BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019380
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 18/197 (9%)
Query: 100 ACSLSAPVPFKIS--GAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENV 157
+ ++ PV IS I+ ++ K +AMDCE VG G G AR+ +V+ +V
Sbjct: 93 STTIKEPVKVGISEDTRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHV 152
Query: 158 IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKA 217
+ +V+P+ V +R V+G+ E +KNA+ KE + K +IL +
Sbjct: 153 VLDEFVKPREKVVEWRTWVSGIKPEHMKNAITFKEAQKKTADIL--------------EG 198
Query: 218 RLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSG 275
R+LVGH L+HDL++L +++P +LRDT+++ P K + SLK LTR L IQ G
Sbjct: 199 RILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTPSLKKLTREVLKISIQEG 258
Query: 276 VHDPYEDCVSVMRLYKR 292
H ED + M LYK+
Sbjct: 259 EHSSVEDARATMLLYKK 275
>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2
Length = 432
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 15/173 (8%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
KA+A+DCEMVG G G + ARV +V++ ++ YV+P PVT+YR V+G+ E++
Sbjct: 252 KALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 311
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
K + VK ++ E+L K R+LVGH L +DL L +++P +RDT
Sbjct: 312 KQGEEFEVVKKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 357
Query: 245 AKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
K++P + SLK L+ LG +Q H +D + MRLY +R+
Sbjct: 358 QKFKPFRSRVKSGRPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKRE 410
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 16/169 (9%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
K +AMDCE VG G G ARV LV+ NV+ +V+P+ VT++R V+G+T + +
Sbjct: 94 KYIAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHM 153
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
KNA+ K+ + ++ +IL K ++LVGH ++HDL++L +++P + DT
Sbjct: 154 KNAVSFKQAQQQLSDIL--------------KDKILVGHAVKHDLEALMLSHPKSKVIDT 199
Query: 245 AKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 291
A++ P + S SLK L + L DIQSG H ED + M +YK
Sbjct: 200 ARHLPFRQKYAKGKSPSLKKLAKEILNMDIQSGQHSSVEDARATMLIYK 248
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 17/168 (10%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
+A+A+DCEMVG G G + ARV +V++ ++ YV+P PVT+YR V+G+ E++
Sbjct: 242 RALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 301
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
K L+ V+ ++ E+L K R+LVGH L +DL L +++P +RDT
Sbjct: 302 KQGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 347
Query: 245 AKYRPLMKTNLVS--HSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY 290
KY+P K+ + S SL+ L+ LG +Q H +D + MRLY
Sbjct: 348 QKYKPF-KSQVKSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLY 394
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 15/171 (8%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
K +A+DCEMVG G G ARV +VD I+ +YV+P+ VTN+R V+G++++ +
Sbjct: 132 KYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSM 191
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
+ A +EV+ +I ++L + R+LVGH L+HDL++L +++P +RDT
Sbjct: 192 RFARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIRDT 237
Query: 245 AKYRPLMK-TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFR 294
AK+ K N SL+ L + LG +IQ G H ED + M L+++ +
Sbjct: 238 AKFSGFKKYANGRKPSLRVLAQQLLGVEIQGGEHSSIEDARATMLLFRKHK 288
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 17/184 (9%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
K +AMDCE VG G GT ARV +V+ + +F +V+P+ VT++R V+G+T + +
Sbjct: 98 KYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHM 157
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
A+ +E +++ ++L + R+LVGH + HDLD+L +++P +RDT
Sbjct: 158 NEAISFQEAQNETSKLL--------------EGRILVGHAIHHDLDALFLSHPKSRIRDT 203
Query: 245 AKYRPLMKTNL-VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI 303
++Y+P ++ + SLK L+ +L DIQ H ED + M L++ R++ Q I
Sbjct: 204 SQYKPFRSISMGKTPSLKKLSSHFLKIDIQGSAHSSVEDARATMLLFRLHRKEFEQ--SI 261
Query: 304 GNQN 307
QN
Sbjct: 262 RTQN 265
>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2
Length = 421
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
+ VAMDCEMVG G +G + ARV +V+ ++ YV+P VT+YR V+G+ ED+
Sbjct: 233 RTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDV 292
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
K P K V+ ++ EIL + R LVGH + +DL L +++P +RDT
Sbjct: 293 KKGEPFKVVQKEVSEIL--------------RGRTLVGHAVHNDLKILFLDHPKKAIRDT 338
Query: 245 AKYRPL-MKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY 290
