Query 019381
Match_columns 342
No_of_seqs 270 out of 3338
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 09:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03187 meiotic recombination 100.0 4E-59 8.8E-64 427.9 36.4 326 16-342 19-344 (344)
2 TIGR02238 recomb_DMC1 meiotic 100.0 1.1E-57 2.5E-62 416.1 34.8 313 28-340 1-313 (313)
3 PLN03186 DNA repair protein RA 100.0 2.5E-57 5.5E-62 416.7 34.7 341 2-342 2-342 (342)
4 PTZ00035 Rad51 protein; Provis 100.0 5.7E-57 1.2E-61 415.9 35.1 327 16-342 11-337 (337)
5 TIGR02239 recomb_RAD51 DNA rep 100.0 2.8E-54 6.1E-59 395.0 34.3 315 28-342 1-316 (316)
6 KOG1434 Meiotic recombination 100.0 1.8E-55 3.8E-60 372.8 18.6 315 28-342 20-335 (335)
7 PF08423 Rad51: Rad51; InterP 100.0 1.9E-51 4.2E-56 366.5 25.8 255 87-341 2-256 (256)
8 PRK04301 radA DNA repair and r 100.0 1.3E-47 2.8E-52 353.8 35.3 303 34-339 12-316 (317)
9 TIGR02236 recomb_radA DNA repa 100.0 2.7E-47 5.9E-52 351.2 34.9 303 34-339 5-310 (310)
10 cd01123 Rad51_DMC1_radA Rad51_ 100.0 3.9E-40 8.5E-45 292.3 26.5 234 105-338 1-235 (235)
11 COG0468 RecA RecA/RadA recombi 100.0 2.6E-36 5.6E-41 268.3 26.6 228 97-341 34-268 (279)
12 cd01393 recA_like RecA is a b 100.0 1.2E-36 2.6E-41 268.3 24.1 223 105-330 1-226 (226)
13 KOG1564 DNA repair protein RHP 100.0 8.2E-37 1.8E-41 262.9 20.5 285 51-340 31-351 (351)
14 PRK09361 radB DNA repair and r 100.0 6.4E-35 1.4E-39 257.1 25.0 221 103-340 3-224 (225)
15 cd01394 radB RadB. The archaea 100.0 8.7E-34 1.9E-38 248.7 24.7 217 105-338 1-218 (218)
16 TIGR02237 recomb_radB DNA repa 100.0 1.8E-32 4E-37 238.8 24.0 208 112-338 1-209 (209)
17 KOG1433 DNA repair protein RAD 100.0 2.1E-34 4.5E-39 259.7 9.4 313 15-341 11-323 (326)
18 cd00983 recA RecA is a bacter 100.0 5.2E-31 1.1E-35 239.6 21.5 221 100-340 31-267 (325)
19 COG1066 Sms Predicted ATP-depe 100.0 8.8E-31 1.9E-35 237.8 21.1 208 100-342 70-280 (456)
20 PRK09354 recA recombinase A; P 100.0 3E-30 6.6E-35 236.1 22.0 220 101-340 37-272 (349)
21 TIGR03878 thermo_KaiC_2 KaiC d 100.0 1.1E-29 2.5E-34 227.5 22.2 216 103-340 2-254 (259)
22 TIGR02012 tigrfam_recA protein 100.0 5E-30 1.1E-34 233.1 19.2 221 100-340 31-267 (321)
23 cd01121 Sms Sms (bacterial rad 100.0 2.3E-29 4.9E-34 234.8 21.8 207 101-341 60-269 (372)
24 PRK09519 recA DNA recombinatio 100.0 9.4E-29 2E-33 245.6 23.1 217 99-335 35-265 (790)
25 PRK11823 DNA repair protein Ra 100.0 8E-29 1.7E-33 237.2 21.9 208 101-342 58-268 (446)
26 TIGR00416 sms DNA repair prote 100.0 1.2E-28 2.5E-33 236.2 22.3 208 101-342 72-282 (454)
27 TIGR03877 thermo_KaiC_1 KaiC d 100.0 1.2E-27 2.5E-32 212.2 22.5 207 104-339 2-231 (237)
28 PRK04328 hypothetical protein; 100.0 1.2E-27 2.5E-32 213.4 22.4 208 103-339 3-233 (249)
29 PF06745 KaiC: KaiC; InterPro 100.0 1.5E-27 3.1E-32 210.4 17.8 207 105-339 1-222 (226)
30 PRK08760 replicative DNA helic 100.0 1.1E-26 2.4E-31 224.0 21.7 216 101-332 208-457 (476)
31 TIGR03600 phage_DnaB phage rep 100.0 9.3E-27 2E-31 223.3 21.1 211 102-330 174-419 (421)
32 PF00154 RecA: recA bacterial 99.9 3.4E-26 7.5E-31 207.3 21.5 219 100-338 29-263 (322)
33 PRK05595 replicative DNA helic 99.9 5.9E-26 1.3E-30 218.6 21.5 215 102-333 181-429 (444)
34 PHA02542 41 41 helicase; Provi 99.9 7.6E-26 1.6E-30 217.2 22.0 216 101-326 168-409 (473)
35 PRK09165 replicative DNA helic 99.9 5.2E-26 1.1E-30 220.6 20.9 222 101-331 196-476 (497)
36 PRK08006 replicative DNA helic 99.9 8.9E-26 1.9E-30 217.0 21.4 215 102-332 204-453 (471)
37 PRK05636 replicative DNA helic 99.9 9.9E-26 2.2E-30 218.0 21.4 215 102-332 245-492 (505)
38 PF03796 DnaB_C: DnaB-like hel 99.9 1.9E-25 4.1E-30 200.9 21.7 215 104-334 1-249 (259)
39 PRK07004 replicative DNA helic 99.9 8.4E-26 1.8E-30 217.3 20.4 215 102-332 193-441 (460)
40 PRK06321 replicative DNA helic 99.9 1.6E-25 3.5E-30 215.1 22.0 218 102-332 206-455 (472)
41 PRK06904 replicative DNA helic 99.9 1.3E-25 2.8E-30 216.2 21.2 215 102-332 201-452 (472)
42 TIGR03881 KaiC_arch_4 KaiC dom 99.9 3.1E-25 6.7E-30 196.0 21.8 206 104-338 1-226 (229)
43 PRK08840 replicative DNA helic 99.9 2.6E-25 5.5E-30 213.5 21.9 215 102-332 197-446 (464)
44 PRK08506 replicative DNA helic 99.9 9.1E-25 2E-29 210.9 24.3 213 102-331 172-440 (472)
45 PRK05748 replicative DNA helic 99.9 4E-25 8.7E-30 213.3 21.9 218 101-333 182-433 (448)
46 COG0305 DnaB Replicative DNA h 99.9 3.5E-25 7.5E-30 206.9 19.9 217 102-334 176-425 (435)
47 TIGR00665 DnaB replicative DNA 99.9 6.9E-25 1.5E-29 211.3 22.4 217 101-333 174-423 (434)
48 TIGR03880 KaiC_arch_3 KaiC dom 99.9 3.1E-24 6.7E-29 188.9 21.9 207 108-340 1-218 (224)
49 PRK06749 replicative DNA helic 99.9 3E-24 6.4E-29 204.6 22.9 215 101-332 165-417 (428)
50 PRK06067 flagellar accessory p 99.9 1.5E-24 3.2E-29 192.2 19.3 207 102-338 4-225 (234)
51 cd01122 GP4d_helicase GP4d_hel 99.9 1.8E-24 3.9E-29 195.9 19.7 219 103-333 11-262 (271)
52 TIGR02655 circ_KaiC circadian 99.9 2.2E-24 4.8E-29 209.5 21.0 212 102-339 242-461 (484)
53 cd00984 DnaB_C DnaB helicase C 99.9 3.9E-24 8.4E-29 190.5 20.1 209 111-331 2-239 (242)
54 PRK09302 circadian clock prote 99.9 1E-23 2.2E-28 206.9 21.7 213 101-338 9-237 (509)
55 PRK09302 circadian clock prote 99.9 1.3E-23 2.7E-28 206.2 21.5 211 102-338 252-470 (509)
56 TIGR02655 circ_KaiC circadian 99.9 2.2E-23 4.8E-28 202.6 21.2 209 104-338 2-227 (484)
57 PRK08533 flagellar accessory p 99.9 3.4E-21 7.4E-26 169.6 20.9 207 103-338 4-223 (230)
58 PRK05973 replicative DNA helic 99.9 5.3E-21 1.2E-25 167.2 16.7 207 61-306 15-222 (237)
59 PRK07773 replicative DNA helic 99.9 2E-21 4.4E-26 200.8 16.0 178 102-295 197-394 (886)
60 COG0467 RAD55 RecA-superfamily 99.9 3.6E-20 7.7E-25 166.7 19.7 210 103-340 3-233 (260)
61 COG2874 FlaH Predicted ATPases 99.8 7.9E-19 1.7E-23 147.2 15.8 205 104-338 9-228 (235)
62 PF13481 AAA_25: AAA domain; P 99.8 2.6E-19 5.6E-24 153.8 9.1 163 103-274 12-190 (193)
63 cd01124 KaiC KaiC is a circadi 99.8 5.1E-17 1.1E-21 138.8 18.4 174 125-326 1-186 (187)
64 cd01125 repA Hexameric Replica 99.7 3.1E-16 6.8E-21 139.3 17.6 202 123-337 1-236 (239)
65 KOG2373 Predicted mitochondria 99.6 9.6E-15 2.1E-19 130.3 10.9 216 106-337 257-491 (514)
66 cd01120 RecA-like_NTPases RecA 99.6 5.4E-14 1.2E-18 116.7 12.6 164 125-307 1-165 (165)
67 COG3598 RepA RecA-family ATPas 99.5 7.8E-14 1.7E-18 123.6 10.5 178 117-309 83-272 (402)
68 COG1126 GlnQ ABC-type polar am 99.5 8.7E-14 1.9E-18 117.4 9.1 144 110-274 16-197 (240)
69 KOG2859 DNA repair protein, me 99.5 1.3E-12 2.8E-17 109.7 14.2 154 120-273 35-210 (293)
70 COG1136 SalX ABC-type antimicr 99.4 5.8E-13 1.3E-17 115.0 7.6 160 109-308 18-218 (226)
71 COG1124 DppF ABC-type dipeptid 99.4 9.4E-12 2E-16 107.1 12.4 154 110-308 21-218 (252)
72 COG1120 FepC ABC-type cobalami 99.3 6.1E-12 1.3E-16 110.9 9.5 146 108-274 14-200 (258)
73 COG1135 AbcC ABC-type metal io 99.3 1.2E-11 2.6E-16 109.8 10.7 147 108-274 18-203 (339)
74 COG4619 ABC-type uncharacteriz 99.3 2.4E-11 5.1E-16 98.6 11.0 150 106-275 13-196 (223)
75 COG1127 Ttg2A ABC-type transpo 99.3 2.9E-11 6.2E-16 103.8 11.3 144 111-274 23-207 (263)
76 COG1125 OpuBA ABC-type proline 99.3 5.2E-11 1.1E-15 103.0 12.0 147 108-274 13-197 (309)
77 COG4608 AppF ABC-type oligopep 99.3 7.4E-11 1.6E-15 103.7 12.4 140 109-274 26-171 (268)
78 COG1131 CcmA ABC-type multidru 99.2 7.6E-11 1.7E-15 107.6 11.9 146 109-276 18-200 (293)
79 COG3842 PotA ABC-type spermidi 99.2 1.9E-11 4.1E-16 112.5 7.6 147 108-274 17-198 (352)
80 COG1122 CbiO ABC-type cobalt t 99.2 7.1E-11 1.5E-15 103.7 10.3 147 108-274 16-200 (235)
81 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 2.7E-11 5.8E-16 106.3 7.3 157 110-308 18-215 (254)
82 COG3638 ABC-type phosphate/pho 99.2 9E-11 2E-15 100.5 10.0 154 101-274 9-209 (258)
83 COG1116 TauB ABC-type nitrate/ 99.2 1.1E-10 2.3E-15 101.4 8.0 146 109-274 16-192 (248)
84 COG3845 ABC-type uncharacteriz 99.1 2.3E-10 4.9E-15 107.5 10.6 149 103-275 12-202 (501)
85 COG2884 FtsE Predicted ATPase 99.1 1.3E-10 2.8E-15 96.3 6.9 152 102-274 8-198 (223)
86 TIGR02314 ABC_MetN D-methionin 99.1 4.2E-10 9.2E-15 104.7 11.1 145 110-274 19-202 (343)
87 TIGR02315 ABC_phnC phosphonate 99.1 9.9E-10 2.1E-14 97.8 12.6 144 111-274 17-207 (243)
88 COG3839 MalK ABC-type sugar tr 99.1 9.8E-11 2.1E-15 107.2 5.8 144 111-274 18-195 (338)
89 COG0444 DppD ABC-type dipeptid 99.1 1.8E-09 3.9E-14 97.0 13.7 151 109-274 18-215 (316)
90 cd03261 ABC_Org_Solvent_Resist 99.1 8.1E-10 1.8E-14 97.8 11.4 144 111-274 15-198 (235)
91 COG0411 LivG ABC-type branched 99.1 1.2E-10 2.5E-15 100.5 5.4 149 107-275 15-212 (250)
92 cd03246 ABCC_Protease_Secretio 99.1 4.2E-10 9.2E-15 94.9 8.8 132 111-274 17-157 (173)
93 cd03298 ABC_ThiQ_thiamine_tran 99.1 4.2E-10 9E-15 98.0 8.8 46 217-274 145-190 (211)
94 TIGR00960 3a0501s02 Type II (G 99.1 7.9E-10 1.7E-14 96.6 10.5 143 111-274 18-199 (216)
95 PRK11153 metN DL-methionine tr 99.1 1E-09 2.3E-14 102.5 11.6 146 110-275 19-203 (343)
96 cd03256 ABC_PhnC_transporter A 99.1 1E-09 2.2E-14 97.5 11.0 46 217-274 161-206 (241)
97 cd03258 ABC_MetN_methionine_tr 99.1 1.5E-09 3.3E-14 96.0 11.5 144 111-274 20-202 (233)
98 COG1123 ATPase components of v 99.1 1.2E-09 2.5E-14 105.3 11.4 63 215-308 169-231 (539)
99 COG1118 CysA ABC-type sulfate/ 99.1 1E-09 2.2E-14 97.5 10.2 147 108-274 14-199 (345)
100 COG1117 PstB ABC-type phosphat 99.1 5.8E-10 1.3E-14 94.2 8.1 148 110-274 21-209 (253)
101 cd03216 ABC_Carb_Monos_I This 99.1 1.2E-09 2.7E-14 91.1 10.2 129 111-274 15-143 (163)
102 cd03229 ABC_Class3 This class 99.0 1.8E-09 3.8E-14 91.5 11.0 138 111-274 15-162 (178)
103 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.0 3.8E-10 8.3E-15 98.8 7.1 46 217-274 157-202 (218)
104 PRK13650 cbiO cobalt transport 99.0 1.4E-09 3E-14 98.9 11.0 143 111-274 22-202 (279)
105 cd03214 ABC_Iron-Siderophores_ 99.0 5.6E-09 1.2E-13 88.6 14.0 137 111-274 14-159 (180)
106 TIGR01184 ntrCD nitrate transp 99.0 1.2E-09 2.6E-14 96.5 10.1 46 217-274 131-176 (230)
107 COG1123 ATPase components of v 99.0 2.3E-09 5E-14 103.2 12.5 161 109-308 304-506 (539)
108 cd03259 ABC_Carb_Solutes_like 99.0 5.5E-10 1.2E-14 97.4 7.6 46 217-274 147-192 (213)
109 COG4586 ABC-type uncharacteriz 99.0 3.9E-09 8.4E-14 92.4 12.6 146 111-276 39-220 (325)
110 cd03230 ABC_DR_subfamily_A Thi 99.0 1.7E-09 3.8E-14 91.1 10.2 134 111-274 15-156 (173)
111 cd03292 ABC_FtsE_transporter F 99.0 3.7E-09 8E-14 92.2 12.6 48 111-166 16-63 (214)
112 cd03225 ABC_cobalt_CbiO_domain 99.0 2.2E-09 4.9E-14 93.4 11.1 45 217-274 151-195 (211)
113 PRK11650 ugpC glycerol-3-phosp 99.0 4.8E-10 1E-14 105.1 7.2 145 110-274 18-196 (356)
114 TIGR02211 LolD_lipo_ex lipopro 99.0 3.3E-09 7.3E-14 93.0 12.0 144 111-274 20-203 (221)
115 PRK13634 cbiO cobalt transport 99.0 1.7E-09 3.6E-14 98.9 10.4 46 217-274 162-207 (290)
116 PRK11432 fbpC ferric transport 99.0 5.9E-10 1.3E-14 104.2 7.5 145 111-275 21-199 (351)
117 PRK11308 dppF dipeptide transp 99.0 5.7E-09 1.2E-13 96.9 14.0 46 217-274 171-216 (327)
118 PRK10247 putative ABC transpor 99.0 8.6E-10 1.9E-14 97.0 8.1 145 110-274 21-199 (225)
119 PRK13537 nodulation ABC transp 99.0 1.9E-09 4.1E-14 99.2 10.7 145 109-276 20-201 (306)
120 TIGR01186 proV glycine betaine 99.0 2.9E-10 6.3E-15 106.5 5.4 145 111-275 8-192 (363)
121 PRK13647 cbiO cobalt transport 99.0 2.4E-09 5.1E-14 97.1 10.9 143 110-274 19-199 (274)
122 TIGR02673 FtsE cell division A 99.0 2.1E-09 4.6E-14 93.7 10.3 42 110-154 16-57 (214)
123 TIGR01188 drrA daunorubicin re 99.0 2.9E-09 6.4E-14 97.9 11.6 141 111-275 8-186 (302)
124 PRK10584 putative ABC transpor 99.0 1.1E-09 2.3E-14 96.6 8.4 46 217-274 163-208 (228)
125 COG4598 HisP ABC-type histidin 99.0 6.6E-09 1.4E-13 85.5 12.2 136 119-274 28-213 (256)
126 PRK11629 lolD lipoprotein tran 99.0 2.9E-09 6.4E-14 94.2 11.2 145 110-274 23-207 (233)
127 PRK14250 phosphate ABC transpo 99.0 1.7E-09 3.6E-14 96.3 9.6 46 217-274 148-193 (241)
128 PRK11144 modC molybdate transp 99.0 6.9E-10 1.5E-14 104.1 7.4 46 217-274 145-190 (352)
129 cd03223 ABCD_peroxisomal_ALDP 99.0 1.1E-09 2.5E-14 91.6 8.0 128 111-274 16-149 (166)
130 PRK10908 cell division protein 99.0 6E-09 1.3E-13 91.4 12.9 49 110-166 16-64 (222)
131 cd03268 ABC_BcrA_bacitracin_re 99.0 3E-09 6.6E-14 92.4 10.9 140 111-274 15-187 (208)
132 cd03238 ABC_UvrA The excision 99.0 6.1E-09 1.3E-13 87.8 12.3 131 111-274 10-150 (176)
133 COG3840 ThiQ ABC-type thiamine 99.0 7E-09 1.5E-13 85.6 12.1 137 119-274 21-191 (231)
134 PRK09452 potA putrescine/sperm 99.0 6.8E-10 1.5E-14 104.6 7.2 145 111-275 29-207 (375)
135 PRK09544 znuC high-affinity zi 99.0 1.4E-09 3E-14 97.3 8.9 147 111-275 19-183 (251)
136 PRK13635 cbiO cobalt transport 99.0 2.3E-09 5E-14 97.4 10.2 144 110-274 21-202 (279)
137 PRK13636 cbiO cobalt transport 99.0 4.9E-09 1.1E-13 95.5 12.3 146 109-274 19-203 (283)
138 PRK13536 nodulation factor exp 99.0 4.3E-09 9.3E-14 98.1 12.1 42 110-154 55-96 (340)
139 PRK10851 sulfate/thiosulfate t 99.0 1.1E-09 2.5E-14 102.5 8.2 144 111-274 17-198 (353)
140 TIGR03608 L_ocin_972_ABC putat 99.0 2.3E-09 4.9E-14 93.0 9.4 45 217-274 151-195 (206)
141 PRK13633 cobalt transporter AT 99.0 3.5E-09 7.6E-14 96.3 10.9 145 110-274 24-206 (280)
142 TIGR03265 PhnT2 putative 2-ami 99.0 9.7E-10 2.1E-14 102.9 7.4 145 111-275 19-197 (353)
143 COG4555 NatA ABC-type Na+ tran 99.0 2.7E-09 5.8E-14 89.4 9.1 55 104-166 10-64 (245)
144 PRK10575 iron-hydroxamate tran 99.0 2.8E-09 6.2E-14 96.1 10.1 46 217-274 164-209 (265)
145 COG4175 ProV ABC-type proline/ 99.0 4.2E-09 9E-14 94.0 10.8 142 113-274 45-226 (386)
146 TIGR01166 cbiO cobalt transpor 99.0 3E-09 6.6E-14 91.0 9.8 41 111-154 7-47 (190)
147 PRK13652 cbiO cobalt transport 99.0 4E-09 8.8E-14 95.7 11.0 141 111-274 19-199 (277)
148 cd03301 ABC_MalK_N The N-termi 99.0 1.4E-09 3E-14 94.8 7.6 46 217-274 147-192 (213)
149 COG2274 SunT ABC-type bacterio 99.0 2.6E-09 5.7E-14 107.6 10.4 142 110-274 487-669 (709)
150 cd03219 ABC_Mj1267_LivG_branch 99.0 1.1E-09 2.5E-14 96.9 7.1 41 111-154 15-55 (236)
151 PRK11300 livG leucine/isoleuci 99.0 3.3E-09 7.1E-14 95.1 10.0 46 217-274 170-215 (255)
152 cd03262 ABC_HisP_GlnQ_permease 99.0 8.9E-09 1.9E-13 89.7 12.5 41 111-154 15-55 (213)
153 TIGR01277 thiQ thiamine ABC tr 99.0 1.8E-09 3.9E-14 94.2 8.0 46 217-274 145-190 (213)
154 PRK13646 cbiO cobalt transport 99.0 3.3E-09 7E-14 96.8 10.0 145 110-274 21-207 (286)
155 cd03293 ABC_NrtD_SsuB_transpor 99.0 9.3E-10 2E-14 96.5 6.1 146 111-274 19-193 (220)
156 cd03235 ABC_Metallic_Cations A 99.0 1.9E-09 4.2E-14 94.0 8.0 45 217-274 149-193 (213)
157 cd03226 ABC_cobalt_CbiO_domain 99.0 1.5E-09 3.3E-14 94.0 7.3 41 111-154 15-55 (205)
158 cd03294 ABC_Pro_Gly_Bertaine T 99.0 2.2E-09 4.7E-14 97.1 8.6 46 217-274 177-222 (269)
159 cd03222 ABC_RNaseL_inhibitor T 99.0 9.6E-09 2.1E-13 86.7 11.8 113 119-274 21-133 (177)
160 PRK13651 cobalt transporter AT 99.0 5.4E-09 1.2E-13 96.1 11.1 42 110-154 21-62 (305)
161 PRK13548 hmuV hemin importer A 99.0 6E-09 1.3E-13 93.6 11.2 46 217-274 157-202 (258)
162 PRK11607 potG putrescine trans 99.0 1.2E-09 2.5E-14 103.2 6.9 145 111-275 34-212 (377)
163 PRK13637 cbiO cobalt transport 99.0 5.3E-09 1.1E-13 95.5 11.0 46 217-274 161-206 (287)
164 PRK10771 thiQ thiamine transpo 99.0 2.9E-09 6.3E-14 94.1 9.0 46 217-274 146-191 (232)
165 cd03224 ABC_TM1139_LivF_branch 99.0 2.4E-09 5.2E-14 94.0 8.4 45 217-274 149-193 (222)
166 cd03218 ABC_YhbG The ABC trans 99.0 5.6E-09 1.2E-13 92.3 10.8 41 111-154 15-55 (232)
167 cd03228 ABCC_MRP_Like The MRP 99.0 5.9E-09 1.3E-13 87.7 10.4 133 111-274 17-156 (171)
168 PRK11000 maltose/maltodextrin 99.0 1.6E-09 3.5E-14 102.1 7.7 46 217-274 150-195 (369)
169 PRK11247 ssuB aliphatic sulfon 99.0 1.6E-09 3.4E-14 97.3 7.2 46 217-274 150-195 (257)
170 TIGR03410 urea_trans_UrtE urea 98.9 3E-09 6.4E-14 93.9 8.8 144 111-274 15-193 (230)
171 cd03265 ABC_DrrA DrrA is the A 98.9 1.1E-08 2.4E-13 89.7 12.3 46 217-274 148-193 (220)
172 PRK13648 cbiO cobalt transport 98.9 5.6E-09 1.2E-13 94.4 10.7 46 217-274 159-204 (269)
173 cd03237 ABC_RNaseL_inhibitor_d 98.9 1.9E-08 4E-13 89.7 13.9 140 118-274 20-177 (246)
174 PRK13640 cbiO cobalt transport 98.9 3.6E-09 7.7E-14 96.3 9.5 146 111-274 22-205 (282)
175 PRK11831 putative ABC transpor 98.9 4.4E-09 9.4E-14 95.1 9.8 46 217-274 160-205 (269)
176 cd03232 ABC_PDR_domain2 The pl 98.9 1.6E-09 3.4E-14 93.0 6.5 137 111-274 22-169 (192)
177 cd03296 ABC_CysA_sulfate_impor 98.9 3E-09 6.4E-14 94.5 8.5 46 217-274 153-198 (239)
178 PRK13539 cytochrome c biogenes 98.9 8.7E-09 1.9E-13 89.5 11.2 143 111-275 17-189 (207)
179 PRK13538 cytochrome c biogenes 98.9 2.4E-09 5.3E-14 92.7 7.7 41 111-154 16-56 (204)
180 cd03266 ABC_NatA_sodium_export 98.9 2.5E-09 5.4E-14 93.6 7.8 41 111-154 20-60 (218)
181 cd03247 ABCC_cytochrome_bd The 98.9 2.2E-09 4.8E-14 90.9 7.2 135 111-274 17-158 (178)
182 COG4604 CeuD ABC-type enteroch 98.9 7.3E-09 1.6E-13 86.5 10.0 143 111-273 16-196 (252)
183 cd03231 ABC_CcmA_heme_exporter 98.9 8.3E-09 1.8E-13 89.2 10.9 141 111-274 15-186 (201)
184 cd03269 ABC_putative_ATPase Th 98.9 1.8E-09 3.9E-14 93.9 6.7 41 111-154 15-55 (210)
185 cd03215 ABC_Carb_Monos_II This 98.9 7.5E-09 1.6E-13 88.0 10.4 138 111-274 15-165 (182)
186 PRK10253 iron-enterobactin tra 98.9 5.9E-09 1.3E-13 94.1 10.3 46 217-274 160-205 (265)
187 TIGR03258 PhnT 2-aminoethylpho 98.9 1.8E-09 4E-14 101.3 7.2 145 111-275 20-201 (362)
188 TIGR02868 CydC thiol reductant 98.9 4E-09 8.6E-14 104.6 10.0 138 111-272 350-528 (529)
189 PRK13642 cbiO cobalt transport 98.9 4.9E-09 1.1E-13 95.2 9.8 143 111-274 22-202 (277)
190 PRK09536 btuD corrinoid ABC tr 98.9 3.1E-09 6.7E-14 100.9 8.7 144 110-275 17-201 (402)
191 TIGR02982 heterocyst_DevA ABC 98.9 5.7E-09 1.2E-13 91.5 9.7 144 111-274 20-203 (220)
192 COG1129 MglA ABC-type sugar tr 98.9 6.9E-09 1.5E-13 99.3 10.9 141 107-274 19-206 (500)
193 TIGR01288 nodI ATP-binding ABC 98.9 6.8E-09 1.5E-13 95.5 10.6 41 111-154 19-59 (303)
194 PRK13644 cbiO cobalt transport 98.9 5.6E-09 1.2E-13 94.6 9.8 143 111-274 17-197 (274)
195 PRK10895 lipopolysaccharide AB 98.9 1.1E-08 2.3E-13 91.0 11.3 41 111-154 18-58 (241)
196 cd03213 ABCG_EPDR ABCG transpo 98.9 2.4E-09 5.2E-14 92.0 6.8 136 110-273 23-171 (194)
197 PRK13540 cytochrome c biogenes 98.9 1.1E-08 2.3E-13 88.4 10.7 144 111-277 16-191 (200)
198 COG0410 LivF ABC-type branched 98.9 7.8E-09 1.7E-13 88.6 9.6 140 112-274 19-198 (237)
199 cd03244 ABCC_MRP_domain2 Domai 98.9 8.9E-09 1.9E-13 90.3 10.4 42 110-154 18-59 (221)
200 PRK11176 lipid transporter ATP 98.9 6.5E-09 1.4E-13 104.3 10.6 142 110-274 357-540 (582)
201 PRK11248 tauB taurine transpor 98.9 1.6E-08 3.5E-13 90.7 12.0 46 217-274 145-190 (255)
202 PRK11614 livF leucine/isoleuci 98.9 1.1E-08 2.4E-13 90.7 10.9 41 111-154 20-60 (237)
203 PRK09984 phosphonate/organopho 98.9 3.5E-09 7.7E-14 95.4 7.8 46 217-274 169-214 (262)
204 PRK13632 cbiO cobalt transport 98.9 7.5E-09 1.6E-13 93.7 9.9 142 110-274 23-204 (271)
205 TIGR03005 ectoine_ehuA ectoine 98.9 7.2E-09 1.6E-13 92.8 9.6 46 217-274 163-208 (252)
206 cd03295 ABC_OpuCA_Osmoprotecti 98.9 4.3E-08 9.3E-13 87.2 14.4 46 217-274 152-197 (242)
207 TIGR03864 PQQ_ABC_ATP ABC tran 98.9 1.9E-08 4E-13 89.2 11.9 46 217-274 149-194 (236)
208 PRK13645 cbiO cobalt transport 98.9 1.1E-08 2.5E-13 93.4 10.9 46 217-274 167-212 (289)
209 cd03267 ABC_NatA_like Similar 98.9 1.6E-08 3.4E-13 89.7 11.5 46 217-274 170-215 (236)
210 TIGR02142 modC_ABC molybdenum 98.9 3.4E-09 7.4E-14 99.5 7.6 47 217-275 148-194 (354)
211 TIGR03873 F420-0_ABC_ATP propo 98.9 1.1E-08 2.3E-13 91.9 10.4 41 111-154 16-56 (256)
212 cd03250 ABCC_MRP_domain1 Domai 98.9 3E-09 6.6E-14 92.1 6.6 41 111-154 20-60 (204)
213 PRK15079 oligopeptide ABC tran 98.9 1.5E-08 3.2E-13 94.2 11.6 145 110-274 35-223 (331)
214 PRK09473 oppD oligopeptide tra 98.9 1.9E-08 4.1E-13 93.5 12.1 46 217-274 178-223 (330)
215 PRK11022 dppD dipeptide transp 98.9 2.7E-08 5.9E-13 92.3 13.0 46 217-274 170-215 (326)
216 PRK11264 putative amino-acid A 98.9 2.5E-08 5.5E-13 89.1 12.3 40 111-153 18-57 (250)
217 PRK13643 cbiO cobalt transport 98.9 1.3E-08 2.7E-13 93.0 10.5 42 110-154 20-61 (288)
218 PRK15112 antimicrobial peptide 98.9 6E-09 1.3E-13 94.1 8.3 46 217-274 166-211 (267)
219 PRK13631 cbiO cobalt transport 98.9 1E-08 2.2E-13 94.9 10.0 48 110-165 40-87 (320)
220 PRK13649 cbiO cobalt transport 98.9 7.8E-09 1.7E-13 94.0 9.0 42 110-154 21-62 (280)
221 PRK13638 cbiO cobalt transport 98.9 2.2E-08 4.7E-13 90.7 11.7 41 111-154 16-56 (271)
222 PRK09493 glnQ glutamine ABC tr 98.9 7.9E-09 1.7E-13 91.8 8.7 47 111-165 16-62 (240)
223 PRK13641 cbiO cobalt transport 98.9 1.6E-08 3.4E-13 92.3 10.8 42 110-154 21-62 (287)
224 TIGR03797 NHPM_micro_ABC2 NHPM 98.9 7.6E-09 1.6E-13 105.7 9.7 138 110-274 467-646 (686)
225 COG4618 ArpD ABC-type protease 98.9 1.3E-08 2.7E-13 96.2 10.2 142 111-274 351-533 (580)
226 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.9 1.6E-08 3.4E-13 89.0 10.3 45 217-274 159-203 (224)
227 cd03297 ABC_ModC_molybdenum_tr 98.9 4.2E-09 9E-14 91.9 6.6 46 217-274 148-193 (214)
228 COG4181 Predicted ABC-type tra 98.9 2.8E-09 6E-14 87.0 5.0 137 119-274 32-208 (228)
229 PRK13541 cytochrome c biogenes 98.9 7.6E-09 1.6E-13 89.0 8.0 34 119-154 22-55 (195)
230 PRK10418 nikD nickel transport 98.9 8.2E-08 1.8E-12 86.1 15.1 46 217-274 157-202 (254)
231 PRK10790 putative multidrug tr 98.9 1E-08 2.2E-13 103.0 10.2 140 110-274 355-536 (592)
232 PRK11174 cysteine/glutathione 98.9 1.1E-08 2.5E-13 102.6 10.4 139 110-274 364-545 (588)
233 cd03369 ABCC_NFT1 Domain 2 of 98.9 1.5E-08 3.2E-13 88.0 9.8 140 110-274 22-185 (207)
234 PRK13547 hmuV hemin importer A 98.9 2.4E-08 5.3E-13 90.3 11.4 46 217-274 171-216 (272)
235 cd00267 ABC_ATPase ABC (ATP-bi 98.9 6.2E-08 1.3E-12 80.2 13.0 127 112-274 15-141 (157)
236 cd03257 ABC_NikE_OppD_transpor 98.9 3.9E-08 8.4E-13 86.6 12.5 46 217-274 162-207 (228)
237 COG4172 ABC-type uncharacteriz 98.9 3E-08 6.4E-13 91.3 11.8 140 111-274 302-488 (534)
238 PRK10070 glycine betaine trans 98.9 2.4E-08 5.2E-13 94.8 11.7 144 111-274 43-226 (400)
239 TIGR03415 ABC_choXWV_ATP choli 98.9 2.8E-08 6E-13 93.7 12.0 143 112-274 40-226 (382)
240 PRK13639 cbiO cobalt transport 98.8 1.9E-08 4.1E-13 91.2 10.6 143 111-274 17-198 (275)
241 cd03217 ABC_FeS_Assembly ABC-t 98.8 1.6E-08 3.4E-13 87.4 9.6 140 111-274 15-165 (200)
242 COG4988 CydD ABC-type transpor 98.8 2.6E-08 5.6E-13 95.9 11.8 148 104-273 329-515 (559)
243 TIGR02769 nickel_nikE nickel i 98.8 2.3E-08 5E-13 90.2 11.0 46 217-274 167-212 (265)
244 TIGR02323 CP_lyasePhnK phospho 98.8 8.5E-08 1.8E-12 85.9 14.6 46 217-274 165-210 (253)
245 TIGR03411 urea_trans_UrtD urea 98.8 1.8E-08 3.8E-13 89.7 10.1 41 111-154 17-57 (242)
246 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 6.1E-08 1.3E-12 79.1 12.4 114 111-274 15-128 (144)
247 cd03252 ABCC_Hemolysin The ABC 98.8 2E-08 4.3E-13 89.1 10.2 41 111-154 17-57 (237)
248 PRK10938 putative molybdenum t 98.8 2.7E-08 5.8E-13 97.7 12.1 140 110-274 17-196 (490)
249 PRK10619 histidine/lysine/argi 98.8 2.6E-08 5.7E-13 89.4 11.1 48 111-166 20-67 (257)
250 COG1134 TagH ABC-type polysacc 98.8 1.2E-08 2.6E-13 88.2 8.4 163 109-308 40-223 (249)
251 cd03254 ABCC_Glucan_exporter_l 98.8 8.8E-09 1.9E-13 90.8 7.8 48 111-166 18-65 (229)
252 TIGR00968 3a0106s01 sulfate AB 98.8 6.9E-09 1.5E-13 92.0 7.1 46 217-274 147-192 (237)
253 TIGR03740 galliderm_ABC gallid 98.8 6E-08 1.3E-12 85.2 13.0 40 112-154 16-55 (223)
254 cd03299 ABC_ModC_like Archeal 98.8 7E-09 1.5E-13 91.9 7.1 46 217-274 146-191 (235)
255 cd03260 ABC_PstB_phosphate_tra 98.8 2.2E-08 4.8E-13 88.2 10.2 33 111-144 15-47 (227)
256 TIGR03375 type_I_sec_LssB type 98.8 1.5E-08 3.2E-13 103.7 10.4 139 111-274 480-661 (694)
257 PRK13543 cytochrome c biogenes 98.8 7.8E-09 1.7E-13 90.3 7.2 41 111-154 26-66 (214)
258 PRK15093 antimicrobial peptide 98.8 8.5E-08 1.9E-12 89.2 14.6 46 217-274 175-220 (330)
259 PRK10762 D-ribose transporter 98.8 1.8E-08 3.9E-13 99.2 10.6 42 110-154 18-59 (501)
260 COG4615 PvdE ABC-type sideroph 98.8 6.1E-08 1.3E-12 89.0 12.9 138 119-277 345-513 (546)
261 PRK03695 vitamin B12-transport 98.8 3E-08 6.5E-13 88.6 10.9 32 112-144 12-43 (248)
262 PRK15439 autoinducer 2 ABC tra 98.8 2.3E-08 5E-13 98.6 11.1 143 111-274 26-201 (510)
263 cd03253 ABCC_ATM1_transporter 98.8 2.2E-08 4.8E-13 88.7 10.0 41 111-154 16-56 (236)
264 cd03251 ABCC_MsbA MsbA is an e 98.8 2.3E-08 5.1E-13 88.4 10.1 48 111-166 17-64 (234)
265 cd03263 ABC_subfamily_A The AB 98.8 5.4E-08 1.2E-12 85.2 12.3 41 111-154 17-57 (220)
266 PRK09700 D-allose transporter 98.8 1.8E-08 3.8E-13 99.5 10.0 45 217-274 426-470 (510)
267 TIGR03771 anch_rpt_ABC anchore 98.8 1.2E-08 2.6E-13 89.6 8.0 45 217-274 130-174 (223)
268 TIGR03522 GldA_ABC_ATP gliding 98.8 4.1E-08 8.8E-13 90.3 11.6 41 111-154 17-57 (301)
269 PRK11701 phnK phosphonate C-P 98.8 4.9E-08 1.1E-12 87.7 11.9 46 217-274 168-213 (258)
270 PRK11124 artP arginine transpo 98.8 2.5E-08 5.4E-13 88.7 9.9 48 111-166 17-64 (242)
271 PRK04296 thymidine kinase; Pro 98.8 3E-08 6.5E-13 84.9 10.0 141 122-309 1-143 (190)
272 PRK10261 glutathione transport 98.8 3.2E-08 6.8E-13 99.8 11.7 46 217-274 480-525 (623)
273 cd03245 ABCC_bacteriocin_expor 98.8 1.2E-08 2.6E-13 89.4 7.6 40 111-153 19-58 (220)
274 TIGR01193 bacteriocin_ABC ABC- 98.8 1.8E-08 3.9E-13 103.3 10.1 139 110-274 488-670 (708)
275 TIGR01189 ccmA heme ABC export 98.8 1.1E-07 2.3E-12 82.0 13.4 41 111-154 15-55 (198)
276 cd03289 ABCC_CFTR2 The CFTR su 98.8 2.6E-08 5.5E-13 90.2 9.9 34 111-145 19-52 (275)
277 PRK11231 fecE iron-dicitrate t 98.8 2.1E-08 4.6E-13 89.9 9.4 41 111-154 17-57 (255)
278 cd03300 ABC_PotA_N PotA is an 98.8 6.6E-08 1.4E-12 85.5 12.2 46 217-274 147-192 (232)
279 cd03290 ABCC_SUR1_N The SUR do 98.8 1.8E-08 4E-13 88.1 8.5 42 110-154 15-56 (218)
280 TIGR02770 nickel_nikD nickel i 98.8 1.4E-07 3.1E-12 83.2 14.3 46 217-274 142-187 (230)
281 PRK13657 cyclic beta-1,2-gluca 98.8 1.9E-08 4.2E-13 101.0 9.8 139 111-274 350-531 (588)
282 PRK10419 nikE nickel transport 98.8 1.2E-07 2.6E-12 85.7 14.1 46 217-274 168-213 (268)
283 COG4152 ABC-type uncharacteriz 98.8 2.7E-08 5.8E-13 85.9 9.1 147 111-277 17-194 (300)
284 TIGR02203 MsbA_lipidA lipid A 98.8 2.3E-08 5.1E-13 100.0 10.2 139 111-274 347-529 (571)
285 COG4107 PhnK ABC-type phosphon 98.8 7E-08 1.5E-12 79.1 10.9 45 217-273 168-212 (258)
286 PRK09700 D-allose transporter 98.8 2.2E-08 4.7E-13 98.8 9.6 144 111-275 20-207 (510)
287 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.8 1.7E-08 3.8E-13 89.5 8.1 42 110-154 17-58 (238)
288 cd03264 ABC_drug_resistance_li 98.8 4.6E-08 9.9E-13 85.2 10.5 40 111-154 15-54 (211)
289 TIGR03796 NHPM_micro_ABC1 NHPM 98.8 2.2E-08 4.7E-13 102.8 9.8 140 110-274 493-673 (710)
290 cd03233 ABC_PDR_domain1 The pl 98.8 6.1E-08 1.3E-12 83.8 10.8 137 111-272 22-179 (202)
291 PF13479 AAA_24: AAA domain 98.8 1.7E-07 3.8E-12 81.6 13.6 168 123-320 3-191 (213)
292 PRK14249 phosphate ABC transpo 98.8 2.8E-08 6E-13 88.9 8.6 39 111-152 19-57 (251)
293 TIGR00972 3a0107s01c2 phosphat 98.8 3.1E-08 6.7E-13 88.4 8.9 38 111-151 16-53 (247)
294 TIGR02204 MsbA_rel ABC transpo 98.8 4E-08 8.7E-13 98.5 10.6 137 111-274 355-536 (576)
295 TIGR02857 CydD thiol reductant 98.8 3E-08 6.6E-13 98.3 9.6 139 111-274 337-518 (529)
296 TIGR02324 CP_lyasePhnL phospho 98.8 1.4E-07 2.9E-12 83.0 12.8 41 111-154 23-63 (224)
297 PRK10982 galactose/methyl gala 98.8 5.2E-08 1.1E-12 95.7 11.1 41 111-154 13-53 (491)
298 PRK10261 glutathione transport 98.8 9.1E-08 2E-12 96.5 13.0 46 217-274 185-230 (623)
299 cd03248 ABCC_TAP TAP, the Tran 98.8 2.7E-08 5.9E-13 87.5 8.2 42 110-154 28-69 (226)
300 COG4148 ModC ABC-type molybdat 98.8 3E-08 6.5E-13 87.1 8.1 143 119-276 20-192 (352)
301 PF07088 GvpD: GvpD gas vesicl 98.7 2.2E-07 4.8E-12 85.3 13.9 183 119-334 6-207 (484)
302 PRK11288 araG L-arabinose tran 98.7 5.2E-08 1.1E-12 95.9 10.6 41 111-154 19-59 (501)
303 PRK15056 manganese/iron transp 98.7 2.6E-08 5.7E-13 90.2 7.8 42 110-154 21-62 (272)
304 TIGR01842 type_I_sec_PrtD type 98.7 6.2E-08 1.3E-12 96.4 11.1 42 110-154 332-373 (544)
305 PF05621 TniB: Bacterial TniB 98.7 1.6E-07 3.4E-12 84.5 12.5 124 125-270 63-187 (302)
306 PRK14235 phosphate transporter 98.7 2.6E-08 5.7E-13 89.9 7.7 34 111-145 34-67 (267)
307 PRK13549 xylose transporter AT 98.7 3.5E-08 7.7E-13 97.2 9.3 38 110-150 19-56 (506)
308 PRK11288 araG L-arabinose tran 98.7 6.6E-08 1.4E-12 95.2 11.0 45 217-274 413-457 (501)
309 PRK13409 putative ATPase RIL; 98.7 2.3E-08 5E-13 99.8 7.8 139 119-274 361-515 (590)
310 smart00382 AAA ATPases associa 98.7 1.4E-07 3E-12 75.4 10.9 124 123-272 2-125 (148)
311 cd03236 ABC_RNaseL_inhibitor_d 98.7 2.8E-07 6E-12 82.6 13.9 41 110-154 15-55 (255)
312 PRK11160 cysteine/glutathione 98.7 5.9E-08 1.3E-12 97.1 10.5 137 111-274 355-535 (574)
313 PRK15134 microcin C ABC transp 98.7 4.8E-08 1E-12 96.8 9.7 46 217-274 442-487 (529)
314 PF13401 AAA_22: AAA domain; P 98.7 2.4E-08 5.1E-13 79.8 6.1 123 121-272 2-125 (131)
315 COG0396 sufC Cysteine desulfur 98.7 1.3E-07 2.8E-12 81.1 10.8 43 119-166 26-68 (251)
316 PRK10789 putative multidrug tr 98.7 7.1E-08 1.5E-12 96.4 10.8 48 111-166 330-377 (569)
317 TIGR01192 chvA glucan exporter 98.7 6.9E-08 1.5E-12 96.8 10.6 48 111-166 350-397 (585)
318 PRK13546 teichoic acids export 98.7 6.1E-08 1.3E-12 87.3 9.3 42 110-154 38-79 (264)
319 TIGR03269 met_CoM_red_A2 methy 98.7 8.7E-08 1.9E-12 94.8 11.1 46 217-274 444-489 (520)
320 TIGR00958 3a01208 Conjugate Tr 98.7 5E-08 1.1E-12 100.0 9.6 49 110-166 495-543 (711)
321 TIGR03269 met_CoM_red_A2 methy 98.7 1.4E-07 3E-12 93.4 12.5 47 217-275 185-231 (520)
322 PRK14271 phosphate ABC transpo 98.7 1.6E-07 3.5E-12 85.2 11.9 34 110-144 35-68 (276)
323 PRK14242 phosphate transporter 98.7 3.5E-08 7.6E-13 88.4 7.3 34 111-145 21-54 (253)
324 PRK13545 tagH teichoic acids e 98.7 8E-08 1.7E-12 93.1 10.2 41 111-154 39-79 (549)
325 TIGR01846 type_I_sec_HlyB type 98.7 9.1E-08 2E-12 97.9 11.1 139 111-274 472-653 (694)
326 PRK14269 phosphate ABC transpo 98.7 3.2E-08 7E-13 88.3 6.9 33 111-144 17-49 (246)
327 PRK10636 putative ABC transpor 98.7 2.5E-07 5.4E-12 93.5 13.8 142 111-274 327-488 (638)
328 TIGR01978 sufC FeS assembly AT 98.7 4.3E-07 9.4E-12 80.7 13.9 45 217-274 161-205 (243)
329 PRK14259 phosphate ABC transpo 98.7 5.8E-08 1.3E-12 87.8 8.3 33 111-144 28-60 (269)
330 PRK10522 multidrug transporter 98.7 3E-07 6.4E-12 91.6 14.1 41 111-154 338-378 (547)
331 cd00544 CobU Adenosylcobinamid 98.7 1.5E-07 3.4E-12 78.7 10.0 89 125-235 1-90 (169)
332 PLN03130 ABC transporter C fam 98.7 5E-08 1.1E-12 107.4 9.0 140 110-274 1253-1434(1622)
333 cd03234 ABCG_White The White s 98.7 3.2E-08 7E-13 87.1 6.1 34 110-144 21-54 (226)
334 KOG0058 Peptide exporter, ABC 98.7 1.4E-07 3E-12 92.8 11.0 140 110-276 482-666 (716)
335 PRK10762 D-ribose transporter 98.7 1.3E-07 2.8E-12 93.2 11.0 45 217-274 412-456 (501)
336 PRK15064 ABC transporter ATP-b 98.7 3.5E-07 7.5E-12 90.8 14.1 42 110-154 15-56 (530)
337 PRK14273 phosphate ABC transpo 98.7 7.3E-08 1.6E-12 86.4 8.4 33 111-144 22-54 (254)
338 cd03288 ABCC_SUR2 The SUR doma 98.7 7.5E-08 1.6E-12 86.5 8.5 41 111-154 36-76 (257)
339 TIGR02633 xylG D-xylose ABC tr 98.7 7.2E-08 1.6E-12 94.9 9.1 45 217-274 420-464 (500)
340 PRK15134 microcin C ABC transp 98.7 3.6E-07 7.9E-12 90.6 14.0 47 217-275 173-219 (529)
341 PLN03232 ABC transporter C fam 98.7 5.9E-08 1.3E-12 106.5 9.1 140 110-274 1250-1431(1495)
342 PRK13549 xylose transporter AT 98.7 9.7E-08 2.1E-12 94.1 9.8 45 217-274 422-466 (506)
343 TIGR02633 xylG D-xylose ABC tr 98.7 1E-07 2.2E-12 93.8 9.8 38 110-150 15-52 (500)
344 COG1132 MdlB ABC-type multidru 98.7 1.6E-07 3.4E-12 94.0 11.0 140 110-274 343-525 (567)
345 PRK15439 autoinducer 2 ABC tra 98.7 8.8E-08 1.9E-12 94.5 9.1 45 217-274 420-464 (510)
346 PRK11147 ABC transporter ATPas 98.6 6E-07 1.3E-11 90.9 15.2 41 111-154 334-374 (635)
347 PRK10636 putative ABC transpor 98.6 4.5E-07 9.8E-12 91.7 14.3 42 110-154 15-56 (638)
348 COG4167 SapF ABC-type antimicr 98.6 5.5E-07 1.2E-11 74.5 12.0 155 113-308 30-226 (267)
349 COG4987 CydC ABC-type transpor 98.6 1.7E-07 3.6E-12 89.3 10.2 146 110-277 352-537 (573)
350 PRK14253 phosphate ABC transpo 98.6 2.7E-07 5.8E-12 82.5 11.1 34 111-145 18-51 (249)
351 PRK14247 phosphate ABC transpo 98.6 9.3E-08 2E-12 85.5 8.1 33 111-144 18-50 (250)
352 PRK14263 phosphate ABC transpo 98.6 6.7E-08 1.4E-12 87.0 7.2 33 111-144 23-55 (261)
353 PTZ00265 multidrug resistance 98.6 1.5E-07 3.2E-12 102.8 11.1 47 110-164 399-445 (1466)
354 PRK14240 phosphate transporter 98.6 7.5E-08 1.6E-12 86.1 7.5 34 111-145 18-51 (250)
355 PRK14268 phosphate ABC transpo 98.6 1.1E-07 2.4E-12 85.4 8.6 33 111-144 27-59 (258)
356 PRK14270 phosphate ABC transpo 98.6 1.1E-07 2.3E-12 85.1 8.5 33 111-144 19-51 (251)
357 TIGR01618 phage_P_loop phage n 98.6 1E-06 2.3E-11 76.5 14.2 163 123-320 12-196 (220)
358 PRK10982 galactose/methyl gala 98.6 2E-07 4.3E-12 91.6 10.9 60 216-307 407-466 (491)
359 PRK14267 phosphate ABC transpo 98.6 9.4E-08 2E-12 85.6 7.9 34 110-144 18-51 (253)
360 COG0488 Uup ATPase components 98.6 2.9E-07 6.3E-12 90.1 11.9 58 110-170 17-78 (530)
361 PRK09580 sufC cysteine desulfu 98.6 1.6E-07 3.5E-12 83.8 9.4 33 111-144 16-48 (248)
362 COG0488 Uup ATPase components 98.6 4.6E-07 1E-11 88.7 13.2 138 112-274 338-497 (530)
363 PRK10744 pstB phosphate transp 98.6 8.5E-08 1.8E-12 86.3 7.6 35 110-145 27-61 (260)
364 PRK14274 phosphate ABC transpo 98.6 1.4E-07 3E-12 84.8 8.9 34 111-145 27-60 (259)
365 COG4172 ABC-type uncharacteriz 98.6 5E-07 1.1E-11 83.3 12.3 48 213-272 170-217 (534)
366 cd03291 ABCC_CFTR1 The CFTR su 98.6 1.3E-07 2.8E-12 85.9 8.4 42 110-154 51-92 (282)
367 PRK14245 phosphate ABC transpo 98.6 9.8E-08 2.1E-12 85.3 7.6 33 112-145 19-51 (250)
368 COG4525 TauB ABC-type taurine 98.6 9.8E-07 2.1E-11 73.9 12.8 145 110-274 19-194 (259)
369 PRK14265 phosphate ABC transpo 98.6 1.1E-07 2.4E-12 86.2 8.0 33 111-144 35-67 (274)
370 CHL00131 ycf16 sulfate ABC tra 98.6 7.7E-07 1.7E-11 79.6 13.4 34 111-145 22-55 (252)
371 PRK14258 phosphate ABC transpo 98.6 1.4E-07 3.1E-12 84.8 8.5 46 217-274 167-212 (261)
372 PTZ00265 multidrug resistance 98.6 1.2E-07 2.6E-12 103.4 9.5 36 110-146 1182-1217(1466)
373 PRK14238 phosphate transporter 98.6 1.5E-07 3.3E-12 85.2 8.3 34 111-145 39-72 (271)
374 PRK14261 phosphate ABC transpo 98.6 1.6E-07 3.4E-12 84.2 8.3 33 111-144 21-53 (253)
375 PTZ00243 ABC transporter; Prov 98.6 1.2E-07 2.7E-12 104.1 9.1 140 111-274 1325-1506(1560)
376 PRK14244 phosphate ABC transpo 98.6 9.1E-08 2E-12 85.6 6.7 34 111-145 20-53 (251)
377 PRK14248 phosphate ABC transpo 98.6 2E-07 4.2E-12 84.3 8.8 34 111-145 36-69 (268)
378 TIGR01194 cyc_pep_trnsptr cycl 98.6 3.9E-07 8.4E-12 90.9 11.7 48 111-166 357-404 (555)
379 PRK14275 phosphate ABC transpo 98.6 1.4E-07 3E-12 86.1 7.9 35 110-145 53-87 (286)
380 KOG0061 Transporter, ABC super 98.6 1.7E-07 3.6E-12 93.9 9.0 45 217-274 187-231 (613)
381 PRK15064 ABC transporter ATP-b 98.6 1.2E-06 2.6E-11 86.9 15.0 41 111-154 334-374 (530)
382 TIGR00957 MRP_assoc_pro multi 98.6 1.5E-07 3.3E-12 103.4 9.5 139 111-274 1301-1481(1522)
383 PLN03073 ABC transporter F fam 98.6 1.1E-06 2.3E-11 89.7 14.7 41 111-154 524-564 (718)
384 PRK14252 phosphate ABC transpo 98.6 4.8E-07 1E-11 81.6 10.8 33 111-144 31-63 (265)
385 COG4133 CcmA ABC-type transpor 98.6 5E-07 1.1E-11 75.1 9.8 138 119-276 24-193 (209)
386 PRK14264 phosphate ABC transpo 98.6 1.2E-07 2.5E-12 87.4 6.8 34 110-144 59-92 (305)
387 cd03270 ABC_UvrA_I The excisio 98.6 1.6E-06 3.4E-11 76.4 13.7 31 109-140 8-38 (226)
388 PRK14254 phosphate ABC transpo 98.6 6.8E-08 1.5E-12 88.0 5.2 33 111-144 54-86 (285)
389 PRK13409 putative ATPase RIL; 98.6 1.1E-06 2.3E-11 87.9 14.0 46 217-276 229-274 (590)
390 PRK14251 phosphate ABC transpo 98.6 1.2E-07 2.5E-12 84.9 6.4 34 111-145 19-52 (251)
391 PRK14239 phosphate transporter 98.6 1.9E-07 4.1E-12 83.6 7.7 33 111-144 20-52 (252)
392 COG1245 Predicted ATPase, RNas 98.6 1.4E-06 3E-11 81.6 13.4 138 118-273 362-516 (591)
393 PRK11147 ABC transporter ATPas 98.6 6.7E-07 1.5E-11 90.5 12.5 42 110-154 17-58 (635)
394 PRK14262 phosphate ABC transpo 98.6 2.1E-07 4.7E-12 83.1 7.9 33 111-144 18-50 (250)
395 PRK14243 phosphate transporter 98.6 2.5E-07 5.4E-12 83.4 8.4 34 111-145 25-58 (264)
396 TIGR01257 rim_protein retinal- 98.5 4.7E-07 1E-11 100.3 11.9 145 109-276 1952-2133(2272)
397 PRK14272 phosphate ABC transpo 98.5 2.1E-07 4.5E-12 83.3 7.7 33 111-144 19-51 (252)
398 TIGR01187 potA spermidine/putr 98.5 1.2E-07 2.6E-12 88.1 6.3 46 217-274 117-162 (325)
399 PRK14266 phosphate ABC transpo 98.5 3.4E-07 7.3E-12 81.8 9.1 34 111-145 18-51 (250)
400 KOG0057 Mitochondrial Fe/S clu 98.5 4.5E-07 9.7E-12 86.6 9.9 140 111-274 367-547 (591)
401 PRK10938 putative molybdenum t 98.5 5.7E-07 1.2E-11 88.4 11.1 46 217-274 418-463 (490)
402 PRK14236 phosphate transporter 98.5 2.4E-07 5.1E-12 83.9 7.8 33 111-144 40-72 (272)
403 cd03283 ABC_MutS-like MutS-lik 98.5 1.3E-06 2.7E-11 75.4 11.8 28 120-147 22-49 (199)
404 PRK14237 phosphate transporter 98.5 2E-07 4.4E-12 84.1 7.1 35 110-145 34-68 (267)
405 COG4559 ABC-type hemin transpo 98.5 1.1E-06 2.5E-11 74.4 10.9 39 107-146 12-50 (259)
406 PRK11819 putative ABC transpor 98.5 2E-06 4.3E-11 85.8 14.8 55 109-166 20-78 (556)
407 KOG0055 Multidrug/pheromone ex 98.5 6.2E-07 1.3E-11 93.4 10.9 115 110-233 367-522 (1228)
408 TIGR00954 3a01203 Peroxysomal 98.5 1.8E-07 3.8E-12 95.0 6.8 42 110-154 466-507 (659)
409 TIGR01271 CFTR_protein cystic 98.5 2.7E-07 5.9E-12 101.3 8.7 139 110-274 1233-1413(1490)
410 PRK14256 phosphate ABC transpo 98.5 3.3E-07 7E-12 82.1 7.6 34 111-145 19-52 (252)
411 PF00004 AAA: ATPase family as 98.5 9E-07 2E-11 70.5 9.4 113 126-276 1-115 (132)
412 PRK14246 phosphate ABC transpo 98.5 7.8E-07 1.7E-11 79.9 9.9 40 111-153 25-64 (257)
413 PRK15177 Vi polysaccharide exp 98.5 1.8E-06 3.8E-11 75.3 11.6 34 119-154 9-42 (213)
414 PRK05800 cobU adenosylcobinami 98.5 1.3E-06 2.8E-11 73.2 10.2 91 124-234 2-92 (170)
415 COG4178 ABC-type uncharacteriz 98.5 1.5E-06 3.4E-11 85.1 12.1 147 106-274 403-575 (604)
416 PRK14241 phosphate transporter 98.5 7.2E-07 1.6E-11 80.1 9.2 35 110-145 18-52 (258)
417 cd03271 ABC_UvrA_II The excisi 98.5 3.4E-06 7.4E-11 75.5 13.3 26 119-144 17-42 (261)
418 KOG0056 Heavy metal exporter H 98.5 2E-06 4.4E-11 81.1 12.1 151 102-274 544-735 (790)
419 PRK14260 phosphate ABC transpo 98.5 3.2E-07 6.9E-12 82.5 6.7 34 111-145 22-55 (259)
420 PRK14257 phosphate ABC transpo 98.5 6.7E-07 1.4E-11 83.1 9.0 34 111-145 97-130 (329)
421 PRK14255 phosphate ABC transpo 98.5 2.5E-07 5.4E-12 82.8 5.8 34 111-145 20-53 (252)
422 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 3.3E-06 7.2E-11 84.2 14.4 42 110-154 19-60 (552)
423 COG4161 ArtP ABC-type arginine 98.5 1.9E-06 4E-11 70.0 10.0 136 119-274 24-202 (242)
424 COG4136 ABC-type uncharacteriz 98.4 2.7E-06 5.8E-11 68.3 10.6 28 119-146 24-51 (213)
425 KOG0055 Multidrug/pheromone ex 98.4 1.7E-06 3.7E-11 90.2 11.9 142 110-274 1004-1186(1228)
426 COG1101 PhnK ABC-type uncharac 98.4 2.9E-06 6.4E-11 72.1 11.0 143 112-274 22-210 (263)
427 PLN03073 ABC transporter F fam 98.4 2.4E-06 5.3E-11 87.1 12.7 53 110-166 191-243 (718)
428 PLN03211 ABC transporter G-25; 98.4 1.9E-06 4E-11 87.3 11.6 45 217-274 223-267 (659)
429 cd03280 ABC_MutS2 MutS2 homolo 98.4 3.8E-07 8.2E-12 78.7 5.4 28 120-147 24-52 (200)
430 cd03278 ABC_SMC_barmotin Barmo 98.4 2.8E-06 6.1E-11 73.1 10.7 44 217-274 134-177 (197)
431 PRK11819 putative ABC transpor 98.4 6.2E-06 1.3E-10 82.3 14.4 41 111-154 339-379 (556)
432 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 5.6E-06 1.2E-10 82.6 14.0 41 111-154 337-377 (552)
433 COG4674 Uncharacterized ABC-ty 98.4 6.6E-07 1.4E-11 74.9 6.1 51 107-165 16-66 (249)
434 cd03243 ABC_MutS_homologs The 98.4 7.5E-07 1.6E-11 77.0 6.3 26 122-147 28-53 (202)
435 COG1119 ModF ABC-type molybden 98.4 6.4E-06 1.4E-10 71.5 11.8 38 106-144 41-78 (257)
436 TIGR01257 rim_protein retinal- 98.4 1.4E-06 3.1E-11 96.7 9.7 143 109-275 943-1122(2272)
437 cd03227 ABC_Class2 ABC-type Cl 98.3 5.6E-06 1.2E-10 68.9 11.0 44 218-274 99-142 (162)
438 TIGR00955 3a01204 The Eye Pigm 98.3 1.2E-06 2.7E-11 88.3 8.0 34 110-144 39-72 (617)
439 COG1137 YhbG ABC-type (unclass 98.3 6.5E-07 1.4E-11 75.2 4.9 135 119-274 26-200 (243)
440 PRK12726 flagellar biosynthesi 98.3 3.2E-05 7E-10 72.1 16.3 93 120-230 203-297 (407)
441 PRK10535 macrolide transporter 98.3 4.5E-06 9.8E-11 84.7 11.6 48 111-166 23-70 (648)
442 cd03115 SRP The signal recogni 98.3 1.9E-05 4.2E-10 66.3 13.5 90 125-230 2-94 (173)
443 PF00448 SRP54: SRP54-type pro 98.3 1.3E-05 2.7E-10 68.9 12.1 91 124-230 2-95 (196)
444 TIGR02858 spore_III_AA stage I 98.3 7E-06 1.5E-10 73.9 10.9 118 124-274 112-230 (270)
445 cd03272 ABC_SMC3_euk Eukaryoti 98.3 3.1E-05 6.8E-10 68.8 15.0 43 217-273 179-221 (243)
446 PLN03232 ABC transporter C fam 98.3 5.8E-06 1.3E-10 91.1 12.2 145 111-274 632-801 (1495)
447 cd00009 AAA The AAA+ (ATPases 98.3 4.4E-06 9.5E-11 67.2 8.7 40 122-167 18-57 (151)
448 PF00005 ABC_tran: ABC transpo 98.3 3.2E-07 6.8E-12 74.0 1.7 40 119-165 7-46 (137)
449 KOG0054 Multidrug resistance-a 98.3 4.2E-06 9.1E-11 89.1 10.2 139 111-274 1155-1335(1381)
450 COG3854 SpoIIIAA ncharacterize 98.3 5.2E-06 1.1E-10 71.3 8.7 159 121-321 134-295 (308)
451 COG2401 ABC-type ATPase fused 98.3 3.1E-06 6.8E-11 78.4 7.9 48 215-274 522-569 (593)
452 TIGR01271 CFTR_protein cystic 98.2 2.2E-06 4.8E-11 94.2 8.2 52 112-166 442-495 (1490)
453 PLN03140 ABC transporter G fam 98.2 3E-06 6.5E-11 92.5 8.9 45 217-274 1036-1080(1470)
454 TIGR00956 3a01205 Pleiotropic 98.2 3.3E-06 7.2E-11 92.2 9.2 35 110-145 777-811 (1394)
455 PRK10416 signal recognition pa 98.2 3E-05 6.5E-10 71.6 13.6 94 121-231 112-209 (318)
456 cd03275 ABC_SMC1_euk Eukaryoti 98.2 5.8E-05 1.3E-09 67.3 15.1 59 218-309 177-235 (247)
457 PLN03130 ABC transporter C fam 98.2 3E-06 6.4E-11 93.7 7.9 145 111-274 632-801 (1622)
458 TIGR00957 MRP_assoc_pro multi 98.2 3.1E-06 6.7E-11 93.4 8.0 53 111-166 653-707 (1522)
459 KOG0062 ATPase component of AB 98.2 5.5E-06 1.2E-10 78.7 8.3 42 217-274 215-256 (582)
460 COG1222 RPT1 ATP-dependent 26S 98.2 1E-05 2.2E-10 73.8 9.6 118 119-272 181-299 (406)
461 TIGR00956 3a01205 Pleiotropic 98.2 3E-06 6.6E-11 92.5 7.5 45 217-273 226-270 (1394)
462 TIGR00064 ftsY signal recognit 98.2 3.4E-05 7.4E-10 69.7 13.1 92 121-231 70-167 (272)
463 KOG0733 Nuclear AAA ATPase (VC 98.2 7.1E-06 1.5E-10 79.4 8.9 118 119-274 219-338 (802)
464 PTZ00454 26S protease regulato 98.2 1.9E-05 4.1E-10 75.1 11.7 122 119-276 175-297 (398)
465 cd03279 ABC_sbcCD SbcCD and ot 98.2 3E-05 6.4E-10 67.6 11.9 44 218-274 151-194 (213)
466 cd03276 ABC_SMC6_euk Eukaryoti 98.2 4.3E-05 9.4E-10 65.8 12.8 47 216-274 129-177 (198)
467 PF13173 AAA_14: AAA domain 98.2 1.4E-05 3E-10 63.8 9.0 98 123-274 2-100 (128)
468 PLN03140 ABC transporter G fam 98.2 1.7E-05 3.7E-10 86.8 12.2 37 107-144 176-212 (1470)
469 KOG0744 AAA+-type ATPase [Post 98.1 7.1E-06 1.5E-10 73.7 7.3 136 119-278 173-312 (423)
470 cd03240 ABC_Rad50 The catalyti 98.1 6.4E-06 1.4E-10 71.3 7.0 46 217-274 138-184 (204)
471 PRK12724 flagellar biosynthesi 98.1 1.7E-05 3.8E-10 74.9 10.2 89 119-229 219-310 (432)
472 cd03282 ABC_MSH4_euk MutS4 hom 98.1 1.4E-05 3.1E-10 69.0 8.7 31 119-149 25-55 (204)
473 TIGR03015 pepcterm_ATPase puta 98.1 4E-05 8.6E-10 69.1 12.0 95 119-230 38-135 (269)
474 TIGR01425 SRP54_euk signal rec 98.1 0.00013 2.8E-09 69.6 15.5 92 123-230 100-194 (429)
475 PRK14974 cell division protein 98.1 4.6E-05 1E-09 70.7 12.2 94 122-231 139-235 (336)
476 KOG0733 Nuclear AAA ATPase (VC 98.1 2E-05 4.3E-10 76.3 9.9 123 110-272 534-656 (802)
477 cd03285 ABC_MSH2_euk MutS2 hom 98.1 4.7E-06 1E-10 73.0 5.2 30 119-148 26-55 (222)
478 KOG0060 Long-chain acyl-CoA tr 98.1 6.1E-05 1.3E-09 72.7 13.0 147 106-274 444-628 (659)
479 cd03273 ABC_SMC2_euk Eukaryoti 98.1 6.8E-05 1.5E-09 67.1 12.7 43 217-273 187-229 (251)
480 cd03239 ABC_SMC_head The struc 98.1 6.3E-05 1.4E-09 63.6 11.8 45 217-274 115-159 (178)
481 PRK14722 flhF flagellar biosyn 98.1 8.3E-05 1.8E-09 69.8 13.6 61 119-184 133-196 (374)
482 PRK10867 signal recognition pa 98.1 6.3E-05 1.4E-09 72.0 13.1 92 123-230 100-195 (433)
483 COG3910 Predicted ATPase [Gene 98.1 0.0001 2.3E-09 61.5 12.3 44 217-273 145-188 (233)
484 cd03284 ABC_MutS1 MutS1 homolo 98.0 1.3E-05 2.8E-10 70.0 7.2 25 124-148 31-55 (216)
485 PF01695 IstB_IS21: IstB-like 98.0 7.5E-06 1.6E-10 69.2 5.5 40 121-166 45-84 (178)
486 cd01131 PilT Pilus retraction 98.0 2.9E-05 6.2E-10 66.9 9.2 24 124-147 2-25 (198)
487 KOG0065 Pleiotropic drug resis 98.0 2.6E-05 5.5E-10 81.9 10.0 33 111-144 806-838 (1391)
488 TIGR03689 pup_AAA proteasome A 98.0 4.3E-05 9.4E-10 74.5 11.0 131 119-272 212-342 (512)
489 COG4778 PhnL ABC-type phosphon 98.0 3.6E-05 7.8E-10 63.2 8.7 39 109-148 24-62 (235)
490 cd03287 ABC_MSH3_euk MutS3 hom 98.0 1.5E-05 3.4E-10 69.6 7.0 31 119-149 27-57 (222)
491 PRK11889 flhF flagellar biosyn 98.0 0.00014 3.1E-09 68.1 13.5 90 123-231 241-333 (436)
492 PRK00771 signal recognition pa 98.0 0.00014 2.9E-09 69.9 13.8 91 122-230 94-187 (437)
493 PRK07721 fliI flagellum-specif 98.0 0.00012 2.6E-09 70.3 13.5 118 102-232 139-262 (438)
494 smart00534 MUTSac ATPase domai 98.0 7.3E-06 1.6E-10 69.8 4.6 46 217-274 77-123 (185)
495 KOG0736 Peroxisome assembly fa 98.0 4.3E-05 9.2E-10 75.9 10.3 123 114-274 696-820 (953)
496 PTZ00243 ABC transporter; Prov 98.0 1.3E-05 2.8E-10 88.6 7.6 53 111-166 675-729 (1560)
497 KOG0066 eIF2-interacting prote 98.0 9E-05 2E-09 69.4 11.9 149 104-274 591-762 (807)
498 PRK05703 flhF flagellar biosyn 98.0 4.5E-05 9.8E-10 73.2 10.2 88 122-230 220-311 (424)
499 TIGR03499 FlhF flagellar biosy 98.0 5.2E-05 1.1E-09 69.0 10.1 87 121-227 192-281 (282)
500 KOG0059 Lipid exporter ABCA1 a 98.0 4E-05 8.7E-10 80.3 10.6 146 111-277 580-762 (885)
No 1
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=100.00 E-value=4e-59 Score=427.92 Aligned_cols=326 Identities=53% Similarity=0.854 Sum_probs=301.4
Q ss_pred hhhhhhcCCCccchhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHH
Q 019381 16 EELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQL 95 (342)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (342)
.+.++..+.+.+++.|++.||+|..+++|+++||.|+++++..++.+|++++|+|+.++.++++.+++..+.++.++.++
T Consensus 19 ~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~~~~~~~ta~~~ 98 (344)
T PLN03187 19 EEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLLNQGFITGSDA 98 (344)
T ss_pred hhhhhhhhcccCHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 34444445578899999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HhhhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHH
Q 019381 96 HAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLL 175 (342)
Q Consensus 96 ~~~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~ 175 (342)
++.+....+++||++.||.+|+|||+.|.+++|+|+||||||+||++++.++++|...||.+++|+|||+|.+|++.|+.
