BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019381
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40134|RAD51_SOLLC DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51
PE=2 SV=1
Length = 342
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/343 (93%), Positives = 333/343 (97%), Gaps = 2/343 (0%)
Query: 1 MEQQ-RNQKTVQQQQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSP 59
MEQQ RNQK++Q Q +E+E++QHGPFPVEQLQASGIAALDVKKLKDAGLCTVESV Y+P
Sbjct: 1 MEQQHRNQKSMQDQN-DEIEDVQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVVYAP 59
Query: 60 RKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGG 119
RKELLQIKGISEAKVDKIIEAASKLVPLGFTSA+QLHAQRLEIIQITSGS+ELDKILEGG
Sbjct: 60 RKELLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQITSGSKELDKILEGG 119
Query: 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179
+ETGSITEIYGEFR GKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD
Sbjct: 120 IETGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179
Query: 180 RYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRG 239
RYGLNG DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRG
Sbjct: 180 RYGLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRG 239
Query: 240 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHAS 299
ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSA+FAGPQIKPIGGNIMAHAS
Sbjct: 240 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAVFAGPQIKPIGGNIMAHAS 299
Query: 300 TTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVADVKD 342
TTRLALRKGR EERICKV+SSPCLAEAEARFQIS +GV DVKD
Sbjct: 300 TTRLALRKGRAEERICKVVSSPCLAEAEARFQISVEGVTDVKD 342
>sp|P94102|RAD51_ARATH DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana GN=RAD51
PE=1 SV=1
Length = 342
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/342 (89%), Positives = 326/342 (95%), Gaps = 3/342 (0%)
Query: 1 MEQQRNQKTVQQQQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPR 60
MEQ+RNQ VQQQ EE QHGPFPVEQLQA+GIA++DVKKL+DAGLCTVE VAY+PR
Sbjct: 4 MEQRRNQNAVQQQDDEE---TQHGPFPVEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPR 60
Query: 61 KELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGV 120
K+LLQIKGIS+AKVDKI+EAASKLVPLGFTSA+QLHAQR EIIQITSGSRELDK+LEGG+
Sbjct: 61 KDLLQIKGISDAKVDKIVEAASKLVPLGFTSASQLHAQRQEIIQITSGSRELDKVLEGGI 120
Query: 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180
ETGSITE+YGEFRSGKTQLCHTLCVTCQLP+DQGGGEGKAMYIDAEGTFRPQRLLQIADR
Sbjct: 121 ETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180
Query: 181 YGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240
+GLNGADVLENVAYARAYNTDHQSRLLLEAASMM+ETRFAL+IVDSATALYRTDFSGRGE
Sbjct: 181 FGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALLIVDSATALYRTDFSGRGE 240
Query: 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHAST 300
LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSA+FAGPQ KPIGGNIMAHA+T
Sbjct: 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSALFAGPQFKPIGGNIMAHATT 300
Query: 301 TRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVADVKD 342
TRLALRKGR EERICKVISSPCL EAEARFQIS +GV D KD
Sbjct: 301 TRLALRKGRAEERICKVISSPCLPEAEARFQISTEGVTDCKD 342
>sp|Q9XED7|R51A2_MAIZE DNA repair protein RAD51 homolog B OS=Zea mays GN=RAD51B PE=2 SV=1
Length = 340
Score = 633 bits (1633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/326 (92%), Positives = 321/326 (98%)
Query: 17 ELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDK 76
E E +HGPFP+EQLQASGIAALDVKKLKDAGLCTVESVAYSPRK+LLQIKGISEAKVDK
Sbjct: 15 EEEATEHGPFPIEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKDLLQIKGISEAKVDK 74
Query: 77 IIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGK 136
IIEAASKLVPLGFTSA+QLHAQRLEIIQ+T+GSRELD+IL+GG+ETGSITE+YGEFRSGK
Sbjct: 75 IIEAASKLVPLGFTSASQLHAQRLEIIQLTTGSRELDQILDGGIETGSITEMYGEFRSGK 134
Query: 137 TQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYAR 196
TQLCHTLCVTCQLPLDQGGGEGKA+YIDAEGTFRPQR+LQIADR+GLNGADVLENVAYAR
Sbjct: 135 TQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRILQIADRFGLNGADVLENVAYAR 194
Query: 197 AYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQ 256
AYNTDHQSRLLLEAASMMVETRFALM+VDSATALYRTDFSGRGELSARQMHLAKFLRSLQ
Sbjct: 195 AYNTDHQSRLLLEAASMMVETRFALMVVDSATALYRTDFSGRGELSARQMHLAKFLRSLQ 254
Query: 257 KLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICK 316
KLADEFGVAVVITNQVVAQVDG+A+FAGPQIKPIGGNIMAHASTTRL LRKGRGEERICK
Sbjct: 255 KLADEFGVAVVITNQVVAQVDGAAMFAGPQIKPIGGNIMAHASTTRLFLRKGRGEERICK 314
Query: 317 VISSPCLAEAEARFQISAQGVADVKD 342
VISSPCLAEAEARFQIS++GV DVKD
Sbjct: 315 VISSPCLAEAEARFQISSEGVTDVKD 340
>sp|Q67EU8|R51A1_MAIZE DNA repair protein RAD51 homolog A OS=Zea mays GN=RAD51A PE=2 SV=2
Length = 340
Score = 623 bits (1607), Expect = e-178, Method: Compositional matrix adjust.
Identities = 295/322 (91%), Positives = 318/322 (98%)
Query: 21 IQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEA 80
++HGPFP+EQLQASGIAALDVKKLKD+GL TVE+VAY+PRK+LLQIKGISEAK DKIIEA
Sbjct: 19 VEHGPFPIEQLQASGIAALDVKKLKDSGLHTVEAVAYTPRKDLLQIKGISEAKADKIIEA 78
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
ASK+VPLGFTSA+QLHAQRLEIIQ+T+GSRELDKILEGG+ETGSITEIYGEFRSGKTQLC
Sbjct: 79 ASKIVPLGFTSASQLHAQRLEIIQVTTGSRELDKILEGGIETGSITEIYGEFRSGKTQLC 138
Query: 141 HTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNT 200
HT CVTCQLPLDQGGGEGKA+YIDAEGTFRPQRLLQIADR+GLNGADVLENVAYARAYNT
Sbjct: 139 HTPCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNT 198
Query: 201 DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLAD 260
DHQSRLLLEAASMM+ETRFALM+VDSATALYRTDFSGRGELSARQMH+AKFLRSLQKLAD
Sbjct: 199 DHQSRLLLEAASMMIETRFALMVVDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLAD 258
Query: 261 EFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISS 320
EFGVAVVITNQVVAQVDGSA+FAGPQ KPIGGNIMAHASTTRLALRKGRGEERICKVISS
Sbjct: 259 EFGVAVVITNQVVAQVDGSAMFAGPQFKPIGGNIMAHASTTRLALRKGRGEERICKVISS 318
Query: 321 PCLAEAEARFQISAQGVADVKD 342
PCLAEAEARFQ++++G+ADVKD
Sbjct: 319 PCLAEAEARFQLASEGIADVKD 340
>sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1
SV=1
Length = 339
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 238/336 (70%), Positives = 290/336 (86%)
Query: 7 QKTVQQQQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQI 66
Q ++ +EE GP P+ +L+ GI A DVKKL++AG TVE+VAY+P+KEL+ I
Sbjct: 4 QMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI 63
Query: 67 KGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSIT 126
KGISEAK DKI+ A+KLVP+GFT+AT+ H +R EIIQIT+GS+ELDK+L+GG+ETGSIT
Sbjct: 64 KGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 127 EIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA 186
E++GEFR+GKTQ+CHTL VTCQLP+D+GGGEGKAMYID EGTFRP+RLL +A+RYGL+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 187 DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQM 246
DVL+NVAYARA+NTDHQ++LL +A++MMVE+R+AL+IVDSATALYRTD+SGRGELSARQM
Sbjct: 184 DVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 247 HLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALR 306
HLA+FLR L +LADEFGVAVVITNQVVAQVDG+A+FA KPIGGNI+AHASTTRL LR
Sbjct: 244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 303
Query: 307 KGRGEERICKVISSPCLAEAEARFQISAQGVADVKD 342
KGRGE RICK+ SPCL EAEA F I+A GV D KD
Sbjct: 304 KGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
>sp|Q2KJ94|RAD51_BOVIN DNA repair protein RAD51 homolog 1 OS=Bos taurus GN=RAD51 PE=2 SV=1
Length = 339
Score = 507 bits (1305), Expect = e-143, Method: Compositional matrix adjust.
Identities = 237/336 (70%), Positives = 289/336 (86%)
Query: 7 QKTVQQQQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQI 66
Q ++ +EE GP P+ +L+ GI A DVKKL++AG TVE+VAY+P+KEL+ I
Sbjct: 4 QMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI 63
Query: 67 KGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSIT 126
KGISEAK DKI+ A+KLVP+GFT+AT+ H +R EIIQIT+GS+ELDK+L+GG+ETGSIT
Sbjct: 64 KGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 127 EIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA 186
E++GEFR+GKTQ+CHTL VTCQLP+D+GGGEGKAMYID EGTFRP+RLL +A+RYGL+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 187 DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQM 246
DVL+NVAYAR +NTDHQ++LL +A++MMVE+R+AL+IVDSATALYRTD+SGRGELSARQM
Sbjct: 184 DVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 247 HLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALR 306
HLA+FLR L +LADEFGVAVVITNQVVAQVDG+A+FA KPIGGNI+AHASTTRL LR
Sbjct: 244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 303
Query: 307 KGRGEERICKVISSPCLAEAEARFQISAQGVADVKD 342
KGRGE RICK+ SPCL EAEA F I+A GV D KD
Sbjct: 304 KGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
>sp|P70099|RAD51_CRIGR DNA repair protein RAD51 homolog 1 OS=Cricetulus griseus GN=RAD51
PE=2 SV=1
Length = 339
Score = 507 bits (1305), Expect = e-143, Method: Compositional matrix adjust.