KY+P K SLK L L +Q+G H +D + MRLY
Sbjct: 339 QKYKPFKQKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLY 385
>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX4 PE=3 SV=1
Length = 294
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 16/175 (9%)
Query: 119 RTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTG 178
RT K V+MDCE VG G +G ARV +V+ NV+ +V+P+ PVT++R V+G
Sbjct: 112 RTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSG 171
Query: 179 LTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD 238
+ + NA+ ++ + ++ +L K R+LVGH + HDL +L +++P
Sbjct: 172 IKPHHMANAVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPR 217
Query: 239 HMLRDTAKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 291
M+RDT+++ P + + + SLK LT+ L DIQ G H ED + M LYK
Sbjct: 218 RMIRDTSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYK 272
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 15/171 (8%)
Query: 127 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 186
+A+DCEMVG G NG + ARV +V+ VI T+VQP+ PVT+YR ++G+ + D+
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192
Query: 187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 246
A EV ++ +L++ ++L+GH +++DL L + +P + RDT K
Sbjct: 193 APQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDTQK 238
Query: 247 YRPLMKTNLVSH-SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
Y+PL + LK L+ LG IQ+G H D M LY+ +++
Sbjct: 239 YKPLQEIAKNKRPGLKKLSELLLGVQIQTGAHSSVVDARVAMALYRLHKKE 289
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 15/171 (8%)
Query: 127 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 186
+A+DCEMVG G NG + ARV +V+ VI T+VQP+ PVT+YR ++G+ + D+
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192
Query: 187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 246
A EV ++ +L++ ++L+GH +++DL L + +P + RDT K
Sbjct: 193 APQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDTQK 238
Query: 247 YRPLMKTNLVSH-SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
Y+PL + LK L+ LG IQ+G H D M LY+ +++
Sbjct: 239 YKPLQEIAKNKRPGLKKLSELLLGVQIQTGAHSSVVDARVAMALYRLHKKE 289
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 15/167 (8%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
+ VAMDCEMVG G +G + ARV +V+ ++ YV+P VT+YR V+G+ +DI
Sbjct: 227 RTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDI 286
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
KN K+V+ ++ EIL + R LVGH + +DL L +++P +RDT
Sbjct: 287 KNGEAFKDVQAEVAEIL--------------RGRTLVGHAVHNDLKILFLDHPKKAIRDT 332
Query: 245 AKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY 290
KY+P K SLK L L +Q+G H +D + MRLY
Sbjct: 333 QKYKPFKEKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLY 379
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 16/170 (9%)
Query: 125 KAVAMDCEMVGGGSNGTLDLC-ARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 183
K VAMDCEMVG G N D ARV +V+ + ++ +YV+P+ +T++R V+G++ +
Sbjct: 115 KYVAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKH 174
Query: 184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRD 243
+ A L++V+ + EIL+ R+LVGH + +DLD+L + +P +RD
Sbjct: 175 MAEARSLEQVQKDVAEILD--------------GRILVGHAVSNDLDALLLGHPKRDIRD 220
Query: 244 TAKYRPLMK-TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKR 292
T+K+ P K S LK L +LG +IQ G H ED + M LY+R
Sbjct: 221 TSKHPPYRKIAGGGSPRLKILASEFLGLNIQDGAHSSVEDAKATMLLYRR 270
>sp|Q5A3Q0|REXO4_CANAL RNA exonuclease 4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX4 PE=3 SV=1
Length = 285
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 17/196 (8%)
Query: 105 APVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQ 164
P P +S ++ R K VA+DCE VG G +G AR+ +++ V+ TYV+
Sbjct: 97 TPKPLPLSR--NDSRKLDPGKYVAIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVR 154
Query: 165 PQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG 224
PQ VT++R V+G+ +++A+ K + K +E++NN ++LVGH
Sbjct: 155 PQERVTDWRTWVSGIQSYHMQDAIDFKTAQLKTMELINN--------------KILVGHA 200
Query: 225 LEHDLDSLRMNYPDHMLRDTAKYRPLMK-TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDC 283
+ +DLD L +++P M+RDT K+ + S SLK L + ++ DIQ G H ED
Sbjct: 201 VNNDLDILFLSHPKSMIRDTCKFPKFREIAGGKSPSLKKLIKHFIQVDIQIGQHSSVEDA 260
Query: 284 VSVMRLYKRFRRQDHQ 299
+ M L++ F+R+ Q
Sbjct: 261 RATMLLFRLFKREIEQ 276
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 104/179 (58%), Gaps = 21/179 (11%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
K +AMDCEMVG + + + ARV +V+ +V++ TYV+P+ VT++R V+G+ +