T Consensus 99 ~~~~~~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~ 178 (344)
T PLN03187 99 LLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV 178 (344)
T ss_pred HhhhccCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH
Confidence 88777788899999999999999999999999999999999999999999999988888778899999999999999999
Q ss_pred HHHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHH
Q 019381 176 QIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSL 255 (342)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~L 255 (342)
+++++++++++++++|+.+.+..+.+++...+..+...+...++++|||||++++++.++.++++..+|++.+.+++..|
T Consensus 179 ~ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L 258 (344)
T PLN03187 179 PIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRL 258 (344)
T ss_pred HHHHHcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888777777889999999999999998887777888998999999999
Q ss_pred HHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecC
Q 019381 256 QKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQ 335 (342)
Q Consensus 256 k~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~ 335 (342)
+++|+++|++||++||++..+++...| +++..|+||..|+|.+++|++|++.++..|.++|.|||+.|.+.+.|.|+++
T Consensus 259 ~~lA~~~~vavvvTNqv~~~~~~~~~~-~~~~~pagG~~~~h~~~~Rl~l~k~~~~~R~~~v~ksp~lp~~~~~f~It~~ 337 (344)
T PLN03187 259 TKIAEEFNVAVYMTNQVIADPGGGMFI-SDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKVFDAPNLPEAEAEFQITSG 337 (344)
T ss_pred HHHHHHcCCEEEEEecEEEcCCccccc-CCCCCCCCchhhheeeeEEEEEEcCCCCeEEEEEEECCCCCCceEEEEEeCC
Confidence 999999999999999999877654334 6778999999999999999999998888999999999999999999999999
Q ss_pred CCCCCCC
Q 019381 336 GVADVKD 342 (342)
Q Consensus 336 Gi~~~~~ 342 (342)
||.+++|
T Consensus 338 GI~d~~~ 344 (344)
T PLN03187 338 GIMDAKD 344 (344)
T ss_pred CccCCCC
Confidence 9999887
No 2
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=100.00 E-value=1.1e-57 Score=416.06 Aligned_cols=313 Identities=56% Similarity=0.887 Sum_probs=291.6
Q ss_pred chhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHHHhhhcccccccc
Q 019381 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITS 107 (342)
Q Consensus 28 ~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t 107 (342)
++.|++.||++.++++|+++||.|+.+++..++.+|++++|+|+.++.++++.+++....++.++.++++.+.....++|
T Consensus 1 ~~~~~~~g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~~~~~~~~isT 80 (313)
T TIGR02238 1 IDKLQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEISQKRKKVLKITT 80 (313)
T ss_pred CchhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccHHHHHHhhccCceeCC
Confidence 46789999999999999999999999999999999999999999999999999999988889999999988778889999
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhh
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGAD 187 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~ 187 (342)
|++.||.+|+||+++|.+++|+|+||+|||+||++++.+++.+...|+.+++|+|||+|.+|++.|+.+++++++.++++
T Consensus 81 G~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~ 160 (313)
T TIGR02238 81 GSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDA 160 (313)
T ss_pred CCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999999887777788899999999999999999999999999999
Q ss_pred hhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEE
Q 019381 188 VLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 267 (342)
Q Consensus 188 ~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi 267 (342)
+++++.+.+..+.+++.+.+..+...+...++++|||||++++++.++.++++..+|++.+.+++..|+.+|++++++||
T Consensus 161 ~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavv 240 (313)
T TIGR02238 161 VLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVF 240 (313)
T ss_pred hcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEE
Confidence 99999999999999999888888777777889999999999999988877777888988899999999999999999999
Q ss_pred EEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCCCCCC
Q 019381 268 ITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVADV 340 (342)
Q Consensus 268 ~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~Gi~~~ 340 (342)
++||++...+....|.+++.+|+||..|+|.+++||+|+|.++..|.++|.|+|+.|.+.+.|.|+++||.++
T Consensus 241 itNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~R~~~~~~sp~~p~~~~~f~i~~~Gi~~~ 313 (313)
T TIGR02238 241 VTNQVQADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMPEAEASFQITEGGIADA 313 (313)
T ss_pred EECceEecCCcccccCCCCccCcchhhhhhheeEEEEEEecCCCeEEEEEeeCCCCCCeEEEEEEeCCcccCC
Confidence 9999999766533554667899999999999999999999888899999999999999999999999999874
No 3
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=100.00 E-value=2.5e-57 Score=416.75 Aligned_cols=341 Identities=86% Similarity=1.260 Sum_probs=305.7
Q ss_pred ccccchhhHHHHhhhhhhhhcCCCccchhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHH
Q 019381 2 EQQRNQKTVQQQQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAA 81 (342)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 81 (342)
+|.-.|..-++-+....++..+.+..++.|+..||++..+.+|+++||.|+++++..++.+|++++++++.++.+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i~~is~~~~~~~~~~~ 81 (342)
T PLN03186 2 AQAVAAAAAQAMQEEEEEEAAHGPFPIEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAA 81 (342)
T ss_pred cchHHHHHHhhccchhhcccccCCccHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHH
Confidence 33333333334444555666677788999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCcHHHHHhhhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceE
Q 019381 82 SKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAM 161 (342)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl 161 (342)
.+....++.++.++++.+....+++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++++...|+.+++|+
T Consensus 82 ~~~~~~~~~ta~~~~~~~~~~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vl 161 (342)
T PLN03186 82 SKLVPLGFTTASQLHAQRQEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAM 161 (342)
T ss_pred HHhcccccchHHHHhhcccCcceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEE
Confidence 99888899999999887777889999999999999999999999999999999999999999999988877777778999
Q ss_pred EEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcch
Q 019381 162 YIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGEL 241 (342)
Q Consensus 162 ~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~ 241 (342)
|||+|++|++.|+.+++++++.+++.+++++.+.+..+.+++..++..+...+...++++|||||++++++.++.++++.
T Consensus 162 yIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l 241 (342)
T PLN03186 162 YIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGEL 241 (342)
T ss_pred EEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccH
Confidence 99999999999999999999999999999999999999999888888777777778899999999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCC
Q 019381 242 SARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSP 321 (342)
Q Consensus 242 ~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r 321 (342)
.+|++.+.++++.|+.+|+++|++||++||+...+++...|.+...+|+||..|+|.+++||+|++.++..|.++|.|||
T Consensus 242 ~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~~~~R~~~v~ksp 321 (342)
T PLN03186 242 SARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGRGENRICKVISSP 321 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecCCCeEEEEEEECC
Confidence 88888899999999999999999999999998877764355444459999999999999999999988899999999999
Q ss_pred CCCCeeEEEEEecCCCCCCCC
Q 019381 322 CLAEAEARFQISAQGVADVKD 342 (342)
Q Consensus 322 ~~~~~~~~f~I~~~Gi~~~~~ 342 (342)
+.|.+++.|.|+++||.+++|
T Consensus 322 ~~p~~e~~F~I~~~Gi~~~~~ 342 (342)
T PLN03186 322 CLPEAEARFSISSEGVTDVKD 342 (342)
T ss_pred CCCCeEEEEEEECCceecCCC
Confidence 999999999999999999886
No 4
>PTZ00035 Rad51 protein; Provisional
Probab=100.00 E-value=5.7e-57 Score=415.88 Aligned_cols=327 Identities=68% Similarity=1.065 Sum_probs=301.4
Q ss_pred hhhhhhcCCCccchhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHH
Q 019381 16 EELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQL 95 (342)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (342)
+..|.....+.+++.|+++||++..+++|+++||.|+.+++..++.+|++++|+++.++++++..+++....++.++.++
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis~~~~~~i~~~~~~~~~~~~~ta~~~ 90 (337)
T PTZ00035 11 EEEEEEAEGFQEIEKLQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGFISATEY 90 (337)
T ss_pred cchhhcccCCccHHHHhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHHhcccCCCCHHHH
Confidence 33445555667899999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HhhhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHH
Q 019381 96 HAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLL 175 (342)
Q Consensus 96 ~~~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~ 175 (342)
++.+....+++||++.||.+|+|||++|++++|+|+||||||+||++++..+++|...|+.+++|+|||+|..|++.|+.
T Consensus 91 ~~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~ 170 (337)
T PTZ00035 91 LEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV 170 (337)
T ss_pred HHhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH
Confidence 98887888999999999999999999999999999999999999999999888887778788899999999999999999
Q ss_pred HHHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHH
Q 019381 176 QIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSL 255 (342)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~L 255 (342)
+++++++.+++.+++|+.+.+.++.+++.+.+..+...+...++++|||||++++++.++.++++..+|++.+.+++..|
T Consensus 171 ~ia~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L 250 (337)
T PTZ00035 171 QIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRAL 250 (337)
T ss_pred HHHHHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888877777777889999999999999988877777888888899999999
Q ss_pred HHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecC
Q 019381 256 QKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQ 335 (342)
Q Consensus 256 k~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~ 335 (342)
+++|+++|++||++||++..+++...|.+++..|+||..|.|.+++|++|++.++..|.++|.|+|+.|.+.+.|.|+++
T Consensus 251 ~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~R~~~i~ksp~~p~~~~~f~It~~ 330 (337)
T PTZ00035 251 QKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDSPNLPESEAVFAISEG 330 (337)
T ss_pred HHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhheeEEEEEEecCCCeeEEEEEECCCCCCeeEEEEEeCC
Confidence 99999999999999999998765445657788999999999999999999998889999999999999999999999999
Q ss_pred CCCCCCC
Q 019381 336 GVADVKD 342 (342)
Q Consensus 336 Gi~~~~~ 342 (342)
||.+++|
T Consensus 331 Gi~~~~~ 337 (337)
T PTZ00035 331 GIIDAKD 337 (337)
T ss_pred ccccCCC
Confidence 9999886
No 5
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=100.00 E-value=2.8e-54 Score=395.03 Aligned_cols=315 Identities=75% Similarity=1.176 Sum_probs=289.2
Q ss_pred chhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHHHhhhcccccccc
Q 019381 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITS 107 (342)
Q Consensus 28 ~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t 107 (342)
++.|+..||++..+.+|+++||.|+.|++..++.+|+++++++..++.++...+.+.....+.++.++++.+.....++|
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~L~~i~~ls~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~~~~~~t 80 (316)
T TIGR02239 1 IEKLEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRQEVIQLTT 80 (316)
T ss_pred CchhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhcccccccHHHHHhcccccceeCC
Confidence 45788999999999999999999999999999999999999999999999999998888889999998887777889999
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhh
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGAD 187 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~ 187 (342)
|++.||.+|+||+++|++++|+|+||+|||+||++++.+++.++..|+.+++|+|||+|..|++.|+.+++++++.++++
T Consensus 81 g~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~ 160 (316)
T TIGR02239 81 GSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPED 160 (316)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999888887777777899999999999999999999999999999
Q ss_pred hhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEE
Q 019381 188 VLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 267 (342)
Q Consensus 188 ~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi 267 (342)
+++++.+.+..+.+++...+..+...+...++++|||||++++++.++.++++...|+..+.+++..|+.+|++++++||
T Consensus 161 ~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv 240 (316)
T TIGR02239 161 VLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVV 240 (316)
T ss_pred hhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 99999999999998888888887777767789999999999999888776666777888889999999999999999999
Q ss_pred EEeccccccCCC-cccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCCCCCCCC
Q 019381 268 ITNQVVAQVDGS-AIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVADVKD 342 (342)
Q Consensus 268 ~~~h~~~~~~~~-~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~Gi~~~~~ 342 (342)
+|||++..+++. ..|.+++..|+||..|+|.+++|++|++.++..|.+++.|||+.|.+++.|.|+++||.++++
T Consensus 241 ~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~~~~R~~~v~ksp~~p~~~~~f~i~~~Gi~~~~~ 316 (316)
T TIGR02239 241 ITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAMFAIYEDGIGDPKE 316 (316)
T ss_pred EECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecCCCeEEEEEEECCCCCCeEEEEEEeCCceecCCC
Confidence 999999877653 235567889999999999999999999988889999999999999999999999999999875
No 6
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.8e-55 Score=372.79 Aligned_cols=315 Identities=50% Similarity=0.807 Sum_probs=302.5
Q ss_pred chhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHHHhhhcccccccc
Q 019381 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITS 107 (342)
Q Consensus 28 ~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t 107 (342)
++.|+-+|+....+.+|+..|+.++.-+..+..+.|..+.++++..+.++.+++.+..+.++.+|.++++.+.....|+|
T Consensus 20 i~~l~~~gi~~td~~kLk~~gi~tikgv~ist~r~l~~lkgise~kv~klkeaa~k~~~~~f~tA~e~le~r~~v~~ItT 99 (335)
T KOG1434|consen 20 IEELQVHGINVTDIEKLKSKGICTIKGVLISTRRALCKLKGISEVKVDKLKEAANKSISHGFCTALELLEQRKTVGSITT 99 (335)
T ss_pred HHHHHhcccchhhHHhhccCCeeeEeeeeehhHHHHHHHhhHHHHhhhhHHHhhCCccCcCcchHHHHHhhhhccceeec
Confidence 77899999998899999999999999999999999999999999999999998888889999999999998888999999
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhh
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGAD 187 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~ 187 (342)
|+..||.+|||||+.-++++|+|.+|+|||+++.+++..+++|...||.+++++|||||++|.++|++.++++++.+++.
T Consensus 100 gs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IAe~~~~d~d~ 179 (335)
T KOG1434|consen 100 GSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIAERFKVDPDF 179 (335)
T ss_pred chHHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceeEeecCCHHHHHHHHHHHHHHhHhc-CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEE
Q 019381 188 VLENVAYARAYNTDHQSRLLLEAASMMVET-RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAV 266 (342)
Q Consensus 188 ~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~v 266 (342)
.++|+.|++.++.+++++++..+...+.++ ..+|||+|++..+|+.+++++|++++|++.+..++..|.++|++++++|
T Consensus 180 ~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~laeefnvAV 259 (335)
T KOG1434|consen 180 TLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNKLAEEFNVAV 259 (335)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehheeecccccccHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 999999999999999999999999988886 6899999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCCCCCCCC
Q 019381 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVADVKD 342 (342)
Q Consensus 267 i~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~Gi~~~~~ 342 (342)
+++||++..++.+..|.....+|+||..|+|.+.+|+.|+|++|+.|++++.|||..|..++.|.|++.||.|.++
T Consensus 260 fltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkgrg~eR~Akl~dSP~mpe~e~~y~It~~Gi~dss~ 335 (335)
T KOG1434|consen 260 FLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKGRGDERVAKLYDSPSMPEAEASYVITPGGIRDSSV 335 (335)
T ss_pred EEecceecCCcccccccccccCccccchhhhhhheeEEEEcCCcceeeeecccCCCCCcceEEEEEcCCccccCCC
Confidence 9999999988877678777899999999999999999999999999999999999999999999999999999875
No 7
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=100.00 E-value=1.9e-51 Score=366.50 Aligned_cols=255 Identities=46% Similarity=0.801 Sum_probs=229.2
Q ss_pred CCCCcHHHHHhhhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 87 LGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.+|.+|.++++.+.....++||++.||.+|+||++.|.+++|+|+||||||+||+++|++++++...||.+++|+|||||
T Consensus 2 ~~f~ta~~~~~~~~~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe 81 (256)
T PF08423_consen 2 MGFQTAAELLEQRKRWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTE 81 (256)
T ss_dssp TSSEEHHHHHHHHHTS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESS
T ss_pred CCcccHHHHHHHhhcCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCC
Confidence 46889999998878888999999999999999999999999999999999999999999999998888889999999999
Q ss_pred CCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHH
Q 019381 167 GTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQM 246 (342)
Q Consensus 167 ~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~ 246 (342)
..|+..|+.+++++++.+++++++|+.+.+..+..++..++..+...+...+++||||||++++++.++.++++..+|.+
T Consensus 82 ~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~ 161 (256)
T PF08423_consen 82 GTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQR 161 (256)
T ss_dssp SSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHH
T ss_pred CCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHH
Confidence 99999999999999999999999999999999999999999988888888899999999999999998877777889999
Q ss_pred HHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCe
Q 019381 247 HLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA 326 (342)
Q Consensus 247 ~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~ 326 (342)
.+.++++.|+.+|++++++||++||++..+++...|.++..+|++|..|+|.+++||+|+|.++..|.++|.|+|+.|..
T Consensus 162 ~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~~~~R~~~i~ksp~~p~~ 241 (256)
T PF08423_consen 162 MLARLARILKRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGRGSERVATIVKSPSLPEG 241 (256)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECSTTEEEEEEEECSSSSSE
T ss_pred HHHHHHHHHHHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCCCCeEEEEEeECCCCCCc
Confidence 99999999999999999999999999998877545656788999999999999999999998889999999999999999
Q ss_pred eEEEEEecCCCCCCC
Q 019381 327 EARFQISAQGVADVK 341 (342)
Q Consensus 327 ~~~f~I~~~Gi~~~~ 341 (342)
.+.|.|+++||+|+|
T Consensus 242 ~~~f~It~~Gi~d~~ 256 (256)
T PF08423_consen 242 SASFQITEDGIRDVK 256 (256)
T ss_dssp EEEEEEETTEEEE--
T ss_pred eEEEEEeCCCccCCC
Confidence 999999999999976
No 8
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=100.00 E-value=1.3e-47 Score=353.77 Aligned_cols=303 Identities=49% Similarity=0.797 Sum_probs=272.0
Q ss_pred CCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccC-CCCcHHHHHhhhccccccccCChhh
Q 019381 34 SGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL-GFTSATQLHAQRLEIIQITSGSREL 112 (342)
Q Consensus 34 ~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~tg~~~L 112 (342)
+|+.+...++|.++||.|++++...++.+|.+++|++...+..+++.+...... ++.++.++.+.+.....++||++.|
T Consensus 12 ~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~ks~~~~~Tg~~~l 91 (317)
T PRK04301 12 PGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERRKNVGKITTGSKEL 91 (317)
T ss_pred CCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHHhhccccCccHHHHHHhhccCCccCCCCHHH
Confidence 578899999999999999999999999999999999998888898888766554 5778877776666677899999999
Q ss_pred HhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcce
Q 019381 113 DKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENV 192 (342)
Q Consensus 113 D~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i 192 (342)
|.+|+||+++|.+++|+|+||||||+||++++.+++.+...|+.+++|+||++|++|++.|+.+++++++.+++++++++
T Consensus 92 D~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i 171 (317)
T PRK04301 92 DELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNI 171 (317)
T ss_pred HHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccE
Confidence 99999999999999999999999999999999999988777778889999999999999999999999999999899999
Q ss_pred eEeecCCHHHHHHHHHHHHHHhHh-cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Q 019381 193 AYARAYNTDHQSRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQ 271 (342)
Q Consensus 193 ~~~~~~~~~~~~~~l~~l~~~~~~-~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h 271 (342)
.+++..+...+..++..+...+.. .++++|||||++++++.++.++++..+|++.+.+++..|+.+|++++++||++||
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 172 HVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 999988888777777777777766 6899999999999998877666666778877889999999999999999999999
Q ss_pred cccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCCCCC
Q 019381 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVAD 339 (342)
Q Consensus 272 ~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~Gi~~ 339 (342)
+....+. .| ++...|++|..|.|.+++||.|++.++..|.++|.|+|+.|.+.+.|.|+++||.+
T Consensus 252 v~~~~~~--~~-~~~~~~~~G~~~~~~~~~rl~l~k~~~~~R~~~v~k~~~~~~~~~~f~I~~~Gi~~ 316 (317)
T PRK04301 252 VMARPDA--FF-GDPTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPHLPEGEAVFRITEEGIRD 316 (317)
T ss_pred EEecccc--cc-CccccCCcchHhHhheeEEEEEEecCCCceEEEEEeCCCCCCceEEEEEeCCcccC
Confidence 9886543 34 67789999999999999999999988889999999999999999999999999986
No 9
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=100.00 E-value=2.7e-47 Score=351.22 Aligned_cols=303 Identities=48% Similarity=0.797 Sum_probs=269.2
Q ss_pred CCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccC-CCCcHHHHHhhhccccccccCChhh
Q 019381 34 SGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL-GFTSATQLHAQRLEIIQITSGSREL 112 (342)
Q Consensus 34 ~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~tg~~~L 112 (342)
+|+.+...++|.++||.|++++...++++|.+++|++...+..+...+.+.... .+.++.++++.+.....++||++.+
T Consensus 5 ~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~Tg~~~l 84 (310)
T TIGR02236 5 PGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERRKTIGKITTGSKEL 84 (310)
T ss_pred CCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHHHHhhccCCCCHHHHHHhhccCCeecCCCHHH
Confidence 688999999999999999999999999999999999988888888877654433 3567777776666677899999999
Q ss_pred HhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcce
Q 019381 113 DKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENV 192 (342)
Q Consensus 113 D~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i 192 (342)
|.+|+||++.|.+++|+|+||+|||+||++++.+++.+...|+.+++|+|||+|++|++.|+.++++.++++.+.+++++
T Consensus 85 D~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i 164 (310)
T TIGR02236 85 DELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNI 164 (310)
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhce
Confidence 99999999999999999999999999999999999988777777779999999999999999999999999988888899
Q ss_pred eEeecCCHHHHHHHHHHHHHHhHhc--CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Q 019381 193 AYARAYNTDHQSRLLLEAASMMVET--RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITN 270 (342)
Q Consensus 193 ~~~~~~~~~~~~~~l~~l~~~~~~~--~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~ 270 (342)
.+.+..+......+++.+...+... ++++|||||++++++.++.++++..+|++.+.+++..|+.+|++++++||++|
T Consensus 165 ~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 165 YVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 9999888877777777777777665 48999999999999887776666788888899999999999999999999999
Q ss_pred ccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCCCCC
Q 019381 271 QVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVAD 339 (342)
Q Consensus 271 h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~Gi~~ 339 (342)
|++..++. .| +++..|+||..|+|++++||.|++..+..|.++|.|||+.|.+.+.|.|+++||.+
T Consensus 245 qv~~~~~~--~~-~~~~~~~~G~~~~h~~~~rl~l~~~~~~~R~~~~~k~~~~~~~~~~f~i~~~Gi~~ 310 (310)
T TIGR02236 245 QVMARPDA--FF-GDPTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHLPEGEAVFRITEKGIED 310 (310)
T ss_pred eeeecCcc--cc-CccccCCcchhhhhheeEEEEEEecCCCeEEEEEEECCCCCCeeEEEEEeCCCccC
Confidence 99986653 23 66789999999999999999999977788999999999999999999999999975
No 10
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=100.00 E-value=3.9e-40 Score=292.25 Aligned_cols=234 Identities=64% Similarity=1.028 Sum_probs=206.4
Q ss_pred cccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCC
Q 019381 105 ITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLN 184 (342)
Q Consensus 105 i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 184 (342)
++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+..++|.+.+|+||++|..++..|+.++++.++.+
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence 58999999999999999999999999999999999999998888776666677899999999999999999999999999
Q ss_pred hhhhhcceeEeecCCHHHHHHHHHHHHHHhHhc-CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhC
Q 019381 185 GADVLENVAYARAYNTDHQSRLLLEAASMMVET-RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 263 (342)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~ 263 (342)
++.+++++.+.+..+..++...+..+...+... ++++|||||++.+++.++.+.++..+|.+.+.+++..|+.+|++++
T Consensus 81 ~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~ 160 (235)
T cd01123 81 PEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFN 160 (235)
T ss_pred hHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 889999999999999888888888888888777 8999999999999876554443356777889999999999999999
Q ss_pred CEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCCCC
Q 019381 264 VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVA 338 (342)
Q Consensus 264 ~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~Gi~ 338 (342)
++||++||++...+....+.+....|++|..|.|.+++|+++++.++..|.++|.|+++.|...++|+|+++||+
T Consensus 161 ~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~~~r~~~i~k~~~~~~~~~~f~It~~Gi~ 235 (235)
T cd01123 161 VAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGRGEERIAKIVDSPHLPEGEAVFAITEEGIR 235 (235)
T ss_pred CEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECCCCceEEEEeeCCCCCCceEEEEEeCCccC
Confidence 999999999986654211124556899999999999999999998878899999999999977799999999985
No 11
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-36 Score=268.29 Aligned_cols=228 Identities=36% Similarity=0.517 Sum_probs=205.8
Q ss_pred hhhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHH
Q 019381 97 AQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQ 176 (342)
Q Consensus 97 ~~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~ 176 (342)
........++||...||.+|+||+++|.+++|+||+||||||+|++++++++.+ ++.++|||+|+.|++.|+++
T Consensus 34 ~~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~------g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 34 ERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP------GGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred HHhhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcC------CCeEEEEeCCCCCCHHHHHH
Confidence 344457789999999999999999999999999999999999999999999984 66899999999999999999
Q ss_pred HHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHH
Q 019381 177 IADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQ 256 (342)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk 256 (342)
++... .+++.+.++.+.++..++++.+...... +++||||||++++++.++.+++....+.+.+.+.++.|.
T Consensus 108 l~~~~-------~d~l~v~~~~~~e~q~~i~~~~~~~~~~-~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~ 179 (279)
T COG0468 108 LGVDL-------LDNLLVSQPDTGEQQLEIAEKLARSGAE-KIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLT 179 (279)
T ss_pred HHHhh-------hcceeEecCCCHHHHHHHHHHHHHhccC-CCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHH
Confidence 88765 5689999999999999988877766554 799999999999999988777778889999999999999
Q ss_pred HHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEee------cCCeEEEEEEeCCCCCCe-eEE
Q 019381 257 KLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKG------RGEERICKVISSPCLAEA-EAR 329 (342)
Q Consensus 257 ~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~------~~~~r~~~v~K~r~~~~~-~~~ 329 (342)
.++++++++||++||+...++. +| +++..|.||..+.|.+..++.+++. .+..|.++++|++..|.. ++.
T Consensus 180 ~~a~~~~~~vi~~NQv~~k~~~--~f-~~~~~~~GG~~L~~~as~rl~l~k~~~~~~~~g~~r~~~vvk~~~~p~~~~a~ 256 (279)
T COG0468 180 RLANKYNTAVIFTNQVRAKIGV--MF-GDPETTTGGNALKFYASVRLDLRRIESLKEDVGNKRRVKVVKNKVAPPFKEAE 256 (279)
T ss_pred HHHHHcCcEEEEECceeeecCc--cc-CCcccCCCchHHHhhhheEEEEeeccccccccCCeEEEEEEeCCCCCCCceeE
Confidence 9999999999999999998775 45 5788999999999999999999998 789999999999998876 799
Q ss_pred EEEecCCCCCCC
Q 019381 330 FQISAQGVADVK 341 (342)
Q Consensus 330 f~I~~~Gi~~~~ 341 (342)
|+|++.|+.+.+
T Consensus 257 f~I~~~~~~~~~ 268 (279)
T COG0468 257 FDITYGGGIDRE 268 (279)
T ss_pred EEeecCcccccc
Confidence 999999888753
No 12
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=100.00 E-value=1.2e-36 Score=268.30 Aligned_cols=223 Identities=56% Similarity=0.882 Sum_probs=193.6
Q ss_pred cccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCC
Q 019381 105 ITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLN 184 (342)
Q Consensus 105 i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 184 (342)
++||++.||.+++||+++|++++|+|+||+|||+||++++.+++.+.+.||.+.+|+||++|..+++.++.++++.++.+
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~ 80 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD 80 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999999999999999999999999888766666667899999999999999999999998888
Q ss_pred hhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCC
Q 019381 185 GADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGV 264 (342)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~ 264 (342)
.+.+++++.+.+..+.+++...+..+.......++++||||+++.+++.+..+++...+|.+.+.++++.|+.+|+++++
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~ 160 (226)
T cd01393 81 PEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNV 160 (226)
T ss_pred hhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88888999999999888888888777665556789999999999998865543333567777889999999999999999
Q ss_pred EEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecC---CeEEEEEEeCCCCCCeeEEE
Q 019381 265 AVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRG---EERICKVISSPCLAEAEARF 330 (342)
Q Consensus 265 ~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~---~~r~~~v~K~r~~~~~~~~f 330 (342)
+||++||+++..++. + +....|++|..|+|.+++|+.|++..+ ..|.+.++|+++.|.+++.|
T Consensus 161 ~vi~tnq~~~~~~~~--~-~~~~~p~~G~~~~~~~~~ri~l~~~~~~~~~~r~~~~~k~~~~~~~~~~~ 226 (226)
T cd01393 161 AVVFTNQVRAKVDVM--F-GDPETPAGGNALAHASTTRLDLRKGRGIIGERRIAKVVKSPALPEAEAEF 226 (226)
T ss_pred EEEEEEEEeeecccc--c-CCCccccCchhhhCcccEEEEEEecCCccCcEEEEEEEeCCCCCCccccC
Confidence 999999999866531 1 345689999999999999999999875 68999999999999887654
No 13
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=100.00 E-value=8.2e-37 Score=262.87 Aligned_cols=285 Identities=31% Similarity=0.453 Sum_probs=220.1
Q ss_pred chHHhhcCChHHHHHHhCCCHHHHHHHHHH----HhhhccCCCCcHHHHHhhhccccccccCChhhHhhhcCCCCCCcEE
Q 019381 51 TVESVAYSPRKELLQIKGISEAKVDKIIEA----ASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSIT 126 (342)
Q Consensus 51 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~tg~~~LD~~l~GGi~~G~l~ 126 (342)
...|++..+..++.++...+..+.-.+... +.+..+..... ........++||+..||+.++|||+.+.++
T Consensus 31 s~vdfltlt~~sl~r~~h~s~~e~lr~~~~li~q~~~~~~e~~~~-----~s~~~~~~lttgc~~LD~~L~GGi~~~giT 105 (351)
T KOG1564|consen 31 SKVDFLTLTQQSLHRIVHKSTPEDLRVLKDLIMQNLKLKPENLCS-----RSKTNRSKLTTGCVALDECLRGGIPTDGIT 105 (351)
T ss_pred CcccceecChhHHHHHHHhccHHHHHHHHHHHHHHHHhcchhhhc-----cccCCchhcccccHHHHHHhcCCcccccHH
Confidence 444566666777777776665444443222 22222111000 111223469999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC--Chh---hhhcc----eeEeec
Q 019381 127 EIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL--NGA---DVLEN----VAYARA 197 (342)
Q Consensus 127 ~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~--~~~---~~~~~----i~~~~~ 197 (342)
+|+|++|+|||+||+|+++.+++|...||.+++++||.+|.+|+..|+.++...+.- +++ ....| +++...
T Consensus 106 Ei~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~~~rp~~~~~~~~~~Npgd~IFv~~~ 185 (351)
T KOG1564|consen 106 EICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTLPQRPNPEKELNYNDNPGDHIFVENV 185 (351)
T ss_pred HHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhcccCCCcchhhhhccCCCceEEEEec
Confidence 999999999999999999999999999999999999999999999998888765532 222 12234 778888
Q ss_pred CCHHHHHHHHHH-HHHHhHhcCceEEEEeccccccccccC-CCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 198 YNTDHQSRLLLE-AASMMVETRFALMIVDSATALYRTDFS-GRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 198 ~~~~~~~~~l~~-l~~~~~~~~~~lvviD~l~~l~~~~~~-~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
.+.+.+.+++.. +..++...+++||||||++++|+.+++ .+.+...|.+.+.++...|+.+|.+++++|+++||+++.
T Consensus 186 ~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l~rla~~Lr~LA~~~~~aVV~~NQVtd~ 265 (351)
T KOG1564|consen 186 HDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHLFRLAGKLRQLASKFDLAVVCANQVTDR 265 (351)
T ss_pred cchhhHHHHHhhhccceeccCcceEEEEehhhHHHHHHhccChhhhhhHHHHHHHHHHHHHHHHHhcCccEEEeeccccc
Confidence 888888887764 444555577999999999999998876 334566788899999999999999999999999999987
Q ss_pred cCCCc----ccCC--------CCccccCccccccccceEEEEEee--c-------CCeEEEEEEeCCCCCCeeEEEEEec
Q 019381 276 VDGSA----IFAG--------PQIKPIGGNIMAHASTTRLALRKG--R-------GEERICKVISSPCLAEAEARFQISA 334 (342)
Q Consensus 276 ~~~~~----~~~~--------~~~~p~~g~~~~~~~d~~l~l~~~--~-------~~~r~~~v~K~r~~~~~~~~f~I~~ 334 (342)
.+.+. .+.. .-..|++|-.|++...+|+.+.|. + ...|.++|+-+++.|...+.|.|+.
T Consensus 266 ~~~~~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~~k~~~sa~~~~~~R~l~VvySp~~p~~~~~~~It~ 345 (351)
T KOG1564|consen 266 VETSDDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRSTKNCDSAVSRSAKRTLRVVYSPYLPPSSCEFMITA 345 (351)
T ss_pred cccccccCCccccchhhccccccccccccceeccccceeeeeeeccccccchhhcccceEEEEEecCCCCCcceEEEEec
Confidence 54321 1101 116899999999999999999982 1 2469999999999999999999999
Q ss_pred CCCCCC
Q 019381 335 QGVADV 340 (342)
Q Consensus 335 ~Gi~~~ 340 (342)
+||..+
T Consensus 346 eGI~~~ 351 (351)
T KOG1564|consen 346 EGICAV 351 (351)
T ss_pred ceEecC
Confidence 999763
No 14
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=100.00 E-value=6.4e-35 Score=257.08 Aligned_cols=221 Identities=34% Similarity=0.532 Sum_probs=184.7
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcC
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYG 182 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~ 182 (342)
+.++||++.||++|+||+++|++++|+|+||+|||+||++++.+++. .+.+|+||++| .+++.++.+++..
T Consensus 3 ~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~------~~~~v~yi~~e-~~~~~r~~~~~~~-- 73 (225)
T PRK09361 3 ERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK------NGKKVIYIDTE-GLSPERFKQIAGE-- 73 (225)
T ss_pred ccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEECC-CCCHHHHHHHHhh--
Confidence 36899999999999999999999999999999999999999998876 46789999999 7888888877665
Q ss_pred CChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 019381 183 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF 262 (342)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~ 262 (342)
+++.+++++.+.++.+..+....++.+...+. .++++||||+++++++.++.+.++...+.+.+.+++..|+++|+++
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~ 151 (225)
T PRK09361 74 -DFEELLSNIIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKH 151 (225)
T ss_pred -ChHhHhhCeEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667788888888888777777776666554 7899999999999987643322334555667888888999999999
Q ss_pred CCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCe-eEEEEEecCCCCCC
Q 019381 263 GVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA-EARFQISAQGVADV 340 (342)
Q Consensus 263 ~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~-~~~f~I~~~Gi~~~ 340 (342)
+++||++||+....+. ....|++|..|+|++|.++.|++.++..|.+.+.|+|..+.+ .++|+|+++||...
T Consensus 152 ~v~vi~tnq~~~~~~~------~~~~~~gg~~~~~~~d~ii~l~~~~~~~r~~~i~k~~~~~~~~~~~f~It~~Gi~~~ 224 (225)
T PRK09361 152 DLAVVITNQVYSDIDS------DGLRPLGGHTLEHWSKTILRLEKFRNGKRRATLEKHRSRPEGESAEFRITDRGIEII 224 (225)
T ss_pred CCEEEEEccceecCCC------CcccCCCcchhhhhccEEEEEEEccCCeEEEEEEECCCCCCCCeEEEEEeCCcEecC
Confidence 9999999999875542 235678899999999999999997778899999999988764 48999999999753
No 15
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=100.00 E-value=8.7e-34 Score=248.69 Aligned_cols=217 Identities=33% Similarity=0.458 Sum_probs=173.0
Q ss_pred cccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCC
Q 019381 105 ITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLN 184 (342)
Q Consensus 105 i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 184 (342)
++||++.||.+|+||+++|++++|+|+||||||+||+++|.+++. .+++|+||++|..+. .++++++...
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~------~g~~v~yi~~e~~~~-~~~~~~~~~~--- 70 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG------QGKKVAYIDTEGLSS-ERFRQIAGDR--- 70 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEECCCCCH-HHHHHHHhHC---
Confidence 589999999999999999999999999999999999999988765 467899999998765 6666665432
Q ss_pred hhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCC
Q 019381 185 GADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGV 264 (342)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~ 264 (342)
.+....++.+.++.+..++...+..+...+. .++++|||||++.+++.+.........+.+.+.+++..|+.+|+++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~ 149 (218)
T cd01394 71 PERAASSIIVFEPMDFNEQGRAIQETETFAD-EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDV 149 (218)
T ss_pred hHhhhcCEEEEeCCCHHHHHHHHHHHHHHHh-cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3345567878887776666666666555443 458999999999997654432222244555678888999999999999
Q ss_pred EEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCee-EEEEEecCCCC
Q 019381 265 AVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAE-ARFQISAQGVA 338 (342)
Q Consensus 265 ~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~-~~f~I~~~Gi~ 338 (342)
+||++||+++..++ ....|.+|..|+|++|.++.|++..+..|.+.+.|+|..+.+. ++|+|+++||+
T Consensus 150 ~vi~t~q~~~~~~~------~~~~p~~g~~~~~~~d~~i~l~~~~~~~r~~~~~~~~~~~~~~~~~f~It~~Gi~ 218 (218)
T cd01394 150 AVVITNQVYSDVGS------GSVRPLGGHTLEHWSKVILRLEKLRVGTRRAVLEKHRFRPEGSSVYFRITDKGIE 218 (218)
T ss_pred EEEEecCCEEcCCC------CcccccCCcchhcceeEEEEEEEcCCCeEEEEEeeCCCCCCCceEEEEEeCCccC
Confidence 99999999875442 3457889999999999999999987667777788888777654 79999999985
No 16
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=100.00 E-value=1.8e-32 Score=238.77 Aligned_cols=208 Identities=36% Similarity=0.548 Sum_probs=173.7
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcc
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLEN 191 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~ 191 (342)
||++|+||+++|++++|+|+||+|||+||++++.+.+. .+.+|+||++|. +++.++.++++.+ ++...++
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~------~g~~v~yi~~e~-~~~~rl~~~~~~~---~~~~~~~ 70 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAAR------QGKKVVYIDTEG-LSPERFKQIAEDR---PERALSN 70 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECCC-CCHHHHHHHHHhC---hHHHhcC
Confidence 79999999999999999999999999999999988765 467899999997 8899999888765 4556688
Q ss_pred eeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Q 019381 192 VAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQ 271 (342)
Q Consensus 192 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h 271 (342)
+.+.++.+..+....+..+...+...++++|||||++.+++.+..+. ...+.+.+.+++..|+++++++++++|++||
T Consensus 71 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~--~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 71 FIVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLELSDD--RISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCc--cHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 88888888888777777777777777899999999999987544322 1345556778888999999999999999999
Q ss_pred cccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCe-eEEEEEecCCCC
Q 019381 272 VVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEA-EARFQISAQGVA 338 (342)
Q Consensus 272 ~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~-~~~f~I~~~Gi~ 338 (342)
++...++ ....|++|..|+|++|.++.|++.+ ..|.+.+.|++..+.+ .+.|+|+++||+
T Consensus 149 ~~~~~~~------~~~~~~gg~~~~~~~d~vi~l~~~~-~~r~~~i~k~~~~~~~~~~~f~It~~Gi~ 209 (209)
T TIGR02237 149 VYTDVNN------GTLRPLGGHLLEHWSKVILRLEKFR-GRRLATLEKHRSRPEGESVYFRITDDGIE 209 (209)
T ss_pred cEEecCC------CCCcCCCcchhheeeeEEEEEEecC-CEEEEEEEECCCCCCCCeEEEEEeCCccC
Confidence 9875442 2357889999999999999999875 5788889999988764 489999999985
No 17
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=100.00 E-value=2.1e-34 Score=259.67 Aligned_cols=313 Identities=61% Similarity=0.908 Sum_probs=270.0
Q ss_pred hhhhhhhcCCCccchhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHH
Q 019381 15 QEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQ 94 (342)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (342)
|..+++.+-.|.++..+...++++..+..|+..++.++.++...+.+++..+.+++.....+....+....+.
T Consensus 11 ~~al~~~~~~~~~~~~~~~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~~~------- 83 (326)
T KOG1433|consen 11 QKALEEIGLSPAPVRFLLAGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLVPM------- 83 (326)
T ss_pred hHHHHhcccCccchhhhhcccccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhhHH-------
Confidence 3445666777778889999999999999999999999999999999999999999886665555544443221
Q ss_pred HHhhhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHH
Q 019381 95 LHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRL 174 (342)
Q Consensus 95 ~~~~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl 174 (342)
++.+.....++||..+||++|+||++.|++++|+||||||||+||+.++..+ |+..++++|||++..|...++
T Consensus 84 -~~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~------~gge~~~l~IDs~s~~~~~~~ 156 (326)
T KOG1433|consen 84 -LQLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTC------GGGEGKVLYIDTESTFRLERL 156 (326)
T ss_pred -HHhhccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhc------cCCcceEEEEecchhcccchh
Confidence 2455667789999999999999999999999999999999999998877655 446789999999998888898
Q ss_pred HHHHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHH
Q 019381 175 LQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRS 254 (342)
Q Consensus 175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~ 254 (342)
..++.+++.......+++.+.+..+..........+...+......++++|+.+..++.++.+.++..++.......++.
T Consensus 157 ~~ia~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g~~~~~a~~~~~~~~~~~ 236 (326)
T KOG1433|consen 157 TEIAGRSGLRGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKGRGELSARQMLLAKFLRS 236 (326)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEecccccccccccccccchHHHHHHHHHHHHH
Confidence 89999888877766777777777777766666666666666667899999999999999888877888899999999999
Q ss_pred HHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEec
Q 019381 255 LQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISA 334 (342)
Q Consensus 255 Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~ 334 (342)
|++++++++++||++||++...++..+|+.+...|.+|..|+|.+++++.+.+.++..|.+++.++|..|+.+..|.|.+
T Consensus 237 l~~la~~~g~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~~g~~~~~k~~~s~~l~e~~~~~~i~~ 316 (326)
T KOG1433|consen 237 LKKLADEFGVAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKGKGERRICKIADSPCLPEAEAVFAITE 316 (326)
T ss_pred HHHHHHhcCceEEEecccccccccccccCcccccccccchHHHHHHHHHHHHhccccchhhhhhcCCCCCcchhHHHHHh
Confidence 99999999999999999999999877887788999999999999999999999888899999999999999999999999
Q ss_pred CCCCCCC
Q 019381 335 QGVADVK 341 (342)
Q Consensus 335 ~Gi~~~~ 341 (342)
.||.+-.
T Consensus 317 ~g~~~~~ 323 (326)
T KOG1433|consen 317 DGISDQR 323 (326)
T ss_pred hhhhhhh
Confidence 9998754
No 18
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.98 E-value=5.2e-31 Score=239.57 Aligned_cols=221 Identities=27% Similarity=0.395 Sum_probs=178.4
Q ss_pred ccccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
.....++||++.||.+|+ ||+|+|.+++|+||||||||+||++++.+++. .++.++|||+|..+++ ..+
T Consensus 31 ~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~------~g~~~vyId~E~~~~~----~~a 100 (325)
T cd00983 31 QDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK------LGGTVAFIDAEHALDP----VYA 100 (325)
T ss_pred cCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCCEEEECccccHHH----HHH
Confidence 356789999999999999 99999999999999999999999999998876 5788999999998776 456
Q ss_pred HHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc-cccCCCc---chHHHHHHHHHHHHH
Q 019381 179 DRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR-TDFSGRG---ELSARQMHLAKFLRS 254 (342)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~~---~~~~r~~~l~~i~~~ 254 (342)
+.++++.+ ++.+.++.+.++....+. .++....+++|||||++++++ .+..+.. ....+.+.+.+.++.
T Consensus 101 ~~lGvd~~----~l~v~~p~~~eq~l~i~~---~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~ 173 (325)
T cd00983 101 KKLGVDLD----NLLISQPDTGEQALEIAD---SLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRK 173 (325)
T ss_pred HHcCCCHH----HheecCCCCHHHHHHHHH---HHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHH
Confidence 77888765 456777777666555444 455567899999999999985 4543321 112334457788999
Q ss_pred HHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---------CCeEEEEEEeCCCCCC
Q 019381 255 LQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE 325 (342)
Q Consensus 255 Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---------~~~r~~~v~K~r~~~~ 325 (342)
|..+++++++++|++||+...... +| +.+..|.||..|.|.+..++.+++.+ |..+.++|+||+..|+
T Consensus 174 L~~~~~k~~~~vI~tNQvr~~ig~--~~-g~~e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~G~~~~~~v~Knk~~~p 250 (325)
T cd00983 174 LTGSINKSNTTVIFINQLREKIGV--MF-GNPETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNRTKVKVVKNKVAPP 250 (325)
T ss_pred HHHHHHhCCCEEEEEEcccccccc--cc-CCCccCCCchHHhhhcceEEEEEeecccccCCcccccEEEEEEEecccCCC
Confidence 999999999999999999986653 45 57788999999999999999999864 3557899999998765
Q ss_pred -eeEEEEEec-CCCCCC
Q 019381 326 -AEARFQISA-QGVADV 340 (342)
Q Consensus 326 -~~~~f~I~~-~Gi~~~ 340 (342)
..++|+|.. +||...
T Consensus 251 ~~~~~~~i~~~~Gi~~~ 267 (325)
T cd00983 251 FKTAEFDILFGEGISRE 267 (325)
T ss_pred CCceEEEEEcCcccchh
Confidence 558999986 788753
No 19
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.8e-31 Score=237.82 Aligned_cols=208 Identities=26% Similarity=0.411 Sum_probs=177.6
Q ss_pred ccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~ 179 (342)
...++++||+.+||++||||+-+|++++|.|.||.|||||++|++...+. .++|+|+++|.+ ...++.+++
T Consensus 70 ~~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~-------~~~vLYVsGEES--~~QiklRA~ 140 (456)
T COG1066 70 EEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK-------RGKVLYVSGEES--LQQIKLRAD 140 (456)
T ss_pred eecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHh-------cCcEEEEeCCcC--HHHHHHHHH
Confidence 35678999999999999999999999999999999999999999988876 238999999987 666778899
Q ss_pred HcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCC-CcchHHHHHHHHHHHHHHHHH
Q 019381 180 RYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSG-RGELSARQMHLAKFLRSLQKL 258 (342)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~-~~~~~~r~~~l~~i~~~Lk~l 258 (342)
+++.+. +++++....+.+.+...+ ...+|+++||||++.++.++..+ .|..+| +++....|.++
T Consensus 141 RL~~~~----~~l~l~aEt~~e~I~~~l-------~~~~p~lvVIDSIQT~~s~~~~SapGsVsQ----VRe~t~~L~~~ 205 (456)
T COG1066 141 RLGLPT----NNLYLLAETNLEDIIAEL-------EQEKPDLVVIDSIQTLYSEEITSAPGSVSQ----VREVAAELMRL 205 (456)
T ss_pred HhCCCc----cceEEehhcCHHHHHHHH-------HhcCCCEEEEeccceeecccccCCCCcHHH----HHHHHHHHHHH
Confidence 999765 367777776666544433 34789999999999999877543 455665 67999999999
Q ss_pred HHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec-CCeEEEEEEeCCCCCCeeE-EEEEecCC
Q 019381 259 ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR-GEERICKVISSPCLAEAEA-RFQISAQG 336 (342)
Q Consensus 259 a~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~-~~~r~~~v~K~r~~~~~~~-~f~I~~~G 336 (342)
||+.|++++++-|+++ ++. -+|...++|++|++++|+-++ ...|.++-.|||++++.++ .|+++++|
T Consensus 206 AK~~~i~~fiVGHVTK--eG~---------IAGPrvLEHmVDtVlyFEGd~~~~~RiLR~vKNRFG~t~EiGvFeM~~~G 274 (456)
T COG1066 206 AKTKNIAIFIVGHVTK--EGA---------IAGPRVLEHMVDTVLYFEGDRHSRYRILRSVKNRFGATNELGVFEMTENG 274 (456)
T ss_pred HHHcCCeEEEEEEEcc--ccc---------ccCchheeeeeeEEEEEeccCCCceeeeehhcccCCcccceeEEEEecCC
Confidence 9999999999999999 653 368899999999999999875 4789999999999999885 89999999
Q ss_pred CCCCCC
Q 019381 337 VADVKD 342 (342)
Q Consensus 337 i~~~~~ 342 (342)
++++++
T Consensus 275 L~eV~n 280 (456)
T COG1066 275 LREVSN 280 (456)
T ss_pred eeEecC
Confidence 998864
No 20
>PRK09354 recA recombinase A; Provisional
Probab=99.97 E-value=3e-30 Score=236.11 Aligned_cols=220 Identities=27% Similarity=0.438 Sum_probs=177.4
Q ss_pred cccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~ 179 (342)
....++||++.||.+|+ ||+|+|.+++|+|+|||||||||++++.+++. .++.++|||+|.++++ ..++
T Consensus 37 ~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~------~G~~~~yId~E~s~~~----~~a~ 106 (349)
T PRK09354 37 DVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDP----VYAK 106 (349)
T ss_pred CCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEECCccchHH----HHHH
Confidence 46789999999999999 99999999999999999999999999998876 5789999999998776 4577
Q ss_pred HcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc-cccCCC-c--chHHHHHHHHHHHHHH
Q 019381 180 RYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR-TDFSGR-G--ELSARQMHLAKFLRSL 255 (342)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~-~--~~~~r~~~l~~i~~~L 255 (342)
.++++.+ ++.+.++.+.++....+ ..++....+++|||||++++++ .++.+. + ....+.+.+.+.++.|
T Consensus 107 ~lGvdld----~lli~qp~~~Eq~l~i~---~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L 179 (349)
T PRK09354 107 KLGVDID----NLLVSQPDTGEQALEIA---DTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKL 179 (349)
T ss_pred HcCCCHH----HeEEecCCCHHHHHHHH---HHHhhcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHH
Confidence 8898865 45677777766554444 4555667899999999999985 455432 1 1123334567778889
Q ss_pred HHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---------CCeEEEEEEeCCCCCC-
Q 019381 256 QKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE- 325 (342)
Q Consensus 256 k~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---------~~~r~~~v~K~r~~~~- 325 (342)
..+++++++++|+|||+...++. +| +++..|.||.++.|.+..++.++|.. |..+.++|+|++..|+
T Consensus 180 ~~~l~k~~itvI~tNQvr~~ig~--~~-g~pe~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~G~~~r~~vvKnk~~~p~ 256 (349)
T PRK09354 180 TGNISKSNTTVIFINQIREKIGV--MF-GNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNRTKVKVVKNKVAPPF 256 (349)
T ss_pred HHHHHHcCcEEEEEEeeeecccc--cc-CCCCcCCCchhhHhhheeeeEEecccccccCCceecceEEEEEEecccCCCC
Confidence 99999999999999999986653 45 56678999999999999999999864 3567899999998665
Q ss_pred eeEEEEEe-cCCCCCC
Q 019381 326 AEARFQIS-AQGVADV 340 (342)
Q Consensus 326 ~~~~f~I~-~~Gi~~~ 340 (342)
..+.|+|. .+||...
T Consensus 257 ~~a~~~i~~~~Gi~~~ 272 (349)
T PRK09354 257 KQAEFDIMYGEGISRE 272 (349)
T ss_pred CceEEEEEcCCccchh
Confidence 56899999 6898754
No 21
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.97 E-value=1.1e-29 Score=227.47 Aligned_cols=216 Identities=19% Similarity=0.291 Sum_probs=167.1
Q ss_pred cccccCChhhHhhh--------------cCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 103 IQITSGSRELDKIL--------------EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 103 ~~i~tg~~~LD~~l--------------~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
.+++||++.||++| +||+++|++++|+|+||+|||+||+|++.+.+. .+.+++|+++|++
T Consensus 2 ~~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~------~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 2 FGVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQAS------RGNPVLFVTVESP 75 (259)
T ss_pred CCccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHh------CCCcEEEEEecCC
Confidence 36899999999999 589999999999999999999999999988776 5779999999965
Q ss_pred CC--HHHHHHHHHHcCCChhhhhcceeEeecCCHH----HHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchH
Q 019381 169 FR--PQRLLQIADRYGLNGADVLENVAYARAYNTD----HQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 242 (342)
Q Consensus 169 ~~--~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~ 242 (342)
.. ..+++..+..++++.+.+.+++.+.+..+.. ....++..+...+...++++|||||++.++... .
T Consensus 76 ~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~-------~ 148 (259)
T TIGR03878 76 ANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAK-------E 148 (259)
T ss_pred chHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccc-------h
Confidence 32 1356666788999888777888887766532 344556666667777899999999999875421 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEee--------------
Q 019381 243 ARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKG-------------- 308 (342)
Q Consensus 243 ~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~-------------- 308 (342)
...++++..|..+++++++|+++++|.....+. + ...|+++..+++.+|.+|.|+..
T Consensus 149 ---~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~---~---~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~ 219 (259)
T TIGR03878 149 ---MMAREIVRQLFNFMKKWYQTALFVSQKRSGHEE---L---SAEAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKP 219 (259)
T ss_pred ---HHHHHHHHHHHHHHHHcCCeEEEEeccccCccc---c---cccccCCcceeEeeccEEEEeeeeccchhhhhhcccc
Confidence 113467777888889999999999997653221 1 11355666799999999999841
Q ss_pred -cCCeEEEEEEeCCCCCCe--eEEEEEecCCCCCC
Q 019381 309 -RGEERICKVISSPCLAEA--EARFQISAQGVADV 340 (342)
Q Consensus 309 -~~~~r~~~v~K~r~~~~~--~~~f~I~~~Gi~~~ 340 (342)
....|.+.|.|+|..++. ..+|+|+++||..+
T Consensus 220 ~~~~~R~l~I~KmRg~~h~~~~~~~~It~~Gi~~i 254 (259)
T TIGR03878 220 IGEIVRLFRIDGCRMCGHDTKTHVLEIDETGLVKI 254 (259)
T ss_pred ccceEEEEEEEEccCCCCCCceeEEEEcCCceEEe
Confidence 225689999999987654 47999999998765
No 22
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.97 E-value=5e-30 Score=233.07 Aligned_cols=221 Identities=26% Similarity=0.437 Sum_probs=176.0
Q ss_pred ccccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
.....++||++.||.+|+ ||+|+|.+++|+||||||||+||++++.+++. .+++|+|||+|..+++ ..+
T Consensus 31 ~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~------~g~~v~yId~E~~~~~----~~a 100 (321)
T TIGR02012 31 MDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDP----VYA 100 (321)
T ss_pred ccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEcccchhHH----HHH
Confidence 356789999999999999 99999999999999999999999999998876 4788999999988766 357
Q ss_pred HHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc-cccCCC-c--chHHHHHHHHHHHHH
Q 019381 179 DRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR-TDFSGR-G--ELSARQMHLAKFLRS 254 (342)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~-~--~~~~r~~~l~~i~~~ 254 (342)
+.++++.+ ++.+.++.+.++... .+...+....+++|||||++++++ .+..+. + ....+.+.+.++++.
T Consensus 101 ~~lGvd~~----~l~v~~p~~~eq~l~---~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~ 173 (321)
T TIGR02012 101 RKLGVDID----NLLVSQPDTGEQALE---IAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRK 173 (321)
T ss_pred HHcCCCHH----HeEEecCCCHHHHHH---HHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHH
Confidence 78888765 566777766655444 344555567899999999999985 344322 1 112333456788999
Q ss_pred HHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---------CCeEEEEEEeCCCCCC
Q 019381 255 LQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE 325 (342)
Q Consensus 255 Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---------~~~r~~~v~K~r~~~~ 325 (342)
|..+++++++++|+|||+...... +| +++..|.||.++.|.+..++.+++.. |..+.++|+||+..|+
T Consensus 174 L~~~l~~~~~tvi~tNQvr~~~g~--~~-~~~e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g~~~~~~v~Knk~~~p 250 (321)
T TIGR02012 174 LTGALSKSNTTAIFINQIREKIGV--MF-GNPETTTGGRALKFYASVRLDIRRIGQVKQGEEVVGNRTKVKVVKNKVAPP 250 (321)
T ss_pred HHHHHHhCCCEEEEEecceeccCc--cc-CCCccCcCccHHHHHHhHhHhhhhhhccccCCceeccEEEEEEEECCCCCC
Confidence 999999999999999999886553 45 56678999999999999999998753 3567899999998765
Q ss_pred -eeEEEEEe-cCCCCCC
Q 019381 326 -AEARFQIS-AQGVADV 340 (342)
Q Consensus 326 -~~~~f~I~-~~Gi~~~ 340 (342)
..++|+|. .+||...
T Consensus 251 ~~~~~~~i~~~~Gi~~~ 267 (321)
T TIGR02012 251 FKEAEFDILYGEGISKL 267 (321)
T ss_pred CCceEEEEEcCCccchh
Confidence 55899999 6898753
No 23
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.97 E-value=2.3e-29 Score=234.79 Aligned_cols=207 Identities=26% Similarity=0.433 Sum_probs=164.1
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||+++||++|+||+++|++++|.|+||+|||+|+++++...+. .+++|+|+++|.+ ...++..+++
T Consensus 60 ~~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~------~g~~VlYvs~EEs--~~qi~~Ra~r 131 (372)
T cd01121 60 EEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK------RGGKVLYVSGEES--PEQIKLRADR 131 (372)
T ss_pred ccCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEECCcC--HHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999987765 3578999999976 4556667778
Q ss_pred cCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCC-CcchHHHHHHHHHHHHHHHHHH
Q 019381 181 YGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSG-RGELSARQMHLAKFLRSLQKLA 259 (342)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~-~~~~~~r~~~l~~i~~~Lk~la 259 (342)
++.+.+ ++.+....+.+. +...+...++++|||||++.++..+..+ .+... .+++++..|++++
T Consensus 132 lg~~~~----~l~l~~e~~le~-------I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~----qvr~~~~~L~~la 196 (372)
T cd01121 132 LGISTE----NLYLLAETNLED-------ILASIEELKPDLVIIDSIQTVYSSELTSAPGSVS----QVRECTAELMRFA 196 (372)
T ss_pred cCCCcc----cEEEEccCcHHH-------HHHHHHhcCCcEEEEcchHHhhccccccCCCCHH----HHHHHHHHHHHHH
Confidence 887644 455554444332 2233345789999999999997654421 22222 3668889999999
Q ss_pred HHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecC-CeEEEEEEeCCCCCCee-EEEEEecCCC
Q 019381 260 DEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRG-EERICKVISSPCLAEAE-ARFQISAQGV 337 (342)
Q Consensus 260 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~-~~r~~~v~K~r~~~~~~-~~f~I~~~Gi 337 (342)
+++++++++++|+++ ++. .+++..++|++|++++|+..+. ..|.+++.|+|++++.+ ..|+|+++||
T Consensus 197 k~~~itvilvghvtk--~g~---------~aG~~~leh~vD~Vi~le~~~~~~~R~Lri~KnR~g~~~ei~~F~i~~~Gl 265 (372)
T cd01121 197 KERNIPIFIVGHVTK--EGS---------IAGPKVLEHMVDTVLYFEGDRHSEYRILRSVKNRFGSTNELGVFEMRENGL 265 (372)
T ss_pred HHcCCeEEEEeeccC--CCc---------ccCcccchhhceEEEEEEcCCCCcEEEEEEEeCCCCCCCCEEEEEECCCCe
Confidence 999999999999987 321 2456789999999999998764 68999999999998776 6899999999
Q ss_pred CCCC
Q 019381 338 ADVK 341 (342)
Q Consensus 338 ~~~~ 341 (342)
..+.
T Consensus 266 ~~v~ 269 (372)
T cd01121 266 REVS 269 (372)
T ss_pred EEcc
Confidence 8754
No 24
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.97 E-value=9.4e-29 Score=245.61 Aligned_cols=217 Identities=25% Similarity=0.437 Sum_probs=179.5
Q ss_pred hccccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHH
Q 019381 99 RLEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI 177 (342)
Q Consensus 99 ~~~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~ 177 (342)
+.....++||++.||.+|+ ||+++|.+++|+|+||+|||+||++++.+++. .+++|+||++|.++.+ .+
T Consensus 35 ~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~------~G~~v~yId~E~t~~~----~~ 104 (790)
T PRK09519 35 RQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA------AGGVAAFIDAEHALDP----DY 104 (790)
T ss_pred ccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEECCccchhH----HH
Confidence 3456789999999999998 89999999999999999999999999888775 5789999999998875 46
Q ss_pred HHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEecccccc-ccccCCCc---chHHHHHHHHHHHH
Q 019381 178 ADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALY-RTDFSGRG---ELSARQMHLAKFLR 253 (342)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~-~~~~~~~~---~~~~r~~~l~~i~~ 253 (342)
++++|++.+. +.+.++.+.+..... +...+...++++|||||+++++ +.++.+.. ....+.+.+..++.
T Consensus 105 A~~lGvDl~~----llv~~~~~~E~~l~~---i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~ 177 (790)
T PRK09519 105 AKKLGVDTDS----LLVSQPDTGEQALEI---ADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALR 177 (790)
T ss_pred HHHcCCChhH----eEEecCCCHHHHHHH---HHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHH
Confidence 7889998764 457777776654443 4455556789999999999999 46665431 22334455678889
Q ss_pred HHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEee---------cCCeEEEEEEeCCCCC
Q 019381 254 SLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKG---------RGEERICKVISSPCLA 324 (342)
Q Consensus 254 ~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~---------~~~~r~~~v~K~r~~~ 324 (342)
.|..+++++|+++|+|||+...++. +| +++..|.||.+|.|.+++||.|++. .|..|.++|.||+..|
T Consensus 178 ~L~~~l~~~nvtvi~TNQv~~~~g~--~f-g~p~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~~G~~~~~kv~ks~cLp 254 (790)
T PRK09519 178 KMTGALNNSGTTAIFINQLRDKIGV--MF-GSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVKNKCLA 254 (790)
T ss_pred HHHHHHHhCCCEEEEEecceecCCC--cC-CCCCcCCCCcccceeccEEEEeeeccccccCccccceEEEEEEEECCCCC
Confidence 9999999999999999999987764 67 6888999999999999999999974 2678999999999999
Q ss_pred CeeEEEEEecC
Q 019381 325 EAEARFQISAQ 335 (342)
Q Consensus 325 ~~~~~f~I~~~ 335 (342)
.+++.|.|+..
T Consensus 255 e~e~v~~i~tG 265 (790)
T PRK09519 255 EGTRIFDPVTG 265 (790)
T ss_pred CceEEEEecCC
Confidence 99989998743
No 25
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.97 E-value=8e-29 Score=237.25 Aligned_cols=208 Identities=25% Similarity=0.425 Sum_probs=163.4
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||++|+||+++|++++|+|+||+|||||+++++...+. .+.+|+|+++|++ ...++..+++
T Consensus 58 ~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~------~g~~vlYvs~Ees--~~qi~~ra~r 129 (446)
T PRK11823 58 EEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA------AGGKVLYVSGEES--ASQIKLRAER 129 (446)
T ss_pred cCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEcccc--HHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999988764 3678999999986 4456666788
Q ss_pred cCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCC-CcchHHHHHHHHHHHHHHHHHH
Q 019381 181 YGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSG-RGELSARQMHLAKFLRSLQKLA 259 (342)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~-~~~~~~r~~~l~~i~~~Lk~la 259 (342)
++.+.+ ++.+....+.+. +...+...++++|||||++.++..+..+ .+.. ..+++++..|++++
T Consensus 130 lg~~~~----~l~~~~e~~l~~-------i~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~----~qvr~~~~~L~~~a 194 (446)
T PRK11823 130 LGLPSD----NLYLLAETNLEA-------ILATIEEEKPDLVVIDSIQTMYSPELESAPGSV----SQVRECAAELMRLA 194 (446)
T ss_pred cCCChh----cEEEeCCCCHHH-------HHHHHHhhCCCEEEEechhhhccccccCCCCCH----HHHHHHHHHHHHHH
Confidence 887654 355554444332 2233445789999999999998765432 2222 23567888899999
Q ss_pred HHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEee-cCCeEEEEEEeCCCCCCee-EEEEEecCCC
Q 019381 260 DEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKG-RGEERICKVISSPCLAEAE-ARFQISAQGV 337 (342)
Q Consensus 260 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~-~~~~r~~~v~K~r~~~~~~-~~f~I~~~Gi 337 (342)
+++++++++++|+++ ++. .+++..|+|++|++++|+.. ....|.+++.|+|++++++ ..|+|+++||
T Consensus 195 k~~~itvilv~hvtk--~~~---------~ag~~~lehlvD~Vi~le~~~~~~~R~l~i~K~R~g~~~e~~~f~it~~Gi 263 (446)
T PRK11823 195 KQRGIAVFLVGHVTK--EGA---------IAGPRVLEHMVDTVLYFEGDRHSRYRILRAVKNRFGATNEIGVFEMTEQGL 263 (446)
T ss_pred HHcCCEEEEEeeccC--CCC---------cCCcchhhhhCeEEEEEEcCCCCceEEEEEccCCCCCCCceEEEEEcCCCc
Confidence 999999999999987 321 23556799999999999864 4578999999999998766 5899999999
Q ss_pred CCCCC
Q 019381 338 ADVKD 342 (342)
Q Consensus 338 ~~~~~ 342 (342)
..+.|
T Consensus 264 ~~v~~ 268 (446)
T PRK11823 264 REVSN 268 (446)
T ss_pred eECCC
Confidence 86543
No 26
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.96 E-value=1.2e-28 Score=236.20 Aligned_cols=208 Identities=27% Similarity=0.399 Sum_probs=163.6
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||++|+||+++|++++|+|+||+|||||+++++...+. .+++|+|+++|++ ...++..+++
T Consensus 72 ~~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~------~g~kvlYvs~EEs--~~qi~~ra~r 143 (454)
T TIGR00416 72 EVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK------NQMKVLYVSGEES--LQQIKMRAIR 143 (454)
T ss_pred ccCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEECcCC--HHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999887765 3568999999976 4456666778
Q ss_pred cCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCC-CcchHHHHHHHHHHHHHHHHHH
Q 019381 181 YGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSG-RGELSARQMHLAKFLRSLQKLA 259 (342)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~-~~~~~~r~~~l~~i~~~Lk~la 259 (342)
++.+.+ ++.+....+.+ .+...+...++++|||||++.++..+..+ .+...+ +++++..|.++|
T Consensus 144 lg~~~~----~l~~~~e~~~~-------~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q----~r~~~~~L~~~a 208 (454)
T TIGR00416 144 LGLPEP----NLYVLSETNWE-------QICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQ----VRECTAELMRLA 208 (454)
T ss_pred cCCChH----HeEEcCCCCHH-------HHHHHHHhcCCcEEEEecchhhcccccccCCCCHHH----HHHHHHHHHHHH
Confidence 887654 45555544432 23334455789999999999987654322 222332 457888999999
Q ss_pred HHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec-CCeEEEEEEeCCCCCCee-EEEEEecCCC
Q 019381 260 DEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR-GEERICKVISSPCLAEAE-ARFQISAQGV 337 (342)
Q Consensus 260 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~-~~~r~~~v~K~r~~~~~~-~~f~I~~~Gi 337 (342)
+++|+|+++++|+++ ++. .++...++|++|.+++|+..+ ...|.+++.|+|++++.+ ..|+|+++||
T Consensus 209 k~~giTvllt~hvtk--eg~---------~aG~~~le~lvD~VI~Le~~~~~~~R~L~v~K~R~g~~~e~~~f~it~~Gl 277 (454)
T TIGR00416 209 KTRGIAIFIVGHVTK--EGS---------IAGPKVLEHMVDTVLYFEGDRDSRFRILRSVKNRFGATNEIGIFEMTEQGL 277 (454)
T ss_pred HHhCCEEEEEecccc--CCc---------cCCcccEeeeceEEEEEeccCCCcEEEEEEecCCCCCCCcEEEEEEecCCc
Confidence 999999999999987 321 135567999999999999765 367999999999998876 6999999999
Q ss_pred CCCCC
Q 019381 338 ADVKD 342 (342)
Q Consensus 338 ~~~~~ 342 (342)
.++.|
T Consensus 278 ~~v~~ 282 (454)
T TIGR00416 278 REVLN 282 (454)
T ss_pred eecCC
Confidence 86654
No 27
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.96 E-value=1.2e-27 Score=212.20 Aligned_cols=207 Identities=18% Similarity=0.265 Sum_probs=158.4
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL 183 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 183 (342)
+++||++.||++++||+++|++++|+|+||||||+|+.+++.+.+. .+.+++|+++|.+ +..+.+.++.+++
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~------~ge~~lyvs~ee~--~~~i~~~~~~~g~ 73 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ------MGEPGIYVALEEH--PVQVRRNMAQFGW 73 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCcEEEEEeeCC--HHHHHHHHHHhCC
Confidence 5899999999999999999999999999999999999999988775 4789999999975 6666677788888
Q ss_pred Chhhhhc--ceeEeecCC----------------HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHH
Q 019381 184 NGADVLE--NVAYARAYN----------------TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQ 245 (342)
Q Consensus 184 ~~~~~~~--~i~~~~~~~----------------~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~ 245 (342)
+.+...+ ++.+.+..+ ...+.+.+..+...+...++++|||||++.++... ...
T Consensus 74 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~------~~~-- 145 (237)
T TIGR03877 74 DVRKYEEEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITK------PAM-- 145 (237)
T ss_pred CHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCC------hHH--
Confidence 7664432 344443321 23445566666677777889999999999986431 111
Q ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---CCeEEEEEEeCCC
Q 019381 246 MHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---GEERICKVISSPC 322 (342)
Q Consensus 246 ~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---~~~r~~~v~K~r~ 322 (342)
..+++..|+++++++|+|+++++|.+.... +.++..+++.+|.++.|+... ...|.+.|.|.|.
T Consensus 146 --~r~~l~~l~~~lk~~~~t~llt~~~~~~~~-----------~~~~~~~~~~~D~vI~L~~~~~~~~~~R~l~i~K~Rg 212 (237)
T TIGR03877 146 --ARSIVMQLKRVLSGLGCTSIFVSQVSVGER-----------GFGGPGVEHAVDGIIRLDLDEIDGELKRSLIVWKMRG 212 (237)
T ss_pred --HHHHHHHHHHHHHhCCCEEEEEECcccccc-----------cccccceEEEEeEEEEEEEEeeCCceEEEEEEEECCC
Confidence 225677788888999999999999875211 112345788999999998643 2478999999998
Q ss_pred CCCee--EEEEEecCCCCC
Q 019381 323 LAEAE--ARFQISAQGVAD 339 (342)
Q Consensus 323 ~~~~~--~~f~I~~~Gi~~ 339 (342)
.++.. .+|+|+++||+-
T Consensus 213 ~~~~~~~~~~~It~~Gi~v 231 (237)
T TIGR03877 213 TKHSMRRHPFEITDKGIIV 231 (237)
T ss_pred CCCCCceEEEEEcCCCEEE
Confidence 87654 799999999974
No 28
>PRK04328 hypothetical protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=213.35 Aligned_cols=208 Identities=18% Similarity=0.268 Sum_probs=160.2
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcC
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYG 182 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~ 182 (342)
.+++||++.||++|+||+|+|++++|+|+||+|||+||.+++.+.+. .+.+++|+++|.+ +..+.+.++.++
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~------~ge~~lyis~ee~--~~~i~~~~~~~g 74 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ------MGEPGVYVALEEH--PVQVRRNMRQFG 74 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEEeeCC--HHHHHHHHHHcC
Confidence 36899999999999999999999999999999999999999988766 4788999999975 666778889999
Q ss_pred CChhhhhc--ceeEeecCC----------------HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHH
Q 019381 183 LNGADVLE--NVAYARAYN----------------TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSAR 244 (342)
Q Consensus 183 ~~~~~~~~--~i~~~~~~~----------------~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r 244 (342)
++.+...+ ++.+.+... ...+...+..+...+...+++++||||++.++... ...
T Consensus 75 ~d~~~~~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~------~~~- 147 (249)
T PRK04328 75 WDVRKYEEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTK------PAM- 147 (249)
T ss_pred CCHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCC------hHH-
Confidence 88765543 344443321 23344556666677777889999999999886431 111
Q ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---CCeEEEEEEeCC
Q 019381 245 QMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---GEERICKVISSP 321 (342)
Q Consensus 245 ~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---~~~r~~~v~K~r 321 (342)
.++++..|.++++++|+|+++++|.... . .+.++....+.+|.++.|+... ...|.+.|.|.|
T Consensus 148 ---~r~~~~~l~~~lk~~g~t~llt~e~~~~--~---------~~~~~~~~~~~~D~vI~L~~~~~~~~~~R~l~I~K~R 213 (249)
T PRK04328 148 ---ARSIVMQLKRVLSGLGCTAIFVSQVSVG--E---------RGFGGPGVEHAVDGIIRLDLDEIDGELKRSLIVWKMR 213 (249)
T ss_pred ---HHHHHHHHHHHHHhCCCEEEEEECcccc--c---------cccCCCCcEEEEEEEEEEEEEecCCcEEEEEEEEEcc
Confidence 2356677777888999999999998751 1 1123445688999999998753 246899999999
Q ss_pred CCCCee--EEEEEecCCCCC
Q 019381 322 CLAEAE--ARFQISAQGVAD 339 (342)
Q Consensus 322 ~~~~~~--~~f~I~~~Gi~~ 339 (342)
..++.. .+|+|+++||.-
T Consensus 214 g~~~~~~~~~~~It~~Gi~v 233 (249)
T PRK04328 214 GTKHSMRRHPFEITDKGIVV 233 (249)
T ss_pred CCCCCCceEEEEEcCCCEEE
Confidence 887654 799999999863
No 29
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.95 E-value=1.5e-27 Score=210.38 Aligned_cols=207 Identities=22% Similarity=0.329 Sum_probs=156.4
Q ss_pred cccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC-CCceEEEecCCCCCHHHHHHHHHHcCC
Q 019381 105 ITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG-EGKAMYIDAEGTFRPQRLLQIADRYGL 183 (342)
Q Consensus 105 i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~-~~~vl~i~~e~~~~~~rl~~~~~~~~~ 183 (342)
++||++.||++++||+|+|++++|+|+||+|||+|++|++.+.+. . +.+|+|++++.+ +..+.+.++.+++
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~------~~ge~vlyvs~ee~--~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLK------NFGEKVLYVSFEEP--PEELIENMKSFGW 72 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------HHT--EEEEESSS---HHHHHHHHHTTTS
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhh------hcCCcEEEEEecCC--HHHHHHHHHHcCC
Confidence 589999999999999999999999999999999999999988877 5 788999999975 6777788889999
Q ss_pred Chhhhhcc--eeEeecCCH------HHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHH
Q 019381 184 NGADVLEN--VAYARAYNT------DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSL 255 (342)
Q Consensus 184 ~~~~~~~~--i~~~~~~~~------~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~L 255 (342)
+.+...++ +.+.+.... .....++..+...+...+++++||||++.+... .. . . .++.++..|
T Consensus 73 d~~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~-~~---~-~----~~r~~l~~l 143 (226)
T PF06745_consen 73 DLEEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLY-DD---P-E----ELRRFLRAL 143 (226)
T ss_dssp -HHHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS-SS---G-G----GHHHHHHHH
T ss_pred cHHHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc-CC---H-H----HHHHHHHHH
Confidence 88876654 666655443 234556666667777788899999999998221 11 1 1 134677888
Q ss_pred HHHHHHhCCEEEEEeccccccCCCcccCCCCccccCcccccc-ccceEEEEEeec---CCeEEEEEEeCCCCCC--eeEE
Q 019381 256 QKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAH-ASTTRLALRKGR---GEERICKVISSPCLAE--AEAR 329 (342)
Q Consensus 256 k~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~-~~d~~l~l~~~~---~~~r~~~v~K~r~~~~--~~~~ 329 (342)
....++.+++++++.|.....+ +.....+.+ .+|.++.|+... ...|.++|.|+|..++ +..+
T Consensus 144 ~~~l~~~~~t~llt~~~~~~~~-----------~~~~~~i~~~l~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~ 212 (226)
T PF06745_consen 144 IKFLKSRGVTTLLTSEMPSGSE-----------DDGTFGIEHYLADGVIELRYEEEGGRIRRRLRIVKMRGSRHSTGIHP 212 (226)
T ss_dssp HHHHHHTTEEEEEEEEESSSSS-----------SSSSTSHHHHHSSEEEEEEEEEETTEEEEEEEEEEETTS----BEEE
T ss_pred HHHHHHCCCEEEEEEccccCcc-----------cccccchhhhcccEEEEEEEEeeCCEEEEEEEEEEcCCCCCCCcEEE
Confidence 8888999999999998754222 224456777 999999999753 2478999999998765 4479
Q ss_pred EEEecCCCCC
Q 019381 330 FQISAQGVAD 339 (342)
Q Consensus 330 f~I~~~Gi~~ 339 (342)
|+|++.||+=
T Consensus 213 f~I~~~Gi~i 222 (226)
T PF06745_consen 213 FEITPGGIEI 222 (226)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCeEEE
Confidence 9999999864
No 30
>PRK08760 replicative DNA helicase; Provisional
Probab=99.95 E-value=1.1e-26 Score=224.02 Aligned_cols=216 Identities=13% Similarity=0.175 Sum_probs=155.2
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||.+++ |+++|++++|+|+||+|||+|++++|.+++.. .+.+|+||+.|++......+.++..