Identities = 237/336 (70%), Positives = 289/336 (86%)
Query: 7 QKTVQQQQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQI 66
Q ++ +EE GP P+ +L+ GI+A DVKKL++AG TVE+VAY+P+KEL+ I
Sbjct: 4 QMQLEANADTSVEEESFGPQPISRLEQCGISANDVKKLEEAGFHTVEAVAYAPKKELINI 63
Query: 67 KGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSIT 126
KGISEAK DKI+ A+KLVP+GFT+AT+ H +R EIIQIT+GS+ELDK+L+GG+ETGSIT
Sbjct: 64 KGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 127 EIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA 186
E++GEFR+GKTQ+CHTL VTCQLP+D+GGGEGKAMYID EGTFRP+RLL +A+RYGL+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 187 DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQM 246
DVL+NVAYAR +NTDHQ++LL +A++MMVE+R+AL+IVDSATALYRTD+SGRGELSARQM
Sbjct: 184 DVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 247 HLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALR 306
HLA+FLR L +LADEFGVAVVITNQVVAQVDG+A+F KPIGGNI+AHASTTRL LR
Sbjct: 244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFTADPKKPIGGNIIAHASTTRLYLR 303
Query: 307 KGRGEERICKVISSPCLAEAEARFQISAQGVADVKD 342
KGRGE RICKV SPCL EAEA F I+A GV D KD
Sbjct: 304 KGRGETRICKVYDSPCLPEAEAMFAINADGVGDAKD 339
>sp|Q8MKI8|RAD51_CANFA DNA repair protein RAD51 homolog 1 OS=Canis familiaris GN=RAD51
PE=2 SV=1
Length = 339
Score = 506 bits (1304), Expect = e-143, Method: Compositional matrix adjust.
Identities = 237/336 (70%), Positives = 289/336 (86%)
Query: 7 QKTVQQQQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQI 66
Q ++ +EE GP P+ +L+ GI A DVKKL++AG TVE+VAY+P+KEL+ I
Sbjct: 4 QMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELISI 63
Query: 67 KGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSIT 126
KGISEAK DKI+ A+KLVP+GFT+AT+ H +R EIIQIT+GS+ELDK+L+GG+ETGSIT
Sbjct: 64 KGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 127 EIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA 186
E++GEFR+GKTQ+CHTL VTCQLP+D+GGGEGKAMYID EGTFRP+RLL +A+RYGL+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 187 DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQM 246
DVL+NVAYAR +NTDHQ++LL +A++MMVE+R+AL+IVDSATALYRTD+SGRGELSARQM
Sbjct: 184 DVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 247 HLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALR 306
HLA+FLR L +LADEFGVAVVITNQVVAQVDG+A+FA KPIGGNI+AHASTTRL LR
Sbjct: 244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 303
Query: 307 KGRGEERICKVISSPCLAEAEARFQISAQGVADVKD 342
KGRGE RICK+ SPCL EAEA F I+A GV D KD
Sbjct: 304 KGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
>sp|Q08297|RAD51_MOUSE DNA repair protein RAD51 homolog 1 OS=Mus musculus GN=Rad51 PE=1
SV=1
Length = 339
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/325 (72%), Positives = 286/325 (88%)
Query: 18 LEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKI 77
+EE GP P+ +L+ GI A DVKKL++AG TVE+VAY+P+KEL+ IKGISEAK DKI
Sbjct: 15 VEEESFGPQPISRLEQCGINANDVKKLEEAGYHTVEAVAYAPKKELINIKGISEAKADKI 74
Query: 78 IEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKT 137
+ A+KLVP+GFT+AT+ H +R EIIQIT+GS+ELDK+L+GG+ETGSITE++GEFR+GKT
Sbjct: 75 LTEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKT 134
Query: 138 QLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARA 197
Q+CHTL VTCQLP+D+GGGEGKAMYID EGTFRP+RLL +A+RYGL+G+DVL+NVAYAR
Sbjct: 135 QICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARG 194
Query: 198 YNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQK 257
+NTDHQ++LL +A++MMVE+R+AL+IVDSATALYRTD+SGRGELSARQMHLA+FLR L +
Sbjct: 195 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLR 254
Query: 258 LADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKV 317
LADEFGVAVVITNQVVAQVDG+A+FA KPIGGNI+AHASTTRL LRKGRGE RICK+
Sbjct: 255 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKI 314
Query: 318 ISSPCLAEAEARFQISAQGVADVKD 342
SPCL EAEA F I+A GV D KD
Sbjct: 315 YDSPCLPEAEAMFAINADGVGDAKD 339
>sp|Q91917|RA51B_XENLA DNA repair protein RAD51 homolog B OS=Xenopus laevis GN=rad51-b
PE=2 SV=1
Length = 336
Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/329 (72%), Positives = 285/329 (86%)
Query: 14 QQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAK 73
Q E EE GP + +L+ GI A DVKKL+DAG TVE+VAY+P+KELL IKGISEAK
Sbjct: 8 QAEATEEENFGPQAITRLEQCGINANDVKKLEDAGFHTVEAVAYAPKKELLNIKGISEAK 67
Query: 74 VDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFR 133
+KI+ A+KLVP+GFT+AT+ H +R EIIQI +GS+ELDK+L+GG+ETGSITE++GEFR
Sbjct: 68 AEKILAEAAKLVPMGFTTATEFHQRRSEIIQIGTGSKELDKLLQGGIETGSITEMFGEFR 127
Query: 134 SGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVA 193
+GKTQLCHTL VTCQLP+D+GGGEGKAMYID EGTFRP+RLL +A+RYGL+G+DVL+NVA
Sbjct: 128 TGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 187
Query: 194 YARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLR 253
YARA+NTDHQ++LL +A++MM E+R+AL+IVDSATALYRTD+SGRGELSARQMHLA+FLR
Sbjct: 188 YARAFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 247
Query: 254 SLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEER 313
L +LADEFGVAVVITNQVVAQVDG+A+FA KPIGGNI+AHASTTRL LRKGRGE R
Sbjct: 248 MLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETR 307
Query: 314 ICKVISSPCLAEAEARFQISAQGVADVKD 342
ICK+ SPCL EAEA F I+A GV D KD
Sbjct: 308 ICKIYDSPCLPEAEAMFAINADGVGDAKD 336
>sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog 1 OS=Gallus gallus GN=RAD51A PE=2
SV=1
Length = 339
Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/324 (72%), Positives = 284/324 (87%)
Query: 19 EEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKII 78
EE GP P+ +L+ GI A DVKKL++AG TVESVA++P+KELL IKGISEAK DKI+
Sbjct: 16 EEESFGPEPISRLEQCGINANDVKKLEEAGYHTVESVAHAPKKELLNIKGISEAKADKIL 75
Query: 79 EAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQ 138
A+KLVP+GFT+AT+ H +R EIIQIT+GS+ELDK+L+GG+ETGSITE++GEFR+GKTQ
Sbjct: 76 AEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITELFGEFRTGKTQ 135
Query: 139 LCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198
LCHTL VTCQLP+D+GGGEGKAMYID EGTFRP+RLL +A+RYGL+G+DVL+NVAYAR +
Sbjct: 136 LCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGF 195
Query: 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKL 258
NTDHQ++LL +A++MM E+R+AL+IVDSATALYRTD+SGRGELSARQMHLA+FLR L +L
Sbjct: 196 NTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRL 255
Query: 259 ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVI 318
ADEFGVAVVITNQVVAQVDG+A+FA KPIGGNI+AHASTTRL LRKGRGE RICK+
Sbjct: 256 ADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIY 315
Query: 319 SSPCLAEAEARFQISAQGVADVKD 342
SPCL EAEA F I+A GV D K+
Sbjct: 316 DSPCLPEAEAMFAINADGVGDAKE 339
>sp|O77507|RAD51_RABIT DNA repair protein RAD51 homolog 1 OS=Oryctolagus cuniculus
GN=RAD51 PE=2 SV=1
Length = 339
Score = 503 bits (1295), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/336 (70%), Positives = 287/336 (85%)
Query: 7 QKTVQQQQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQI 66
Q ++ +EE GP PV +L+ GI A DVKKL++AG T E+VAY+P+KEL+ I
Sbjct: 4 QMQLEANADTSVEEESFGPQPVSRLEQCGINANDVKKLEEAGFHTEEAVAYAPKKELINI 63
Query: 67 KGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSIT 126
KGISEAK DKI+ A+KLVP+GFT+AT+ H +R EIIQIT+GS+ELDK+L+GG+ETGSIT
Sbjct: 64 KGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 127 EIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA 186
E++GEFR+GKTQ+CHTL VTCQLP+D+GGGEGKAMYID EGTFRP+RLL +A+RYGL+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 187 DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQM 246
DVL+NVAYAR +NTDHQ++LL +A++MMVE+R+AL+IVDSATALYRTD+SGRGELSARQM
Sbjct: 184 DVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 247 HLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALR 306
HLA+FLR L +LADEFGV VVITNQVVAQVDG+A+FA KPIGGNI+AHASTTRL LR
Sbjct: 244 HLARFLRMLLRLADEFGVTVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 303
Query: 307 KGRGEERICKVISSPCLAEAEARFQISAQGVADVKD 342
KGRGE RICK+ SPCL EAEA F I+A GV D KD
Sbjct: 304 KGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
>sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A OS=Xenopus laevis GN=rad51-a
PE=2 SV=1
Length = 336
Score = 503 bits (1295), Expect = e-142, Method: Compositional matrix adjust.