Sbjct: 92 KYIAMDCEMVGVADD--MSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHM 149
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
++A ++V+ ++ +IL+N R+LVGH + +DL L +++P M+RDT
Sbjct: 150 RDAPSFEKVQAEVAKILDN--------------RVLVGHAVHNDLKVLLLSHPRRMIRDT 195
Query: 245 AK---YRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQV 300
++ YR L K + LK L LG DIQSG H +D + M LYK+ +++ +V
Sbjct: 196 SRFSGYRKLAKGR--TPGLKKLAEVILGRDIQSGQHSSVQDAQATMELYKKVKKEMDEV 252
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 16/169 (9%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
K VAMDCE VG G +G + ARV +V+ + YV+P+ VT++R V+G+T +
Sbjct: 112 KFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRTWVSGITPAHM 171
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
K A+ L+E + ++ +L N R+L+GHGL HDL+ L +++P +RDT
Sbjct: 172 KQAVTLEEAQRRVAAMLKN--------------RVLIGHGLHHDLEMLMVSHPKAQIRDT 217
Query: 245 AKYRPLMKTNLVSH--SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 291
+ + P + SLK L R L DIQ H ED + + LYK
Sbjct: 218 SMHGPFREKYGAGKTPSLKKLAREVLNIDIQGKEHSSVEDARAALLLYK 266
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 103/188 (54%), Gaps = 21/188 (11%)
Query: 127 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 186
+A+DCEMVG G G+ + ARV +V+ I+ +V+PQ VT+YR V+G+ +D+K
Sbjct: 136 LAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPKDLKG 195
Query: 187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 246
A +V+ ++ ++ K ++LVGH +++DL +L +++P ++RDTA
Sbjct: 196 APSFSQVQGEVANLI--------------KGKVLVGHAIQNDLKALLLSHPKVLIRDTAT 241
Query: 247 YRPLMKTNLVSH-SLKYLTRTYLGYDIQ--SGVHDPYEDCVSVMRLYKRFRRQDHQVEE- 302
++PL + SLK L + LG DIQ H ED + M + FR Q + +E
Sbjct: 242 FQPLRDLAKTKYPSLKKLAKLVLGIDIQLEGESHSSVEDARATMAV---FRSQKPKWDEM 298
Query: 303 IGNQNTTG 310
+ +QN G
Sbjct: 299 LRSQNKGG 306
>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4
PE=3 SV=1
Length = 406
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
K +++DCEMVG G +G + AR +VD + I+ +YV+P VT++R V+G+++ +
Sbjct: 215 KYLSIDCEMVGTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWRTHVSGISKRHM 274
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
+A + V+ + +L K R+LVGH ++HDL+ L +P +RDT
Sbjct: 275 ASARSFESVQATVAALL--------------KGRILVGHDVKHDLEVLGFEHPHRDIRDT 320
Query: 245 AKYRPLMK-TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH 298
AKY K + SL+ L + LG +I G H ED M L FR++ H
Sbjct: 321 AKYSGFRKYGHGPKPSLRVLAKEVLGIEIHQGQHSSVEDARVAMLL---FRKEKH 372
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 29/203 (14%)
Query: 106 PVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQP 165
P P K SG + K VA+DCEMVG G G + AR +V NV++ Y++P
Sbjct: 97 PAPGKASGPLPSK-------CVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRP 149
Query: 166 QLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL 225
++P+ +YR +G+T + ++ A+P + + +IL++L K +++VGH L
Sbjct: 150 EMPIADYRTRWSGITRQHMRKAVPFQVAQKEILKLL--------------KGKVVVGHAL 195
Query: 226 EHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSH-----SLKYLTRTYLGYDIQSGV--HD 278
+D +L+ +P RDT Y P + H SLK L L IQ G H
Sbjct: 196 HNDFQALKYVHPRSQTRDTT-YVPNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHS 254
Query: 279 PYEDCVSVMRLYKRFRRQDHQVE 301
ED + M LY+ Q Q E
Sbjct: 255 SVEDATTAMELYRLVEVQWEQQE 277
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 20/173 (11%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
K VA+DCEMVG G G + AR +V+ + +V++ Y+ P + +YR +G+ ++ +
Sbjct: 178 KMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHM 237
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
NA P K + +IL+IL TG +++VGH + +D +L+ +P + RDT
Sbjct: 238 VNATPFKIARGQILKIL-----TG---------KIVVGHAIHNDFKALQYFHPKSLTRDT 283
Query: 245 AKYRPLMK----TNLVSHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 291
+ PL + + SLK+LT+ L DIQ G H ED + M LYK
Sbjct: 284 SHIPPLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYK 336
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 22/174 (12%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
K VA+DCEMVG G G + AR +V+ + +V++ Y++P + +YR +G+ + +
Sbjct: 194 KMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCHM 253
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
NA P K + +IL+IL+ +++VGH + +D +L+ +P + RDT
Sbjct: 254 VNATPFKTARSQILKILS--------------GKVVVGHAIHNDYKALQYFHPKSLTRDT 299
Query: 245 AKYRPLMKTNL-----VSHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 291
++ PL+ V+ SLK+LT+ L DIQ+G+ H ED + + LYK
Sbjct: 300 SQI-PLLNRKADCPENVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLELYK 352