T Consensus 208 ~~~Gi~TG~~~LD~~t~-G~~~G~LivIaarPg~GKTafal~iA~~~a~~-----~g~~V~~fSlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 208 NITGLPTGYNDFDAMTA-GLQPTDLIILAARPAMGKTTFALNIAEYAAIK-----SKKGVAVFSMEMSASQLAMRLISSN 281 (476)
T ss_pred CCCcccCCcHHHHHHhc-CCCCCceEEEEeCCCCChhHHHHHHHHHHHHh-----cCCceEEEeccCCHHHHHHHHHHhh
Confidence 35689999999999986 89999999999999999999999999888753 3568999999987433222222221
Q ss_pred cCCC----------hhhh---------h-cceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcc
Q 019381 181 YGLN----------GADV---------L-ENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240 (342)
Q Consensus 181 ~~~~----------~~~~---------~-~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~ 240 (342)
-+++ .+++ + +.-.++.........++...++.+...+++++||||+++.+.... .
T Consensus 282 s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~-----~ 356 (476)
T PRK08760 282 GRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPG-----N 356 (476)
T ss_pred CCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCC-----C
Confidence 1121 1110 1 111233333333445555566666666789999999999774221 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCcccc-----CccccccccceEEEEEeecC-----
Q 019381 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPI-----GGNIMAHASTTRLALRKGRG----- 310 (342)
Q Consensus 241 ~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~-----~g~~~~~~~d~~l~l~~~~~----- 310 (342)
...|...+.++.+.||.+|++++|+||+++|+++..+.+ ..++|. .+..+++.+|.+++|+|+..
T Consensus 357 ~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r-----~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~ 431 (476)
T PRK08760 357 SENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETR-----TDKRPVMADLRESGAIEQDADMIVFIYRDDYYNKEN 431 (476)
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCEEEEeeccCcccccc-----CCCCCCHHHHhhccchhcCCCEEEEEechhhccccc
Confidence 134666789999999999999999999999999977653 234453 45679999999999998531
Q ss_pred ----CeEEEEEEeCCCCCCeeEEEEE
Q 019381 311 ----EERICKVISSPCLAEAEARFQI 332 (342)
Q Consensus 311 ----~~r~~~v~K~r~~~~~~~~f~I 332 (342)
....+.|.|+|++|.+.+.+..
T Consensus 432 ~~~~~~~eliiaKnR~G~~g~~~l~f 457 (476)
T PRK08760 432 SPDKGLAEIIIGKHRGGPTGSCKLKF 457 (476)
T ss_pred ccCCCceEEEEEccCCCCCceEEEEE
Confidence 2467999999999999865443
No 31
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.95 E-value=9.3e-27 Score=223.26 Aligned_cols=211 Identities=16% Similarity=0.213 Sum_probs=153.8
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.+++ |+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+|||.|++......+.++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~-----~g~~v~~fSlEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALR-----EGKPVLFFSLEMSAEQLGERLLASKS 247 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHHHHc
Confidence 4689999999999998 99999999999999999999999999887743 46789999999863332222233333
Q ss_pred CCChhhh--------------------h-cceeEeecCCHHHHHHHHHHHHHHhHhc-CceEEEEeccccccccccCCCc
Q 019381 182 GLNGADV--------------------L-ENVAYARAYNTDHQSRLLLEAASMMVET-RFALMIVDSATALYRTDFSGRG 239 (342)
Q Consensus 182 ~~~~~~~--------------------~-~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~~~~~ 239 (342)
+++...+ . .++ ++.......+.++...+......+ ++++||||+++.+... . +
T Consensus 248 ~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l-~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~--~--~ 322 (421)
T TIGR03600 248 GINTGNIRTGRFNDSDFNRLLNAVDRLSEKDL-YIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT--R--G 322 (421)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCE-EEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC--C--C
Confidence 3332211 0 123 333333334445555555554445 6999999999987532 1 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccc-----cCccccccccceEEEEEeecC----
Q 019381 240 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKP-----IGGNIMAHASTTRLALRKGRG---- 310 (342)
Q Consensus 240 ~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p-----~~g~~~~~~~d~~l~l~~~~~---- 310 (342)
..|...+..+.+.||.+|++++|+||+++|+++..+.. ..++| .++..+++.+|.+++|+|.+.
T Consensus 323 --~~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r-----~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~~~~~ 395 (421)
T TIGR03600 323 --RDRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKR-----TDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAR 395 (421)
T ss_pred --CCHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhc-----CCCCCChHHHhhcCCccccCcEEEEeccccccCCc
Confidence 23556789999999999999999999999999976652 22344 345678999999999998642
Q ss_pred ----CeEEEEEEeCCCCCCeeEEE
Q 019381 311 ----EERICKVISSPCLAEAEARF 330 (342)
Q Consensus 311 ----~~r~~~v~K~r~~~~~~~~f 330 (342)
....+.|.|+|++|++.+.+
T Consensus 396 ~~~~~~~el~v~K~R~G~~g~~~l 419 (421)
T TIGR03600 396 EPPAGVAELILAKNRHGPTGTVEL 419 (421)
T ss_pred cCCCCceEEEEECCCCCCCceEEe
Confidence 24579999999999998765
No 32
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.95 E-value=3.4e-26 Score=207.28 Aligned_cols=219 Identities=26% Similarity=0.405 Sum_probs=164.1
Q ss_pred ccccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
.....++||++.||.+|+ ||+|+|.+++|+|++++|||+|+++++++++. .++.++|||.|..+++ .++
T Consensus 29 ~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~------~g~~~a~ID~e~~ld~----~~a 98 (322)
T PF00154_consen 29 QNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK------QGGICAFIDAEHALDP----EYA 98 (322)
T ss_dssp CSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------TT-EEEEEESSS---H----HHH
T ss_pred cccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc------ccceeEEecCcccchh----hHH
Confidence 356789999999999999 99999999999999999999999999887766 4778999999999887 566
Q ss_pred HHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEecccccccc-ccCC---CcchHHHHHHHHHHHHH
Q 019381 179 DRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRT-DFSG---RGELSARQMHLAKFLRS 254 (342)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~-~~~~---~~~~~~r~~~l~~i~~~ 254 (342)
+.+|++.+ ++.+.++.+.++.....+ .++....+++||+||+..+.+. +..+ +.....+.+.+..+++.
T Consensus 99 ~~lGvdl~----rllv~~P~~~E~al~~~e---~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~ 171 (322)
T PF00154_consen 99 ESLGVDLD----RLLVVQPDTGEQALWIAE---QLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRK 171 (322)
T ss_dssp HHTT--GG----GEEEEE-SSHHHHHHHHH---HHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHH
T ss_pred HhcCcccc----ceEEecCCcHHHHHHHHH---HHhhcccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHH
Confidence 77898876 567888877776555444 4455567899999999999663 2221 12245567789999999
Q ss_pred HHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---------CCeEEEEEEeCCCC-C
Q 019381 255 LQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCL-A 324 (342)
Q Consensus 255 Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---------~~~r~~~v~K~r~~-~ 324 (342)
|..+..+.++++|++||++..... +| +.+....||..|.+.+++|+.+.+.+ |..-.++|.||+.. |
T Consensus 172 lt~~l~~~~~~~i~INQ~R~~ig~--~~-g~~~~t~GG~alkfyas~rl~i~k~~~ik~~~~~iG~~~~vkv~KnKva~P 248 (322)
T PF00154_consen 172 LTPLLSKSNTTLIFINQVRDKIGV--MF-GNPETTPGGRALKFYASVRLEIRKKEQIKEGDEVIGNKIKVKVVKNKVAPP 248 (322)
T ss_dssp HHHHHHTTT-EEEEEEEESSSSSS--SS-SSSSCCTSHHHHHHHCSEEEEEEEEEEEEETTCECEEEEEEEEEEESSS-T
T ss_pred HHHHHHhhceEEEEeehHHHHHhh--cc-CCCcCCCCCchhhhhhhhHHhhhcccccccCCcccccEEEEEEEEcccCCC
Confidence 999999999999999999997764 56 56677789999999999999999753 23467999999976 4
Q ss_pred CeeEEEEEec-CCCC
Q 019381 325 EAEARFQISA-QGVA 338 (342)
Q Consensus 325 ~~~~~f~I~~-~Gi~ 338 (342)
...+.|+|.. .||.
T Consensus 249 ~k~a~~~i~y~~Gid 263 (322)
T PF00154_consen 249 FKKAEFDIYYGRGID 263 (322)
T ss_dssp TEEEEEEEETTTEE-
T ss_pred cceeEEEEecCCeEC
Confidence 5668999986 6764
No 33
>PRK05595 replicative DNA helicase; Provisional
Probab=99.94 E-value=5.9e-26 Score=218.56 Aligned_cols=215 Identities=13% Similarity=0.183 Sum_probs=157.0
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.+++ |+.+|++++|+|+||+|||+|+.+++.+.+.. .+.+|+||+.|++......+.++...
T Consensus 181 ~~gi~tg~~~ld~~~~-G~~~g~liviaarpg~GKT~~al~ia~~~a~~-----~g~~vl~fSlEms~~~l~~R~~a~~~ 254 (444)
T PRK05595 181 TTGVASGFRELDAKTS-GFQKGDMILIAARPSMGKTTFALNIAEYAALR-----EGKSVAIFSLEMSKEQLAYKLLCSEA 254 (444)
T ss_pred CCcccCChHHHHHhcC-CCCCCcEEEEEecCCCChHHHHHHHHHHHHHH-----cCCcEEEEecCCCHHHHHHHHHHHhc
Confidence 4689999999999995 99999999999999999999999999876642 36789999999863332222233333
Q ss_pred CCChhhh-------------------h-c-ceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcc
Q 019381 182 GLNGADV-------------------L-E-NVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240 (342)
Q Consensus 182 ~~~~~~~-------------------~-~-~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~ 240 (342)
+++...+ + + ++ ++.......+.++...++.+...+++++||||+++.+.... .
T Consensus 255 ~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l-~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~-----~ 328 (444)
T PRK05595 255 NVDMLRLRTGNLEDKDWENIARASGPLAAAKI-FIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGK-----G 328 (444)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCE-EEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCC-----C
Confidence 3332211 1 1 23 23333333445555666666666889999999999874221 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCcccc-----CccccccccceEEEEEeecC-----
Q 019381 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPI-----GGNIMAHASTTRLALRKGRG----- 310 (342)
Q Consensus 241 ~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~-----~g~~~~~~~d~~l~l~~~~~----- 310 (342)
...|...+.++.+.||.+|++++|+||+++|+++..+.+ .+++|. .+..+++.+|.+++++|..-
T Consensus 329 ~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r-----~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~~~~~~ 403 (444)
T PRK05595 329 SESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQR-----ADHRPMLSDLRESGSIEQDADVVMFLYRDEYYNKET 403 (444)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhcc-----CCCCCchhhhhhhcccccCCCEEEEEeccccccccc
Confidence 235667799999999999999999999999999977652 234453 34678899999999998631
Q ss_pred ---CeEEEEEEeCCCCCCeeEEEEEe
Q 019381 311 ---EERICKVISSPCLAEAEARFQIS 333 (342)
Q Consensus 311 ---~~r~~~v~K~r~~~~~~~~f~I~ 333 (342)
....+.|.|+|++|++.++|...
T Consensus 404 ~~~~~~e~iv~K~R~G~~g~~~~~~~ 429 (444)
T PRK05595 404 EDKNVAECIIAKQRNGPTGTVKLAWL 429 (444)
T ss_pred CCCCceEEEEEccCCCCCceEEEEEe
Confidence 24689999999999998765543
No 34
>PHA02542 41 41 helicase; Provisional
Probab=99.94 E-value=7.6e-26 Score=217.18 Aligned_cols=216 Identities=14% Similarity=0.067 Sum_probs=152.3
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||.+++||+.+|++++|+|+||+|||+|++++|.+++. .+.+|+|||.|++......+.++..
T Consensus 168 ~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~------~g~~Vl~fSLEM~~~ql~~Rl~a~~ 241 (473)
T PHA02542 168 KANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQ------QGYNVLYISMEMAEEVIAKRIDANL 241 (473)
T ss_pred CCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHh------cCCcEEEEeccCCHHHHHHHHHHHH
Confidence 3678999999999999779999999999999999999999999988874 4678999999987433322333333
Q ss_pred cCCChhhhh-------------------cceeEee-cCCHHHHHHHHHHHHHHhHhcC--ceEEEEeccccccccccCCC
Q 019381 181 YGLNGADVL-------------------ENVAYAR-AYNTDHQSRLLLEAASMMVETR--FALMIVDSATALYRTDFSGR 238 (342)
Q Consensus 181 ~~~~~~~~~-------------------~~i~~~~-~~~~~~~~~~l~~l~~~~~~~~--~~lvviD~l~~l~~~~~~~~ 238 (342)
.+.+...+. .++.+.. +.......++...++.+....+ +++||||+++.+.......
T Consensus 242 ~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~- 320 (473)
T PHA02542 242 LDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRV- 320 (473)
T ss_pred cCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccC-
Confidence 444432221 1232221 2222223333333434333343 8999999999885322111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecC----CeEE
Q 019381 239 GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRG----EERI 314 (342)
Q Consensus 239 ~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~----~~r~ 314 (342)
....|...+.++.+.||.+|++++|+||+++|+++..+.+.. +.......+..+++.+|.+++|+|++. ....
T Consensus 321 -~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~d--P~lsDLreSG~IEqdAD~vl~l~r~~~~~~~~~~e 397 (473)
T PHA02542 321 -SSENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSD--VDMSDTAESAGLPATADFMLAVIETEELAQMGQQL 397 (473)
T ss_pred -CCCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCC--CcchhcccccchHhhcCEEEEEecCcccccCCeEE
Confidence 113466789999999999999999999999999998765310 111122455678999999999998652 4578
Q ss_pred EEEEeCCCCCCe
Q 019381 315 CKVISSPCLAEA 326 (342)
Q Consensus 315 ~~v~K~r~~~~~ 326 (342)
+.|.|+|++|.+
T Consensus 398 liv~KnR~G~~g 409 (473)
T PHA02542 398 VKQLKSRYGDKN 409 (473)
T ss_pred EEEecCCCCCCC
Confidence 999999999976
No 35
>PRK09165 replicative DNA helicase; Provisional
Probab=99.94 E-value=5.2e-26 Score=220.65 Aligned_cols=222 Identities=14% Similarity=0.195 Sum_probs=157.8
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC---------CCCCceEEEecCCCCCH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG---------GGEGKAMYIDAEGTFRP 171 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g---------~~~~~vl~i~~e~~~~~ 171 (342)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|++++|.+++....++ ..+.+|+||+.|++...
T Consensus 196 ~~~gi~TG~~~LD~~~g-G~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~q 274 (497)
T PRK09165 196 HLSGISTGLRDLDSKLG-GLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQ 274 (497)
T ss_pred CCCcccCChHHHhhhcC-CCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHH
Confidence 35689999999999996 999999999999999999999999998887532110 12578999999987433
Q ss_pred HHHHHHHHHcCCChhhhh--------------------cceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEecccccc
Q 019381 172 QRLLQIADRYGLNGADVL--------------------ENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 172 ~rl~~~~~~~~~~~~~~~--------------------~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
...+.++...+++...+. +.-.++.......+.++...++.+...+++++||||+++.+.
T Consensus 275 l~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 275 LATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred HHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcc
Confidence 333333443344322111 111233333333455555566666666889999999999875
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccc-----cCccccccccceEEEEE
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKP-----IGGNIMAHASTTRLALR 306 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p-----~~g~~~~~~~d~~l~l~ 306 (342)
..... ....|...+..+.+.||.+|++++|+||+++|+++..+.+ ..++| .++..+++.+|.+++|+
T Consensus 355 ~~~~~---~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r-----~~krP~lsDLr~Sg~IEqdAD~v~~l~ 426 (497)
T PRK09165 355 GSSKR---SSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQR-----DDKRPQLSDLRESGSIEQDADVVMFVY 426 (497)
T ss_pred CCCCC---CCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhcc-----CCCCCchhhhhhccchhccCCEEEEEe
Confidence 33210 0134666799999999999999999999999999977652 23344 34567899999999999
Q ss_pred eecC-------------------------CeEEEEEEeCCCCCCeeEEEE
Q 019381 307 KGRG-------------------------EERICKVISSPCLAEAEARFQ 331 (342)
Q Consensus 307 ~~~~-------------------------~~r~~~v~K~r~~~~~~~~f~ 331 (342)
|.+. ..-.+.|.|+|++|.+.+.+.
T Consensus 427 R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~g~~~~~ 476 (497)
T PRK09165 427 REEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTGTVKLA 476 (497)
T ss_pred ehhhhccccccccccchhhhhhhhhcccCCceEEEEeccCCCCCeeEEEE
Confidence 8521 235788999999999986543
No 36
>PRK08006 replicative DNA helicase; Provisional
Probab=99.94 E-value=8.9e-26 Score=217.05 Aligned_cols=215 Identities=16% Similarity=0.219 Sum_probs=155.3
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.+++ |+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+|||.|++......+.++..-
T Consensus 204 ~~Gi~TG~~~LD~~~~-Gl~~G~LiiIaarPgmGKTafalnia~~~a~~-----~g~~V~~fSlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 204 VTGVNTGYDDLNKKTA-GLQPSDLIIVAARPSMGKTTFAMNLCENAAML-----QDKPVLIFSLEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcccCCCHHHHHhhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCeEEEEeccCCHHHHHHHHHHHhc
Confidence 4679999999999996 99999999999999999999999999988753 35689999999874332222232221
Q ss_pred C----------CChhh----------hhc-ceeEeecCCHHHHHHHHHHHHHHhHhc-CceEEEEeccccccccccCCCc
Q 019381 182 G----------LNGAD----------VLE-NVAYARAYNTDHQSRLLLEAASMMVET-RFALMIVDSATALYRTDFSGRG 239 (342)
Q Consensus 182 ~----------~~~~~----------~~~-~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~~~~~ 239 (342)
+ ++.++ ++. ...++.........++...++.....+ ++++||||+++.+.....
T Consensus 278 ~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~---- 353 (471)
T PRK08006 278 RVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSL---- 353 (471)
T ss_pred CCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCC----
Confidence 1 11111 111 122444433344555555665555555 699999999998743211
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCcccc-----CccccccccceEEEEEeecC----
Q 019381 240 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPI-----GGNIMAHASTTRLALRKGRG---- 310 (342)
Q Consensus 240 ~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~-----~g~~~~~~~d~~l~l~~~~~---- 310 (342)
...|...+.++.+.||.+|++++|+||+++|+++..+.+ ..++|. ++..+++.+|.+++|+|.+.
T Consensus 354 -~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r-----~dkrP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~ 427 (471)
T PRK08006 354 -SDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQR-----ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHEN 427 (471)
T ss_pred -CCCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccc-----CCCCCchhhhhhcCcccccCCEEEEEecccccccc
Confidence 134556789999999999999999999999999987653 234454 34568999999999998641
Q ss_pred ----CeEEEEEEeCCCCCCeeEEEEE
Q 019381 311 ----EERICKVISSPCLAEAEARFQI 332 (342)
Q Consensus 311 ----~~r~~~v~K~r~~~~~~~~f~I 332 (342)
..-.+.|.|+|++|.+.+.|..
T Consensus 428 ~~~~g~~elivaKnR~G~~G~v~l~f 453 (471)
T PRK08006 428 SDLKGIAEIIIGKQRNGPIGTVRLTF 453 (471)
T ss_pred cCCCCceEEEEecccCCCCceEEEEE
Confidence 2357899999999999865543
No 37
>PRK05636 replicative DNA helicase; Provisional
Probab=99.94 E-value=9.9e-26 Score=218.00 Aligned_cols=215 Identities=13% Similarity=0.168 Sum_probs=156.5
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.+++ |+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+|||.|++......+.++..-
T Consensus 245 ~~Gi~TG~~~LD~~t~-Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~-----~g~~v~~fSlEMs~~ql~~R~ls~~s 318 (505)
T PRK05636 245 ATGIPTGFKDLDDLTN-GLRGGQMIIVAARPGVGKSTLALDFMRSASIK-----HNKASVIFSLEMSKSEIVMRLLSAEA 318 (505)
T ss_pred CCceecChHHHhhhcC-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEeeCCHHHHHHHHHHHhc
Confidence 4689999999999986 99999999999999999999999999887753 35689999999874333333333322
Q ss_pred CCC----------hhh----------hhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcch
Q 019381 182 GLN----------GAD----------VLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGEL 241 (342)
Q Consensus 182 ~~~----------~~~----------~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~ 241 (342)
+++ .++ +.+...++.......+.++...++.+...+++++||||+++.+-... ..
T Consensus 319 ~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~-----~~ 393 (505)
T PRK05636 319 EVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGK-----RV 393 (505)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCC-----CC
Confidence 221 111 11122333433333455555666666666889999999999874211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCcccc-----CccccccccceEEEEEeecC------
Q 019381 242 SARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPI-----GGNIMAHASTTRLALRKGRG------ 310 (342)
Q Consensus 242 ~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~-----~g~~~~~~~d~~l~l~~~~~------ 310 (342)
..|.+.+.++.+.||.+|++++|+||+++|+++..+.+ ..++|. .+..+++.+|.+++|+|.+.
T Consensus 394 ~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r-----~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y~~~~~ 468 (505)
T PRK05636 394 ESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESR-----TDKRPQLADLRESGSLEQDADMVMLLYRPDSQDKDDE 468 (505)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccc-----CCCCCcHHHHhhcccccccCCEEEEEecccccCCccC
Confidence 34667899999999999999999999999999977653 223454 34579999999999998631
Q ss_pred --CeEEEEEEeCCCCCCeeEEEEE
Q 019381 311 --EERICKVISSPCLAEAEARFQI 332 (342)
Q Consensus 311 --~~r~~~v~K~r~~~~~~~~f~I 332 (342)
..-.+.|.|+|++|++.+.+..
T Consensus 469 ~~g~~elivaK~RnG~~Gtv~l~f 492 (505)
T PRK05636 469 RAGEADIILAKHRGGPIDTVQVAH 492 (505)
T ss_pred CCCceEEEEecCCCCCCceEEEEe
Confidence 2457999999999999865433
No 38
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.94 E-value=1.9e-25 Score=200.87 Aligned_cols=215 Identities=17% Similarity=0.225 Sum_probs=147.8
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL 183 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 183 (342)
+++||++.||++++ |+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+||+.|++......+.++...++
T Consensus 1 Gi~TG~~~LD~~lg-G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~-----~~~~vly~SlEm~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 1 GIPTGFPALDRLLG-GLRPGELTVIAARPGVGKTAFALQIALNAALN-----GGYPVLYFSLEMSEEELAARLLARLSGV 74 (259)
T ss_dssp SB-SSTHHHHHHHS-SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHT-----TSSEEEEEESSS-HHHHHHHHHHHHHTS
T ss_pred CCCCChHHHHHHhc-CCCcCcEEEEEecccCCchHHHHHHHHHHHHh-----cCCeEEEEcCCCCHHHHHHHHHHHhhcc
Confidence 58999999999997 99999999999999999999999999998873 2478999999987433333334443333
Q ss_pred Chh--------------------hhhcceeEeecCCHHHHHHHHHHHHHHhHh-cCceEEEEeccccccccccCCCcchH
Q 019381 184 NGA--------------------DVLENVAYARAYNTDHQSRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELS 242 (342)
Q Consensus 184 ~~~--------------------~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~-~~~~lvviD~l~~l~~~~~~~~~~~~ 242 (342)
+.. .+.+...++.........++...+...... .++++||||+++.+-..... .
T Consensus 75 ~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~-----~ 149 (259)
T PF03796_consen 75 PYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSS-----D 149 (259)
T ss_dssp THHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSS-----S
T ss_pred hhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCC-----C
Confidence 221 111222233333333444444444455555 78999999999988654311 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccc-----cCccccccccceEEEEEeecC-------
Q 019381 243 ARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKP-----IGGNIMAHASTTRLALRKGRG------- 310 (342)
Q Consensus 243 ~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p-----~~g~~~~~~~d~~l~l~~~~~------- 310 (342)
.+...+..+++.||.+|++++++||+++|+++..+.. ..+.| .++..+++.+|.++.|++.+.
T Consensus 150 ~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~-----~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~ 224 (259)
T PF03796_consen 150 NRRQEIGEISRELKALAKELNIPVIALSQLNREAEDR-----EDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDD 224 (259)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGS-----SSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcc-----cccccchhhhhhhHHHHHHHhhhhhhccchhhccccCC
Confidence 2344588999999999999999999999999965432 22344 456778999999999998641
Q ss_pred -CeEEEEEEeCCCCCCeeEEEEEec
Q 019381 311 -EERICKVISSPCLAEAEARFQISA 334 (342)
Q Consensus 311 -~~r~~~v~K~r~~~~~~~~f~I~~ 334 (342)
..-.+.|.|+|+++.+.+.+....
T Consensus 225 ~~~~~l~v~KnR~G~~g~v~~~f~~ 249 (259)
T PF03796_consen 225 KGEAELIVAKNRNGPTGTVPLRFNP 249 (259)
T ss_dssp TTEEEEEEEEESSS--EEEEEEEET
T ss_pred CCeEEEEEEecCCCCCceEEEEEEC
Confidence 256789999999999887665543
No 39
>PRK07004 replicative DNA helicase; Provisional
Probab=99.94 E-value=8.4e-26 Score=217.26 Aligned_cols=215 Identities=15% Similarity=0.172 Sum_probs=155.1
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||++++ |+++|++++|+|+||+|||+|+++++.+++.. .+.+|+|||.|++-.....+.++..-
T Consensus 193 ~~gi~TG~~~LD~~t~-G~~~g~liviaarpg~GKT~~al~ia~~~a~~-----~~~~v~~fSlEM~~~ql~~R~la~~~ 266 (460)
T PRK07004 193 VTGTPTGFVDLDRMTS-GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE-----YGLPVAVFSMEMPGTQLAMRMLGSVG 266 (460)
T ss_pred CCCccCCcHHhccccc-CCCCCceEEEEeCCCCCccHHHHHHHHHHHHH-----cCCeEEEEeCCCCHHHHHHHHHHhhc
Confidence 4689999999999997 99999999999999999999999999887753 36789999999873332222222211
Q ss_pred CCC----------hhh----------hhcceeEeecCCHHHHHHHHHHHHHHhHhc-CceEEEEeccccccccccCCCcc
Q 019381 182 GLN----------GAD----------VLENVAYARAYNTDHQSRLLLEAASMMVET-RFALMIVDSATALYRTDFSGRGE 240 (342)
Q Consensus 182 ~~~----------~~~----------~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~~~~~~ 240 (342)
+++ .++ +.+...++.........++...++.+...+ ++++||||+++.+.... .
T Consensus 267 ~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~---~-- 341 (460)
T PRK07004 267 RLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSS---Q-- 341 (460)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCC---C--
Confidence 111 111 111223334333334455555555555544 48999999999885321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccc-----cCccccccccceEEEEEeecC-----
Q 019381 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKP-----IGGNIMAHASTTRLALRKGRG----- 310 (342)
Q Consensus 241 ~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p-----~~g~~~~~~~d~~l~l~~~~~----- 310 (342)
...|...+.++.+.||.+|++++|+||+++|+++..+.+ ..++| ..+..+++.+|.+++|+|.+.
T Consensus 342 ~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r-----~~krP~lsDLreSg~IeqdAD~v~~l~R~~~y~~~~ 416 (460)
T PRK07004 342 GENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQR-----PNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDS 416 (460)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhcc-----CCCCCChHHHhcchhhhhcCCEEEEeccccccCCCc
Confidence 134677899999999999999999999999999977652 23445 345568999999999998641
Q ss_pred ---CeEEEEEEeCCCCCCeeEEEEE
Q 019381 311 ---EERICKVISSPCLAEAEARFQI 332 (342)
Q Consensus 311 ---~~r~~~v~K~r~~~~~~~~f~I 332 (342)
..-.+.|.|+|++|++.+.+..
T Consensus 417 ~~~g~~e~ivaKnR~G~~G~v~l~f 441 (460)
T PRK07004 417 PDKGTAEIIIGKQRNGPIGPVRLTF 441 (460)
T ss_pred CCCCceEEEEEccCCCCCceEEEEE
Confidence 2357899999999999865443
No 40
>PRK06321 replicative DNA helicase; Provisional
Probab=99.94 E-value=1.6e-25 Score=215.11 Aligned_cols=218 Identities=17% Similarity=0.157 Sum_probs=158.3
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||++++ |+++|++++|+|+||+|||+|++++|.+++.. .+.+|+|||.|++......+.++..-
T Consensus 206 ~~Gi~tG~~~LD~~t~-Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~-----~g~~v~~fSLEMs~~ql~~Rlla~~s 279 (472)
T PRK06321 206 ISGIPTHFIDLDKMIN-GFSPSNLMILAARPAMGKTALALNIAENFCFQ-----NRLPVGIFSLEMTVDQLIHRIICSRS 279 (472)
T ss_pred CCccccCcHHHHHHhc-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-----cCCeEEEEeccCCHHHHHHHHHHhhc
Confidence 4689999999999997 99999999999999999999999999887753 35689999999874332222222222
Q ss_pred CCCh----------hh----------hhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcch
Q 019381 182 GLNG----------AD----------VLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGEL 241 (342)
Q Consensus 182 ~~~~----------~~----------~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~ 241 (342)
+++. ++ +.+...+++......+.++...++.....+++++||||+++.+-..... . ..
T Consensus 280 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~-~-~~ 357 (472)
T PRK06321 280 EVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNL-R-NS 357 (472)
T ss_pred CCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCcc-C-Cc
Confidence 2221 11 1112233444333345556666666666688999999999987432110 0 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCcccc-----CccccccccceEEEEEeecC------
Q 019381 242 SARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPI-----GGNIMAHASTTRLALRKGRG------ 310 (342)
Q Consensus 242 ~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~-----~g~~~~~~~d~~l~l~~~~~------ 310 (342)
..|...+.++.+.||.+|++++|+||+++|+++..+.+ ..++|. .+..+++.+|.+++|+|++.
T Consensus 358 ~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r-----~~krP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~~ 432 (472)
T PRK06321 358 ESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDR-----ANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPNDK 432 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhcc-----CCCCCCHHHHhhcccccccCCEEEEEechhhcCCcCC
Confidence 45667899999999999999999999999999987753 234554 35578999999999998531
Q ss_pred -CeEEEEEEeCCCCCCeeEEEEE
Q 019381 311 -EERICKVISSPCLAEAEARFQI 332 (342)
Q Consensus 311 -~~r~~~v~K~r~~~~~~~~f~I 332 (342)
..-.+.|.|+|++|++.+.|.-
T Consensus 433 ~~~~elivaKnR~G~~G~v~l~f 455 (472)
T PRK06321 433 PGTAELIVAKNRHGSIGSVPLVF 455 (472)
T ss_pred CCceEEEEEecCCCCCceEEEEE
Confidence 2468999999999999865544
No 41
>PRK06904 replicative DNA helicase; Validated
Probab=99.94 E-value=1.3e-25 Score=216.21 Aligned_cols=215 Identities=18% Similarity=0.235 Sum_probs=153.9
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.+++ |+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+|||.|++......+.++..-
T Consensus 201 ~~Gi~TG~~~LD~~t~-Gl~~G~LiiIaarPg~GKTafalnia~~~a~~-----~g~~Vl~fSlEMs~~ql~~Rlla~~s 274 (472)
T PRK06904 201 VTGVTTGFTDLDKKTA-GLQPSDLIIVAARPSMGKTTFAMNLCENAAMA-----SEKPVLVFSLEMPAEQIMMRMLASLS 274 (472)
T ss_pred CCCccCChHHHHHHHh-ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-----cCCeEEEEeccCCHHHHHHHHHHhhC
Confidence 4689999999999996 99999999999999999999999999988753 35689999999874332222232221
Q ss_pred C-----------CChhh---------hh-c-ceeEeecCCHHHHHHHHHHHHHHhHhc-CceEEEEeccccccccccCCC
Q 019381 182 G-----------LNGAD---------VL-E-NVAYARAYNTDHQSRLLLEAASMMVET-RFALMIVDSATALYRTDFSGR 238 (342)
Q Consensus 182 ~-----------~~~~~---------~~-~-~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~~~~ 238 (342)
+ ++.++ .+ + ...++.........++...++...... ++++||||+++.+.....
T Consensus 275 ~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~--- 351 (472)
T PRK06904 275 RVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGF--- 351 (472)
T ss_pred CCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCC---
Confidence 1 12111 11 1 112333333333445555555554444 689999999998743321
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCcccc-----CccccccccceEEEEEeecC---
Q 019381 239 GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPI-----GGNIMAHASTTRLALRKGRG--- 310 (342)
Q Consensus 239 ~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~-----~g~~~~~~~d~~l~l~~~~~--- 310 (342)
...|...+.++.+.||.+|++++|+||+++|+++..+.+ ..++|. ++..+++.+|.+++|+|.+-
T Consensus 352 --~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r-----~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~ 424 (472)
T PRK06904 352 --EDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENR-----GDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNE 424 (472)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhcc-----CCCCCchHHHhhcCccccCCcEEEEEeccccccC
Confidence 134666789999999999999999999999999987653 234453 35568999999999998631
Q ss_pred ------CeEEEEEEeCCCCCCeeEEEEE
Q 019381 311 ------EERICKVISSPCLAEAEARFQI 332 (342)
Q Consensus 311 ------~~r~~~v~K~r~~~~~~~~f~I 332 (342)
..-.+.|.|+|++|++.+.|..
T Consensus 425 ~~~~~~~~~elivaKnR~G~~G~v~l~f 452 (472)
T PRK06904 425 TTEDNKGVAEIIIGKQRNGPIGRVRLAF 452 (472)
T ss_pred ccccCCCceEEEEeccCCCCCceEEEEE
Confidence 2357899999999999865443
No 42
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.94 E-value=3.1e-25 Score=195.96 Aligned_cols=206 Identities=19% Similarity=0.299 Sum_probs=150.8
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL 183 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 183 (342)
+++||++.||++++||+++|++++|+|+||+|||+|+.+++.+++. .+.+++|+++|++ ...+...++.++.
T Consensus 1 ri~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~------~g~~~~~is~e~~--~~~i~~~~~~~g~ 72 (229)
T TIGR03881 1 RLSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR------DGDPVIYVTTEES--RESIIRQAAQFGM 72 (229)
T ss_pred CcCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEEccCC--HHHHHHHHHHhCC
Confidence 3789999999999999999999999999999999999999887765 3678999999976 5566667888888
Q ss_pred Chhhhhc--ceeEeecCC----------HHHHHHHHHHHHHHhHhc--CceEEEEeccccccccccCCCcchHHHHHHHH
Q 019381 184 NGADVLE--NVAYARAYN----------TDHQSRLLLEAASMMVET--RFALMIVDSATALYRTDFSGRGELSARQMHLA 249 (342)
Q Consensus 184 ~~~~~~~--~i~~~~~~~----------~~~~~~~l~~l~~~~~~~--~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~ 249 (342)
+.++..+ ++.+.+... .....++...+...+... +++++|||+++.++..+. .. .+
T Consensus 73 ~~~~~~~~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~------~~----~r 142 (229)
T TIGR03881 73 DFEKAIEEGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKP------AM----AR 142 (229)
T ss_pred CHHHHhhcCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccCh------HH----HH
Confidence 8776543 344433211 112334444444444443 578999999999864321 11 23
Q ss_pred HHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec--C-CeEEEEEEeCCCCCCe
Q 019381 250 KFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--G-EERICKVISSPCLAEA 326 (342)
Q Consensus 250 ~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--~-~~r~~~v~K~r~~~~~ 326 (342)
+++..|+.+++++++|+|+++|.....+. ..+...++.+|.++.|+... + ..|.+.|.|+|..++.
T Consensus 143 ~~~~~l~~~l~~~~~tvil~~~~~~~~~~-----------~~~~~~~~l~D~vI~L~~~~~~~~~~R~i~i~K~R~~~~~ 211 (229)
T TIGR03881 143 KYSYYLKRVLNRWNFTILLTSQYAITTSQ-----------AFGFGIEHVADGIIRFRKVVVDGELRRYLIVEKMRQTNHD 211 (229)
T ss_pred HHHHHHHHHHHhCCCEEEEEecccccCCC-----------CcccceEEEEeEEEEEEEeccCCcEEEEEEEEeccCCCCC
Confidence 66778888899999999999996531111 12234688999999999653 2 4689999999987654
Q ss_pred --eEEEEEec-CCCC
Q 019381 327 --EARFQISA-QGVA 338 (342)
Q Consensus 327 --~~~f~I~~-~Gi~ 338 (342)
..+|+|++ +||+
T Consensus 212 ~~~~~~~I~~~~Gi~ 226 (229)
T TIGR03881 212 KRAWEIDIVPGKGLV 226 (229)
T ss_pred CceeEEEEcCCCceE
Confidence 47999996 7986
No 43
>PRK08840 replicative DNA helicase; Provisional
Probab=99.94 E-value=2.6e-25 Score=213.52 Aligned_cols=215 Identities=14% Similarity=0.206 Sum_probs=155.5
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.+++ |+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+|||.|++......+.++..-
T Consensus 197 ~~gi~TG~~~LD~~~~-G~~~g~LiviaarPg~GKTafalnia~~~a~~-----~~~~v~~fSlEMs~~ql~~Rlla~~s 270 (464)
T PRK08840 197 VTGVDTGFTDLNKKTA-GLQGSDLIIVAARPSMGKTTFAMNLCENAAMD-----QDKPVLIFSLEMPAEQLMMRMLASLS 270 (464)
T ss_pred CCCcCCCcHHHHHhhc-CCCCCceEEEEeCCCCchHHHHHHHHHHHHHh-----CCCeEEEEeccCCHHHHHHHHHHhhC
Confidence 4689999999999996 89999999999999999999999999988753 35689999999874332222233222
Q ss_pred CC----------Chh----------hhhcc-eeEeecCCHHHHHHHHHHHHHHhHhc-CceEEEEeccccccccccCCCc
Q 019381 182 GL----------NGA----------DVLEN-VAYARAYNTDHQSRLLLEAASMMVET-RFALMIVDSATALYRTDFSGRG 239 (342)
Q Consensus 182 ~~----------~~~----------~~~~~-i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~~~~~ 239 (342)
++ +.+ .+.++ ..++.......+.++...++.+...+ ++++||||+++.+-....
T Consensus 271 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~---- 346 (464)
T PRK08840 271 RVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPAL---- 346 (464)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCC----
Confidence 22 111 11111 12333333334455556666655554 589999999998742211
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCcccc-----CccccccccceEEEEEeecC----
Q 019381 240 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPI-----GGNIMAHASTTRLALRKGRG---- 310 (342)
Q Consensus 240 ~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~-----~g~~~~~~~d~~l~l~~~~~---- 310 (342)
...|.+.+..+.+.||.+|++++|+||+++|+++..+.+ ..++|. ++..+++.+|.+++|+|.+.
T Consensus 347 -~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r-----~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~ 420 (464)
T PRK08840 347 -SDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQR-----ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNPD 420 (464)
T ss_pred -CCchHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccc-----CCCCCchHhhhhcccccccCCEEEEEecccccCCC
Confidence 134667899999999999999999999999999987653 234453 34578999999999998631
Q ss_pred ----CeEEEEEEeCCCCCCeeEEEEE
Q 019381 311 ----EERICKVISSPCLAEAEARFQI 332 (342)
Q Consensus 311 ----~~r~~~v~K~r~~~~~~~~f~I 332 (342)
..-.+.|.|+|++|++.+.|..
T Consensus 421 ~~~~~~~elivaKnR~G~~G~v~l~f 446 (464)
T PRK08840 421 SPLKGTAEIIIGKQRNGPIGSVRLTF 446 (464)
T ss_pred cCCCCceEEEEecccCCCCceEEEEE
Confidence 2367899999999999875544
No 44
>PRK08506 replicative DNA helicase; Provisional
Probab=99.94 E-value=9.1e-25 Score=210.94 Aligned_cols=213 Identities=13% Similarity=0.222 Sum_probs=152.3
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.+++ |+++|++++|+|+||+|||+|++++|.+++. .+.+|+|||.|++......+.++...
T Consensus 172 ~~Gi~TG~~~LD~~~~-G~~~G~LivIaarpg~GKT~fal~ia~~~~~------~g~~V~~fSlEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 172 IIGLDTGFVELNKMTK-GFNKGDLIIIAARPSMGKTTLCLNMALKALN------QDKGVAFFSLEMPAEQLMLRMLSAKT 244 (472)
T ss_pred CCcccCChHHHHhhcC-CCCCCceEEEEcCCCCChHHHHHHHHHHHHh------cCCcEEEEeCcCCHHHHHHHHHHHhc
Confidence 4689999999999985 9999999999999999999999999988764 46789999999873332222333323
Q ss_pred CCChhh--------------------hhcceeEeecCCHHHHHHHHHHHHHHhHhc-CceEEEEeccccccccccCCCcc
Q 019381 182 GLNGAD--------------------VLENVAYARAYNTDHQSRLLLEAASMMVET-RFALMIVDSATALYRTDFSGRGE 240 (342)
Q Consensus 182 ~~~~~~--------------------~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~~~~~~ 240 (342)
+++... +.+...++.......+.++...++.+...+ ++++||||+++.+.... .
T Consensus 245 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~-----~ 319 (472)
T PRK08506 245 SIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSG-----N 319 (472)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCC-----C
Confidence 332211 112223333333334555555555554443 58999999999774321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCcccc-----CccccccccceEEEEEeecCC----
Q 019381 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPI-----GGNIMAHASTTRLALRKGRGE---- 311 (342)
Q Consensus 241 ~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~-----~g~~~~~~~d~~l~l~~~~~~---- 311 (342)
...|...+..+.+.||.+|++++|+||+++|+++..+.+ ..++|. ++..+++.+|.+++|+|....
T Consensus 320 ~~~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r-----~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~ 394 (472)
T PRK08506 320 FKDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESR-----ADKRPMLSDLRESGAIEQDADIILFVYRDDVYKERE 394 (472)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhc-----cCCCCChHHhhcchhhhhcCCEEEEEeccccccccc
Confidence 134666789999999999999999999999999977642 223453 356799999999999986310
Q ss_pred --------------------------eEEEEEEeCCCCCCeeEEEE
Q 019381 312 --------------------------ERICKVISSPCLAEAEARFQ 331 (342)
Q Consensus 312 --------------------------~r~~~v~K~r~~~~~~~~f~ 331 (342)
.-.+.|.|+|++|.+.+.+.
T Consensus 395 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~G~v~l~ 440 (472)
T PRK08506 395 EKEKEKKAKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPTGTVKLR 440 (472)
T ss_pred ccccccccccccccccccccccccccceEEEEecCCCCCCceEEEE
Confidence 14589999999999886543
No 45
>PRK05748 replicative DNA helicase; Provisional
Probab=99.94 E-value=4e-25 Score=213.28 Aligned_cols=218 Identities=14% Similarity=0.180 Sum_probs=154.8
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++.. .+.+|+||+.|++......+.++..
T Consensus 182 ~~~gi~TG~~~LD~~~~-G~~~G~livIaarpg~GKT~~al~ia~~~a~~-----~g~~v~~fSlEms~~~l~~R~l~~~ 255 (448)
T PRK05748 182 DITGIPTGFTDLDKMTS-GLQPNDLIIVAARPSVGKTAFALNIAQNVATK-----TDKNVAIFSLEMGAESLVMRMLCAE 255 (448)
T ss_pred CCCCccCChHHHHHhcC-CCCCCceEEEEeCCCCCchHHHHHHHHHHHHh-----CCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 35689999999999997 99999999999999999999999999887753 3678999999987332222222221
Q ss_pred cCCChh----------h----------hhcceeEeecCCHHHHHHHHHHHHHHhHhc-CceEEEEeccccccccccCCCc
Q 019381 181 YGLNGA----------D----------VLENVAYARAYNTDHQSRLLLEAASMMVET-RFALMIVDSATALYRTDFSGRG 239 (342)
Q Consensus 181 ~~~~~~----------~----------~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~~~~~ 239 (342)
-+++.. + +.+.-.++.......+.++...++.....+ ++++||||+++.+-.....
T Consensus 256 ~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~--- 332 (448)
T PRK05748 256 GNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRS--- 332 (448)
T ss_pred cCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCC---
Confidence 122111 1 111112333333334445555666666666 7999999999987422111
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCcccc-----CccccccccceEEEEEeecC----
Q 019381 240 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPI-----GGNIMAHASTTRLALRKGRG---- 310 (342)
Q Consensus 240 ~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~-----~g~~~~~~~d~~l~l~~~~~---- 310 (342)
...|...+..+.+.||.+|++++|+||+++|+++..+.+ ..++|. ++..+++.+|.+++|+|.+-
T Consensus 333 -~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r-----~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~~~~~ 406 (448)
T PRK05748 333 -GENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQR-----QDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEE 406 (448)
T ss_pred -CcCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhc-----CCCCCChHHHHhhcchhcCCCEEEEEecccccCcc
Confidence 134667799999999999999999999999999966542 223453 35678999999999998641
Q ss_pred ----CeEEEEEEeCCCCCCeeEEEEEe
Q 019381 311 ----EERICKVISSPCLAEAEARFQIS 333 (342)
Q Consensus 311 ----~~r~~~v~K~r~~~~~~~~f~I~ 333 (342)
..-.+.|.|+|++|++.++|...
T Consensus 407 ~~~~~~~e~~v~K~R~G~~g~~~~~~~ 433 (448)
T PRK05748 407 TENKNTIEIIIAKQRNGPVGTVELAFQ 433 (448)
T ss_pred ccCCCceEEEEeccCCCCCceEEEEEe
Confidence 23578999999999998765543
No 46
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=3.5e-25 Score=206.94 Aligned_cols=217 Identities=16% Similarity=0.240 Sum_probs=169.5
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.++. |+.+|++++++|+||+|||+||+++|.+++.. .+.+|.+||.|++......+.++..-
T Consensus 176 ~~Gi~tgf~~LD~~t~-G~~~~dLii~AaRP~mGKTafalnia~n~a~~-----~~~~v~iFSLEM~~eql~~R~Ls~~s 249 (435)
T COG0305 176 LIGVPTGFTDLDEITS-GFRPGDLIIVAARPGMGKTALALNIALNAAAD-----GRKPVAIFSLEMSEEQLVMRLLSSES 249 (435)
T ss_pred CcccccCchhhHHHhc-CCccCCEEEEccCCCCChHHHHHHHHHHHHHh-----cCCCeEEEEccCCHHHHHHHhhcccc
Confidence 5799999999999999 79999999999999999999999999999884 45679999999874333333232211
Q ss_pred CCC----------hh----------hhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcch
Q 019381 182 GLN----------GA----------DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGEL 241 (342)
Q Consensus 182 ~~~----------~~----------~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~ 241 (342)
+++ .+ .+-+...++...+.....++..+++.+...+++++++||+++.+..... .
T Consensus 250 ~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~-----~ 324 (435)
T COG0305 250 GIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKK-----S 324 (435)
T ss_pred ccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeeccccc-----c
Confidence 111 11 1112234556666667777788888888889999999999999865421 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccC-----ccccccccceEEEEEeec-------
Q 019381 242 SARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIG-----GNIMAHASTTRLALRKGR------- 309 (342)
Q Consensus 242 ~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~-----g~~~~~~~d~~l~l~~~~------- 309 (342)
..|++++.++.+.||.+|++++++||..+|+++.++.+ .+++|.+ +.++++.+|.+++++|++
T Consensus 325 ~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R-----~dkrP~lSDLRESGsIEQDAD~VmflyRde~y~~~~~ 399 (435)
T COG0305 325 ENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQR-----TDKRPMLSDLRESGALEQDADIVIFLHRDEAYLKDTP 399 (435)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhc-----cccCCccccCccCCchhhhCCEEEEEechhhccCCCC
Confidence 67888999999999999999999999999999998873 3455544 446888999999999974
Q ss_pred -CCeEEEEEEeCCCCCCeeEEEEEec
Q 019381 310 -GEERICKVISSPCLAEAEARFQISA 334 (342)
Q Consensus 310 -~~~r~~~v~K~r~~~~~~~~f~I~~ 334 (342)
.....+.|.|+|++|.+.+.+....
T Consensus 400 ~~g~aeiIi~K~RnGp~GtV~l~f~~ 425 (435)
T COG0305 400 DRGEAEVIVAKNRNGPTGTVKLAFDP 425 (435)
T ss_pred CCceEEEEEEeccCCCCceEEEEEec
Confidence 1356899999999999987766554
No 47
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.94 E-value=6.9e-25 Score=211.31 Aligned_cols=217 Identities=15% Similarity=0.196 Sum_probs=154.7
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||.+++ |+++|++++|+|+||+|||+|+++++.+.+.. .+.+|+||+.|++.....-+.++..
T Consensus 174 ~~~gi~tG~~~LD~~~~-G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-----~g~~vl~~SlEm~~~~i~~R~~~~~ 247 (434)
T TIGR00665 174 GITGVPTGFTDLDKLTS-GLQPSDLIILAARPSMGKTAFALNIAENAAIK-----EGKPVAFFSLEMSAEQLAMRMLSSE 247 (434)
T ss_pred CCCcccCCchhhHhhcC-CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh-----CCCeEEEEeCcCCHHHHHHHHHHHh
Confidence 35689999999999996 99999999999999999999999999887752 3568999999986332221222222
Q ss_pred cCCCh----------hh----------hhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcc
Q 019381 181 YGLNG----------AD----------VLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240 (342)
Q Consensus 181 ~~~~~----------~~----------~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~ 240 (342)
.+++. ++ +.+...++.......+.++...+......+++++||||+++.+.....
T Consensus 248 ~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~----- 322 (434)
T TIGR00665 248 SRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR----- 322 (434)
T ss_pred cCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC-----
Confidence 22221 11 111122333332234455566666666678899999999998742211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccc-----cCccccccccceEEEEEeecC-----
Q 019381 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKP-----IGGNIMAHASTTRLALRKGRG----- 310 (342)
Q Consensus 241 ~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p-----~~g~~~~~~~d~~l~l~~~~~----- 310 (342)
...|...+..+++.||.+|++++|+||+++|+++..+.+ ...+| .++..+++.+|.+++|++.+-
T Consensus 323 ~~~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r-----~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~~~~~~ 397 (434)
T TIGR00665 323 SENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQR-----EDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNPDS 397 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhcc-----CCCCCChHHHhhccchhhcCCEEEEeccccccCCCc
Confidence 124556688999999999999999999999999966542 12334 345678999999999998641
Q ss_pred ---CeEEEEEEeCCCCCCeeEEEEEe
Q 019381 311 ---EERICKVISSPCLAEAEARFQIS 333 (342)
Q Consensus 311 ---~~r~~~v~K~r~~~~~~~~f~I~ 333 (342)
....+.|.|+|+++++.+.|.-.
T Consensus 398 ~~~~~~~l~v~KnR~G~~g~~~l~~~ 423 (434)
T TIGR00665 398 EDKGIAEIIIAKQRNGPTGTVKLAFQ 423 (434)
T ss_pred CCCCceEEEEecCCCCCCCeEEEEEe
Confidence 24689999999999988655443
No 48
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.93 E-value=3.1e-24 Score=188.91 Aligned_cols=207 Identities=21% Similarity=0.280 Sum_probs=148.1
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhh
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGAD 187 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~ 187 (342)
|++.||++++||+++|++++|+|+||+|||+||.+++.+.+. .+.+|+|+++|++ +..+.+.+..++.+.+.
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~------~g~~~~y~s~e~~--~~~l~~~~~~~~~~~~~ 72 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK------NGEKAMYISLEER--EERILGYAKSKGWDLED 72 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECCCC--HHHHHHHHHHcCCChHH
Confidence 789999999999999999999999999999999999988776 4778999999985 77777888889988776
Q ss_pred hhcc-eeEeecCCHH---HHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhC
Q 019381 188 VLEN-VAYARAYNTD---HQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 263 (342)
Q Consensus 188 ~~~~-i~~~~~~~~~---~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~ 263 (342)
..++ +.+.+..... ....+...+...+...+++++|||+++.+... .. +...+...+.+ .++.+ ++.|
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-~~---~~~~~r~~l~~---l~~~l-k~~~ 144 (224)
T TIGR03880 73 YIDKSLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLETL-FD---DDAERRTELFR---FYSSL-RETG 144 (224)
T ss_pred HHhCCeEEEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-cC---CHHHHHHHHHH---HHHHH-HhCC
Confidence 5554 4444432221 12334445556666788999999999987321 11 11223222333 33333 4679
Q ss_pred CEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec-C----CeEEEEEEeCCCCCC--eeEEEEEecCC
Q 019381 264 VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR-G----EERICKVISSPCLAE--AEARFQISAQG 336 (342)
Q Consensus 264 ~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~-~----~~r~~~v~K~r~~~~--~~~~f~I~~~G 336 (342)
+|+++++|.+..... +..-...++.+|.++.|+... + ..|.++|.|+|..++ +..+|+|+++|
T Consensus 145 ~tvll~s~~~~~~~~----------~~~~~~~~~l~D~vI~L~~~~~~~~~~~~r~l~v~K~Rg~~~~~~~~~~~i~~~G 214 (224)
T TIGR03880 145 VTTILTSEADKTNVF----------ASKYGLIEYLADGVIILKYVRNSDLRDVRLAVEVVKMRRSKHSREIKPYEITDSG 214 (224)
T ss_pred CEEEEEEcccCCCCC----------ccCCCceEEEEeEEEEEeeeecccCcceEEEEEEEEccCCCCCCceEEEEEcCCc
Confidence 999999998752110 001134789999999998543 2 346799999998765 44799999999
Q ss_pred CCCC
Q 019381 337 VADV 340 (342)
Q Consensus 337 i~~~ 340 (342)
|.-+
T Consensus 215 i~v~ 218 (224)
T TIGR03880 215 ITVY 218 (224)
T ss_pred EEEe
Confidence 9754
No 49
>PRK06749 replicative DNA helicase; Provisional
Probab=99.93 E-value=3e-24 Score=204.59 Aligned_cols=215 Identities=14% Similarity=0.147 Sum_probs=153.2
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|++++|.+++. .+.+|+|||.|++......+.++..
T Consensus 165 ~~~Gi~TG~~~LD~~t~-Gl~~G~LiiIaarPgmGKTafal~ia~~~a~------~g~~v~~fSlEMs~~ql~~R~ls~~ 237 (428)
T PRK06749 165 EITGIETGYTSLNKMTC-GLQEGDFVVLGARPSMGKTAFALNVGLHAAK------SGAAVGLFSLEMSSKQLLKRMASCV 237 (428)
T ss_pred CCCCccCCcHHHHHHhC-CCCCCcEEEEEeCCCCCchHHHHHHHHHHHh------cCCCEEEEEeeCCHHHHHHHHHHhc
Confidence 35689999999999987 9999999999999999999999999998875 4678999999987333222222222
Q ss_pred cCCChhhh---------------------hc--ceeEeecCCHHHHHHHHHHHHHHhHhcC--ceEEEEecccccccccc
Q 019381 181 YGLNGADV---------------------LE--NVAYARAYNTDHQSRLLLEAASMMVETR--FALMIVDSATALYRTDF 235 (342)
Q Consensus 181 ~~~~~~~~---------------------~~--~i~~~~~~~~~~~~~~l~~l~~~~~~~~--~~lvviD~l~~l~~~~~ 235 (342)
.+++...+ +. ++++ .......+.++...++.....++ +.+||||+++.+.....
T Consensus 238 ~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i-~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~ 316 (428)
T PRK06749 238 GEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEI-YDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDPK 316 (428)
T ss_pred cCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCC
Confidence 22211111 11 1223 33333334445555555555555 55999999997743110
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCcccc-----CccccccccceEEEEEeecC
Q 019381 236 SGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPI-----GGNIMAHASTTRLALRKGRG 310 (342)
Q Consensus 236 ~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~-----~g~~~~~~~d~~l~l~~~~~ 310 (342)
....|...+..+.+.||.+|++++|+||+++|+++..+++ ..++|. .+..+++.+|.+++|+|.+.
T Consensus 317 ----~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r-----~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~ 387 (428)
T PRK06749 317 ----HKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESR-----QDKRPLLSDLRETGQIEQDADVIMLMYREDY 387 (428)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccc-----CCCCCchHhhhhcccccccCCEEEEEeeccc
Confidence 1134667799999999999999999999999999987652 234453 34568999999999999641
Q ss_pred --------CeEEEEEEeCCCCCCeeEEEEE
Q 019381 311 --------EERICKVISSPCLAEAEARFQI 332 (342)
Q Consensus 311 --------~~r~~~v~K~r~~~~~~~~f~I 332 (342)
....+.|.|+|++|++.+.+..
T Consensus 388 y~~~~~~~~~~eliiaKnR~G~~G~v~~~f 417 (428)
T PRK06749 388 YDKETMQKEMTEIHVAKHRNGPVGSFKLRF 417 (428)
T ss_pred ccccccCCCceEEEEecCCCCCCceEEEEE
Confidence 2457899999999999865543
No 50
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.93 E-value=1.5e-24 Score=192.18 Aligned_cols=207 Identities=21% Similarity=0.280 Sum_probs=149.8
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
...++||++.||.+|+||+|+|++++|+|+||+|||+|+.+++...+. .+.+|+|+++|.+ +..+...+.++
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~------~g~~~~y~~~e~~--~~~~~~~~~~~ 75 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK------QGKKVYVITTENT--SKSYLKQMESV 75 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh------CCCEEEEEEcCCC--HHHHHHHHHHC
Confidence 457999999999999999999999999999999999999999887765 4789999999976 44555566788
Q ss_pred CCChhhhh--cceeEeec------CCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHH
Q 019381 182 GLNGADVL--ENVAYARA------YNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLR 253 (342)
Q Consensus 182 ~~~~~~~~--~~i~~~~~------~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~ 253 (342)
+++..+.. ..+.+... .........+..+...+...+++++||||++.+.... + . ..+.+++.
T Consensus 76 g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~-----~-~---~~~~~~l~ 146 (234)
T PRK06067 76 KIDISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA-----E-E---DDILNFLT 146 (234)
T ss_pred CCChhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC-----C-H---HHHHHHHH
Confidence 88766542 22333221 1123344566666677777789999999999764321 0 1 12456666
Q ss_pred HHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec--C-CeEEEEEEeCCCCCC---ee
Q 019381 254 SLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--G-EERICKVISSPCLAE---AE 327 (342)
Q Consensus 254 ~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--~-~~r~~~v~K~r~~~~---~~ 327 (342)
.|+.+++ .++++++++|....... ....+.+++|.++.|+... + ..|.+.|.|.|..++ +.
T Consensus 147 ~l~~l~~-~g~tvllt~~~~~~~~~------------~~~~~~~l~DgvI~L~~~~~~~~~~r~l~i~K~Rg~~~~~~~~ 213 (234)
T PRK06067 147 EAKNLVD-LGKTILITLHPYAFSEE------------LLSRIRSICDVYLKLRAEQIGGRYVKVLEVVKLRGARKTTGNI 213 (234)
T ss_pred HHHHHHh-CCCEEEEEecCCcCCHH------------HHHHHHhheEEEEEEEeeccCCEEeEEEEEEhhcCCCCCCCCE
Confidence 7776665 48899999886442111 1134678889999998754 2 468899999997654 44
Q ss_pred EEEEEec-CCCC
Q 019381 328 ARFQISA-QGVA 338 (342)
Q Consensus 328 ~~f~I~~-~Gi~ 338 (342)
.+|+|++ .||.
T Consensus 214 ~~~~I~~~~Gi~ 225 (234)
T PRK06067 214 ISFDVDPAFGIK 225 (234)
T ss_pred EEEEEcCCCCeE
Confidence 7999998 5986
No 51
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.93 E-value=1.8e-24 Score=195.91 Aligned_cols=219 Identities=11% Similarity=0.124 Sum_probs=151.0
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH-HH-
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA-DR- 180 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~-~~- 180 (342)
.+++||++.||.++ ||+++|++++|+|+||+|||+|+.+++.+++.. .+.+|+||++|++ ..++...+ ..
T Consensus 11 ~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-----~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 11 EEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLITQ-----HGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred cCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-----cCceEEEEEcccC--HHHHHHHHHHHH
Confidence 38999999999999 599999999999999999999999999887752 2678999999986 33332222 11
Q ss_pred cCCCh------------------hhhh--cceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcc
Q 019381 181 YGLNG------------------ADVL--ENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240 (342)
Q Consensus 181 ~~~~~------------------~~~~--~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~ 240 (342)
.+.+. +.+. .++.+...........++..+...+..+++++||||+++.+......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~---- 158 (271)
T cd01122 83 AGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERA---- 158 (271)
T ss_pred hCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCC----
Confidence 12211 1111 23444443333345556666666666788999999999998653211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccC---CCCccccCccccccccceEEEEEeecC------C
Q 019381 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFA---GPQIKPIGGNIMAHASTTRLALRKGRG------E 311 (342)
Q Consensus 241 ~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~---~~~~~p~~g~~~~~~~d~~l~l~~~~~------~ 311 (342)
...+...+..++..|+.+|++++++|++++|+++......... +......++..+.+.+|.++.|++... .
T Consensus 159 ~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~e~~~~~ 238 (271)
T cd01122 159 SGDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAELDERN 238 (271)
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCccccccCC
Confidence 1233445778999999999999999999999998443210000 011123456678999999999998542 4
Q ss_pred eEEEEEEeCCCC-CCee-EEEEEe
Q 019381 312 ERICKVISSPCL-AEAE-ARFQIS 333 (342)
Q Consensus 312 ~r~~~v~K~r~~-~~~~-~~f~I~ 333 (342)
.|.++|.|+|++ +.+. +++..+
T Consensus 239 ~~~i~v~K~R~~~~~g~~~~~~~~ 262 (271)
T cd01122 239 TTYLRILKNRFTGGTGVAGPLEYD 262 (271)
T ss_pred cEEEEEEeeccCCCccceeeEEEE
Confidence 688999999985 6664 344433
No 52
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.93 E-value=2.2e-24 Score=209.51 Aligned_cols=212 Identities=22% Similarity=0.236 Sum_probs=160.3
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||++|+||+++|++++|.|+||+|||+|++|++.+++. .+.+++|+++|.+ +..+...++++
T Consensus 242 ~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~------~ge~~~y~s~eEs--~~~i~~~~~~l 313 (484)
T TIGR02655 242 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA------NKERAILFAYEES--RAQLLRNAYSW 313 (484)
T ss_pred ccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEEeeCC--HHHHHHHHHHc
Confidence 447999999999999999999999999999999999999999998876 5679999999986 67777888999
Q ss_pred CCChhhhhcc--eeEeecCC-HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHH
Q 019381 182 GLNGADVLEN--VAYARAYN-TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKL 258 (342)
Q Consensus 182 ~~~~~~~~~~--i~~~~~~~-~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~l 258 (342)
|++.+...+. +.+..... .....+.+..+...+...++++|||||++.+... .. ..+ .++++..|.++
T Consensus 314 g~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~-~~----~~~----~r~~~~~l~~~ 384 (484)
T TIGR02655 314 GIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARG-VS----NNA----FRQFVIGVTGY 384 (484)
T ss_pred CCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHh-cC----HHH----HHHHHHHHHHH
Confidence 9987754432 44443221 1223456666667777789999999999998653 21 111 24566778888
Q ss_pred HHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec--C-CeEEEEEEeCCCCCCee--EEEEEe
Q 019381 259 ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--G-EERICKVISSPCLAEAE--ARFQIS 333 (342)
Q Consensus 259 a~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--~-~~r~~~v~K~r~~~~~~--~~f~I~ 333 (342)
+++.++|+++++........ .+......++++|.++.|+..+ + -.|.+.|.|+|..++.. .+|+|+
T Consensus 385 lk~~~it~~~t~~~~~~~~~---------~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~K~R~~~~~~~~~~~~It 455 (484)
T TIGR02655 385 AKQEEITGFFTNTSDQFMGS---------HSITDSHISTITDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGIREFMIS 455 (484)
T ss_pred HhhCCCeEEEeecccccccC---------CccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEEEccCCCCCCceEEEEEc
Confidence 89999999999766542111 0112234688999999998654 3 35779999999887643 699999
Q ss_pred cCCCCC
Q 019381 334 AQGVAD 339 (342)
Q Consensus 334 ~~Gi~~ 339 (342)
++||+-
T Consensus 456 ~~Gi~v 461 (484)
T TIGR02655 456 DKGPEI 461 (484)
T ss_pred CCcEEE
Confidence 999864
No 53
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.93 E-value=3.9e-24 Score=190.48 Aligned_cols=209 Identities=16% Similarity=0.148 Sum_probs=144.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhh-
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVL- 189 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~- 189 (342)
+||.+++ |+++|++++|+|+||+|||+|+.+++.+.+.. .+.+|+||+.|++.....-+.++...+.+...+.
T Consensus 2 ~LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-----~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~ 75 (242)
T cd00984 2 DLDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAKK-----QGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRT 75 (242)
T ss_pred chhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhc
Confidence 5899997 99999999999999999999999999988873 2678999999986332222222344444332111
Q ss_pred -------------------c-ceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHH
Q 019381 190 -------------------E-NVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLA 249 (342)
Q Consensus 190 -------------------~-~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~ 249 (342)
. ++.+.. .......++...+......+++++||||+++.+.... . ...+...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~-~----~~~~~~~~~ 149 (242)
T cd00984 76 GSLSDEDWERLAEAIGELKELPIYIDD-SSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK-K----KGNRQQEVA 149 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEeC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC-C----CCCHHHHHH
Confidence 1 222222 1222344455555566666799999999999875432 0 123445578
Q ss_pred HHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec--------CCeEEEEEEeCC
Q 019381 250 KFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--------GEERICKVISSP 321 (342)
Q Consensus 250 ~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--------~~~r~~~v~K~r 321 (342)
.+++.|+.+|+++++++++++|+++...+...-.+....-.++..+.+.+|.++.|.+.+ ...-.+.|.|+|
T Consensus 150 ~~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR 229 (242)
T cd00984 150 EISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVAKNR 229 (242)
T ss_pred HHHHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccccccccCCCCceEEEEECCC
Confidence 999999999999999999999999854321000000112245567899999999999874 234689999999
Q ss_pred CCCCeeEEEE
Q 019381 322 CLAEAEARFQ 331 (342)
Q Consensus 322 ~~~~~~~~f~ 331 (342)
+++.+.+.+.
T Consensus 230 ~G~~g~~~l~ 239 (242)
T cd00984 230 NGPTGTVELR 239 (242)
T ss_pred CCCCeeEEEE
Confidence 9999887654
No 54
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.92 E-value=1e-23 Score=206.88 Aligned_cols=213 Identities=18% Similarity=0.244 Sum_probs=155.8
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||++++||+|+|++++|+|+||+|||+|+++++.+.+.. .+.+|+||++|++ +..+.+.+..
T Consensus 9 ~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-----~ge~~lyis~ee~--~~~i~~~~~~ 81 (509)
T PRK09302 9 GIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKR-----FDEPGVFVTFEES--PEDIIRNVAS 81 (509)
T ss_pred CCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCCEEEEEccCC--HHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999888762 1678999999986 6777777888
Q ss_pred cCCChhhhhc--ceeEeecCC---------HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHH
Q 019381 181 YGLNGADVLE--NVAYARAYN---------TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLA 249 (342)
Q Consensus 181 ~~~~~~~~~~--~i~~~~~~~---------~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~ 249 (342)
++++.+.+.. ++.+..... ......++..+...+...+++.+||||++.++.... .... ++
T Consensus 82 ~g~d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d----~~~~----~r 153 (509)
T PRK09302 82 FGWDLQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFS----NEAV----VR 153 (509)
T ss_pred cCCCHHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhcc----CHHH----HH
Confidence 9988776543 244433221 112345566677777778899999999998754211 1111 23
Q ss_pred HHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec--C-CeEEEEEEeCCCCCCe
Q 019381 250 KFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--G-EERICKVISSPCLAEA 326 (342)
Q Consensus 250 ~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--~-~~r~~~v~K~r~~~~~ 326 (342)
..+..|.+.+++.++|+|+++|.......- ..-....+.+|.++.|.... + ..|.+.|.|.|..++.
T Consensus 154 ~~l~~L~~~Lk~~g~TvLlt~~~~~~~~~~----------~~~~~~~~laDgVI~L~~~~~~~~~~R~l~I~K~Rg~~~~ 223 (509)
T PRK09302 154 RELRRLFAWLKQKGVTAVITGERGDEYGPL----------TRYGVEEFVSDCVIILRNRLEGEKRTRTLRILKYRGTTHG 223 (509)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCccCcCCc----------cccCceEEEeeEEEEEeEEccCCeEEEEEEEEECCCCCcC
Confidence 444555555677899999999876421110 00113467999999998643 2 3699999999987654
Q ss_pred --eEEEEEecCCCC
Q 019381 327 --EARFQISAQGVA 338 (342)
Q Consensus 327 --~~~f~I~~~Gi~ 338 (342)
..+|+|+++||.
T Consensus 224 ~~~~~f~I~~~Gi~ 237 (509)
T PRK09302 224 KNEYPFTITEDGIS 237 (509)
T ss_pred CccEEEEECCCcEE
Confidence 479999999987
No 55
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.92 E-value=1.3e-23 Score=206.22 Aligned_cols=211 Identities=19% Similarity=0.220 Sum_probs=159.1
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
...++||++.||++++||+++|++++|.|+||+|||+|+.+++.+.+. .+.+++|+++|.+ +..+...+..+
T Consensus 252 ~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~------~g~~~~yis~e~~--~~~i~~~~~~~ 323 (509)
T PRK09302 252 NERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR------RGERCLLFAFEES--RAQLIRNARSW 323 (509)
T ss_pred cccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh------CCCcEEEEEecCC--HHHHHHHHHHc
Confidence 457999999999999999999999999999999999999999988776 5789999999976 66677778889
Q ss_pred CCChhhhhcc--eeEeecC-CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHH
Q 019381 182 GLNGADVLEN--VAYARAY-NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKL 258 (342)
Q Consensus 182 ~~~~~~~~~~--i~~~~~~-~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~l 258 (342)
+++.++..++ +.+.... ........+..+...+...++++|||||++.++.... . ..+.+++..|..+
T Consensus 324 g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~~------~---~~~~~~l~~l~~~ 394 (509)
T PRK09302 324 GIDLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGS------L---NEFRQFVIRLTDY 394 (509)
T ss_pred CCChHHHhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhCC------H---HHHHHHHHHHHHH
Confidence 9887765432 2232221 1112334455566666678899999999999865321 1 1245777788888
Q ss_pred HHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec--C-CeEEEEEEeCCCCCC--eeEEEEEe
Q 019381 259 ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--G-EERICKVISSPCLAE--AEARFQIS 333 (342)
Q Consensus 259 a~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--~-~~r~~~v~K~r~~~~--~~~~f~I~ 333 (342)
++++|+|+|+++|........ +.....+++++|.++.|++.. + ..|.+.|.|+|..++ ...+|+|+
T Consensus 395 ~k~~~~t~l~t~~~~~~~g~~---------~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~It 465 (509)
T PRK09302 395 LKSEEITGLFTNLTPDFMGSH---------SITESHISSLTDTWILLQYVEINGEMNRALYVLKMRGSWHSNQIREFVIT 465 (509)
T ss_pred HHhCCCeEEEEeccccccCCC---------CCCcCceEEeeeEEEEEEEeecCCeeEEEEEEEEcCCCCCCCceEEEEEe
Confidence 999999999999876522110 011124789999999999754 2 468999999997654 44799999
Q ss_pred cCCCC
Q 019381 334 AQGVA 338 (342)
Q Consensus 334 ~~Gi~ 338 (342)
++||.
T Consensus 466 ~~Gi~ 470 (509)
T PRK09302 466 DKGIH 470 (509)
T ss_pred CCcEE
Confidence 99985
No 56
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.92 E-value=2.2e-23 Score=202.57 Aligned_cols=209 Identities=19% Similarity=0.278 Sum_probs=151.0
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL 183 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 183 (342)
+++||++.||++++|||++|.+++|.|+||||||+||+|++.+.+.. .+.+++||++|.+ +..+...++++++
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-----~ge~~lyvs~eE~--~~~l~~~~~~~G~ 74 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-----FDEPGVFVTFEES--PQDIIKNARSFGW 74 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEecC--HHHHHHHHHHcCC
Confidence 58999999999999999999999999999999999999999887662 2678999999965 7778888999999
Q ss_pred Chhhhhc--ceeEeecCCH---------HHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHH
Q 019381 184 NGADVLE--NVAYARAYNT---------DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFL 252 (342)
Q Consensus 184 ~~~~~~~--~i~~~~~~~~---------~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~ 252 (342)
+.+...+ ++.+.+.... ..+...+..+...+...+++.|+||+++.++... . ...... ..+.