Identities = 237/329 (72%), Positives = 286/329 (86%)
Query: 14 QQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAK 73
+ E EE GP + +L+ GI A DVKKL++AG TVE+VAY+P+KELL IKGISEAK
Sbjct: 8 EAEATEEEHFGPQAISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELLNIKGISEAK 67
Query: 74 VDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFR 133
+KI+ A+KLVP+GFT+AT+ H +R EIIQI++GS+ELDK+L+GGVETGSITE++GEFR
Sbjct: 68 AEKILAEAAKLVPMGFTTATEFHQRRSEIIQISTGSKELDKLLQGGVETGSITEMFGEFR 127
Query: 134 SGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVA 193
+GKTQLCHTL VTCQLP+D+GGGEGKAMYID EGTFRP+RLL +A+RYGL+G+DVL+NVA
Sbjct: 128 TGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 187
Query: 194 YARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLR 253
YARA+NTDHQ++LL +A++MM E+R+AL+IVDSATALYRTD+SGRGELSARQMHLA+FLR
Sbjct: 188 YARAFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 247
Query: 254 SLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEER 313
L +LADEFGVAVVITNQVVAQVDG+A+FA KPIGGNI+AHASTTRL LRKGRGE R
Sbjct: 248 MLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETR 307
Query: 314 ICKVISSPCLAEAEARFQISAQGVADVKD 342
ICK+ SPCL EAEA F I+A GV D KD
Sbjct: 308 ICKIYDSPCLPEAEAMFAINADGVGDAKD 336
>sp|P36601|RAD51_SCHPO DNA repair protein rhp51 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp51 PE=1 SV=1
Length = 365
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 222/328 (67%), Positives = 280/328 (85%), Gaps = 1/328 (0%)
Query: 15 QEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKV 74
Q+E +E GP P++ L+ +GI A D+KK+ +AG TVES+AY+P+++LL IKGISEAK
Sbjct: 34 QDEEDEAAAGPMPLQMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLLLIKGISEAKA 93
Query: 75 DKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRS 134
DK++ ASKLVP+GFT+AT+ H +R E+I IT+GS++LD +L+GGVETGSITE++GEFR+
Sbjct: 94 DKLLGEASKLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRT 153
Query: 135 GKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAY 194
GK+Q+CHTL VTCQLP+D GGGEGK +YID EGTFRP RLL +ADRYGLNG +VL+NVAY
Sbjct: 154 GKSQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAY 213
Query: 195 ARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRS 254
ARAYN DHQ LL +AA+MM E+RF+L++VDS TALYRTDFSGRGELSARQMHLA+F+R+
Sbjct: 214 ARAYNADHQLELLQQAANMMSESRFSLLVVDSCTALYRTDFSGRGELSARQMHLARFMRT 273
Query: 255 LQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERI 314
LQ+LADEFG+AVVITNQVVAQVDG + P+ KPIGGNI+AH+STTRL+LRKGRGE+RI
Sbjct: 274 LQRLADEFGIAVVITNQVVAQVDGISFNPDPK-KPIGGNILAHSSTTRLSLRKGRGEQRI 332
Query: 315 CKVISSPCLAEAEARFQISAQGVADVKD 342
CK+ SPCL E+EA F I++ GV D K+
Sbjct: 333 CKIYDSPCLPESEAIFAINSDGVGDPKE 360
>sp|Q99133|RAD51_USTMA DNA repair protein RAD51 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RAD51 PE=3 SV=1
Length = 339
Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 215/319 (67%), Positives = 268/319 (84%)
Query: 24 GPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASK 83
GP PV +L+ GI++ D KKL ++G TVES+A++P+K+LL +KG+SEAK DKI+ A++
Sbjct: 21 GPLPVSKLEEFGISSSDCKKLAESGYNTVESIAFTPKKQLLLVKGVSEAKADKILAEAAR 80
Query: 84 LVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTL 143
LVP+GFT+AT+ HA+R E+I IT+GS+ LD IL GG+ETGSITE+YGEFR+GK+QLCHTL
Sbjct: 81 LVPMGFTTATEFHARRNELISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTL 140
Query: 144 CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQ 203
VTCQLP+D GGGEGK +YID E TFRP RLL +A+R+GLNG +VL+NVAYARAYN DHQ
Sbjct: 141 AVTCQLPVDMGGGEGKCLYIDTENTFRPTRLLAVAERFGLNGEEVLDNVAYARAYNADHQ 200
Query: 204 SRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 263
+LL++A++MM E+RF+L+IVDS T+LYRTDFSGRGELSARQMHLAKFLR L +LADEFG
Sbjct: 201 LQLLMQASAMMAESRFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFG 260
Query: 264 VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCL 323
VAVVITNQVVAQVDG+ F KPIGGNI+AHASTTRL+LRKGRG +RIC++ SPCL
Sbjct: 261 VAVVITNQVVAQVDGATAFTADAKKPIGGNIVAHASTTRLSLRKGRGNQRICRIADSPCL 320
Query: 324 AEAEARFQISAQGVADVKD 342
EA+A F I +G+ D D
Sbjct: 321 PEADAVFAIGPEGIIDPVD 339
>sp|P25454|RAD51_YEAST DNA repair protein RAD51 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD51 PE=1 SV=1
Length = 400
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/332 (64%), Positives = 264/332 (79%), Gaps = 1/332 (0%)
Query: 12 QQQQEELEEIQHGPF-PVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGIS 70
+ + E +E G F P+E+LQ +GI DVKKL+++GL T E+VAY+PRK+LL+IKGIS
Sbjct: 66 EMEDEAYDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGIS 125
Query: 71 EAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYG 130
EAK DK++ A++LVP+GF +A H +R E+I +T+GS+ LD +L GGVETGSITE++G
Sbjct: 126 EAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFG 185
Query: 131 EFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLE 190
EFR+GK+QLCHTL VTCQ+PLD GGGEGK +YID EGTFRP RL+ IA R+GL+ D L
Sbjct: 186 EFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALN 245
Query: 191 NVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAK 250
NVAYARAYN DHQ RLL AA MM E+RF+L++VDS ALYRTDFSGRGELSARQMHLAK
Sbjct: 246 NVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAK 305
Query: 251 FLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRG 310
F+R+LQ+LAD+FGVAVV+TNQVVAQVDG F KPIGGNIMAH+STTRL +KG+G
Sbjct: 306 FMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAHSSTTRLGFKKGKG 365
Query: 311 EERICKVISSPCLAEAEARFQISAQGVADVKD 342
+R+CKV+ SPCL EAE F I GV D ++
Sbjct: 366 CQRLCKVVDSPCLPEAECVFAIYEDGVGDPRE 397
>sp|Q27297|RAD51_DROME DNA repair protein Rad51 homolog OS=Drosophila melanogaster
GN=spn-A PE=2 SV=1
Length = 336
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/320 (60%), Positives = 245/320 (76%), Gaps = 3/320 (0%)
Query: 24 GPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASK 83
GP V +L I A D+K L+ A L TVESVA + +K+L+ I G+ KV++II A+K
Sbjct: 18 GPLSVTKLIGGSITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANK 77
Query: 84 LVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTL 143
LVPLGF SA + R +++Q+++GS+ELDK+L GG+ETGSITEI+GEFR GKTQLCHTL
Sbjct: 78 LVPLGFLSARTFYQMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTL 137
Query: 144 CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQ 203
VTCQLP+ Q GGEGK MYID E TFRP+RL IA RY LN ++VL+NVA+ RA+N+D Q
Sbjct: 138 AVTCQLPISQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQ 197
Query: 204 SRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 263
++L+ AA M+ E+R+AL+IVDSA ALYR+D+ GRGEL+ARQ HL FLR LQ+LADEFG
Sbjct: 198 TKLIQMAAGMLFESRYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFG 257
Query: 264 VAVVITNQVVAQVDGS-AIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPC 322
VAVVITNQV A +DG+ +F KPIGG+IMAH+STTRL LRKG+GE RICK+ SPC
Sbjct: 258 VAVVITNQVTASLDGAPGMFDAK--KPIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPC 315
Query: 323 LAEAEARFQISAQGVADVKD 342
L E+EA F I G+ D ++
Sbjct: 316 LPESEAMFAILPDGIGDARE 335
>sp|Q96449|DMC1_SOYBN Meiotic recombination protein DMC1 homolog OS=Glycine max PE=2 SV=1
Length = 345
Score = 349 bits (896), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/315 (55%), Positives = 225/315 (71%), Gaps = 1/315 (0%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
+++L A GI A DVKKL+DAG+ T + +K L IKG+SEAKVDKI EAA KLV
Sbjct: 32 IDKLIAQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLVNF 91
Query: 88 GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTC 147
G+ + + +R +I+IT+GS+ LD++L GGVET +ITE +GEFRSGKTQL HTLCV+
Sbjct: 92 GYITGSDALLKRKSVIRITTGSQALDELLGGGVETSAITEAFGEFRSGKTQLAHTLCVST 151
Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLL 207
QLP + GG GK YID EGTFRP R++ IA+R+G++ VL+N+ YARAY +HQ LL
Sbjct: 152 QLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL 211
Query: 208 LEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 267
L A+ M E F L+IVDS AL+R DFSGRGEL+ RQ LA+ L L K+A+EF VAV
Sbjct: 212 LGLAAKMSEEPFRLLIVDSVIALFRVDFSGRGELADRQQKLAQMLSRLIKIAEEFNVAVY 271
Query: 268 ITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAE 327
+TNQV++ G P+ KP GG+++AHA+T RL RKG+GE+RICKV +P L EAE
Sbjct: 272 MTNQVISDPGGGVFVTDPK-KPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPEAE 330