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 22/174 (12%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
K VA+DCEMVG G G + AR +V+ D +V++ Y+ P + +YR +G+ ++ +
Sbjct: 174 KMVAIDCEMVGTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQHM 233
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
NA P K +++IL+IL +++VGH + +D +L+ +P + RDT
Sbjct: 234 VNATPFKIARNQILKIL--------------AGKIVVGHAIHNDFKALQYIHPKSLTRDT 279
Query: 245 AKYRPLMKTNL-----VSHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 291
+ + PL+ + SLK LT+ L DIQ+G H ED + M LYK
Sbjct: 280 S-HIPLLNRKADCPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMELYK 332
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 22/174 (12%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
K VA+DCEMVG G G + AR +V+ + +V++ YV P + NYR +G+ + +
Sbjct: 193 KMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCHM 252
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
NA P K + +IL+IL+ ++++GH + +D +L+ +P + RDT
Sbjct: 253 VNATPFKTARSQILKILS--------------GKVVIGHAIHNDYKALQYFHPKSLTRDT 298
Query: 245 AKYRPLMKTNL-----VSHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 291
++ PL+ V+ SLK+LT+ L DIQ G H ED + M LYK
Sbjct: 299 SRI-PLLNRKADCPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMELYK 351
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 38/233 (16%)
Query: 123 GP-KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTE 181
GP K VA+DCEMVG G G + AR +V +V++ Y++P++P+ +YR +G+T
Sbjct: 101 GPSKYVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITR 160
Query: 182 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHML 241
+ + A+P + + +IL++L K +++VGH L +D +L+ +P +
Sbjct: 161 QHMHKAIPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPGSQI 206
Query: 242 RDTAKYRPLMKTNLVSH---------SLKYLTRTYLGYDIQSG--VHDPYEDCVSVMRLY 290
RDT Y P NL+S SLK L L IQ G H ED ++ M LY
Sbjct: 207 RDTT-YVP----NLLSQPSSLTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMELY 261
Query: 291 KRFRRQ-DHQVEEIG-----NQNTTGSFDSYKYKELEKMSPNELYQISKSDYR 337
+ Q + QV ++ S D +Y + ++ P +L Q ++ D R
Sbjct: 262 QLVEVQWEQQVASTAKAHPEDRGPDSSTDVEQYMD-DQYWPEDLAQSTRGDTR 313
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 96/203 (47%), Gaps = 29/203 (14%)
Query: 106 PVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQP 165
P P K SG + K VA+DCEMVG G G + AR +V +V++ Y++P
Sbjct: 97 PAPGKASGPLPSK-------CVAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDKYIRP 149
Query: 166 QLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL 225
++P+ +YR +G+T + + A+P + + +IL++L K +++VGH L
Sbjct: 150 EMPIVDYRTRWSGITRQHMCKAIPFQVAQKEILKLL--------------KGKVVVGHAL 195
Query: 226 EHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSH-----SLKYLTRTYLGYDIQSGV--HD 278
+D +L+ +P RDT Y P + H SLK L L IQ G H
Sbjct: 196 HNDFQALKYVHPRSQTRDTT-YVPNFLSEPSLHIRARVSLKDLALQLLHKKIQVGQHGHS 254
Query: 279 PYEDCVSVMRLYKRFRRQDHQVE 301
ED + M LY+ Q Q E
Sbjct: 255 SVEDATTAMELYRLVEVQWEQQE 277
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 110/240 (45%), Gaps = 41/240 (17%)
Query: 80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGA--------IDEKRTCRGP-KAVAMD 130
G LC+ SPS + EA P SG+ + + GP K VA+D
Sbjct: 56 GPGLCL--LPSPSQMPAVTEASDSRRQRPKARSGSNGLCSKKSVPREAPRPGPIKCVAID 113
Query: 131 CEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPL 190
CEMVG G G + AR +V +V++ Y++P++P+ +YR +G+T + + A+P
Sbjct: 114 CEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMHKAIPF 173
Query: 191 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPL 250
+ + +IL++L K +++VGH L +D +L+ +P RDT Y P
Sbjct: 174 QVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPRSQTRDTT-YVP- 217
Query: 251 MKTNLVSH---------SLKYLTRTYLGYDIQSG--VHDPYEDCVSVMRLYKRFRRQDHQ 299
NL+S SLK L L IQ G H ED ++ M LY+ Q Q
Sbjct: 218 ---NLLSQPSSLIRTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMELYQLVEVQWEQ 274
>sp|Q6CE69|REXO4_YARLI RNA exonuclease 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX4 PE=3 SV=1
Length = 291
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 121 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLT 180
C K +A+DCE VG G NG + ARV +V+ +V+ YV+P VT++R V+G+T
Sbjct: 128 CAPGKFIALDCEFVGVGPNGARSILARVSIVNYYGHVLMDEYVKPIERVTDWRTWVSGVT 187
Query: 181 EEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM 240
+ N + E ++++ +LN R L+GH L +DL L +++P
Sbjct: 188 PAMVANGISFSEAQERVKRLLN--------------GRTLIGHALINDLAVLGLDHPRAD 233
Query: 241 LRDTAKYRPLMKT--NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
+RDT K + KT + SLK++ + + +IQ G H D + M L++ ++++