T Consensus 75 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~-~---~~~~~r---~~l~ 147 (484)
T TIGR02655 75 DLQKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQY-D---AVSVVR---REIF 147 (484)
T ss_pred CHHHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhc-C---chHHHH---HHHH
Confidence 8775542 3444432211 1334556666667777889999999998875421 0 111111 2334
Q ss_pred HHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCcccc-ccccceEEEEEeec-C--CeEEEEEEeCCCCCC--e
Q 019381 253 RSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIM-AHASTTRLALRKGR-G--EERICKVISSPCLAE--A 326 (342)
Q Consensus 253 ~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~-~~~~d~~l~l~~~~-~--~~r~~~v~K~r~~~~--~ 326 (342)
+.++.+ ++.++|+|+++|........ ....+ ++++|.++.|+... + ..|.++|.|.|..++ +
T Consensus 148 ~Li~~L-~~~g~TvLLtsh~~~~~~~~-----------~~~~~~e~laDgVI~L~~~~~~~~~~R~l~I~K~Rgs~~~~~ 215 (484)
T TIGR02655 148 RLVARL-KQIGVTTVMTTERIEEYGPI-----------ARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKG 215 (484)
T ss_pred HHHHHH-HHCCCEEEEEecCccccccc-----------ccCCceeEeeeeEEEEEEEecCCEEEEEEEEEECCCCCcCCc
Confidence 444444 45699999999986522110 11123 78999999998532 2 358999999998765 4
Q ss_pred eEEEEEecCCCC
Q 019381 327 EARFQISAQGVA 338 (342)
Q Consensus 327 ~~~f~I~~~Gi~ 338 (342)
..+|+|+++||+
T Consensus 216 ~~~~~It~~Gi~ 227 (484)
T TIGR02655 216 EYPFTITDHGIN 227 (484)
T ss_pred eEEEEEcCCcEE
Confidence 479999999987
No 57
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.88 E-value=3.4e-21 Score=169.60 Aligned_cols=207 Identities=19% Similarity=0.251 Sum_probs=142.7
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcC
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYG 182 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~ 182 (342)
..+.++++.||++++||+++|++++|.|+||+|||+|+.+++...+. .+.+++|++++.+ +..+...+++++
T Consensus 4 ~~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~------~g~~~~yi~~e~~--~~~~~~~~~~~g 75 (230)
T PRK08533 4 AKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ------NGYSVSYVSTQLT--TTEFIKQMMSLG 75 (230)
T ss_pred EEEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh------CCCcEEEEeCCCC--HHHHHHHHHHhC
Confidence 45789999999999999999999999999999999999999887654 3678999999875 333334446788
Q ss_pred CChhhhhc--ceeEeec----CCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHH
Q 019381 183 LNGADVLE--NVAYARA----YNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQ 256 (342)
Q Consensus 183 ~~~~~~~~--~i~~~~~----~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk 256 (342)
.+.+.... ++.+.+. ....+....+..+.......+++++|||+++.++....+ .. ....+.+.|+
T Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d----~~----~~~~l~~~l~ 147 (230)
T PRK08533 76 YDINKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS----EV----AVNDLMAFFK 147 (230)
T ss_pred CchHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc----hH----HHHHHHHHHH
Confidence 76654332 3333222 112222334444444444467999999999998643111 11 1235667777
Q ss_pred HHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec--C-CeEEEEEEeCCCCCCe---eEEE
Q 019381 257 KLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--G-EERICKVISSPCLAEA---EARF 330 (342)
Q Consensus 257 ~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--~-~~r~~~v~K~r~~~~~---~~~f 330 (342)
.++++ +++++++++... .... ......+++|.++.|+... + ..|.+.|.|.|..+.. .++|
T Consensus 148 ~l~~~-g~tvi~t~~~~~-~~~~-----------~~~~~~~~~DgvI~L~~~~~~~~~~R~i~V~KmR~~~~~~~~~~~f 214 (230)
T PRK08533 148 RISSL-NKVIILTANPKE-LDES-----------VLTILRTAATMLIRLEVKVFGGDLKNSAKIVKYNMAKGSFQKSIPF 214 (230)
T ss_pred HHHhC-CCEEEEEecccc-cccc-----------cceeEEEeeeEEEEEEEeecCCEEEEEEEEEEecCCccccCCEEEE
Confidence 77655 778888776543 1110 1125789999999999654 2 3689999999986543 5899
Q ss_pred EEec-CCCC
Q 019381 331 QISA-QGVA 338 (342)
Q Consensus 331 ~I~~-~Gi~ 338 (342)
+|.+ .||+
T Consensus 215 ~i~~~~g~~ 223 (230)
T PRK08533 215 RVEPKIGLA 223 (230)
T ss_pred EEcCCccEE
Confidence 9998 4875
No 58
>PRK05973 replicative DNA helicase; Provisional
Probab=99.87 E-value=5.3e-21 Score=167.23 Aligned_cols=207 Identities=17% Similarity=0.222 Sum_probs=136.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHHHhhhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHH
Q 019381 61 KELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLC 140 (342)
Q Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~ 140 (342)
..|++.++++..++ ++++. ...+|.+...+...... ....|++.+ |+++|++++|+|+||+|||+|+
T Consensus 15 ~~~~~~~~~~~~~~---~~~~a--~~~g~~~w~~~~~~~~~-------~~p~~~l~G-Gl~~Gsl~LIaG~PG~GKT~la 81 (237)
T PRK05973 15 KLLSRAQNIPLHEA---LDRIA--AEEGFSSWSLLAAKAAA-------TTPAEELFS-QLKPGDLVLLGARPGHGKTLLG 81 (237)
T ss_pred HHHHHhcCCcHHHH---HHHHH--HHhccchHHHHHHhccC-------CCCHHHhcC-CCCCCCEEEEEeCCCCCHHHHH
Confidence 34556667765432 33222 23466655443332211 112688665 9999999999999999999999
Q ss_pred HHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCce
Q 019381 141 HTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFA 220 (342)
Q Consensus 141 ~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 220 (342)
++++.+++. .+.+|+||+.|++ +..+...+..++++.++..+.+.+... +.......+.+ .....+++
T Consensus 82 lqfa~~~a~------~Ge~vlyfSlEes--~~~i~~R~~s~g~d~~~~~~~~~~d~~-d~~~~~~ii~~---l~~~~~~~ 149 (237)
T PRK05973 82 LELAVEAMK------SGRTGVFFTLEYT--EQDVRDRLRALGADRAQFADLFEFDTS-DAICADYIIAR---LASAPRGT 149 (237)
T ss_pred HHHHHHHHh------cCCeEEEEEEeCC--HHHHHHHHHHcCCChHHhccceEeecC-CCCCHHHHHHH---HHHhhCCC
Confidence 999998876 4678999999986 667777788889887765544333222 11122223332 23346789
Q ss_pred EEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccc-ccccc
Q 019381 221 LMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNI-MAHAS 299 (342)
Q Consensus 221 lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~-~~~~~ 299 (342)
+|||||++.+.... +...+..++..|+.+|+++|+|||+++|+++..+.+ .+.+|.+.+. ..+-+
T Consensus 150 lVVIDsLq~l~~~~---------~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~-----~~~~P~laDlR~~~~~ 215 (237)
T PRK05973 150 LVVIDYLQLLDQRR---------EKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPS-----AKPLPDIRDVRLPNPL 215 (237)
T ss_pred EEEEEcHHHHhhcc---------cchhHHHHHHHHHHHHHhCCCeEEEEecCccccccC-----CCCCCChhhcCCCChh
Confidence 99999999874211 111246778889999999999999999999988763 3455655542 34455
Q ss_pred ceEEEEE
Q 019381 300 TTRLALR 306 (342)
Q Consensus 300 d~~l~l~ 306 (342)
|..++..
T Consensus 216 d~~~f~~ 222 (237)
T PRK05973 216 DLSLFDK 222 (237)
T ss_pred hHHHhhh
Confidence 5555443
No 59
>PRK07773 replicative DNA helicase; Validated
Probab=99.87 E-value=2e-21 Score=200.80 Aligned_cols=178 Identities=17% Similarity=0.238 Sum_probs=127.1
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.++ ||+++|++++|+|+||+|||+|++++|.+++.. .+.+|+||+.|++......+.++...
T Consensus 197 ~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~-----~~~~V~~fSlEms~~ql~~R~~s~~~ 270 (886)
T PRK07773 197 ARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAIR-----HRLAVAIFSLEMSKEQLVMRLLSAEA 270 (886)
T ss_pred CCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh-----cCCeEEEEecCCCHHHHHHHHHHHhc
Confidence 568999999999999 599999999999999999999999999998863 35689999999874332222222222
Q ss_pred CCChhhh-------------------h-cceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcch
Q 019381 182 GLNGADV-------------------L-ENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGEL 241 (342)
Q Consensus 182 ~~~~~~~-------------------~-~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~ 241 (342)
+++...+ + +.-.++.......+.++...++.....+++++||||+++.+.... ..
T Consensus 271 ~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~-----~~ 345 (886)
T PRK07773 271 KIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGK-----KY 345 (886)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCC-----CC
Confidence 3221111 0 111233333333455566666666667889999999999874321 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCcccc
Q 019381 242 SARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIM 295 (342)
Q Consensus 242 ~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~ 295 (342)
..|.+.+.++.+.||.+|++++|+||+++|+++..+.+ ..++|.+++.-
T Consensus 346 ~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r-----~~krP~lsDlr 394 (886)
T PRK07773 346 ENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQR-----TDKRPMLSDLR 394 (886)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhcc-----CCCCCCHHHHh
Confidence 45667899999999999999999999999999977652 34456554443
No 60
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-20 Score=166.66 Aligned_cols=210 Identities=20% Similarity=0.286 Sum_probs=153.4
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcC
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYG 182 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~ 182 (342)
.+++||++.||++++||+|+|.+++|+|+||+|||+|++|++.+.+. .+.+|+|++++.+ +..+.+.+.+++
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~------~ge~vlyvs~~e~--~~~l~~~~~~~g 74 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR------EGEPVLYVSTEES--PEELLENARSFG 74 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh------cCCcEEEEEecCC--HHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999998887 4789999999975 777778888899
Q ss_pred CChhhhhcce--eEeecCC------------HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHH
Q 019381 183 LNGADVLENV--AYARAYN------------TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHL 248 (342)
Q Consensus 183 ~~~~~~~~~i--~~~~~~~------------~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l 248 (342)
.+.+...++. .+.+... ......+...+...+...+...+|+|+++.+...... .. ..
T Consensus 75 ~d~~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~----~~----~~ 146 (260)
T COG0467 75 WDLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLND----PA----LV 146 (260)
T ss_pred CCHHHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcCc----hH----HH
Confidence 9887555432 1221110 1223345556666666677999999999965432111 11 12
Q ss_pred HHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---CCeE-EEEEEeCCCCC
Q 019381 249 AKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---GEER-ICKVISSPCLA 324 (342)
Q Consensus 249 ~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---~~~r-~~~v~K~r~~~ 324 (342)
..++..++++.++.+++.+++++....... -+....+.+|.++.|.... ...| .+.|.|.|..+
T Consensus 147 r~~~~~l~~~~~~~~~t~~~~~~~~~~~~~------------~~~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~k~r~~~ 214 (260)
T COG0467 147 RRILLLLKRFLKKLGVTSLLTTEAPVEERG------------ESGVEEYIVDGVIRLDLKEIEGGGDRRYLRILKMRGTP 214 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccCCC------------ccceEEEEEEEEEEEeeecccCceEEEEEEEEeccccc
Confidence 477788888888889999999876432111 0023445889999998743 2345 99999999866
Q ss_pred Ce--eEEEEEec-CCCCCC
Q 019381 325 EA--EARFQISA-QGVADV 340 (342)
Q Consensus 325 ~~--~~~f~I~~-~Gi~~~ 340 (342)
+. ..+|.|++ +||.-+
T Consensus 215 ~~~~~~~~~i~~g~gi~i~ 233 (260)
T COG0467 215 HSLKVIPFEITDGEGIVVY 233 (260)
T ss_pred cCCceeceEEecCCcEEEe
Confidence 54 47999999 788643
No 61
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81 E-value=7.9e-19 Score=147.16 Aligned_cols=205 Identities=21% Similarity=0.296 Sum_probs=152.1
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL 183 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 183 (342)
.+++|.++||+-|+||+|-|+++.|-|+.|+|||.||++++...+. ++.++.|+++|.+ ....+++| +.+++
T Consensus 9 ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~------~g~~v~yvsTe~T-~refi~qm-~sl~y 80 (235)
T COG2874 9 IIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLM------NGYRVTYVSTELT-VREFIKQM-ESLSY 80 (235)
T ss_pred hccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHh------CCceEEEEEechh-HHHHHHHH-HhcCC
Confidence 4889999999999999999999999999999999999999887776 5789999999975 23334333 45555
Q ss_pred Chhh--hhcceeEeec------CCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHH
Q 019381 184 NGAD--VLENVAYARA------YNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSL 255 (342)
Q Consensus 184 ~~~~--~~~~i~~~~~------~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~L 255 (342)
+..+ +..++.++.. ++......+|+.+....+..+-+++||||++.+...+ ....+.+++..+
T Consensus 81 dv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~---------~~~~vl~fm~~~ 151 (235)
T COG2874 81 DVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD---------SEDAVLNFMTFL 151 (235)
T ss_pred CchHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc---------cHHHHHHHHHHH
Confidence 5442 3345555542 3344555667777777767788999999999886532 112467899999
Q ss_pred HHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec--C-CeEEEEEEeCCCCCC--e-eEE
Q 019381 256 QKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--G-EERICKVISSPCLAE--A-EAR 329 (342)
Q Consensus 256 k~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--~-~~r~~~v~K~r~~~~--~-~~~ 329 (342)
|.++.+ |.+||++.|...-.+. .-..+...+|+.+.|+... | ..+.+.+.|-+..+. + .++
T Consensus 152 r~l~d~-gKvIilTvhp~~l~e~------------~~~rirs~~d~~l~L~~~~~Gg~~~~~~~i~K~~ga~~s~~~~I~ 218 (235)
T COG2874 152 RKLSDL-GKVIILTVHPSALDED------------VLTRIRSACDVYLRLRLEELGGDLIKVLEIVKYRGARKSFQNIIS 218 (235)
T ss_pred HHHHhC-CCEEEEEeChhhcCHH------------HHHHHHHhhheeEEEEhhhhCCeeeEEEEEeeecCchhhcCCcee
Confidence 999976 7888888887652221 1234678899999999764 3 467899999997653 2 379
Q ss_pred EEEec-CCCC
Q 019381 330 FQISA-QGVA 338 (342)
Q Consensus 330 f~I~~-~Gi~ 338 (342)
|+|.+ .||.
T Consensus 219 F~V~P~~Glk 228 (235)
T COG2874 219 FRVEPGFGLK 228 (235)
T ss_pred EEecCCCceE
Confidence 99998 6774
No 62
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.79 E-value=2.6e-19 Score=153.83 Aligned_cols=163 Identities=21% Similarity=0.272 Sum_probs=92.8
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC----CCCceEEEecCCCCCHHHHHHHH
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG----GEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~----~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
..++++++.+|+++.|++++|+++.|+|+||+|||+|+.+++...+...++-| .+.+|+||++|++ ...+...+
T Consensus 12 ~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl 89 (193)
T PF13481_consen 12 EDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRL 89 (193)
T ss_dssp -HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHH
T ss_pred hhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHH
Confidence 35788999999999988999999999999999999999999998886433322 4679999999987 33444443
Q ss_pred HHcCCCh--h---hhhc-----ceeEeecCCHH-HHHHHHHHHHHHhHh-cCceEEEEeccccccccccCCCcchHHHHH
Q 019381 179 DRYGLNG--A---DVLE-----NVAYARAYNTD-HQSRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQM 246 (342)
Q Consensus 179 ~~~~~~~--~---~~~~-----~i~~~~~~~~~-~~~~~l~~l~~~~~~-~~~~lvviD~l~~l~~~~~~~~~~~~~r~~ 246 (342)
....... . .+.. .+.+....... .....++.+.+.+.. +++++||||+++.+..... +...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~-------~~~~ 162 (193)
T PF13481_consen 90 RALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDE-------NSNS 162 (193)
T ss_dssp HHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-T-------T-HH
T ss_pred HHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCC-------CCHH
Confidence 3322211 1 1111 11222111111 123445666677766 7899999999999987521 1111
Q ss_pred HHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 247 HLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 247 ~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+.++++.|+++|+++|++|++++|+++
T Consensus 163 ~~~~~~~~l~~la~~~~~~vi~v~H~~K 190 (193)
T PF13481_consen 163 AVAQLMQELKRLAKEYGVAVILVHHTNK 190 (193)
T ss_dssp HHHHHHHHHHHHHHHH--EEEEEEEE--
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 2378999999999999999999999988
No 63
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.76 E-value=5.1e-17 Score=138.75 Aligned_cols=174 Identities=19% Similarity=0.217 Sum_probs=119.8
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhc--ceeEeecCC---
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLE--NVAYARAYN--- 199 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~--~i~~~~~~~--- 199 (342)
+++|.|+||+|||+|+.+++...+. .+.+|+|+++|.+ ...+...+..++.+.+.+.+ .+.+.+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~------~g~~v~~~s~e~~--~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~ 72 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA------RGEPGLYVTLEES--PEELIENAESLGWDLERLEDEGLLAIVDADPDEI 72 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH------CCCcEEEEECCCC--HHHHHHHHHHcCCChHHHHhcCCeEEEecCcccc
Confidence 4789999999999999999988876 5788999999976 66666778888887765432 233332221
Q ss_pred -HHHH---HHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 200 -TDHQ---SRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 200 -~~~~---~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
.... ..++..+...+...+++++|||+++.+++.+ .... ...+.+.++.+.+ .|+++|+++|....
T Consensus 73 s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~------~~~~---~~~i~~l~~~l~~-~g~tvi~v~~~~~~ 142 (187)
T cd01124 73 GPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLME------QSTA---RLEIRRLLFALKR-FGVTTLLTSEQSGL 142 (187)
T ss_pred chhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcC------hHHH---HHHHHHHHHHHHH-CCCEEEEEeccccC
Confidence 1111 1334555556666789999999999986531 0111 1234444444443 49999999998763
Q ss_pred cCCCcccCCCCccccCccccccccceEEEEEeec--C-CeEEEEEEeCCCCCCe
Q 019381 276 VDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--G-EERICKVISSPCLAEA 326 (342)
Q Consensus 276 ~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--~-~~r~~~v~K~r~~~~~ 326 (342)
.+. +.+...+.+.+|.++.|++.. + ..|.++|.|+|..++.
T Consensus 143 ~~~----------~~~~~~~~~~aD~ii~l~~~~~~~~~~r~l~i~K~R~~~~~ 186 (187)
T cd01124 143 EGT----------GFGGGDVEYLVDGVIRLRLDEEGGRLRRSLSVVKMRGGPHD 186 (187)
T ss_pred CCc----------ccCcCceeEeeeEEEEEEEEccCCEEEEEEEEEEccCCCCC
Confidence 221 234567899999999999763 2 3688999999987764
No 64
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.72 E-value=3.1e-16 Score=139.29 Aligned_cols=202 Identities=16% Similarity=0.198 Sum_probs=130.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCC------CCCceEEEecCCCCC--HHHHHHHHHHcCCChhhhhcceeE
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG------GEGKAMYIDAEGTFR--PQRLLQIADRYGLNGADVLENVAY 194 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~------~~~~vl~i~~e~~~~--~~rl~~~~~~~~~~~~~~~~~i~~ 194 (342)
|.+.+|+|+||+|||+|++++|++++...++.| .+++|+|+++|++.. ..|+..+...++.. .+.+++.+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~--~~~~rl~~ 78 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPD--DAGDRLFI 78 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCc--CcccceEE
Confidence 678999999999999999999999887665544 467999999998754 34555555555422 11122221
Q ss_pred e----------ecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCC
Q 019381 195 A----------RAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGV 264 (342)
Q Consensus 195 ~----------~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~ 264 (342)
. .... ......+..+...+...++++||||+++.+.... . .+.. ....++..|+.+++++++
T Consensus 79 ~~g~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~--~-~d~~----~~~~~~~~L~~~a~~~g~ 150 (239)
T cd01125 79 DSGRIQPISIAREGR-IIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVS--E-NDNG----AMDAVIKALRRIAAQTGA 150 (239)
T ss_pred eccCCCceecccCCc-ccccHHHHHHHHHHHhcCCCEEEECChHHhCCCC--c-CCHH----HHHHHHHHHHHHHHHhCC
Confidence 1 1000 0112233333333445789999999988763211 1 1112 245788899999999999
Q ss_pred EEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecC----------C----eEEEEEEeCCCC-CCee-E
Q 019381 265 AVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRG----------E----ERICKVISSPCL-AEAE-A 328 (342)
Q Consensus 265 ~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~----------~----~r~~~v~K~r~~-~~~~-~ 328 (342)
+|++++|.++...... .......|+..|...++..+.|.+... + .....+.|+.++ |... .
T Consensus 151 avl~v~H~~K~~~~~~---~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~~~~~~~~~ 227 (239)
T cd01125 151 AILLVHHVRKGSAKDG---DTQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFGVSKKNNAAATEADR 227 (239)
T ss_pred EEEEEeccCcccccCc---ccccccCcHHHHhcccceEEEEeeCCHHHHHhcCCChhhcceEEEecccccccCCCCCCCe
Confidence 9999999998543210 022345677889999999999987531 1 123467788886 5544 5
Q ss_pred EEEEecCCC
Q 019381 329 RFQISAQGV 337 (342)
Q Consensus 329 ~f~I~~~Gi 337 (342)
.|.-.+.|+
T Consensus 228 w~~~~~~~~ 236 (239)
T cd01125 228 WYRRNSGGV 236 (239)
T ss_pred EEEEccCcc
Confidence 787777665
No 65
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=99.58 E-value=9.6e-15 Score=130.33 Aligned_cols=216 Identities=12% Similarity=0.156 Sum_probs=147.3
Q ss_pred ccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHH-HHHHc-CC
Q 019381 106 TSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQ-IADRY-GL 183 (342)
Q Consensus 106 ~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~-~~~~~-~~ 183 (342)
..-++.|+++|. |.++|++++++||.|+|||||+...++..+. +|.+.+|-|.|.+ ..|+.. |+..+ ++
T Consensus 257 WkRFpvLNk~Lk-GhR~GElTvlTGpTGsGKTTFlsEYsLDL~~------QGVnTLwgSFEi~--n~rla~~mL~Qyagy 327 (514)
T KOG2373|consen 257 WKRFPVLNKYLK-GHRPGELTVLTGPTGSGKTTFLSEYSLDLFT------QGVNTLWGSFEIP--NKRLAHWMLVQYAGY 327 (514)
T ss_pred ehhhhHHHHHhc-cCCCCceEEEecCCCCCceeEehHhhHHHHh------hhhhheeeeeecc--hHHHHHHHHHHHccC
Confidence 467799999998 9999999999999999999999988877665 6788999999965 444433 33322 22
Q ss_pred Chh-------hhhc---ce--eEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHH
Q 019381 184 NGA-------DVLE---NV--AYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKF 251 (342)
Q Consensus 184 ~~~-------~~~~---~i--~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i 251 (342)
..+ ...+ +. ++.....-..+...++.+...+..+++.-||||+++.++....- ..+|......+
T Consensus 328 rl~drl~~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~----~~Drf~~QD~i 403 (514)
T KOG2373|consen 328 RLLDRLNSYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMM----ALDRFHLQDRI 403 (514)
T ss_pred chHhhhhhhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchh----ccchhhhHHHH
Confidence 111 1111 11 11122222334455666656666688999999999999765332 14455556789
Q ss_pred HHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec----CCeEEEEEEeCCCCC-Ce
Q 019381 252 LRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR----GEERICKVISSPCLA-EA 326 (342)
Q Consensus 252 ~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~----~~~r~~~v~K~r~~~-~~ 326 (342)
+..++.+|.+++|.|-++-|..+.-+...+ +-..--|+-...+-+|.++.+.+.+ ...+++.|.|+|+.. .+
T Consensus 404 ig~fR~fAT~nn~HvTlVvHPRKed~d~El---~t~s~fGsAkatQEADNVliiQdkrl~~~rgkkyLqi~KNRy~Gdvg 480 (514)
T KOG2373|consen 404 IGYFRQFATQNNIHVTLVVHPRKEDGDTEL---DTQSFFGSAKATQEADNVLIIQDKRLDRDRGKKYLQILKNRYYGDVG 480 (514)
T ss_pred HHHHHHHhhccceeEEEEecccccCCCcee---eehhhccccccccccccEEEEeecccccccchhhhhhhhhcccCccc
Confidence 999999999999999999999885433211 0001123445678999999998654 146899999999744 45
Q ss_pred eEEEEEecCCC
Q 019381 327 EARFQISAQGV 337 (342)
Q Consensus 327 ~~~f~I~~~Gi 337 (342)
..+.+...+|+
T Consensus 481 ~~pLEf~kn~l 491 (514)
T KOG2373|consen 481 SDPLEFVKNPL 491 (514)
T ss_pred ccceeeccCCc
Confidence 55666666554
No 66
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.56 E-value=5.4e-14 Score=116.72 Aligned_cols=164 Identities=25% Similarity=0.236 Sum_probs=104.6
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHH-H
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDH-Q 203 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 203 (342)
+++|+|+||+|||+++.+++..... .++.++|++.+....... .....+ .......+..+........ .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~e~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 70 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT------KGGKVVYVDIEEEIEELT--ERLIGE--SLKGALDNLIIVFATADDPAA 70 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh------cCCEEEEEECCcchHHHH--HHHhhh--hhccccccEEEEEcCCCCCcH
Confidence 4789999999999999999877655 467899999998654322 111111 1111223344433332221 2
Q ss_pred HHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccC
Q 019381 204 SRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFA 283 (342)
Q Consensus 204 ~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~ 283 (342)
..............+++++|||+++.+......+ .......+.+.+..|...+++.++++|+++|..+.... .
T Consensus 71 ~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~--~-- 143 (165)
T cd01120 71 ARLLSKAERLRERGGDDLIILDELTRLVRALREI---REGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKG--D-- 143 (165)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHH---HhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcccc--C--
Confidence 2222233344556789999999999886532100 00111235577888888888899999999999885443 1
Q ss_pred CCCccccCccccccccceEEEEEe
Q 019381 284 GPQIKPIGGNIMAHASTTRLALRK 307 (342)
Q Consensus 284 ~~~~~p~~g~~~~~~~d~~l~l~~ 307 (342)
...+.++..+.+.+|.++.|.+
T Consensus 144 --~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 144 --PRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred --cccccCccceeeecceEEEEeC
Confidence 1226677889999999999864
No 67
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.51 E-value=7.8e-14 Score=123.63 Aligned_cols=178 Identities=22% Similarity=0.310 Sum_probs=120.5
Q ss_pred cCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC----CCCceEEEecCCCCC--HHHHHHHHHHcCCChhhhhc
Q 019381 117 EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG----GEGKAMYIDAEGTFR--PQRLLQIADRYGLNGADVLE 190 (342)
Q Consensus 117 ~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~----~~~~vl~i~~e~~~~--~~rl~~~~~~~~~~~~~~~~ 190 (342)
.+-+..|-.+.|+|++|.|||++++.++...+....+=| ..++|+|++.|..-+ -.|++.+..++++.|.++.
T Consensus 83 d~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvr- 161 (402)
T COG3598 83 DEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVR- 161 (402)
T ss_pred hHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhh-
Confidence 334567778889999999999999999887776433322 467999999996532 2566778888999888653
Q ss_pred ceeEeecC------CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCC
Q 019381 191 NVAYARAY------NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGV 264 (342)
Q Consensus 191 ~i~~~~~~------~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~ 264 (342)
|+...+.. +.-.. +++.+....+.+..|++||||++..++..+. ... -.+..+.+.++++|.+++|
T Consensus 162 n~dltd~~Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~s-----~s~--vqv~~fi~~~rkla~~l~c 233 (402)
T COG3598 162 NMDLTDVSGAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGKS-----ISD--VQVKEFIKKTRKLARNLEC 233 (402)
T ss_pred heeccccccCCCccccccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCcc-----chh--HHHHHHHHHHHHHHHhcCC
Confidence 44332211 11111 4555556666667899999999998875321 122 2367999999999999999
Q ss_pred EEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec
Q 019381 265 AVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR 309 (342)
Q Consensus 265 ~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~ 309 (342)
+||+++|+.+....+ ...-.|+..|......++++...+
T Consensus 234 aIiy~hHtskss~~~------ksgrsGs~~dg~~l~~~l~l~~tE 272 (402)
T COG3598 234 AIIYIHHTSKSSGKN------KSGRSGSVSDGKFLTTPLMLAYTE 272 (402)
T ss_pred eEEEEeccccccCCC------CCCCCCccCccHHHhhHHHHhccc
Confidence 999999999854332 122234445666656666665444
No 68
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.50 E-value=8.7e-14 Score=117.38 Aligned_cols=144 Identities=24% Similarity=0.379 Sum_probs=96.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHH-------HHHcC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI-------ADRYG 182 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~-------~~~~~ 182 (342)
..|+.+-. -+.+|+++.|+||||||||||+. |.+.+.+++.| .++|+++.......+..+ +++|+
T Consensus 16 ~VLkgi~l-~v~~Gevv~iiGpSGSGKSTlLR--clN~LE~~~~G-----~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 16 EVLKGISL-SVEKGEVVVIIGPSGSGKSTLLR--CLNGLEEPDSG-----SITVDGEDVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred EEecCcce-eEcCCCEEEEECCCCCCHHHHHH--HHHCCcCCCCc-----eEEECCEeccchhhHHHHHHhcCeeccccc
Confidence 44555555 78999999999999999999999 56788876655 889988643322233333 34455
Q ss_pred CChh-hhhcceeEee----cCCHHH----HHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 183 LNGA-DVLENVAYAR----AYNTDH----QSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 183 ~~~~-~~~~~i~~~~----~~~~~~----~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
+-|. ++++|+.... ..+..+ ..++|+++ .+.....+|+++.+|++++.+
T Consensus 88 LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSAL 167 (240)
T COG1126 88 LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167 (240)
T ss_pred ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccC
Confidence 5444 5666654321 112111 11222221 122233789999999999998
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++. +.+++..++.+|++ |.|.|+++|-..
T Consensus 168 DPEl------------v~EVL~vm~~LA~e-GmTMivVTHEM~ 197 (240)
T COG1126 168 DPEL------------VGEVLDVMKDLAEE-GMTMIIVTHEMG 197 (240)
T ss_pred CHHH------------HHHHHHHHHHHHHc-CCeEEEEechhH
Confidence 8653 56899999999988 899999998754
No 69
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=99.47 E-value=1.3e-12 Score=109.69 Aligned_cols=154 Identities=23% Similarity=0.363 Sum_probs=122.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH----cCC--------Ch--
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR----YGL--------NG-- 185 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~----~~~--------~~-- 185 (342)
...|.+++|.||.++|||..+.|+++.+.+|..+||.+..|+|||++..|+..|+.++++. .++ +.
T Consensus 35 ~daG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~ 114 (293)
T KOG2859|consen 35 ADAGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEE 114 (293)
T ss_pred cccCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHh
Confidence 3478999999999999999999999999999999999999999999999999988877653 111 00
Q ss_pred --h----hhhcceeEeecCCHHHHHHHHHHHHHHhHhcC-ceEEEEeccccccccccCCCcc-hHHHHHHHHHHHHHHHH
Q 019381 186 --A----DVLENVAYARAYNTDHQSRLLLEAASMMVETR-FALMIVDSATALYRTDFSGRGE-LSARQMHLAKFLRSLQK 257 (342)
Q Consensus 186 --~----~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~-~~lvviD~l~~l~~~~~~~~~~-~~~r~~~l~~i~~~Lk~ 257 (342)
+ +.+.++.++++++..++...+..++..+..++ ..++++|+++++++.+-...++ .......++.+.+.|++
T Consensus 115 ~~eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr~~~q~LeK 194 (293)
T KOG2859|consen 115 QLEEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLRLLQQRLEK 194 (293)
T ss_pred HHHHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccchHhhhhhHHHHHHHHHHHHHH
Confidence 1 35678889999999988888888887776655 8999999999998865432211 12234567788899999
Q ss_pred HHHHhCCEEEEEeccc
Q 019381 258 LADEFGVAVVITNQVV 273 (342)
Q Consensus 258 la~~~~~~vi~~~h~~ 273 (342)
+++.+...++.+.++-
T Consensus 195 L~~d~~lv~~aT~~ti 210 (293)
T KOG2859|consen 195 LCKDAILVGMATVETI 210 (293)
T ss_pred HHhhheeeeeeehhHH
Confidence 9999888888887654
No 70
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.40 E-value=5.8e-13 Score=115.02 Aligned_cols=160 Identities=20% Similarity=0.254 Sum_probs=96.8
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHH-HHHH-------
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRL-LQIA------- 178 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl-~~~~------- 178 (342)
...|+.+-. -+++|+++.|.||||||||||+..+ .+...++.| .++|+... .++...+ ..+.
T Consensus 18 ~~~L~~v~l-~i~~Ge~vaI~GpSGSGKSTLLnii--g~ld~pt~G-----~v~i~g~d~~~l~~~~~~~~R~~~iGfvF 89 (226)
T COG1136 18 VEALKDVNL-EIEAGEFVAIVGPSGSGKSTLLNLL--GGLDKPTSG-----EVLINGKDLTKLSEKELAKLRRKKIGFVF 89 (226)
T ss_pred eEecccceE-EEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCc-----eEEECCEEcCcCCHHHHHHHHHHhEEEEC
Confidence 456666666 7999999999999999999999954 355544443 55665521 1222222 2222
Q ss_pred HHcCCChh-hhhcceeE----eecCC---HHHHHHHHHHH-----------------------HHHhHhcCceEEEEecc
Q 019381 179 DRYGLNGA-DVLENVAY----ARAYN---TDHQSRLLLEA-----------------------ASMMVETRFALMIVDSA 227 (342)
Q Consensus 179 ~~~~~~~~-~~~~~i~~----~~~~~---~~~~~~~l~~l-----------------------~~~~~~~~~~lvviD~l 227 (342)
+.+++-+. ++.+|+.+ ..... ......+++.+ .+.....+|++|+.|++
T Consensus 90 Q~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEP 169 (226)
T COG1136 90 QNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP 169 (226)
T ss_pred ccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCc
Confidence 23333222 44455442 11111 00111111110 11222378999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEe
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK 307 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~ 307 (342)
+..++.+. -.+++..|+.++++.|.|||+++|-.. ++..+|.++.+..
T Consensus 170 TgnLD~~t------------~~~V~~ll~~~~~~~g~tii~VTHd~~--------------------lA~~~dr~i~l~d 217 (226)
T COG1136 170 TGNLDSKT------------AKEVLELLRELNKERGKTIIMVTHDPE--------------------LAKYADRVIELKD 217 (226)
T ss_pred cccCChHH------------HHHHHHHHHHHHHhcCCEEEEEcCCHH--------------------HHHhCCEEEEEeC
Confidence 99876421 238899999999999999999999765 3346677777765
Q ss_pred e
Q 019381 308 G 308 (342)
Q Consensus 308 ~ 308 (342)
.
T Consensus 218 G 218 (226)
T COG1136 218 G 218 (226)
T ss_pred C
Confidence 3
No 71
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.36 E-value=9.4e-12 Score=107.10 Aligned_cols=154 Identities=21% Similarity=0.291 Sum_probs=96.4
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHH--------------
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLL-------------- 175 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~-------------- 175 (342)
..|+.+.. -+.+|+.+.|.|+||||||||+..++ ....++.| .+++++.......+.+
T Consensus 21 ~~l~~VS~-~i~~Ge~lgivGeSGsGKSTL~r~l~--Gl~~p~~G-----~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~ 92 (252)
T COG1124 21 HALNNVSL-EIERGETLGIVGESGSGKSTLARLLA--GLEKPSSG-----SILLDGKPLAPKKRAKAFYRPVQMVFQDPY 92 (252)
T ss_pred hhhcceeE-EecCCCEEEEEcCCCCCHHHHHHHHh--cccCCCCc-----eEEECCcccCccccchhhccceeEEecCCc
Confidence 45666666 79999999999999999999999654 66665555 5666654221111111
Q ss_pred ------------------------------HHHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEe
Q 019381 176 ------------------------------QIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVD 225 (342)
Q Consensus 176 ------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD 225 (342)
++++.++++++. +++ +....+.-+ .+.+..+++ ...+|+++|+|
T Consensus 93 ~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~-l~R--~P~eLSGGQ-~QRiaIARA--L~~~PklLIlD 166 (252)
T COG1124 93 SSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF-LDR--RPHELSGGQ-RQRIAIARA--LIPEPKLLILD 166 (252)
T ss_pred cccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH-Hhc--CchhcChhH-HHHHHHHHH--hccCCCEEEec
Confidence 111112222110 000 111111111 111222222 23679999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEE
Q 019381 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLAL 305 (342)
Q Consensus 226 ~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l 305 (342)
++++.++... ..++++.|..+.++++.|.|+++|-.. .+.|+||.+..+
T Consensus 167 EptSaLD~si------------Qa~IlnlL~~l~~~~~lt~l~IsHdl~-------------------~v~~~cdRi~Vm 215 (252)
T COG1124 167 EPTSALDVSV------------QAQILNLLLELKKERGLTYLFISHDLA-------------------LVEHMCDRIAVM 215 (252)
T ss_pred CchhhhcHHH------------HHHHHHHHHHHHHhcCceEEEEeCcHH-------------------HHHHHhhheeee
Confidence 9999876421 358999999999999999999999765 356788888888
Q ss_pred Eee
Q 019381 306 RKG 308 (342)
Q Consensus 306 ~~~ 308 (342)
..+
T Consensus 216 ~~G 218 (252)
T COG1124 216 DNG 218 (252)
T ss_pred eCC
Confidence 764
No 72
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.33 E-value=6.1e-12 Score=110.88 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=94.6
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhh
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGAD 187 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~ 187 (342)
+-+.|+.+.. -+++|+++.|.||+|||||||+..++ ..+++.. +.+++++.. .....-+++++.+++-|+.
T Consensus 14 ~~~il~~ls~-~i~~G~i~~iiGpNG~GKSTLLk~l~--g~l~p~~-----G~V~l~g~~-i~~~~~kelAk~ia~vpQ~ 84 (258)
T COG1120 14 GKPILDDLSF-SIPKGEITGILGPNGSGKSTLLKCLA--GLLKPKS-----GEVLLDGKD-IASLSPKELAKKLAYVPQS 84 (258)
T ss_pred CeeEEecceE-EecCCcEEEEECCCCCCHHHHHHHHh--ccCCCCC-----CEEEECCCc-hhhcCHHHHhhhEEEeccC
Confidence 4456677777 89999999999999999999999654 5555443 488888874 2333345677776553331
Q ss_pred h--hcceeE--------------eecCCHH---HHHHHHHHH----------------------HHHhHhcCceEEEEec
Q 019381 188 V--LENVAY--------------ARAYNTD---HQSRLLLEA----------------------ASMMVETRFALMIVDS 226 (342)
Q Consensus 188 ~--~~~i~~--------------~~~~~~~---~~~~~l~~l----------------------~~~~~~~~~~lvviD~ 226 (342)
. ...+.+ +...+.+ ...+.++.+ .+.....+++++++|+
T Consensus 85 ~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE 164 (258)
T COG1120 85 PSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE 164 (258)
T ss_pred CCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC
Confidence 0 011111 1111111 122222221 2233347899999999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 227 ATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 227 l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++.++-. . ..++++.+++++++.|.|||++.|--.
T Consensus 165 PTs~LDi~--------~----Q~evl~ll~~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 165 PTSHLDIA--------H----QIEVLELLRDLNREKGLTVVMVLHDLN 200 (258)
T ss_pred CccccCHH--------H----HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 99987632 1 348999999999999999999988643
No 73
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.2e-11 Score=109.85 Aligned_cols=147 Identities=20% Similarity=0.322 Sum_probs=101.3
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCCC-
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGLN- 184 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~- 184 (342)
.+..||++.. -+++|+++.|.|.||+|||||.. +.+.+..|+.| -+++++++ .++...+++..++.|+-
T Consensus 18 ~~~al~~vsL-~I~~GeI~GIIG~SGAGKSTLiR--~iN~Le~PtsG-----~v~v~G~di~~l~~~~Lr~~R~~IGMIF 89 (339)
T COG1135 18 TVTALDDVSL-EIPKGEIFGIIGYSGAGKSTLLR--LINLLERPTSG-----SVFVDGQDLTALSEAELRQLRQKIGMIF 89 (339)
T ss_pred ceeeeccceE-EEcCCcEEEEEcCCCCcHHHHHH--HHhccCCCCCc-----eEEEcCEecccCChHHHHHHHhhccEEe
Confidence 4678888888 89999999999999999999999 56788777655 56666642 24455555555544432
Q ss_pred ------h-hhhhcceeEeec---CCHHH----HHHHHHHH----------------------HHHhHhcCceEEEEeccc
Q 019381 185 ------G-ADVLENVAYARA---YNTDH----QSRLLLEA----------------------ASMMVETRFALMIVDSAT 228 (342)
Q Consensus 185 ------~-~~~~~~i~~~~~---~~~~~----~~~~l~~l----------------------~~~~~~~~~~lvviD~l~ 228 (342)
. .++++|+.+.-. .+..+ ..++++.+ .+.....+|++++.|+.+
T Consensus 90 QhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaT 169 (339)
T COG1135 90 QHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEAT 169 (339)
T ss_pred ccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCcc
Confidence 1 245566655322 11122 12222211 222334789999999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.++++. ...++..|+.+.+++|+||++++|-..
T Consensus 170 SALDP~T------------T~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 170 SALDPET------------TQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred ccCChHH------------HHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 9987642 348999999999999999999999654
No 74
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.31 E-value=2.4e-11 Score=98.64 Aligned_cols=150 Identities=19% Similarity=0.272 Sum_probs=96.5
Q ss_pred ccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHH----HHHH
Q 019381 106 TSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLL----QIAD 179 (342)
Q Consensus 106 ~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~----~~~~ 179 (342)
.++-+-||.+.. -+.+|+.+.|+||||||||||..++| .+.+++.| ++||.+|. ...++..+ ..++
T Consensus 13 a~~a~il~~isl-~v~~Ge~iaitGPSG~GKStllk~va--~Lisp~~G-----~l~f~Ge~vs~~~pea~Rq~VsY~~Q 84 (223)
T COG4619 13 AGDAKILNNISL-SVRAGEFIAITGPSGCGKSTLLKIVA--SLISPTSG-----TLLFEGEDVSTLKPEAYRQQVSYCAQ 84 (223)
T ss_pred cCCCeeecceee-eecCCceEEEeCCCCccHHHHHHHHH--hccCCCCc-----eEEEcCccccccChHHHHHHHHHHHc
Confidence 456667888877 89999999999999999999999766 55666555 88888873 23333333 3334
Q ss_pred HcCCChhhhhcceeEee-----cCCHHHHHHHHHHH---------------------HHHhH--hcCceEEEEecccccc
Q 019381 180 RYGLNGADVLENVAYAR-----AYNTDHQSRLLLEA---------------------ASMMV--ETRFALMIVDSATALY 231 (342)
Q Consensus 180 ~~~~~~~~~~~~i~~~~-----~~~~~~~~~~l~~l---------------------~~~~~--~~~~~lvviD~l~~l~ 231 (342)
.-.+-++.+.+|+.+.. .++......++.++ .+++. .+.|+++.+|++++.+
T Consensus 85 ~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 85 TPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred CccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 33444555666655431 22222233333221 12222 2679999999999987
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
+.. ..| .+=..+.++..+.+++|+-++|-...
T Consensus 165 D~~-------nkr-----~ie~mi~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 165 DES-------NKR-----NIEEMIHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred Chh-------hHH-----HHHHHHHHHhhhhceEEEEEecChHH
Confidence 642 221 34445566666789999999998763
No 75
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.29 E-value=2.9e-11 Score=103.83 Aligned_cols=144 Identities=25% Similarity=0.325 Sum_probs=94.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCCCh---
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGLNG--- 185 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~--- 185 (342)
.+|.+-. -+++|+++.|.|+||+|||||+..++ .+++++.| .+++++++- ++..+..++.+++|+--
T Consensus 23 Ild~v~l-~V~~Gei~~iiGgSGsGKStlLr~I~--Gll~P~~G-----eI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 23 ILDGVDL-DVPRGEILAILGGSGSGKSTLLRLIL--GLLRPDKG-----EILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred EecCcee-eecCCcEEEEECCCCcCHHHHHHHHh--ccCCCCCC-----eEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence 4666666 79999999999999999999999765 66766554 777777642 34555556666665421
Q ss_pred -----hhhhcceeEeec----CCHHHHHHH-HHHH--------------------------HHHhHhcCceEEEEecccc
Q 019381 186 -----ADVLENVAYARA----YNTDHQSRL-LLEA--------------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 186 -----~~~~~~i~~~~~----~~~~~~~~~-l~~l--------------------------~~~~~~~~~~lvviD~l~~ 229 (342)
-++++|+.+.-. .+...+.++ +.++ .+.....+|.++++|++++
T Consensus 95 ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPts 174 (263)
T COG1127 95 ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTS 174 (263)
T ss_pred ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 145667655311 111111111 0000 1222236899999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
-+++- . .+.+...++++.+.+++|+++++|-..
T Consensus 175 GLDPI-------~-----a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 175 GLDPI-------S-----AGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred CCCcc-------h-----HHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 77652 1 236667778888889999999999765
No 76
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.27 E-value=5.2e-11 Score=102.95 Aligned_cols=147 Identities=18% Similarity=0.302 Sum_probs=96.4
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC--CHHHHH----HHHHHc
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF--RPQRLL----QIADRY 181 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~--~~~rl~----~~~~~~ 181 (342)
+...+|++.. -++.|+++.+.|||||||||++.. .+.+..++.| .++|+.+.-. +...++ ...+..
T Consensus 13 ~~~av~~v~l-~I~~gef~vliGpSGsGKTTtLkM--INrLiept~G-----~I~i~g~~i~~~d~~~LRr~IGYviQqi 84 (309)
T COG1125 13 NKKAVDDVNL-TIEEGEFLVLIGPSGSGKTTTLKM--INRLIEPTSG-----EILIDGEDISDLDPVELRRKIGYVIQQI 84 (309)
T ss_pred CceeeeeeeE-EecCCeEEEEECCCCCcHHHHHHH--HhcccCCCCc-----eEEECCeecccCCHHHHHHhhhhhhhhc
Confidence 4556777777 899999999999999999999995 5667776655 8888887532 232222 234455
Q ss_pred CCChh-hhhcceeEeec---CCHHHHHHHHHHH----------------------------HHHhHhcCceEEEEecccc
Q 019381 182 GLNGA-DVLENVAYARA---YNTDHQSRLLLEA----------------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 182 ~~~~~-~~~~~i~~~~~---~~~~~~~~~l~~l----------------------------~~~~~~~~~~lvviD~l~~ 229 (342)
++-|. ++.+|+.++.. ++..+..+..+++ .......+|.++.+|++..
T Consensus 85 gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFg 164 (309)
T COG1125 85 GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFG 164 (309)
T ss_pred ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCcc
Confidence 55444 45566654432 2222222211111 1111236799999999988
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++ -.|. ++-..++++.++++.|||+++|-..
T Consensus 165 ALDp--------I~R~----~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 165 ALDP--------ITRK----QLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred ccCh--------hhHH----HHHHHHHHHHHHhCCEEEEEecCHH
Confidence 7664 3332 5556788889999999999999766
No 77
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.26 E-value=7.4e-11 Score=103.66 Aligned_cols=140 Identities=16% Similarity=0.294 Sum_probs=98.8
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC------CCHHHHHHHHHHcC
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT------FRPQRLLQIADRYG 182 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~------~~~~rl~~~~~~~~ 182 (342)
+..+|.+.. .+.+|+++.|.|+|||||||++..++ .+.++..| .+||++..- -...++.++++..+
T Consensus 26 v~avd~Vsf-~i~~ge~~glVGESG~GKSTlgr~i~--~L~~pt~G-----~i~f~g~~i~~~~~~~~~~~v~elL~~Vg 97 (268)
T COG4608 26 VKAVDGVSF-SIKEGETLGLVGESGCGKSTLGRLIL--GLEEPTSG-----EILFEGKDITKLSKEERRERVLELLEKVG 97 (268)
T ss_pred eEEecceeE-EEcCCCEEEEEecCCCCHHHHHHHHH--cCcCCCCc-----eEEEcCcchhhcchhHHHHHHHHHHHHhC
Confidence 467788877 89999999999999999999999654 55555544 777776531 12345677788888
Q ss_pred CChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 019381 183 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF 262 (342)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~ 262 (342)
+..+.+. + +.+..+.-+. +.+..+++ ...+|+++|.|++.+.++.. - -.++++.|+.+.+++
T Consensus 98 l~~~~~~-r--yPhelSGGQr-QRi~IARA--Lal~P~liV~DEpvSaLDvS--------i----qaqIlnLL~dlq~~~ 159 (268)
T COG4608 98 LPEEFLY-R--YPHELSGGQR-QRIGIARA--LALNPKLIVADEPVSALDVS--------V----QAQILNLLKDLQEEL 159 (268)
T ss_pred CCHHHhh-c--CCcccCchhh-hhHHHHHH--HhhCCcEEEecCchhhcchh--------H----HHHHHHHHHHHHHHh
Confidence 6655322 2 3333443332 22333233 34789999999999987642 1 248999999999999
Q ss_pred CCEEEEEecccc
Q 019381 263 GVAVVITNQVVA 274 (342)
Q Consensus 263 ~~~vi~~~h~~~ 274 (342)
+++.++++|--.
T Consensus 160 ~lt~lFIsHDL~ 171 (268)
T COG4608 160 GLTYLFISHDLS 171 (268)
T ss_pred CCeEEEEEEEHH
Confidence 999999999765
No 78
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.24 E-value=7.6e-11 Score=107.58 Aligned_cols=146 Identities=24% Similarity=0.307 Sum_probs=85.4
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCC------------------
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFR------------------ 170 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~------------------ 170 (342)
...|+.+.. -+++|++++|.||+|+|||||...++ ....+..| .+.+.++....
T Consensus 18 ~~~l~~vs~-~i~~Gei~gllG~NGAGKTTllk~l~--gl~~p~~G-----~i~i~G~~~~~~~~~~~~~igy~~~~~~~ 89 (293)
T COG1131 18 KTALDGVSF-EVEPGEIFGLLGPNGAGKTTLLKILA--GLLKPTSG-----EILVLGYDVVKEPAKVRRRIGYVPQEPSL 89 (293)
T ss_pred CEEEeceeE-EEcCCeEEEEECCCCCCHHHHHHHHh--CCcCCCce-----EEEEcCEeCccCHHHHHhheEEEccCCCC
Confidence 567788777 89999999999999999999999654 55555444 33343332111
Q ss_pred -----H-HHHHHHHHHcCCCh-------hhhhcceeEeecCC--HH----HHHHHHHHHHHHhHhcCceEEEEecccccc
Q 019381 171 -----P-QRLLQIADRYGLNG-------ADVLENVAYARAYN--TD----HQSRLLLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 171 -----~-~rl~~~~~~~~~~~-------~~~~~~i~~~~~~~--~~----~~~~~l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
. +.+...+.-++... +++++.+.+....+ .. ...+.+..+.+ ..++|+++|+|++++-+
T Consensus 90 ~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~a--L~~~P~lliLDEPt~GL 167 (293)
T COG1131 90 YPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALA--LLHDPELLILDEPTSGL 167 (293)
T ss_pred CccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHH--HhcCCCEEEECCCCcCC
Confidence 1 11111112222110 01222211111000 00 01111111122 23789999999999977
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
++ ..+ .++.+.|+.++++.+.+|++++|.....
T Consensus 168 Dp--------~~~----~~~~~~l~~l~~~g~~tvlissH~l~e~ 200 (293)
T COG1131 168 DP--------ESR----REIWELLRELAKEGGVTILLSTHILEEA 200 (293)
T ss_pred CH--------HHH----HHHHHHHHHHHhCCCcEEEEeCCcHHHH
Confidence 64 222 3888999999999779999999998743
No 79
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.23 E-value=1.9e-11 Score=112.48 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=96.9
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CC--HHHHHHHHHHcCC
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FR--PQRLLQIADRYGL 183 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~--~~rl~~~~~~~~~ 183 (342)
+...+|++-. -+++|+++.|.|||||||||++..|| +...++.| .++++++.- .+ ...+-.+++.+.+
T Consensus 17 ~~~av~~isl-~i~~Gef~~lLGPSGcGKTTlLR~IA--Gfe~p~~G-----~I~l~G~~i~~lpp~kR~ig~VFQ~YAL 88 (352)
T COG3842 17 DFTAVDDISL-DIKKGEFVTLLGPSGCGKTTLLRMIA--GFEQPSSG-----EILLDGEDITDVPPEKRPIGMVFQSYAL 88 (352)
T ss_pred CeeEEeccee-eecCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----eEEECCEECCCCChhhcccceeecCccc
Confidence 4677888877 89999999999999999999999765 55555444 777876621 22 2334455666666
Q ss_pred Chh-hhhcceeEeec----CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccc
Q 019381 184 NGA-DVLENVAYARA----YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 184 ~~~-~~~~~i~~~~~----~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~ 232 (342)
-|. ++.+|+.|--. .... ...+.++.+ .+......|+++.+|++-+.++
T Consensus 89 FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD 168 (352)
T COG3842 89 FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168 (352)
T ss_pred CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchh
Confidence 554 55666554322 1111 122222211 1222337899999999987665
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
. .-| .++-..|+++.++.|+|+|+++|--.
T Consensus 169 ~--------kLR----~~mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 169 A--------KLR----EQMRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred H--------HHH----HHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 3 222 25667899999999999999999654
No 80
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=7.1e-11 Score=103.73 Aligned_cols=147 Identities=23% Similarity=0.318 Sum_probs=90.3
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC---C
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL---N 184 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~---~ 184 (342)
+.+.|+.+.. .+++|+.+.|.|++|||||||+..+ +++.++..| .++++...........++.+..++ +
T Consensus 16 ~~~~l~~v~~-~i~~Ge~~~i~G~nGsGKSTL~~~l--~GLl~p~~G-----~v~~~g~~~~~~~~~~~~~~~vG~VfQn 87 (235)
T COG1122 16 RKAALKDVSL-EIEKGERVLLIGPNGSGKSTLLKLL--NGLLKPTSG-----EVLVDGLDTSSEKSLLELRQKVGLVFQN 87 (235)
T ss_pred CceeeeeeEE-EECCCCEEEEECCCCCCHHHHHHHH--cCcCcCCCC-----EEEECCeeccchhhHHHhhcceEEEEEC
Confidence 3456666666 8999999999999999999999964 477766554 557766542212233344443332 2
Q ss_pred hhh------hhcceeEee---cCCHHHHHHHHHHH--------------------------HHHhHhcCceEEEEecccc
Q 019381 185 GAD------VLENVAYAR---AYNTDHQSRLLLEA--------------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 185 ~~~------~~~~i~~~~---~~~~~~~~~~l~~l--------------------------~~~~~~~~~~lvviD~l~~ 229 (342)
|+. +.+.+.|.. ..+.++.......+ .+.+...+|+++|+|++++
T Consensus 88 pd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta 167 (235)
T COG1122 88 PDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167 (235)
T ss_pred cccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCC
Confidence 221 111111110 01111111111111 2233347899999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++. . ..++++.++++.++.+.|+|+++|-..
T Consensus 168 ~LD~~--------~----~~~l~~~l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 168 GLDPK--------G----RRELLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred CCCHH--------H----HHHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 87642 2 248889999999998999999999876
No 81
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=2.7e-11 Score=106.31 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=90.4
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC------------CCceEEEec----CCCCCHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG------------EGKAMYIDA----EGTFRPQR 173 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~------------~~~vl~i~~----e~~~~~~r 173 (342)
+.|+.+.. -+++|+++.|.||+|+|||||+..++ ..+++..|.- ...+-|+-- +..|+. .
T Consensus 18 ~vl~~i~l-~v~~G~~~~iiGPNGaGKSTLlK~iL--Gll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~-t 93 (254)
T COG1121 18 PVLEDISL-SVEKGEITALIGPNGAGKSTLLKAIL--GLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPI-T 93 (254)
T ss_pred eeeeccEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCc-C
Confidence 46777776 89999999999999999999999653 6555554410 012334321 111111 1
Q ss_pred HHHHHHHcCCChhhhhcceeEeecC---CHHHHHHHHHHH----------------------HHHhHhcCceEEEEeccc
Q 019381 174 LLQIADRYGLNGADVLENVAYARAY---NTDHQSRLLLEA----------------------ASMMVETRFALMIVDSAT 228 (342)
Q Consensus 174 l~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~ 228 (342)
+.++...-.+ .+..+++.. +.....+.|+++ .+.....+|+++++|+++
T Consensus 94 V~d~V~~g~~------~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~ 167 (254)
T COG1121 94 VKDVVLLGRY------GKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF 167 (254)
T ss_pred HHHHHHccCc------ccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence 1111110000 000011111 112222222211 223334789999999998
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEee
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKG 308 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~ 308 (342)
.-.+. .. ...+.+.|+++.++ |+||++++|--.. ....+|.++.|.+.
T Consensus 168 ~gvD~--------~~----~~~i~~lL~~l~~e-g~tIl~vtHDL~~-------------------v~~~~D~vi~Ln~~ 215 (254)
T COG1121 168 TGVDV--------AG----QKEIYDLLKELRQE-GKTVLMVTHDLGL-------------------VMAYFDRVICLNRH 215 (254)
T ss_pred ccCCH--------HH----HHHHHHHHHHHHHC-CCEEEEEeCCcHH-------------------hHhhCCEEEEEcCe
Confidence 87653 21 23788899999999 9999999996542 33466777777764
No 82
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=9e-11 Score=100.52 Aligned_cols=154 Identities=18% Similarity=0.291 Sum_probs=101.8
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIA 178 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~ 178 (342)
....++.|-..|+.+-. -|++|+++.|.|++|+|||||+..+. .+..+..| .++++.+.. .....++.+.
T Consensus 9 l~k~yp~~~~aL~~Vnl-~I~~GE~VaiIG~SGaGKSTLLR~ln--gl~d~t~G-----~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 9 LSKTYPGGHQALKDVNL-EINQGEMVAIIGPSGAGKSTLLRSLN--GLVDPTSG-----EILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eeeecCCCceeeeeEeE-EeCCCcEEEEECCCCCcHHHHHHHHh--cccCCCcc-----eEEecccchhccchHHHHHHH
Confidence 34456778888998888 89999999999999999999999654 56665544 677776532 3344455555
Q ss_pred HHcC-------CChh-hhhcceeEee------------cCCHHHHH---HHHHHH----------------------HHH
Q 019381 179 DRYG-------LNGA-DVLENVAYAR------------AYNTDHQS---RLLLEA----------------------ASM 213 (342)
Q Consensus 179 ~~~~-------~~~~-~~~~~i~~~~------------~~~~~~~~---~~l~~l----------------------~~~ 213 (342)
...| +.+. .+++|+...+ .++.++.. +.|+++ .+.
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 4443 3222 4444443221 12222222 222222 122
Q ss_pred hHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 214 MVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 214 ~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
....++++|.-|++.+-+++.. -..++..|++++++.|+|||+.-|...
T Consensus 161 aL~Q~pkiILADEPvasLDp~~------------a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPES------------AKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHhcCCCEEecCCcccccChhh------------HHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 2236799999999998776532 238999999999999999999998765
No 83
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=1.1e-10 Score=101.38 Aligned_cols=146 Identities=21% Similarity=0.233 Sum_probs=84.0
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC-CHHHHHHHHHHcCC-Chh
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF-RPQRLLQIADRYGL-NGA 186 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~-~~~rl~~~~~~~~~-~~~ 186 (342)
...|+.+-. -+.+|+++.|.||||||||||+.-+| ++..+..| .+.+++.... +...+..+++...+ +.-
T Consensus 16 ~~vl~~i~L-~v~~GEfvsilGpSGcGKSTLLriiA--GL~~p~~G-----~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~ 87 (248)
T COG1116 16 VEVLEDINL-SVEKGEFVAILGPSGCGKSTLLRLIA--GLEKPTSG-----EVLLDGRPVTGPGPDIGYVFQEDALLPWL 87 (248)
T ss_pred eEEecccee-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----eEEECCcccCCCCCCEEEEeccCcccchh
Confidence 556666666 79999999999999999999999654 66665554 3444433110 00011112222221 122
Q ss_pred hhhcceeEeecCC---H----HHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCC
Q 019381 187 DVLENVAYARAYN---T----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSG 237 (342)
Q Consensus 187 ~~~~~i~~~~~~~---~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~ 237 (342)
++.+|+.+.-... . ....+.++.+ .+.....+|+++++|++.+.++.
T Consensus 88 Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDa---- 163 (248)
T COG1116 88 TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA---- 163 (248)
T ss_pred hHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhH----
Confidence 3334433321110 0 0111111111 11222378999999999887653
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 238 RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 238 ~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..|. .+-..|.++.++.+.||+++||-..
T Consensus 164 ----lTR~----~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 164 ----LTRE----ELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred ----HHHH----HHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 2232 5556788888999999999999876
No 84
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.15 E-value=2.3e-10 Score=107.53 Aligned_cols=149 Identities=19% Similarity=0.297 Sum_probs=93.5
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC-C-CHHH-HH----
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT-F-RPQR-LL---- 175 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~-~-~~~r-l~---- 175 (342)
..++ |+-.+|.+.. .+++|++..|.|++|+|||||... +.....|+.| .+|+++..- + ++.. ++
T Consensus 12 K~f~-~~~And~V~l-~v~~GeIHaLLGENGAGKSTLm~i--L~G~~~P~~G-----eI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 12 KRFP-GVVANDDVSL-SVKKGEIHALLGENGAGKSTLMKI--LFGLYQPDSG-----EIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred EEcC-CEEecCceee-eecCCcEEEEeccCCCCHHHHHHH--HhCcccCCcc-----eEEECCEEeccCCHHHHHHcCCc
Confidence 4455 8888899888 899999999999999999999995 4566666655 777776521 1 1111 00
Q ss_pred HHHHHcCCCh-hhhhcceeEeecC------CHHHHHHH----------------------------HHHHHHHhHhcCce
Q 019381 176 QIADRYGLNG-ADVLENVAYARAY------NTDHQSRL----------------------------LLEAASMMVETRFA 220 (342)
Q Consensus 176 ~~~~~~~~~~-~~~~~~i~~~~~~------~~~~~~~~----------------------------l~~l~~~~~~~~~~ 220 (342)
...++|.+-+ -++++|+.+.... +.....+. ++.+..+ -.+++
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL--yr~a~ 160 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL--YRGAR 160 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH--hcCCC
Confidence 0012222211 1344444433221 11111111 1111122 26799
Q ss_pred EEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 221 LMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 221 lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
++|+|++|+.+.+. ++.+++..|++++++ |.+||+++|--+.
T Consensus 161 iLILDEPTaVLTP~------------E~~~lf~~l~~l~~~-G~tIi~ITHKL~E 202 (501)
T COG3845 161 LLILDEPTAVLTPQ------------EADELFEILRRLAAE-GKTIIFITHKLKE 202 (501)
T ss_pred EEEEcCCcccCCHH------------HHHHHHHHHHHHHHC-CCEEEEEeccHHH
Confidence 99999999998641 356899999998876 9999999997653
No 85
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.12 E-value=1.3e-10 Score=96.31 Aligned_cols=152 Identities=16% Similarity=0.250 Sum_probs=90.1
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC-C-CCHHHHHHHHH
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG-T-FRPQRLLQIAD 179 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~-~-~~~~rl~~~~~ 179 (342)
...++.|-+.|+.+.- -+++|+++-|+||||+|||||+..+.. ...++.| -++++.-+ + +....+-.+-+
T Consensus 8 ~k~Y~~g~~aL~~vs~-~i~~Gef~fl~GpSGAGKSTllkLi~~--~e~pt~G-----~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 8 SKAYPGGREALRDVSF-HIPKGEFVFLTGPSGAGKSTLLKLIYG--EERPTRG-----KILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred hhhcCCCchhhhCceE-eecCceEEEEECCCCCCHHHHHHHHHh--hhcCCCc-----eEEECCeecccccccccchhhh
Confidence 3457788779999988 899999999999999999999997653 3333332 44444321 0 11111112222
Q ss_pred HcC-------CCh-hhhhcceeEee---cCCHH----HHHHHHHHH----------------------HHHhHhcCceEE
Q 019381 180 RYG-------LNG-ADVLENVAYAR---AYNTD----HQSRLLLEA----------------------ASMMVETRFALM 222 (342)
Q Consensus 180 ~~~-------~~~-~~~~~~i~~~~---~~~~~----~~~~~l~~l----------------------~~~~~~~~~~lv 222 (342)
+.| +-+ .++++|+.+.- ..... ...+.|+.+ .+....++|.++
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 222 211 13445543321 11111 111222211 112223789999
Q ss_pred EEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 223 IVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 223 viD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+-|+++..++++. + .++++.|.++.. .|+||++.+|-..
T Consensus 160 lADEPTGNLDp~~------s------~~im~lfeeinr-~GtTVl~ATHd~~ 198 (223)
T COG2884 160 LADEPTGNLDPDL------S------WEIMRLFEEINR-LGTTVLMATHDLE 198 (223)
T ss_pred eecCCCCCCChHH------H------HHHHHHHHHHhh-cCcEEEEEeccHH
Confidence 9999999887643 2 267777777754 5999999999765
No 86
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.12 E-value=4.2e-10 Score=104.73 Aligned_cols=145 Identities=17% Similarity=0.280 Sum_probs=86.9
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL---- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~---- 183 (342)
..|+.+-. -+++|+++.|.|+||||||||+..++ ...++..| .++++++.- ++...++...+..++
T Consensus 19 ~~L~~vsl-~i~~Gei~gIiG~sGaGKSTLlr~I~--gl~~p~~G-----~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~ 90 (343)
T TIGR02314 19 QALNNVSL-HVPAGQIYGVIGASGAGKSTLIRCVN--LLERPTSG-----SVIVDGQDLTTLSNSELTKARRQIGMIFQH 90 (343)
T ss_pred EEEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCce-----EEEECCEECCcCCHHHHHHHhcCEEEEECC
Confidence 45777666 79999999999999999999999654 56665544 566665431 122222222222221
Q ss_pred ---Ch-hhhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 184 ---NG-ADVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 184 ---~~-~~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
.+ .++.+|+.+... .+.. ...++++.+ .+.....+|+++++|++++.
T Consensus 91 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~ 170 (343)
T TIGR02314 91 FNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170 (343)
T ss_pred ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 11 123334332110 1111 111222211 11222368999999999998
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.. . ...++..|++++++.++|||+++|-..
T Consensus 171 LD~~--------t----~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 171 LDPA--------T----TQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred CCHH--------H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7642 2 237888899999888999999999765
No 87
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.11 E-value=9.9e-10 Score=97.79 Aligned_cols=144 Identities=20% Similarity=0.328 Sum_probs=80.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL----- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~----- 183 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++...- .+......+.+..++
T Consensus 17 il~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~~~~G-----~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 88 (243)
T TIGR02315 17 ALKNINL-NINPGEFVAIIGPSGAGKSTLLRCIN--RLVEPSSG-----SILLEGTDITKLRGKKLRKLRRRIGMIFQHY 88 (243)
T ss_pred eeecceE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCcCCCcc-----EEEECCEEhhhCCHHHHHHHHhheEEEcCCC
Confidence 4555555 78999999999999999999999654 55554433 455655321 111111111222221
Q ss_pred --Ch-hhhhcceeEeec------------CCH---HHHHHHHHHH----------------------HHHhHhcCceEEE
Q 019381 184 --NG-ADVLENVAYARA------------YNT---DHQSRLLLEA----------------------ASMMVETRFALMI 223 (342)
Q Consensus 184 --~~-~~~~~~i~~~~~------------~~~---~~~~~~l~~l----------------------~~~~~~~~~~lvv 223 (342)
.+ -++.+++.+... ... ....+.++.+ .+.....+|++++
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 168 (243)
T TIGR02315 89 NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLIL 168 (243)
T ss_pred cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11 123333322100 000 1111222111 1111226899999
Q ss_pred EeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 224 VDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 224 iD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+|++++.++. .. ...+.+.|++++++.+++||+++|-..
T Consensus 169 lDEPt~~LD~--------~~----~~~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 169 ADEPIASLDP--------KT----SKQVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred EeCCcccCCH--------HH----HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 9999987763 22 236777888887777899999999765
No 88
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.10 E-value=9.8e-11 Score=107.23 Aligned_cols=144 Identities=16% Similarity=0.275 Sum_probs=89.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHH--HHHHHHHHcCCChh
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQ--RLLQIADRYGLNGA 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~--rl~~~~~~~~~~~~ 186 (342)
.|+.+-- -+..|+++.|.||||||||||+..|| ++..++.| -++|+.+. .+++. .+...++++.+.|.
T Consensus 18 ~l~~i~l-~i~~Gef~vllGPSGcGKSTlLr~IA--GLe~~~~G-----~I~i~g~~vt~l~P~~R~iamVFQ~yALyPh 89 (338)
T COG3839 18 VLKDVNL-DIEDGEFVVLLGPSGCGKSTLLRMIA--GLEEPTSG-----EILIDGRDVTDLPPEKRGIAMVFQNYALYPH 89 (338)
T ss_pred eeecceE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----eEEECCEECCCCChhHCCEEEEeCCccccCC
Confidence 4555555 78999999999999999999999765 67765554 78887652 12221 22233455555444
Q ss_pred -hhhcceeEeecCC---HHHHHHHHHHH--------------------------HHHhHhcCceEEEEeccccccccccC
Q 019381 187 -DVLENVAYARAYN---TDHQSRLLLEA--------------------------ASMMVETRFALMIVDSATALYRTDFS 236 (342)
Q Consensus 187 -~~~~~i~~~~~~~---~~~~~~~l~~l--------------------------~~~~~~~~~~lvviD~l~~l~~~~~~ 236 (342)
++.+|+.|.-... ..+..+...++ .+.....+|+++.+|++.+.++..
T Consensus 90 mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~-- 167 (338)
T COG3839 90 MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-- 167 (338)
T ss_pred CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHH--
Confidence 5556655432211 11111111110 111223679999999998866532
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 237 GRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 237 ~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
-| ..+-..|+++.+++++|+|.++|-..
T Consensus 168 ------lR----~~mr~ei~~lh~~l~~T~IYVTHDq~ 195 (338)
T COG3839 168 ------LR----VLMRSEIKKLHERLGTTTIYVTHDQV 195 (338)
T ss_pred ------HH----HHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence 12 24555788889999999999999654
No 89
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.10 E-value=1.8e-09 Score=97.02 Aligned_cols=151 Identities=22% Similarity=0.288 Sum_probs=87.9
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHH-Hc----
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIAD-RY---- 181 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~-~~---- 181 (342)
+..+|.+.. .+.+|+++.|+|+||||||++++.+. .+++.+.+..-.+-++|++++ .++..+++++.- ..
T Consensus 18 v~av~~vs~-~i~~GE~lgiVGESGsGKS~~~~aim--~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIf 94 (316)
T COG0444 18 VKAVDGVSF-ELKKGEILGIVGESGSGKSVLAKAIM--GLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94 (316)
T ss_pred EEEEeceeE-EEcCCcEEEEEcCCCCCHHHHHHHHH--hccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEE
Confidence 457777777 89999999999999999999999654 455422121222355666553 233333222210 01
Q ss_pred -----CCChh-----hhhcceeEeecC-C----HHHHHHHHHHH-------------------------HHHhHhcCceE
Q 019381 182 -----GLNGA-----DVLENVAYARAY-N----TDHQSRLLLEA-------------------------ASMMVETRFAL 221 (342)
Q Consensus 182 -----~~~~~-----~~~~~i~~~~~~-~----~~~~~~~l~~l-------------------------~~~~~~~~~~l 221 (342)
.++|- .+.+-+..-... + .....++++.+ .+.....+|++
T Consensus 95 Q~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 95 QDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred cCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE
Confidence 11111 111111100000 0 11122222211 23333478999
Q ss_pred EEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 222 MIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 222 vviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
||.|++|.-++.. ...++++.|+++.+++++++|+++|--.
T Consensus 175 lIADEPTTALDvt------------~QaqIl~Ll~~l~~e~~~aiilITHDl~ 215 (316)
T COG0444 175 LIADEPTTALDVT------------VQAQILDLLKELQREKGTALILITHDLG 215 (316)
T ss_pred EEeCCCcchhhHH------------HHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999977632 1348999999999999999999999654
No 90
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=8.1e-10 Score=97.85 Aligned_cols=144 Identities=23% Similarity=0.291 Sum_probs=79.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL----- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~----- 183 (342)
.|+.+.. -+++|+++.|.|++|||||||+..++ ...++..| .++++...- .+......+.+..++
T Consensus 15 ~l~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~l~--G~~~p~~G-----~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 86 (235)
T cd03261 15 VLKGVDL-DVRRGEILAIIGPSGSGKSTLLRLIV--GLLRPDSG-----EVLIDGEDISGLSEAELYRLRRRMGMLFQSG 86 (235)
T ss_pred EEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCce-----EEEECCEEccccChhhHHHHhcceEEEccCc
Confidence 4555555 79999999999999999999999665 55555443 344544321 111001111111111
Q ss_pred --Chh-hhhcceeEee----cCCHHH----HHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 184 --NGA-DVLENVAYAR----AYNTDH----QSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 184 --~~~-~~~~~i~~~~----~~~~~~----~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
.+. ++.+++.+.. ..+... ..+.++.+ .+.....+++++++|++++.
T Consensus 87 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~ 166 (235)
T cd03261 87 ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAG 166 (235)
T ss_pred ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 111 2222322110 001110 11111111 11122368999999999997
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.. . ...+.+.|+.++++.+.+||+++|-..
T Consensus 167 LD~~--------~----~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 167 LDPI--------A----SGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred CCHH--------H----HHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 7642 2 237778888888777899999999765
No 91
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.09 E-value=1.2e-10 Score=100.45 Aligned_cols=149 Identities=20% Similarity=0.305 Sum_probs=90.8
Q ss_pred cCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHH--HHHcC
Q 019381 107 SGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQI--ADRYG 182 (342)
Q Consensus 107 tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~--~~~~~ 182 (342)
-|+..+|.+.. .+.+|+++.|.||+|+|||||... .....+|+.| .+++.++. ..++.++..+ .+.|.