Query: 328 ARFQISAQGVADVKD 342
A FQI+A G+AD KD
Sbjct: 331 AVFQITAGGIADAKD 345
>sp|P37384|DMC1_LILLO Meiotic recombination protein DMC1 homolog OS=Lilium longiflorum
GN=LIM15 PE=2 SV=1
Length = 349
Score = 347 bits (891), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 170/315 (53%), Positives = 228/315 (72%), Gaps = 1/315 (0%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
+++L + GI A DVKKL+DAG+ T + +K L IKG+SEAKVDKI EAA KLV +
Sbjct: 36 IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLVNV 95
Query: 88 GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTC 147
G+ + + + +R +I+IT+GS+ LD++L GG+ET ITE +GEFRSGKTQ+ HTLCV+
Sbjct: 96 GYITGSDVLLKRKSVIRITTGSQALDELLGGGIETLQITEAFGEFRSGKTQIAHTLCVST 155
Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLL 207
QLP+ GG GK YID EGTFRP R++ IA+R+G++ + VL+N+ YARAY +HQ LL
Sbjct: 156 QLPVSMHGGNGKVAYIDTEGTFRPDRIVPIAERFGMDASAVLDNIIYARAYTYEHQYNLL 215
Query: 208 LEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 267
L A+ M E F L+IVDS AL+R DFSGRGEL+ RQ LA+ L L K+A+EF VAV
Sbjct: 216 LALAAKMSEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVY 275
Query: 268 ITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAE 327
+TNQV+A G + P+ KP GG+++AHA+T RL LRKG+GE+R+CK+ +P L E+E
Sbjct: 276 MTNQVIADPGGGMFISDPK-KPAGGHVLAHAATVRLMLRKGKGEQRVCKIFDAPNLPESE 334
Query: 328 ARFQISAQGVADVKD 342
A FQI+ GVAD KD
Sbjct: 335 AVFQITPGGVADAKD 349
>sp|Q39009|DMC1_ARATH Meiotic recombination protein DMC1 homolog OS=Arabidopsis thaliana
GN=LIM15 PE=1 SV=2
Length = 344
Score = 340 bits (873), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 167/315 (53%), Positives = 223/315 (70%), Gaps = 1/315 (0%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
+++L A GI A DVKKL++AG+ T + +K L IKG+SEAKVDKI EAA K+V
Sbjct: 31 IDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNF 90
Query: 88 GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTC 147
G+ + + +R +++IT+G + LD +L GG+ET +ITE +GEFRSGKTQL HTLCVT
Sbjct: 91 GYMTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTT 150
Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLL 207
QLP + GG GK YID EGTFRP R++ IA+R+G++ VL+N+ YARAY +HQ LL
Sbjct: 151 QLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL 210
Query: 208 LEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 267
L A+ M E F ++IVDS AL+R DF+GRGEL+ RQ LA+ L L K+A+EF VAV
Sbjct: 211 LGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVY 270
Query: 268 ITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAE 327
+TNQV+A G + P+ KP GG+++AHA+T RL RKG+G+ R+CKV +P LAEAE
Sbjct: 271 MTNQVIADPGGGMFISDPK-KPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAE 329
Query: 328 ARFQISAQGVADVKD 342
A FQI+ G+AD KD
Sbjct: 330 ASFQITQGGIADAKD 344
>sp|Q61880|DMC1_MOUSE Meiotic recombination protein DMC1/LIM15 homolog OS=Mus musculus
GN=Dmc1 PE=1 SV=1
Length = 340
Score = 326 bits (836), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/317 (51%), Positives = 218/317 (68%), Gaps = 2/317 (0%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
++ LQ GI D+KKLK G+CT++ + + R+ L +KG+SEAKV+KI EAA+KL+
Sbjct: 24 IDLLQKHGINMADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVEKIKEAANKLIEP 83
Query: 88 GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTC 147
GF +A Q +R + IT+GS+E DK+L GG+E+ +ITE +GEFR+GKTQL HTLCVT
Sbjct: 84 GFLTAFQYSERRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 143
Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLL 207
QLP G GK ++ID E TFRP RL IADR+ ++ VL+NV YARAY ++HQ LL
Sbjct: 144 QLPGTGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHEAVLDNVLYARAYTSEHQMELL 203
Query: 208 LEAASMMVETR--FALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVA 265
A+ E F L+I+DS AL+R DFSGRGEL+ RQ LA+ L LQK+++E+ VA
Sbjct: 204 DYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVA 263
Query: 266 VVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 325
V +TNQ+ A + F KPIGG+I+AHASTTR++LRKGRGE RI K+ SP + E
Sbjct: 264 VFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPE 323
Query: 326 AEARFQISAQGVADVKD 342
EA F I+A G+ D K+
Sbjct: 324 NEATFAITAGGIGDAKE 340
>sp|Q14565|DMC1_HUMAN Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens
GN=DMC1 PE=1 SV=2
Length = 340
Score = 325 bits (834), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 163/317 (51%), Positives = 218/317 (68%), Gaps = 2/317 (0%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
++ LQ GI D+KKLK G+CT++ + + R+ L +KG+SEAKVDKI EAA+KL+
Sbjct: 24 IDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEP 83
Query: 88 GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTC 147
GF +A + +R + IT+GS+E DK+L GG+E+ +ITE +GEFR+GKTQL HTLCVT
Sbjct: 84 GFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 143
Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLL 207
QLP G GK ++ID E TFRP RL IADR+ ++ VL+NV YARAY ++HQ LL
Sbjct: 144 QLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELL 203
Query: 208 LEAASMMVETR--FALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVA 265
A+ E F L+I+DS AL+R DFSGRGEL+ RQ LA+ L LQK+++E+ VA
Sbjct: 204 DYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVA 263
Query: 266 VVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 325
V +TNQ+ A + F KPIGG+I+AHASTTR++LRKGRGE RI K+ SP + E
Sbjct: 264 VFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPE 323
Query: 326 AEARFQISAQGVADVKD 342
EA F I+A G+ D K+
Sbjct: 324 NEATFAITAGGIGDAKE 340
>sp|O42634|DMC1_SCHPO Meiotic recombination protein dmc1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dmc1 PE=1 SV=2
Length = 332
Score = 324 bits (830), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 158/314 (50%), Positives = 217/314 (69%), Gaps = 1/314 (0%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
+E L A GI D+ KLK AG+CTV+ V S ++ LL+IKG SEAKVDK+ EAASK+ P
Sbjct: 18 IEDLTAHGIGMTDIIKLKQAGVCTVQGVHMSTKRFLLKIKGFSEAKVDKLKEAASKMCPA 77
Query: 88 GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTC 147
F++A ++ R ++ I++GS L+ IL GG+++ SITE++GEFR GKTQ+ HTLCVT
Sbjct: 78 NFSTAMEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTA 137
Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLL 207
QLP D GG EGK +ID EGTFRP R+ IA+R+G++ +EN+ +RAYN++ Q +
Sbjct: 138 QLPRDMGGAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAMENIIVSRAYNSEQQMEYI 197
Query: 208 LEAASMMVET-RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAV 266
+ ++ E ++ L+IVDS AL+R D+SGRGELS RQ L L L +++EF VAV
Sbjct: 198 TKLGTIFAEDGQYRLLIVDSIMALFRVDYSGRGELSERQQKLNIMLARLNHISEEFNVAV 257
Query: 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA 326
+TNQV A + +FA KP+GG++MAHAS TRL LRKGRGEER+ K+ SP + EA
Sbjct: 258 FVTNQVQADPGAAMMFASNDRKPVGGHVMAHASATRLLLRKGRGEERVAKLNDSPDMPEA 317
Query: 327 EARFQISAQGVADV 340
E + I+ G+ADV
Sbjct: 318 ECSYVITPGGIADV 331
>sp|P50265|DLH1_CANAX Meiotic recombination protein DLH1 OS=Candida albicans GN=DLH1 PE=3
SV=1
Length = 324
Score = 323 bits (827), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 156/320 (48%), Positives = 220/320 (68%), Gaps = 1/320 (0%)
Query: 21 IQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEA 80
++ ++ LQ GI A D+ KLK AG+C++ SV + R+ L +IKG+SE KV+KI EA
Sbjct: 3 VEDSIISIDSLQDQGINAGDINKLKSAGICSITSVLSTTRRNLTKIKGLSEIKVEKIKEA 62
Query: 81 ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140
A K+ GF AT + R ++ IT+GS++ D+IL GG+++ SITE++GEFR GKTQLC
Sbjct: 63 AGKIKKYGFLPATIVAESRTKVFHITTGSKQFDEILGGGIQSMSITEVFGEFRCGKTQLC 122
Query: 141 HTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNT 200
HTLCV QLP D GGGEG+ YID EGTFRP R+ IA+RYG++ LEN++YARA N+
Sbjct: 123 HTLCVAAQLPTDMGGGEGRVAYIDTEGTFRPDRIRSIAERYGVDADICLENISYARALNS 182
Query: 201 DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLAD 260
+HQ L+ + + + E F L+IVDS A +R D+SGRGEL+ RQ L + L +L ++A+
Sbjct: 183 EHQIELVEQLGNELAEGTFRLLIVDSIMACFRVDYSGRGELNERQQKLNQHLSNLTRVAE 242
Query: 261 EFGVAVVITNQVVAQVDGSAIFAGPQ-IKPIGGNIMAHASTTRLALRKGRGEERICKVIS 319
++ +AV +TNQV + SA+FA KP+GG+++AHAS TR+ LRKGRGEER+ K+
Sbjct: 243 DYNIAVFLTNQVQSDPGASALFAAADGRKPVGGHVLAHASATRILLRKGRGEERVAKLQD 302
Query: 320 SPCLAEAEARFQISAQGVAD 339
SP + E E + I G+ D
Sbjct: 303 SPNMPEKECVYVIGEGGIKD 322