Sbjct: 234 IRDTQKPQ-YFKTVCGCKTPSLKHVMKECVDLNIQQGEHSSVIDAQAAMLLFRCYKKE 290
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 29/180 (16%)
Query: 118 KRTCRGPKAVAMDCEMV--GGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYE 175
K+ VA+DCEMV G+ G RV +VD D VI +V+P PV +YR +
Sbjct: 132 KKVMESTNMVAVDCEMVLCEDGTEG----LVRVGVVDRDLKVILDEFVKPNKPVVDYRTD 187
Query: 176 VTGLTEEDIKNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM 234
+TG+T EDI+NA + + ++++ + L+ G +LVGH L DL+ L++
Sbjct: 188 ITGITAEDIENASLSVVDIQETLQPFLSTG-------------TILVGHSLNRDLEVLKI 234
Query: 235 NYPDHMLRDTA---KYRPLMKTNLVSHSLKYLTRTYLGYDI-QSGV-HDPYEDCVSVMRL 289
++P + DTA KY K L SL L ++ LGY++ ++GV HD D + M+L
Sbjct: 235 DHPKVI--DTALVFKYPNTRK--LRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKL 290
>sp|Q96AZ6|ISG20_HUMAN Interferon-stimulated gene 20 kDa protein OS=Homo sapiens GN=ISG20
PE=1 SV=2
Length = 181
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 21/173 (12%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
+ VAMDCEMVG G + L AR LV+ V++ +++P+ +T+YR V+G+T + +
Sbjct: 6 EVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM 64
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
A P + +IL++L K +L+VGH L+HD +L+ + + + DT
Sbjct: 65 VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTIYDT 110
Query: 245 AKYRPLMKTNLVSH----SLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 291
+ R L + + H SL+ L+ L IQ+ + H ED + M LY+
Sbjct: 111 STDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQ 163
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 20/171 (11%)
Query: 123 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEE 182
G A+DCEM L R+ LV+ D VI+ V+P +P+ +Y +G+TEE
Sbjct: 222 GSHIFALDCEMCLSEQGLVL---TRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEE 278
Query: 183 DIKNAM--PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM 240
+ L+EV+ +L+I++ ++ +L+GH L++DL +++ +P +
Sbjct: 279 KLTVGAKKTLREVQKDLLKIIS-------------RSDILIGHSLQNDLKVMKLKHP--L 323
Query: 241 LRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 291
+ DTA + SLKYL+ T+L IQ+G HD ED + + L K
Sbjct: 324 VVDTAIIYHHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLELTK 374
>sp|Q66UW5|ISG20_PIG Interferon-stimulated gene 20 kDa protein OS=Sus scrofa GN=Isg20
PE=1 SV=2
Length = 181
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 21/177 (11%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
+ VAMDCEMVG G L AR LV+ V++ ++QP+ +T+YR V+G+T + +
Sbjct: 6 EVVAMDCEMVGMGPRRESGL-ARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHM 64
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
A P + +IL++L K +L+VGH L+HD +L+ + + + DT
Sbjct: 65 VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMNRYTIYDT 110
Query: 245 AKYRPLMKTNLVSH----SLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYKRFRR 295
+ L + + H SL+ L L IQ+ + H ED + M LY+ +R
Sbjct: 111 STDMLLWREAKLDHCRRVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMELYQISQR 167
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2
Length = 631
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 23/172 (13%)
Query: 124 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 183
PK +A+DCEMV NG L++ ARV +VD VI+ +V+P+ PVT+Y + +G+TEE
Sbjct: 274 PKILAIDCEMVRT-ENG-LEI-ARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEK 330
Query: 184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRD 243
++N + +L++ +S + +D+ +L+GH L DL+ L+ +P H++ D
Sbjct: 331 LRN----------VTTVLSDVQSYLKKTVDNNT--VLLGHSLNSDLNCLKFTHP-HII-D 376
Query: 244 TAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG---VHDPYED---CVSVMRL 289
TA + SLK+L +L +IQ HD ED CV +++L
Sbjct: 377 TANIYNHTRGPPSKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLLKL 428
>sp|Q9JL16|ISG20_MOUSE Interferon-stimulated gene 20 kDa protein OS=Mus musculus GN=Isg20
PE=1 SV=1
Length = 300
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 19/154 (12%)
Query: 124 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 183
P+ VAMDCEMVG G L AR +V+ V++ Y++P+ +T+YR +V+G+T +
Sbjct: 5 PEVVAMDCEMVGLGPQRVSGL-ARCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQH 63
Query: 184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRD 243
+ A P E + +IL++L K +L+VGH L+HD ++L+ + + + D
Sbjct: 64 MVRATPFGEARLEILQLL--------------KGKLVVGHDLKHDFNALKEDMSKYTIYD 109
Query: 244 TAKYRPLMKTNLVSH----SLKYLTRTYLGYDIQ 273
T+ R L + + SL+ L + L +IQ
Sbjct: 110 TSTDRLLWHEAKLQYYSRVSLRLLCKRLLHKNIQ 143
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 100/200 (50%), Gaps = 44/200 (22%)