T Consensus 15 GGl~Al~~Vsl-~v~~Gei~~LIGPNGAGKTTlfNl--itG~~~P~~G-----~v~~~G~~it~l~p~~iar~Gi~RTFQ 86 (250)
T COG0411 15 GGLTAVNDVSL-EVRPGEIVGLIGPNGAGKTTLFNL--ITGFYKPSSG-----TVIFRGRDITGLPPHRIARLGIARTFQ 86 (250)
T ss_pred CCEEEEeceeE-EEcCCeEEEEECCCCCCceeeeee--ecccccCCCc-----eEEECCcccCCCCHHHHHhccceeecc
Confidence 57778888888 899999999999999999999984 4466665544 66676652 2333332221 11221
Q ss_pred C---Chh-hhhcceeEeec-------------C--CH----HHHHHHHHHH----------------------HHHhHhc
Q 019381 183 L---NGA-DVLENVAYARA-------------Y--NT----DHQSRLLLEA----------------------ASMMVET 217 (342)
Q Consensus 183 ~---~~~-~~~~~i~~~~~-------------~--~~----~~~~~~l~~l----------------------~~~~~~~ 217 (342)
. -++ ++++|+.+... + .. +...+.++.+ .+.....
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT 166 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence 1 111 33444332100 0 00 1111112111 1112236
Q ss_pred CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 218 ~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
+|+++++|++.+-+.+ . +..++...++++.++.++||+++-|-.+-
T Consensus 167 ~P~lLLLDEPaAGln~--------~----e~~~l~~~i~~i~~~~g~tillIEHdM~~ 212 (250)
T COG0411 167 QPKLLLLDEPAAGLNP--------E----ETEELAELIRELRDRGGVTILLIEHDMKL 212 (250)
T ss_pred CCCEEEecCccCCCCH--------H----HHHHHHHHHHHHHhcCCcEEEEEEeccHH
Confidence 8999999999886543 2 23478888888888889999999998763
No 92
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.09 E-value=4.2e-10 Score=94.87 Aligned_cols=132 Identities=17% Similarity=0.264 Sum_probs=77.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCCChh--
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGLNGA-- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~-- 186 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..| .++++.+.- ..... +.+..++-++
T Consensus 17 ~l~~~~~-~i~~Ge~~~i~G~nGsGKStLl~~l~--G~~~~~~G-----~i~~~g~~~~~~~~~~---~~~~i~~~~q~~ 85 (173)
T cd03246 17 VLRNVSF-SIEPGESLAIIGPSGSGKSTLARLIL--GLLRPTSG-----RVRLDGADISQWDPNE---LGDHVGYLPQDD 85 (173)
T ss_pred ceeeeEE-EECCCCEEEEECCCCCCHHHHHHHHH--hccCCCCC-----eEEECCEEcccCCHHH---HHhheEEECCCC
Confidence 3444444 68899999999999999999999765 44454433 556665421 11211 1122222111
Q ss_pred -----hhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 019381 187 -----DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE 261 (342)
Q Consensus 187 -----~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~ 261 (342)
.+.+++ .+.-+ .+.+..+.+ ...+++++++|+++..++. ..+ ..+...|+.++++
T Consensus 86 ~~~~~tv~~~l-----LS~G~-~qrv~la~a--l~~~p~~lllDEPt~~LD~--------~~~----~~l~~~l~~~~~~ 145 (173)
T cd03246 86 ELFSGSIAENI-----LSGGQ-RQRLGLARA--LYGNPRILVLDEPNSHLDV--------EGE----RALNQAIAALKAA 145 (173)
T ss_pred ccccCcHHHHC-----cCHHH-HHHHHHHHH--HhcCCCEEEEECCccccCH--------HHH----HHHHHHHHHHHhC
Confidence 122222 11111 122222222 2368999999999987764 222 3667777777654
Q ss_pred hCCEEEEEecccc
Q 019381 262 FGVAVVITNQVVA 274 (342)
Q Consensus 262 ~~~~vi~~~h~~~ 274 (342)
+.+||+++|-..
T Consensus 146 -~~tii~~sh~~~ 157 (173)
T cd03246 146 -GATRIVIAHRPE 157 (173)
T ss_pred -CCEEEEEeCCHH
Confidence 899999998754
No 93
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=4.2e-10 Score=98.02 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=36.9
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++.. .+ ..+.+.|+.++++.+++||+++|-..
T Consensus 145 ~~p~llllDEP~~~LD~~--------~~----~~l~~~l~~~~~~~~~tii~~sH~~~ 190 (211)
T cd03298 145 RDKPVLLLDEPFAALDPA--------LR----AEMLDLVLDLHAETKMTVLMVTHQPE 190 (211)
T ss_pred cCCCEEEEcCCcccCCHH--------HH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 679999999999987642 22 36778888888777999999999765
No 94
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.08 E-value=7.9e-10 Score=96.63 Aligned_cols=143 Identities=15% Similarity=0.261 Sum_probs=78.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL----- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~----- 183 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+.- .+......+.+..++
T Consensus 18 il~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~~~~G-----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 89 (216)
T TIGR00960 18 ALDNLNF-HITKGEMVFLVGHSGAGKSTFLKLIL--GIEKPTRG-----KIRFNGQDLTRLRGREIPFLRRHIGMVFQDH 89 (216)
T ss_pred EEEeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCce-----EEEECCEehhhcChhHHHHHHHhceEEecCc
Confidence 4566555 78999999999999999999999665 55554433 455554321 111111111112211
Q ss_pred --Ch-hhhhcceeEee---cCCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 184 --NG-ADVLENVAYAR---AYNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 184 --~~-~~~~~~i~~~~---~~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
.+ ..+.+++.+.. .... ....+.++.+ .+.....+++++++|++++.+
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~L 169 (216)
T TIGR00960 90 RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNL 169 (216)
T ss_pred cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcC
Confidence 01 12222222110 0000 1111111111 111223689999999999987
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+. ..+ ..+.+.|++++++ +.+||+++|-..
T Consensus 170 D~--------~~~----~~l~~~l~~~~~~-~~tii~vsH~~~ 199 (216)
T TIGR00960 170 DP--------ELS----RDIMRLFEEFNRR-GTTVLVATHDIN 199 (216)
T ss_pred CH--------HHH----HHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 63 222 3667777777654 899999999765
No 95
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=1e-09 Score=102.52 Aligned_cols=146 Identities=17% Similarity=0.282 Sum_probs=81.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL---- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~---- 183 (342)
..|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++...- .+....+...+..++
T Consensus 19 ~il~~vsl-~i~~Gei~~iiG~nGsGKSTLlk~L~--Gl~~p~~G-----~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~ 90 (343)
T PRK11153 19 HALNNVSL-HIPAGEIFGVIGASGAGKSTLIRCIN--LLERPTSG-----RVLVDGQDLTALSEKELRKARRQIGMIFQH 90 (343)
T ss_pred EEEEeeEE-EEcCCCEEEEECCCCCcHHHHHHHHh--CCCCCCce-----EEEECCEECCcCCHHHHHHHhcCEEEEeCC
Confidence 45666655 79999999999999999999999654 55555443 444444321 111111111111111
Q ss_pred ---Ch-hhhhcceeEee---cCCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 184 ---NG-ADVLENVAYAR---AYNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 184 ---~~-~~~~~~i~~~~---~~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
.+ .++.+|+.+.. ..+. ....+.++.+ .+.....+|+++++|++++.
T Consensus 91 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~ 170 (343)
T PRK11153 91 FNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSA 170 (343)
T ss_pred CccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 11 11222221110 0000 0111111110 11222368999999999998
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
++. ..+ ..+.+.|+.++++.++|||+++|-...
T Consensus 171 LD~--------~~~----~~l~~~L~~l~~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 171 LDP--------ATT----RSILELLKDINRELGLTIVLITHEMDV 203 (343)
T ss_pred CCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 764 222 377888888888889999999998653
No 96
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=1e-09 Score=97.54 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=36.6
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 161 ~~p~llllDEPt~~LD~--------~~----~~~l~~~l~~~~~~~~~tii~~tH~~~ 206 (241)
T cd03256 161 QQPKLILADEPVASLDP--------AS----SRQVMDLLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred cCCCEEEEeCccccCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999999997763 22 237778888888777899999999765
No 97
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=1.5e-09 Score=96.00 Aligned_cols=144 Identities=20% Similarity=0.292 Sum_probs=79.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL----- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~----- 183 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++...- .+........+..++
T Consensus 20 il~~~s~-~i~~Ge~~~l~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (233)
T cd03258 20 ALKDVSL-SVPKGEIFGIIGRSGAGKSTLIRCIN--GLERPTSG-----SVLVDGTDLTLLSGKELRKARRRIGMIFQHF 91 (233)
T ss_pred eeecceE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----eEEECCEEcccCCHHHHHHHHhheEEEccCc
Confidence 4555555 78999999999999999999999664 55555433 445544321 111111111111111
Q ss_pred --Ch-hhhhcceeEe---ecCCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 184 --NG-ADVLENVAYA---RAYNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 184 --~~-~~~~~~i~~~---~~~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
.+ ..+.+++.+. ..... ....+.++.+ .+.....+++++++|+++.-+
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~L 171 (233)
T cd03258 92 NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171 (233)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcC
Confidence 11 1122222110 00000 0111111111 111123689999999999877
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 172 D~--------~~----~~~l~~~l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 172 DP--------ET----TQSILALLRDINRELGLTIVLITHEME 202 (233)
T ss_pred CH--------HH----HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 53 22 236778888888777899999999765
No 98
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.06 E-value=1.2e-09 Score=105.27 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=49.5
Q ss_pred HhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccc
Q 019381 215 VETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNI 294 (342)
Q Consensus 215 ~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~ 294 (342)
...+|+++|.|+++..++.. . ..+++..|+++.+++|+++|+++|--. .
T Consensus 169 La~~P~LLIaDEPTTaLDvt-------~-----q~qIL~llk~l~~e~g~a~l~ITHDl~-------------------V 217 (539)
T COG1123 169 LALKPKLLIADEPTTALDVT-------T-----QAQILDLLKDLQRELGMAVLFITHDLG-------------------V 217 (539)
T ss_pred HhCCCCEEEECCCccccCHH-------H-----HHHHHHHHHHHHHHcCcEEEEEcCCHH-------------------H
Confidence 34789999999999987642 1 248999999999999999999999754 3
Q ss_pred cccccceEEEEEee
Q 019381 295 MAHASTTRLALRKG 308 (342)
Q Consensus 295 ~~~~~d~~l~l~~~ 308 (342)
.++.+|.+++++++
T Consensus 218 va~~aDrv~Vm~~G 231 (539)
T COG1123 218 VAELADRVVVMYKG 231 (539)
T ss_pred HHHhcCeEEEEECC
Confidence 44566777777654
No 99
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=1e-09 Score=97.49 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=89.0
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC----
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL---- 183 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~---- 183 (342)
....+|++.- -|+.|+++.+.|||||||||++..|| ++..++.| -++++.+--++..++....++.|+
T Consensus 14 ~~~a~~di~l-~i~~Ge~vaLlGpSGaGKsTlLRiIA--GLe~p~~G-----~I~~~~~~l~D~~~~~~~~R~VGfvFQ~ 85 (345)
T COG1118 14 AFGALDDISL-DIKSGELVALLGPSGAGKSTLLRIIA--GLETPDAG-----RIRLNGRVLFDVSNLAVRDRKVGFVFQH 85 (345)
T ss_pred ccccccccee-eecCCcEEEEECCCCCcHHHHHHHHh--CcCCCCCc-----eEEECCEeccchhccchhhcceeEEEec
Confidence 3455666655 78999999999999999999999655 67766655 555655522222222222222222
Q ss_pred ---Chh-hhhcceeEeec-----CC----HHHHHHHHHHH----------------------HHHhHhcCceEEEEeccc
Q 019381 184 ---NGA-DVLENVAYARA-----YN----TDHQSRLLLEA----------------------ASMMVETRFALMIVDSAT 228 (342)
Q Consensus 184 ---~~~-~~~~~i~~~~~-----~~----~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~ 228 (342)
-+. ++.+||.|--. .+ .....++|..+ .+....-.|+++.+|++.
T Consensus 86 YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 86 YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 121 45556554321 11 11222222211 122233579999999998
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.-++.. - ..++-+.|+++-.++++++++++|--.
T Consensus 166 ~ALDa~--------v----r~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 166 GALDAK--------V----RKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred hhhhHH--------H----HHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 876532 2 236667888889999999999999654
No 100
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=5.8e-10 Score=94.19 Aligned_cols=148 Identities=16% Similarity=0.233 Sum_probs=83.3
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCC----HHHHHHH----HHHc
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFR----PQRLLQI----ADRY 181 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~----~~rl~~~----~~~~ 181 (342)
..|..+.. .|+++.++++.||||||||||+..+-...-+- .+-.-.+-+++++++-+. ...+|.. +++-
T Consensus 21 ~aL~~i~l-~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~--~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 21 HALKDINL-DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI--PGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred hhhccCce-eccCCceEEEECCCCcCHHHHHHHHHhhcccC--cCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 45555555 89999999999999999999999654332221 111112345555553322 3333221 2222
Q ss_pred CCChhhhhcceeEeecC-CH--HHHHHHHH----------HH--------------------HHHhHhcCceEEEEeccc
Q 019381 182 GLNGADVLENVAYARAY-NT--DHQSRLLL----------EA--------------------ASMMVETRFALMIVDSAT 228 (342)
Q Consensus 182 ~~~~~~~~~~i~~~~~~-~~--~~~~~~l~----------~l--------------------~~~~~~~~~~lvviD~l~ 228 (342)
+.-|.++++|+.+.... .. ..+.+..+ ++ .+.....+|+++.+|+++
T Consensus 98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 23344666666543111 00 11111111 11 222233679999999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.+++- +. ..+.+++..|| .+-|||+++|-..
T Consensus 178 SALDPI-------sT--~kIEeLi~eLk-----~~yTIviVTHnmq 209 (253)
T COG1117 178 SALDPI-------ST--LKIEELITELK-----KKYTIVIVTHNMQ 209 (253)
T ss_pred cccCch-------hH--HHHHHHHHHHH-----hccEEEEEeCCHH
Confidence 988752 21 12566666666 3689999998754
No 101
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.06 E-value=1.2e-09 Score=91.12 Aligned_cols=129 Identities=19% Similarity=0.320 Sum_probs=78.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhc
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLE 190 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~ 190 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..| .++++.+.- ....... ....
T Consensus 15 vl~~i~~-~i~~Ge~~~l~G~nGsGKSTLl~~i~--G~~~~~~G-----~v~~~g~~~-~~~~~~~----------~~~~ 75 (163)
T cd03216 15 ALDGVSL-SVRRGEVHALLGENGAGKSTLMKILS--GLYKPDSG-----EILVDGKEV-SFASPRD----------ARRA 75 (163)
T ss_pred EEeeeEE-EEeCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCe-----EEEECCEEC-CcCCHHH----------HHhc
Confidence 3444444 69999999999999999999999654 55554433 566665421 1100000 0111
Q ss_pred ceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Q 019381 191 NVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITN 270 (342)
Q Consensus 191 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~ 270 (342)
++.+....+.-+. +.+..++++ ..+|+++++|+++.-++. ..+ ..+...|+.++++ +.++|+++
T Consensus 76 ~i~~~~qLS~G~~-qrl~laral--~~~p~illlDEP~~~LD~--------~~~----~~l~~~l~~~~~~-~~tiii~s 139 (163)
T cd03216 76 GIAMVYQLSVGER-QMVEIARAL--ARNARLLILDEPTAALTP--------AEV----ERLFKVIRRLRAQ-GVAVIFIS 139 (163)
T ss_pred CeEEEEecCHHHH-HHHHHHHHH--hcCCCEEEEECCCcCCCH--------HHH----HHHHHHHHHHHHC-CCEEEEEe
Confidence 2333322333322 222222233 368999999999987653 222 3677777777654 89999999
Q ss_pred cccc
Q 019381 271 QVVA 274 (342)
Q Consensus 271 h~~~ 274 (342)
|-..
T Consensus 140 h~~~ 143 (163)
T cd03216 140 HRLD 143 (163)
T ss_pred CCHH
Confidence 8865
No 102
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=1.8e-09 Score=91.53 Aligned_cols=138 Identities=22% Similarity=0.327 Sum_probs=80.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCCCh---
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGLNG--- 185 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~--- 185 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..| .++++...- .+. ......+..++-+
T Consensus 15 ~l~~i~~-~i~~G~~~~i~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~~~~~~~~-~~~~~~~~i~~~~q~~ 85 (178)
T cd03229 15 VLNDVSL-NIEAGEIVALLGPSGSGKSTLLRCIA--GLEEPDSG-----SILIDGEDLTDLED-ELPPLRRRIGMVFQDF 85 (178)
T ss_pred EEeeeeE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCce-----EEEECCEEccccch-hHHHHhhcEEEEecCC
Confidence 3444444 78999999999999999999999765 45554333 566655421 110 0111111222111
Q ss_pred -----hhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 019381 186 -----ADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLAD 260 (342)
Q Consensus 186 -----~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~ 260 (342)
..+.+++.+. .+.-+ .+.+..+.+ ...+++++++|+++.-++. .. ...+...|+.+++
T Consensus 86 ~~~~~~t~~~~l~~~--lS~G~-~qr~~la~a--l~~~p~llilDEP~~~LD~--------~~----~~~l~~~l~~~~~ 148 (178)
T cd03229 86 ALFPHLTVLENIALG--LSGGQ-QQRVALARA--LAMDPDVLLLDEPTSALDP--------IT----RREVRALLKSLQA 148 (178)
T ss_pred ccCCCCCHHHheeec--CCHHH-HHHHHHHHH--HHCCCCEEEEeCCcccCCH--------HH----HHHHHHHHHHHHH
Confidence 1222333221 12111 122222222 2368999999999997753 22 2367777888887
Q ss_pred HhCCEEEEEecccc
Q 019381 261 EFGVAVVITNQVVA 274 (342)
Q Consensus 261 ~~~~~vi~~~h~~~ 274 (342)
+++.++|+++|-..
T Consensus 149 ~~~~tiii~sH~~~ 162 (178)
T cd03229 149 QLGITVVLVTHDLD 162 (178)
T ss_pred hcCCEEEEEeCCHH
Confidence 76899999999765
No 103
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.05 E-value=3.8e-10 Score=98.76 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=36.3
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++.. . ...+.+.|+.++++.+.+||+++|-..
T Consensus 157 ~~p~lllLDEP~~~LD~~--------~----~~~l~~~l~~~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 157 NDPKIILADEPTGNLDSE--------T----GKEVMELLRELNKEAGTTIVVVTHDPE 202 (218)
T ss_pred cCCCEEEEcCCcccCCHH--------H----HHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 689999999999977642 2 237777888888767899999999754
No 104
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=1.4e-09 Score=98.89 Aligned_cols=143 Identities=20% Similarity=0.336 Sum_probs=83.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC---C---
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL---N--- 184 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~---~--- 184 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+.- .......+.+..++ +
T Consensus 22 ~l~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G-----~i~~~g~~i-~~~~~~~~~~~i~~v~q~~~~ 92 (279)
T PRK13650 22 TLNDVSF-HVKQGEWLSIIGHNGSGKSTTVRLID--GLLEAESG-----QIIIDGDLL-TEENVWDIRHKIGMVFQNPDN 92 (279)
T ss_pred eeeeeEE-EEeCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----EEEECCEEC-CcCcHHHHHhhceEEEcChHH
Confidence 5666666 79999999999999999999999654 55555443 566665421 11011111112211 1
Q ss_pred ---hhhhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccc
Q 019381 185 ---GADVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 185 ---~~~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~ 232 (342)
...+.+++.+... .+.. ...+.++.+ .+.....+|+++++|++++.++
T Consensus 93 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD 172 (279)
T PRK13650 93 QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172 (279)
T ss_pred hcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 1123334332210 1111 111111111 1122236899999999999876
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
. .. ...++..|+.++++.+.|||+++|-..
T Consensus 173 ~--------~~----~~~l~~~l~~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 173 P--------EG----RLELIKTIKGIRDDYQMTVISITHDLD 202 (279)
T ss_pred H--------HH----HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 3 22 237888888888878999999999865
No 105
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.04 E-value=5.6e-09 Score=88.59 Aligned_cols=137 Identities=23% Similarity=0.339 Sum_probs=81.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHH-------HHHHHc
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLL-------QIADRY 181 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~-------~~~~~~ 181 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..| .++++...- .....++ ++++.+
T Consensus 14 ~l~~~~~-~i~~G~~~~l~G~nGsGKStLl~~i~--G~~~~~~G-----~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~ 85 (180)
T cd03214 14 VLDDLSL-SIEAGEIVGILGPNGAGKSTLLKTLA--GLLKPSSG-----EILLDGKDLASLSPKELARKIAYVPQALELL 85 (180)
T ss_pred eEeeeEE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----EEEECCEECCcCCHHHHHHHHhHHHHHHHHc
Confidence 3455544 68999999999999999999999654 55554433 566665421 1222211 123344
Q ss_pred CCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 019381 182 GLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE 261 (342)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~ 261 (342)
++.. ..++ .....+.-+ .+.+..++++ ..+|+++++|+++.-++.. . ...+.+.|+.++++
T Consensus 86 gl~~--~~~~--~~~~LS~G~-~qrl~laral--~~~p~llllDEP~~~LD~~--------~----~~~~~~~l~~~~~~ 146 (180)
T cd03214 86 GLAH--LADR--PFNELSGGE-RQRVLLARAL--AQEPPILLLDEPTSHLDIA--------H----QIELLELLRRLARE 146 (180)
T ss_pred CCHh--HhcC--CcccCCHHH-HHHHHHHHHH--hcCCCEEEEeCCccCCCHH--------H----HHHHHHHHHHHHHh
Confidence 4431 1111 111222222 2222222232 3689999999999877532 2 23677778887776
Q ss_pred hCCEEEEEecccc
Q 019381 262 FGVAVVITNQVVA 274 (342)
Q Consensus 262 ~~~~vi~~~h~~~ 274 (342)
++.++|+++|-..
T Consensus 147 ~~~tiii~sh~~~ 159 (180)
T cd03214 147 RGKTVVMVLHDLN 159 (180)
T ss_pred cCCEEEEEeCCHH
Confidence 6899999998865
No 106
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.04 E-value=1.2e-09 Score=96.47 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=36.8
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++.++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 131 ~~p~lllLDEPt~gLD~--------~~----~~~l~~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDA--------LT----RGNLQEELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred cCCCEEEEcCCCcCCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999999997764 22 237778888888877999999999765
No 107
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.04 E-value=2.3e-09 Score=103.24 Aligned_cols=161 Identities=20% Similarity=0.311 Sum_probs=97.0
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC-CCCHHHHHHHHHHc------
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG-TFRPQRLLQIADRY------ 181 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~-~~~~~rl~~~~~~~------ 181 (342)
+..+|.+.. -+.+|+++.|.|+|||||||++..++ .+.++..| .+.++... .....+.+.+....
T Consensus 304 ~~Av~~VSf-~l~~GE~lglVGeSGsGKSTlar~i~--gL~~P~~G-----~i~~~g~~~~~~~~~~~~~r~~~QmvFQd 375 (539)
T COG1123 304 VKAVDDVSF-DLREGETLGLVGESGSGKSTLARILA--GLLPPSSG-----SIIFDGQDLDLTGGELRRLRRRIQMVFQD 375 (539)
T ss_pred eeeeeeeee-EecCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----eEEEeCcccccccchhhhhhhheEEEEeC
Confidence 456777777 79999999999999999999999654 56655433 44444432 11111122221111
Q ss_pred ---CCChh----hhh-cceeEeecCCHH----HHHHHHHHH-----------------------HHHhHhcCceEEEEec
Q 019381 182 ---GLNGA----DVL-ENVAYARAYNTD----HQSRLLLEA-----------------------ASMMVETRFALMIVDS 226 (342)
Q Consensus 182 ---~~~~~----~~~-~~i~~~~~~~~~----~~~~~l~~l-----------------------~~~~~~~~~~lvviD~ 226 (342)
.++|. +++ +.+.+....... .+.++++.+ .+.....+|++||.|+
T Consensus 376 p~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DE 455 (539)
T COG1123 376 PYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDE 455 (539)
T ss_pred cccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecC
Confidence 11221 111 111111111111 111112111 2223346899999999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEE
Q 019381 227 ATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALR 306 (342)
Q Consensus 227 l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~ 306 (342)
+.+.++... ...+++.|+++.+++|+|.++++|-.. .+.+.+|.+..++
T Consensus 456 p~SaLDvsv------------qa~VlnLl~~lq~e~g~t~lfISHDl~-------------------vV~~i~drv~vm~ 504 (539)
T COG1123 456 PVSALDVSV------------QAQVLNLLKDLQEELGLTYLFISHDLA-------------------VVRYIADRVAVMY 504 (539)
T ss_pred CccccCHHH------------HHHHHHHHHHHHHHhCCEEEEEeCCHH-------------------HHHhhCceEEEEE
Confidence 999876421 348999999999999999999999765 3556888888888
Q ss_pred ee
Q 019381 307 KG 308 (342)
Q Consensus 307 ~~ 308 (342)
++
T Consensus 505 ~G 506 (539)
T COG1123 505 DG 506 (539)
T ss_pred CC
Confidence 64
No 108
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=5.5e-10 Score=97.41 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=36.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 147 ~~p~~lllDEPt~~LD~--------~~----~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 147 REPSLLLLDEPLSALDA--------KL----REELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred cCCCEEEEcCCcccCCH--------HH----HHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 67999999999997763 22 237778888888777999999999765
No 109
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.04 E-value=3.9e-09 Score=92.35 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=83.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHH--HHHHHHHcCCChh--
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQR--LLQIADRYGLNGA-- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~r--l~~~~~~~~~~~~-- 186 (342)
..-++.. -||+|+++.+.|++|+||||.+..+ .+.+.|..| .+-+.+-.+|...+ ++.+.--++....
T Consensus 39 AVqdisf-~IP~G~ivgflGaNGAGKSTtLKmL--TGll~p~~G-----~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~ 110 (325)
T COG4586 39 AVQDISF-EIPKGEIVGFLGANGAGKSTTLKML--TGLLLPTSG-----KVRVNGKDPFRRREEYLRSIGLVMGQKLQLW 110 (325)
T ss_pred hhheeee-ecCCCcEEEEEcCCCCcchhhHHHH--hCccccCCC-----eEEecCcCcchhHHHHHHHHHHHhhhhheee
Confidence 4444555 7999999999999999999999964 465555444 55566666665322 2222111111000
Q ss_pred ---------hhhcceeEeecCCH----HHHHHHHH----------------HHH---HHhHhcCceEEEEeccccccccc
Q 019381 187 ---------DVLENVAYARAYNT----DHQSRLLL----------------EAA---SMMVETRFALMIVDSATALYRTD 234 (342)
Q Consensus 187 ---------~~~~~i~~~~~~~~----~~~~~~l~----------------~l~---~~~~~~~~~lvviD~l~~l~~~~ 234 (342)
.+..-++-+..... ..+.++++ +.+ +...-++|+++++|+++--++.
T Consensus 111 Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV- 189 (325)
T COG4586 111 WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV- 189 (325)
T ss_pred eechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch-
Confidence 01111110000000 01111110 000 1111288999999999986543
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 235 FSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 235 ~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
..+ .++.+.|+.+..++++||++++|.....
T Consensus 190 -------~aq----~~ir~Flke~n~~~~aTVllTTH~~~di 220 (325)
T COG4586 190 -------NAQ----ANIREFLKEYNEERQATVLLTTHIFDDI 220 (325)
T ss_pred -------hHH----HHHHHHHHHHHHhhCceEEEEecchhhH
Confidence 222 3677889999999999999999987633
No 110
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=1.7e-09 Score=91.11 Aligned_cols=134 Identities=24% Similarity=0.324 Sum_probs=78.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA---- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~---- 186 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+.-... . ..+.+..++-++
T Consensus 15 ~l~~~~~-~i~~Ge~~~i~G~nGsGKStLl~~l~--G~~~~~~G-----~i~~~g~~~~~~-~-~~~~~~i~~~~q~~~~ 84 (173)
T cd03230 15 ALDDISL-TVEKGEIYGLLGPNGAGKTTLIKIIL--GLLKPDSG-----EIKVLGKDIKKE-P-EEVKRRIGYLPEEPSL 84 (173)
T ss_pred eeeeeEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCe-----EEEECCEEcccc-h-HhhhccEEEEecCCcc
Confidence 3454444 78999999999999999999999654 45554433 456655421111 0 111122222111
Q ss_pred ----hhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 019381 187 ----DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF 262 (342)
Q Consensus 187 ----~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~ 262 (342)
.+.+++. .+.-+ .+.+.-+.+ ...+|+++++|++++.++. ..+ ..+.+.|+.++++
T Consensus 85 ~~~~tv~~~~~----LS~G~-~qrv~lara--l~~~p~illlDEPt~~LD~--------~~~----~~l~~~l~~~~~~- 144 (173)
T cd03230 85 YENLTVRENLK----LSGGM-KQRLALAQA--LLHDPELLILDEPTSGLDP--------ESR----REFWELLRELKKE- 144 (173)
T ss_pred ccCCcHHHHhh----cCHHH-HHHHHHHHH--HHcCCCEEEEeCCccCCCH--------HHH----HHHHHHHHHHHHC-
Confidence 1111111 11111 112222222 2378999999999998763 222 3777888888776
Q ss_pred CCEEEEEecccc
Q 019381 263 GVAVVITNQVVA 274 (342)
Q Consensus 263 ~~~vi~~~h~~~ 274 (342)
+.++|+++|-..
T Consensus 145 g~tiii~th~~~ 156 (173)
T cd03230 145 GKTILLSSHILE 156 (173)
T ss_pred CCEEEEECCCHH
Confidence 899999998754
No 111
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.03 E-value=3.7e-09 Score=92.21 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=35.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..| .++++.+
T Consensus 16 ~l~~~sl-~i~~G~~~~i~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~ 63 (214)
T cd03292 16 ALDGINI-SISAGEFVFLVGPSGAGKSTLLKLIY--KEELPTSG-----TIRVNGQ 63 (214)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCce-----EEEECCE
Confidence 4555555 78999999999999999999999765 45554433 4455543
No 112
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.03 E-value=2.2e-09 Score=93.39 Aligned_cols=45 Identities=24% Similarity=0.387 Sum_probs=35.3
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++.. .+ ..+.+.|+.++++ +.+||+++|-..
T Consensus 151 ~~p~llllDEPt~~LD~~--------~~----~~~~~~l~~~~~~-~~tvi~~sH~~~ 195 (211)
T cd03225 151 MDPDILLLDEPTAGLDPA--------GR----RELLELLKKLKAE-GKTIIIVTHDLD 195 (211)
T ss_pred cCCCEEEEcCCcccCCHH--------HH----HHHHHHHHHHHHc-CCEEEEEeCCHH
Confidence 679999999999987642 22 3677778888776 899999999765
No 113
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=4.8e-10 Score=105.08 Aligned_cols=145 Identities=15% Similarity=0.204 Sum_probs=82.4
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCCh
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNG 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~ 185 (342)
..|+.+-. -+++|+++.|.||||||||||+..++ ...++..| .++++.+.- .++.+ +..+.+...+.+
T Consensus 18 ~~l~~vsl-~i~~Ge~~~llG~sGsGKSTLLr~ia--Gl~~p~~G-----~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp 89 (356)
T PRK11650 18 QVIKGIDL-DVADGEFIVLVGPSGCGKSTLLRMVA--GLERITSG-----EIWIGGRVVNELEPADRDIAMVFQNYALYP 89 (356)
T ss_pred EEEeeeeE-EEcCCCEEEEECCCCCcHHHHHHHHH--CCCCCCce-----EEEECCEECCCCCHHHCCEEEEeCCccccC
Confidence 35666655 78999999999999999999999765 55555444 555555421 11111 000111111111
Q ss_pred h-hhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEecccccccccc
Q 019381 186 A-DVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDF 235 (342)
Q Consensus 186 ~-~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~ 235 (342)
. ++.+|+.+... .+.. ...+.++.+ .+.....+|+++++|++++-++.
T Consensus 90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~-- 167 (356)
T PRK11650 90 HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA-- 167 (356)
T ss_pred CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH--
Confidence 1 23333332110 0110 111111110 11122368999999999987653
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 236 SGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 236 ~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..| ..+...|+++.++.++|+|+++|-..
T Consensus 168 ------~~r----~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 168 ------KLR----VQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred ------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 222 36777888888888999999999654
No 114
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.02 E-value=3.3e-09 Score=92.98 Aligned_cols=144 Identities=17% Similarity=0.234 Sum_probs=79.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHH-HHcCC----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIA-DRYGL---- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~-~~~~~---- 183 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+.- .+......+. +..++
T Consensus 20 ~l~~isl-~i~~G~~~~i~G~nGsGKSTLl~~i~--G~~~~~~G-----~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 91 (221)
T TIGR02211 20 VLKGVSL-SIGKGEIVAIVGSSGSGKSTLLHLLG--GLDNPTSG-----EVLFNGQSLSKLSSNERAKLRNKKLGFIYQF 91 (221)
T ss_pred eEeeeEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----EEEECCEEhhhcCHhHHHHHHHhcEEEEecc
Confidence 4555555 78999999999999999999999765 45554433 455554321 1111111111 11111
Q ss_pred ---Ch-hhhhcceeEe---ecCCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 184 ---NG-ADVLENVAYA---RAYNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 184 ---~~-~~~~~~i~~~---~~~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
.+ ..+.+++.+. ...... ...+.++.+ .+.....+++++++|++++-
T Consensus 92 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~ 171 (221)
T TIGR02211 92 HHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGN 171 (221)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence 11 1222232210 001100 111111110 11122368999999999987
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.. . ...+.+.|+.++++.+.+||+++|-..
T Consensus 172 LD~~--------~----~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 172 LDNN--------N----AKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred CCHH--------H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7632 2 236777888888777899999999764
No 115
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.7e-09 Score=98.89 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=37.6
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++.. . ...+.+.|+.++++.+.|||+++|-..
T Consensus 162 ~~P~llllDEPt~~LD~~--------~----~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPK--------G----RKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred cCCCEEEEECCcccCCHH--------H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 689999999999977642 2 237888888888888999999999876
No 116
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=5.9e-10 Score=104.24 Aligned_cols=145 Identities=15% Similarity=0.245 Sum_probs=82.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCChh
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNGA 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~~ 186 (342)
.|+.+-. -+.+|+++.|.||+|||||||+..++ ...++..| .++++.+.- .+..+ +..+.+.+.+.+.
T Consensus 21 ~l~~isl-~i~~Ge~~~llGpsGsGKSTLLr~Ia--Gl~~p~~G-----~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ 92 (351)
T PRK11432 21 VIDNLNL-TIKQGTMVTLLGPSGCGKTTVLRLVA--GLEKPTEG-----QIFIDGEDVTHRSIQQRDICMVFQSYALFPH 92 (351)
T ss_pred EEeeeEE-EEcCCCEEEEECCCCCcHHHHHHHHH--CCCCCCce-----EEEECCEECCCCCHHHCCEEEEeCCcccCCC
Confidence 4666655 78999999999999999999999655 66665544 455554311 11110 0011122222211
Q ss_pred -hhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccC
Q 019381 187 -DVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFS 236 (342)
Q Consensus 187 -~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~ 236 (342)
++.+|+.+... .+.. ...+.++.+ .+.....+|+++++|++.+.++.
T Consensus 93 ~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~--- 169 (351)
T PRK11432 93 MSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA--- 169 (351)
T ss_pred CCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH---
Confidence 23333332100 0111 111111100 11122367999999999987753
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 237 GRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 237 ~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
..| .++...|+.+.++.++|+|+++|-...
T Consensus 170 -----~~r----~~l~~~l~~l~~~~g~tii~vTHd~~e 199 (351)
T PRK11432 170 -----NLR----RSMREKIRELQQQFNITSLYVTHDQSE 199 (351)
T ss_pred -----HHH----HHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 222 267778888888889999999997653
No 117
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=5.7e-09 Score=96.86 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=37.9
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++|+|++++.++. .. ...+++.|+++.++.+.++|+++|-..
T Consensus 171 ~~P~lLilDEPts~LD~--------~~----~~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 171 LDPDVVVADEPVSALDV--------SV----QAQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred cCCCEEEEECCCccCCH--------HH----HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 68999999999998764 22 237888899998888999999999765
No 118
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.02 E-value=8.6e-10 Score=97.05 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=78.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHH----HHHcCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQI----ADRYGL 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~----~~~~~~ 183 (342)
..|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+.. .+....+.. .+...+
T Consensus 21 ~il~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l 92 (225)
T PRK10247 21 KILNNISF-SLRAGEFKLITGPSGCGKSTLLKIVA--SLISPTSG-----TLLFEGEDISTLKPEIYRQQVSYCAQTPTL 92 (225)
T ss_pred eeeeccEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cccCCCCC-----eEEECCEEcCcCCHHHHHhccEEEeccccc
Confidence 34666655 78999999999999999999999664 44454443 344443211 111111100 000001
Q ss_pred ChhhhhcceeEe---ecC--CHHHHHHHHHHH-----------------------HHHhHhcCceEEEEecccccccccc
Q 019381 184 NGADVLENVAYA---RAY--NTDHQSRLLLEA-----------------------ASMMVETRFALMIVDSATALYRTDF 235 (342)
Q Consensus 184 ~~~~~~~~i~~~---~~~--~~~~~~~~l~~l-----------------------~~~~~~~~~~lvviD~l~~l~~~~~ 235 (342)
.+..+.+++.+. ... ......+.++.+ .+.....+|+++++|+++.-++..
T Consensus 93 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~- 171 (225)
T PRK10247 93 FGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES- 171 (225)
T ss_pred ccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH-
Confidence 111222222110 000 000111111110 111223689999999999877532
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 236 SGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 236 ~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
. ...+...|+.++++.+.+||+++|-..
T Consensus 172 -------~----~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 172 -------N----KHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred -------H----HHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 2 236777888888877999999998764
No 119
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.02 E-value=1.9e-09 Score=99.24 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=80.9
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC-----
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL----- 183 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~----- 183 (342)
...|+.+.. -+++|+++.|.||+|+|||||+..++ ...++..| .+++++...... . ....+..++
T Consensus 20 ~~~l~~vsl-~i~~Gei~gllGpNGaGKSTLl~~l~--Gl~~p~~G-----~v~i~G~~~~~~-~-~~~~~~ig~v~q~~ 89 (306)
T PRK13537 20 KLVVDGLSF-HVQRGECFGLLGPNGAGKTTTLRMLL--GLTHPDAG-----SISLCGEPVPSR-A-RHARQRVGVVPQFD 89 (306)
T ss_pred eEEEecceE-EEeCCcEEEEECCCCCCHHHHHHHHh--cCCCCCce-----EEEECCEecccc-h-HHHHhcEEEEeccC
Confidence 346777766 79999999999999999999999765 55555444 445544321110 0 011111211
Q ss_pred --Chh-hhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 184 --NGA-DVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 184 --~~~-~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
.+. ++.+++.+... .+.. ...++++.+ .+....++|+++++|+++.-+
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gL 169 (306)
T PRK13537 90 NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169 (306)
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCC
Confidence 110 12222211100 0000 011111100 112223789999999999977
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
+. ..+ ..+.+.|++++++ |+|||+++|.....
T Consensus 170 D~--------~~~----~~l~~~l~~l~~~-g~till~sH~l~e~ 201 (306)
T PRK13537 170 DP--------QAR----HLMWERLRSLLAR-GKTILLTTHFMEEA 201 (306)
T ss_pred CH--------HHH----HHHHHHHHHHHhC-CCEEEEECCCHHHH
Confidence 64 222 2677777877654 89999999987743
No 120
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.02 E-value=2.9e-10 Score=106.46 Aligned_cols=145 Identities=18% Similarity=0.273 Sum_probs=85.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHH--------HH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIA--------DR 180 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~--------~~ 180 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++|+++.- .+...++... +.
T Consensus 8 ~l~~vs~-~i~~Gei~~l~G~sGsGKSTLLr~L~--Gl~~p~~G-----~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 8 GVNDADL-AIAKGEIFVIMGLSGSGKSTTVRMLN--RLIEPTAG-----QIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred eEEeeEE-EEcCCCEEEEECCCCChHHHHHHHHh--CCCCCCce-----EEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 3555555 78999999999999999999999654 55665444 566766532 1222221111 11
Q ss_pred cCCChh-hhhcceeEeec---CCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 181 YGLNGA-DVLENVAYARA---YNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 181 ~~~~~~-~~~~~i~~~~~---~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
..+.+. ++.+|+.+... .+. ....++++.+ .+.....+++++++|++++-
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 122221 33344432211 111 1111222111 11222368999999999987
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
+++ ..+ ..+.+.|+.+.++.+.|||+++|-...
T Consensus 160 LD~--------~~r----~~l~~~l~~l~~~~~~Tii~vTHd~~e 192 (363)
T TIGR01186 160 LDP--------LIR----DSMQDELKKLQATLQKTIVFITHDLDE 192 (363)
T ss_pred CCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 764 222 367778888888889999999997763
No 121
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=2.4e-09 Score=97.12 Aligned_cols=143 Identities=17% Similarity=0.278 Sum_probs=80.4
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC---Ch-
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL---NG- 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~---~~- 185 (342)
+.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..| .++++...- .......+....++ ++
T Consensus 19 ~~l~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G-----~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~ 89 (274)
T PRK13647 19 KALKGLSL-SIPEGSKTALLGPNGAGKSTLLLHLN--GIYLPQRG-----RVKVMGREV-NAENEKWVRSKVGLVFQDPD 89 (274)
T ss_pred eeeeeEEE-EEcCCCEEEEECCCCCcHHHHHHHHh--cCCCCCce-----EEEECCEEC-CCCCHHHHHhhEEEEecChh
Confidence 35666655 78999999999999999999999664 55555444 455554321 10000111111221 00
Q ss_pred -----hhhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 186 -----ADVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 186 -----~~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
..+.+++.+... .+.. .....++.+ .+.....+|+++++|++++.+
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~L 169 (274)
T PRK13647 90 DQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYL 169 (274)
T ss_pred hhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCC
Confidence 122233322110 0110 111111110 112223689999999999987
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+. .. ...+.+.|+.++++ +.|||+++|-..
T Consensus 170 D~--------~~----~~~l~~~l~~~~~~-g~tili~tH~~~ 199 (274)
T PRK13647 170 DP--------RG----QETLMEILDRLHNQ-GKTVIVATHDVD 199 (274)
T ss_pred CH--------HH----HHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 64 22 23777888888765 899999999865
No 122
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.01 E-value=2.1e-09 Score=93.74 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=32.3
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 16 ~il~~is~-~i~~G~~~~l~G~nGsGKSTLl~~i~--Gl~~~~~G 57 (214)
T TIGR02673 16 AALHDVSL-HIRKGEFLFLTGPSGAGKTTLLKLLY--GALTPSRG 57 (214)
T ss_pred eeecceeE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 34566555 79999999999999999999999654 45554433
No 123
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.01 E-value=2.9e-09 Score=97.87 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=78.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC-CHHHHHHHHHHcCCC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF-RPQRLLQIADRYGLN----- 184 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~-~~~rl~~~~~~~~~~----- 184 (342)
.|+.+.. -+++|+++.|.|++|||||||+..++ ...++..| .+++++..-. .... +.+..++-
T Consensus 8 ~l~~vs~-~i~~Ge~~~l~G~NGaGKSTLl~~l~--Gl~~p~~G-----~i~~~g~~~~~~~~~---~~~~i~~~~q~~~ 76 (302)
T TIGR01188 8 AVDGVNF-KVREGEVFGFLGPNGAGKTTTIRMLT--TLLRPTSG-----TARVAGYDVVREPRK---VRRSIGIVPQYAS 76 (302)
T ss_pred EEeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCce-----EEEECCEEcccCHHH---HHhhcEEecCCCC
Confidence 4566655 78999999999999999999999654 55555444 4455443210 1111 11112211
Q ss_pred --hh-hhhcceeEee---cCCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccc
Q 019381 185 --GA-DVLENVAYAR---AYNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 185 --~~-~~~~~i~~~~---~~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~ 232 (342)
+. ++.+++.+.. ..+.. ...++++.+ .+.....+|+++++|++++-++
T Consensus 77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 77 VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 10 1222221110 00000 111111111 1112236899999999999876
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
+ ..+ ..+.+.|+.++++ +.+||+++|....
T Consensus 157 ~--------~~~----~~l~~~l~~~~~~-g~tvi~~sH~~~~ 186 (302)
T TIGR01188 157 P--------RTR----RAIWDYIRALKEE-GVTILLTTHYMEE 186 (302)
T ss_pred H--------HHH----HHHHHHHHHHHhC-CCEEEEECCCHHH
Confidence 4 222 3677778887765 8999999998763
No 124
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.01 E-value=1.1e-09 Score=96.62 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=36.6
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++.-++. .. ...+...|++++++++.+||+++|-..
T Consensus 163 ~~p~llllDEPt~~LD~--------~~----~~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 163 GRPDVLFADEPTGNLDR--------QT----GDKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 68999999999987753 22 237778888888877999999998865
No 125
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.01 E-value=6.6e-09 Score=85.52 Aligned_cols=136 Identities=20% Similarity=0.367 Sum_probs=81.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC------------CCCCHHHHHHH-------HH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE------------GTFRPQRLLQI-------AD 179 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e------------~~~~~~rl~~~-------~~ 179 (342)
--..|+++.|.|.+|||||||+. |.+.+..|..| .++++.| ...+...+..+ ++
T Consensus 28 ~A~~GdVisIIGsSGSGKSTfLR--CiN~LE~P~~G-----~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ 100 (256)
T COG4598 28 QANAGDVISIIGSSGSGKSTFLR--CINFLEKPSAG-----SIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQ 100 (256)
T ss_pred ecCCCCEEEEecCCCCchhHHHH--HHHhhcCCCCc-----eEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhh
Confidence 34679999999999999999999 56777766554 5666655 12233333333 33
Q ss_pred HcCCCh-hhhhccee-----EeecCC---HHHHHHHHHHH----------------------HHHhHhcCceEEEEeccc
Q 019381 180 RYGLNG-ADVLENVA-----YARAYN---TDHQSRLLLEA----------------------ASMMVETRFALMIVDSAT 228 (342)
Q Consensus 180 ~~~~~~-~~~~~~i~-----~~~~~~---~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~ 228 (342)
+|++=. -++++|+. +..... .+....++.++ .+......|.++.+|+++
T Consensus 101 ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPT 180 (256)
T COG4598 101 HFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPT 180 (256)
T ss_pred hcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCc
Confidence 343211 12333321 111100 11111222211 122223679999999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.++++. ++++++.++.+|.+ |-|.++++|-..
T Consensus 181 SALDPEl------------VgEVLkv~~~LAeE-grTMv~VTHEM~ 213 (256)
T COG4598 181 SALDPEL------------VGEVLKVMQDLAEE-GRTMVVVTHEMG 213 (256)
T ss_pred ccCCHHH------------HHHHHHHHHHHHHh-CCeEEEEeeehh
Confidence 9887653 67899999999998 667777777654
No 126
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=2.9e-09 Score=94.15 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=79.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHH-HHcCC---
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIA-DRYGL--- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~-~~~~~--- 183 (342)
+.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+.- .+........ +..++
T Consensus 23 ~il~~isl-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~~~~G-----~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q 94 (233)
T PRK11629 23 DVLHNVSF-SIGEGEMMAIVGSSGSGKSTLLHLLG--GLDTPTSG-----DVIFNGQPMSKLSSAAKAELRNQKLGFIYQ 94 (233)
T ss_pred eeEEeeEE-EEcCCcEEEEECCCCCCHHHHHHHHh--cCCCCCce-----EEEECCEEcCcCCHHHHHHHHhccEEEEec
Confidence 34666655 78999999999999999999999765 45554443 445544321 1111111110 11111
Q ss_pred ----Chh-hhhcceeEe---ecCCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEecccc
Q 019381 184 ----NGA-DVLENVAYA---RAYNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 184 ----~~~-~~~~~i~~~---~~~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~ 229 (342)
.+. .+.+++.+. ..... ....+.++.+ .+.....+|+++++|++++
T Consensus 95 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 174 (233)
T PRK11629 95 FHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTG 174 (233)
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 000 122222110 00000 0111111110 1112236899999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
-++. .. ...+.+.|++++++.+.+||+++|-..
T Consensus 175 ~LD~--------~~----~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 175 NLDA--------RN----ADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred CCCH--------HH----HHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 7763 22 236777788887766899999999765
No 127
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.01 E-value=1.7e-09 Score=96.25 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=36.1
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++.-++.. . ...+...|+.++++.+.+||+++|-..
T Consensus 148 ~~p~llllDEPt~~LD~~--------~----~~~l~~~l~~~~~~~g~tii~~sH~~~ 193 (241)
T PRK14250 148 NNPEVLLLDEPTSALDPT--------S----TEIIEELIVKLKNKMNLTVIWITHNME 193 (241)
T ss_pred cCCCEEEEeCCcccCCHH--------H----HHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 689999999999977632 2 236777888887767899999999765
No 128
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.01 E-value=6.9e-10 Score=104.06 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=36.8
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++. ..+ ..+...|+.++++.+.|+|+++|-..
T Consensus 145 ~~p~llLLDEPts~LD~--------~~~----~~l~~~L~~l~~~~g~tii~vTHd~~ 190 (352)
T PRK11144 145 TAPELLLMDEPLASLDL--------PRK----RELLPYLERLAREINIPILYVSHSLD 190 (352)
T ss_pred cCCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 68999999999987653 222 36777888888888999999999764
No 129
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.00 E-value=1.1e-09 Score=91.61 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=71.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC----CCceEEEecCCCCCHHHHHHHHHHcCCChh
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG----EGKAMYIDAEGTFRPQRLLQIADRYGLNGA 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~----~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~ 186 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..|.- ...+.|+.-+..+ ...
T Consensus 16 ~l~~i~l-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~G~i~~~~~~~i~~~~q~~~~--------------~~~ 78 (166)
T cd03223 16 LLKDLSF-EIKPGDRLLITGPSGTGKSSLFRALA--GLWPWGSGRIGMPEGEDLLFLPQRPYL--------------PLG 78 (166)
T ss_pred eeecCeE-EECCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCceEEECCCceEEEECCCCcc--------------ccc
Confidence 4555555 78999999999999999999999764 4555544300 0123333322111 111
Q ss_pred hhhcceeE--eecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCC
Q 019381 187 DVLENVAY--ARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGV 264 (342)
Q Consensus 187 ~~~~~i~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~ 264 (342)
.+.+++.+ ....+.- ..+.+..++++ ..+++++++|++++.++.. .+ ..+...|++ ++.
T Consensus 79 tv~~nl~~~~~~~LS~G-~~~rv~laral--~~~p~~lllDEPt~~LD~~--------~~----~~l~~~l~~----~~~ 139 (166)
T cd03223 79 TLREQLIYPWDDVLSGG-EQQRLAFARLL--LHKPKFVFLDEATSALDEE--------SE----DRLYQLLKE----LGI 139 (166)
T ss_pred cHHHHhhccCCCCCCHH-HHHHHHHHHHH--HcCCCEEEEECCccccCHH--------HH----HHHHHHHHH----hCC
Confidence 23333332 1122222 12222322333 3689999999999977632 11 134444443 368
Q ss_pred EEEEEecccc
Q 019381 265 AVVITNQVVA 274 (342)
Q Consensus 265 ~vi~~~h~~~ 274 (342)
++|+++|-..
T Consensus 140 tiiivsh~~~ 149 (166)
T cd03223 140 TVISVGHRPS 149 (166)
T ss_pred EEEEEeCChh
Confidence 9999988753
No 130
>PRK10908 cell division protein FtsE; Provisional
Probab=99.00 E-value=6e-09 Score=91.44 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=36.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
..|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..| .++++.+
T Consensus 16 ~~l~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~ 64 (222)
T PRK10908 16 QALQGVTF-HMRPGEMAFLTGHSGAGKSTLLKLIC--GIERPSAG-----KIWFSGH 64 (222)
T ss_pred eEEeeeeE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCce-----EEEECCE
Confidence 34566555 78999999999999999999999765 55555443 4555543
No 131
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.00 E-value=3e-09 Score=92.37 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=77.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC-------
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL------- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~------- 183 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+.-... ....+..++
T Consensus 15 ~l~~~~~-~i~~G~~~~i~G~nGsGKSTLl~~l~--Gl~~~~~G-----~i~~~g~~~~~~---~~~~~~i~~~~q~~~~ 83 (208)
T cd03268 15 VLDDISL-HVKKGEIYGFLGPNGAGKTTTMKIIL--GLIKPDSG-----EITFDGKSYQKN---IEALRRIGALIEAPGF 83 (208)
T ss_pred eEeeeEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCcCCCce-----EEEECCCcccch---HHHHhhEEEecCCCcc
Confidence 4555555 68999999999999999999999765 44554433 445554421111 111111111
Q ss_pred Ch-hhhhcceeEee---cCCHHHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCC
Q 019381 184 NG-ADVLENVAYAR---AYNTDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSG 237 (342)
Q Consensus 184 ~~-~~~~~~i~~~~---~~~~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~ 237 (342)
.+ .++.+++.+.. ..+.....+.++.+ .+.....+|+++++|++++-++.
T Consensus 84 ~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~---- 159 (208)
T cd03268 84 YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP---- 159 (208)
T ss_pred CccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH----
Confidence 10 12222221110 00111111111111 11112267999999999997764
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 238 RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 238 ~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.. ...+...|+.+++ .+.+||+++|-..
T Consensus 160 ----~~----~~~l~~~l~~~~~-~~~tii~~tH~~~ 187 (208)
T cd03268 160 ----DG----IKELRELILSLRD-QGITVLISSHLLS 187 (208)
T ss_pred ----HH----HHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence 22 2367777888776 5899999998765
No 132
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.00 E-value=6.1e-09 Score=87.76 Aligned_cols=131 Identities=19% Similarity=0.254 Sum_probs=75.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC-----C-----CCceEEEecCCCCCHHHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG-----G-----EGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~-----~-----~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
.|+.+-. -+++|+++.|.||+|||||||+..++. ..|. . ..++.|+.. .+.++.
T Consensus 10 ~l~~isl-~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~~~~~~~~~~~q---------~~~l~~ 73 (176)
T cd03238 10 NLQNLDV-SIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPKFSRNKLIFIDQ---------LQFLID 73 (176)
T ss_pred eecceEE-EEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccccccccEEEEhH---------HHHHHH
Confidence 3555555 789999999999999999999986531 1110 0 012333211 234555
Q ss_pred cCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 019381 181 YGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLAD 260 (342)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~ 260 (342)
+++.... ++. .....+.-+ .+.+..+.+++...+++++++|+++.-++.. . ...+.+.|+++++
T Consensus 74 ~~L~~~~-~~~--~~~~LSgGq-~qrl~laral~~~~~p~llLlDEPt~~LD~~--------~----~~~l~~~l~~~~~ 137 (176)
T cd03238 74 VGLGYLT-LGQ--KLSTLSGGE-LQRVKLASELFSEPPGTLFILDEPSTGLHQQ--------D----INQLLEVIKGLID 137 (176)
T ss_pred cCCCccc-cCC--CcCcCCHHH-HHHHHHHHHHhhCCCCCEEEEeCCcccCCHH--------H----HHHHHHHHHHHHh
Confidence 5543211 001 111222222 2333333344432239999999999877632 2 2366667777754
Q ss_pred HhCCEEEEEecccc
Q 019381 261 EFGVAVVITNQVVA 274 (342)
Q Consensus 261 ~~~~~vi~~~h~~~ 274 (342)
.+.+||+++|-..
T Consensus 138 -~g~tvIivSH~~~ 150 (176)
T cd03238 138 -LGNTVILIEHNLD 150 (176)
T ss_pred -CCCEEEEEeCCHH
Confidence 6899999999865
No 133
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.00 E-value=7e-09 Score=85.58 Aligned_cols=137 Identities=13% Similarity=0.174 Sum_probs=79.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC---CHH-HHHHHHHHcCCChh-hhhccee
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF---RPQ-RLLQIADRYGLNGA-DVLENVA 193 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~---~~~-rl~~~~~~~~~~~~-~~~~~i~ 193 (342)
-++.|+++.|.||||+|||||+.-+| ....|. .+.++|+.++.. +.+ -+..+++..++-.. ++.+|+-
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIA--GF~~P~-----~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIA--GFETPA-----SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHH--hccCCC-----CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 58899999999999999999999765 333333 347788766321 111 12234443332211 2222332
Q ss_pred EeecCCH-------HHHHHHHH---------HH-------------HHHhHhcCceEEEEeccccccccccCCCcchHHH
Q 019381 194 YARAYNT-------DHQSRLLL---------EA-------------ASMMVETRFALMIVDSATALYRTDFSGRGELSAR 244 (342)
Q Consensus 194 ~~~~~~~-------~~~~~~l~---------~l-------------~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r 244 (342)
+-..... ..+...+. ++ .+......-.++.+|++.+.+++ .-|
T Consensus 94 LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP--------~LR 165 (231)
T COG3840 94 LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDP--------ALR 165 (231)
T ss_pred ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCH--------HHH
Confidence 2111110 01111111 11 11112234568889999887654 333
Q ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 245 QMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 245 ~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
. +++..+..++.|.+.|+++++|...
T Consensus 166 ~----eMl~Lv~~l~~E~~~TllmVTH~~~ 191 (231)
T COG3840 166 A----EMLALVSQLCDERKMTLLMVTHHPE 191 (231)
T ss_pred H----HHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 3 7888889999999999999999876
No 134
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.00 E-value=6.8e-10 Score=104.60 Aligned_cols=145 Identities=16% Similarity=0.246 Sum_probs=82.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCChh
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNGA 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~~ 186 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ +..++..| .++++++.- .++.+ +..+++.+.+.+.
T Consensus 29 ~l~~vsl-~i~~Ge~~~LlGpsGsGKSTLLr~Ia--Gl~~p~~G-----~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ 100 (375)
T PRK09452 29 VISNLDL-TINNGEFLTLLGPSGCGKTTVLRLIA--GFETPDSG-----RIMLDGQDITHVPAENRHVNTVFQSYALFPH 100 (375)
T ss_pred EEeeeEE-EEeCCCEEEEECCCCCcHHHHHHHHh--CCCCCCce-----EEEECCEECCCCCHHHCCEEEEecCcccCCC
Confidence 4555555 78999999999999999999999665 55555443 455554421 11111 0011122222222
Q ss_pred -hhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccC
Q 019381 187 -DVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFS 236 (342)
Q Consensus 187 -~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~ 236 (342)
++.+|+.+... .+.. ...+.++.+ .+.....+|+++++|++.+.++.
T Consensus 101 ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~--- 177 (375)
T PRK09452 101 MTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY--- 177 (375)
T ss_pred CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH---
Confidence 33344332110 0111 111111110 11122367999999999987753
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 237 GRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 237 ~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
..| ..+...|++++++.++|+|+++|-...
T Consensus 178 -----~~r----~~l~~~L~~l~~~~g~tiI~vTHd~~e 207 (375)
T PRK09452 178 -----KLR----KQMQNELKALQRKLGITFVFVTHDQEE 207 (375)
T ss_pred -----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 222 267778888888889999999997553
No 135
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.00 E-value=1.4e-09 Score=97.26 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=80.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC----CCCceEEEecCCCCCH---HHHHHHHHHc-C
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG----GEGKAMYIDAEGTFRP---QRLLQIADRY-G 182 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~----~~~~vl~i~~e~~~~~---~rl~~~~~~~-~ 182 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..|. ....+.|+..+..+.. ..+....... +
T Consensus 19 vl~~vs~-~i~~Ge~~~I~G~NGsGKSTLl~~i~--Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~ 95 (251)
T PRK09544 19 VLSDVSL-ELKPGKILTLLGPNGAGKSTLVRVVL--GLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPG 95 (251)
T ss_pred EEEeEEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccc
Confidence 3454444 68999999999999999999999665 455555441 1123555543322211 1111111000 0
Q ss_pred CChh---hhhcceeE-------eecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHH
Q 019381 183 LNGA---DVLENVAY-------ARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFL 252 (342)
Q Consensus 183 ~~~~---~~~~~i~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~ 252 (342)
...+ .+++.+.+ ....+.-+ .+.+..+.+ ...+|+++++|+++..++. .. ...+.
T Consensus 96 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq-~qrv~lara--l~~~p~lllLDEPt~~LD~--------~~----~~~l~ 160 (251)
T PRK09544 96 TKKEDILPALKRVQAGHLIDAPMQKLSGGE-TQRVLLARA--LLNRPQLLVLDEPTQGVDV--------NG----QVALY 160 (251)
T ss_pred ccHHHHHHHHHHcCChHHHhCChhhCCHHH-HHHHHHHHH--HhcCCCEEEEeCCCcCCCH--------HH----HHHHH
Confidence 1111 11111111 01111111 111222222 2368999999999997763 22 23677
Q ss_pred HHHHHHHHHhCCEEEEEeccccc
Q 019381 253 RSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 253 ~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
+.|+.++++++.+||+++|-...
T Consensus 161 ~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 161 DLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred HHHHHHHHhcCCEEEEEecCHHH
Confidence 78888887778999999998763
No 136
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=2.3e-09 Score=97.41 Aligned_cols=144 Identities=19% Similarity=0.290 Sum_probs=82.4
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCC-----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLN----- 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~----- 184 (342)
..|+.+-. -|.+|+++.|.|++|+|||||+..++ ...++..| .+++++..- .......+.+..++-
T Consensus 21 ~~l~~vsl-~i~~Ge~~~i~G~nGaGKSTLl~~i~--G~~~p~~G-----~i~~~g~~i-~~~~~~~~~~~i~~~~q~~~ 91 (279)
T PRK13635 21 YALKDVSF-SVYEGEWVAIVGHNGSGKSTLAKLLN--GLLLPEAG-----TITVGGMVL-SEETVWDVRRQVGMVFQNPD 91 (279)
T ss_pred cceeeeEE-EEcCCCEEEEECCCCCcHHHHHHHHh--cCCCCCCc-----EEEECCEEC-CcCcHHHHhhheEEEEeCHH
Confidence 35666665 79999999999999999999999654 55555443 455555421 110001111112110
Q ss_pred ----hhhhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 185 ----GADVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 185 ----~~~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
..++.+++.+... .+.. .....+..+ .+.....+|+++++|+++.-+
T Consensus 92 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gL 171 (279)
T PRK13635 92 NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSML 171 (279)
T ss_pred HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 1123334332110 0111 111111110 111223689999999999977
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+. .. ...+...|++++++.++|||+++|-..
T Consensus 172 D~--------~~----~~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 172 DP--------RG----RREVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred CH--------HH----HHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 63 22 237788888888878999999998765
No 137
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=4.9e-09 Score=95.48 Aligned_cols=146 Identities=18% Similarity=0.328 Sum_probs=82.8
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC-CHHHHHHHHHHcCCC---
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF-RPQRLLQIADRYGLN--- 184 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~-~~~rl~~~~~~~~~~--- 184 (342)
...|+.+.. -|++|+++.|.|++|+|||||+..++ ...++..| .++++++... .......+....++-
T Consensus 19 ~~~l~~vs~-~i~~Ge~~~i~G~nGaGKSTLl~~i~--Gl~~p~~G-----~i~i~g~~~~~~~~~~~~~~~~ig~v~q~ 90 (283)
T PRK13636 19 THALKGINI-NIKKGEVTAILGGNGAGKSTLFQNLN--GILKPSSG-----RILFDGKPIDYSRKGLMKLRESVGMVFQD 90 (283)
T ss_pred CeeeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCcc-----EEEECCEECCCCcchHHHHHhhEEEEecC
Confidence 345666665 78999999999999999999999654 55555444 4555554210 111111111222210
Q ss_pred ------hhhhhcceeEee---cCCHHH----HHHHHHHH----------------------HHHhHhcCceEEEEecccc
Q 019381 185 ------GADVLENVAYAR---AYNTDH----QSRLLLEA----------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 185 ------~~~~~~~i~~~~---~~~~~~----~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~ 229 (342)
...+.+++.+.. ..+... ....++.+ .+.....+|+++++|+++.
T Consensus 91 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~ 170 (283)
T PRK13636 91 PDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170 (283)
T ss_pred cchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 112233332210 011111 11111111 1112236899999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.++. ..+ ..+...|+.++++.+.|||+++|-..
T Consensus 171 gLD~--------~~~----~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 171 GLDP--------MGV----SEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred CCCH--------HHH----HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 8763 222 36778888888877999999999876
No 138
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.99 E-value=4.3e-09 Score=98.07 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=33.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+.. -+++|+++.|.||+|+|||||+..++ ...++..|
T Consensus 55 ~~l~~is~-~i~~Gei~gLlGpNGaGKSTLl~~L~--Gl~~p~~G 96 (340)
T PRK13536 55 AVVNGLSF-TVASGECFGLLGPNGAGKSTIARMIL--GMTSPDAG 96 (340)
T ss_pred EEEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHH--cCCCCCce
Confidence 46777666 79999999999999999999999764 55555444
No 139
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.99 E-value=1.1e-09 Score=102.45 Aligned_cols=144 Identities=17% Similarity=0.260 Sum_probs=81.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCChh
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNGA 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~~ 186 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..| .++++++.- ..+.+ +..+.+...+.+.
T Consensus 17 ~l~~isl-~i~~Ge~~~llGpsGsGKSTLLr~Ia--Gl~~p~~G-----~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~ 88 (353)
T PRK10851 17 VLNDISL-DIPSGQMVALLGPSGSGKTTLLRIIA--GLEHQTSG-----HIRFHGTDVSRLHARDRKVGFVFQHYALFRH 88 (353)
T ss_pred EEEEeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----EEEECCEECCCCCHHHCCEEEEecCcccCCC
Confidence 4555555 68999999999999999999999765 55555443 455554321 11110 0011111112111
Q ss_pred -hhhcceeEee-------cCCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccc
Q 019381 187 -DVLENVAYAR-------AYNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 187 -~~~~~i~~~~-------~~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~ 232 (342)
++.+|+.+.. ..+.. ...++++.+ .+.....+|+++++|++++-++
T Consensus 89 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD 168 (353)
T PRK10851 89 MTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168 (353)
T ss_pred CcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 2333332211 00111 111111111 1112236899999999998775
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
. ..+ ..+.+.|+++.+++++|+|+++|-..
T Consensus 169 ~--------~~r----~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 169 A--------QVR----KELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred H--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3 222 26777888888888999999999765
No 140
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.99 E-value=2.3e-09 Score=92.96 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=34.8
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++.++. .. ...+.+.|+.++++ +.+||+++|-..
T Consensus 151 ~~p~llllDEPt~~LD~--------~~----~~~l~~~l~~~~~~-~~tii~~sh~~~ 195 (206)
T TIGR03608 151 KDPPLILADEPTGSLDP--------KN----RDEVLDLLLELNDE-GKTIIIVTHDPE 195 (206)
T ss_pred cCCCEEEEeCCcCCCCH--------HH----HHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 68999999999997753 22 23677778887765 899999998764
No 141
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=3.5e-09 Score=96.31 Aligned_cols=145 Identities=21% Similarity=0.360 Sum_probs=82.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCCh----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNG---- 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~---- 185 (342)
+.|+.+-. -|.+|+++.|.|++|+|||||+..++ ...++..| .++++.+.-..........+..++-+
T Consensus 24 ~vl~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~~~~G-----~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~ 95 (280)
T PRK13633 24 LALDDVNL-EVKKGEFLVILGRNGSGKSTIAKHMN--ALLIPSEG-----KVYVDGLDTSDEENLWDIRNKAGMVFQNPD 95 (280)
T ss_pred ceeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----eEEECCEeccccccHHHHhhheEEEecChh
Confidence 35666665 79999999999999999999999664 55555443 55666543211000011111222111
Q ss_pred -----hhhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 186 -----ADVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 186 -----~~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
..+.+++.+... .... ...++++.+ .+.....+|+++++|++++-+
T Consensus 96 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gL 175 (280)
T PRK13633 96 NQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAML 175 (280)
T ss_pred hhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 012222222100 0111 111111111 111223689999999999977
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+. ..+ ..+...|+.++++.+.+||+++|-..
T Consensus 176 D~--------~~~----~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 176 DP--------SGR----REVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred CH--------HHH----HHHHHHHHHHHHhcCCEEEEEecChH
Confidence 64 222 36777888888777999999998765
No 142
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.98 E-value=9.7e-10 Score=102.92 Aligned_cols=145 Identities=19% Similarity=0.296 Sum_probs=81.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCChh
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNGA 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~~ 186 (342)
.|+.+-. -+++|+++.|.||+|||||||+..++ ...+++.| .++++++.- .++.+ +..+.+.+.+.+.
T Consensus 19 ~l~~vs~-~i~~Ge~~~l~GpsGsGKSTLLr~ia--Gl~~p~~G-----~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~ 90 (353)
T TIGR03265 19 ALKDISL-SVKKGEFVCLLGPSGCGKTTLLRIIA--GLERQTAG-----TIYQGGRDITRLPPQKRDYGIVFQSYALFPN 90 (353)
T ss_pred EEEeeEE-EEcCCCEEEEECCCCCCHHHHHHHHH--CCCCCCce-----EEEECCEECCCCCHHHCCEEEEeCCcccCCC
Confidence 4555554 68899999999999999999999765 55555444 445554321 11110 0001111111111
Q ss_pred -hhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccC
Q 019381 187 -DVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFS 236 (342)
Q Consensus 187 -~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~ 236 (342)
++.+|+.+... .+.. ...+.++.+ .+.....+|+++++|++.+.++.
T Consensus 91 ~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~--- 167 (353)
T TIGR03265 91 LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDA--- 167 (353)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH---
Confidence 22333322100 0000 111111110 11122368999999999987653
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 237 GRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 237 ~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
..| ..+...|+++.++.++|+|+++|-...
T Consensus 168 -----~~r----~~l~~~L~~l~~~~~~tvi~vTHd~~e 197 (353)
T TIGR03265 168 -----RVR----EHLRTEIRQLQRRLGVTTIMVTHDQEE 197 (353)
T ss_pred -----HHH----HHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 222 367778888888889999999997663
No 143
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.98 E-value=2.7e-09 Score=89.38 Aligned_cols=55 Identities=29% Similarity=0.350 Sum_probs=41.1
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.+++-...++++.. -...|+++.|.|++|+||||++..++ .++.|++| .++++.-
T Consensus 10 ~y~~~v~AvrdVSF-~ae~Gei~GlLG~NGAGKTT~LRmia--tlL~P~~G-----~v~idg~ 64 (245)
T COG4555 10 SYGSKVQAVRDVSF-EAEEGEITGLLGENGAGKTTLLRMIA--TLLIPDSG-----KVTIDGV 64 (245)
T ss_pred hccCHHhhhhheeE-EeccceEEEEEcCCCCCchhHHHHHH--HhccCCCc-----eEEEeec
Confidence 44444456777777 78999999999999999999999765 34444444 7777654
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=2.8e-09 Score=96.13 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=36.3
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++. .. ...+...|+.++++.+.+||+++|-..
T Consensus 164 ~~p~lllLDEPt~~LD~--------~~----~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 164 QDSRCLLLDEPTSALDI--------AH----QVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred cCCCEEEEcCCcccCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999999997753 22 236777888888777899999999765
No 145
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.98 E-value=4.2e-09 Score=93.96 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=92.9
Q ss_pred HhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCH--------HHHHHHHHHcC
Q 019381 113 DKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRP--------QRLLQIADRYG 182 (342)
Q Consensus 113 D~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~--------~rl~~~~~~~~ 182 (342)
+.+.. -++.|++++|.|-||||||||+. +.+-+.++..| -+++++++- .+. .++...+++|+
T Consensus 45 ~~~sl-~v~~GeIfViMGLSGSGKSTLvR--~~NrLiept~G-----~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 45 NDASL-DVEEGEIFVIMGLSGSGKSTLVR--LLNRLIEPTRG-----EILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cccee-eecCCeEEEEEecCCCCHHHHHH--HHhccCCCCCc-----eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 44444 68999999999999999999999 46777777655 667776632 122 23334567787
Q ss_pred CChh-hhhcceeEeecC---CHHH----HHHHHHHH----------------------HHHhHhcCceEEEEeccccccc
Q 019381 183 LNGA-DVLENVAYARAY---NTDH----QSRLLLEA----------------------ASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 183 ~~~~-~~~~~i~~~~~~---~~~~----~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~ 232 (342)
+-|. ++++|..|--.. +..+ ..+.++.+ .+.....++++++.|+..+.++
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD 196 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196 (386)
T ss_pred cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC
Confidence 7554 677776653221 1111 11112111 1222346899999999988766
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+-. | .++-..|.++.++++.|||+++|--.
T Consensus 197 PLI--------R----~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 197 PLI--------R----TEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred hHH--------H----HHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 421 2 25566788889999999999999755
No 146
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.98 E-value=3e-09 Score=91.02 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=31.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 7 il~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~i~--G~~~~~~G 47 (190)
T TIGR01166 7 VLKGLNF-AAERGEVLALLGANGAGKSTLLLHLN--GLLRPQSG 47 (190)
T ss_pred eecceeE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCce
Confidence 3555555 78999999999999999999999654 45554433
No 147
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=4e-09 Score=95.75 Aligned_cols=141 Identities=17% Similarity=0.258 Sum_probs=79.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC--CHHHHHHHHHHcCC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF--RPQRLLQIADRYGL----- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~--~~~rl~~~~~~~~~----- 183 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..| .++++...-. +... +....++
T Consensus 19 ~l~~vsl-~i~~Ge~~~i~G~NGsGKSTLl~~l~--Gl~~p~~G-----~i~~~g~~~~~~~~~~---~~~~i~~v~q~~ 87 (277)
T PRK13652 19 ALNNINF-IAPRNSRIAVIGPNGAGKSTLFRHFN--GILKPTSG-----SVLIRGEPITKENIRE---VRKFVGLVFQNP 87 (277)
T ss_pred eeeEeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCce-----EEEECCEECCcCCHHH---HHhheEEEecCc
Confidence 4555555 78999999999999999999999765 45555444 3445443210 1111 1111111
Q ss_pred ----ChhhhhcceeEee---cCCHHH----HHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 184 ----NGADVLENVAYAR---AYNTDH----QSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 184 ----~~~~~~~~i~~~~---~~~~~~----~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
...++.+++.+.. ..+... ..+.++.+ .+.....+|+++|+|+++.-
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~g 167 (277)
T PRK13652 88 DDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167 (277)
T ss_pred ccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 0011222222110 011100 01111110 11222368999999999987
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.. . ...+.+.|+.++++++.|||+++|-..
T Consensus 168 LD~~--------~----~~~l~~~l~~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 168 LDPQ--------G----VKELIDFLNDLPETYGMTVIFSTHQLD 199 (277)
T ss_pred CCHH--------H----HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7542 2 236778888888877999999999865
No 148
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.97 E-value=1.4e-09 Score=94.85 Aligned_cols=46 Identities=9% Similarity=0.188 Sum_probs=36.9
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++.-++. .. ...+.+.|+.++++.+.|||+++|-..