>sp|P25453|DMC1_YEAST Meiotic recombination protein DMC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DMC1 PE=1 SV=1
Length = 334
Score = 307 bits (787), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 157/318 (49%), Positives = 214/318 (67%), Gaps = 1/318 (0%)
Query: 26 FPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLV 85
V++LQ GI A D++KLK G+ TV +V + R+ L +IKG+SE KV+KI EAA K++
Sbjct: 17 LSVDELQNYGINASDLQKLKSGGIYTVNTVLSTTRRHLCKIKGLSEVKVEKIKEAAGKII 76
Query: 86 PLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145
+GF AT R + +++GS++LD IL GG+ T SITE++GEFR GKTQ+ HTLCV
Sbjct: 77 QVGFIPATVQLDIRQRVYSLSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCV 136
Query: 146 TCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSR 205
T QLP + GGGEGK YID EGTFRP+R+ QIA+ Y L+ L NV+YARA N++HQ
Sbjct: 137 TTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEGYELDPESCLANVSYARALNSEHQME 196
Query: 206 LLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVA 265
L+ + + + L++VDS A +R D+ GRGELS RQ L + L L +LA+EF VA
Sbjct: 197 LVEQLGEELSSGDYRLIVVDSIMANFRVDYCGRGELSERQQKLNQHLFKLNRLAEEFNVA 256
Query: 266 VVITNQVVAQVDGSAIFAGPQ-IKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLA 324
V +TNQV + SA+FA KPIGG+++AHAS TR+ LRKGRG+ER+ K+ SP +
Sbjct: 257 VFLTNQVQSDPGASALFASADGRKPIGGHVLAHASATRILLRKGRGDERVAKLQDSPDMP 316
Query: 325 EAEARFQISAQGVADVKD 342
E E + I +G+ D D
Sbjct: 317 EKECVYVIGEKGITDSSD 334
>sp|A3MXX9|RADA_PYRCJ DNA repair and recombination protein RadA OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1
Length = 332
Score = 275 bits (703), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 148/313 (47%), Positives = 207/313 (66%), Gaps = 7/313 (2%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
VE+L+ GI + KLK+ G TV VAY+ KEL +I G SE + +I+EAA K++ L
Sbjct: 26 VEELE--GIGRVTGAKLKEKGYYTVRDVAYASVKELAEIVG-SEERAQQIVEAARKMLGL 82
Query: 88 -GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146
F SA +++ +R +I +I++G R LD++L GG+ET ++TE+ GEF SGKTQLCH L V
Sbjct: 83 HSFISALEVYERRKKIRRISTGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVM 142
Query: 147 CQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRL 206
QLP D+GG KA+YID E TFRP+R++QIA GL+ L N+ YARAY+ DHQ L
Sbjct: 143 VQLPEDRGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSADHQMVL 202
Query: 207 LLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAV 266
+ +A S++ + AL++VDS A +R +F GR L+ RQ L K + L +LAD + VAV
Sbjct: 203 VEQAKSLIRQHNVALLVVDSVIAHFRAEFPGRENLAERQQKLNKHIADLLRLADAYDVAV 262
Query: 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA 326
V+TNQV+AQ D +F G ++P GGNI+AH +T RL LRK + RI K+ SP E
Sbjct: 263 VVTNQVMAQPD---VFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEG 319
Query: 327 EARFQISAQGVAD 339
E F+I+ +G+ D
Sbjct: 320 EVSFRITEEGLVD 332
>sp|Q8ZYR9|RADA_PYRAE DNA repair and recombination protein RadA OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=radA PE=3 SV=1
Length = 333
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/313 (46%), Positives = 209/313 (66%), Gaps = 7/313 (2%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
VE+L+ GI + KLK+ G TV +A++ KEL +I G +E + +IIEAA K++ L
Sbjct: 27 VEELE--GIGRVTGAKLKERGYYTVRDIAFASVKELAEIIG-NEDRAQQIIEAARKMLGL 83
Query: 88 -GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146
F SA +++ +R +I +I++G R LD++L GG+ET ++TEI GEF SGKTQLCH L V
Sbjct: 84 HSFISALEVYERRKKIRRISTGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAVM 143
Query: 147 CQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRL 206
QLP ++GG KA+YID E TFRP+R++QIA GL+ L N+ YARAY++DHQ L
Sbjct: 144 VQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDSDQALHNIFYARAYSSDHQMIL 203
Query: 207 LLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAV 266
+ +A S++ + AL++VDS A +R++F GR L+ RQ L K + L +LAD + VAV
Sbjct: 204 VEQAKSIIKQHNVALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAV 263
Query: 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA 326
VITNQV+AQ D +F G ++P GGNI+AH +T RL LRK + RI K+ SP E
Sbjct: 264 VITNQVMAQPD---VFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEG 320
Query: 327 EARFQISAQGVAD 339
E F+I+ +G+ D
Sbjct: 321 EVSFRITEEGLVD 333
>sp|Q9UWR5|RADA_PYRIL DNA repair and recombination protein RadA OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2
Length = 330
Score = 271 bits (694), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 146/313 (46%), Positives = 209/313 (66%), Gaps = 7/313 (2%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
VE+L+ G+ + KLK+ G TV VA++ KEL +I G +E + +I+EAA K++ L
Sbjct: 24 VEELE--GVGRVTGAKLKERGFFTVRDVAFASVKELAEIVG-NEERAQQIVEAARKMLGL 80
Query: 88 -GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146
F SA +++ +R +I +I++G R LD++L GG+ET ++TE+ GEF SGKTQLCH L V
Sbjct: 81 HSFVSALEVYERRKKIRRISTGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVM 140
Query: 147 CQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRL 206
QLP ++GG KA+YID E TFRP+R++QIA GL+ L N+ YARAY++DHQ L
Sbjct: 141 VQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMIL 200
Query: 207 LLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAV 266
+ +A S++ + AL+IVDS A +R++F GR L+ RQ L K + L +LAD + VAV
Sbjct: 201 VDQAKSIIRQHNVALLIVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAV 260
Query: 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA 326
VITNQV+AQ D +F G ++P GGNI+AH +T RL LRK + RI K+ SP E
Sbjct: 261 VITNQVMAQPD---VFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEG 317
Query: 327 EARFQISAQGVAD 339
E F+I+ +G+ D
Sbjct: 318 EVSFRITEEGLVD 330
>sp|B1YC14|RADA_PYRNV DNA repair and recombination protein RadA OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=radA PE=3 SV=1
Length = 330
Score = 268 bits (685), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/313 (45%), Positives = 208/313 (66%), Gaps = 7/313 (2%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
VE+L+ G+ + KLK+ G TV VA++ KEL ++ G +E + +I+EAA K++ L
Sbjct: 24 VEELE--GVGRVTGAKLKERGFFTVRDVAFASVKELAEVVG-NEERALQIVEAARKMLGL 80
Query: 88 -GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146
F SA +++ +R I +I++G + LD++L GG+ET ++TE+ GEF SGKTQLCH L V
Sbjct: 81 HSFVSALEVYERRKTIRRISTGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVM 140
Query: 147 CQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRL 206
QLP ++GG KA+YID E TFRP+R++QIA GL+ L N+ YARAY++DHQ L
Sbjct: 141 VQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMIL 200
Query: 207 LLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAV 266
+ +A S++ + AL++VDS A +R++F GR L+ RQ L K + L +LAD + VAV
Sbjct: 201 VDQAKSIIKQNNVALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAV 260
Query: 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA 326
VITNQV+AQ D +F G ++P GGNI+AH +T RL LRK + RI K+ SP E
Sbjct: 261 VITNQVMAQPD---VFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEG 317
Query: 327 EARFQISAQGVAD 339
E F+I+ +G+ D
Sbjct: 318 EVSFRITEEGLVD 330
>sp|A4WN87|RADA_PYRAR DNA repair and recombination protein RadA OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3
SV=1
Length = 333
Score = 268 bits (684), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 144/313 (46%), Positives = 209/313 (66%), Gaps = 7/313 (2%)
Query: 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87
VE+L+ G+ + KLK+ G TV+ VA++ KEL +I G +E + +IIE+A K++ L
Sbjct: 27 VEELE--GVGKVTGAKLKEKGFYTVKDVAFASVKELAEIIG-NEERALQIIESARKMLGL 83
Query: 88 -GFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146
F SA +++ +R +I +I++G R LD++L GG+ET ++TE+ GEF SGKTQLCH L V
Sbjct: 84 HSFISALEVYERRKKIRRISTGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVM 143
Query: 147 CQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRL 206
QLP ++GG KA+YID E TFRP+R++Q+A GL+ L N+ YARAY++DHQ L
Sbjct: 144 VQLPEERGGLGAKAIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMIL 203
Query: 207 LLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAV 266
+ A S++ + AL++VDS A +R++F GR L+ RQ L K + L +LAD + VAV
Sbjct: 204 VEHAKSIVKQHNVALIVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAV 263
Query: 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA 326
VITNQV+AQ D +F G ++P GGNI+AH +T RL LRK + RI K+ SP E