Query: 112 SGAIDEKRTCRGPKA--------VAMDCEMV--GGGSNGTLDLCARVCLVDEDENVIFHT 161
S A D RT G K +A+DCEMV GS + RV VD D VI
Sbjct: 120 SNAEDWVRTGLGKKKMEPTKIEMIAIDCEMVLCEDGSEAVV----RVAAVDRDLKVILDE 175
Query: 162 YVQPQLPVTNYRYEVTGLTEEDIKNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLL 220
+V+P PV +YR +TGLT +D++ A + + ++++K+L ++ E T +L
Sbjct: 176 FVKPNQPVVDYRTFITGLTAQDLEKATISVVDIQEKLLMFIS--EDT-----------IL 222
Query: 221 VGHGLEHDLDSLRMNYPDHMLRDTA---KY------RPLMKTNLVSHSLKYLTRTYLGYD 271
VG L HDL L++++ + DT+ KY RPL L SL YL + LGY+
Sbjct: 223 VGQSLNHDLKVLKVDHARVI--DTSLVFKYNYDGTRRPL---RLKRPSLNYLCKCILGYE 277
Query: 272 IQ-SGV-HDPYEDCVSVMRL 289
+Q GV H+ D + M+L
Sbjct: 278 VQKEGVPHNCVHDAEAAMKL 297
>sp|Q9P7H2|REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex3 PE=3 SV=1
Length = 540
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 93/163 (57%), Gaps = 19/163 (11%)
Query: 128 AMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTE-EDIKN 186
A+DCE+ +NG ++L AR+ +V + E++I +++P+ + + +G+ + +++++
Sbjct: 384 ALDCELCYT-TNG-MEL-ARLTVVAK-ESIIMDVFIKPKGKILSLNTRFSGIHDAKELES 439
Query: 187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 246
+ + ++ KI E+ N K +L+GHGLE+DL+++R+ + + DTA
Sbjct: 440 GITMDQMYIKIKELGMN------------KNTILIGHGLENDLNAMRLIH--KRVIDTAL 485
Query: 247 YRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRL 289
+ +SLKYLT+ YLG IQ+ HD ED VS ++L
Sbjct: 486 LFTHARGPPFRYSLKYLTKKYLGTTIQTSTHDSEEDAVSALQL 528
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 119 RTCRGPKAVAMDCEMVG--GGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEV 176
+ + + +++DCEMV GS + RV VD D V+ +V+P PV +Y+ ++
Sbjct: 138 KVIKSTRMLSIDCEMVTCEDGSQALV----RVGAVDRDLKVVLDKFVKPDKPVIDYKTDI 193
Query: 177 TGLTEEDIKNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN 235
TG+T ED++ A + + +++ K+ L+ G +LVGHGL +DL LR++
Sbjct: 194 TGVTAEDLERATLSVADIQKKLRRFLSVG-------------TILVGHGLHNDLQVLRID 240
Query: 236 YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ--SGVHDPYEDCVSVMRL 289
+ ++ + + + SL L ++ LG +++ H+ D + M+L
Sbjct: 241 HA-RVIDTSYVFEFVDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKL 295
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 21/181 (11%)
Query: 124 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 183
P A+DCEM + L+L RV +VD D V++ T+V+P + +Y +G+TE D
Sbjct: 405 PGIYALDCEMCY--TTHGLEL-TRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEAD 461
Query: 184 I-KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 242
+ K ++ L +V+ +L + +L+GH LE DL +L++ + +
Sbjct: 462 VAKTSITLPQVQAILLSFFS-------------AQTILIGHSLESDLLALKLIH--STVL 506
Query: 243 DTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYKRFRRQDHQV 300
DTA P SL+ L YLG IQ H+ ED + ++L RQ Q+
Sbjct: 507 DTAVLFPHYLGFPYKRSLRNLAADYLGQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQI 566
Query: 301 E 301
+
Sbjct: 567 Q 567
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 124 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 183
P A+DCEM + L+L RV +VD D V++ T+V+P + +Y +G+TE D
Sbjct: 499 PGIYALDCEMCY--TTHGLEL-TRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEAD 555
Query: 184 I-KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 242
+ K ++ L +V+ +L + +L+GH LE DL +L++ + +
Sbjct: 556 VAKTSITLPQVQAILLSFFS-------------AQTILIGHSLESDLLALKLIH--STVV 600
Query: 243 DTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYKRFRRQDHQV 300
DTA P SL+ L YL IQ H+ ED + ++L RQ Q+
Sbjct: 601 DTAVLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVRQRAQI 660
Query: 301 E 301
+
Sbjct: 661 Q 661
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 124 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 183
P A+DCEM + L+L RV +VD D V++ T+V+P + +Y +G+TE D
Sbjct: 407 PGIYALDCEMCY--TTHGLEL-TRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEAD 463
Query: 184 I-KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 242
+ K ++ L +V+ +L + +L+GH LE DL +L++ + +
Sbjct: 464 VAKTSITLPQVQAILLSFFS-------------AQTILIGHSLESDLLALKLIH--STVV 508
Query: 243 DTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYKRFRRQDHQV 300
DTA P SL+ L YL IQ H+ ED + ++L RQ Q+
Sbjct: 509 DTAVLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQI 568
Query: 301 E 301
+
Sbjct: 569 Q 569
>sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX3 PE=3 SV=1
Length = 757
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 104 SAPVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYV 163
SA V + SG+ D+ + + VA+DCEM+ ++ ++LC RV +D V
