BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019381
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/316 (65%), Positives = 256/316 (81%)
Query: 27 PVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVP 86
P+E+LQ +GI DVKKL+++GL T E+VAY+PRK+LL+IKGISEAK DK++ A++LVP
Sbjct: 3 PIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVP 62
Query: 87 LGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146
+GF +A H +R E+I +T+GS+ LD +L GGVETGSITE++GEFR+GK+QLCHTL VT
Sbjct: 63 MGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 122
Query: 147 CQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRL 206
CQ+PLD GGGEGK +YID EGTFRP RL+ IA R+GL+ D L NVAYARAYN DHQ RL
Sbjct: 123 CQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRL 182
Query: 207 LLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAV 266
L AA MM E+RF+L++VDS ALYRTDFSGRGELSARQMHLAKF+R+LQ+LAD+FGVAV
Sbjct: 183 LDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV 242
Query: 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA 326
V+TNQVVAQVDG F KP GGNIMAH+STTRL +KG+G +R+CKV+ SPCL EA
Sbjct: 243 VVTNQVVAQVDGGMAFNPDPKKPTGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEA 302
Query: 327 EARFQISAQGVADVKD 342
E F I GV D ++
Sbjct: 303 ECVFAIYEDGVGDPRE 318
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/316 (65%), Positives = 257/316 (81%)
Query: 27 PVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVP 86
P+E+LQ +GI DVKKL+++GL T E+VAY+PRK+LL+IKGISEAK DK++ A++LVP
Sbjct: 82 PIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVP 141
Query: 87 LGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146
+GF +A H +R E+I +T+GS+ LD +L GGVETGSITE++GEFR+GK+QLCHTL VT
Sbjct: 142 MGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201
Query: 147 CQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRL 206
CQ+PLD GGGEGK +YID EGTFRP RL+ IA R+GL+ D L NVAYARAYN DHQ RL
Sbjct: 202 CQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRL 261
Query: 207 LLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAV 266
L AA MM E+RF+L++VDS ALYRTDFSGRGELSARQMHLAKF+R+LQ+LAD+FGVAV
Sbjct: 262 LDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV 321
Query: 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA 326
V+TNQVVAQVDG F KPIGGNIMA++STTRL +KG+G +R+CKV+ SPCL EA
Sbjct: 322 VVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGKGCQRLCKVVDSPCLPEA 381
Query: 327 EARFQISAQGVADVKD 342
E F I GV D ++
Sbjct: 382 ECVFAIYEDGVGDPRE 397
>pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
Length = 243
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/242 (76%), Positives = 216/242 (89%)
Query: 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKA 160
EIIQIT+GS+ELDK+L+GG+ETGSITE +GEFR+GKTQ+CHTL VTCQLP+D+GGGEGKA
Sbjct: 2 EIIQITTGSKELDKLLQGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 61
Query: 161 MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFA 220
YID EGTFRP+RLL +A+RYGL+G+DVL+NVAYARA+NTDHQ++LL +A++ VE+R+A
Sbjct: 62 XYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAXXVESRYA 121
Query: 221 LMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSA 280
L+IVDSATALYRTD+SGRGELSARQ HLA+FLR L +LADEFGVAVVITNQVVAQVDG+A
Sbjct: 122 LLIVDSATALYRTDYSGRGELSARQXHLARFLRXLLRLADEFGVAVVITNQVVAQVDGAA 181
Query: 281 IFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVADV 340
FA KPIGGNI+AHASTTRL LRKGRGE RICK+ SPCL EAEA F I+A GV D
Sbjct: 182 XFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAXFAINADGVGDA 241
Query: 341 KD 342
KD
Sbjct: 242 KD 243
>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 325 bits (832), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 163/317 (51%), Positives = 218/317 (68%), Gaps = 2/317 (0%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
++ LQ GI D+KKLK G+CT++ + + R+ L +KG+SEAKVDKI EAA+KL+
Sbjct: 27 IDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEP 86
Query: 88 GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTC 147
GF +A + +R + IT+GS+E DK+L GG+E+ +ITE +GEFR+GKTQL HTLCVT
Sbjct: 87 GFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146
Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLL 207
QLP G GK ++ID E TFRP RL IADR+ ++ VL+NV YARAY ++HQ LL
Sbjct: 147 QLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELL 206
Query: 208 LEAASMMVETR--FALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVA 265
A+ E F L+I+DS AL+R DFSGRGEL+ RQ LA+ L LQK+++E+ VA
Sbjct: 207 DYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVA 266
Query: 266 VVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 325
V +TNQ+ A + F KPIGG+I+AHASTTR++LRKGRGE RI K+ SP + E
Sbjct: 267 VFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPE 326
Query: 326 AEARFQISAQGVADVKD 342
EA F I+A G+ D K+
Sbjct: 327 NEATFAITAGGIGDAKE 343
>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 325 bits (832), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 163/317 (51%), Positives = 218/317 (68%), Gaps = 2/317 (0%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
++ LQ GI D+KKLK G+CT++ + + R+ L +KG+SEAKVDKI EAA+KL+
Sbjct: 27 IDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEP 86
Query: 88 GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTC 147
GF +A + +R + IT+GS+E DK+L GG+E+ +ITE +GEFR+GKTQL HTLCVT