Sbjct: 264 VITNQVMAQPD---VFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIVKIFDSPYHPEG 320
Query: 327 EARFQISAQGVAD 339
E F+I+ +G+ D
Sbjct: 321 EVSFRITEEGLID 333
>sp|O29269|RADA_ARCFU DNA repair and recombination protein RadA OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=radA PE=3 SV=1
Length = 337
Score = 261 bits (667), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 136/315 (43%), Positives = 208/315 (66%), Gaps = 11/315 (3%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLG-FTSAT 93
G+ +KL++AG T+E+VA + EL + GI+E KII+AA KL +G F S
Sbjct: 19 GVGPETARKLREAGYSTIEAVAVASPSELANVGGITEGNAVKIIQAARKLANIGGFESGD 78
Query: 94 QLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153
++ +R + +IT+GS++LD++L GGVET +ITE +GEF SGKTQ+CH L V QLP D+
Sbjct: 79 KVLERRRSVKKITTGSKDLDELLGGGVETQAITEFFGEFGSGKTQICHQLAVNVQLPEDE 138
Query: 154 GGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASM 213
GG EG + ID E TFRP+R++Q+A+ GL+G +VL+N+ A+AYN++HQ LL++ A
Sbjct: 139 GGLEGSVIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQM-LLVDNAKE 197
Query: 214 MVET------RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 267
+ E L+IVDS + +R ++ GRG L+ RQ L + L L K + + A+V
Sbjct: 198 LAEKLKKEGRPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNRHLHDLMKFGELYNAAIV 257
Query: 268 ITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAE 327
+TNQV+A+ D +F P KP+GG+I+AH +T R+ L+KG+ + RI ++I SP L E E
Sbjct: 258 VTNQVMARPD--VLFGDP-TKPVGGHIVAHTATFRIYLKKGKDDLRIARLIDSPHLPEGE 314
Query: 328 ARFQISAQGVADVKD 342
A F+++ +G+ D ++
Sbjct: 315 AIFRVTERGIEDAEE 329
>sp|O74036|RADA_PYRFU DNA repair and recombination protein RadA OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=radA
PE=1 SV=1
Length = 349
Score = 259 bits (661), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 205/311 (65%), Gaps = 9/311 (2%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLG-FTSAT 93
G+ +KL++AG T+E++A + EL ++ GISE KII+AA K LG F A
Sbjct: 42 GVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRAD 101
Query: 94 QLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153
+ +R I +I++GS+ LDK+L GG+ET +ITE++GEF SGKTQL HTL V QLP ++
Sbjct: 102 EYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161
Query: 154 GGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASM 213
GG G ++ID E TFRP+R+ +IA GL+ +VL+++ ARA+N++HQ L+ +A
Sbjct: 162 GGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 221
Query: 214 MVET-----RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVI 268
+ E L+IVDS T+ +R+++ GRG L+ RQ LAK L L +LA+ + +AV +
Sbjct: 222 IKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV 281
Query: 269 TNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEA 328
TNQV A+ D F G +PIGG+I+AH++T R+ LRKG+G +RI ++I +P L E EA
Sbjct: 282 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEA 338
Query: 329 RFQISAQGVAD 339
F I+ +G+ D
Sbjct: 339 VFSITEKGIED 349
>sp|Q9V233|RADA_PYRAB DNA repair and recombination protein RadA OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=radA PE=3 SV=2
Length = 353
Score = 258 bits (660), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 137/311 (44%), Positives = 206/311 (66%), Gaps = 9/311 (2%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLG-FTSAT 93
G+ +KL++AG T+E++A + EL ++ GISE KII+AA K LG F A
Sbjct: 46 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 105
Query: 94 QLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153
+ +R I +I++GS+ LDK+L GG+ET +ITE++GEF SGKTQL HTL V QLP ++
Sbjct: 106 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 165
Query: 154 GGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASM 213
GG G ++ID E TFRP+R+ +IA GL+ +VL+++ ARA+N++HQ L+ +A
Sbjct: 166 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 225
Query: 214 MVE-----TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVI 268
+ E L+IVDS T+ +R+++ GRG L+ RQ LAK L L +LA+ + +AV +
Sbjct: 226 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 285
Query: 269 TNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEA 328
TNQV A+ D F G +PIGG+I+AH++T R+ LRKG+G +R+ ++I +P L E EA
Sbjct: 286 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 342
Query: 329 RFQISAQGVAD 339
F+I+ +G+ D
Sbjct: 343 VFRITEKGIED 353
>sp|P0CW91|RADA_AERPX DNA repair and recombination protein RadA OS=Aeropyrum pernix
GN=radA PE=3 SV=1
Length = 319
Score = 258 bits (658), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 130/305 (42%), Positives = 197/305 (64%), Gaps = 3/305 (0%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
G+ +KL +AG T+E++A + +E+ Q GI KI++AA + + + F +A
Sbjct: 16 GVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNIDFKTAYD 75
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
L + + I +IT+GSR LD++L GG+ET +ITE++GEF SGKTQ+CH L V QLP D+G
Sbjct: 76 LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKG 135
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G EGKA+YID EGTFR +R+ Q+A GL+ +V++N+ + RA N+ HQ ++ + +M+
Sbjct: 136 GLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMV 195
Query: 215 VETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274
L++VDS T+ +R +F GR L+ RQ L + L L +LAD F VAVVITNQV+A
Sbjct: 196 KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 275 QVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISA 334
+ D +F G + +GG+++ HA R+ L+K RG +RI +V+ +P L E E F I+
Sbjct: 256 RPD---VFYGDPTQAVGGHVLGHAPGVRVYLKKSRGNKRIARVVDAPHLPEGETVFAITE 312
Query: 335 QGVAD 339
G+ D
Sbjct: 313 WGIRD 317
>sp|P0CW92|RADA_AERPE DNA repair and recombination protein RadA OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=radA PE=3 SV=1
Length = 319
Score = 257 bits (657), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 197/305 (64%), Gaps = 3/305 (0%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
G+ +KL +AG T+E++A + +E+ Q GI KI++AA + + + F +A
Sbjct: 16 GVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNIDFKTAYD 75
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
L + + I +IT+GSR LD++L GG+ET +ITE++GEF SGKTQ+CH L V QLP D+G
Sbjct: 76 LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKG 135
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G EGKA+Y+D EGTFR +R+ Q+A GL+ +V++N+ + RA N+ HQ ++ + +M+
Sbjct: 136 GLEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMV 195
Query: 215 VETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274
L++VDS T+ +R +F GR L+ RQ L + L L +LAD F VAVVITNQV+A
Sbjct: 196 KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 275 QVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISA 334
+ D +F G + +GG+++ HA R+ L+K RG +RI +V+ +P L E E F I+
Sbjct: 256 RPD---VFYGDPTQAVGGHVLGHAPGVRVYLKKSRGNKRIARVVDAPHLPEGETVFAITE 312
Query: 335 QGVAD 339
G+ D
Sbjct: 313 WGIRD 317
>sp|A8AB83|RADA_IGNH4 DNA repair and recombination protein RadA OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=radA PE=3
SV=1
Length = 327
Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 203/321 (63%), Gaps = 9/321 (2%)
Query: 27 PVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVP 86
P + G+ KL DAG T+E++A + +EL+ I GI KII AA +++
Sbjct: 11 PTSVAELPGVGPSTAAKLIDAGYGTIEALAVATPEELVAI-GIPLTTAQKIIRAARQMLD 69
Query: 87 LGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146
+ F +A ++ +R+ + +IT+GS+ LD +L GG+ET +ITE +GEF SGK+QLCH V
Sbjct: 70 IRFRTAKEVKLERMNLRKITTGSKNLDDLLGGGIETKTITEFFGEFGSGKSQLCHQASVN 129
Query: 147 CQLPLDQGG-GEG----KAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTD 201
QLPL+QGG EG KA+Y+D EGTFR +R+ Q+A GL+ V++N+ Y RA N+D
Sbjct: 130 VQLPLEQGGLSEGDKVAKAVYVDTEGTFRWERIEQMAKCLGLDPDQVMDNIYYIRAVNSD 189
Query: 202 HQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE 261
HQ ++ E +++ + L++VDS T+ +R ++ GR L+ RQ L K L L KLA+
Sbjct: 190 HQMAIVEELFNLVPKENVKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLGKLAEV 249
Query: 262 FGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSP 321
+ AV+ITNQV+A+ D +F G + +GG+++ HA R+ L+K RG +RI +V+ +P
Sbjct: 250 YNTAVIITNQVMARPD---VFYGDPTQAVGGHVLYHAPGVRVQLKKARGNKRIARVVDAP 306
Query: 322 CLAEAEARFQISAQGVADVKD 342
L EAEA F I+ G+ D +D
Sbjct: 307 HLPEAEAVFAITDCGIRDPED 327
>sp|B8D610|RADA_DESK1 DNA repair and recombination protein RadA OS=Desulfurococcus