Sbjct: 576 SARVREQPSGSCDQAGSLQT-SVVAVDCEMLY--TSLGMELC-RVTCIDYHGKKTLDRVV 631
Query: 164 QPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLD-DGKARLLVG 222
+P + +Y +G++ DI + + E +K I + E RL+L K +LVG
Sbjct: 632 RPTGRILDYNTRFSGIS--DINEPI-ITESGEKGDSI--SFEEAHRLILKLINKQTILVG 686
Query: 223 HGLEHDLDSLRMNYPDHMLRDTA----KYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHD 278
HGLE+DL ++R+ + D ++ DT+ + P KT L + +LKYL RT IQ+G HD
Sbjct: 687 HGLENDLIAMRLIH-DRII-DTSILYPDFNPRYKTALKTLALKYLKRT-----IQTGEHD 739
Query: 279 PYEDCVSVMRLYK 291
ED ++ + + K
Sbjct: 740 SMEDALAALDVVK 752
>sp|Q6C462|PAN2_YARLI PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PAN2
PE=3 SV=2
Length = 1008
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 143 DLC-ARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL 201
+LC ARV L++ED + + Y+ + +Y +G+ D+ ++ K ++
Sbjct: 836 NLCLARVTLLNEDGHPFINDYIAINEHIVDYLTAFSGIEPGDLDPSISRKP-------LV 888
Query: 202 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK--YRPLMKTNLVSHS 259
+ S RL L + VGHGL +D ++ M P + DT Y P + L S
Sbjct: 889 SLPTSYRRLWLLLNLGCVFVGHGLANDFRTINMQVPPEQVIDTVDLYYIPSERRKL---S 945
Query: 260 LKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI 303
L++L LG +QSG HD ED + + LYK++ QD EE
Sbjct: 946 LRFLAWCVLGKKVQSGNHDSTEDSHTALLLYKKY--QDCAPEEF 987
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2
SV=2
Length = 567
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 23/170 (13%)
Query: 124 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 183
P+ VA+DCEM L RV LVD V+ V P P+T+Y +G+T
Sbjct: 213 PEIVALDCEMCITKEGLEL---TRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITAVM 269
Query: 184 IKNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 242
++ LK+++++ L+++ K +LVGH LE+DL SL++++ +++
Sbjct: 270 MEGVTTTLKDIQEEFLKLV-------------FKETILVGHSLENDLLSLKISH--NLVI 314
Query: 243 DTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ---SGVHDPYEDCVSVMRL 289
DTA L+ L + +L +IQ SG HD ED + M L
Sbjct: 315 DTAVLYKHPHGRSYKTKLRILAKKFLAREIQESESG-HDSAEDAKAAMDL 363
>sp|Q9SN09|SDN4_ARATH Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana
GN=SDN4 PE=3 SV=1
Length = 322
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 42/164 (25%)
Query: 125 KAVAMDCEMV--GGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEE 182
+ +A+DCEMV G+ G + RV VD + VI +V+P PV +YR +TG+T E
Sbjct: 74 QMLALDCEMVLCEDGTEGVV----RVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAE 129
Query: 183 DIKNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD-HM 240
D++ A + L ++++K+ L+ G +L+ H + D SL YP+
Sbjct: 130 DVQKATLSLVDIQEKLRPFLSAGA-------------ILIDHPIVID-TSLVFKYPNSRK 175
Query: 241 LRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------VHD 278
LR RP SL L + LGY++Q VHD
Sbjct: 176 LR-----RP---------SLNTLCMSVLGYEVQKAGVSHHCVHD 205
>sp|P53010|PAN2_YEAST PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAN2 PE=1 SV=1
Length = 1115
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 219 LLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHD 278
+ VGHGL +D + +N P + +RDTA Y K L SL+YL LG +IQ G HD
Sbjct: 1011 VFVGHGLNNDFKHININVPRNQIRDTAIYFLQGKRYL---SLRYLAYVLLGMNIQEGNHD 1067
Query: 279 PYEDCVSVMRLYKRF 293
ED + + LYK++
Sbjct: 1068 SIEDAHTALILYKKY 1082
>sp|A4RF51|PAN2_MAGO7 PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAN2 PE=3 SV=3
Length = 1150
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 20/139 (14%)
Query: 162 YVQPQLPVTNYRYEVTGLTEEDIK------NAMPLKEVKDKILEILNNGESTGRLMLDDG 215
Y+ + P+ NY E +GLTE D+ N +PLK K+ +LN G
Sbjct: 963 YINIKEPIVNYFTEFSGLTETDLDPKTSRHNLVPLKLAFKKLWLLLNLG----------- 1011
Query: 216 KARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG 275
+ VGHGL D + + P + DT + ++ SL +L ++ L +IQ
Sbjct: 1012 --CIFVGHGLRSDFRVINLQVPREQVHDTQELF-WVEAQRRKLSLAFLAKSVLNLEIQGH 1068
Query: 276 VHDPYEDCVSVMRLYKRFR 294
+HD ED + LY +++
Sbjct: 1069 MHDSIEDANTAQLLYWKYK 1087
>sp|Q5APK0|PAN2_CANAL PAB-dependent poly(A)-specific ribonuclease subunit PAN2 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAN2 PE=3
SV=1
Length = 1190
Score = 55.8 bits (133), Expect = 4e-07, Method: Composition-based stats.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 32/187 (17%)
Query: 146 ARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI-------KNAMPLKEVKDKIL 198
AR+ ++ E+ Y+ + +Y +G+ D+ +N + L+ K+
Sbjct: 1021 ARISVLRENGIPFIDDYIVHTSDIYDYLTNFSGIEPNDLNLTLSNRENLVTLQTAYRKLW 1080
Query: 199 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTA--KYRPLMKTNLV 256
+LN G + VGHGL +D ++ + P+ +RDTA Y+ K L