Sbjct: 87 GFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146
Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLL 207
QLP G GK ++ID E TFRP RL IADR+ ++ VL+NV YARAY ++HQ LL
Sbjct: 147 QLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELL 206
Query: 208 LEAASMMVETR--FALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVA 265
A+ E F L+I+DS AL+R DFSGRGEL+ RQ LA+ L LQK+++E+ VA
Sbjct: 207 DYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVA 266
Query: 266 VVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 325
V +TNQ+ A + F KPIGG+I+AHASTTR++LRKGRGE RI K+ SP + E
Sbjct: 267 VFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPE 326
Query: 326 AEARFQISAQGVADVKD 342
EA F I+A G+ D K+
Sbjct: 327 NEATFAITAGGIGDAKE 343
>pdb|1PZN|A Chain A, Rad51 (Rada)
pdb|1PZN|B Chain B, Rad51 (Rada)
pdb|1PZN|C Chain C, Rad51 (Rada)
pdb|1PZN|D Chain D, Rad51 (Rada)
pdb|1PZN|E Chain E, Rad51 (Rada)
pdb|1PZN|F Chain F, Rad51 (Rada)
pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 205/311 (65%), Gaps = 9/311 (2%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLG-FTSAT 93
G+ +KL++AG T+E++A + EL ++ GISE KII+AA K LG F A
Sbjct: 42 GVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFXRAD 101
Query: 94 QLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153
+ +R I +I++GS+ LDK+L GG+ET +ITE++GEF SGKTQL HTL V QLP ++
Sbjct: 102 EYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVXVQLPPEE 161
Query: 154 GGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASM 213
GG G ++ID E TFRP+R+ +IA GL+ +VL+++ ARA+N++HQ L+ +A
Sbjct: 162 GGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLLVQQAEDK 221
Query: 214 MVE-----TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVI 268
+ E L+IVDS T+ +R+++ GRG L+ RQ LAK L L +LA+ + +AV +
Sbjct: 222 IKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV 281
Query: 269 TNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEA 328
TNQV A+ D F G +PIGG+I+AH++T R+ LRKG+G +RI ++I +P L E EA
Sbjct: 282 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEA 338
Query: 329 RFQISAQGVAD 339
F I+ +G+ D
Sbjct: 339 VFSITEKGIED 349
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 193/309 (62%), Gaps = 4/309 (1%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
GI+ + KL +AG ++E++A + ++L GI + KII+ A + + F +A +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
+ +R+ + +I++GS+ LD +L GG+ET ++TE +GEF SGKTQLCH L V QLP ++G
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G GKA+YID EGTFR +R+ +A GL+ +V+ N+ Y RA NTDHQ ++ + ++
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 215 V-ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273
+ L++VDS T+ +R ++ GR L+ RQ L K L L +LA+ + +AV+ITNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQIS 333
A+ D +F G +GG+ + H R+ L+K RG RI +V+ +P L E E F ++
Sbjct: 259 ARPD---MFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALT 315
Query: 334 AQGVADVKD 342
+G+ D ++
Sbjct: 316 EEGIRDAEE 324
>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp
pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 190/316 (60%), Gaps = 14/316 (4%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
G+ +KL +AG +A + EL I+GISE K+I A L LGF S
Sbjct: 10 GVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGID 69
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLP---- 150
L QR + ++++ S ELD +L GG+E+ S+TE G F SGKTQ+ H CV Q P
Sbjct: 70 LLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLF 129
Query: 151 -----LDQGG-GEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQS 204
+ +G + KA+YID EGTFRP+R++Q+A+ G++G VL+N ARAYN+D Q
Sbjct: 130 YDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQM 189
Query: 205 RLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 263
+ ++ E L+++DS T+ +R +++GRG+L+ RQ L + + +L KLAD F
Sbjct: 190 LFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFN 249
Query: 264 VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCL 323
V++TNQV A+ D F G + IGG+I+ HA+T R +RKG+G++R+ K+ SP L
Sbjct: 250 CVVLVTNQVSAKPDA---FFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHL 306
Query: 324 AEAEARFQISAQGVAD 339
+AEA F+I+ +G+ D
Sbjct: 307 PDAEAIFRITEKGIQD 322
>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 190/316 (60%), Gaps = 14/316 (4%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
G+ +KL +AG +A + EL I+GISE K+I A L LGF S
Sbjct: 7 GVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGID 66
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLP---- 150
L QR + ++++ S ELD +L GG+E+ S+TE G F SGKTQ+ H CV Q P
Sbjct: 67 LLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLF 126
Query: 151 -----LDQGG-GEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQS 204
+ +G + KA+YID EGTFRP+R++Q+A+ G++G VL+N ARAYN+D Q
Sbjct: 127 YDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQM 186
Query: 205 RLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 263
+ ++ E L+++DS T+ +R +++GRG+L+ RQ L + + +L KLAD F
Sbjct: 187 LFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFN 246
Query: 264 VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCL 323
V++TNQV A+ D F G + IGG+I+ HA+T R +RKG+G++R+ K+ SP L
Sbjct: 247 CVVLVTNQVSAKPDA---FFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYKSPHL 303