T Consensus 147 ~~p~llllDEPt~~LD~--------~~----~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 147 REPKVFLMDEPLSNLDA--------KL----RVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred cCCCEEEEcCCcccCCH--------HH----HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 68999999999997763 22 237778888888877999999999765
No 149
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.97 E-value=2.6e-09 Score=107.64 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=89.4
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh---
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA--- 186 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~--- 186 (342)
+.|+.+-- .+++|+.++|.|++|||||||++.+. ....|..| .+++|+-+ ........+.+..++-++
T Consensus 487 ~vL~~isL-~I~~Ge~vaIvG~SGsGKSTL~KLL~--gly~p~~G-----~I~~dg~d-l~~i~~~~lR~~ig~V~Q~~~ 557 (709)
T COG2274 487 PVLEDLSL-EIPPGEKVAIVGRSGSGKSTLLKLLL--GLYKPQQG-----RILLDGVD-LNDIDLASLRRQVGYVLQDPF 557 (709)
T ss_pred chhhceeE-EeCCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----eEEECCEe-HHhcCHHHHHhheeEEcccch
Confidence 46676666 89999999999999999999999654 55555544 67777643 222222233344443222
Q ss_pred ----hhhcceeEeecCCH-HHHHHHHHHH---------------------------------HHHhHhcCceEEEEeccc
Q 019381 187 ----DVLENVAYARAYNT-DHQSRLLLEA---------------------------------ASMMVETRFALMIVDSAT 228 (342)
Q Consensus 187 ----~~~~~i~~~~~~~~-~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l~ 228 (342)
++.+|+....+... +++.+.+... .+.....+|+++++|+.+
T Consensus 558 Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT 637 (709)
T COG2274 558 LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637 (709)
T ss_pred hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence 34566655554433 3333222111 122233789999999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.++.+ .+ ..+.+.|.++.. ++|+|+++|-..
T Consensus 638 SaLD~~-------sE-----~~I~~~L~~~~~--~~T~I~IaHRl~ 669 (709)
T COG2274 638 SALDPE-------TE-----AIILQNLLQILQ--GRTVIIIAHRLS 669 (709)
T ss_pred cccCHh-------HH-----HHHHHHHHHHhc--CCeEEEEEccch
Confidence 988753 33 267777777654 689999988654
No 150
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.97 E-value=1.1e-09 Score=96.92 Aligned_cols=41 Identities=29% Similarity=0.382 Sum_probs=31.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 15 ~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~~~~G 55 (236)
T cd03219 15 ALDDVSF-SVRPGEIHGLIGPNGAGKTTLFNLIS--GFLRPTSG 55 (236)
T ss_pred EecCceE-EecCCcEEEEECCCCCCHHHHHHHHc--CCCCCCCc
Confidence 4555555 78999999999999999999999654 55554443
No 151
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=3.3e-09 Score=95.15 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=36.4
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++. ..+ ..+.+.|++++++.+++||+++|-..
T Consensus 170 ~~p~llllDEPt~~LD~--------~~~----~~l~~~L~~~~~~~~~tii~~sH~~~ 215 (255)
T PRK11300 170 TQPEILMLDEPAAGLNP--------KET----KELDELIAELRNEHNVTVLLIEHDMK 215 (255)
T ss_pred cCCCEEEEcCCccCCCH--------HHH----HHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 68999999999997763 222 36777888887777899999999765
No 152
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.97 E-value=8.9e-09 Score=89.71 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=31.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 15 ~l~~~s~-~i~~G~~~~l~G~nGsGKSTLl~~l~--G~~~~~~G 55 (213)
T cd03262 15 VLKGIDL-TVKKGEVVVIIGPSGSGKSTLLRCIN--LLEEPDSG 55 (213)
T ss_pred eecCceE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 4555555 78999999999999999999999765 55554433
No 153
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.96 E-value=1.8e-09 Score=94.18 Aligned_cols=46 Identities=9% Similarity=0.163 Sum_probs=36.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++.++.. . ...+...|+.+.++.+.+||+++|-..
T Consensus 145 ~~p~llllDEPt~~LD~~--------~----~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPL--------L----REEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred cCCCEEEEcCCCccCCHH--------H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 679999999999977632 2 236778888888777899999999865
No 154
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=3.3e-09 Score=96.81 Aligned_cols=145 Identities=17% Similarity=0.293 Sum_probs=82.3
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCC---HHHHHHHHHHcCC---
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFR---PQRLLQIADRYGL--- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~---~~rl~~~~~~~~~--- 183 (342)
+.|+.+.. -|++|+++.|.|++|||||||+..++ ...++..| .++++...-.. ......+....++
T Consensus 21 ~~l~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~L~--Gl~~p~~G-----~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q 92 (286)
T PRK13646 21 QAIHDVNT-EFEQGKYYAIVGQTGSGKSTLIQNIN--ALLKPTTG-----TVTVDDITITHKTKDKYIRPVRKRIGMVFQ 92 (286)
T ss_pred CceeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----EEEECCEECccccccchHHHHHhheEEEec
Confidence 46777766 89999999999999999999999765 55555443 45555432100 0111111111211
Q ss_pred ------ChhhhhcceeEeec---CCHHH----HHHHHHHH-----------------------HHHhHhcCceEEEEecc
Q 019381 184 ------NGADVLENVAYARA---YNTDH----QSRLLLEA-----------------------ASMMVETRFALMIVDSA 227 (342)
Q Consensus 184 ------~~~~~~~~i~~~~~---~~~~~----~~~~l~~l-----------------------~~~~~~~~~~lvviD~l 227 (342)
.+..+.+++.+... .+... ..+++..+ .+.....+|+++++|++
T Consensus 93 ~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEP 172 (286)
T PRK13646 93 FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEP 172 (286)
T ss_pred ChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 11123333322100 01100 11111100 11222368999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.++. .. ...+...|+.+.++.+.|||+++|-..
T Consensus 173 t~~LD~--------~~----~~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 173 TAGLDP--------QS----KRQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred cccCCH--------HH----HHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 997764 22 236777888887777999999999865
No 155
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=9.3e-10 Score=96.46 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=78.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC----------CCCceEEEecCCCC----CH-HHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG----------GEGKAMYIDAEGTF----RP-QRLL 175 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~----------~~~~vl~i~~e~~~----~~-~rl~ 175 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|. ....+.|+.-+..+ +. +.+.
T Consensus 19 il~~vs~-~i~~G~~~~i~G~nGsGKSTLl~~l~--Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 19 ALEDISL-SVEEGEFVALVGPSGCGKSTLLRIIA--GLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred EEeceeE-EEeCCcEEEEECCCCCCHHHHHHHHh--CCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHH
Confidence 4555555 78999999999999999999999765 555544441 01123343322111 11 0111
Q ss_pred HHHHHcCCChh-------hhhcceeEe-------ecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcch
Q 019381 176 QIADRYGLNGA-------DVLENVAYA-------RAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGEL 241 (342)
Q Consensus 176 ~~~~~~~~~~~-------~~~~~i~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~ 241 (342)
......+.... ++++.+.+. ...+.- ..+.+..+.+ ...+|+++++|++++-++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG-~~qrl~la~a--l~~~p~lllLDEPt~~LD~-------- 164 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGG-MRQRVALARA--LAVDPDVLLLDEPFSALDA-------- 164 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHH-HHHHHHHHHH--HHcCCCEEEECCCCCCCCH--------
Confidence 00111111100 111111110 001111 1111111122 2368999999999997764
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 242 SARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 242 ~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 165 ~~~----~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 165 LTR----EQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred HHH----HHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 222 37777888887777899999999765
No 156
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.96 E-value=1.9e-09 Score=93.97 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=35.1
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++. .. ...+.+.|+++++ .+.+||+++|-..
T Consensus 149 ~~p~llllDEPt~~LD~--------~~----~~~l~~~l~~~~~-~~~tvi~~sH~~~ 193 (213)
T cd03235 149 QDPDLLLLDEPFAGVDP--------KT----QEDIYELLRELRR-EGMTILVVTHDLG 193 (213)
T ss_pred cCCCEEEEeCCcccCCH--------HH----HHHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 68999999999997764 22 2367778888876 4899999999765
No 157
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.96 E-value=1.5e-09 Score=94.02 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=31.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 15 ~l~~v~~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G 55 (205)
T cd03226 15 ILDDLSL-DLYAGEIIALTGKNGAGKTTLAKILA--GLIKESSG 55 (205)
T ss_pred eeeeeeE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCce
Confidence 4555554 68999999999999999999999654 55555444
No 158
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=2.2e-09 Score=97.07 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=36.3
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++.-++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 177 ~~p~illLDEPt~~LD~--------~~----~~~l~~~l~~~~~~~g~tiii~tH~~~ 222 (269)
T cd03294 177 VDPDILLMDEAFSALDP--------LI----RREMQDELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred cCCCEEEEcCCCccCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999999997764 22 236777888888777899999999765
No 159
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.96 E-value=9.6e-09 Score=86.66 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=70.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
-+++|+++.|.|++|+|||||+..++ ...++..| .++++... .++.++. .. .
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~~G-----~i~~~g~~-------------i~~~~q~----~~----L 72 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILA--GQLIPNGD-----NDEWDGIT-------------PVYKPQY----ID----L 72 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHH--cCCCCCCc-----EEEECCEE-------------EEEEccc----CC----C
Confidence 58999999999999999999999654 55554433 44454321 0000000 00 1
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.- ..+.+..++++ ..+++++++|+++..++. ..+ ..+...|+.++++.+.+||+++|-..
T Consensus 73 SgG-q~qrv~laral--~~~p~lllLDEPts~LD~--------~~~----~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 73 SGG-ELQRVAIAAAL--LRNATFYLFDEPSAYLDI--------EQR----LNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred CHH-HHHHHHHHHHH--hcCCCEEEEECCcccCCH--------HHH----HHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 221 12222222232 367999999999987753 222 36677777777665589999999765
No 160
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=5.4e-09 Score=96.09 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=33.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+.. -+.+|+++.|.|++|||||||+..++ +..++..|
T Consensus 21 ~~l~~vsl-~i~~Ge~v~iiG~nGsGKSTLl~~L~--Gl~~p~~G 62 (305)
T PRK13651 21 KALDNVSV-EINQGEFIAIIGQTGSGKTTFIEHLN--ALLLPDTG 62 (305)
T ss_pred cceeeeEE-EEeCCCEEEEECCCCCcHHHHHHHHh--CCCCCCCc
Confidence 45676666 79999999999999999999999655 55555444
No 161
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.96 E-value=6e-09 Score=93.61 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=35.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++.. . ...+...|+.++++.+.+||+++|-..
T Consensus 157 ~~p~lllLDEPt~~LD~~--------~----~~~l~~~l~~~~~~~~~tiii~sH~~~ 202 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLA--------H----QHHVLRLARQLAHERGLAVIVVLHDLN 202 (258)
T ss_pred CCCCEEEEeCCcccCCHH--------H----HHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 378999999999977642 2 236777888887566899999999765
No 162
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=1.2e-09 Score=103.18 Aligned_cols=145 Identities=17% Similarity=0.247 Sum_probs=81.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCChh
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNGA 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~~ 186 (342)
.|+.+-. -+.+|+++.|.|+||||||||+..++ ...++..| .++++++.- .++.+ +..+++.+.+.+.
T Consensus 34 ~l~~vsl-~i~~Ge~~~llGpsGsGKSTLLr~Ia--Gl~~p~~G-----~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ 105 (377)
T PRK11607 34 AVDDVSL-TIYKGEIFALLGASGCGKSTLLRMLA--GFEQPTAG-----QIMLDGVDLSHVPPYQRPINMMFQSYALFPH 105 (377)
T ss_pred EEeeeEE-EEcCCCEEEEECCCCCcHHHHHHHHh--CCCCCCce-----EEEECCEECCCCCHHHCCEEEEeCCCccCCC
Confidence 4555555 68999999999999999999999665 55555444 455554421 11110 0001111111111
Q ss_pred -hhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccC
Q 019381 187 -DVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFS 236 (342)
Q Consensus 187 -~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~ 236 (342)
++.+|+.+... .+.. ...++++.+ .+.....+|+++++|++.+-++.
T Consensus 106 ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~--- 182 (377)
T PRK11607 106 MTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDK--- 182 (377)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH---
Confidence 23334332110 0111 111111110 11222368999999999987653
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 237 GRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 237 ~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
..| ..+...|+++.++.++|+|+++|-...
T Consensus 183 -----~~r----~~l~~~l~~l~~~~g~tii~vTHd~~e 212 (377)
T PRK11607 183 -----KLR----DRMQLEVVDILERVGVTCVMVTHDQEE 212 (377)
T ss_pred -----HHH----HHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 222 256667788888889999999997653
No 163
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=5.3e-09 Score=95.47 Aligned_cols=46 Identities=17% Similarity=0.409 Sum_probs=37.0
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++. ..+ ..+...|+.++++.+.|||+++|-..
T Consensus 161 ~~P~llllDEPt~gLD~--------~~~----~~l~~~l~~l~~~~g~tvi~vtHd~~ 206 (287)
T PRK13637 161 MEPKILILDEPTAGLDP--------KGR----DEILNKIKELHKEYNMTIILVSHSME 206 (287)
T ss_pred cCCCEEEEECCccCCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999999998764 222 37778888888877999999999865
No 164
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=2.9e-09 Score=94.12 Aligned_cols=46 Identities=7% Similarity=0.221 Sum_probs=36.4
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++.-++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 146 ~~p~lllLDEP~~gLD~--------~~----~~~~~~~l~~~~~~~~~tiii~sH~~~ 191 (232)
T PRK10771 146 REQPILLLDEPFSALDP--------AL----RQEMLTLVSQVCQERQLTLLMVSHSLE 191 (232)
T ss_pred cCCCEEEEeCCcccCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 68999999999987753 22 236777888888777899999998876
No 165
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.95 E-value=2.4e-09 Score=93.95 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=34.6
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++.-++. ..+ ..+.+.|+.+++ .+.+||+++|-..
T Consensus 149 ~~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~-~~~tiii~sH~~~ 193 (222)
T cd03224 149 SRPKLLLLDEPSEGLAP--------KIV----EEIFEAIRELRD-EGVTILLVEQNAR 193 (222)
T ss_pred cCCCEEEECCCcccCCH--------HHH----HHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 57999999999997764 222 367777877766 5899999999765
No 166
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.95 E-value=5.6e-09 Score=92.28 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=31.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 15 ~l~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~~G 55 (232)
T cd03218 15 VVNGVSL-SVKQGEIVGLLGPNGAGKTTTFYMIV--GLVKPDSG 55 (232)
T ss_pred eecccee-EecCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 4555555 68999999999999999999999664 55554443
No 167
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=5.9e-09 Score=87.69 Aligned_cols=133 Identities=22% Similarity=0.278 Sum_probs=75.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA---- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~---- 186 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..| .++++.+.- .......+.+..++-++
T Consensus 17 ~l~~i~~-~i~~G~~~~l~G~nGsGKstLl~~i~--G~~~~~~G-----~i~~~g~~~-~~~~~~~~~~~i~~~~~~~~~ 87 (171)
T cd03228 17 VLKDVSL-TIKPGEKVAIVGPSGSGKSTLLKLLL--RLYDPTSG-----EILIDGVDL-RDLDLESLRKNIAYVPQDPFL 87 (171)
T ss_pred cccceEE-EEcCCCEEEEECCCCCCHHHHHHHHH--cCCCCCCC-----EEEECCEEh-hhcCHHHHHhhEEEEcCCchh
Confidence 4555555 68999999999999999999999664 45554433 466766531 11000111122222111
Q ss_pred ---hhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhC
Q 019381 187 ---DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 263 (342)
Q Consensus 187 ---~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~ 263 (342)
.+.+++ .+.- ..+.+..+.+ ...+|+++++|+++.-++. ..+ ..+.+.|+++.+ +
T Consensus 88 ~~~t~~e~l-----LS~G-~~~rl~la~a--l~~~p~llllDEP~~gLD~--------~~~----~~l~~~l~~~~~--~ 145 (171)
T cd03228 88 FSGTIRENI-----LSGG-QRQRIAIARA--LLRDPPILILDEATSALDP--------ETE----ALILEALRALAK--G 145 (171)
T ss_pred ccchHHHHh-----hCHH-HHHHHHHHHH--HhcCCCEEEEECCCcCCCH--------HHH----HHHHHHHHHhcC--C
Confidence 111111 1111 1111222222 2368999999999987653 222 366666776643 6
Q ss_pred CEEEEEecccc
Q 019381 264 VAVVITNQVVA 274 (342)
Q Consensus 264 ~~vi~~~h~~~ 274 (342)
.++|+++|-..
T Consensus 146 ~tii~~sh~~~ 156 (171)
T cd03228 146 KTVIVIAHRLS 156 (171)
T ss_pred CEEEEEecCHH
Confidence 89999988765
No 168
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.95 E-value=1.6e-09 Score=102.14 Aligned_cols=46 Identities=9% Similarity=0.222 Sum_probs=36.8
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++.++. ..+ ..+...|++++++.+.|+|+++|-..
T Consensus 150 ~~P~lLLLDEPts~LD~--------~~~----~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDA--------ALR----VQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred cCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 68999999999997763 222 36777888888888999999999765
No 169
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.95 E-value=1.6e-09 Score=97.27 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=36.4
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++. .. ...+...|+.++++.+.+||+++|-..
T Consensus 150 ~~p~lllLDEPt~~LD~--------~~----~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 150 HRPGLLLLDEPLGALDA--------LT----RIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 68999999999987753 22 236777888887777899999999865
No 170
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.95 E-value=3e-09 Score=93.93 Aligned_cols=144 Identities=24% Similarity=0.295 Sum_probs=78.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH-HHH----HHHHcCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR-LLQ----IADRYGL 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r-l~~----~~~~~~~ 183 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..| .++++.+.- .+... .+. +.+....
T Consensus 15 ~l~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (230)
T TIGR03410 15 ILRGVSL-EVPKGEVTCVLGRNGVGKTTLLKTLM--GLLPVKSG-----SIRLDGEDITKLPPHERARAGIAYVPQGREI 86 (230)
T ss_pred Eecceee-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCC-----EEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 4666655 79999999999999999999999654 55554433 445544321 11111 000 0111111
Q ss_pred Chh-hhhcceeEee-c--CCH----HHHHHHHHHH--------------------HHHhHhcCceEEEEecccccccccc
Q 019381 184 NGA-DVLENVAYAR-A--YNT----DHQSRLLLEA--------------------ASMMVETRFALMIVDSATALYRTDF 235 (342)
Q Consensus 184 ~~~-~~~~~i~~~~-~--~~~----~~~~~~l~~l--------------------~~~~~~~~~~lvviD~l~~l~~~~~ 235 (342)
.+. ++.+++.+.. . ... ......+..+ .+.....+++++++|+++.-++.
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~-- 164 (230)
T TIGR03410 87 FPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP-- 164 (230)
T ss_pred cCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH--
Confidence 111 2222221110 0 000 1111111000 11112268999999999987753
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 236 SGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 236 ~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+ ..+.+.|++++++.+.|||+++|-..
T Consensus 165 ------~~~----~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 165 ------SII----KDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred ------HHH----HHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 222 36777788887767899999999865
No 171
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=1.1e-08 Score=89.70 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=36.4
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++.-++.. . ...+.+.|+.++++++.+||+++|-..
T Consensus 148 ~~p~llllDEPt~~LD~~--------~----~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQ--------T----RAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred cCCCEEEEcCCccCCCHH--------H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 689999999999977642 2 236777888888877899999999755
No 172
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=5.6e-09 Score=94.43 Aligned_cols=46 Identities=17% Similarity=0.337 Sum_probs=35.8
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++. .. ...+...|++++++.+.+||+++|-..
T Consensus 159 ~~p~lllLDEPt~~LD~--------~~----~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 159 LNPSVIILDEATSMLDP--------DA----RQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred cCCCEEEEeCCcccCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 68999999999998764 22 236777788887777899999998754
No 173
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.94 E-value=1.9e-08 Score=89.70 Aligned_cols=140 Identities=11% Similarity=0.145 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC---CCceEEEecCCCC-CHHHHHHHHH----HcCCCh---h
Q 019381 118 GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG---EGKAMYIDAEGTF-RPQRLLQIAD----RYGLNG---A 186 (342)
Q Consensus 118 GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~---~~~vl~i~~e~~~-~~~rl~~~~~----~~~~~~---~ 186 (342)
|-+.+|+++.|.|++|||||||+..++ ...++..|.. +..+.|+.-+... ....+.+.+. ...... .
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~--G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 97 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLA--GVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT 97 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHh--CCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence 468899999999999999999999654 5555555521 1244555433211 1111111111 011000 1
Q ss_pred hhhcceeEe-------ecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 019381 187 DVLENVAYA-------RAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLA 259 (342)
Q Consensus 187 ~~~~~i~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la 259 (342)
++++.+.+. ...+.-+ .+.+.. +.....+++++++|++++.++. ..+ ..+...|+.++
T Consensus 98 ~~l~~l~l~~~~~~~~~~LSgGe-~qrv~i--araL~~~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~ 162 (246)
T cd03237 98 EIAKPLQIEQILDREVPELSGGE-LQRVAI--AACLSKDADIYLLDEPSAYLDV--------EQR----LMASKVIRRFA 162 (246)
T ss_pred HHHHHcCCHHHhhCChhhCCHHH-HHHHHH--HHHHhcCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHH
Confidence 122111110 0111111 111222 2222368999999999998764 222 36778888888
Q ss_pred HHhCCEEEEEecccc
Q 019381 260 DEFGVAVVITNQVVA 274 (342)
Q Consensus 260 ~~~~~~vi~~~h~~~ 274 (342)
++.+.+||+++|-..
T Consensus 163 ~~~~~tiiivsHd~~ 177 (246)
T cd03237 163 ENNEKTAFVVEHDII 177 (246)
T ss_pred HhcCCEEEEEeCCHH
Confidence 888999999999865
No 174
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=3.6e-09 Score=96.35 Aligned_cols=146 Identities=18% Similarity=0.313 Sum_probs=81.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC-------
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL------- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~------- 183 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| . .+.++++++.- ............++
T Consensus 22 ~l~~v~l-~i~~Ge~~~I~G~nGaGKSTLl~~l~--G~~~p~~g-~-~G~i~i~g~~~-~~~~~~~~~~~ig~v~q~~~~ 95 (282)
T PRK13640 22 ALNDISF-SIPRGSWTALIGHNGSGKSTISKLIN--GLLLPDDN-P-NSKITVDGITL-TAKTVWDIREKVGIVFQNPDN 95 (282)
T ss_pred ceeeEEE-EEcCCCEEEEECCCCCcHHHHHHHHh--cccCCCCC-C-CcEEEECCEEC-CcCCHHHHHhheEEEEECHHH
Confidence 4566555 79999999999999999999999765 44444331 0 12455655421 11001111111111
Q ss_pred --ChhhhhcceeEeec---CCHHH----HHHHHHHH----------------------HHHhHhcCceEEEEeccccccc
Q 019381 184 --NGADVLENVAYARA---YNTDH----QSRLLLEA----------------------ASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 184 --~~~~~~~~i~~~~~---~~~~~----~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~ 232 (342)
...++.+++.+... .+... ...+++.+ .+.....+|+++++|+++.-++
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD 175 (282)
T PRK13640 96 QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175 (282)
T ss_pred hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 01123333322110 11111 11111111 1112236899999999999776
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
. ..+ ..+...|+.++++.+.+||+++|-..
T Consensus 176 ~--------~~~----~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 176 P--------AGK----EQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred H--------HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 3 222 36777888888777999999998765
No 175
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.94 E-value=4.4e-09 Score=95.13 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=36.1
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++.-++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 160 ~~p~lllLDEPt~~LD~--------~~----~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDP--------IT----MGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred cCCCEEEEcCCCccCCH--------HH----HHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 67999999999987763 22 237777888888777899999999754
No 176
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=1.6e-09 Score=93.01 Aligned_cols=137 Identities=21% Similarity=0.278 Sum_probs=76.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA---- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~---- 186 (342)
.|+.+.. -+.+|+++.|.|++|+|||||+..++-....++.. +.++++.+.- . . ......++-++
T Consensus 22 ~l~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~-----G~i~~~g~~~-~-~---~~~~~i~~~~q~~~~ 90 (192)
T cd03232 22 LLNNISG-YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT-----GEILINGRPL-D-K---NFQRSTGYVEQQDVH 90 (192)
T ss_pred eEEccEE-EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcc-----eEEEECCEeh-H-H---HhhhceEEecccCcc
Confidence 4555555 78999999999999999999999765321112322 3566665531 1 1 11111221111
Q ss_pred ----hhhcceeEee---cCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 019381 187 ----DVLENVAYAR---AYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLA 259 (342)
Q Consensus 187 ----~~~~~i~~~~---~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la 259 (342)
.+.+++.+.. ..+.-+ .+.+..+.+ ...+++++++|++++-++. ..+ ..+...|++++
T Consensus 91 ~~~~tv~~~l~~~~~~~~LSgGe-~qrv~la~a--l~~~p~vlllDEP~~~LD~--------~~~----~~l~~~l~~~~ 155 (192)
T cd03232 91 SPNLTVREALRFSALLRGLSVEQ-RKRLTIGVE--LAAKPSILFLDEPTSGLDS--------QAA----YNIVRFLKKLA 155 (192)
T ss_pred ccCCcHHHHHHHHHHHhcCCHHH-hHHHHHHHH--HhcCCcEEEEeCCCcCCCH--------HHH----HHHHHHHHHHH
Confidence 1222222110 111111 111111122 2367999999999997753 222 36677777776
Q ss_pred HHhCCEEEEEecccc
Q 019381 260 DEFGVAVVITNQVVA 274 (342)
Q Consensus 260 ~~~~~~vi~~~h~~~ 274 (342)
+ .+.+||+++|-..
T Consensus 156 ~-~~~tiiivtH~~~ 169 (192)
T cd03232 156 D-SGQAILCTIHQPS 169 (192)
T ss_pred H-cCCEEEEEEcCCh
Confidence 5 4899999998754
No 177
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=3e-09 Score=94.50 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=36.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++.++. .. ...+...|+.++++.+.+||+++|-..
T Consensus 153 ~~p~llllDEP~~~LD~--------~~----~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 153 VEPKVLLLDEPFGALDA--------KV----RKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred cCCCEEEEcCCcccCCH--------HH----HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 67999999999997764 22 236777888888777899999999765
No 178
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.94 E-value=8.7e-09 Score=89.47 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=76.9
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH----HHcCCCh-
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA----DRYGLNG- 185 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~----~~~~~~~- 185 (342)
.|+.+.. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+...... .+... +.....+
T Consensus 17 ~l~~is~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 87 (207)
T PRK13539 17 LFSGLSF-TLAAGEALVLTGPNGSGKTTLLRLIA--GLLPPAAG-----TIKLDGGDIDDPD-VAEACHYLGHRNAMKPA 87 (207)
T ss_pred EEeceEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----eEEECCEeCcchh-hHhhcEEecCCCcCCCC
Confidence 4566555 78999999999999999999999654 45444433 3445443210000 11000 0000000
Q ss_pred hhhhcceeEee---cCCHHHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCCCcc
Q 019381 186 ADVLENVAYAR---AYNTDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSGRGE 240 (342)
Q Consensus 186 ~~~~~~i~~~~---~~~~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~~~~ 240 (342)
..+.+++.+.. ........+.++.+ .+.....+++++++|+++.-++.
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~------- 160 (207)
T PRK13539 88 LTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA------- 160 (207)
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-------
Confidence 01222221100 00111111111111 11122267999999999987653
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 241 ~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
.. ...+.+.|+.++++ +.+||+++|-...
T Consensus 161 -~~----~~~l~~~l~~~~~~-~~tiii~sH~~~~ 189 (207)
T PRK13539 161 -AA----VALFAELIRAHLAQ-GGIVIAATHIPLG 189 (207)
T ss_pred -HH----HHHHHHHHHHHHHC-CCEEEEEeCCchh
Confidence 22 23677778877665 8999999998763
No 179
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.94 E-value=2.4e-09 Score=92.72 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=31.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+.. -+++|+++.|.|++|+|||||+..++ ...++..|
T Consensus 16 ~l~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~l~--G~~~p~~G 56 (204)
T PRK13538 16 LFSGLSF-TLNAGELVQIEGPNGAGKTSLLRILA--GLARPDAG 56 (204)
T ss_pred EEecceE-EECCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 4555555 79999999999999999999999654 55555443
No 180
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.94 E-value=2.5e-09 Score=93.57 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=32.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 20 il~~~sl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~~~~G 60 (218)
T cd03266 20 AVDGVSF-TVKPGEVTGLLGPNGAGKTTTLRMLA--GLLEPDAG 60 (218)
T ss_pred eecceEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCcCCCCc
Confidence 4555555 78999999999999999999999664 55555443
No 181
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.93 E-value=2.2e-09 Score=90.92 Aligned_cols=135 Identities=14% Similarity=0.193 Sum_probs=77.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA---- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~---- 186 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..| .++++... .... ...+....++-++
T Consensus 17 ~l~~i~~-~i~~Ge~~~i~G~nGsGKStLl~~l~--G~~~~~~G-----~i~~~g~~-~~~~-~~~~~~~i~~~~q~~~~ 86 (178)
T cd03247 17 VLKNLSL-ELKQGEKIALLGRSGSGKSTLLQLLT--GDLKPQQG-----EITLDGVP-VSDL-EKALSSLISVLNQRPYL 86 (178)
T ss_pred ceEEEEE-EEcCCCEEEEECCCCCCHHHHHHHHh--ccCCCCCC-----EEEECCEE-HHHH-HHHHHhhEEEEccCCee
Confidence 4555544 79999999999999999999999765 45554433 56666642 1111 1111122222111
Q ss_pred ---hhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhC
Q 019381 187 ---DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 263 (342)
Q Consensus 187 ---~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~ 263 (342)
.+.+++ ....+.-+ .+.+..++++ ..+|+++++|+++.-++. ..+ ..+.+.|++++ + +
T Consensus 87 ~~~tv~~~i--~~~LS~G~-~qrv~laral--~~~p~~lllDEP~~~LD~--------~~~----~~l~~~l~~~~-~-~ 147 (178)
T cd03247 87 FDTTLRNNL--GRRFSGGE-RQRLALARIL--LQDAPIVLLDEPTVGLDP--------ITE----RQLLSLIFEVL-K-D 147 (178)
T ss_pred ecccHHHhh--cccCCHHH-HHHHHHHHHH--hcCCCEEEEECCcccCCH--------HHH----HHHHHHHHHHc-C-C
Confidence 122222 11111111 1222222222 378999999999987653 221 26667777764 3 7
Q ss_pred CEEEEEecccc
Q 019381 264 VAVVITNQVVA 274 (342)
Q Consensus 264 ~~vi~~~h~~~ 274 (342)
.+||+++|-..
T Consensus 148 ~tii~~sh~~~ 158 (178)
T cd03247 148 KTLIWITHHLT 158 (178)
T ss_pred CEEEEEecCHH
Confidence 89999998765
No 182
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=7.3e-09 Score=86.51 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=80.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHc----CC-
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRY----GL- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~----~~- 183 (342)
.||.+.- -+|+|.++.|.||+|+|||||+..++ -+.+.+. +.++|++-.- .+...+.+.+.-+ ..
T Consensus 16 vl~~isl-~i~~g~iTs~IGPNGAGKSTLLS~~s--RL~~~d~-----G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 16 VLDDVSL-DIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDS-----GEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred eecccee-eecCCceeEEECCCCccHHHHHHHHH--HhccccC-----ceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 3566665 79999999999999999999998654 3444433 4888876421 2233322221111 00
Q ss_pred ---Chhhh--hcceeEeecCCH----HHHHHH-------------HHHH---------HHHhHhcCceEEEEeccccccc
Q 019381 184 ---NGADV--LENVAYARAYNT----DHQSRL-------------LLEA---------ASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 184 ---~~~~~--~~~i~~~~~~~~----~~~~~~-------------l~~l---------~~~~~~~~~~lvviD~l~~l~~ 232 (342)
...++ +.++-+.+..-. ..+.+. ++++ .+++...+.+.|++|++-..++
T Consensus 88 ~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLD 167 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167 (252)
T ss_pred heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccc
Confidence 01111 011111111000 011111 1111 1222235689999999876543
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
. .+ -.+++..|+++|+++|.||+++-|--
T Consensus 168 m--------kH----sv~iMk~Lrrla~el~KtiviVlHDI 196 (252)
T COG4604 168 M--------KH----SVQIMKILRRLADELGKTIVVVLHDI 196 (252)
T ss_pred h--------HH----HHHHHHHHHHHHHHhCCeEEEEEecc
Confidence 2 22 34899999999999999999987754
No 183
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.93 E-value=8.3e-09 Score=89.15 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=75.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC-------
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL------- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~------- 183 (342)
.|+.+.. -+++|+++.|.|++|+|||||+..++ ...++..| .++++.+..... . ..+.+..++
T Consensus 15 ~l~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~~~~~~-~-~~~~~~i~~~~q~~~~ 84 (201)
T cd03231 15 LFSGLSF-TLAAGEALQVTGPNGSGKTTLLRILA--GLSPPLAG-----RVLLNGGPLDFQ-R-DSIARGLLYLGHAPGI 84 (201)
T ss_pred eeccceE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----EEEECCEecccc-c-HHhhhheEEecccccc
Confidence 4555555 68999999999999999999999654 45554433 344444321000 0 011111111
Q ss_pred Ch-hhhhcceeEeec-CCHHHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCCCc
Q 019381 184 NG-ADVLENVAYARA-YNTDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSGRG 239 (342)
Q Consensus 184 ~~-~~~~~~i~~~~~-~~~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~~~ 239 (342)
.+ ..+.+++.+... .......+.++.+ .+.....+++++++|+++..++.
T Consensus 85 ~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~------ 158 (201)
T cd03231 85 KTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK------ 158 (201)
T ss_pred CCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH------
Confidence 00 112222221110 0111111111111 11222368999999999997763
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 240 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 240 ~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+ ..+...|+.++++ +.++|+++|-..
T Consensus 159 --~~~----~~l~~~l~~~~~~-g~tiii~sH~~~ 186 (201)
T cd03231 159 --AGV----ARFAEAMAGHCAR-GGMVVLTTHQDL 186 (201)
T ss_pred --HHH----HHHHHHHHHHHhC-CCEEEEEecCch
Confidence 222 3667777776654 889999999654
No 184
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=1.8e-09 Score=93.91 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=31.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 15 ~l~~v~~-~i~~G~~~~i~G~nGsGKSTLl~~l~--G~~~~~~G 55 (210)
T cd03269 15 ALDDISF-SVEKGEIFGLLGPNGAGKTTTIRMIL--GIILPDSG 55 (210)
T ss_pred EEeeeEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCce
Confidence 3444444 68999999999999999999999765 55555444
No 185
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.93 E-value=7.5e-09 Score=87.99 Aligned_cols=138 Identities=22% Similarity=0.304 Sum_probs=77.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCCChh--
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGLNGA-- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~-- 186 (342)
.|+.+.. -+++|+++.|.|++|+|||||+..++ ...++..| .++++.+.- ..... ...+..++-++
T Consensus 15 ~l~~vs~-~i~~G~~~~i~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~~~~~~~~~~--~~~~~i~~~~q~~ 84 (182)
T cd03215 15 AVRDVSF-EVRAGEIVGIAGLVGNGQTELAEALF--GLRPPASG-----EITLDGKPVTRRSPRD--AIRAGIAYVPEDR 84 (182)
T ss_pred eecceEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----eEEECCEECCccCHHH--HHhCCeEEecCCc
Confidence 4555555 78999999999999999999999654 55554433 566665421 11111 11111111111
Q ss_pred ---------hhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHH
Q 019381 187 ---------DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQK 257 (342)
Q Consensus 187 ---------~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~ 257 (342)
.+.+++.+....+.-+ .+.+.. +.....+++++++|++++-++. ..+ ..+.+.|+.
T Consensus 85 ~~~~~~~~~t~~e~l~~~~~LS~G~-~qrl~l--a~al~~~p~llllDEP~~~LD~--------~~~----~~l~~~l~~ 149 (182)
T cd03215 85 KREGLVLDLSVAENIALSSLLSGGN-QQKVVL--ARWLARDPRVLILDEPTRGVDV--------GAK----AEIYRLIRE 149 (182)
T ss_pred ccCcccCCCcHHHHHHHHhhcCHHH-HHHHHH--HHHHccCCCEEEECCCCcCCCH--------HHH----HHHHHHHHH
Confidence 1112221111011111 111111 1222368999999999997764 222 266677777
Q ss_pred HHHHhCCEEEEEecccc
Q 019381 258 LADEFGVAVVITNQVVA 274 (342)
Q Consensus 258 la~~~~~~vi~~~h~~~ 274 (342)
++++ +.++|+++|-..
T Consensus 150 ~~~~-~~tiii~sh~~~ 165 (182)
T cd03215 150 LADA-GKAVLLISSELD 165 (182)
T ss_pred HHHC-CCEEEEEeCCHH
Confidence 7654 889999998754
No 186
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.93 E-value=5.9e-09 Score=94.06 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=36.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++.-++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 160 ~~p~llllDEPt~gLD~--------~~----~~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 160 QETAIMLLDEPTTWLDI--------SH----QIDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred cCCCEEEEeCccccCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999999987653 22 236777888888777899999998765
No 187
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.93 E-value=1.8e-09 Score=101.29 Aligned_cols=145 Identities=17% Similarity=0.265 Sum_probs=81.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCC--CCCCCceEEEecCCC--CCHHH--HHHHHHHcCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ--GGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLN 184 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~--g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~ 184 (342)
.|+.+-. -+++|+++.|.||+|||||||+..++ ...++.. | .++++++.- .++.+ +..+++.+.+.
T Consensus 20 ~l~~vsl-~i~~Ge~~~llGpsGsGKSTLLr~ia--Gl~~p~~~~G-----~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~ 91 (362)
T TIGR03258 20 VLDDLSL-EIEAGELLALIGKSGCGKTTLLRAIA--GFVKAAGLTG-----RIAIADRDLTHAPPHKRGLALLFQNYALF 91 (362)
T ss_pred EEeeeEE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCCCE-----EEEECCEECCCCCHHHCCEEEEECCcccC
Confidence 4566555 68999999999999999999999765 5555544 3 455554321 11110 00011111111
Q ss_pred hh-hhhcceeEee---cCCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccc
Q 019381 185 GA-DVLENVAYAR---AYNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTD 234 (342)
Q Consensus 185 ~~-~~~~~i~~~~---~~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~ 234 (342)
+. ++.+|+.+.. ..+.. ...+.++.+ .+.....+|+++++|++++-++.
T Consensus 92 p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~- 170 (362)
T TIGR03258 92 PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDA- 170 (362)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH-
Confidence 11 2223332210 00000 011111110 11222368999999999987653
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHh-CCEEEEEeccccc
Q 019381 235 FSGRGELSARQMHLAKFLRSLQKLADEF-GVAVVITNQVVAQ 275 (342)
Q Consensus 235 ~~~~~~~~~r~~~l~~i~~~Lk~la~~~-~~~vi~~~h~~~~ 275 (342)
..| .++...|+++.+++ ++|+|+++|-...
T Consensus 171 -------~~r----~~l~~~l~~l~~~~~g~til~vTHd~~e 201 (362)
T TIGR03258 171 -------NIR----ANMREEIAALHEELPELTILCVTHDQDD 201 (362)
T ss_pred -------HHH----HHHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 222 36777888888887 8999999997653
No 188
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.93 E-value=4e-09 Score=104.57 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=82.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCC------
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLN------ 184 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~------ 184 (342)
.|+.+.- -+++|+.++|+|++|||||||+..++ ...++..| .+++++.. .... ...+.+..++-
T Consensus 350 vL~~isl-~i~~G~~vaIvG~SGsGKSTLl~lL~--g~~~p~~G-----~I~i~g~~-i~~~-~~~lr~~i~~V~Q~~~l 419 (529)
T TIGR02868 350 VLDGVSL-DLPPGERVAILGPSGSGKSTLLMLLT--GLLDPLQG-----EVTLDGVS-VSSL-QDELRRRISVFAQDAHL 419 (529)
T ss_pred eeecceE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----EEEECCEE-hhhH-HHHHHhheEEEccCccc
Confidence 4555555 78999999999999999999999654 45554443 56676543 2222 23333333321
Q ss_pred -hhhhhcceeEeec-CCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEecccc
Q 019381 185 -GADVLENVAYARA-YNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 185 -~~~~~~~i~~~~~-~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l~~ 229 (342)
..++.+|+.+..+ .+.+++.+.++.+ .+...-.+++++|+|++++
T Consensus 420 F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TS 499 (529)
T TIGR02868 420 FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTE 499 (529)
T ss_pred ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 1245566655432 2333333322211 1111226899999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~ 272 (342)
-++.+ .+ ..+.+.|+.+. .+.|+|+++|-
T Consensus 500 aLD~~-------te-----~~I~~~l~~~~--~~~TvIiItHr 528 (529)
T TIGR02868 500 HLDAG-------TE-----SELLEDLLAAL--SGKTVVVITHH 528 (529)
T ss_pred cCCHH-------HH-----HHHHHHHHHhc--CCCEEEEEecC
Confidence 87642 22 25555665442 47899999983
No 189
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=4.9e-09 Score=95.18 Aligned_cols=143 Identities=18% Similarity=0.342 Sum_probs=80.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC---C---
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL---N--- 184 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~---~--- 184 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..| .++++++.. .......+....++ +
T Consensus 22 ~l~~v~l-~i~~Ge~~~I~G~nGsGKSTLl~~l~--Gl~~~~~G-----~i~~~g~~i-~~~~~~~~~~~i~~v~q~~~~ 92 (277)
T PRK13642 22 QLNGVSF-SITKGEWVSIIGQNGSGKSTTARLID--GLFEEFEG-----KVKIDGELL-TAENVWNLRRKIGMVFQNPDN 92 (277)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCcHHHHHHHHh--cCCCCCCC-----EEEECCEEC-CcCCHHHHhcceEEEEECHHH
Confidence 5666655 78999999999999999999999654 55555443 455554421 11001111111111 0
Q ss_pred ---hhhhhcceeEee---cCCHHHH----HHHHHHH----------------------HHHhHhcCceEEEEeccccccc
Q 019381 185 ---GADVLENVAYAR---AYNTDHQ----SRLLLEA----------------------ASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 185 ---~~~~~~~i~~~~---~~~~~~~----~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~ 232 (342)
...+.+++.+.. ....... ...++.+ .+.....+|+++++|+++.-++
T Consensus 93 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD 172 (277)
T PRK13642 93 QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172 (277)
T ss_pred hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 012223332210 0111111 1111110 1112236799999999998776
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
. .. ...+...|+.++++++.|||+++|-..
T Consensus 173 ~--------~~----~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 173 P--------TG----RQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred H--------HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4 22 237778888888878999999998765
No 190
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.93 E-value=3.1e-09 Score=100.88 Aligned_cols=144 Identities=18% Similarity=0.215 Sum_probs=80.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCCh----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNG---- 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~---- 185 (342)
..|+.+-. -+++|+++.|.||+|+|||||+..++ ...++..| .++++.+.... ...+++.+..++-+
T Consensus 17 ~vL~~vs~-~i~~Geiv~liGpNGaGKSTLLk~La--Gll~p~sG-----~I~l~G~~i~~-~~~~~~~~~ig~v~q~~~ 87 (402)
T PRK09536 17 TVLDGVDL-SVREGSLVGLVGPNGAGKTTLLRAIN--GTLTPTAG-----TVLVAGDDVEA-LSARAASRRVASVPQDTS 87 (402)
T ss_pred EEEEeeEE-EECCCCEEEEECCCCchHHHHHHHHh--cCCCCCCc-----EEEECCEEcCc-CCHHHHhcceEEEccCCC
Confidence 34565555 78999999999999999999999764 55555443 45555542111 00111222222111
Q ss_pred ----hhhhcceeEee--------cCCH---HHHHHHHHHH----------------------HHHhHhcCceEEEEeccc
Q 019381 186 ----ADVLENVAYAR--------AYNT---DHQSRLLLEA----------------------ASMMVETRFALMIVDSAT 228 (342)
Q Consensus 186 ----~~~~~~i~~~~--------~~~~---~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~ 228 (342)
-.+.+++.+.+ .... ....+.++.+ .+.....+|+++++|+++
T Consensus 88 l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt 167 (402)
T PRK09536 88 LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPT 167 (402)
T ss_pred CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 01222222111 0011 1111222111 112223789999999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
..++. ..+ .+++..|+++++ .+.|||+++|-...
T Consensus 168 sgLD~--------~~~----~~l~~lL~~l~~-~g~TIIivsHdl~~ 201 (402)
T PRK09536 168 ASLDI--------NHQ----VRTLELVRRLVD-DGKTAVAAIHDLDL 201 (402)
T ss_pred ccCCH--------HHH----HHHHHHHHHHHh-cCCEEEEEECCHHH
Confidence 98764 222 367778888876 48999999997653
No 191
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.93 E-value=5.7e-09 Score=91.50 Aligned_cols=144 Identities=21% Similarity=0.222 Sum_probs=79.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCCCh---
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGLNG--- 185 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~--- 185 (342)
.|+.+.. -+++|+++.|.|++|+|||||+..++ ...++..| .++++...- .+......+.+..++-+
T Consensus 20 il~~vs~-~i~~G~~~~I~G~nGsGKStLl~~l~--G~~~~~~G-----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (220)
T TIGR02982 20 VLFDINL-EINPGEIVILTGPSGSGKTTLLTLIG--GLRSVQEG-----SLKVLGQELYGASEKELVQLRRNIGYIFQAH 91 (220)
T ss_pred EEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCe-----EEEECCEEhHhcCHhHHHHHHhheEEEcCCh
Confidence 4555555 68999999999999999999999765 45554433 455554321 11111111111111100
Q ss_pred -----hhhhcceeEee----cCCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 186 -----ADVLENVAYAR----AYNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 186 -----~~~~~~i~~~~----~~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
-++.+++.+.. ..... ...+.++.+ .+.....+|+++++|+++..
T Consensus 92 ~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~ 171 (220)
T TIGR02982 92 NLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAA 171 (220)
T ss_pred hhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 01112221110 00111 111111111 11122367999999999998
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.. .+ ..+...|+.++++.+.+||+++|-..
T Consensus 172 LD~~--------~~----~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 172 LDSK--------SG----RDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred CCHH--------HH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 7642 22 37778888888777899999998754
No 192
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.93 E-value=6.9e-09 Score=99.29 Aligned_cols=141 Identities=24% Similarity=0.376 Sum_probs=88.0
Q ss_pred cCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC-C-CHHHHHHHHHHcC--
Q 019381 107 SGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT-F-RPQRLLQIADRYG-- 182 (342)
Q Consensus 107 tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~-~-~~~rl~~~~~~~~-- 182 (342)
.|+..||.+-. -+.+|++..|.|.+|+|||||++-+ +...+++.| .++++++.- + ++. -++..|
T Consensus 19 ggV~AL~~v~l-~v~~GEV~aL~GeNGAGKSTLmKiL--sGv~~p~~G-----~I~~~G~~~~~~sp~----~A~~~GI~ 86 (500)
T COG1129 19 GGVKALDGVSL-TVRPGEVHALLGENGAGKSTLMKIL--SGVYPPDSG-----EILIDGKPVAFSSPR----DALAAGIA 86 (500)
T ss_pred CCceeecccee-EEeCceEEEEecCCCCCHHHHHHHH--hCcccCCCc-----eEEECCEEccCCCHH----HHHhCCcE
Confidence 56678888887 8999999999999999999999954 466666554 788886632 1 121 122222
Q ss_pred -------CChh-hhhcceeEeecCCH-------HH----H------------------------HHHHHHHHHHhHhcCc
Q 019381 183 -------LNGA-DVLENVAYARAYNT-------DH----Q------------------------SRLLLEAASMMVETRF 219 (342)
Q Consensus 183 -------~~~~-~~~~~i~~~~~~~~-------~~----~------------------------~~~l~~l~~~~~~~~~ 219 (342)
+-|+ ++.+|+++-+.... .. . .++++.++++ ..+.
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl--~~~a 164 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARAL--SFDA 164 (500)
T ss_pred EEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHH--hcCC
Confidence 2222 34455544333211 00 0 1111111221 2578
Q ss_pred eEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 220 ALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 220 ~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++||+|++|+.+.. . +...+++.++++.. .|++||+++|--.
T Consensus 165 rllIlDEPTaaLt~--------~----E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~ 206 (500)
T COG1129 165 RVLILDEPTAALTV--------K----ETERLFDLIRRLKA-QGVAIIYISHRLD 206 (500)
T ss_pred CEEEEcCCcccCCH--------H----HHHHHHHHHHHHHh-CCCEEEEEcCcHH
Confidence 99999999997653 1 13466666776654 5999999999654
No 193
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.92 E-value=6.8e-09 Score=95.49 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=32.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..|
T Consensus 19 ~l~~vsl-~i~~Ge~~~l~G~NGaGKSTLl~~l~--Gl~~p~~G 59 (303)
T TIGR01288 19 VVNDLSF-TIARGECFGLLGPNGAGKSTIARMLL--GMISPDRG 59 (303)
T ss_pred EEcceeE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCce
Confidence 4666655 79999999999999999999999764 45554443
No 194
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=5.6e-09 Score=94.64 Aligned_cols=143 Identities=22% Similarity=0.270 Sum_probs=78.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC-------
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL------- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~------- 183 (342)
.|+.+-. -|++|+++.|.|++|+|||||+..++ ...++..| .++++...-........+....++
T Consensus 17 ~l~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G-----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (274)
T PRK13644 17 ALENINL-VIKKGEYIGIIGKNGSGKSTLALHLN--GLLRPQKG-----KVLVSGIDTGDFSKLQGIRKLVGIVFQNPET 88 (274)
T ss_pred eeeeeEE-EEeCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----eEEECCEECCccccHHHHHhheEEEEEChhh
Confidence 4566555 79999999999999999999999765 45554433 455554321100000111111111
Q ss_pred --ChhhhhcceeEeec---CCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccc
Q 019381 184 --NGADVLENVAYARA---YNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 184 --~~~~~~~~i~~~~~---~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~ 232 (342)
...++.+++.+... .+.. ...+.++.+ .+.....+|+++++|+++.-++
T Consensus 89 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD 168 (274)
T PRK13644 89 QFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLD 168 (274)
T ss_pred hcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 11122333322110 0111 111111111 1112236899999999999765
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
. ..+ ..+.+.|+.+++ .+.|||+++|-..
T Consensus 169 ~--------~~~----~~l~~~l~~l~~-~g~til~~tH~~~ 197 (274)
T PRK13644 169 P--------DSG----IAVLERIKKLHE-KGKTIVYITHNLE 197 (274)
T ss_pred H--------HHH----HHHHHHHHHHHh-CCCEEEEEecCHH
Confidence 3 222 267777777765 4899999998865
No 195
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.92 E-value=1.1e-08 Score=91.03 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=31.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..|
T Consensus 18 ~l~~~sl-~i~~Ge~~~l~G~nGsGKSTLl~~l~--G~~~~~~G 58 (241)
T PRK10895 18 VVEDVSL-TVNSGEIVGLLGPNGAGKTTTFYMVV--GIVPRDAG 58 (241)
T ss_pred EEeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 4555544 78999999999999999999999665 45554433
No 196
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.92 E-value=2.4e-09 Score=92.01 Aligned_cols=136 Identities=18% Similarity=0.254 Sum_probs=77.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHccc--CCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh-
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQL--PLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA- 186 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~--~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~- 186 (342)
+.|+.+-. -+.+|+++.|.|++|+|||||+..++ ... ++..| .++++.+.- ... ......++-++
T Consensus 23 ~~l~~~~~-~i~~Ge~~~l~G~nGsGKStLl~~i~--Gl~~~~~~~G-----~i~~~g~~~-~~~---~~~~~i~~~~q~ 90 (194)
T cd03213 23 QLLKNVSG-KAKPGELTAIMGPSGAGKSTLLNALA--GRRTGLGVSG-----EVLINGRPL-DKR---SFRKIIGYVPQD 90 (194)
T ss_pred cceecceE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCCce-----EEEECCEeC-chH---hhhheEEEccCc
Confidence 45566555 78999999999999999999999765 444 44333 556665532 211 11112221111
Q ss_pred -------hhhcceeEee---cCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHH
Q 019381 187 -------DVLENVAYAR---AYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQ 256 (342)
Q Consensus 187 -------~~~~~i~~~~---~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk 256 (342)
.+.+++.+.. ..+.-+ .+.+..+.++ ..+++++++|+++.-++. ..+ ..+.+.|+
T Consensus 91 ~~~~~~~t~~~~i~~~~~~~~LS~G~-~qrv~laral--~~~p~illlDEP~~~LD~--------~~~----~~l~~~l~ 155 (194)
T cd03213 91 DILHPTLTVRETLMFAAKLRGLSGGE-RKRVSIALEL--VSNPSLLFLDEPTSGLDS--------SSA----LQVMSLLR 155 (194)
T ss_pred ccCCCCCcHHHHHHHHHHhccCCHHH-HHHHHHHHHH--HcCCCEEEEeCCCcCCCH--------HHH----HHHHHHHH
Confidence 1222221110 111111 1112222222 368999999999987653 222 25666777
Q ss_pred HHHHHhCCEEEEEeccc
Q 019381 257 KLADEFGVAVVITNQVV 273 (342)
Q Consensus 257 ~la~~~~~~vi~~~h~~ 273 (342)
.+.++ +.++|+++|-.
T Consensus 156 ~~~~~-~~tiii~sh~~ 171 (194)
T cd03213 156 RLADT-GRTIICSIHQP 171 (194)
T ss_pred HHHhC-CCEEEEEecCc
Confidence 76654 89999999865
No 197
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.91 E-value=1.1e-08 Score=88.39 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=79.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc-------CC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY-------GL 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~-------~~ 183 (342)
.|+.+.. -+.+|+++.|.|++|||||||+..++ ...++..| .++++.+.- ..... ...+.. ..
T Consensus 16 il~~~s~-~i~~Ge~~~l~G~nGsGKSTLl~~i~--G~~~~~~G-----~v~~~g~~~-~~~~~-~~~~~i~~~~q~~~~ 85 (200)
T PRK13540 16 LLQQISF-HLPAGGLLHLKGSNGAGKTTLLKLIA--GLLNPEKG-----EILFERQSI-KKDLC-TYQKQLCFVGHRSGI 85 (200)
T ss_pred EEeeeeE-EECCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCe-----eEEECCCcc-ccCHH-HHHhheEEecccccc
Confidence 4555555 78899999999999999999999654 45554433 466665431 11000 111111 11
Q ss_pred Ch-hhhhcceeEee--cCCHHHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCCC
Q 019381 184 NG-ADVLENVAYAR--AYNTDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSGR 238 (342)
Q Consensus 184 ~~-~~~~~~i~~~~--~~~~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~~ 238 (342)
.+ ..+.+++.+.. ........+.++.+ .+.....+|+++++|+++.-++.
T Consensus 86 ~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~----- 160 (200)
T PRK13540 86 NPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE----- 160 (200)
T ss_pred CcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH-----
Confidence 11 12222222110 00011111111110 11122368999999999997753
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Q 019381 239 GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 277 (342)
Q Consensus 239 ~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~ 277 (342)
.. ...+...|+++++ .+.+||+++|-....+
T Consensus 161 ---~~----~~~l~~~l~~~~~-~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 161 ---LS----LLTIITKIQEHRA-KGGAVLLTSHQDLPLN 191 (200)
T ss_pred ---HH----HHHHHHHHHHHHH-cCCEEEEEeCCchhcc
Confidence 22 2367777777754 4899999999865443
No 198
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.91 E-value=7.8e-09 Score=88.59 Aligned_cols=140 Identities=20% Similarity=0.286 Sum_probs=82.3
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHH-HcCCChh--
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIAD-RYGLNGA-- 186 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~-~~~~~~~-- 186 (342)
|..+.. -+++|+++.|.|++|+||||++..++ .+.++..| .+.+++++- .++.+ +++ .+.+-|+
T Consensus 19 L~gvsl-~v~~Geiv~llG~NGaGKTTlLkti~--Gl~~~~~G-----~I~~~G~dit~~p~~~---r~r~Gi~~VPegR 87 (237)
T COG0410 19 LRGVSL-EVERGEIVALLGRNGAGKTTLLKTIM--GLVRPRSG-----RIIFDGEDITGLPPHE---RARLGIAYVPEGR 87 (237)
T ss_pred Eeeeee-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCe-----eEEECCeecCCCCHHH---HHhCCeEeCcccc
Confidence 333334 68999999999999999999999654 66654433 555655521 22222 111 1111111
Q ss_pred ------hhhcceeEe---ecC------CHHHHHHHHHHH--------------------HHHhHhcCceEEEEecccccc
Q 019381 187 ------DVLENVAYA---RAY------NTDHQSRLLLEA--------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 187 ------~~~~~i~~~---~~~------~~~~~~~~l~~l--------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
++.+|+.+- ... ..+...+++-.+ .+...-.+|+++++|+++.-+
T Consensus 88 ~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GL 167 (237)
T COG0410 88 RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 167 (237)
T ss_pred cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCc
Confidence 223333211 110 012222221111 111112689999999999876
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+. .+.++.+.++.+.++.++||+++-|-.+
T Consensus 168 aP~------------iv~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 168 APK------------IVEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred CHH------------HHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 542 3568999999999988999999987654
No 199
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.91 E-value=8.9e-09 Score=90.27 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=32.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..|
T Consensus 18 ~~l~~i~~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~G 59 (221)
T cd03244 18 PVLKNISF-SIKPGEKVGIVGRTGSGKSSLLLALF--RLVELSSG 59 (221)
T ss_pred ccccceEE-EECCCCEEEEECCCCCCHHHHHHHHH--cCCCCCCC
Confidence 35666666 79999999999999999999999765 44444433
No 200
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.91 E-value=6.5e-09 Score=104.25 Aligned_cols=142 Identities=20% Similarity=0.329 Sum_probs=84.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCC-----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLN----- 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~----- 184 (342)
+.|+.+-- -+++|+.++|.|++|||||||+..++ ...++..| .+++++.. ........+.+..++-
T Consensus 357 ~il~~i~l-~i~~G~~~aIvG~sGsGKSTLl~ll~--gl~~p~~G-----~I~i~g~~-i~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T PRK11176 357 PALRNINF-KIPAGKTVALVGRSGSGKSTIANLLT--RFYDIDEG-----EILLDGHD-LRDYTLASLRNQVALVSQNVH 427 (582)
T ss_pred ccccCceE-EeCCCCEEEEECCCCCCHHHHHHHHH--hccCCCCc-----eEEECCEE-hhhcCHHHHHhhceEEccCce
Confidence 34555555 78999999999999999999999664 55555443 56776642 1111111222333321
Q ss_pred --hhhhhcceeEeec--CCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEecc
Q 019381 185 --GADVLENVAYARA--YNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDSA 227 (342)
Q Consensus 185 --~~~~~~~i~~~~~--~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l 227 (342)
..++.+|+.+..+ .+.+++.+.++.+ .+...-.+++++++|++
T Consensus 428 lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEp 507 (582)
T PRK11176 428 LFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507 (582)
T ss_pred eecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 2245566665422 2333333333221 11112257999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.++.+ .+ ..+.+.|+++.+ ++|+|+++|-..
T Consensus 508 tsaLD~~-------t~-----~~i~~~l~~~~~--~~tvI~VtHr~~ 540 (582)
T PRK11176 508 TSALDTE-------SE-----RAIQAALDELQK--NRTSLVIAHRLS 540 (582)
T ss_pred cccCCHH-------HH-----HHHHHHHHHHhC--CCEEEEEecchH
Confidence 9988753 22 256667766543 689999988754
No 201
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=1.6e-08 Score=90.67 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=35.8
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++.. . ...+...|+.++++.+.+||+++|-..
T Consensus 145 ~~p~lllLDEPt~~LD~~--------~----~~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAF--------T----REQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred cCCCEEEEeCCCccCCHH--------H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 689999999999977642 2 236777788877666899999999765
No 202
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=1.1e-08 Score=90.65 Aligned_cols=41 Identities=29% Similarity=0.452 Sum_probs=31.9
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+.. -+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 20 ~l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~p~~G 60 (237)
T PRK11614 20 ALHEVSL-HINQGEIVTLIGANGAGKTTLLGTLC--GDPRATSG 60 (237)
T ss_pred eeeeeEE-EEcCCcEEEEECCCCCCHHHHHHHHc--CCCCCCCc
Confidence 4566555 78999999999999999999999654 55554433
No 203
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.90 E-value=3.5e-09 Score=95.35 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=36.7
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++.-++.. . ...+.+.|+.++++.+.+||+++|-..
T Consensus 169 ~~p~llllDEPt~~LD~~--------~----~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 169 QQAKVILADEPIASLDPE--------S----ARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred cCCCEEEecCccccCCHH--------H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 689999999999977632 2 237778888888777899999998765
No 204
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=7.5e-09 Score=93.69 Aligned_cols=142 Identities=16% Similarity=0.251 Sum_probs=78.9
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC---C
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL---N 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~---~ 184 (342)
+.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..| .++++...- .+...+ .+..++ +
T Consensus 23 ~il~~isl-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~~G-----~I~~~g~~i~~~~~~~~---~~~i~~v~q~ 91 (271)
T PRK13632 23 NALKNVSF-EINEGEYVAILGHNGSGKSTISKILT--GLLKPQSG-----EIKIDGITISKENLKEI---RKKIGIIFQN 91 (271)
T ss_pred cceeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----eEEECCEecCcCCHHHH---hcceEEEEeC
Confidence 35666655 79999999999999999999999654 45554433 445544321 011111 111111 0
Q ss_pred ------hhhhhcceeEee---cCCHHH----HHHHHHHH----------------------HHHhHhcCceEEEEecccc
Q 019381 185 ------GADVLENVAYAR---AYNTDH----QSRLLLEA----------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 185 ------~~~~~~~i~~~~---~~~~~~----~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~ 229 (342)
..++.+++.+.. ..+... ..++++.+ .+.....+++++++|+++.
T Consensus 92 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~ 171 (271)
T PRK13632 92 PDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171 (271)
T ss_pred HHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 012222322110 011111 11111110 1112236899999999998
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.++. .. ...+...|++++++.+.+||+++|-..
T Consensus 172 gLD~--------~~----~~~l~~~l~~~~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 172 MLDP--------KG----KREIKKIMVDLRKTRKKTLISITHDMD 204 (271)
T ss_pred cCCH--------HH----HHHHHHHHHHHHHhcCcEEEEEEechh
Confidence 7753 22 237778888887766689999998754
No 205
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.90 E-value=7.2e-09 Score=92.80 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=36.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++.-++. .. ...+...|+.++++.+.++|+++|-..
T Consensus 163 ~~p~llllDEP~~~LD~--------~~----~~~l~~~l~~~~~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 163 MRPKVMLFDEVTSALDP--------EL----VGEVLNVIRRLASEHDLTMLLVTHEMG 208 (252)
T ss_pred cCCCEEEEeCCcccCCH--------HH----HHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 68999999999987653 22 236778888888877999999999765
No 206
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.90 E-value=4.3e-08 Score=87.22 Aligned_cols=46 Identities=13% Similarity=0.291 Sum_probs=36.1
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 152 ~~p~llllDEPt~~LD~--------~~----~~~l~~~L~~~~~~~g~tvii~sH~~~ 197 (242)
T cd03295 152 ADPPLLLMDEPFGALDP--------IT----RDQLQEEFKRLQQELGKTIVFVTHDID 197 (242)
T ss_pred cCCCEEEecCCcccCCH--------HH----HHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 68999999999987653 22 236777888888777899999998765
No 207
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.89 E-value=1.9e-08 Score=89.22 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=36.3
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 149 ~~p~llllDEP~~~LD~--------~~----~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDP--------AS----RAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred cCCCEEEEcCCccCCCH--------HH----HHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 68999999999997764 22 237778888888767899999998765
No 208
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.1e-08 Score=93.40 Aligned_cols=46 Identities=11% Similarity=0.283 Sum_probs=36.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++.++.. .+ ..+.+.|+.++++.+.+||+++|-..
T Consensus 167 ~~p~lLlLDEPt~~LD~~--------~~----~~l~~~l~~~~~~~~~tiiiisH~~~ 212 (289)
T PRK13645 167 MDGNTLVLDEPTGGLDPK--------GE----EDFINLFERLNKEYKKRIIMVTHNMD 212 (289)
T ss_pred hCCCEEEEeCCcccCCHH--------HH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 679999999999987642 22 36777888888777999999999765
No 209
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.89 E-value=1.6e-08 Score=89.68 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=36.7
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++.. . ...+.+.|+.++++.+.+||+++|-..
T Consensus 170 ~~p~llllDEPt~~LD~~--------~----~~~l~~~l~~~~~~~~~tiiivsH~~~ 215 (236)
T cd03267 170 HEPEILFLDEPTIGLDVV--------A----QENIRNFLKEYNRERGTTVLLTSHYMK 215 (236)
T ss_pred cCCCEEEEcCCCCCCCHH--------H----HHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 689999999999977642 2 236777888888777899999999865
No 210
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.89 E-value=3.4e-09 Score=99.51 Aligned_cols=47 Identities=19% Similarity=0.406 Sum_probs=37.4
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
.+|+++++|++++.++. ..+ ..+...|+.++++.+.|||+++|-...
T Consensus 148 ~~p~lllLDEPts~LD~--------~~~----~~l~~~L~~l~~~~g~tiiivtH~~~~ 194 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDD--------PRK----YEILPYLERLHAEFGIPILYVSHSLQE 194 (354)
T ss_pred cCCCEEEEcCCCcCCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 68999999999998764 222 377888888888889999999997653
No 211
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.89 E-value=1.1e-08 Score=91.93 Aligned_cols=41 Identities=32% Similarity=0.376 Sum_probs=31.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..|
T Consensus 16 il~~is~-~i~~Ge~~~i~G~nGsGKSTLl~~i~--G~~~~~~G 56 (256)
T TIGR03873 16 IVDGVDV-TAPPGSLTGLLGPNGSGKSTLLRLLA--GALRPDAG 56 (256)
T ss_pred EEeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHc--CCCCCCCC
Confidence 4555555 78999999999999999999999764 55554443
No 212
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.89 E-value=3e-09 Score=92.09 Aligned_cols=41 Identities=32% Similarity=0.375 Sum_probs=32.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..|
T Consensus 20 il~~~s~-~i~~G~~~~i~G~nG~GKSTLl~~i~--G~~~~~~G 60 (204)
T cd03250 20 TLKDINL-EVPKGELVAIVGPVGSGKSSLLSALL--GELEKLSG 60 (204)
T ss_pred eeeeeeE-EECCCCEEEEECCCCCCHHHHHHHHh--CcCCCCCC
Confidence 4555555 79999999999999999999999764 45555544
No 213
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.89 E-value=1.5e-08 Score=94.21 Aligned_cols=145 Identities=16% Similarity=0.231 Sum_probs=82.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcC-----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYG----- 182 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~----- 182 (342)
..++.+.. -|.+|+++.|.|++|||||||+..++ ...++..| .++++++.- .....++.+....+
T Consensus 35 ~~l~~vsl-~i~~Ge~~~lvG~sGsGKSTLlk~i~--Gl~~p~~G-----~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~ 106 (331)
T PRK15079 35 KAVDGVTL-RLYEGETLGVVGESGCGKSTFARAII--GLVKATDG-----EVAWLGKDLLGMKDDEWRAVRSDIQMIFQD 106 (331)
T ss_pred EEEeeEEE-EEcCCCEEEEECCCCCCHHHHHHHHH--CCCCCCCc-----EEEECCEECCcCCHHHHHHHhCceEEEecC
Confidence 45666666 79999999999999999999999765 55554433 455555421 12222222211111
Q ss_pred ----CCh-hhhhcceeE----ee-cCCHHH----HHHHHHHH-----------------------HHHhHhcCceEEEEe
Q 019381 183 ----LNG-ADVLENVAY----AR-AYNTDH----QSRLLLEA-----------------------ASMMVETRFALMIVD 225 (342)
Q Consensus 183 ----~~~-~~~~~~i~~----~~-~~~~~~----~~~~l~~l-----------------------~~~~~~~~~~lvviD 225 (342)
+++ ..+.+++.+ .. ..+... ..++++.+ .+.....+|+++|+|
T Consensus 107 ~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD 186 (331)
T PRK15079 107 PLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD 186 (331)
T ss_pred chhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111 012222210 00 011111 11111110 112223689999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 226 ~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++++.++. ..+ .++++.|+.+.++++.++|+++|-..
T Consensus 187 EPts~LD~--------~~~----~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 187 EPVSALDV--------SIQ----AQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred CCCccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 99998764 222 37888888888888999999999765
No 214
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.88 E-value=1.9e-08 Score=93.46 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=37.7
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++|+|++++.++. .. ...++..|+.+.++++.++|+++|-..
T Consensus 178 ~~P~llilDEPts~LD~--------~~----~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 178 CRPKLLIADEPTTALDV--------TV----QAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred cCCCEEEEeCCCccCCH--------HH----HHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 68999999999998764 22 237888888988888999999999765
No 215
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=2.7e-08 Score=92.33 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=37.9
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++|+|++++.++.. . ...+++.|+.+.++.+.++|+++|-..
T Consensus 170 ~~P~llilDEPts~LD~~--------~----~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 170 CRPKLLIADEPTTALDVT--------I----QAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred hCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 689999999999987642 2 237888899998888999999999765
No 216
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.88 E-value=2.5e-08 Score=89.11 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=31.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~ 153 (342)
.|+.+.. -+++|+++.|.|++|||||||+..++ ...++..
T Consensus 18 ~l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~ 57 (250)
T PRK11264 18 VLHGIDL-EVKPGEVVAIIGPSGSGKTTLLRCIN--LLEQPEA 57 (250)
T ss_pred eeccceE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCC
Confidence 4566555 78999999999999999999999665 4444433
No 217
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=1.3e-08 Score=93.01 Aligned_cols=42 Identities=36% Similarity=0.379 Sum_probs=33.3
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 20 ~~l~~vsl-~i~~Ge~v~i~G~nGsGKSTLl~~l~--Gl~~p~~G 61 (288)
T PRK13643 20 RALFDIDL-EVKKGSYTALIGHTGSGKSTLLQHLN--GLLQPTEG 61 (288)
T ss_pred cceeeeEE-EEcCCCEEEEECCCCChHHHHHHHHh--cCCCCCCc
Confidence 35666665 79999999999999999999999665 55555544
No 218
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.88 E-value=6e-09 Score=94.10 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=36.7
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++.++. .. ...+.+.|++++++++.+||+++|-..
T Consensus 166 ~~p~lllLDEPt~~LD~--------~~----~~~l~~~l~~~~~~~g~tviivsH~~~ 211 (267)
T PRK15112 166 LRPKVIIADEALASLDM--------SM----RSQLINLMLELQEKQGISYIYVTQHLG 211 (267)
T ss_pred hCCCEEEEcCCcccCCH--------HH----HHHHHHHHHHHHHHcCcEEEEEeCCHH
Confidence 68999999999997763 22 237777888888877999999999765
No 219
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=1e-08 Score=94.86 Aligned_cols=48 Identities=23% Similarity=0.251 Sum_probs=36.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
+.|+.+.. -|++|+++.|.|++|||||||+..++ ...++..| .+++++
T Consensus 40 ~~L~~vsl-~i~~Ge~~~I~G~nGsGKSTLl~~L~--Gl~~p~~G-----~I~i~g 87 (320)
T PRK13631 40 VALNNISY-TFEKNKIYFIIGNSGSGKSTLVTHFN--GLIKSKYG-----TIQVGD 87 (320)
T ss_pred cceeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCC-----eEEECC
Confidence 46777766 79999999999999999999999654 55555443 455554
No 220
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=7.8e-09 Score=94.03 Aligned_cols=42 Identities=31% Similarity=0.315 Sum_probs=32.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+-. -|++|+++.|.|++|||||||+..++ ...++..|
T Consensus 21 ~~l~~is~-~i~~Ge~~~l~G~nGsGKSTLl~~i~--Gl~~p~~G 62 (280)
T PRK13649 21 RALFDVNL-TIEDGSYTAFIGHTGSGKSTIMQLLN--GLHVPTQG 62 (280)
T ss_pred ceeeeeEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCce
Confidence 35666655 78999999999999999999999664 55554443
No 221
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=2.2e-08 Score=90.67 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=32.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 16 il~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G 56 (271)
T PRK13638 16 VLKGLNL-DFSLSPVTGLVGANGCGKSTLFMNLS--GLLRPQKG 56 (271)
T ss_pred cccceEE-EEcCCCEEEEECCCCCCHHHHHHHHc--CCCCCCcc
Confidence 4566555 78999999999999999999999654 55555444
No 222
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.87 E-value=7.9e-09 Score=91.81 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=34.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..| .++++.
T Consensus 16 il~~~s~-~i~~Ge~~~l~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g 62 (240)
T PRK09493 16 VLHNIDL-NIDQGEVVVIIGPSGSGKSTLLRCIN--KLEEITSG-----DLIVDG 62 (240)
T ss_pred EeeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCce-----EEEECC
Confidence 4555555 78999999999999999999999765 44444433 455554
No 223
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=1.6e-08 Score=92.33 Aligned_cols=42 Identities=31% Similarity=0.431 Sum_probs=33.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..|
T Consensus 21 ~~l~~vsl-~i~~Ge~~~iiG~NGaGKSTLl~~l~--Gl~~p~~G 62 (287)
T PRK13641 21 KGLDNISF-ELEEGSFVALVGHTGSGKSTLMQHFN--ALLKPSSG 62 (287)
T ss_pred cceeeeEE-EEeCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc
Confidence 35666666 79999999999999999999999764 56665544
No 224
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.87 E-value=7.6e-09 Score=105.70 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=82.4
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCC----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGL---- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~---- 183 (342)
+.|+.+.- -+++|+.++|+|++|||||||+..++ ...++..| .+++++.. .++...++ +..++
T Consensus 467 ~vL~~isl-~i~~Ge~vaIvG~sGsGKSTLlklL~--gl~~p~~G-----~I~idg~~i~~~~~~~lr---~~i~~v~Q~ 535 (686)
T TIGR03797 467 LILDDVSL-QIEPGEFVAIVGPSGSGKSTLLRLLL--GFETPESG-----SVFYDGQDLAGLDVQAVR---RQLGVVLQN 535 (686)
T ss_pred cceeeeEE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCC-----EEEECCEEcCcCCHHHHH---hccEEEccC
Confidence 35666655 79999999999999999999999654 45554443 66777642 12232222 22222
Q ss_pred ---ChhhhhcceeEeecCCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEecc
Q 019381 184 ---NGADVLENVAYARAYNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDSA 227 (342)
Q Consensus 184 ---~~~~~~~~i~~~~~~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l 227 (342)
-..++.+|+.+.++.+.+++.+.++.+ .+...-.+++++++|++
T Consensus 536 ~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEp 615 (686)
T TIGR03797 536 GRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEA 615 (686)
T ss_pred CccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 122445566554443333333332211 11112268999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++-++.. .+ ..+.+.|+++ +.|+|+++|-..