Sbjct: 1081 LLLNLGV-------------IFVGHGLYNDFRTINLQVPERQIRDTAVIYYKSDFKRQL- 1126
Query: 257 SHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYK 316
SLK+L L +QSG HD ED + + LYK++ + + N+ S +Y
Sbjct: 1127 --SLKFLAYVMLKEKVQSGNHDSIEDANTALLLYKKY-------QNLYNKEDFESILNYI 1177
Query: 317 YKELEKM 323
Y E +++
Sbjct: 1178 YSEGQQL 1184
>sp|Q750A5|REXO3_ASHGO RNA exonuclease 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX3 PE=3 SV=1
Length = 382
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 25/192 (13%)
Query: 101 CSLSAPVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDEN-VIF 159
++S +PF+ + ++ + +A+DCEM L R+ +V+ N V+F
Sbjct: 203 AAMSKLLPFRNTRGVEGE-----TNVLALDCEMAYTSCGYEL---IRLTVVEFWTNAVLF 254
Query: 160 HTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARL 219
VQP + + + +G+ E D A +E ++ L E++ +
Sbjct: 255 DEIVQPLGEIIDLNTQFSGVHEIDRAVAKTFEEAREVFLSPAMINENS-----------I 303
Query: 220 LVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDP 279
L+GHGLE+DL+ LR+ + D ++ DTA P K SL+ L L IQ+G HD
Sbjct: 304 LIGHGLENDLNVLRIIH-DKII-DTAILYPNGK---FKSSLRNLAFQELSRRIQTGEHDS 358
Query: 280 YEDCVSVMRLYK 291
ED ++ M + K
Sbjct: 359 SEDAIAAMDVVK 370
>sp|Q7TT28|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1
Length = 1213
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 23/178 (12%)
Query: 128 AMDCEMVGGGSNGTLDL-CARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED-IK 185
A+DCEM S T L RV +VD D V++ T+V+P V +Y +G+TE D +
Sbjct: 1054 ALDCEM----SYTTYGLELTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVD 1109
Query: 186 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTA 245
++ L++V+ +L + + +L+GH LE DL +L++ + + DT+
Sbjct: 1110 TSITLRDVQAVLLSMFSADT-------------ILIGHSLESDLLALKVIH--GTVVDTS 1154
Query: 246 KYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYKRFRRQDHQVE 301
P SL+ L YL IQ V H ED + M L R+D + +
Sbjct: 1155 VLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIREDAKTK 1212
>sp|A3LRV8|PAN2_PICST PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054
/ NBRC 10063 / NRRL Y-11545) GN=PAN2 PE=3 SV=2
Length = 1183
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 153 EDENVIF-HTYVQPQLPVTNYRYEVTGLTEEDI------KNAMPLKEVKDKILEILNNGE 205
E + V F YV + +Y +G+ D+ KN + L+ V K+ +LN G
Sbjct: 1021 EKQGVAFIDDYVVHTGEIYDYLTSFSGIEPGDLDPINSEKNLVTLQTVYRKLWLLLNLGV 1080
Query: 206 STGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK--YRPLMKTNLVSHSLKYL 263
+ VGHGL +D + + P + +RDTA Y+ K L SLK+L
Sbjct: 1081 -------------VFVGHGLYNDFRGINLQVPQNQIRDTADFYYKSDFKRQL---SLKFL 1124
Query: 264 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRF 293
L +Q+G HD ED + + LYK++
Sbjct: 1125 AYVLLKEKVQTGNHDSIEDAYTALLLYKKY 1154
>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1
PE=2 SV=2
Length = 1647
Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats.
Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 36/203 (17%)
Query: 94 LIKHKEACSLSAPVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDE 153
L K + + +S PVP +++R+ R A+DCEMV + L AR+ +VD
Sbjct: 1454 LFKKELSTFVSTPVPVP-----NDQRSTR---VYALDCEMVYTIAGPAL---ARLTMVDM 1502
Query: 154 DENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAM-PLKEVKDKILEILNNGESTGRLML 212
N + +V+P V + E +GLT E I +A LK K+ + +N
Sbjct: 1503 QRNRVLDVFVKPPTDVLDPNTEFSGLTMEQINSAPDTLKTCHQKLFKYVN---------- 1552
Query: 213 DDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTA-KYRPLMKTNLVSHSLKYLTRTYLGYD 271
+L+GH LE DL ++R+ + + + DTA +R T + +LK L+ L +
Sbjct: 1553 ---ADTILIGHSLESDLKAMRVVHKNVI--DTAILFRSTRDTKV---ALKVLSAKLLHKN 1604
Query: 272 IQSGV-----HDPYEDCVSVMRL 289
IQ HD ED ++ + L
Sbjct: 1605 IQGDNEDAIGHDSMEDALTCVDL 1627
>sp|Q6FS70|PAN2_CANGA PAB-dependent poly(A)-specific ribonuclease subunit PAN2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAN2 PE=3 SV=1
Length = 1093
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 220 LVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDP 279
+GHGL++D + ++ P +RDTA Y K L SL+YL L ++Q G HD
Sbjct: 992 FIGHGLQNDFKHINISVPKEQIRDTAVYFLQGKRYL---SLRYLAYVLLDINVQEGNHDS 1048
Query: 280 YEDCVSVMRLYKRF 293
ED + + LYK++
Sbjct: 1049 IEDAYTALVLYKKY 1062
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,784,530
Number of Sequences: 539616
Number of extensions: 5741247
Number of successful extensions: 21284
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 910
Number of HSP's that attempted gapping in prelim test: 15769
Number of HSP's gapped (non-prelim): 4810
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)