Query: 324 AEAEARFQISAQGVAD 339
+AEA F+I+ +G+ D
Sbjct: 304 PDAEAIFRITEKGIQD 319
>pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium
pdb|2F1I|A Chain A, Recombinase In Complex With Amp-pnp
pdb|2F1J|A Chain A, Recombinase In Complex With Adp
Length = 322
Score = 226 bits (577), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 190/316 (60%), Gaps = 14/316 (4%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
G+ +KL +AG +A + EL I+GISE K+I A L LGF S
Sbjct: 10 GVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGID 69
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLP---- 150
L QR + ++++ S ELD +L GG+E+ S+TE G F SGKTQ+ H CV Q P
Sbjct: 70 LLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLF 129
Query: 151 -----LDQGG-GEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQS 204
+ +G + KA+YID +GTFRP+R++Q+A+ G++G VL+N ARAYN+D Q
Sbjct: 130 YDEEAVSKGEVAQPKAVYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQM 189
Query: 205 RLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 263
+ ++ E L+++DS T+ +R +++GRG+L+ RQ L + + +L KLAD F
Sbjct: 190 LFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFN 249
Query: 264 VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCL 323
V++TNQV A+ D F G + IGG+I+ HA+T R +RKG+G++R+ K+ SP L
Sbjct: 250 CVVLVTNQVSAKPDA---FFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHL 306
Query: 324 AEAEARFQISAQGVAD 339
+AEA F+I+ +G+ D
Sbjct: 307 PDAEAIFRITEKGIQD 322
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 187/309 (60%), Gaps = 4/309 (1%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
GI+ + KL +AG ++E++A + ++L GI + KII+ A + + F +A +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
+ +R + +I++GS+ LD +L GG+ET + TE +GEF SGKTQLCH L V QLP ++G
Sbjct: 79 VKKERXNVKKISTGSQALDGLLAGGIETRTXTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G GKA+YID EGTFR +R+ A GL+ +V N+ Y RA NTDHQ ++ + ++
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 215 V-ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273
+ L++VDS T+ +R ++ GR L+ RQ L K L L +LA+ + +AV+ITNQV
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVX 258
Query: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQIS 333
A+ D F G +GG+ + H R+ L+K RG RI +V+ +P L E E F ++
Sbjct: 259 ARPD---XFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALT 315
Query: 334 AQGVADVKD 342
+G+ D ++
Sbjct: 316 EEGIRDAEE 324
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 20/243 (8%)
Query: 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAM 161
I +I++GS+ LDK+L GG+ET +ITE++GEF SGKTQL HTL V QLP ++GG G M
Sbjct: 4 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVM 63
Query: 162 YIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVE----- 216
+ID E TFRP+R+ +IA GL+ +VL+++AYARA+N++HQ L+ +A M+ E
Sbjct: 64 WIDTENTFRPERIREIAQNRGLDPDEVLKHIAYARAFNSNHQMLLVQQAEDMIKELLNTD 123
Query: 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276
L+IVDS T+ +R+++ GRG L+ RQ LAK L L +LA+ + +AV +TNQV A
Sbjct: 124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN- 182
Query: 277 DGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQG 336
GG+I+AH++T R+ LRKG+G +RI ++I +P L E EA F I+ +G
Sbjct: 183 --------------GGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKG 228
Query: 337 VAD 339
+ D
Sbjct: 229 IED 231
>pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp
pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Potassium Ions
pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Ammonium Ions
Length = 322
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 190/317 (59%), Gaps = 16/317 (5%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
G+ KL + G +A + EL I+GISE K+I AA L LGF S +
Sbjct: 10 GVGPSTADKLIEGGYLDFMKIATATIGELTDIEGISEKAAAKMIMAARDLCDLGFKSGVE 69
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQL----- 149
L QR + ++++GS ELD +L GG+E+ S+TE G F SGKTQ+ H CV Q+
Sbjct: 70 LLKQRQSVWRLSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQMREKIF 129
Query: 150 -----PLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQS 204
+++ KA+YID EGTFRP+R++Q+A+ G++G VL+N ARAYN+D Q
Sbjct: 130 ADLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQ- 188
Query: 205 RLLLEAASMMVE--TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF 262
L E +++ L+I+DS T+ +R +F+GRG+L+ RQ L + + +L KLAD +
Sbjct: 189 MLFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATLNKLADLY 248
Query: 263 GVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPC 322
V++TNQV A+ D + G + IGG+++ HA+T R LRK +G++R+ K+ SP
Sbjct: 249 NCIVLVTNQVAAKPDA---YFGVAEQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPH 305
Query: 323 LAEAEARFQISAQGVAD 339
L ++EA F+I+ +G+ D
Sbjct: 306 LPDSEAVFRITEKGIQD 322
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 160/243 (65%), Gaps = 20/243 (8%)
Query: 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAM 161
I +I++GS+ LDK+L GG+ET +ITE++GEF SGKTQL HTL V QLP ++GG G +
Sbjct: 4 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI 63
Query: 162 YIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVE----- 216
+ID E TFRP+R+ +IA GL+ +VL+++ ARA+N++HQ L+ +A + E
Sbjct: 64 WIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD 123
Query: 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276