kamchatkensis (strain 1221n / DSM 18924) GN=radA PE=3
SV=1
Length = 328
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 203/327 (62%), Gaps = 5/327 (1%)
Query: 13 QQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEA 72
+++E ++E G V + G + D KL+ AG + S+ + +EL + G+
Sbjct: 3 EEKETIKERSSGFISVRDIPGVGSSIAD--KLEAAGYLSAWSIVVARAEELAERTGLPVL 60
Query: 73 KVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEF 132
V KIIE A K++ + F +A ++ +RL I +IT+GS+ LD++L GGVET +ITE +GE+
Sbjct: 61 TVQKIIENARKMLGITFKTAREVKQERLNIGKITTGSKSLDELLGGGVETKTITEFFGEY 120
Query: 133 RSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENV 192
SGKTQ+CH L V QL ++GG G+A+YID EGTFR +R+ +A GL+ V++N+
Sbjct: 121 GSGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNI 180
Query: 193 AYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFL 252
Y RAYN+DHQ ++ E + + + L+I+DS T+ +R ++ GR L+ RQ L L
Sbjct: 181 YYMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKLNSHL 240
Query: 253 RSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEE 312
L +LA+ + VAVV+TNQV+A+ D +F G +GG+++AH R+ LRK +G +
Sbjct: 241 HQLMRLAEAYNVAVVVTNQVMARPD---VFYGDPTTAVGGHVLAHTPGVRIQLRKSKGNK 297
Query: 313 RICKVISSPCLAEAEARFQISAQGVAD 339
RI +V+ +P L E E F I+ +G+ D
Sbjct: 298 RIARVVDAPHLPEGEVVFVITEEGIRD 324
>sp|O93748|RADA_CENSY DNA repair and recombination protein RadA OS=Cenarchaeum symbiosum
(strain A) GN=radA PE=3 SV=2
Length = 398
Score = 244 bits (624), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 195/314 (62%), Gaps = 9/314 (2%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASK-LVPLG----- 88
G+ + KKL+D+G+ ++ + EL +I +S +KI+ A K L G
Sbjct: 13 GVGPVTKKKLEDSGVHSMMDLVVRGPVELGEISSMSSEICEKIVTIARKRLAETGAITKD 72
Query: 89 FTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQ 148
F S ++++ +R I IT+G+ LD +L GG+ET +ITE++GEF SGKTQ CHT+CVT Q
Sbjct: 73 FASGSEIYKRRQSIGMITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQ 132
Query: 149 LPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLL 208
P ++GG G MYID EGTFRP+R++ IA ++ A +L+ + ARAYN+ HQ +L
Sbjct: 133 KPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVARAYNSSHQVLILE 192
Query: 209 EAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVI 268
EA + E L+I DS T L+R+++ GRG L++RQ L +++R L ++A+ + AV+
Sbjct: 193 EAGKTIQEENIKLIISDSTTGLFRSEYLGRGTLASRQQKLGRYIRLLARIAETYNCAVLA 252
Query: 269 TNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEA 328
TNQV + D F G +P+GGN++ HAST R+ RKG +R+ K+I SP +EA
Sbjct: 253 TNQVSSSPDS---FFGDPTRPVGGNVVGHASTYRIYFRKGGKNKRVAKIIDSPHHPASEA 309
Query: 329 RFQISAQGVADVKD 342
F++ +GV D ++
Sbjct: 310 VFELGERGVQDTEE 323
>sp|Q9Y8J4|RADA_DESAM DNA repair and recombination protein RadA OS=Desulfurococcus
amylolyticus GN=radA PE=3 SV=1
Length = 328
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 202/327 (61%), Gaps = 5/327 (1%)
Query: 13 QQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEA 72
+++E ++E G V + G + D KL+ AG + S+ + +EL + G+
Sbjct: 3 EEKETIKERSSGFISVRDIPGVGSSIAD--KLEAAGYLSAWSIVVARAEELAERTGLPVL 60
Query: 73 KVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEF 132
V KIIE A K++ + F +A ++ +R I +IT+GS+ LD++L GGVET +ITE +GE+
Sbjct: 61 TVQKIIENARKMLGITFKTAREVKQERSNIGKITTGSKSLDELLGGGVETKTITEFFGEY 120
Query: 133 RSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENV 192
SGKTQ+CH L V QL ++GG G+A+YID EGTFR +R+ +A GL+ V++N+
Sbjct: 121 GSGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNI 180
Query: 193 AYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFL 252
Y RAYN+DHQ ++ E + + + L+I+DS T+ +R ++ GR L+ RQ L L
Sbjct: 181 YYMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKLNSHL 240
Query: 253 RSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEE 312
L +LA+ + VAVV+TNQV+A+ D +F G +GG+++AH R+ LRK +G +
Sbjct: 241 HQLMRLAEAYNVAVVVTNQVMARPD---VFYGDPTTAVGGHVLAHTPGVRIQLRKSKGNK 297
Query: 313 RICKVISSPCLAEAEARFQISAQGVAD 339
RI +V+ +P L E E F I+ +G+ D
Sbjct: 298 RIARVVDAPHLPEGEVVFVITEEGIRD 324
>sp|Q49593|RADA_METJA DNA repair and recombination protein RadA OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=radA PE=3 SV=1
Length = 352
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 203/318 (63%), Gaps = 13/318 (4%)
Query: 32 QASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTS 91
Q G+ +KLK+AG +A + EL +I GISE +IIEAA +L LGF S
Sbjct: 38 QLPGVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGISEKAAARIIEAARELCNLGFKS 97
Query: 92 ATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLP- 150
T++ +QR I ++++GS+ LD+IL GG+E+ S+TE G F SGKTQ+ H CV Q P
Sbjct: 98 GTEVLSQRKNIWKLSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQIAHQACVNLQCPE 157
Query: 151 --------LDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDH 202
D+ E KA+YID EGTFRP+R++Q+A+ GL+G +VL N+ ARAYN+D
Sbjct: 158 RIVADDAIKDEILNEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYNSDM 217
Query: 203 QSRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE 261
Q +++ E L+IVDS T+ +RT++ GRG+L+ RQ L + + +L KLAD
Sbjct: 218 QMLYAENVENLIREGHNIKLVIVDSLTSTFRTEYIGRGKLAERQQKLGRHMATLNKLADI 277
Query: 262 FGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSP 321
+ V++TNQV A+ D A+F GP + IGG+I+ HA+T R+ LRK +G++R+ K+ SP
Sbjct: 278 YNCVVIVTNQVAARPD--ALF-GPSEQAIGGHIVGHAATFRIFLRKAKGDKRVAKLYDSP 334
Query: 322 CLAEAEARFQISAQGVAD 339
L +AEA F+I+ +G+ D
Sbjct: 335 HLPDAEAMFRITEKGIHD 352
>sp|Q2NE95|RADA_METST DNA repair and recombination protein RadA OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=radA PE=3 SV=1
Length = 311
Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 199/300 (66%), Gaps = 6/300 (2%)
Query: 42 KKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLE 101
+KL+DAG + +A + KEL I E K+IEAA K + F +A ++ +R +
Sbjct: 16 QKLRDAGFADMMRLATATPKELSVKVEIGEGVAAKVIEAARKAEKIDFETAFEVMERRED 75
Query: 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAM 161
+ +IT+GS+ LD+++ GG+ET SITE+YGEF SGK+Q+ H L VT QLP+++GG +G+ +
Sbjct: 76 VGRITTGSKGLDELIGGGIETQSITEVYGEFGSGKSQISHELSVTTQLPVEEGGLDGEVV 135
Query: 162 YIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET--RF 219
+ID E TFRP+R+ QIA+ +GLN +VL+ + ARA+N+ HQ L+ + + ++++
Sbjct: 136 FIDTENTFRPERIEQIAEGFGLNIEEVLKKIHVARAFNSSHQI-LMADKINELIQSGVNI 194
Query: 220 ALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGS 279
L+I+DS A +R ++ GR L+ RQ L + L +LQ +A+ + VAV+ITNQV ++ D
Sbjct: 195 KLIIIDSLMAHFRAEYVGRESLATRQQKLNQHLHTLQTIANTYNVAVLITNQVQSKPDS- 253
Query: 280 AIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVAD 339
F G K +GG+++ HAST R+ L+KG +RI +++ SP L E E+ F+++ +G+ D
Sbjct: 254 --FFGTPTKAVGGHVLGHASTYRILLKKGLSGKRIARLVDSPHLPEGESVFKVTTEGLVD 311
>sp|Q74MX9|RADA_NANEQ DNA repair and recombination protein RadA OS=Nanoarchaeum equitans
(strain Kin4-M) GN=radA PE=3 SV=1
Length = 325
Score = 234 bits (596), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 198/307 (64%), Gaps = 3/307 (0%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAA-SKLVPLGFTSAT 93
G+ +KL AG ++ +A + +EL++ I EA KIIEAA +L L F +A
Sbjct: 18 GVGPKTAEKLISAGYDSLIKIASASVEELMEAADIGEATARKIIEAAMERLGLLEFKTAE 77
Query: 94 QLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153
++ +R + +IT+ S+ LD +L GG+ET ++TE YGE+ SGKTQ+ H L V QLP +Q
Sbjct: 78 EVLEERQKTARITTMSKNLDSLLGGGIETAALTEFYGEYGSGKTQVGHQLAVDVQLPPEQ 137
Query: 154 GGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASM 213
GG EGKA+YID EGTFRP+R+ Q+A+ L+ L+NV + + +NTDHQ +A +
Sbjct: 138 GGLEGKAVYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQMLAARKAEEL 197
Query: 214 MVETR-FALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272
+ + L++VDS TAL+R +++GRG+L+ RQ L + + L ++A+ + VA+ +TNQV
Sbjct: 198 IRKGEPIKLIVVDSLTALFRAEYTGRGQLAERQHKLGRHVHDLLRIAELYNVAIYVTNQV 257
Query: 273 VAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQI 332
+A+ D S I ++ +GG+++AHAST R+ LRKG+ RI +++ SP L E E F I
Sbjct: 258 MAKPD-SFIPGLDSVQAVGGHVLAHASTYRVFLRKGKKGIRIARLVDSPHLPERETTFVI 316
Query: 333 SAQGVAD 339
+ +G+ D
Sbjct: 317 TEEGIRD 323
>sp|Q55075|RADA_SULSO DNA repair and recombination protein RadA OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=radA PE=1 SV=2
Length = 324