T Consensus 616 TS~LD~~-------te-----~~i~~~L~~~----~~T~IiItHr~~ 646 (686)
T TIGR03797 616 TSALDNR-------TQ-----AIVSESLERL----KVTRIVIAHRLS 646 (686)
T ss_pred ccCCCHH-------HH-----HHHHHHHHHh----CCeEEEEecChH
Confidence 9987642 22 2455556553 679999998654
No 225
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.87 E-value=1.3e-08 Score=96.15 Aligned_cols=142 Identities=17% Similarity=0.184 Sum_probs=84.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA---- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~---- 186 (342)
.|..+-. -+.+|+...|.||||||||||+..+. ...++..| .+-+|+-. ++...-.++-++.|+-|+
T Consensus 351 il~~isF-~l~~G~~lgIIGPSgSGKSTLaR~lv--G~w~p~~G-----~VRLDga~-l~qWd~e~lG~hiGYLPQdVeL 421 (580)
T COG4618 351 ILKGISF-ALQAGEALGIIGPSGSGKSTLARLLV--GIWPPTSG-----SVRLDGAD-LRQWDREQLGRHIGYLPQDVEL 421 (580)
T ss_pred ceeccee-EecCCceEEEECCCCccHHHHHHHHH--cccccCCC-----cEEecchh-hhcCCHHHhccccCcCccccee
Confidence 3333333 68899999999999999999999664 55555444 66666542 222222233444555443
Q ss_pred ---hhhcceeEee-cCCHHHHHHHHH---------HH------------------------HHHhHhcCceEEEEecccc
Q 019381 187 ---DVLENVAYAR-AYNTDHQSRLLL---------EA------------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 187 ---~~~~~i~~~~-~~~~~~~~~~l~---------~l------------------------~~~~~~~~~~lvviD~l~~ 229 (342)
++.+||.-+. ..+.+.+.+.-. ++ .+...-.+|.+||+|++.+
T Consensus 422 F~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNs 501 (580)
T COG4618 422 FDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501 (580)
T ss_pred cCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 3445665443 333333322111 11 1111225799999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.++.+ .+. .+.+.+..+ |..|+++|+++|-.+
T Consensus 502 NLD~~-------GE~-----AL~~Ai~~~-k~rG~~vvviaHRPs 533 (580)
T COG4618 502 NLDSE-------GEA-----ALAAAILAA-KARGGTVVVIAHRPS 533 (580)
T ss_pred Ccchh-------HHH-----HHHHHHHHH-HHcCCEEEEEecCHH
Confidence 87642 221 455566654 456999999998765
No 226
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.86 E-value=1.6e-08 Score=88.99 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=35.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++..++. ..+ ..+.+.|+.++++ +.+||+++|-..
T Consensus 159 ~~p~llllDEP~~gLD~--------~~~----~~~~~~l~~~~~~-~~tiii~sH~~~ 203 (224)
T cd03220 159 LEPDILLIDEVLAVGDA--------AFQ----EKCQRRLRELLKQ-GKTVILVSHDPS 203 (224)
T ss_pred cCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 68999999999997763 222 3677788888766 889999999765
No 227
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=4.2e-09 Score=91.94 Aligned_cols=46 Identities=11% Similarity=0.300 Sum_probs=36.7
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++.-++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 148 ~~p~llllDEPt~~LD~--------~~----~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 148 AQPELLLLDEPFSALDR--------AL----RLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred cCCCEEEEcCCcccCCH--------HH----HHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 68999999999997763 22 237778888888877899999999865
No 228
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.86 E-value=2.8e-09 Score=87.05 Aligned_cols=137 Identities=21% Similarity=0.171 Sum_probs=79.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHH-HHHHHHH-------HcCCChh-h
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQ-RLLQIAD-------RYGLNGA-D 187 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~-rl~~~~~-------~~~~~~~-~ 187 (342)
-+.+|+.+.|.|++|||||||+.-+| .+..++.| .+++.+.. .++.+ |.+...+ .|.+-|. +
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlA--GLd~~ssG-----eV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~lt 104 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLA--GLDDPSSG-----EVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLT 104 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHh--cCCCCCCc-----eEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccch
Confidence 57899999999999999999998544 55544433 44454431 12221 1111122 2222222 3
Q ss_pred hhcceeEeecCC-------HHHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCCC
Q 019381 188 VLENVAYARAYN-------TDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSGR 238 (342)
Q Consensus 188 ~~~~i~~~~~~~-------~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~~ 238 (342)
.++|+.+.-... .......+..+ .+......|++++-|+++..++...
T Consensus 105 AlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~T--- 181 (228)
T COG4181 105 ALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT--- 181 (228)
T ss_pred hhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhH---
Confidence 344443321111 11111222211 1222235799999999998776421
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 239 GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 239 ~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
-.++...|-.+.++++.|.|+++|-..
T Consensus 182 ---------g~~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 182 ---------GDKIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred ---------HHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence 237888889999999999999998654
No 229
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.86 E-value=7.6e-09 Score=88.97 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=27.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
-+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~--G~~~~~~G 55 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIA--GIMQPSSG 55 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHh--cCCCCCCc
Confidence 68899999999999999999999664 55555443
No 230
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.86 E-value=8.2e-08 Score=86.08 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=36.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++. ..+ ..+...|+.++++.+.+||+++|-..
T Consensus 157 ~~p~lLlLDEPt~~LD~--------~~~----~~l~~~L~~~~~~~g~til~~sH~~~ 202 (254)
T PRK10418 157 CEAPFIIADEPTTDLDV--------VAQ----ARILDLLESIVQKRALGMLLVTHDMG 202 (254)
T ss_pred cCCCEEEEeCCCcccCH--------HHH----HHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 68999999999987753 222 36778888888877899999999765
No 231
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.86 E-value=1e-08 Score=103.02 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=81.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC------
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL------ 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~------ 183 (342)
+.|+.+-- -+++|+.++|.|++|||||||+..++ ...++..| .+++++.+ ........+.+..++
T Consensus 355 ~il~~i~l-~i~~Ge~iaIvG~SGsGKSTLl~lL~--gl~~p~~G-----~I~idg~~-i~~~~~~~l~~~i~~v~Q~~~ 425 (592)
T PRK10790 355 LVLQNINL-SVPSRGFVALVGHTGSGKSTLASLLM--GYYPLTEG-----EIRLDGRP-LSSLSHSVLRQGVAMVQQDPV 425 (592)
T ss_pred ceeeceeE-EEcCCCEEEEECCCCCCHHHHHHHHh--cccCCCCc-----eEEECCEE-hhhCCHHHHHhheEEEccCCc
Confidence 34666555 79999999999999999999999654 45554433 56666542 111111112222221
Q ss_pred -ChhhhhcceeEeecCCHHHHHHHHH-----------------------------------HHHHHhHhcCceEEEEecc
Q 019381 184 -NGADVLENVAYARAYNTDHQSRLLL-----------------------------------EAASMMVETRFALMIVDSA 227 (342)
Q Consensus 184 -~~~~~~~~i~~~~~~~~~~~~~~l~-----------------------------------~l~~~~~~~~~~lvviD~l 227 (342)
-..++.+|+.+....+.+++.+.++ -+++++ .+++++++|++
T Consensus 426 lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl--~~~~illlDEp 503 (592)
T PRK10790 426 VLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV--QTPQILILDEA 503 (592)
T ss_pred cccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH--hCCCEEEEeCC
Confidence 1124445555443333333332222 222222 57899999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.++.+ .+ ..+.+.|+++.+ ++|+|+++|-..
T Consensus 504 ts~LD~~-------t~-----~~i~~~l~~~~~--~~tvIivtHr~~ 536 (592)
T PRK10790 504 TANIDSG-------TE-----QAIQQALAAVRE--HTTLVVIAHRLS 536 (592)
T ss_pred cccCCHH-------HH-----HHHHHHHHHHhC--CCEEEEEecchH
Confidence 9987642 22 256667776643 688998888654
No 232
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.86 E-value=1.1e-08 Score=102.61 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=83.8
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCCC---
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGLN--- 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~--- 184 (342)
+.|+.+-- -+++|+.++|.|++|||||||+..++. ..| ..| .+++++.. .++...+ .+..++-
T Consensus 364 ~vL~~i~l-~i~~G~~vaIvG~SGsGKSTL~~lL~g--~~p-~~G-----~I~i~g~~i~~~~~~~l---r~~i~~v~Q~ 431 (588)
T PRK11174 364 TLAGPLNF-TLPAGQRIALVGPSGAGKTSLLNALLG--FLP-YQG-----SLKINGIELRELDPESW---RKHLSWVGQN 431 (588)
T ss_pred eeeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHhc--CCC-CCc-----EEEECCEecccCCHHHH---HhheEEecCC
Confidence 34565555 789999999999999999999997653 333 333 56666542 1233322 2333321
Q ss_pred ----hhhhhcceeEeec-CCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEec
Q 019381 185 ----GADVLENVAYARA-YNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDS 226 (342)
Q Consensus 185 ----~~~~~~~i~~~~~-~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~ 226 (342)
..++.+|+.+.++ .+.+++.+.++.+ .+...-.+++++++|+
T Consensus 432 ~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE 511 (588)
T PRK11174 432 PQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE 511 (588)
T ss_pred CcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2245667766533 3444444333221 1111225799999999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 227 ATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 227 l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++.++.+ .+ ..+.+.|+++. .+.|+|+++|-..
T Consensus 512 ~TSaLD~~-------te-----~~i~~~l~~~~--~~~TvIiItHrl~ 545 (588)
T PRK11174 512 PTASLDAH-------SE-----QLVMQALNAAS--RRQTTLMVTHQLE 545 (588)
T ss_pred CccCCCHH-------HH-----HHHHHHHHHHh--CCCEEEEEecChH
Confidence 99987643 22 25556666654 3688888888754
No 233
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.86 E-value=1.5e-08 Score=87.98 Aligned_cols=140 Identities=16% Similarity=0.183 Sum_probs=76.8
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcC-----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYG----- 182 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~----- 182 (342)
..|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..| .++++...- .+... .....+
T Consensus 22 ~~l~~isl-~i~~G~~~~i~G~nGsGKSTLl~~l~--Gl~~~~~G-----~i~~~g~~~~~~~~~~---~~~~i~~v~q~ 90 (207)
T cd03369 22 PVLKNVSF-KVKAGEKIGIVGRTGAGKSTLILALF--RFLEAEEG-----KIEIDGIDISTIPLED---LRSSLTIIPQD 90 (207)
T ss_pred ccccCceE-EECCCCEEEEECCCCCCHHHHHHHHh--cccCCCCC-----eEEECCEEhHHCCHHH---HHhhEEEEecC
Confidence 34666655 78999999999999999999999664 44444433 344544311 11111 111111
Q ss_pred --CChhhhhcceeEeecCCHHHHHHHHH---------------HHHHHhHhcCceEEEEeccccccccccCCCcchHHHH
Q 019381 183 --LNGADVLENVAYARAYNTDHQSRLLL---------------EAASMMVETRFALMIVDSATALYRTDFSGRGELSARQ 245 (342)
Q Consensus 183 --~~~~~~~~~i~~~~~~~~~~~~~~l~---------------~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~ 245 (342)
+.+..+.+++.+....+.....+.++ -..+.....+++++++|+++.-++. ..+
T Consensus 91 ~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~--------~~~- 161 (207)
T cd03369 91 PTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY--------ATD- 161 (207)
T ss_pred CcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH--------HHH-
Confidence 11113333433222222121111111 0011122268999999999987653 222
Q ss_pred HHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 246 MHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 246 ~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+.+.|+.+. + +.++|+++|-..
T Consensus 162 ---~~l~~~l~~~~-~-~~tiii~th~~~ 185 (207)
T cd03369 162 ---ALIQKTIREEF-T-NSTILTIAHRLR 185 (207)
T ss_pred ---HHHHHHHHHhc-C-CCEEEEEeCCHH
Confidence 25666777763 3 789999988754
No 234
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.85 E-value=2.4e-08 Score=90.31 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=35.9
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++.-++. ..+ ..+...|++++++++.+||+++|-..
T Consensus 171 ~~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tviiisH~~~ 216 (272)
T PRK13547 171 QPPRYLLLDEPTAALDL--------AHQ----HRLLDTVRRLARDWNLGVLAIVHDPN 216 (272)
T ss_pred CCCCEEEEcCccccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 37999999999987753 222 36777888888777899999999755
No 235
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=6.2e-08 Score=80.24 Aligned_cols=127 Identities=20% Similarity=0.306 Sum_probs=76.8
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcc
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLEN 191 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~ 191 (342)
|+.+-. -+++|+++.|.|++|+|||||+..++ ...++.. +.++++.+.... ..... ....
T Consensus 15 l~~~~~-~i~~g~~~~i~G~nGsGKStll~~l~--g~~~~~~-----G~i~~~~~~~~~-~~~~~-----------~~~~ 74 (157)
T cd00267 15 LDNVSL-TLKAGEIVALVGPNGSGKSTLLRAIA--GLLKPTS-----GEILIDGKDIAK-LPLEE-----------LRRR 74 (157)
T ss_pred EeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCc-----cEEEECCEEccc-CCHHH-----------HHhc
Confidence 444444 68899999999999999999999764 4555433 356777653211 00001 1112
Q ss_pred eeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Q 019381 192 VAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQ 271 (342)
Q Consensus 192 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h 271 (342)
+.+....+.-+ ...+..+.++ ..+++++++|+++.-++. .. ...+.+.|+.+.+. +.++++++|
T Consensus 75 i~~~~qlS~G~-~~r~~l~~~l--~~~~~i~ilDEp~~~lD~--------~~----~~~l~~~l~~~~~~-~~tii~~sh 138 (157)
T cd00267 75 IGYVPQLSGGQ-RQRVALARAL--LLNPDLLLLDEPTSGLDP--------AS----RERLLELLRELAEE-GRTVIIVTH 138 (157)
T ss_pred eEEEeeCCHHH-HHHHHHHHHH--hcCCCEEEEeCCCcCCCH--------HH----HHHHHHHHHHHHHC-CCEEEEEeC
Confidence 33322233322 2222222222 356999999999987653 22 23666777777665 789999999
Q ss_pred ccc
Q 019381 272 VVA 274 (342)
Q Consensus 272 ~~~ 274 (342)
-..
T Consensus 139 ~~~ 141 (157)
T cd00267 139 DPE 141 (157)
T ss_pred CHH
Confidence 876
No 236
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.85 E-value=3.9e-08 Score=86.58 Aligned_cols=46 Identities=26% Similarity=0.423 Sum_probs=36.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 162 ~~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~~sH~~~ 207 (228)
T cd03257 162 LNPKLLIADEPTSALDV--------SVQ----AQILDLLKKLQEELGLTLLFITHDLG 207 (228)
T ss_pred cCCCEEEecCCCCCCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 68999999999997753 222 36778888888877899999999765
No 237
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.85 E-value=3e-08 Score=91.28 Aligned_cols=140 Identities=19% Similarity=0.308 Sum_probs=82.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcC------
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYG------ 182 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~------ 182 (342)
..|.+.. -+++|+.+.|+|+||||||||.+.+. .+++. .+.++|+++. .++...++-+..++.
T Consensus 302 AVd~isl-~L~~gqTlGlVGESGSGKsTlG~all--rL~~s------~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDP 372 (534)
T COG4172 302 AVDGISL-TLRRGQTLGLVGESGSGKSTLGLALL--RLIPS------QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372 (534)
T ss_pred Eecccee-EecCCCeEEEEecCCCCcchHHHHHH--hhcCc------CceEEECCccccccChhhhhhhhhhceEEEeCC
Confidence 4455544 78999999999999999999999654 33331 2466666652 122333222222221
Q ss_pred ---CCh----hhhh-ccee-------------------------------EeecCCHHHHHHHHHHHHHHhHhcCceEEE
Q 019381 183 ---LNG----ADVL-ENVA-------------------------------YARAYNTDHQSRLLLEAASMMVETRFALMI 223 (342)
Q Consensus 183 ---~~~----~~~~-~~i~-------------------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~lvv 223 (342)
++| .++. +.+. |.+.++.-+ .+.+..++++ ..+|++|+
T Consensus 373 ygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ-RQRIAIARAl--iLkP~~i~ 449 (534)
T COG4172 373 YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ-RQRIAIARAL--ILKPELIL 449 (534)
T ss_pred CCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch-hhHHHHHHHH--hcCCcEEE
Confidence 111 1111 1111 122222111 1111221222 36899999
Q ss_pred EeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 224 VDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 224 iD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+|++++.++.. ....++..|+.+.++++.+-++++|--+
T Consensus 450 LDEPTSALD~S------------VQaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 450 LDEPTSALDRS------------VQAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred ecCCchHhhHH------------HHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 99999976532 2358899999999999999999999765
No 238
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=2.4e-08 Score=94.78 Aligned_cols=144 Identities=19% Similarity=0.254 Sum_probs=81.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHH-HHcC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIA-DRYG----- 182 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~-~~~~----- 182 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+.- .+...++... +..+
T Consensus 43 ~L~~isl-~i~~Gei~~LvG~NGsGKSTLLr~I~--Gl~~p~sG-----~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~ 114 (400)
T PRK10070 43 GVKDASL-AIEEGEIFVIMGLSGSGKSTMVRLLN--RLIEPTRG-----QVLIDGVDIAKISDAELREVRRKKIAMVFQS 114 (400)
T ss_pred EEEeEEE-EEcCCCEEEEECCCCchHHHHHHHHH--cCCCCCCC-----EEEECCEECCcCCHHHHHHHHhCCEEEEECC
Confidence 3555555 78999999999999999999999654 55555444 455654321 1221111111 1111
Q ss_pred --CCh-hhhhcceeEee---cCCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 183 --LNG-ADVLENVAYAR---AYNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 183 --~~~-~~~~~~i~~~~---~~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
+.+ .++.+|+.+.. ..+. ....+.++.+ .+.....+|+++++|++++-
T Consensus 115 ~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 115 FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 111 12223332210 0010 0111111111 11122368999999999997
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++. ..+ ..+...|++++++.+.|||+++|-..
T Consensus 195 LD~--------~~r----~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 195 LDP--------LIR----TEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred CCH--------HHH----HHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 764 222 36777888888777999999999765
No 239
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.85 E-value=2.8e-08 Score=93.72 Aligned_cols=143 Identities=15% Similarity=0.241 Sum_probs=83.7
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC---C---CCHHHHHHHH-------
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG---T---FRPQRLLQIA------- 178 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~---~---~~~~rl~~~~------- 178 (342)
|+.+.. -+++|+++.|.|++|||||||+..++ ...++..| .++++++. . .+...++...
T Consensus 40 l~~vsf-~i~~Gei~~I~G~nGsGKSTLlr~L~--Gl~~p~~G-----~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 40 VANASL-DIEEGEICVLMGLSGSGKSSLLRAVN--GLNPVSRG-----SVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred EEeeEE-EEcCCCEEEEECCCCCcHHHHHHHHh--CCCCCCCc-----EEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 444444 68999999999999999999999654 55655444 56676531 1 1222222221
Q ss_pred -HHcCCCh-hhhhcceeEee---cCCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEecc
Q 019381 179 -DRYGLNG-ADVLENVAYAR---AYNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSA 227 (342)
Q Consensus 179 -~~~~~~~-~~~~~~i~~~~---~~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l 227 (342)
+.+.+.+ -++.+|+.+.. ..+.. ...+.++.+ .+.....+|+++++|++
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEP 191 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEP 191 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 1112222 13444443211 01111 111222211 11122368999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++-++. ..+ ..+.+.|.+++++++.|||+++|-..
T Consensus 192 ts~LD~--------~~r----~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 192 FSALDP--------LIR----TQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred CccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 998764 222 36777888888888999999999765
No 240
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.9e-08 Score=91.23 Aligned_cols=143 Identities=20% Similarity=0.323 Sum_probs=78.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC-CHHHHHHHHHHcCC---C--
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF-RPQRLLQIADRYGL---N-- 184 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~-~~~rl~~~~~~~~~---~-- 184 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..| .++++.+.-. .......+....++ +
T Consensus 17 ~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~i~--Gl~~~~~G-----~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 88 (275)
T PRK13639 17 ALKGINF-KAEKGEMVALLGPNGAGKSTLFLHFN--GILKPTSG-----EVLIKGEPIKYDKKSLLEVRKTVGIVFQNPD 88 (275)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCcc-----EEEECCEECccccchHHHHHhheEEEeeChh
Confidence 4566655 79999999999999999999999664 45554433 4455543210 01001111111111 0
Q ss_pred ----hhhhhcceeEee---cCCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 185 ----GADVLENVAYAR---AYNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 185 ----~~~~~~~i~~~~---~~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
...+.+++.+.. .... ....++++.+ .+.....+|+++++|++++.+
T Consensus 89 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gL 168 (275)
T PRK13639 89 DQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168 (275)
T ss_pred hhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 012222222110 0000 0111111110 111223689999999999977
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+. .. ...+.+.|+.++++ +.+||+++|-..
T Consensus 169 D~--------~~----~~~l~~~l~~l~~~-~~til~vtH~~~ 198 (275)
T PRK13639 169 DP--------MG----ASQIMKLLYDLNKE-GITIIISTHDVD 198 (275)
T ss_pred CH--------HH----HHHHHHHHHHHHHC-CCEEEEEecCHH
Confidence 53 22 23677778887765 899999999865
No 241
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.85 E-value=1.6e-08 Score=87.38 Aligned_cols=140 Identities=17% Similarity=0.185 Sum_probs=76.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCCChh--
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGLNGA-- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~-- 186 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++.....++..| -++++.+.- ...... .....++-++
T Consensus 15 ~l~~is~-~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G-----~i~~~g~~~~~~~~~~~--~~~~i~~v~q~~ 86 (200)
T cd03217 15 ILKGVNL-TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG-----EILFKGEDITDLPPEER--ARLGIFLAFQYP 86 (200)
T ss_pred eeeccce-EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCcc-----EEEECCEECCcCCHHHH--hhCcEEEeecCh
Confidence 4555554 788999999999999999999997653211233332 466665421 111110 0011111111
Q ss_pred ------hhhccee-EeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 019381 187 ------DVLENVA-YARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLA 259 (342)
Q Consensus 187 ------~~~~~i~-~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la 259 (342)
.+.+++. +....+.-+ .+.+.-+.+ ...+|+++++|+++.-++.. . ...+...|++++
T Consensus 87 ~~~~~~~~~~~l~~~~~~LS~G~-~qrv~lara--l~~~p~illlDEPt~~LD~~--------~----~~~l~~~L~~~~ 151 (200)
T cd03217 87 PEIPGVKNADFLRYVNEGFSGGE-KKRNEILQL--LLLEPDLAILDEPDSGLDID--------A----LRLVAEVINKLR 151 (200)
T ss_pred hhccCccHHHHHhhccccCCHHH-HHHHHHHHH--HhcCCCEEEEeCCCccCCHH--------H----HHHHHHHHHHHH
Confidence 0111110 001111111 111222222 23689999999999877532 2 236777788776
Q ss_pred HHhCCEEEEEecccc
Q 019381 260 DEFGVAVVITNQVVA 274 (342)
Q Consensus 260 ~~~~~~vi~~~h~~~ 274 (342)
++ +.+||+++|-..
T Consensus 152 ~~-~~tiii~sh~~~ 165 (200)
T cd03217 152 EE-GKSVLIITHYQR 165 (200)
T ss_pred HC-CCEEEEEecCHH
Confidence 54 889999998765
No 242
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.6e-08 Score=95.89 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=84.7
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHc
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRY 181 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~ 181 (342)
.++.|-+.+..+.. -+++|+.+.|.|+||||||||+..++ ...++..| .+.++.-. +++...+++-+.-.
T Consensus 329 ~y~~g~~~l~~l~~-t~~~g~~talvG~SGaGKSTLl~lL~--G~~~~~~G-----~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 329 RYPDGKPALSDLNL-TIKAGQLTALVGASGAGKSTLLNLLL--GFLAPTQG-----EIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred ecCCCCcccCCcee-EecCCcEEEEECCCCCCHHHHHHHHh--CcCCCCCc-----eEEECCccccccCHHHHHhHeeee
Confidence 34445455555555 79999999999999999999999654 55554443 55554321 12222222211111
Q ss_pred CCC----hhhhhcceeEeecCC-HHHHHHHHHHH--------------------------------HHHhHhcCceEEEE
Q 019381 182 GLN----GADVLENVAYARAYN-TDHQSRLLLEA--------------------------------ASMMVETRFALMIV 224 (342)
Q Consensus 182 ~~~----~~~~~~~i~~~~~~~-~~~~~~~l~~l--------------------------------~~~~~~~~~~lvvi 224 (342)
+-+ +.++.+|+.+.++.. .+++.+.+++. .+...-.+.+++++
T Consensus 401 ~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ll 480 (559)
T COG4988 401 SQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLL 480 (559)
T ss_pred CCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 111 123445555544422 22222222211 11122256899999
Q ss_pred eccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 225 DSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 225 D~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
|++++.++.+. + ..+.+.|.+++++ .||++++|--
T Consensus 481 DEpTA~LD~et-------E-----~~i~~~l~~l~~~--ktvl~itHrl 515 (559)
T COG4988 481 DEPTAHLDAET-------E-----QIILQALQELAKQ--KTVLVITHRL 515 (559)
T ss_pred cCCccCCCHhH-------H-----HHHHHHHHHHHhC--CeEEEEEcCh
Confidence 99999887532 2 2677788888875 7888888754
No 243
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.85 E-value=2.3e-08 Score=90.21 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=36.6
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++.. . ...+.+.|++++++.+.+||+++|-..
T Consensus 167 ~~p~illLDEPt~~LD~~--------~----~~~l~~~l~~~~~~~g~tiiivsH~~~ 212 (265)
T TIGR02769 167 VKPKLIVLDEAVSNLDMV--------L----QAVILELLRKLQQAFGTAYLFITHDLR 212 (265)
T ss_pred cCCCEEEEeCCcccCCHH--------H----HHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 689999999999877532 2 236778888888877999999999765
No 244
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.85 E-value=8.5e-08 Score=85.89 Aligned_cols=46 Identities=30% Similarity=0.452 Sum_probs=36.3
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++. ..+ ..+...|+.++++.+.+||+++|-..
T Consensus 165 ~~p~vlllDEP~~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~vsH~~~ 210 (253)
T TIGR02323 165 TRPRLVFMDEPTGGLDV--------SVQ----ARLLDLLRGLVRDLGLAVIIVTHDLG 210 (253)
T ss_pred cCCCEEEEcCCCccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999999987753 222 36777888887777999999999765
No 245
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.85 E-value=1.8e-08 Score=89.68 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=31.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..|
T Consensus 17 ~l~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~l~--G~~~p~~G 57 (242)
T TIGR03411 17 ALNDLSL-YVDPGELRVIIGPNGAGKTTMMDVIT--GKTRPDEG 57 (242)
T ss_pred EeeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCC
Confidence 4555555 78999999999999999999999665 44454433
No 246
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.84 E-value=6.1e-08 Score=79.12 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=69.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhc
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLE 190 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~ 190 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..| .++++.. .
T Consensus 15 ~l~~~~~-~~~~Ge~~~i~G~nGsGKStLl~~l~--G~~~~~~G-----~i~~~~~-----------------------~ 63 (144)
T cd03221 15 LLKDISL-TINPGDRIGLVGRNGAGKSTLLKLIA--GELEPDEG-----IVTWGST-----------------------V 63 (144)
T ss_pred EEEeeEE-EECCCCEEEEECCCCCCHHHHHHHHc--CCCCCCce-----EEEECCe-----------------------E
Confidence 3444444 78999999999999999999999654 45554433 5666542 0
Q ss_pred ceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Q 019381 191 NVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITN 270 (342)
Q Consensus 191 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~ 270 (342)
.+.+....+.-+ .+.+..++++ ..+++++++|+++.-++. ..+ ..+.+.|+++ +.++++++
T Consensus 64 ~i~~~~~lS~G~-~~rv~laral--~~~p~illlDEP~~~LD~--------~~~----~~l~~~l~~~----~~til~~t 124 (144)
T cd03221 64 KIGYFEQLSGGE-KMRLALAKLL--LENPNLLLLDEPTNHLDL--------ESI----EALEEALKEY----PGTVILVS 124 (144)
T ss_pred EEEEEccCCHHH-HHHHHHHHHH--hcCCCEEEEeCCccCCCH--------HHH----HHHHHHHHHc----CCEEEEEE
Confidence 122222233222 2222222333 368999999999987653 221 2444444443 57999998
Q ss_pred cccc
Q 019381 271 QVVA 274 (342)
Q Consensus 271 h~~~ 274 (342)
|-..
T Consensus 125 h~~~ 128 (144)
T cd03221 125 HDRY 128 (144)
T ss_pred CCHH
Confidence 8765
No 247
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.84 E-value=2e-08 Score=89.06 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=31.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..|
T Consensus 17 ~l~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~~~~G 57 (237)
T cd03252 17 ILDNISL-RIKPGEVVGIVGRSGSGKSTLTKLIQ--RFYVPENG 57 (237)
T ss_pred ceeceEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCcCCCCC
Confidence 4555555 68999999999999999999999765 45454433
No 248
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.84 E-value=2.7e-08 Score=97.75 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=78.1
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCCChh-
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGLNGA- 186 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~- 186 (342)
..|+.+.. -+.+|+++.|.|++|||||||+..++ ...++..| .++++.... .+.... .+.+++.++
T Consensus 17 ~il~~vsl-~i~~Ge~~~liG~nGsGKSTLl~~l~--G~~~p~~G-----~i~~~~~~~~~~~~~~~---~~~i~~~~q~ 85 (490)
T PRK10938 17 KTLQLPSL-TLNAGDSWAFVGANGSGKSALARALA--GELPLLSG-----ERQSQFSHITRLSFEQL---QKLVSDEWQR 85 (490)
T ss_pred eecccceE-EEcCCCEEEEECCCCCCHHHHHHHHh--ccCCCCCc-----eEEECCcccccCCHHHH---HHHhceeccC
Confidence 35666665 78999999999999999999999655 55555444 445544321 111111 111221111
Q ss_pred ---------------hhhcceeEeecCCHHHHHHHHHHH----------------------HHHhHhcCceEEEEecccc
Q 019381 187 ---------------DVLENVAYARAYNTDHQSRLLLEA----------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 187 ---------------~~~~~i~~~~~~~~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~ 229 (342)
.+.+++... ........+.++.+ .+.....+|+++++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (490)
T PRK10938 86 NNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFD 164 (490)
T ss_pred cchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 111111100 00001111112111 1112236899999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.++. .. ...+.+.|++++++ +.+||+++|-..
T Consensus 165 ~LD~--------~~----~~~l~~~l~~~~~~-g~tvii~tH~~~ 196 (490)
T PRK10938 165 GLDV--------AS----RQQLAELLASLHQS-GITLVLVLNRFD 196 (490)
T ss_pred cCCH--------HH----HHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 8764 22 23677778887765 899999999765
No 249
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.84 E-value=2.6e-08 Score=89.42 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=35.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..| .++++.+
T Consensus 20 ~l~~is~-~i~~Ge~~~l~G~nGsGKSTLl~~i~--G~~~~~~G-----~i~~~g~ 67 (257)
T PRK10619 20 VLKGVSL-QANAGDVISIIGSSGSGKSTFLRCIN--FLEKPSEG-----SIVVNGQ 67 (257)
T ss_pred EEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCe-----EEEECCE
Confidence 4555555 78999999999999999999999655 45554433 4555543
No 250
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.84 E-value=1.2e-08 Score=88.19 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=93.1
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC--CCceE-EEecCCCCCH-----HHHHHHHHH
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG--EGKAM-YIDAEGTFRP-----QRLLQIADR 180 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~--~~~vl-~i~~e~~~~~-----~rl~~~~~~ 180 (342)
+..|+++.. -++.|+.+.|.|++|+|||||+.-+ +.+.+|+.|.. .+++. .++....|.+ +.+.....-
T Consensus 40 ~~aL~disf-~i~~Ge~vGiiG~NGaGKSTLlkli--aGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~ 116 (249)
T COG1134 40 FWALKDISF-EIYKGERVGIIGHNGAGKSTLLKLI--AGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLI 116 (249)
T ss_pred EEEecCceE-EEeCCCEEEEECCCCCcHHHHHHHH--hCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHH
Confidence 446777777 8999999999999999999999954 47888877621 23333 2222222221 222222223
Q ss_pred cCCChhhhhcceeEeecCCHHHHHHHHH------------HH-HHHhHhcCceEEEEeccccccccccCCCcchHHHHHH
Q 019381 181 YGLNGADVLENVAYARAYNTDHQSRLLL------------EA-ASMMVETRFALMIVDSATALYRTDFSGRGELSARQMH 247 (342)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~------------~l-~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~ 247 (342)
+|+..+++-+... ......++-+.++ ++ -......+|+++++|+.-+.-++.|
T Consensus 117 ~G~~~~ei~~~~~--eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F------------ 182 (249)
T COG1134 117 LGLTRKEIDEKVD--EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAF------------ 182 (249)
T ss_pred hCccHHHHHHHHH--HHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHH------------
Confidence 3443322111100 0000111111111 00 1112235799999999988644322
Q ss_pred HHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEee
Q 019381 248 LAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKG 308 (342)
Q Consensus 248 l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~ 308 (342)
..+....+.++.++ +.++|+++|-.. .+...||..++|+++
T Consensus 183 ~~K~~~rl~e~~~~-~~tiv~VSHd~~-------------------~I~~~Cd~~i~l~~G 223 (249)
T COG1134 183 QEKCLERLNELVEK-NKTIVLVSHDLG-------------------AIKQYCDRAIWLEHG 223 (249)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEECCHH-------------------HHHHhcCeeEEEeCC
Confidence 23566677777665 589999998765 355789999999875
No 251
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=8.8e-09 Score=90.82 Aligned_cols=48 Identities=27% Similarity=0.323 Sum_probs=35.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++..
T Consensus 18 ~l~~isl-~i~~G~~~~i~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~ 65 (229)
T cd03254 18 VLKDINF-SIKPGETVAIVGPTGAGKTTLINLLM--RFYDPQKG-----QILIDGI 65 (229)
T ss_pred cccceEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCcCCCCC-----EEEECCE
Confidence 4666555 78999999999999999999999765 45554433 4555543
No 252
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.84 E-value=6.9e-09 Score=92.03 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=36.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++.-++.. . ...+.+.|+.++++.+++||+++|-..
T Consensus 147 ~~p~llllDEP~~~LD~~--------~----~~~~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAK--------V----RKELRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred cCCCEEEEcCCcccCCHH--------H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 679999999999977642 2 236777888887767899999999765
No 253
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.83 E-value=6e-08 Score=85.16 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=30.8
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..|
T Consensus 16 l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~G 55 (223)
T TIGR03740 16 VNNISL-TVPKNSVYGLLGPNGAGKSTLLKMIT--GILRPTSG 55 (223)
T ss_pred EeeeEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCce
Confidence 444444 68899999999999999999999654 45555544
No 254
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=7e-09 Score=91.89 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=36.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++.-++. ..+ ..+...|+.++.++++++|+++|-..
T Consensus 146 ~~p~llllDEPt~gLD~--------~~~----~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 146 VNPKILLLDEPFSALDV--------RTK----EKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred cCCCEEEECCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 68999999999997753 222 36777888888777999999998654
No 255
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.83 E-value=2.2e-08 Score=88.18 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=28.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++
T Consensus 15 ~l~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (227)
T cd03260 15 ALKDISL-DIPKGEITALIGPSGCGKSTLLRLLN 47 (227)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4555555 78999999999999999999999765
No 256
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.83 E-value=1.5e-08 Score=103.75 Aligned_cols=139 Identities=18% Similarity=0.267 Sum_probs=81.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCC------
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLN------ 184 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~------ 184 (342)
.|+.+-- -+++|+.++|+|++|||||||+..++ ...++..| .+++++.. ........+.+..++-
T Consensus 480 vL~~i~l-~i~~G~~iaIvG~sGsGKSTLlklL~--gl~~p~~G-----~I~idg~~-l~~~~~~~lr~~i~~v~Q~~~l 550 (694)
T TIGR03375 480 ALDNVSL-TIRPGEKVAIIGRIGSGKSTLLKLLL--GLYQPTEG-----SVLLDGVD-IRQIDPADLRRNIGYVPQDPRL 550 (694)
T ss_pred ceeeeeE-EECCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----eEEECCEE-hhhCCHHHHHhccEEECCChhh
Confidence 4555555 78999999999999999999999654 55554443 66666542 1111111122222221
Q ss_pred -hhhhhcceeEeec-CCHHHHHHHHH-----------------------------------HHHHHhHhcCceEEEEecc
Q 019381 185 -GADVLENVAYARA-YNTDHQSRLLL-----------------------------------EAASMMVETRFALMIVDSA 227 (342)
Q Consensus 185 -~~~~~~~i~~~~~-~~~~~~~~~l~-----------------------------------~l~~~~~~~~~~lvviD~l 227 (342)
..++.+|+.+.++ .+.+++.+.++ -++++ -.+++++++|++
T Consensus 551 f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal--l~~p~iliLDE~ 628 (694)
T TIGR03375 551 FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL--LRDPPILLLDEP 628 (694)
T ss_pred hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC
Confidence 1244455554433 23333222222 11222 267999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.++.+ .+ ..+.+.|+++.+ +.|+|+++|--.
T Consensus 629 Ts~LD~~-------te-----~~i~~~l~~~~~--~~T~iiItHrl~ 661 (694)
T TIGR03375 629 TSAMDNR-------SE-----ERFKDRLKRWLA--GKTLVLVTHRTS 661 (694)
T ss_pred CCCCCHH-------HH-----HHHHHHHHHHhC--CCEEEEEecCHH
Confidence 9987642 22 256666666543 789999988754
No 257
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.83 E-value=7.8e-09 Score=90.26 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=32.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. .+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 26 il~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~i~--G~~~~~~G 66 (214)
T PRK13543 26 VFGPLDF-HVDAGEALLVQGDNGAGKTTLLRVLA--GLLHVESG 66 (214)
T ss_pred eeecceE-EECCCCEEEEEcCCCCCHHHHHHHHh--CCCCCCCe
Confidence 4555555 79999999999999999999999765 55555444
No 258
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=8.5e-08 Score=89.22 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=37.6
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++|+|++++.++. .. ..++++.|+++.++++++||+++|-..
T Consensus 175 ~~P~llilDEPts~LD~--------~~----~~~i~~lL~~l~~~~g~tii~itHdl~ 220 (330)
T PRK15093 175 NQPRLLIADEPTNAMEP--------TT----QAQIFRLLTRLNQNNNTTILLISHDLQ 220 (330)
T ss_pred CCCCEEEEeCCCCcCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 68999999999998764 22 237888888888888999999999765
No 259
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.83 E-value=1.8e-08 Score=99.18 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=32.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+.. -+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 18 ~~l~~is~-~i~~Ge~~~l~G~NGsGKSTLl~~l~--G~~~p~~G 59 (501)
T PRK10762 18 KALSGAAL-NVYPGRVMALVGENGAGKSTMMKVLT--GIYTRDAG 59 (501)
T ss_pred EEeeeeeE-EEcCCeEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 35666665 78999999999999999999999654 55555444
No 260
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.83 E-value=6.1e-08 Score=88.99 Aligned_cols=138 Identities=16% Similarity=0.197 Sum_probs=82.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHc-----------CC--
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRY-----------GL-- 183 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~-----------~~-- 183 (342)
.|++|+++-|.|.+||||||||+-+ .++..|..| -++++++. .-..++.+.++... +.
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LL--tGL~~PqsG-----~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~ 417 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLL--TGLYQPQSG-----EILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG 417 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHH--hcccCCCCC-----ceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc
Confidence 6899999999999999999999954 466665554 67777652 11234444444321 11
Q ss_pred --Chh---hhhccee-----------EeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHH
Q 019381 184 --NGA---DVLENVA-----------YARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMH 247 (342)
Q Consensus 184 --~~~---~~~~~i~-----------~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~ 247 (342)
.++ ..++++. +....-...+.+.+..+.++++ .-+++|+|+..+=. +..-|.
T Consensus 418 ~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQ--------DPaFRR-- 485 (546)
T COG4615 418 KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQ--------DPAFRR-- 485 (546)
T ss_pred CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccC--------ChHHHH--
Confidence 111 1111111 1110111223344555555554 34789999998732 234443
Q ss_pred HHHHHHHHHHHHHHhCCEEEEEeccccccC
Q 019381 248 LAKFLRSLQKLADEFGVAVVITNQVVAQVD 277 (342)
Q Consensus 248 l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~ 277 (342)
.+...|--+.|+.|.||++++|--..++
T Consensus 486 --~FY~~lLp~LK~qGKTI~aIsHDd~YF~ 513 (546)
T COG4615 486 --EFYQVLLPLLKEQGKTIFAISHDDHYFI 513 (546)
T ss_pred --HHHHHHhHHHHHhCCeEEEEecCchhhh
Confidence 6666777777888999999999866544
No 261
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.83 E-value=3e-08 Score=88.57 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=27.1
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
|+.+.. -+.+|+++.|.|++|||||||+..++
T Consensus 12 l~~vsl-~i~~Gei~~l~G~nGsGKSTLl~~l~ 43 (248)
T PRK03695 12 LGPLSA-EVRAGEILHLVGPNGAGKSTLLARMA 43 (248)
T ss_pred ecceEE-EEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 455544 68999999999999999999999664
No 262
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.83 E-value=2.3e-08 Score=98.61 Aligned_cols=143 Identities=19% Similarity=0.283 Sum_probs=77.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHH-----HHHHcCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQ-----IADRYGL 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~-----~~~~~~~ 183 (342)
.|+.+.. -+.+|+++.|.|++|||||||+..++ ...++..| .++++.+.- .+....+. +.+....
T Consensus 26 il~~vsl-~i~~Ge~~~liG~NGsGKSTLl~~l~--Gl~~p~~G-----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (510)
T PRK15439 26 VLKGIDF-TLHAGEVHALLGGNGAGKSTLMKIIA--GIVPPDSG-----TLEIGGNPCARLTPAKAHQLGIYLVPQEPLL 97 (510)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCce-----EEEECCEECCCCCHHHHHhCCEEEEeccCcc
Confidence 4666666 79999999999999999999999654 55554443 444544311 11111100 0000000
Q ss_pred Ch-hhhhcceeEeecCC---HHHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCC
Q 019381 184 NG-ADVLENVAYARAYN---TDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSG 237 (342)
Q Consensus 184 ~~-~~~~~~i~~~~~~~---~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~ 237 (342)
.+ -.+.+++.+..... .....+.++.+ .+.....+|+++++|++++.++.
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~---- 173 (510)
T PRK15439 98 FPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTP---- 173 (510)
T ss_pred CCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH----
Confidence 00 01222222211000 00111111110 11122368999999999998764
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 238 RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 238 ~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.. ...+...|+.++++ +.+||+++|-..
T Consensus 174 ----~~----~~~l~~~l~~~~~~-g~tiiivtHd~~ 201 (510)
T PRK15439 174 ----AE----TERLFSRIRELLAQ-GVGIVFISHKLP 201 (510)
T ss_pred ----HH----HHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 22 23677778887765 899999999765
No 263
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=2.2e-08 Score=88.69 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=31.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 16 ~l~~i~~-~i~~Ge~~~l~G~nGsGKSTLl~~i~--Gl~~~~~G 56 (236)
T cd03253 16 VLKDVSF-TIPAGKKVAIVGPSGSGKSTILRLLF--RFYDVSSG 56 (236)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cccCCCCC
Confidence 4555544 78999999999999999999999765 45554443
No 264
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=2.3e-08 Score=88.40 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=35.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..| .++++.+
T Consensus 17 ~l~~i~~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G-----~i~~~g~ 64 (234)
T cd03251 17 VLRDISL-DIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSG-----RILIDGH 64 (234)
T ss_pred ceeeeeE-EEcCCCEEEEECCCCCCHHHHHHHHh--ccccCCCC-----EEEECCE
Confidence 4555555 68999999999999999999999654 55554433 4555543
No 265
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.82 E-value=5.4e-08 Score=85.24 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=31.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 17 il~~is~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~~~~G 57 (220)
T cd03263 17 AVDDLSL-NVYKGEIFGLLGHNGAGKTTTLKMLT--GELRPTSG 57 (220)
T ss_pred eecceEE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 4555555 78999999999999999999999654 55555443
No 266
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.82 E-value=1.8e-08 Score=99.50 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=34.9
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++.++.. . ...+.+.|+.++++ +.+||+++|-..
T Consensus 426 ~~p~lLlLDEPt~~LD~~--------~----~~~l~~~l~~l~~~-g~tvi~vsHd~~ 470 (510)
T PRK09700 426 CCPEVIIFDEPTRGIDVG--------A----KAEIYKVMRQLADD-GKVILMVSSELP 470 (510)
T ss_pred cCCCEEEECCCCCCcCHH--------H----HHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence 679999999999987642 2 23677778887754 899999999754
No 267
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.82 E-value=1.2e-08 Score=89.61 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=34.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++..++. ..+ ..+.+.|+.++++ +.+||+++|-..
T Consensus 130 ~~p~llilDEP~~~LD~--------~~~----~~l~~~l~~~~~~-~~tvii~sH~~~ 174 (223)
T TIGR03771 130 TRPSVLLLDEPFTGLDM--------PTQ----ELLTELFIELAGA-GTAILMTTHDLA 174 (223)
T ss_pred cCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHc-CCEEEEEeCCHH
Confidence 68999999999997753 222 3677777777654 899999998765
No 268
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.81 E-value=4.1e-08 Score=90.26 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=32.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..|
T Consensus 17 ~l~~is~-~i~~Gei~~l~G~NGaGKTTLl~~l~--Gl~~~~~G 57 (301)
T TIGR03522 17 ALDEVSF-EAQKGRIVGFLGPNGAGKSTTMKIIT--GYLPPDSG 57 (301)
T ss_pred EEEEeEE-EEeCCeEEEEECCCCCCHHHHHHHHh--CCCCCCce
Confidence 4566555 78999999999999999999999654 55555544
No 269
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.81 E-value=4.9e-08 Score=87.71 Aligned_cols=46 Identities=33% Similarity=0.411 Sum_probs=36.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++.-++.. . ...+...|+.++++++.+||+++|-..
T Consensus 168 ~~p~llllDEPt~~LD~~--------~----~~~l~~~l~~~~~~~~~tii~isH~~~ 213 (258)
T PRK11701 168 THPRLVFMDEPTGGLDVS--------V----QARLLDLLRGLVRELGLAVVIVTHDLA 213 (258)
T ss_pred cCCCEEEEcCCcccCCHH--------H----HHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 689999999999877532 1 236777888888777999999999765
No 270
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=2.5e-08 Score=88.70 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=34.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..| .++++.+
T Consensus 17 il~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~G-----~i~~~g~ 64 (242)
T PRK11124 17 ALFDITL-DCPQGETLVLLGPSGAGKSSLLRVLN--LLEMPRSG-----TLNIAGN 64 (242)
T ss_pred eEeeeee-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCce-----EEEECCE
Confidence 4455544 78999999999999999999999765 45554433 3555543
No 271
>PRK04296 thymidine kinase; Provisional
Probab=98.81 E-value=3e-08 Score=84.86 Aligned_cols=141 Identities=15% Similarity=0.243 Sum_probs=83.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec--CCCCCHHHHHHHHHHcCCChhhhhcceeEeecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA--EGTFRPQRLLQIADRYGLNGADVLENVAYARAYN 199 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~--e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (342)
.|.+++++|++|+||||++..++..... .+.+|+++.. +.... ...++.+++..... +. ...
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~~~d~~~~---~~~i~~~lg~~~~~----~~---~~~ 64 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKPAIDDRYG---EGKVVSRIGLSREA----IP---VSS 64 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEecccccccc---CCcEecCCCCcccc----eE---eCC
Confidence 3789999999999999999999877655 4667888854 22111 11234444433221 11 122
Q ss_pred HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCC
Q 019381 200 TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGS 279 (342)
Q Consensus 200 ~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~ 279 (342)
.. +++..+.. ...++++||||+++.+-. . ++.. |.+.++..+++||++.+... +.+.
T Consensus 65 ~~---~~~~~~~~--~~~~~dvviIDEaq~l~~---------~-------~v~~-l~~~l~~~g~~vi~tgl~~~-~~~~ 121 (190)
T PRK04296 65 DT---DIFELIEE--EGEKIDCVLIDEAQFLDK---------E-------QVVQ-LAEVLDDLGIPVICYGLDTD-FRGE 121 (190)
T ss_pred hH---HHHHHHHh--hCCCCCEEEEEccccCCH---------H-------HHHH-HHHHHHHcCCeEEEEecCcc-cccC
Confidence 22 22333222 345789999999976411 0 2333 33444567999999976654 2221
Q ss_pred cccCCCCccccCccccccccceEEEEEeec
Q 019381 280 AIFAGPQIKPIGGNIMAHASTTRLALRKGR 309 (342)
Q Consensus 280 ~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~ 309 (342)
.|. ....+...+|.+..|....
T Consensus 122 -~f~-------~~~~L~~~aD~V~~l~~vC 143 (190)
T PRK04296 122 -PFE-------GSPYLLALADKVTELKAIC 143 (190)
T ss_pred -cCc-------hHHHHHHhcCeEEEeeEEc
Confidence 221 2235667889999888754
No 272
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.81 E-value=3.2e-08 Score=99.84 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=37.8
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++|+|++++.++. .. ...+++.|+.++++++.+||+++|-..
T Consensus 480 ~~p~llllDEPts~LD~--------~~----~~~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 480 LNPKVIIADEAVSALDV--------SI----RGQIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred cCCCEEEEeCCcccCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999999998764 22 237888888988888999999999765
No 273
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.81 E-value=1.2e-08 Score=89.44 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=31.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~ 153 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..
T Consensus 19 ~l~~i~~-~i~~G~~~~i~G~nGsGKSTLl~~i~--G~~~~~~ 58 (220)
T cd03245 19 ALDNVSL-TIRAGEKVAIIGRVGSGKSTLLKLLA--GLYKPTS 58 (220)
T ss_pred cccceEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCcCCCC
Confidence 4555555 68999999999999999999999664 4444443
No 274
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.81 E-value=1.8e-08 Score=103.34 Aligned_cols=139 Identities=18% Similarity=0.188 Sum_probs=81.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCCC---
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGLN--- 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~--- 184 (342)
+.|+.+-- -+++|+.+.|.|++|||||||+..++ ...++..| .+++++.. .++... +.+..++-
T Consensus 488 ~iL~~isl-~i~~G~~vaIvG~SGsGKSTLlklL~--gl~~p~~G-----~I~idg~~i~~~~~~~---lr~~i~~v~Q~ 556 (708)
T TIGR01193 488 NILSDISL-TIKMNSKTTIVGMSGSGKSTLAKLLV--GFFQARSG-----EILLNGFSLKDIDRHT---LRQFINYLPQE 556 (708)
T ss_pred cceeceeE-EECCCCEEEEECCCCCCHHHHHHHHh--ccCCCCCc-----EEEECCEEHHHcCHHH---HHHheEEEecC
Confidence 45666666 79999999999999999999999654 44554443 56666542 112222 22222221
Q ss_pred ----hhhhhcceeEee--cCCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEe
Q 019381 185 ----GADVLENVAYAR--AYNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVD 225 (342)
Q Consensus 185 ----~~~~~~~i~~~~--~~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD 225 (342)
..++.+|+.+.. ..+.+++.+.++.+ .+...-.+++++++|
T Consensus 557 ~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLD 636 (708)
T TIGR01193 557 PYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILD 636 (708)
T ss_pred ceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 124455555431 12222322222211 111122689999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 226 ~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++++.++.+ .+ ..+.+.|+.+ .+.|+|+++|-..
T Consensus 637 E~Ts~LD~~-------te-----~~i~~~L~~~---~~~T~IiitHr~~ 670 (708)
T TIGR01193 637 ESTSNLDTI-------TE-----KKIVNNLLNL---QDKTIIFVAHRLS 670 (708)
T ss_pred CccccCCHH-------HH-----HHHHHHHHHh---cCCEEEEEecchH
Confidence 999987642 21 2455666653 3789999998764
No 275
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.81 E-value=1.1e-07 Score=82.02 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=31.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..|
T Consensus 15 ~l~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~G 55 (198)
T TIGR01189 15 LFEGLSF-TLNAGEALQVTGPNGIGKTTLLRILA--GLLRPDSG 55 (198)
T ss_pred EEeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCcc
Confidence 4555555 68999999999999999999999654 45554433
No 276
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.81 E-value=2.6e-08 Score=90.19 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=29.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -|++|+++.|.|++|+|||||+..++.
T Consensus 19 ~l~~isl-~I~~Ge~~~IvG~nGsGKSTLl~~L~g 52 (275)
T cd03289 19 VLENISF-SISPGQRVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred ceeceEE-EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4666665 799999999999999999999997653
No 277
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=2.1e-08 Score=89.90 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=30.9
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 17 il~~is~-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~~~~G 57 (255)
T PRK11231 17 ILNDLSL-SLPTGKITALIGPNGCGKSTLLKCFA--RLLTPQSG 57 (255)
T ss_pred EEeeeee-EEcCCcEEEEECCCCCCHHHHHHHHh--CCcCCCCc
Confidence 3444444 68899999999999999999999664 44554433
No 278
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=6.6e-08 Score=85.47 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=36.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++.-++. ..+ ..+.+.|+.++++.+.+||+++|-..
T Consensus 147 ~~p~llllDEP~~gLD~--------~~~----~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 147 NEPKVLLLDEPLGALDL--------KLR----KDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred cCCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 68999999999987653 222 36777888887777999999998875
No 279
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.80 E-value=1.8e-08 Score=88.14 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=31.8
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 15 ~il~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~i~--G~~~~~~G 56 (218)
T cd03290 15 ATLSNINI-RIPTGQLTMIVGQVGCGKSSLLLAIL--GEMQTLEG 56 (218)
T ss_pred cceeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--ccCCCCCC
Confidence 34555555 78999999999999999999999765 44444433
No 280
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.80 E-value=1.4e-07 Score=83.22 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=36.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++. .. ...+.+.|+.++++.+.+||+++|-..
T Consensus 142 ~~p~vllLDEPt~~LD~--------~~----~~~l~~~l~~~~~~~~~tiii~sH~~~ 187 (230)
T TIGR02770 142 LEPPFLIADEPTTDLDV--------VN----QARVLKLLRELRQLFGTGILLITHDLG 187 (230)
T ss_pred cCCCEEEEcCCccccCH--------HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999999987653 22 236777888888777899999999765
No 281
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.80 E-value=1.9e-08 Score=100.95 Aligned_cols=139 Identities=18% Similarity=0.233 Sum_probs=79.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGL----- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~----- 183 (342)
.|+.+-- -+++|+.++|.|++|||||||+..++ ...++..| .++++... ..+...++ +..++
T Consensus 350 iL~~inl-~i~~G~~v~IvG~sGsGKSTLl~lL~--gl~~p~~G-----~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~ 418 (588)
T PRK13657 350 GVEDVSF-EAKPGQTVAIVGPTGAGKSTLINLLQ--RVFDPQSG-----RILIDGTDIRTVTRASLR---RNIAVVFQDA 418 (588)
T ss_pred eecceeE-EECCCCEEEEECCCCCCHHHHHHHHh--cCcCCCCC-----EEEECCEEhhhCCHHHHH---hheEEEecCc
Confidence 4555555 78999999999999999999999654 45554433 56666542 12222222 22221
Q ss_pred --ChhhhhcceeEeec-CCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEecc
Q 019381 184 --NGADVLENVAYARA-YNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDSA 227 (342)
Q Consensus 184 --~~~~~~~~i~~~~~-~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l 227 (342)
-..++.+|+.+.++ .+.+++...++.+ .+...-.+++++|+|++
T Consensus 419 ~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEp 498 (588)
T PRK13657 419 GLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498 (588)
T ss_pred ccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 12244455554432 1222222221111 11112268999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++-++.+ .+ ..+.+.|+.+. .+.|+|+++|-.+
T Consensus 499 ts~LD~~-------t~-----~~i~~~l~~~~--~~~tvIiitHr~~ 531 (588)
T PRK13657 499 TSALDVE-------TE-----AKVKAALDELM--KGRTTFIIAHRLS 531 (588)
T ss_pred ccCCCHH-------HH-----HHHHHHHHHHh--cCCEEEEEEecHH
Confidence 9987642 11 25666666553 3789999988754
No 282
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.80 E-value=1.2e-07 Score=85.67 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=36.7
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|+++.-++.. . ...+.+.|+.++++++.+||+++|-..
T Consensus 168 ~~p~lllLDEPt~~LD~~--------~----~~~~~~~l~~~~~~~~~tiiivsH~~~ 213 (268)
T PRK10419 168 VEPKLLILDEAVSNLDLV--------L----QAGVIRLLKKLQQQFGTACLFITHDLR 213 (268)
T ss_pred cCCCEEEEeCCCcccCHH--------H----HHHHHHHHHHHHHHcCcEEEEEECCHH
Confidence 689999999999877532 2 236777888888877999999999865
No 283
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.80 E-value=2.7e-08 Score=85.85 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=79.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEe---------------cCCCCC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID---------------AEGTFR----- 170 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~---------------~e~~~~----- 170 (342)
.+|.+.. -+++|+++.+.|++|+||||....++ ..++++.| .+-|.. -|..+.
T Consensus 17 av~~isf-~v~~G~i~GllG~NGAGKTTtfRmIL--glle~~~G----~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 17 AVDNISF-EVPPGEIFGLLGPNGAGKTTTFRMIL--GLLEPTEG----EITWNGGPLSQEIKNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred eecceee-eecCCeEEEeecCCCCCccchHHHHh--ccCCccCc----eEEEcCcchhhhhhhhcccChhhhccCccCcH
Confidence 4555655 79999999999999999999999654 45555444 233332 222221
Q ss_pred HHHHHHHHHHcCCChh-------hhhcceeEeecC--CHHHHHHHHHHHHHHhH--hcCceEEEEeccccccccccCCCc
Q 019381 171 PQRLLQIADRYGLNGA-------DVLENVAYARAY--NTDHQSRLLLEAASMMV--ETRFALMIVDSATALYRTDFSGRG 239 (342)
Q Consensus 171 ~~rl~~~~~~~~~~~~-------~~~~~i~~~~~~--~~~~~~~~l~~l~~~~~--~~~~~lvviD~l~~l~~~~~~~~~ 239 (342)
.+.++.++.--|++.. .++++..+.... ...++.+--.+-..++. .|.|.+||+|++.+-+++-
T Consensus 90 ~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPV----- 164 (300)
T COG4152 90 EDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV----- 164 (300)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChh-----
Confidence 1223333333344322 223333222111 11111111111111221 2889999999998876642
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Q 019381 240 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 277 (342)
Q Consensus 240 ~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~ 277 (342)
.. ..+.. .++++. +.|.|||+.+|.....+
T Consensus 165 --N~--elLk~---~I~~lk-~~GatIifSsH~Me~vE 194 (300)
T COG4152 165 --NV--ELLKD---AIFELK-EEGATIIFSSHRMEHVE 194 (300)
T ss_pred --hH--HHHHH---HHHHHH-hcCCEEEEecchHHHHH
Confidence 11 11222 334443 45999999999987544
No 284
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.80 E-value=2.3e-08 Score=100.00 Aligned_cols=139 Identities=22% Similarity=0.326 Sum_probs=79.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCC------
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLN------ 184 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~------ 184 (342)
.|+.+-. -+++|+.+.|.|++|+|||||+..++ ....+..| .++++... .+......+.+.+++-
T Consensus 347 il~~inl-~i~~G~~v~IvG~sGsGKSTLl~lL~--gl~~~~~G-----~I~i~g~~-i~~~~~~~~~~~i~~v~Q~~~l 417 (571)
T TIGR02203 347 ALDSISL-VIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSG-----QILLDGHD-LADYTLASLRRQVALVSQDVVL 417 (571)
T ss_pred cccCeeE-EecCCCEEEEECCCCCCHHHHHHHHH--hccCCCCC-----eEEECCEe-HHhcCHHHHHhhceEEccCccc
Confidence 3454444 68999999999999999999999654 45544433 56666532 1111111122222221
Q ss_pred -hhhhhcceeEeec--CCHHHHHHHH-----------------------------------HHHHHHhHhcCceEEEEec
Q 019381 185 -GADVLENVAYARA--YNTDHQSRLL-----------------------------------LEAASMMVETRFALMIVDS 226 (342)
Q Consensus 185 -~~~~~~~i~~~~~--~~~~~~~~~l-----------------------------------~~l~~~~~~~~~~lvviD~ 226 (342)
..++.+|+.+.++ .+.+++.+.+ .-++++ -.+++++++|+
T Consensus 418 f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal--l~~~~illLDE 495 (571)
T TIGR02203 418 FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL--LKDAPILILDE 495 (571)
T ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH--hcCCCEEEEeC
Confidence 1234445544432 2222222222 221222 26789999999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 227 ATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 227 l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++-++.+ .+ ..+.+.|+++++ +.|+|+++|-..
T Consensus 496 pts~LD~~-------~~-----~~i~~~L~~~~~--~~tiIiitH~~~ 529 (571)
T TIGR02203 496 ATSALDNE-------SE-----RLVQAALERLMQ--GRTTLVIAHRLS 529 (571)
T ss_pred ccccCCHH-------HH-----HHHHHHHHHHhC--CCEEEEEehhhH
Confidence 99987642 11 256667776643 689999988764
No 285
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.79 E-value=7e-08 Score=79.11 Aligned_cols=45 Identities=33% Similarity=0.432 Sum_probs=37.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
..|++|+.|+++.-++... ..+++..|+.+..+++.++++++|--
T Consensus 168 t~PrLvfMDEPTGGLDVSV------------QARLLDllrgLv~~l~la~viVTHDl 212 (258)
T COG4107 168 TRPRLVFMDEPTGGLDVSV------------QARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred cCCceEEecCCCCCcchhh------------HHHHHHHHHHHHHhcCceEEEEechh
Confidence 5799999999998765321 34788999999999999999999854
No 286
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.79 E-value=2.2e-08 Score=98.83 Aligned_cols=144 Identities=21% Similarity=0.265 Sum_probs=79.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHH-----HHHHcCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQ-----IADRYGL 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~-----~~~~~~~ 183 (342)
.|+.+.. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+.- .+...... +.+....
T Consensus 20 il~~vs~-~i~~Ge~~~liG~nGsGKSTLl~~i~--Gl~~p~~G-----~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~ 91 (510)
T PRK09700 20 ALKSVNL-TVYPGEIHALLGENGAGKSTLMKVLS--GIHEPTKG-----TITINNINYNKLDHKLAAQLGIGIIYQELSV 91 (510)
T ss_pred EeeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHc--CCcCCCcc-----EEEECCEECCCCCHHHHHHCCeEEEeecccc
Confidence 4666666 78999999999999999999999654 55554433 455554321 11111000 0111011
Q ss_pred Ch-hhhhcceeEee-------cC---CH----HHHHHHHHHH----------------------HHHhHhcCceEEEEec
Q 019381 184 NG-ADVLENVAYAR-------AY---NT----DHQSRLLLEA----------------------ASMMVETRFALMIVDS 226 (342)
Q Consensus 184 ~~-~~~~~~i~~~~-------~~---~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~ 226 (342)
.+ -.+.+++.+.. .. +. ....+.++.+ .+.....+++++++|+
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE 171 (510)
T PRK09700 92 IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE 171 (510)
T ss_pred cCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11 12223332210 00 00 0111112111 1112236899999999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 227 ATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 227 l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
+++.++. .. ...+.+.|++++++ +.|||+++|-...
T Consensus 172 Pt~~LD~--------~~----~~~l~~~l~~l~~~-g~tiiivsHd~~~ 207 (510)
T PRK09700 172 PTSSLTN--------KE----VDYLFLIMNQLRKE-GTAIVYISHKLAE 207 (510)
T ss_pred CCCCCCH--------HH----HHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 9998764 22 23677788888765 8999999997653
No 287
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.79 E-value=1.7e-08 Score=89.49 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=32.3
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 17 ~~l~~i~~-~i~~Ge~~~l~G~nGsGKSTLl~~i~--G~~~~~~G 58 (238)
T cd03249 17 PILKGLSL-TIPPGKTVALVGSSGCGKSTVVSLLE--RFYDPTSG 58 (238)
T ss_pred cceeceEE-EecCCCEEEEEeCCCCCHHHHHHHHh--ccCCCCCC
Confidence 35666555 68999999999999999999999655 45554433
No 288
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=4.6e-08 Score=85.16 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=30.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++| ++.|.|++|||||||+..++ ...++..|
T Consensus 15 ~l~~vs~-~i~~g-~~~i~G~nGsGKSTLl~~l~--Gl~~~~~G 54 (211)
T cd03264 15 ALDGVSL-TLGPG-MYGLLGPNGAGKTTLMRILA--TLTPPSSG 54 (211)
T ss_pred EEcceeE-EEcCC-cEEEECCCCCCHHHHHHHHh--CCCCCCcc
Confidence 4555555 68889 99999999999999999664 55554443
No 289
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.79 E-value=2.2e-08 Score=102.78 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=81.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCC-----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLN----- 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~----- 184 (342)
+.|+.+-- -+++|+.+.|.|++|||||||+..++ ...++..| .+++++.. ........+.+..++-
T Consensus 493 ~vL~~isl-~i~~Ge~vaIvG~sGsGKSTLlklL~--gl~~p~~G-----~I~idg~~-i~~~~~~~lr~~i~~v~Q~~~ 563 (710)
T TIGR03796 493 PLIENFSL-TLQPGQRVALVGGSGSGKSTIAKLVA--GLYQPWSG-----EILFDGIP-REEIPREVLANSVAMVDQDIF 563 (710)
T ss_pred CcccceeE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----EEEECCEe-HHHCCHHHHHhheeEEecCCh
Confidence 35666665 79999999999999999999999654 45554443 66776542 1111111222223221
Q ss_pred --hhhhhcceeEeec-CCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEeccc
Q 019381 185 --GADVLENVAYARA-YNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDSAT 228 (342)
Q Consensus 185 --~~~~~~~i~~~~~-~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l~ 228 (342)
..++.+|+.+..+ .+.+++.+.++.+ .+...-.+++++++|+++
T Consensus 564 lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEpt 643 (710)
T TIGR03796 564 LFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEAT 643 (710)
T ss_pred hhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcc
Confidence 1244455554332 2233332222211 111122689999999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.++.. .+ ..+.+.|++ .++|+|+++|-..
T Consensus 644 S~LD~~-------te-----~~i~~~l~~----~~~T~IiitHrl~ 673 (710)
T TIGR03796 644 SALDPE-------TE-----KIIDDNLRR----RGCTCIIVAHRLS 673 (710)
T ss_pred ccCCHH-------HH-----HHHHHHHHh----cCCEEEEEecCHH
Confidence 987642 22 245555553 4899999998754
No 290
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=6.1e-08 Score=83.83 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=73.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccC---CCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLP---LDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL---- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~---~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~---- 183 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...+ +..| .++++...-... . ....+..++
T Consensus 22 il~~~s~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~~~~~~~G-----~i~i~g~~~~~~-~-~~~~~~i~~~~q~ 91 (202)
T cd03233 22 ILKDFSG-VVKPGEMVLVLGRPGSGCSTLLKALA--NRTEGNVSVEG-----DIHYNGIPYKEF-A-EKYPGEIIYVSEE 91 (202)
T ss_pred eeeeEEE-EECCCcEEEEECCCCCCHHHHHHHhc--ccCCCCCCcce-----EEEECCEECccc-h-hhhcceEEEEecc
Confidence 4555555 78999999999999999999999755 4443 3332 455554321111 0 011111111
Q ss_pred ---Ch-hhhhcceeEee---------cCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHH
Q 019381 184 ---NG-ADVLENVAYAR---------AYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAK 250 (342)
Q Consensus 184 ---~~-~~~~~~i~~~~---------~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~ 250 (342)
.+ -.+.+++.+.. ..+.-+ .+.+..+.+ ...+|+++++|+++.-++. ..+ ..
T Consensus 92 ~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge-~qrl~lara--l~~~p~llllDEPt~~LD~--------~~~----~~ 156 (202)
T cd03233 92 DVHFPTLTVRETLDFALRCKGNEFVRGISGGE-RKRVSIAEA--LVSRASVLCWDNSTRGLDS--------STA----LE 156 (202)
T ss_pred cccCCCCcHHHHHhhhhhhccccchhhCCHHH-HHHHHHHHH--HhhCCCEEEEcCCCccCCH--------HHH----HH
Confidence 11 02222222110 011111 111222222 2367999999999997763 222 26
Q ss_pred HHHHHHHHHHHhCCEEEEE-ecc
Q 019381 251 FLRSLQKLADEFGVAVVIT-NQV 272 (342)
Q Consensus 251 i~~~Lk~la~~~~~~vi~~-~h~ 272 (342)
+.+.|+.++++.+.++|++ +|.
T Consensus 157 ~~~~l~~~~~~~~~t~ii~~~h~ 179 (202)
T cd03233 157 ILKCIRTMADVLKTTTFVSLYQA 179 (202)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCC
Confidence 7778888887767766655 444
No 291
>PF13479 AAA_24: AAA domain
Probab=98.77 E-value=1.7e-07 Score=81.63 Aligned_cols=168 Identities=21% Similarity=0.234 Sum_probs=95.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDH 202 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (342)
+-.++|+|+||+|||+|+..+ .+++||++|..... +..+ .+...+...+..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------------~k~l~id~E~g~~~--~~~~------------~~~~~i~i~s~~~ 54 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------------PKPLFIDTENGSDS--LKFL------------DDGDVIPITSWED 54 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------------CCeEEEEeCCCccc--hhhh------------cCCCeeCcCCHHH
Confidence 346899999999999999864 26999999987322 1111 0122334446666
Q ss_pred HHHHHHHHHHHhHhcCceEEEEecccccccc---ccC----------CCcchHHHHHHHH-HHHHHHHHHHHHhCCEEEE
Q 019381 203 QSRLLLEAASMMVETRFALMIVDSATALYRT---DFS----------GRGELSARQMHLA-KFLRSLQKLADEFGVAVVI 268 (342)
Q Consensus 203 ~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~---~~~----------~~~~~~~r~~~l~-~i~~~Lk~la~~~~~~vi~ 268 (342)
+.+.+..+... ..+.+.||||+++.+... ... +..+....+..+. .+.+.++.+.+..+..||+
T Consensus 55 ~~~~~~~l~~~--~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~ 132 (213)
T PF13479_consen 55 FLEALDELEED--EADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIF 132 (213)
T ss_pred HHHHHHHHHhc--cCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 66666554332 367899999999987321 111 0001012222233 3344445556668999999
Q ss_pred EeccccccC-CCcccC--CCCccccCccccccccceEEEEEee----cCCeEEEEEEeC
Q 019381 269 TNQVVAQVD-GSAIFA--GPQIKPIGGNIMAHASTTRLALRKG----RGEERICKVISS 320 (342)
Q Consensus 269 ~~h~~~~~~-~~~~~~--~~~~~p~~g~~~~~~~d~~l~l~~~----~~~~r~~~v~K~ 320 (342)
+.|.....+ ....+. .....+.....+...+|.+..+... ....|.+....+
T Consensus 133 tah~~~~~~~~~~~~~~~~~~l~~k~~~~l~~~~D~V~~l~~~~~~~~~~~R~~~~~~~ 191 (213)
T PF13479_consen 133 TAHAKEEEDEDGGKYTRYKPKLGKKVRNELPGWFDVVGRLRVETVDDETGKRVIYFQPS 191 (213)
T ss_pred EEEEEEEEcCCCCceeEEeeccChhHHhhhhecccEEEEEEEEEecCCCCceEEEECCC
Confidence 999877655 111110 1111223345677788888666632 123466655444
No 292
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=2.8e-08 Score=88.94 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=30.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLD 152 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~ 152 (342)
.|+.+-. -|.+|+++.|.|++|+|||||+..++ ...++.
T Consensus 19 il~~~s~-~i~~G~~~~i~G~nGsGKSTLl~~l~--Gl~~~~ 57 (251)
T PRK14249 19 VLKNINM-DFPERQITAIIGPSGCGKSTLLRALN--RMNDIV 57 (251)
T ss_pred EecceEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cccCcc
Confidence 4555555 68999999999999999999999765 444443
No 293
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.76 E-value=3.1e-08 Score=88.43 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=30.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPL 151 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~ 151 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++
T Consensus 16 ~l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--G~~~p 53 (247)
T TIGR00972 16 ALKNINL-DIPKNQVTALIGPSGCGKSTLLRSLN--RMNDL 53 (247)
T ss_pred eecceeE-EECCCCEEEEECCCCCCHHHHHHHHh--ccCCC
Confidence 4555554 78999999999999999999999654 44443
No 294
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.76 E-value=4e-08 Score=98.45 Aligned_cols=137 Identities=23% Similarity=0.334 Sum_probs=78.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCCC----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGLN---- 184 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~---- 184 (342)
.|+.+-- -+++|+.+.|.|++|||||||+..++ ...++..| .++++... ..+...+ .+..++-
T Consensus 355 iL~~inl-~i~~Ge~i~IvG~sGsGKSTLlklL~--gl~~p~~G-----~I~i~g~~i~~~~~~~~---~~~i~~~~Q~~ 423 (576)
T TIGR02204 355 ALDGLNL-TVRPGETVALVGPSGAGKSTLFQLLL--RFYDPQSG-----RILLDGVDLRQLDPAEL---RARMALVPQDP 423 (576)
T ss_pred cccceeE-EecCCCEEEEECCCCCCHHHHHHHHH--hccCCCCC-----EEEECCEEHHhcCHHHH---HHhceEEccCC
Confidence 4555544 78999999999999999999999765 44444433 55665431 1112221 1222221
Q ss_pred ---hhhhhcceeEeec-CCHHHHHHHH-----------------------------------HHHHHHhHhcCceEEEEe
Q 019381 185 ---GADVLENVAYARA-YNTDHQSRLL-----------------------------------LEAASMMVETRFALMIVD 225 (342)
Q Consensus 185 ---~~~~~~~i~~~~~-~~~~~~~~~l-----------------------------------~~l~~~~~~~~~~lvviD 225 (342)
..++.+|+.+.++ .+.+++.+.+ .-+++. -.+++++++|
T Consensus 424 ~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal--~~~~~ililD 501 (576)
T TIGR02204 424 VLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI--LKDAPILLLD 501 (576)
T ss_pred ccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH--HhCCCeEEEe
Confidence 1234445544332 1222222221 111222 2578999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 226 ~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++++.++.. . + ..+.+.|+.+.+ +.|+|+++|-..