L+IVDS T+ +R+++ GRG L+ RQ LAK L L +LA+ + +AV +TNQV A
Sbjct: 124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN- 182
Query: 277 DGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQG 336
GG+I+AH++T R+ LRKG+G +RI ++I +P L E EA F I+ +G
Sbjct: 183 --------------GGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKG 228
Query: 337 VAD 339
+ D
Sbjct: 229 IED 231
>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|B Chain B, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|C Chain C, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|D Chain D, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|E Chain E, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|F Chain F, Hexameric Ring Of Methanococcus Voltae Rada
Length = 266
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/266 (40%), Positives = 167/266 (62%), Gaps = 14/266 (5%)
Query: 85 VPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144
+ LGF S L QR + ++++ S ELD +L GG+E+ S+TE G F SGKTQ+ H C
Sbjct: 4 MDLGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 63
Query: 145 VTCQLP---------LDQGG-GEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAY 194
V Q P + +G + KA+YID EGTFRP+R++Q+A+ G++G VL+N
Sbjct: 64 VNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFV 123
Query: 195 ARAYNTDHQSRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLR 253
ARAYN+D Q + ++ E L+++DS T+ +R +++GRG+L+ RQ L + +
Sbjct: 124 ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMA 183
Query: 254 SLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEER 313
+L KLAD F V++TNQV A+ D F G + IGG+I+ HA+T R +RKG+G++R
Sbjct: 184 TLNKLADLFNCVVLVTNQVSAKPDA---FFGMAEQAIGGHIVGHAATFRFFVRKGKGDKR 240
Query: 314 ICKVISSPCLAEAEARFQISAQGVAD 339
+ K+ SP L +AEA F+I+ +G+ D
Sbjct: 241 VAKLYDSPHLPDAEAIFRITEKGIQD 266
>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
Magnesium
Length = 264
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/264 (40%), Positives = 166/264 (62%), Gaps = 14/264 (5%)
Query: 87 LGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146
+GF S L QR + ++++ S ELD +L GG+E+ S+TE G F SGKTQ+ H CV
Sbjct: 4 MGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 63
Query: 147 CQLP---------LDQGG-GEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYAR 196
Q P + +G + KA+YID EGTFRP+R++Q+A+ G++G VL+N AR
Sbjct: 64 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 123
Query: 197 AYNTDHQSRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSL 255
AYN+D Q + ++ E L+++DS T+ +R +++GRG+L+ RQ L + + +L
Sbjct: 124 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 183
Query: 256 QKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERIC 315
KLAD F V++TNQV A+ D F G + IGG+I+ HA+T R +RKG+G++R+
Sbjct: 184 NKLADLFNCVVLVTNQVSAKPDA---FFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVA 240
Query: 316 KVISSPCLAEAEARFQISAQGVAD 339
K+ SP L +AEA F+I+ +G+ D
Sbjct: 241 KLYDSPHLPDAEAIFRITEKGIQD 264
>pdb|1B22|A Chain A, Rad51 (N-Terminal Domain)
Length = 114
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/94 (63%), Positives = 79/94 (84%)
Query: 24 GPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASK 83
GP P+ +L+ GI A DVKKL++AG TVE+VAY+P+KEL+ IKGISEAK DKI+ A+K
Sbjct: 21 GPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAK 80
Query: 84 LVPLGFTSATQLHAQRLEIIQITSGSRELDKILE 117
LVP+GFT+AT+ H +R EIIQIT+GS+ELDK+L+
Sbjct: 81 LVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQ 114
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 16/169 (9%)
Query: 105 ITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAM-YI 163
+++G++ LD +L GG G +T++YG + SGKT L L G GK + Y+
Sbjct: 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLA----------LQTGLLSGKKVAYV 51
Query: 164 DAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMI 223
D EG F P+RL+Q+A+ GLN + L + Q R ++ + V++ FAL++
Sbjct: 52 DTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRR-VIGSLKKTVDSNFALVV 110
Query: 224 VDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272
VDS TA YR + + G ++ L++ L+ L +A + + V++ NQV
Sbjct: 111 VDSITAHYRAEENRSGLIA----ELSRQLQVLLWIARKHNIPVIVINQV 155
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 41/252 (16%)
Query: 99 RLEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGE 157
R I I +GS LD L GG+ G + EIYG SGKT + Q
Sbjct: 35 RQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAG 88
Query: 158 GKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
G A +IDAE P A + G++ +L +T Q+ LE A M++ +
Sbjct: 89 GVAAFIDAEHALDP----DYAKKLGVDTDSLL-----VSQPDTGEQA---LEIADMLIRS 136
Query: 218 -RFALMIVDSATALY-RTDFSGR-GE----LSARQMHLAKFLRSLQKLADEFGVAVVITN 270
++++DS AL R + G G+ L AR M A LR + + G + N
Sbjct: 137 GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQA--LRKMTGALNNSGTTAIFIN 194
Query: 271 QVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK---------GRGEERICKVISSP 321
Q+ ++ +F P+ GG + ++ R+ +R+ G KV+ +
Sbjct: 195 QLRDKI--GVMFGSPETT-TGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVKNK 251
Query: 322 CLAE-AEARFQI 332
CLA +A F I
Sbjct: 252 CLAPFKQAEFDI 263
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 103/249 (41%), Gaps = 43/249 (17%)
Query: 99 RLEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGE 157
R I I +GS LD L GG+ G + EIYG SGKT + Q
