp. Med217
pdb|3BG2|B Chain B, Crystal Structure Of Deoxyguanosinetriphosphate
Triphosphohydrolase From Flavobacterium Sp. Med217
Length = 444
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 197 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLV 256
+L + G++ RL ++ RL G E D D + + P L+D + PL KT+ V
Sbjct: 7 LLSLKRQGDTAKRLRIEQDDTRL----GFEVDYDRIIFSAPFRSLQDKTQVIPLSKTDFV 62
Query: 257 ----SHSLK 261
+HSL+
Sbjct: 63 HTRLTHSLE 71
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 17 CVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TG--PLSKA 70
C C K F R DHL EH + H+ +P KC C K + L H TG P
Sbjct: 24 CPECGKSFSRSDHLAEHQRT--HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 71 HCSGIFSDRG 80
C FS R
Sbjct: 82 ECGKSFSQRA 91
>pdb|3KZQ|A Chain A, The Crystal Structure Of The Protein With Unknown
Function From Vibrio Parahaemolyticus Rimd 2210633
pdb|3KZQ|B Chain B, The Crystal Structure Of The Protein With Unknown
Function From Vibrio Parahaemolyticus Rimd 2210633
pdb|3KZQ|C Chain C, The Crystal Structure Of The Protein With Unknown
Function From Vibrio Parahaemolyticus Rimd 2210633
pdb|3KZQ|D Chain D, The Crystal Structure Of The Protein With Unknown
Function From Vibrio Parahaemolyticus Rimd 2210633
pdb|3KZQ|E Chain E, The Crystal Structure Of The Protein With Unknown
Function From Vibrio Parahaemolyticus Rimd 2210633
pdb|3KZQ|F Chain F, The Crystal Structure Of The Protein With Unknown
Function From Vibrio Parahaemolyticus Rimd 2210633
Length = 208
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 34 MKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSG 74
M I + VH P C+ C + E L++ L G + + G
Sbjct: 1 MNIKLYYVHDPMCSWCWGYKPTIEKLKQQLPGVIQFEYVVG 41
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 17 CVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESL----REHLTGPLS 68
CV C K F R L++H ++ H+ +P KC C K L R H +GP S
Sbjct: 17 CVECGKAFSRSSILVQHQRV--HTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 9 KRSTARHKCVACYKQFKRKDHLIEHMKI 36
KR+ + C C+K+F RKD++ H+KI
Sbjct: 35 KRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 17 CVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK 51
C C+K F+R+DHL +H I HS +P KC C K
Sbjct: 48 CDICHKAFRRQDHLRDHRYI--HSKEKPFKCQECGK 81
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 17 CVACYKQFKRKDHLIEHMKISYHSVHQPKCAV 48
C +C K F R DHL H+K + S KC V
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 9.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP 44
HKC C K F + HLI+H +I H+ +P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRI--HTGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,585,796
Number of Sequences: 62578
Number of extensions: 445250
Number of successful extensions: 1226
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 60
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)