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 193/309 (62%), Gaps = 4/309 (1%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
GI+ + KL +AG ++E++A + ++L GI + KII+ A + + F +A +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
+ +R+ + +I++GS+ LD +L GG+ET ++TE +GEF SGKTQLCH L V QLP ++G
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G GKA+YID EGTFR +R+ +A GL+ +V+ N+ Y RA NTDHQ ++ + ++
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 215 V-ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273
+ L++VDS T+ +R ++ GR L+ RQ L K L L +LA+ + +AV+ITNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQIS 333
A+ D +F G +GG+ + H R+ L+K RG RI +V+ +P L E E F ++
Sbjct: 259 ARPD---MFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALT 315
Query: 334 AQGVADVKD 342
+G+ D ++
Sbjct: 316 EEGIRDAEE 324
>sp|C3N7M8|RADA_SULIY DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=radA PE=3 SV=1
Length = 324
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 193/309 (62%), Gaps = 4/309 (1%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
GI+ + KL +AG ++E++A + ++L GI + KII+ A + + F +A +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
+ +R+ + +I++GS+ LD +L GG+ET ++TE +GEF SGKTQLCH L V QLP ++G
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G GKA+YID EGTFR +R+ +A GL+ +V+ N+ Y RA NTDHQ ++ + ++
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 215 V-ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273
+ L++VDS T+ +R ++ GR L+ RQ L K L L +LA+ + +AV+ITNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQIS 333
A+ D +F G +GG+ + H R+ L+K RG RI +V+ +P L E E F ++
Sbjct: 259 ARPD---MFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALT 315
Query: 334 AQGVADVKD 342
+G+ D ++
Sbjct: 316 EEGIRDAEE 324
>sp|C3NFU5|RADA_SULIN DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=radA PE=3 SV=1
Length = 324
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 193/309 (62%), Gaps = 4/309 (1%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
GI+ + KL +AG ++E++A + ++L GI + KII+ A + + F +A +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
+ +R+ + +I++GS+ LD +L GG+ET ++TE +GEF SGKTQLCH L V QLP ++G
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G GKA+YID EGTFR +R+ +A GL+ +V+ N+ Y RA NTDHQ ++ + ++
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 215 V-ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273
+ L++VDS T+ +R ++ GR L+ RQ L K L L +LA+ + +AV+ITNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQIS 333
A+ D +F G +GG+ + H R+ L+K RG RI +V+ +P L E E F ++
Sbjct: 259 ARPD---MFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALT 315
Query: 334 AQGVADVKD 342
+G+ D ++
Sbjct: 316 EEGIRDAEE 324
>sp|C3MY77|RADA_SULIM DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=radA PE=3 SV=1
Length = 324
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 193/309 (62%), Gaps = 4/309 (1%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
GI+ + KL +AG ++E++A + ++L GI + KII+ A + + F +A +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
+ +R+ + +I++GS+ LD +L GG+ET ++TE +GEF SGKTQLCH L V QLP ++G
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G GKA+YID EGTFR +R+ +A GL+ +V+ N+ Y RA NTDHQ ++ + ++
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 215 V-ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273
+ L++VDS T+ +R ++ GR L+ RQ L K L L +LA+ + +AV+ITNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQIS 333
A+ D +F G +GG+ + H R+ L+K RG RI +V+ +P L E E F ++
Sbjct: 259 ARPD---MFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALT 315
Query: 334 AQGVADVKD 342
+G+ D ++
Sbjct: 316 EEGIRDAEE 324
>sp|C3MRI1|RADA_SULIL DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=radA PE=3 SV=1
Length = 324
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 193/309 (62%), Gaps = 4/309 (1%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
GI+ + KL +AG ++E++A + ++L GI + KII+ A + + F +A +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
+ +R+ + +I++GS+ LD +L GG+ET ++TE +GEF SGKTQLCH L V QLP ++G
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G GKA+YID EGTFR +R+ +A GL+ +V+ N+ Y RA NTDHQ ++ + ++
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 215 V-ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273
+ L++VDS T+ +R ++ GR L+ RQ L K L L +LA+ + +AV+ITNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQIS 333
A+ D +F G +GG+ + H R+ L+K RG RI +V+ +P L E E F ++
Sbjct: 259 ARPD---MFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALT 315
Query: 334 AQGVADVKD 342
+G+ D ++
Sbjct: 316 EEGIRDAEE 324
>sp|C4KIT6|RADA_SULIK DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=radA PE=3 SV=1
Length = 324
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 193/309 (62%), Gaps = 4/309 (1%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
GI+ + KL +AG ++E++A + ++L GI + KII+ A + + F +A +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
+ +R+ + +I++GS+ LD +L GG+ET ++TE +GEF SGKTQLCH L V QLP ++G
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G GKA+YID EGTFR +R+ +A GL+ +V+ N+ Y RA NTDHQ ++ + ++
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 215 V-ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273
+ L++VDS T+ +R ++ GR L+ RQ L K L L +LA+ + +AV+ITNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQIS 333
A+ D +F G +GG+ + H R+ L+K RG RI +V+ +P L E E F ++
Sbjct: 259 ARPD---MFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALT 315
Query: 334 AQGVADVKD 342
+G+ D ++
Sbjct: 316 EEGIRDAEE 324
>sp|C3MZK6|RADA_SULIA DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.16.27) GN=radA PE=3 SV=1
Length = 324
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 193/309 (62%), Gaps = 4/309 (1%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94
GI+ + KL +AG ++E++A + ++L GI + KII+ A + + F +A +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154
+ +R+ + +I++GS+ LD +L GG+ET ++TE +GEF SGKTQLCH L V QLP ++G
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 155 GGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMM 214
G GKA+YID EGTFR +R+ +A GL+ +V+ N+ Y RA NTDHQ ++ + ++
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 215 V-ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273
+ L++VDS T+ +R ++ GR L+ RQ L K L L +LA+ + +AV+ITNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQIS 333
A+ D +F G +GG+ + H R+ L+K RG RI +V+ +P L E E F ++
Sbjct: 259 ARPD---MFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALT 315
Query: 334 AQGVADVKD 342
+G+ D ++
Sbjct: 316 EEGIRDAEE 324
>sp|Q6L126|RADA_PICTO DNA repair and recombination protein RadA OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=radA PE=3 SV=1
Length = 323
Score = 231 bits (590), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 183/306 (59%), Gaps = 4/306 (1%)
Query: 35 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLG-FTSAT 93
G+ +KL+++G + ++A + K+L +I GI+E KII AA K +G F +
Sbjct: 18 GVGDATAEKLRESGYDDIMTIAVASPKDLAEISGIAEGAAIKIINAARKYADVGNFETGE 77
Query: 94 QLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153
++ +R EI ++T+GS LD +L GG+ET SITE +GEF SGKTQ+ H L V +P+++
Sbjct: 78 EILNKRKEIKKLTTGSSNLDNLLGGGLETQSITEFFGEFGSGKTQIMHQLAVNATMPVEK 137
Query: 154 GGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASM 213
G + + ID E TFRP+R++Q+A L+ LE + ARAYN+ HQ L +AA M
Sbjct: 138 NGFDSDVLIIDTENTFRPERIIQMARAKDLDPDQTLERIHVARAYNSHHQILLAEKAADM 197
Query: 214 MVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273
E + L+IVDS T+ +R+++ GRG L+ RQ L + + L K + + +TNQV
Sbjct: 198 AREYKIRLLIVDSLTSHFRSEYVGRGSLAERQQLLNRHMHDLLKFGTIYNAVIAVTNQVS 257
Query: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQIS 333
A A+F G + PIGGNI+ H +T R+ LRK + +RI ++I SP L E E I+
Sbjct: 258 AN---PAVFFGDPMNPIGGNIVGHTATFRIYLRKAKAGKRIARLIDSPYLPEGETVITIT 314
Query: 334 AQGVAD 339
G+ D
Sbjct: 315 ESGITD 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,008,214
Number of Sequences: 539616
Number of extensions: 4784175
Number of successful extensions: 29741
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 635
Number of HSP's that attempted gapping in prelim test: 29114
Number of HSP's gapped (non-prelim): 988
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)