Sbjct: 36 RQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAG 89
Query: 158 GKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
G A +IDAE P + A + G++ +L +T Q+ LE A M+V +
Sbjct: 90 GIAAFIDAEHALDP----EYAKKLGVDTDSLL-----VSQPDTGEQA---LEIADMLVRS 137
Query: 218 -RFALMIVDSATALY-RTDFSGR-GE----LSARQMHLAKFLRSLQKLADEFGVAVVITN 270
++++DS AL R + G G+ L AR M A LR + + G + N
Sbjct: 138 GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQA--LRKMTGALNNSGTTAIFIN 195
Query: 271 QVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK------------GRGEERICKVI 318
Q+ ++ +F P+ GG + ++ RL +R+ R ++ K
Sbjct: 196 QLREKI--GVMFGSPETT-TGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNK 252
Query: 319 SSPCLAEAE 327
SP +AE
Sbjct: 253 VSPPFKQAE 261
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 103/249 (41%), Gaps = 43/249 (17%)
Query: 99 RLEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGE 157
R I I +GS LD L GG+ G + EIYG SGKT + Q
Sbjct: 36 RQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAG 89
Query: 158 GKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
G A +IDAE P + A + G++ +L +T Q+ LE A M+V +
Sbjct: 90 GIAAFIDAEHALDP----EYAKKLGVDTDSLL-----VSQPDTGEQA---LEIADMLVRS 137
Query: 218 -RFALMIVDSATALY-RTDFSGR-GE----LSARQMHLAKFLRSLQKLADEFGVAVVITN 270
++++DS AL R + G G+ L AR M A LR + + G + N
Sbjct: 138 GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQA--LRKMTGALNNSGTTAIFIN 195
Query: 271 QVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK------------GRGEERICKVI 318
++ ++ +F P+ GG + ++ RL +R+ R ++ K
Sbjct: 196 ELREKI--GVMFGSPETT-TGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNK 252
Query: 319 SSPCLAEAE 327
SP +AE
Sbjct: 253 VSPPFKQAE 261
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 102/249 (40%), Gaps = 43/249 (17%)
Query: 99 RLEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGE 157
R I I +GS LD L GG+ G + EIYG SGKT + Q
Sbjct: 36 RQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAG 89
Query: 158 GKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
G A +IDAE P + A + G++ +L +T Q+ LE A M+V +
Sbjct: 90 GIAAFIDAEHALDP----EYAKKLGVDTDSLL-----VSQPDTGEQA---LEIADMLVRS 137
Query: 218 -RFALMIVDSATALY-RTDFSGR-GE----LSARQMHLAKFLRSLQKLADEFGVAVVITN 270
++++DS AL R + G G+ L AR M A LR + + G + N
Sbjct: 138 GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQA--LRKMTGALNNSGTTAIFIN 195
Query: 271 QVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK------------GRGEERICKVI 318
+ ++ +F P+ GG + ++ RL +R+ R ++ K
Sbjct: 196 NLREKI--GVMFGSPETT-TGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNK 252
Query: 319 SSPCLAEAE 327
SP +AE
Sbjct: 253 VSPPFKQAE 261
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 102/249 (40%), Gaps = 43/249 (17%)
Query: 99 RLEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGE 157
R I I +GS LD L GG+ G + EIYG SGKT + Q
Sbjct: 36 RQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAG 89
Query: 158 GKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
G A +IDAE P + A + G++ +L +T Q+ LE A M+V +
Sbjct: 90 GIAAFIDAEHALDP----EYAKKLGVDTDSLL-----VSQPDTGEQA---LEIADMLVRS 137
Query: 218 -RFALMIVDSATALY-RTDFSGR-GE----LSARQMHLAKFLRSLQKLADEFGVAVVITN 270
++++DS AL R + G G+ L AR M A LR + + G + N
Sbjct: 138 GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQA--LRKMTGALNNSGTTAIFIN 195
Query: 271 QVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK------------GRGEERICKVI 318
+ ++ +F P+ GG + ++ RL +R+ R ++ K
Sbjct: 196 ALREKI--GVMFGSPETT-TGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNK 252
Query: 319 SSPCLAEAE 327
SP +AE
Sbjct: 253 VSPPFKQAE 261
>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
Length = 356
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 92/223 (41%), Gaps = 54/223 (24%)
Query: 118 GGVETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQ 176
GG G I EI+G+ SGKT L H + ++ G A +IDAE P
Sbjct: 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG-------GVAAFIDAEHALDP----- 103
Query: 177 IADRYGLNGADVLENVAYARAYNTDHQSRLL---------LEAASMMVETRFA-LMIVDS 226
YA+ D +S L+ LE +V + L++VDS
Sbjct: 104 ----------------VYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDS 147
Query: 227 ATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSA 280
AL R + G G+ L AR M A LR + ++ V+ TNQ+ ++
Sbjct: 148 VAALVPRAEIEGAMGDMQVGLQARLMSQA--LRKIAGSVNKSKAVVIFTNQIRMKI--GV 203
Query: 281 IFAGPQIKPIGGNIMAHASTTRLALRKG----RGEERICKVIS 319
+F P+ GG + +T R+ +R+G G++ I VIS
Sbjct: 204 MFGSPETT-TGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIS 245
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 62
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 63 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 111
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 112 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 169
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 170 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 220
Query: 332 ISAQGVA 338
+ +A
Sbjct: 221 VVKNKIA 227
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 359 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 411
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 412 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 460
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 461 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 518
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 519 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 569
Query: 332 ISAQGVA 338
+ +A
Sbjct: 570 VVKNKIA 576
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 760
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 761 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 809
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 810 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 868 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 918
Query: 332 ISAQGVA 338
+ +A
Sbjct: 919 VVKNKIA 925
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 1058 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 1110
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 1111 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 1159
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 1160 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1217
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 1218 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 1268
Query: 332 ISAQGVA 338
+ +A
Sbjct: 1269 VVKNKIA 1275
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 1407 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 1459
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 1460 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 1508
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 1509 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1566
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 1567 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 1617
Query: 332 ISAQGVA 338
+ +A
Sbjct: 1618 VVKNKIA 1624
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 35/246 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 88
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 89 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 137
Query: 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQV 272
+++VDS AL GE+ M LA + S ++KLA ++ NQ+
Sbjct: 138 AVDVIVVDSVAAL-TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196
Query: 273 VAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQI 332
++ +F P+ GGN + ++ RL +R RI V + +E R ++
Sbjct: 197 RMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVKV 247
Query: 333 SAQGVA 338
+A
Sbjct: 248 VKNKIA 253
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 35/246 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 35 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 87
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 88 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 136
Query: 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQV 272
+++VDS AL GE+ M LA + S ++KLA ++ NQ+
Sbjct: 137 AVDVIVVDSVAAL-TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 195
Query: 273 VAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQI 332
++ +F P+ GGN + ++ RL +R RI V + +E R ++
Sbjct: 196 RMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVKV 246
Query: 333 SAQGVA 338
+A
Sbjct: 247 VKNKIA 252
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 62
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 63 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 111
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 112 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 169
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 170 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 220
Query: 332 ISAQGVA 338
+ +A
Sbjct: 221 VVKNKIA 227
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 359 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 411
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 412 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 460
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 461 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 518
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 519 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 569
Query: 332 ISAQGVA 338
+ +A
Sbjct: 570 VVKNKIA 576
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 760
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 761 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 809
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 810 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 868 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 918
Query: 332 ISAQGVA 338
+ +A
Sbjct: 919 VVKNKIA 925
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 1058 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 1110
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 1111 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 1159
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 1160 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1217
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 1218 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 1268
Query: 332 ISAQGVA 338
+ +A
Sbjct: 1269 VVKNKIA 1275
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 39 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 91
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 92 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 140
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 141 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 199 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 249
Query: 332 ISAQGVA 338
+ +A
Sbjct: 250 VVKNKIA 256
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 62
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 63 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 111
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 112 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 169
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 170 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 220
Query: 332 ISAQGVA 338
+ +A
Sbjct: 221 VVKNKIA 227
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 359 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 411
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 412 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 460
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 461 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 518
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 519 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 569
Query: 332 ISAQGVA 338
+ +A
Sbjct: 570 VVKNKIA 576
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 760
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 761 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 809
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 810 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 868 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 918
Query: 332 ISAQGVA 338
+ +A
Sbjct: 919 VVKNKIA 925
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 1057 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 1109
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 1110 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 1158
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 1159 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1216
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 1217 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 1267
Query: 332 ISAQGVA 338
+ +A
Sbjct: 1268 VVKNKIA 1274
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 1403 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 1455
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 1456 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 1504
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 1505 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 1563 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 1613
Query: 332 ISAQGVA 338
+ +A
Sbjct: 1614 VVKNKIA 1620
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 100 LEIIQITSGSRELDKIL-EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG 158
+++ I++GS LD L GG+ G I EIYG SGKT L + Q EG
Sbjct: 1751 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EG 1803
Query: 159 KA-MYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217
K +IDAE P A + G++ ++N+ ++ +T Q+ + +A +
Sbjct: 1804 KTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP-DTGEQALEICDA--LARSG 1852
Query: 218 RFALMIVDSATALY-RTDFSGRGELSARQMHLAKFLRS--LQKLADEF---GVAVVITNQ 271
+++VDS AL + + GE+ M LA + S ++KLA ++ NQ
Sbjct: 1853 AVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1910
Query: 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQ 331
+ ++ +F P+ GGN + ++ RL +R RI V + +E R +
Sbjct: 1911 IRMKI--GVMFGNPET-TTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 1961
Query: 332 ISAQGVA 338
+ +A
Sbjct: 1962 VVKNKIA 1968
>pdb|2Q6T|A Chain A, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|B Chain B, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|C Chain C, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|D Chain D, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
Length = 444
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 33/246 (13%)
Query: 65 QIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGS 124
+I ++ K D +LV F L + E+ + +G +ELD+++ G + GS
Sbjct: 143 KILEVALTKTDTEARPMRELVHETFEHIEALFQNKGEVAGVRTGFKELDQLI-GTLGPGS 201
Query: 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG-------------KAMYIDAEGTFRP 171
+ I GKT L + L +G G G + M +A
Sbjct: 202 LNIIAARPAMGKTAFA--LTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNR 259
Query: 172 QRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLE----AASMMVETRFALMIVDSA 227
RL Q+ DR DV ++ A Y D L+E A ++ + + L+I+D
Sbjct: 260 VRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIID-- 317
Query: 228 TALYRTDFSGRGELSA---RQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAG 284
Y SG G + RQ +A R L+ LA E G+ ++ +Q+ A+ A
Sbjct: 318 ---YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL-----SRAVEAR 369
Query: 285 PQIKPI 290
P +P+
Sbjct: 370 PNKRPM 375
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 95/242 (39%), Gaps = 56/242 (23%)
Query: 87 LGFTSATQLHAQ-RLEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLC 144
G S +L A+ +L++ +++GS LD L GG+ G ITEIYG GKT L +
Sbjct: 36 FGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIV 95
Query: 145 VTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY--NTDH 202
Q + G G +IDAE P YARA NTD
Sbjct: 96 AQAQ----KAG--GTCAFIDAEHALDP---------------------VYARALGVNTDE 128
Query: 203 QSRLLL------EAASMMVETRFALMIVDSATALYRTDFSGRGE-----------LSARQ 245
LL+ E A ++E +D + R E L AR
Sbjct: 129 ---LLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARL 185
Query: 246 MHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLAL 305
M A LR L + + G A + NQV ++ ++ P+ GG + ++ RL +
Sbjct: 186 MSQA--LRKLTAILSKTGTAAIFINQVREKI--GVMYGNPETT-TGGRALKFYASVRLDV 240
Query: 306 RK 307
RK
Sbjct: 241 RK 242
>pdb|1WCL|A Chain A, Nmr Structure Of The Carboxyterminal Domains Of
Escherichia Coli Nusa
Length = 76
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 44 LKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASK 83
L + G T+E +AY P KELL+I+G+ E V+ + E A
Sbjct: 23 LVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 62
>pdb|1U9L|A Chain A, Structural Basis For A Nusa- Protein N Interaction
pdb|1U9L|B Chain B, Structural Basis For A Nusa- Protein N Interaction
Length = 70
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 44 LKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASK 83
L + G T+E +AY P KELL+I+G+ E V+ + E A
Sbjct: 22 LVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 61
>pdb|4AEM|A Chain A, Structural And Biochemical Characterization Of A Novel
Carbohydrate Binding Module Of Endoglucanase Cel5a From
Eubacterium Cellulosolvens
Length = 134
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMY 162
I + SGS+ ++ GG + S E+ +++ + L ++ +D G + ++
Sbjct: 5 IVLFSGSKHVEFTDWGGTDWPSAYELQPPYQT----MPFDLNKNFEIKVDYSGADIVLIF 60
Query: 163 IDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRL 206
E +PQ QI+ Y ++G V A+AY +D S L
Sbjct: 61 ARWEHGSKPQIWAQISPYYVVDGTAVFTKEQIAKAYGSDDFSDL 104
>pdb|4AFD|A Chain A, Structural And Biochemical Characterization Of A Novel
Carbohydrate Binding Module Of Endoglucanase Cel5a From
Eubacterium Cellulosolvens With A Partially Bound
Cellotetraose Moeity
Length = 135
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMY 162
I + SGS+ ++ GG + S E+ +++ + L ++ +D G + ++
Sbjct: 6 IVLFSGSKHVEFTDWGGTDWPSAYELQPPYQT----MPFDLNKNFEIKVDYSGADIVLIF 61
Query: 163 IDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRL 206
E +PQ QI+ Y ++G V A+AY +D S L
Sbjct: 62 ARWEHGSKPQIWAQISPYYVVDGTAVFTKEQIAKAYGSDDFSDL 105
>pdb|4AFM|A Chain A, Structural And Biochemical Characterization Of A Novel
Carbohydrate Binding Module Of Endoglucanase Cel5a From
Eubacterium Cellulosolvens.
pdb|4AEK|A Chain A, Structural And Biochemical Characterization Of A Novel
Carbohydrate Binding Module Of Endoglucanase Cel5a From
Eubacterium Cellulosolvens
Length = 134
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMY 162
I + SGS+ ++ GG + S E+ +++ L ++ +D G + ++
Sbjct: 5 IVLFSGSKHVEFTDWGGTDWPSAYELQPPYQTXPFDLNKNF----EIKVDYSGADIVLIF 60
Query: 163 IDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRL 206
E +PQ QI+ Y ++G V A+AY +D S L
Sbjct: 61 ARWEHGSKPQIWAQISPYYVVDGTAVFTKEQIAKAYGSDDFSDL 104
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 105 ITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164
I G R+ DKILE + + G SGK H L V + L + G + D
Sbjct: 51 IIFGHRDFDKILEAKARGERVAVLTGFMPSGKFHFGHKLTVDQLIYLQKNGFKVFVAIAD 110
Query: 165 AE 166
AE
Sbjct: 111 AE 112
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 170 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 229
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 230 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 285
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 29 EQLQASG-IAALDVKKLKDAGLCTVESVAYSPRK----ELLQIKGISEAKVD---KIIEA 80
E+++ G IA V++ + + +V R+ E+L+++G S K + I +
Sbjct: 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDH 242
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
+ PLG TQ R ++++SG LD++ GG SI G +GKT L
Sbjct: 243 GINIFPLGAMRLTQ----RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|2ZME|B Chain B, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
Length = 238
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 43 KLKDAGLCTVESVAYSPRKELLQIKGISEAKVD--KIIEAASKLVPLGFTSATQLHAQRL 100
+++ G+ +E RKE K ISEA D K++ A ++V L + A ++ ++
Sbjct: 2 RIRAVGIVGIERKLEEKRKE--TDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQG 59
Query: 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG 156
+I + R +L G+ E YG QL L Q+PL++ GG
Sbjct: 60 DITE-DETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGG 114
>pdb|2JZB|B Chain B, Solution Structure Of The Complex Between E.Coli
Nusa-Ar2 And Rnap-Actd
Length = 74
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 43 KLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLG 88
KL G+CT+E +A +L I+G+++ K +I AA + G
Sbjct: 26 KLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFG 71
>pdb|1WCN|A Chain A, Nmr Structure Of The Carboxyterminal Domains Of
Escherichia Coli Nusa
Length = 70
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 43 KLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLG 88
KL G+CT+E +A +L I+G+++ K +I AA + G
Sbjct: 22 KLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFG 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,519,201
Number of Sequences: 62578
Number of extensions: 336207
Number of successful extensions: 919
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 101
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)