T Consensus 502 Epts~lD~~-------~-~----~~i~~~l~~~~~--~~t~IiitH~~~ 536 (576)
T TIGR02204 502 EATSALDAE-------S-E----QLVQQALETLMK--GRTTLIIAHRLA 536 (576)
T ss_pred CcccccCHH-------H-H----HHHHHHHHHHhC--CCEEEEEecchH
Confidence 999987642 1 1 256666766643 789999988764
No 295
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.76 E-value=3e-08 Score=98.29 Aligned_cols=139 Identities=20% Similarity=0.243 Sum_probs=80.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCCC----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGLN---- 184 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~---- 184 (342)
.|+.+-. -+++|+.+.|+|++|||||||+..++ ...++..| .++++... .++... +.+..++-
T Consensus 337 il~~i~l-~i~~G~~~~ivG~sGsGKSTL~~ll~--g~~~~~~G-----~I~~~g~~i~~~~~~~---lr~~i~~v~Q~~ 405 (529)
T TIGR02857 337 ALRPVSF-TVPPGERVALVGPSGAGKSTLLNLLL--GFVDPTEG-----SIAVNGVPLADADADS---WRDQIAWVPQHP 405 (529)
T ss_pred cccceeE-EECCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----EEEECCEehhhCCHHH---HHhheEEEcCCC
Confidence 4666655 79999999999999999999999654 45554433 55666542 122222 22222221
Q ss_pred ---hhhhhcceeEeec-CCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEecc
Q 019381 185 ---GADVLENVAYARA-YNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDSA 227 (342)
Q Consensus 185 ---~~~~~~~i~~~~~-~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l 227 (342)
..++.+|+.+..+ .+.++..+.++.+ .+...-.+++++++|++
T Consensus 406 ~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ 485 (529)
T TIGR02857 406 FLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485 (529)
T ss_pred cccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1234455544322 1222222222111 11111267999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++-++.+ .+ ..+.+.|+.+. .+.|+|+++|-..
T Consensus 486 ts~lD~~-------~~-----~~i~~~l~~~~--~~~t~i~itH~~~ 518 (529)
T TIGR02857 486 TAHLDAE-------TE-----ALVTEALRALA--QGRTVLLVTHRLA 518 (529)
T ss_pred ccccCHH-------HH-----HHHHHHHHHhc--CCCEEEEEecCHH
Confidence 9987642 22 25556666553 4789999998654
No 296
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.76 E-value=1.4e-07 Score=82.96 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=31.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+.. -+.+|+++.|.|++|+|||||+..++ ...++..|
T Consensus 23 il~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~i~--G~~~~~~G 63 (224)
T TIGR02324 23 VLKNVSL-TVNAGECVALSGPSGAGKSTLLKSLY--ANYLPDSG 63 (224)
T ss_pred EEecceE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCC
Confidence 4566555 78999999999999999999999654 45554433
No 297
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.76 E-value=5.2e-08 Score=95.72 Aligned_cols=41 Identities=32% Similarity=0.378 Sum_probs=32.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 13 il~~vs~-~i~~Ge~~~liG~nGsGKSTLl~~l~--Gl~~p~~G 53 (491)
T PRK10982 13 ALDNVNL-KVRPHSIHALMGENGAGKSTLLKCLF--GIYQKDSG 53 (491)
T ss_pred eeeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHc--CCCCCCce
Confidence 4666665 78999999999999999999999654 55555443
No 298
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.76 E-value=9.1e-08 Score=96.52 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=37.6
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++|+|++++.++.. . ...+++.|++++++++.+||+++|-..
T Consensus 185 ~~P~lLllDEPt~~LD~~--------~----~~~l~~ll~~l~~~~g~tvi~itHdl~ 230 (623)
T PRK10261 185 CRPAVLIADEPTTALDVT--------I----QAQILQLIKVLQKEMSMGVIFITHDMG 230 (623)
T ss_pred CCCCEEEEeCCCCccCHH--------H----HHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 689999999999987642 2 237888888888888999999999755
No 299
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.76 E-value=2.7e-08 Score=87.51 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=33.3
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..|
T Consensus 28 ~~l~~is~-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~~~~G 69 (226)
T cd03248 28 LVLQDVSF-TLHPGEVTALVGPSGSGKSTVVALLE--NFYQPQGG 69 (226)
T ss_pred ccccceEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCcCCCCc
Confidence 45666666 79999999999999999999999654 55555444
No 300
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.75 E-value=3e-08 Score=87.13 Aligned_cols=143 Identities=22% Similarity=0.289 Sum_probs=83.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC--CCCceEEEecCCCC--CH--HHHHHHHHHcCCChh-hhhcc
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG--GEGKAMYIDAEGTF--RP--QRLLQIADRYGLNGA-DVLEN 191 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~--~~~~vl~i~~e~~~--~~--~rl~~~~~~~~~~~~-~~~~~ 191 (342)
.++.-.+|.|+|+||+|||++...++ ++..++.|. .++ -+++|.+... ++ .|+-..++...+.|. ++..|
T Consensus 20 ~~p~~GvTAlFG~SGsGKTslin~Ia--GL~rPdeG~I~lng-r~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSLINMIA--GLTRPDEGRIELNG-RVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred cCCCCceEEEecCCCCChhhHHHHHh--ccCCccccEEEECC-EEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 35555799999999999999999654 666666551 122 3345555432 11 222222332222222 34445
Q ss_pred eeEeecCC-HHHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCCCcchHHHHHHH
Q 019381 192 VAYARAYN-TDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHL 248 (342)
Q Consensus 192 i~~~~~~~-~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l 248 (342)
+.|-.... ..+...++..+ .....-..|+++.+|++-+-++. ..+
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~--------~RK---- 164 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL--------PRK---- 164 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc--------chh----
Confidence 54443332 11222221111 11111257999999998765542 111
Q ss_pred HHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 249 AKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 249 ~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
.+++-.|.++.++.+++|+.++|.....
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev 192 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEV 192 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHH
Confidence 3889999999999999999999987743
No 301
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.75 E-value=2.2e-07 Score=85.35 Aligned_cols=183 Identities=15% Similarity=0.200 Sum_probs=111.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH--HcCCChhhhh-------
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD--RYGLNGADVL------- 189 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~--~~~~~~~~~~------- 189 (342)
....|+..+|=|.||+|||+|++.+. +... ..++++|+|+-- ++.++.++.- .-.+++..++
T Consensus 6 ~~~~G~TLLIKG~PGTGKTtfaLelL-~~l~------~~~~v~YISTRV--d~d~vy~~y~~~~~~i~~~~vlDatQd~~ 76 (484)
T PF07088_consen 6 TQEPGQTLLIKGEPGTGKTTFALELL-NSLK------DHGNVMYISTRV--DQDTVYEMYPWIEESIDPTNVLDATQDPF 76 (484)
T ss_pred cCCCCcEEEEecCCCCCceeeehhhH-HHHh------ccCCeEEEEecc--CHHHHHHhhhhhccccChhhhhhhccchh
Confidence 35679999999999999999999875 4444 356899999974 4666654431 1111211111
Q ss_pred ----cceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCE
Q 019381 190 ----ENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVA 265 (342)
Q Consensus 190 ----~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~ 265 (342)
.............+.+.++++.. .....+|++||.-+++..-. .+ ...+ ..+..+.+.|-.+|+..++-
T Consensus 77 ~~~~~~~vp~~~l~~ds~~~f~~~i~~---~~k~~iI~~DSWdaiieyla-~~--~~~~-ed~e~l~~dLv~lard~g~~ 149 (484)
T PF07088_consen 77 ELPLDKDVPFERLDIDSFRDFVDKINE---AGKKPIIAFDSWDAIIEYLA-EE--HDEP-EDIETLTNDLVELARDMGIN 149 (484)
T ss_pred hccccccCcccccCHHHHHHHHHHhhh---cccCcEEEEecHHHHHHHhh-hh--hcCc-HHHHHHHHHHHHHHhhcCce
Confidence 01111122234444444543322 24577999999665543100 00 0111 12456666777888999999
Q ss_pred EEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---C-CeEEEEEEeCCCCCCee--EEEEEec
Q 019381 266 VVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---G-EERICKVISSPCLAEAE--ARFQISA 334 (342)
Q Consensus 266 vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---~-~~r~~~v~K~r~~~~~~--~~f~I~~ 334 (342)
+|++..... -..+++++|.++.|.... | ..|.+++.|-|..+-+. .+|...+
T Consensus 150 LIlVsEsa~-----------------~~~LdYivDGVVTL~v~~derGR~~R~L~LeKLRGV~I~q~~Y~fTL~n 207 (484)
T PF07088_consen 150 LILVSESAE-----------------NEPLDYIVDGVVTLQVKNDERGRTRRYLRLEKLRGVRIKQRLYPFTLAN 207 (484)
T ss_pred EEEEEecCC-----------------CCcchheeeeEEEEEeccccCCceEEEEEehhhcCcccCCccceEEeeC
Confidence 999976554 135789999999997332 2 46899999999765444 3555444
No 302
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.74 E-value=5.2e-08 Score=95.93 Aligned_cols=41 Identities=29% Similarity=0.431 Sum_probs=32.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+.. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 19 il~~isl-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~~G 59 (501)
T PRK11288 19 ALDDISF-DCRAGQVHALMGENGAGKSTLLKILS--GNYQPDAG 59 (501)
T ss_pred EEeeeeE-EEeCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCC
Confidence 4666666 79999999999999999999999654 55554443
No 303
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.74 E-value=2.6e-08 Score=90.19 Aligned_cols=42 Identities=31% Similarity=0.330 Sum_probs=32.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..|
T Consensus 21 ~il~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~~G 62 (272)
T PRK15056 21 TALRDASF-TVPGGSIAALVGVNGSGKSTLFKALM--GFVRLASG 62 (272)
T ss_pred EEEEeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCce
Confidence 34555555 78999999999999999999999664 55555444
No 304
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.74 E-value=6.2e-08 Score=96.39 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=32.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+-- -+++|+.+.|.|++|||||||+..++ ...++..|
T Consensus 332 ~~l~~~~~-~i~~G~~~~ivG~sGsGKSTL~~ll~--g~~~~~~G 373 (544)
T TIGR01842 332 PTLRGISF-RLQAGEALAIIGPSGSGKSTLARLIV--GIWPPTSG 373 (544)
T ss_pred cccccceE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 34666666 79999999999999999999999655 44554443
No 305
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.74 E-value=1.6e-07 Score=84.51 Aligned_cols=124 Identities=17% Similarity=0.237 Sum_probs=83.9
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHH-HHHHHcCCChhhhhcceeEeecCCHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLL-QIADRYGLNGADVLENVAYARAYNTDHQ 203 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (342)
-.+|+|+++.|||+++..++...-...+.++...+|+++..-...+..++. .++..++.+.. .. ...
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~---------~~---~~~ 130 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR---------PR---DRV 130 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC---------CC---CCH
Confidence 389999999999999999886543222222234589999876555555443 35555554421 11 112
Q ss_pred HHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Q 019381 204 SRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITN 270 (342)
Q Consensus 204 ~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~ 270 (342)
.+.-..+...+...+++++|||++..++.... .+ .+++++.||.+++++++++|++-
T Consensus 131 ~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~----qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 131 AKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RK----QREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred HHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HH----HHHHHHHHHHHhhccCCCeEEec
Confidence 23333445667778999999999999865321 11 35899999999999999999884
No 306
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.74 E-value=2.6e-08 Score=89.95 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=28.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -|++|+++.|.|++|||||||+..++.
T Consensus 34 il~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~G 67 (267)
T PRK14235 34 ALFDVDL-DIPEKTVTAFIGPSGCGKSTFLRCLNR 67 (267)
T ss_pred EEEEEEE-EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555555 789999999999999999999997653
No 307
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=3.5e-08 Score=97.22 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=31.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLP 150 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~ 150 (342)
..|+.+.. -+.+|+++.|.|++|||||||+..++ ...+
T Consensus 19 ~il~~isl-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~ 56 (506)
T PRK13549 19 KALDNVSL-KVRAGEIVSLCGENGAGKSTLMKVLS--GVYP 56 (506)
T ss_pred EeecceeE-EEeCCeEEEEECCCCCCHHHHHHHHh--CCCC
Confidence 35666666 78999999999999999999999765 4444
No 308
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.73 E-value=6.6e-08 Score=95.21 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=35.0
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++. .. ...+.+.|+.++++ +.+||+++|-..
T Consensus 413 ~~p~lllLDEPt~~LD~--------~~----~~~l~~~l~~l~~~-g~tviivsHd~~ 457 (501)
T PRK11288 413 EDMKVILLDEPTRGIDV--------GA----KHEIYNVIYELAAQ-GVAVLFVSSDLP 457 (501)
T ss_pred cCCCEEEEcCCCCCCCH--------hH----HHHHHHHHHHHHhC-CCEEEEECCCHH
Confidence 68999999999997763 22 23677777777654 899999999865
No 309
>PRK13409 putative ATPase RIL; Provisional
Probab=98.73 E-value=2.3e-08 Score=99.76 Aligned_cols=139 Identities=14% Similarity=0.205 Sum_probs=75.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC--CCceEEEecCCCC-CHHHHHHHHH----HcCCC--hhhhh
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG--EGKAMYIDAEGTF-RPQRLLQIAD----RYGLN--GADVL 189 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~--~~~vl~i~~e~~~-~~~rl~~~~~----~~~~~--~~~~~ 189 (342)
-+.+|+++.|.|++|+|||||+..++ ...++..|.- ..++.|+.-+... ....+.+... .++.. ..+++
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~--Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L 438 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLA--GVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEII 438 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHH
Confidence 67999999999999999999999765 5555544411 0122333322111 0001111110 01000 01111
Q ss_pred cceeE-------eecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 019381 190 ENVAY-------ARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF 262 (342)
Q Consensus 190 ~~i~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~ 262 (342)
+.+.+ +...+.-+. +.+. .+.....+++++++|++++.++. ..+ ..+.+.|++++++.
T Consensus 439 ~~l~l~~~~~~~~~~LSGGe~-QRva--iAraL~~~p~llLLDEPt~~LD~--------~~~----~~l~~~l~~l~~~~ 503 (590)
T PRK13409 439 KPLQLERLLDKNVKDLSGGEL-QRVA--IAACLSRDADLYLLDEPSAHLDV--------EQR----LAVAKAIRRIAEER 503 (590)
T ss_pred HHCCCHHHHhCCcccCCHHHH-HHHH--HHHHHhcCCCEEEEeCCccCCCH--------HHH----HHHHHHHHHHHHhC
Confidence 11111 011111111 1111 12223368999999999998763 332 37888899998888
Q ss_pred CCEEEEEecccc
Q 019381 263 GVAVVITNQVVA 274 (342)
Q Consensus 263 ~~~vi~~~h~~~ 274 (342)
+.+||+++|-..
T Consensus 504 g~tviivsHD~~ 515 (590)
T PRK13409 504 EATALVVDHDIY 515 (590)
T ss_pred CCEEEEEeCCHH
Confidence 999999999765
No 310
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.73 E-value=1.4e-07 Score=75.42 Aligned_cols=124 Identities=23% Similarity=0.259 Sum_probs=67.5
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDH 202 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (342)
+..+.|+||||+|||+++..++...... ...++|++.+........... . ...........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~~ 62 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP------GGGVIYIDGEDILEEVLDQLL--------L-----IIVGGKKASGS 62 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC------CCCEEEECCEEccccCHHHHH--------h-----hhhhccCCCCC
Confidence 6789999999999999999887655431 236999998865332221111 0 00000000011
Q ss_pred HHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Q 019381 203 QSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272 (342)
Q Consensus 203 ~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~ 272 (342)
.......+...+....+.+|++|++..+..... ............+.......+..+|++++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 63 GELRLRLALALARKLKPDVLILDEITSLLDAEQ-------EALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH-------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 111222333444445579999999998865321 100000000223444555667888888775
No 311
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.73 E-value=2.8e-07 Score=82.58 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=31.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+. -+.+|+++.|.|++|+|||||+..++ ...++..|
T Consensus 15 ~~l~~i~--~i~~Ge~~~IvG~nGsGKSTLlk~l~--Gl~~p~~G 55 (255)
T cd03236 15 FKLHRLP--VPREGQVLGLVGPNGIGKSTALKILA--GKLKPNLG 55 (255)
T ss_pred hhhhcCC--CCCCCCEEEEECCCCCCHHHHHHHHh--CCcCCCCc
Confidence 3566664 38899999999999999999999654 55555443
No 312
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.73 E-value=5.9e-08 Score=97.08 Aligned_cols=137 Identities=16% Similarity=0.224 Sum_probs=79.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGL----- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~----- 183 (342)
.|+.+-- -+++|+.+.|.|++|||||||+..++ ...++..| .+++++.. ..+...++ +..++
T Consensus 355 il~~i~~-~i~~G~~~aivG~sGsGKSTL~~ll~--g~~~p~~G-----~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~ 423 (574)
T PRK11160 355 VLKGLSL-QIKAGEKVALLGRTGCGKSTLLQLLT--RAWDPQQG-----EILLNGQPIADYSEAALR---QAISVVSQRV 423 (574)
T ss_pred ceecceE-EECCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----eEEECCEEhhhCCHHHHH---hheeEEcccc
Confidence 4666655 78999999999999999999999655 44444433 56666542 11222221 22221
Q ss_pred --ChhhhhcceeEeec-CCHHHHHHHH----------------------------------HHHHHHhHhcCceEEEEec
Q 019381 184 --NGADVLENVAYARA-YNTDHQSRLL----------------------------------LEAASMMVETRFALMIVDS 226 (342)
Q Consensus 184 --~~~~~~~~i~~~~~-~~~~~~~~~l----------------------------------~~l~~~~~~~~~~lvviD~ 226 (342)
-..++.+|+.+..+ .+.+++.+.+ .-++++ -.+++++++|+
T Consensus 424 ~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal--l~~~~ililDE 501 (574)
T PRK11160 424 HLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL--LHDAPLLLLDE 501 (574)
T ss_pred hhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeC
Confidence 11234445444322 1222222221 111222 26899999999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 227 ATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 227 l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++.++.+ .+ ..+.+.|+.+. .+.|+|+++|-..
T Consensus 502 ~ts~lD~~-------t~-----~~i~~~l~~~~--~~~tviiitHr~~ 535 (574)
T PRK11160 502 PTEGLDAE-------TE-----RQILELLAEHA--QNKTVLMITHRLT 535 (574)
T ss_pred CcccCCHH-------HH-----HHHHHHHHHHc--CCCEEEEEecChh
Confidence 99987642 22 25666666654 3789999988754
No 313
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.72 E-value=4.8e-08 Score=96.84 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=37.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++.++. .. ...+...|++++++++.+||+++|-..
T Consensus 442 ~~p~llllDEPt~~LD~--------~~----~~~l~~~l~~~~~~~~~tvi~vsHd~~ 487 (529)
T PRK15134 442 LKPSLIILDEPTSSLDK--------TV----QAQILALLKSLQQKHQLAYLFISHDLH 487 (529)
T ss_pred CCCCEEEeeCCccccCH--------HH----HHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 68999999999998764 22 237888888888888999999999765
No 314
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.72 E-value=2.4e-08 Score=79.85 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=76.0
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHH-HHHHHHHHcCCChhhhhcceeEeecCC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQ-RLLQIADRYGLNGADVLENVAYARAYN 199 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~-rl~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (342)
+.+.++.|.|+||+|||+++.+++.......... ...+++|++........ -...+++.++..... .
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---------~-- 69 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIK-NHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---------R-- 69 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHC-CCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---------T--
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhcc-CCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---------c--
Confidence 3567899999999999999999987654210000 03468888876443333 334556656544321 1
Q ss_pred HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Q 019381 200 TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272 (342)
Q Consensus 200 ~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~ 272 (342)
.....+.+.+...+...+..+||||++..+. . ..++..|+.++.+.++.+|++.+.
T Consensus 70 -~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~-~---------------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 -QTSDELRSLLIDALDRRRVVLLVIDEADHLF-S---------------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -S-HHHHHHHHHHHHHHCTEEEEEEETTHHHH-T---------------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred -CCHHHHHHHHHHHHHhcCCeEEEEeChHhcC-C---------------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 2223344555566666777899999998853 1 267777888888899999998765
No 315
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.3e-07 Score=81.05 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=32.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+.+|++.+|.||+|||||||+..++-.--.... .+-+.|+++
T Consensus 26 ~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt-----~G~I~~~Ge 68 (251)
T COG0396 26 TVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT-----EGEILFDGE 68 (251)
T ss_pred eEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEe-----cceEEECCc
Confidence 6899999999999999999999977643222222 235667766
No 316
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.72 E-value=7.1e-08 Score=96.43 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=35.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+-. -+++|+.+.|.|++|||||||+..++ ...++..| .++++..
T Consensus 330 ~l~~i~~-~i~~G~~~~ivG~sGsGKSTLl~ll~--g~~~p~~G-----~i~~~g~ 377 (569)
T PRK10789 330 ALENVNF-TLKPGQMLGICGPTGSGKSTLLSLIQ--RHFDVSEG-----DIRFHDI 377 (569)
T ss_pred cccCeeE-EECCCCEEEEECCCCCCHHHHHHHHh--cccCCCCC-----EEEECCE
Confidence 4555555 78999999999999999999999664 44555443 4555543
No 317
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.71 E-value=6.9e-08 Score=96.80 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=35.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+-- -+++|+.+.|.|++|||||||+..++ ...++..| .+++++.
T Consensus 350 ~l~~i~~-~i~~G~~~~ivG~sGsGKSTL~~ll~--g~~~~~~G-----~i~~~g~ 397 (585)
T TIGR01192 350 GVFDVSF-EAKAGQTVAIVGPTGAGKTTLINLLQ--RVYDPTVG-----QILIDGI 397 (585)
T ss_pred cccceeE-EEcCCCEEEEECCCCCCHHHHHHHHc--cCCCCCCC-----EEEECCE
Confidence 3555555 78999999999999999999999654 44454433 4555543
No 318
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.71 E-value=6.1e-08 Score=87.28 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=32.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+-. -+++|+++.|.|++|||||||+..++ +..++..|
T Consensus 38 ~il~~is~-~i~~Ge~~~liG~NGsGKSTLlk~L~--Gl~~p~~G 79 (264)
T PRK13546 38 FALDDISL-KAYEGDVIGLVGINGSGKSTLSNIIG--GSLSPTVG 79 (264)
T ss_pred EEEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCcCCCce
Confidence 34555555 78999999999999999999999664 55555544
No 319
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.71 E-value=8.7e-08 Score=94.82 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=37.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++.++. .. ...+.+.|+.++++++.+||+++|-..
T Consensus 444 ~~p~lLllDEPt~~LD~--------~~----~~~l~~~l~~l~~~~g~tvi~vsHd~~ 489 (520)
T TIGR03269 444 KEPRIVILDEPTGTMDP--------IT----KVDVTHSILKAREEMEQTFIIVSHDMD 489 (520)
T ss_pred cCCCEEEEeCCcccCCH--------HH----HHHHHHHHHHHHHHcCcEEEEEeCCHH
Confidence 68999999999998764 22 237788888888888999999999865
No 320
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.71 E-value=5e-08 Score=99.96 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=36.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
+.|+.+-- -+++|+.+.|+|++|||||||+..++ ...++..| .+++++.
T Consensus 495 ~vL~~isl-~i~~Ge~vaIvG~SGsGKSTLl~lL~--gl~~p~~G-----~I~idg~ 543 (711)
T TIGR00958 495 PVLKGLTF-TLHPGEVVALVGPSGSGKSTVAALLQ--NLYQPTGG-----QVLLDGV 543 (711)
T ss_pred ccccCceE-EEcCCCEEEEECCCCCCHHHHHHHHH--hccCCCCC-----EEEECCE
Confidence 35666655 79999999999999999999999665 44444333 5666654
No 321
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.71 E-value=1.4e-07 Score=93.35 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=38.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
.+|+++++|++++.++.. . ...++..|++++++.+.+||+++|-...
T Consensus 185 ~~p~lllLDEPt~~LD~~--------~----~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 185 KEPFLFLADEPTGTLDPQ--------T----AKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred cCCCEEEeeCCcccCCHH--------H----HHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 689999999999987642 2 2377888888888889999999997654
No 322
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.6e-07 Score=85.16 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=28.8
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
..|+.+-. -|++|+++.|.|++|+|||||+..++
T Consensus 35 ~il~~vs~-~i~~Ge~~~I~G~nGsGKSTLl~~l~ 68 (276)
T PRK14271 35 TVLDQVSM-GFPARAVTSLMGPTGSGKTTFLRTLN 68 (276)
T ss_pred EEeeeeEE-EEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34555555 78999999999999999999999765
No 323
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.70 E-value=3.5e-08 Score=88.37 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=28.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++.
T Consensus 21 il~~is~-~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 21 ALHDISL-EFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred eecceeE-EEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555555 789999999999999999999997764
No 324
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.70 E-value=8e-08 Score=93.06 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=32.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. .+++|+++.|.|++|+|||||+..++ +..++..|
T Consensus 39 IL~nVSf-sI~~GEivgIiGpNGSGKSTLLkiLa--GLl~P~sG 79 (549)
T PRK13545 39 ALNNISF-EVPEGEIVGIIGLNGSGKSTLSNLIA--GVTMPNKG 79 (549)
T ss_pred EEeeeEE-EEeCCCEEEEEcCCCCCHHHHHHHHh--CCCCCCce
Confidence 4666655 79999999999999999999999654 55555544
No 325
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.70 E-value=9.1e-08 Score=97.93 Aligned_cols=139 Identities=20% Similarity=0.272 Sum_probs=81.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCC-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGL----- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~----- 183 (342)
.|+.+-. -+++|+.+.|+|++|||||||+..++ ...++..| .+++++.. .++...++ +..++
T Consensus 472 il~~i~l-~i~~G~~vaivG~sGsGKSTL~~ll~--g~~~p~~G-----~I~idg~~i~~~~~~~~r---~~i~~v~q~~ 540 (694)
T TIGR01846 472 VLSNLNL-DIKPGEFIGIVGPSGSGKSTLTKLLQ--RLYTPQHG-----QVLVDGVDLAIADPAWLR---RQMGVVLQEN 540 (694)
T ss_pred ccccceE-EECCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----eEEECCEehhhCCHHHHH---HhCeEEccCC
Confidence 4666555 78999999999999999999999654 44444433 66676542 12222222 22221
Q ss_pred --ChhhhhcceeEeec-CCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEecc
Q 019381 184 --NGADVLENVAYARA-YNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDSA 227 (342)
Q Consensus 184 --~~~~~~~~i~~~~~-~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l 227 (342)
-..++.+|+.+..+ .+.+++.+.++.+ .+...-.+++++++|++
T Consensus 541 ~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEp 620 (694)
T TIGR01846 541 VLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEA 620 (694)
T ss_pred eehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 12244455544322 2222222222111 11112268999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++-++.+ .+ ..+.+.|+.+. .+.|+|+++|-..
T Consensus 621 ts~LD~~-------~~-----~~i~~~l~~~~--~~~t~i~itH~~~ 653 (694)
T TIGR01846 621 TSALDYE-------SE-----ALIMRNMREIC--RGRTVIIIAHRLS 653 (694)
T ss_pred CcCCCHH-------HH-----HHHHHHHHHHh--CCCEEEEEeCChH
Confidence 9987642 21 25666776663 3789999998654
No 326
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=3.2e-08 Score=88.26 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+.+|+++.|+|++|+|||||+..++
T Consensus 17 ~l~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (246)
T PRK14269 17 ALFDINM-QIEQNKITALIGASGCGKSTFLRCFN 49 (246)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555 78999999999999999999999765
No 327
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=2.5e-07 Score=93.52 Aligned_cols=142 Identities=22% Similarity=0.244 Sum_probs=74.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC----CCCceEEEecCC--CCCH-HHHHHHHHHcCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG----GEGKAMYIDAEG--TFRP-QRLLQIADRYGL 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~----~~~~vl~i~~e~--~~~~-~rl~~~~~~~~~ 183 (342)
.|+.+.. -|.+|+++.|.|++|||||||+..++ ...++..|. .+.++.|+.-.. .+.. ..+......+..
T Consensus 327 il~~isl-~i~~Ge~~~l~G~NGsGKSTLlk~l~--G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~ 403 (638)
T PRK10636 327 ILDSIKL-NLVPGSRIGLLGRNGAGKSTLIKLLA--GELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAP 403 (638)
T ss_pred eeccceE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCc
Confidence 3454444 78999999999999999999999765 555555552 122455665431 1111 111111111110
Q ss_pred --Ch---hhhhcceeEe--------ecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHH
Q 019381 184 --NG---ADVLENVAYA--------RAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAK 250 (342)
Q Consensus 184 --~~---~~~~~~i~~~--------~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~ 250 (342)
.. ..++..+.+. ...+.-+. ..+. .+.+...+++++|+|+++..++.. . ...
T Consensus 404 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGek-qRl~--La~~l~~~p~lLlLDEPt~~LD~~--------~----~~~ 468 (638)
T PRK10636 404 QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEK-ARLV--LALIVWQRPNLLLLDEPTNHLDLD--------M----RQA 468 (638)
T ss_pred hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHH-HHHH--HHHHHhcCCCEEEEcCCCCCCCHH--------H----HHH
Confidence 00 1122222221 01111111 1111 122233689999999999987642 2 124
Q ss_pred HHHHHHHHHHHhCCEEEEEecccc
Q 019381 251 FLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 251 i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+...|+.+ +.|||+++|-..
T Consensus 469 l~~~L~~~----~gtvi~vSHd~~ 488 (638)
T PRK10636 469 LTEALIDF----EGALVVVSHDRH 488 (638)
T ss_pred HHHHHHHc----CCeEEEEeCCHH
Confidence 55555544 459999999765
No 328
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.69 E-value=4.3e-07 Score=80.73 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=34.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++.++.. . ...+.+.|+.+++ .+.|||+++|-..
T Consensus 161 ~~p~llllDEPt~~LD~~--------~----~~~l~~~l~~~~~-~~~tvi~vsH~~~ 205 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDID--------A----LKIVAEGINRLRE-PDRSFLIITHYQR 205 (243)
T ss_pred cCCCEEEecCCcccCCHH--------H----HHHHHHHHHHHHH-CCcEEEEEEecHH
Confidence 689999999999987642 2 2367777777765 4789999998765
No 329
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=5.8e-08 Score=87.80 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=28.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -|.+|+++.|.|++|||||||+..++
T Consensus 28 il~~is~-~i~~Ge~~~l~G~nGsGKSTLl~~l~ 60 (269)
T PRK14259 28 AVKNVFC-DIPRGKVTALIGPSGCGKSTVLRSLN 60 (269)
T ss_pred EEcceEE-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4666665 78999999999999999999999765
No 330
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.69 E-value=3e-07 Score=91.59 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=32.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-- -+++|+.+.|.|++|||||||+..++ ...++..|
T Consensus 338 ~l~~i~~-~i~~G~~~aivG~sGsGKSTL~~ll~--g~~~~~~G 378 (547)
T PRK10522 338 SVGPINL-TIKRGELLFLIGGNGSGKSTLAMLLT--GLYQPQSG 378 (547)
T ss_pred EEecceE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCe
Confidence 4555555 78999999999999999999999655 55555444
No 331
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.68 E-value=1.5e-07 Score=78.67 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=53.0
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQS 204 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (342)
++.|.|++|||||+|+.+++.. .+.+++|+++...+..+--..+.......+.. .... .....+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---------~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~----w~t~--E~~~~l~ 65 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---------LGGPVTYIATAEAFDDEMAERIARHRKRRPAH----WRTI--ETPRDLV 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---------cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCC----ceEe--ecHHHHH
Confidence 4789999999999999999754 24579999999877653222222111111111 1111 1111222
Q ss_pred HHHHHHHHHhHhc-CceEEEEecccccccccc
Q 019381 205 RLLLEAASMMVET-RFALMIVDSATALYRTDF 235 (342)
Q Consensus 205 ~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~ 235 (342)
+. +... +.++|+||+++.+.....
T Consensus 66 ~~-------l~~~~~~~~VLIDclt~~~~n~l 90 (169)
T cd00544 66 SA-------LKELDPGDVVLIDCLTLWVTNLL 90 (169)
T ss_pred HH-------HHhcCCCCEEEEEcHhHHHHHhC
Confidence 22 2222 567999999999877544
No 332
>PLN03130 ABC transporter C family member; Provisional
Probab=98.68 E-value=5e-08 Score=107.37 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=84.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh---
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA--- 186 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~--- 186 (342)
+.|+.+.- -+++|+.++|+|++|||||||+..+. ...++.. +.++||+.+ .....+..+.+++++-++
T Consensus 1253 ~VL~~is~-~I~~GekVaIVGrSGSGKSTLl~lL~--rl~~p~~-----G~I~IDG~d-I~~i~l~~LR~~IsiVpQdp~ 1323 (1622)
T PLN03130 1253 PVLHGLSF-EISPSEKVGIVGRTGAGKSSMLNALF--RIVELER-----GRILIDGCD-ISKFGLMDLRKVLGIIPQAPV 1323 (1622)
T ss_pred ceecceeE-EEcCCCEEEEECCCCCCHHHHHHHHh--CcCCCCC-----ceEEECCEe-cccCCHHHHHhccEEECCCCc
Confidence 35666666 79999999999999999999999654 3444433 367887753 121112222233332221
Q ss_pred ----hhhcceeEeecCCHHHHHHHHH-----------------------------------HHHHHhHhcCceEEEEecc
Q 019381 187 ----DVLENVAYARAYNTDHQSRLLL-----------------------------------EAASMMVETRFALMIVDSA 227 (342)
Q Consensus 187 ----~~~~~i~~~~~~~~~~~~~~l~-----------------------------------~l~~~~~~~~~~lvviD~l 227 (342)
++.+|+......+.+++.+.++ .+++++ .+++++|+|+.
T Consensus 1324 LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL--r~p~ILILDEA 1401 (1622)
T PLN03130 1324 LFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL--RRSKILVLDEA 1401 (1622)
T ss_pred cccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH--cCCCEEEEECC
Confidence 3445554443334444333332 222332 57899999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.++.+ .++ .+.+.|++.. .++|||+++|--.
T Consensus 1402 TSaLD~~-------Te~-----~Iq~~I~~~~--~~~TvI~IAHRL~ 1434 (1622)
T PLN03130 1402 TAAVDVR-------TDA-----LIQKTIREEF--KSCTMLIIAHRLN 1434 (1622)
T ss_pred CCCCCHH-------HHH-----HHHHHHHHHC--CCCEEEEEeCChH
Confidence 9987642 221 4555565543 3799999999554
No 333
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.68 E-value=3.2e-08 Score=87.08 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=28.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
..|+.+.. -+.+|+++.|+|++|||||||+..++
T Consensus 21 ~~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLlk~l~ 54 (226)
T cd03234 21 RILNDVSL-HVESGQVMAILGSSGSGKTTLLDAIS 54 (226)
T ss_pred ccccCceE-EEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 34565555 78999999999999999999999765
No 334
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=1.4e-07 Score=92.84 Aligned_cols=140 Identities=18% Similarity=0.263 Sum_probs=80.8
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCC---C
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGL---N 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~---~ 184 (342)
+.|+++.- -++||++++++||+|+||||++.-+- . ...|.. +.+.+|+.. .++...++ +..+. +
T Consensus 482 ~Vlk~lsf-ti~pGe~vALVGPSGsGKSTiasLL~-r-fY~Pts-----G~IllDG~~i~~~~~~~lr---~~Ig~V~QE 550 (716)
T KOG0058|consen 482 PVLKNLSF-TIRPGEVVALVGPSGSGKSTIASLLL-R-FYDPTS-----GRILLDGVPISDINHKYLR---RKIGLVGQE 550 (716)
T ss_pred hhhcCcee-eeCCCCEEEEECCCCCCHHHHHHHHH-H-hcCCCC-----CeEEECCeehhhcCHHHHH---HHeeeeecc
Confidence 46777777 89999999999999999999998543 2 333333 366677652 12222222 33332 1
Q ss_pred h----hhhhcceeEeecCC-HHHHH-----------------------------------HHHHHHHHHhHhcCceEEEE
Q 019381 185 G----ADVLENVAYARAYN-TDHQS-----------------------------------RLLLEAASMMVETRFALMIV 224 (342)
Q Consensus 185 ~----~~~~~~i~~~~~~~-~~~~~-----------------------------------~~l~~l~~~~~~~~~~lvvi 224 (342)
| -++.+||.|-.... .+++. +.+..++++ -.+|+++|+
T Consensus 551 PvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL--lr~P~VLIL 628 (716)
T KOG0058|consen 551 PVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL--LRNPRVLIL 628 (716)
T ss_pred ceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH--hcCCCEEEE
Confidence 1 13445555433211 11111 222222333 378999999
Q ss_pred eccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 225 DSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 225 D~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
|+.++.++.+- +. .+-..|.++.+ +-|||++.|--.-+
T Consensus 629 DEATSALDaeS-------E~-----lVq~aL~~~~~--~rTVlvIAHRLSTV 666 (716)
T KOG0058|consen 629 DEATSALDAES-------EY-----LVQEALDRLMQ--GRTVLVIAHRLSTV 666 (716)
T ss_pred echhhhcchhh-------HH-----HHHHHHHHhhc--CCeEEEEehhhhHh
Confidence 99999887542 11 22234444444 37888888865533
No 335
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.67 E-value=1.3e-07 Score=93.18 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=35.4
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++.++.. . ...+.+.|+.++++ +.+||+++|-..
T Consensus 412 ~~p~lllLDEPt~~LD~~--------~----~~~l~~~l~~~~~~-g~tviivtHd~~ 456 (501)
T PRK10762 412 TRPKVLILDEPTRGVDVG--------A----KKEIYQLINQFKAE-GLSIILVSSEMP 456 (501)
T ss_pred hCCCEEEEcCCCCCCCHh--------H----HHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence 679999999999987642 2 23677788888765 899999999765
No 336
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.5e-07 Score=90.75 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=33.3
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+-. -|.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 15 ~il~~vsl-~i~~Ge~~~liG~NGsGKSTLl~~l~--Gl~~p~~G 56 (530)
T PRK15064 15 PLFENISV-KFGGGNRYGLIGANGCGKSTFMKILG--GDLEPSAG 56 (530)
T ss_pred EeEeCCEE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 45666666 79999999999999999999999665 55555544
No 337
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=7.3e-08 Score=86.40 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=28.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++
T Consensus 22 il~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 22 ALNNINI-KILKNSITALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred eecceee-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555 78999999999999999999999765
No 338
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.67 E-value=7.5e-08 Score=86.49 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=31.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++ ...++..|
T Consensus 36 il~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~~~~G 76 (257)
T cd03288 36 VLKHVKA-YIKPGQKVGICGRTGSGKSSLSLAFF--RMVDIFDG 76 (257)
T ss_pred ceeEEEE-EEcCCCEEEEECCCCCCHHHHHHHHH--cccCCCCC
Confidence 4555555 78999999999999999999999765 44454443
No 339
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.67 E-value=7.2e-08 Score=94.92 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=34.6
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++.++.. . ...+.+.|+.++++ +.+||+++|-..
T Consensus 420 ~~p~lllLDEPt~~LD~~--------~----~~~l~~~l~~l~~~-g~tviivsHd~~ 464 (500)
T TIGR02633 420 TNPRVLILDEPTRGVDVG--------A----KYEIYKLINQLAQE-GVAIIVVSSELA 464 (500)
T ss_pred hCCCEEEEcCCCCCcCHh--------H----HHHHHHHHHHHHhC-CCEEEEECCCHH
Confidence 679999999999987642 2 23666777777765 899999999765
No 340
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.67 E-value=3.6e-07 Score=90.58 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=37.6
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
.+|+++++|++++.++. .. ...+.+.|++++++++.+||+++|-...
T Consensus 173 ~~p~llllDEPt~~LD~--------~~----~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 219 (529)
T PRK15134 173 TRPELLIADEPTTALDV--------SV----QAQILQLLRELQQELNMGLLFITHNLSI 219 (529)
T ss_pred cCCCEEEEcCCCCccCH--------HH----HHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence 68999999999998764 22 2377888888888779999999997653
No 341
>PLN03232 ABC transporter C family member; Provisional
Probab=98.67 E-value=5.9e-08 Score=106.48 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=82.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCCh----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNG---- 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~---- 185 (342)
+.|+.+.- -+++|+.++|+|++|||||||+..+. ...++.. +.++||+.+ ........+.+++++-+
T Consensus 1250 ~vL~~isl-~I~~GekvaIVG~SGSGKSTL~~lL~--rl~~p~~-----G~I~IdG~d-i~~i~~~~lR~~i~iVpQdp~ 1320 (1495)
T PLN03232 1250 PVLHGLSF-FVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEK-----GRIMIDDCD-VAKFGLTDLRRVLSIIPQSPV 1320 (1495)
T ss_pred cccccceE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCcCCC-----ceEEECCEE-hhhCCHHHHHhhcEEECCCCe
Confidence 35666666 79999999999999999999999654 3444433 367787653 11111222223333221
Q ss_pred ---hhhhcceeEeecCCHHHHHHHHH-----------------------------------HHHHHhHhcCceEEEEecc
Q 019381 186 ---ADVLENVAYARAYNTDHQSRLLL-----------------------------------EAASMMVETRFALMIVDSA 227 (342)
Q Consensus 186 ---~~~~~~i~~~~~~~~~~~~~~l~-----------------------------------~l~~~~~~~~~~lvviD~l 227 (342)
.++.+|+......+.+++.+.++ -+++++ .+++++|+|+.
T Consensus 1321 LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL--r~~~ILILDEA 1398 (1495)
T PLN03232 1321 LFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL--RRSKILVLDEA 1398 (1495)
T ss_pred eeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH--hCCCEEEEECC
Confidence 13444554433333333333322 222332 57899999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.++.+ .++ .+.+.|++.. .++|||+++|--.
T Consensus 1399 TSaLD~~-------Te~-----~Iq~~L~~~~--~~~TvI~IAHRl~ 1431 (1495)
T PLN03232 1399 TASVDVR-------TDS-----LIQRTIREEF--KSCTMLVIAHRLN 1431 (1495)
T ss_pred cccCCHH-------HHH-----HHHHHHHHHc--CCCEEEEEeCCHH
Confidence 9987642 221 3444555443 3799999999654
No 342
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=9.7e-08 Score=94.14 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=35.0
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++.. . ...+.+.|+.++++ +.|||+++|-..
T Consensus 422 ~~p~lllLDEPt~~LD~~--------~----~~~l~~~l~~l~~~-g~tvi~~sHd~~ 466 (506)
T PRK13549 422 LNPKILILDEPTRGIDVG--------A----KYEIYKLINQLVQQ-GVAIIVISSELP 466 (506)
T ss_pred hCCCEEEEcCCCCCcCHh--------H----HHHHHHHHHHHHHC-CCEEEEECCCHH
Confidence 679999999999987642 2 23677777777765 899999999765
No 343
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.66 E-value=1e-07 Score=93.84 Aligned_cols=38 Identities=32% Similarity=0.419 Sum_probs=30.9
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLP 150 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~ 150 (342)
..|+.+-. -+++|+++.|.|++|||||||+..++ ...+
T Consensus 15 ~il~~isl-~i~~Ge~~~liG~nGsGKSTLl~~i~--G~~~ 52 (500)
T TIGR02633 15 KALDGIDL-EVRPGECVGLCGENGAGKSTLMKILS--GVYP 52 (500)
T ss_pred EeecceEE-EEeCCcEEEEECCCCCCHHHHHHHHh--CCCC
Confidence 34666666 79999999999999999999999765 4444
No 344
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.65 E-value=1.6e-07 Score=94.00 Aligned_cols=140 Identities=24% Similarity=0.276 Sum_probs=82.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCCC---
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGLN--- 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~--- 184 (342)
+.|+++.- .+++|+.++|+|++||||||++..++ ....+.. +.+++|+.+ .++...++ +..++-
T Consensus 343 ~vl~~is~-~i~~Ge~vaiVG~sGsGKSTl~~LL~--r~~~~~~-----G~I~idg~dI~~i~~~~lr---~~I~~V~Qd 411 (567)
T COG1132 343 PVLKDISF-SIEPGEKVAIVGPSGSGKSTLIKLLL--RLYDPTS-----GEILIDGIDIRDISLDSLR---KRIGIVSQD 411 (567)
T ss_pred ccccCceE-EEcCCCEEEEECCCCCCHHHHHHHHh--ccCCCCC-----CeEEECCEehhhcCHHHHH---HhccEEccc
Confidence 34666666 79999999999999999999999654 3333322 366665431 12233222 233321
Q ss_pred ----hhhhhcceeEeecC-CHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEec
Q 019381 185 ----GADVLENVAYARAY-NTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDS 226 (342)
Q Consensus 185 ----~~~~~~~i~~~~~~-~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~ 226 (342)
..++.+|+.+..+. +.+++.+.++.+ .+...-.+++++|+|+
T Consensus 412 ~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDE 491 (567)
T COG1132 412 PLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE 491 (567)
T ss_pred ceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 13456666666552 334444333322 1111125789999999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 227 ATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 227 l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.++-++.+ .+ ..+.+.++.+.+ +.|+++++|--+
T Consensus 492 aTSalD~~-------tE-----~~I~~~l~~l~~--~rT~iiIaHRls 525 (567)
T COG1132 492 ATSALDTE-------TE-----ALIQDALKKLLK--GRTTLIIAHRLS 525 (567)
T ss_pred cccccCHH-------hH-----HHHHHHHHHHhc--CCEEEEEeccHh
Confidence 99987653 22 256666665553 346666777543
No 345
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.65 E-value=8.8e-08 Score=94.48 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=35.3
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++.-++.. . ...+...|++++++ +.+||+++|-..
T Consensus 420 ~~p~lLlLDEPt~gLD~~--------~----~~~l~~~l~~l~~~-g~tiIivsHd~~ 464 (510)
T PRK15439 420 ASPQLLIVDEPTRGVDVS--------A----RNDIYQLIRSIAAQ-NVAVLFISSDLE 464 (510)
T ss_pred hCCCEEEECCCCcCcChh--------H----HHHHHHHHHHHHhC-CCEEEEECCCHH
Confidence 679999999999987642 2 23677778887764 899999999865
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.65 E-value=6e-07 Score=90.87 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=31.9
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+.. -|.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 334 il~~vsl-~i~~Ge~~~l~G~NGsGKSTLlk~l~--G~~~p~~G 374 (635)
T PRK11147 334 LVKDFSA-QVQRGDKIALIGPNGCGKTTLLKLML--GQLQADSG 374 (635)
T ss_pred EEcCcEE-EEcCCCEEEEECCCCCcHHHHHHHHh--CCCCCCCc
Confidence 4555544 78999999999999999999999765 45555544
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=4.5e-07 Score=91.67 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=33.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+.. .|.+|+++.|.|++|||||||+..++ ...+++.|
T Consensus 15 ~~l~~vs~-~i~~Ge~v~LvG~NGsGKSTLLkiL~--G~~~pd~G 56 (638)
T PRK10636 15 VLLDNATA-TINPGQKVGLVGKNGCGKSTLLALLK--NEISADGG 56 (638)
T ss_pred eeecCcEE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 35666666 79999999999999999999999655 55555555
No 348
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.65 E-value=5.5e-07 Score=74.55 Aligned_cols=155 Identities=22% Similarity=0.355 Sum_probs=87.6
Q ss_pred HhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC------CCCHHHHHHHHHHcC--CC
Q 019381 113 DKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG------TFRPQRLLQIADRYG--LN 184 (342)
Q Consensus 113 D~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~------~~~~~rl~~~~~~~~--~~ 184 (342)
+.+.. .+..|+...|.|.+|||||||+..++ +..+|..| -+.|+.+. .+...+++.+++.-+ ++
T Consensus 30 ~~vSF-tL~~~QTlaiIG~NGSGKSTLakMla--Gmi~PTsG-----~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~N 101 (267)
T COG4167 30 KPVSF-TLREGQTLAIIGENGSGKSTLAKMLA--GMIEPTSG-----EILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101 (267)
T ss_pred cceEE-EecCCcEEEEEccCCCcHhHHHHHHh--cccCCCCc-----eEEECCccccccchHhhhhheeeeecCCccccC
Confidence 33444 68889999999999999999999765 66666654 34444331 112233333332110 11
Q ss_pred hh----hhhcc-eeEeecCCH-----------------------------HHHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 185 GA----DVLEN-VAYARAYNT-----------------------------DHQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 185 ~~----~~~~~-i~~~~~~~~-----------------------------~~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
|. .+++. +......+. ..+.+....+++++ ..|++||.|+.-.-
T Consensus 102 PRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALI--L~P~iIIaDeAl~~ 179 (267)
T COG4167 102 PRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI--LRPKIIIADEALAS 179 (267)
T ss_pred hhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHh--cCCcEEEehhhhhh
Confidence 10 11100 000000000 01111122222322 57999999986554
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEee
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKG 308 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~ 308 (342)
++ +.-| .++++..-.+..++|+..|.++|.-. .+.|++|.++.+..+
T Consensus 180 LD--------~smr----sQl~NL~LeLQek~GiSyiYV~QhlG-------------------~iKHi~D~viVM~EG 226 (267)
T COG4167 180 LD--------MSMR----SQLINLMLELQEKQGISYIYVTQHIG-------------------MIKHISDQVLVMHEG 226 (267)
T ss_pred cc--------HHHH----HHHHHHHHHHHHHhCceEEEEechhh-------------------HhhhhcccEEEEecC
Confidence 33 2333 36777788889999999999877532 466889999988754
No 349
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.7e-07 Score=89.33 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=88.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec-CC-CCCHHHHHHHH----HHcCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA-EG-TFRPQRLLQIA----DRYGL 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~-e~-~~~~~rl~~~~----~~~~~ 183 (342)
+.|+.+.. -+.+|+-+.|.|++||||||++..++. +..+.+| .+-++. +. ..+...+++.. ++..+
T Consensus 352 ~~L~~~~l-~l~~GEkvAIlG~SGsGKSTllqLl~~--~~~~~~G-----~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl 423 (573)
T COG4987 352 KALKNFNL-TLAQGEKVAILGRSGSGKSTLLQLLAG--AWDPQQG-----SITLNGVEIASLDEQALRETISVLTQRVHL 423 (573)
T ss_pred chhhccce-eecCCCeEEEECCCCCCHHHHHHHHHh--ccCCCCC-----eeeECCcChhhCChhhHHHHHhhhccchHH
Confidence 46777666 899999999999999999999997664 3444433 333433 21 12333233332 22223
Q ss_pred ChhhhhcceeEeecC-CHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEecccc
Q 019381 184 NGADVLENVAYARAY-NTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 184 ~~~~~~~~i~~~~~~-~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l~~ 229 (342)
-..++.+|+....+. +.+++.+.++++ .+.+.-++..++++|+++.
T Consensus 424 F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTe 503 (573)
T COG4987 424 FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTE 503 (573)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcc
Confidence 333566666665543 233444443322 1222225889999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 277 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~ 277 (342)
-+++. .++ +++..|..-++ +.|+|+++|--...+
T Consensus 504 gLD~~-------TE~-----~vL~ll~~~~~--~kTll~vTHrL~~le 537 (573)
T COG4987 504 GLDPI-------TER-----QVLALLFEHAE--GKTLLMVTHRLRGLE 537 (573)
T ss_pred cCChh-------hHH-----HHHHHHHHHhc--CCeEEEEecccccHh
Confidence 77643 333 56777765554 789999998876443
No 350
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.7e-07 Score=82.47 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=28.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++.
T Consensus 18 ~l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (249)
T PRK14253 18 ALKSINL-PIPARQVTALIGPSGCGKSTLLRCLNR 51 (249)
T ss_pred eeecceE-EecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555555 789999999999999999999997653
No 351
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=9.3e-08 Score=85.47 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=28.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++
T Consensus 18 ~l~~is~-~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14247 18 VLDGVNL-EIPDNTITALMGPSGSGKSTLLRVFN 50 (250)
T ss_pred eeeccee-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555 78999999999999999999999765
No 352
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=6.7e-08 Score=86.99 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=28.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++
T Consensus 23 ~l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (261)
T PRK14263 23 AVRDSHV-PIRKNEITGFIGPSGCGKSTVLRSLN 55 (261)
T ss_pred EEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4565555 79999999999999999999999654
No 353
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.64 E-value=1.5e-07 Score=102.84 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=35.9
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEe
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~ 164 (342)
+.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++
T Consensus 399 ~vL~~isl-~i~~Ge~vaIvG~SGsGKSTLl~lL~--gl~~p~~G-----~I~i~ 445 (1466)
T PTZ00265 399 EIYKDLNF-TLTEGKTYAFVGESGCGKSTILKLIE--RLYDPTEG-----DIIIN 445 (1466)
T ss_pred ceeccceE-EEcCCCEEEEECCCCCCHHHHHHHHH--HhccCCCC-----eEEEe
Confidence 35677666 79999999999999999999999765 34444433 56674
No 354
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.64 E-value=7.5e-08 Score=86.08 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=28.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++.
T Consensus 18 ~l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 18 ALKKINL-DIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred eeecceE-EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4555555 688999999999999999999997653
No 355
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.1e-07 Score=85.39 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=28.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++
T Consensus 27 il~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 27 ALKNVSM-QIPKNSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566555 78999999999999999999999765
No 356
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.1e-07 Score=85.13 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=27.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++
T Consensus 19 ~l~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14270 19 ALNDINL-PIYENKITALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred eeeceeE-EEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3555544 68999999999999999999999765
No 357
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.63 E-value=1e-06 Score=76.54 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=90.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEee---cCC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYAR---AYN 199 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~---~~~ 199 (342)
...+.|+|+||+||||++.+++ ++.++++.+.... ++ .+.. ++.+.+ ...
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------------~~~~~~~~d~~~~--~l------~g~~------~~~v~~~d~~~~ 64 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------------GKTLVLSFDMSSK--VL------IGDE------NVDIADHDDMPP 64 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------------CCCEEEeccccch--hc------cCCC------CCceeecCCCCC
Confidence 4579999999999999998652 2477888876421 11 1111 122222 233
Q ss_pred HHHHHHHHHHHHHHhHhcCceEEEEeccccccccc-------cC----CCcchHHHHHHHHHHHHHHHHHHHHhCCEEEE
Q 019381 200 TDHQSRLLLEAASMMVETRFALMIVDSATALYRTD-------FS----GRGELSARQMHLAKFLRSLQKLADEFGVAVVI 268 (342)
Q Consensus 200 ~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~-------~~----~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~ 268 (342)
.....+.+..+... ..+++.||||+++.+...- .. ....+.. .-..+++.|+.+.. ++..||+
T Consensus 65 ~~~~~d~l~~~~~~--~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~---~~~~fl~~l~~L~~-~g~nII~ 138 (220)
T TIGR01618 65 IQAMVEFYVMQNIQ--AVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQK---LDLWFLDLLTVLKE-SNKNIYA 138 (220)
T ss_pred HHHHHHHHHHHHhc--cccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHH---HHHHHHHHHHHHHh-CCCcEEE
Confidence 44444544433221 3568999999999985410 00 0111222 22356666777654 8999999
Q ss_pred EeccccccCC---CcccCCCCccccCcc----ccccccceEEEEEeec-CCeEEEEEEeC
Q 019381 269 TNQVVAQVDG---SAIFAGPQIKPIGGN----IMAHASTTRLALRKGR-GEERICKVISS 320 (342)
Q Consensus 269 ~~h~~~~~~~---~~~~~~~~~~p~~g~----~~~~~~d~~l~l~~~~-~~~r~~~v~K~ 320 (342)
++|....... +..| ....|.... .+...+|.+..+.... ...|.+...-+
T Consensus 139 tAhe~~~~~~de~G~~~--~r~~P~i~~K~~n~l~G~~DvV~rl~i~~~~g~R~~~~~~~ 196 (220)
T TIGR01618 139 TAWELTNQSSGESGQIY--NRYQPDIREKVLNAFLGLTDVVGRIVLNGETGERGFILDPS 196 (220)
T ss_pred EEeeccccccCCCCCCc--ceechhhhhhHHHhhcccccEEEEEEEccCCCceEEEECCC
Confidence 9998542111 1111 123344443 4556778888877432 24466554433
No 358
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.63 E-value=2e-07 Score=91.59 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=43.5
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCcccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIM 295 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~ 295 (342)
..+|+++++|++++.++.. .+ ..+.+.|+.++++ +.|||+++|-... +
T Consensus 407 ~~~p~illLDEPt~gLD~~--------~~----~~~~~~l~~l~~~-~~tvi~vsHd~~~-------------------~ 454 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVG--------AK----FEIYQLIAELAKK-DKGIIIISSEMPE-------------------L 454 (491)
T ss_pred hcCCCEEEEcCCCcccChh--------HH----HHHHHHHHHHHHC-CCEEEEECCChHH-------------------H
Confidence 3689999999999987642 22 3667777777654 8999999998652 2
Q ss_pred ccccceEEEEEe
Q 019381 296 AHASTTRLALRK 307 (342)
Q Consensus 296 ~~~~d~~l~l~~ 307 (342)
...+|.++.+..
T Consensus 455 ~~~~d~v~~l~~ 466 (491)
T PRK10982 455 LGITDRILVMSN 466 (491)
T ss_pred HhhCCEEEEEEC
Confidence 346777777764
No 359
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=9.4e-08 Score=85.59 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=28.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
+.|+.+.. -+.+|+++.|.|++|+|||||+..++
T Consensus 18 ~~l~~is~-~i~~Ge~~~l~G~nGsGKSTLl~~l~ 51 (253)
T PRK14267 18 HVIKGVDL-KIPQNGVFALMGPSGCGKSTLLRTFN 51 (253)
T ss_pred eeeecceE-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34666655 79999999999999999999999655
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.63 E-value=2.9e-07 Score=90.05 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=41.8
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC----CCCceEEEecCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG----GEGKAMYIDAEGTFR 170 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~----~~~~vl~i~~e~~~~ 170 (342)
.-|+.+.. .+.+|+-+.|+|++|+|||||+..++ ....+..|. .+..+-|+.-+..+.
T Consensus 17 ~l~~~~~l-~~~~G~riGLvG~NGaGKSTLLkila--G~~~~~~G~i~~~~~~~v~~l~Q~~~~~ 78 (530)
T COG0488 17 PLLENVSL-TLNPGERIGLVGRNGAGKSTLLKILA--GELEPDSGEVTRPKGLRVGYLSQEPPLD 78 (530)
T ss_pred eeecCCcc-eeCCCCEEEEECCCCCCHHHHHHHHc--CCCcCCCCeEeecCCceEEEeCCCCCcC
Confidence 34566666 79999999999999999999999654 555555552 123677887665443
No 361
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.63 E-value=1.6e-07 Score=83.78 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=27.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++
T Consensus 16 ~l~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (248)
T PRK09580 16 ILRGLNL-EVRPGEVHAIMGPNGSGKSTLSATLA 48 (248)
T ss_pred eeeccee-EEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 4555544 78999999999999999999999665
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.63 E-value=4.6e-07 Score=88.66 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=84.5
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC----CCCCceEEEecCCC-C-C---------------
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG----GGEGKAMYIDAEGT-F-R--------------- 170 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g----~~~~~vl~i~~e~~-~-~--------------- 170 (342)
+..+-. .+.+|+-+.|.||+|+|||||+..++ ....+..| |.+-++-||+-+.. + .
T Consensus 338 ~~~~s~-~i~~g~riaiiG~NG~GKSTLlk~l~--g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~ 414 (530)
T COG0488 338 LKDLSF-RIDRGDRIAIVGPNGAGKSTLLKLLA--GELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDG 414 (530)
T ss_pred ecCceE-EecCCCEEEEECCCCCCHHHHHHHHh--hhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccc
Confidence 445555 89999999999999999999999764 33333344 34567888875531 0 0
Q ss_pred -HHHHHHHHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHH
Q 019381 171 -PQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLA 249 (342)
Q Consensus 171 -~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~ 249 (342)
...++.++.++++..+.+...+. ..+.-+... -+.+.+.-.++.++|+|+|+..++.
T Consensus 415 ~e~~~r~~L~~f~F~~~~~~~~v~---~LSGGEk~R---l~La~ll~~~pNvLiLDEPTNhLDi---------------- 472 (530)
T COG0488 415 DEQEVRAYLGRFGFTGEDQEKPVG---VLSGGEKAR---LLLAKLLLQPPNLLLLDEPTNHLDI---------------- 472 (530)
T ss_pred cHHHHHHHHHHcCCChHHHhCchh---hcCHhHHHH---HHHHHHhccCCCEEEEcCCCccCCH----------------
Confidence 23333444444544443322211 111111111 1123333468999999999998763
Q ss_pred HHHHHHHHHHHHhCCEEEEEecccc
Q 019381 250 KFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 250 ~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+-...|......|.-|||+++|-..
T Consensus 473 ~s~~aLe~aL~~f~Gtvl~VSHDr~ 497 (530)
T COG0488 473 ESLEALEEALLDFEGTVLLVSHDRY 497 (530)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3334566666678899999999876
No 363
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.63 E-value=8.5e-08 Score=86.26 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=29.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
+.|+.+.. -|++|+++.|.|++|+|||||+..++.
T Consensus 27 ~il~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 27 HALKNINL-DIAKNQVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred EEeeceeE-EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34666665 799999999999999999999997653
No 364
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.4e-07 Score=84.81 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=28.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++.
T Consensus 27 ~l~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 27 ALKNINL-SIPENEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred eEEeeEE-EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4444444 689999999999999999999997763
No 365
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.62 E-value=5e-07 Score=83.35 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=39.8
Q ss_pred HhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Q 019381 213 MMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272 (342)
Q Consensus 213 ~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~ 272 (342)
+.....|+++|-|+++..++... ..++++.|+.+.+++|.++++++|-
T Consensus 170 MALan~P~lLIADEPTTALDVtv------------QaQIL~Ll~~Lq~~~gMa~lfITHD 217 (534)
T COG4172 170 MALANEPDLLIADEPTTALDVTV------------QAQILDLLKELQAELGMAILFITHD 217 (534)
T ss_pred HHHcCCCCeEeecCCcchhhhhh------------HHHHHHHHHHHHHHhCcEEEEEecc
Confidence 33447899999999999876432 3589999999999999999999994
No 366
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.62 E-value=1.3e-07 Score=85.93 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=32.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 51 ~vL~~vs~-~i~~Ge~~~liG~NGsGKSTLl~~I~--Gl~~p~~G 92 (282)
T cd03291 51 PVLKNINL-KIEKGEMLAITGSTGSGKTSLLMLIL--GELEPSEG 92 (282)
T ss_pred cceeeeeE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 34555544 68999999999999999999999654 55555544
No 367
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=9.8e-08 Score=85.33 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=27.5
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
|+.+-. -+.+|+++.|.|++|+|||||+..++.
T Consensus 19 l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 19 LKGISM-EIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EeeeeE-EEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 444444 689999999999999999999998763
No 368
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.62 E-value=9.8e-07 Score=73.89 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=78.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC------------CCCceEEEecCCCCCHHHHH-H
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG------------GEGKAMYIDAEGTFRPQRLL-Q 176 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~------------~~~~vl~i~~e~~~~~~rl~-~ 176 (342)
+.|.++.- ++.+|+++++.|||||||||++.-+| ....|..|. ....|+| ..+.-++...+. .
T Consensus 19 ~~le~vsL-~ia~ge~vv~lGpSGcGKTTLLnl~A--Gf~~P~~G~i~l~~r~i~gPgaergvVF-Q~~~LlPWl~~~dN 94 (259)
T COG4525 19 SALEDVSL-TIASGELVVVLGPSGCGKTTLLNLIA--GFVTPSRGSIQLNGRRIEGPGAERGVVF-QNEALLPWLNVIDN 94 (259)
T ss_pred hhhhccce-eecCCCEEEEEcCCCccHHHHHHHHh--cCcCcccceEEECCEeccCCCccceeEe-ccCccchhhHHHHH
Confidence 35555555 89999999999999999999998544 444444431 1223433 333222221111 0
Q ss_pred H---HHHcCCChh-------hhh--------cceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCC
Q 019381 177 I---ADRYGLNGA-------DVL--------ENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGR 238 (342)
Q Consensus 177 ~---~~~~~~~~~-------~~~--------~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~ 238 (342)
+ ++..|+.+. .++ +.-++........+. ...+++ ....|+++++|++...++.
T Consensus 95 vafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQR--vGiARA--La~eP~~LlLDEPfgAlDa----- 165 (259)
T COG4525 95 VAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR--VGIARA--LAVEPQLLLLDEPFGALDA----- 165 (259)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHH--HHHHHH--hhcCcceEeecCchhhHHH-----
Confidence 1 111222211 000 111122222222222 222122 2378999999999876653
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 239 GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 239 ~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..|. .+-..|-.+.++.|..+++++|-..
T Consensus 166 ---~tRe----~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 166 ---LTRE----QMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred ---HHHH----HHHHHHHHHHHHhCCeEEEEeccHH
Confidence 2221 3444567788889999999999765
No 369
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1.1e-07 Score=86.21 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=28.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++
T Consensus 35 ~l~~vs~-~i~~Ge~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 35 ALVDVHL-KIPAKKIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred EEeeeee-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555 68999999999999999999999765
No 370
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.62 E-value=7.7e-07 Score=79.60 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=28.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++.
T Consensus 22 ~l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 22 ILKGLNL-SINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred eeeccee-EEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4555555 789999999999999999999997653
No 371
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=1.4e-07 Score=84.81 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=35.7
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++..++.. . ...+.+.|+.++++.+.+||+++|-..
T Consensus 167 ~~p~vllLDEP~~~LD~~--------~----~~~l~~~l~~l~~~~~~tiiivsH~~~ 212 (261)
T PRK14258 167 VKPKVLLMDEPCFGLDPI--------A----SMKVESLIQSLRLRSELTMVIVSHNLH 212 (261)
T ss_pred cCCCEEEEeCCCccCCHH--------H----HHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 679999999999877532 2 236777788877666899999998866
No 372
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.61 E-value=1.2e-07 Score=103.45 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=30.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+.|+.+-. -+++|+.++|+|++||||||++..++..
T Consensus 1182 ~vL~~lsl-~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1182 PIYKDLTF-SCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred ccccCeeE-EEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45777666 8999999999999999999999977543
No 373
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.60 E-value=1.5e-07 Score=85.19 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=28.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -|.+|+++.|.|++|||||||+..++.
T Consensus 39 il~~vsl-~i~~Ge~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 39 ALKNINL-DIHENEVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555554 689999999999999999999997764
No 374
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=1.6e-07 Score=84.15 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=28.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++
T Consensus 21 ~l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14261 21 ALYDITI-SIPKNRVTALIGPSGCGKSTLLRCFN 53 (253)
T ss_pred eeeeeEE-EECCCcEEEEECCCCCCHHHHHHHHh
Confidence 4555555 78999999999999999999999775
No 375
>PTZ00243 ABC transporter; Provisional
Probab=98.60 E-value=1.2e-07 Score=104.14 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=80.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA---- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~---- 186 (342)
.|+.+.- -+++|+.+.|+|++|||||||+..+. ....+.. +.++||+.+ .....++.+.+.+++-|+
T Consensus 1325 vL~~vsf-~I~~GekVaIVGrTGSGKSTLl~lLl--rl~~p~~-----G~I~IDG~d-i~~i~l~~LR~~I~iVpQdp~L 1395 (1560)
T PTZ00243 1325 VLRGVSF-RIAPREKVGIVGRTGSGKSTLLLTFM--RMVEVCG-----GEIRVNGRE-IGAYGLRELRRQFSMIPQDPVL 1395 (1560)
T ss_pred eeecceE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCC-----cEEEECCEE-cccCCHHHHHhcceEECCCCcc
Confidence 5666666 78999999999999999999999654 3444333 367777653 111112223333333221
Q ss_pred ---hhhcceeEeecCCHHHHHHHH-----------------------------------HHHHHHhHhcCceEEEEeccc
Q 019381 187 ---DVLENVAYARAYNTDHQSRLL-----------------------------------LEAASMMVETRFALMIVDSAT 228 (342)
Q Consensus 187 ---~~~~~i~~~~~~~~~~~~~~l-----------------------------------~~l~~~~~~~~~~lvviD~l~ 228 (342)
++.+|+......+.+++.+.+ ..+++++. .+++++|+|+.+
T Consensus 1396 F~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~-~~~~ILlLDEAT 1474 (1560)
T PTZ00243 1396 FDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK-KGSGFILMDEAT 1474 (1560)
T ss_pred ccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc-CCCCEEEEeCCC
Confidence 344454333223333333322 22233331 248999999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.++.+ .++ .+.+.|++.. .++|||+++|--.
T Consensus 1475 SaLD~~-------te~-----~Iq~~L~~~~--~~~TvI~IAHRl~ 1506 (1560)
T PTZ00243 1475 ANIDPA-------LDR-----QIQATVMSAF--SAYTVITIAHRLH 1506 (1560)
T ss_pred ccCCHH-------HHH-----HHHHHHHHHC--CCCEEEEEeccHH
Confidence 977642 221 3444454432 3799999998654
No 376
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=9.1e-08 Score=85.59 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=28.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++.
T Consensus 20 ~l~~is~-~i~~Ge~~~I~G~nGsGKSTLl~~i~G 53 (251)
T PRK14244 20 ILFDINL-DIYKREVTAFIGPSGCGKSTFLRCFNR 53 (251)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555555 689999999999999999999997664
No 377
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=2e-07 Score=84.31 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=28.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++.
T Consensus 36 il~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 36 AVNDISM-DIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred eeeceEE-EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555555 789999999999999999999997754
No 378
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.59 E-value=3.9e-07 Score=90.90 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=35.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+-. -+++|+.+.|+|++|||||||+..++ ...++..| .+++++.
T Consensus 357 ~l~~vs~-~i~~G~~~aivG~sGsGKSTl~~ll~--g~~~p~~G-----~i~~~g~ 404 (555)
T TIGR01194 357 ALGPIDL-RIAQGDIVFIVGENGCGKSTLAKLFC--GLYIPQEG-----EILLDGA 404 (555)
T ss_pred eeccceE-EEcCCcEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----EEEECCE
Confidence 4555555 78999999999999999999999765 44444433 5666654
No 379
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=1.4e-07 Score=86.06 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=29.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
+.|+.+-. -|.+|+++.|.|++|||||||+..++.
T Consensus 53 ~il~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 53 EAVKKVNA-DILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred EEEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34565555 799999999999999999999997653
No 380
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=1.7e-07 Score=93.95 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=36.3
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|.++++|++++-++.. . -..+++.|+++|++ |.+||++-|-.+
T Consensus 187 ~~P~iLflDEPTSGLDS~-------s-----A~~vv~~Lk~lA~~-grtVi~tIHQPs 231 (613)
T KOG0061|consen 187 TDPSILFLDEPTSGLDSF-------S-----ALQVVQLLKRLARS-GRTVICTIHQPS 231 (613)
T ss_pred cCCCEEEecCCCCCcchh-------h-----HHHHHHHHHHHHhC-CCEEEEEEeCCc
Confidence 689999999999976642 1 23789999999999 999998777543
No 381
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=1.2e-06 Score=86.91 Aligned_cols=41 Identities=34% Similarity=0.366 Sum_probs=31.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+.. -+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 334 ~l~~is~-~i~~Ge~~~l~G~NGsGKSTLl~~i~--G~~~p~~G 374 (530)
T PRK15064 334 LFKNLNL-LLEAGERLAIIGENGVGKTTLLRTLV--GELEPDSG 374 (530)
T ss_pred eecCcEE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCe
Confidence 3555544 68999999999999999999999765 55555544
No 382
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.58 E-value=1.5e-07 Score=103.43 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=80.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCCh-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNG----- 185 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~----- 185 (342)
.|+.+.- -+++|+.++|+|++|||||||+..+. ....+.. +.++||+.+ .....+..+.+++++-+
T Consensus 1301 vL~~is~-~I~~GekiaIVGrTGsGKSTL~~lL~--rl~~~~~-----G~I~IdG~d-I~~i~~~~LR~~i~iVpQdp~L 1371 (1522)
T TIGR00957 1301 VLRHINV-TIHGGEKVGIVGRTGAGKSSLTLGLF--RINESAE-----GEIIIDGLN-IAKIGLHDLRFKITIIPQDPVL 1371 (1522)
T ss_pred cccceeE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCccCCC-----CeEEECCEE-ccccCHHHHHhcCeEECCCCcc
Confidence 5666655 79999999999999999999999664 3344333 367777653 12111222223333211
Q ss_pred --hhhhcceeEeecCCHHHHHHH-----------------------------------HHHHHHHhHhcCceEEEEeccc
Q 019381 186 --ADVLENVAYARAYNTDHQSRL-----------------------------------LLEAASMMVETRFALMIVDSAT 228 (342)
Q Consensus 186 --~~~~~~i~~~~~~~~~~~~~~-----------------------------------l~~l~~~~~~~~~~lvviD~l~ 228 (342)
.++.+|+......+.+++.+. +..+++++ .+++++|+|+.+
T Consensus 1372 F~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALL--r~~~ILiLDEaT 1449 (1522)
T TIGR00957 1372 FSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALL--RKTKILVLDEAT 1449 (1522)
T ss_pred cCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHH--cCCCEEEEECCc
Confidence 133344432222333333322 22223333 578999999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.++.+ .+ ..+.+.|++.. .++|||+++|--.
T Consensus 1450 SalD~~-------Te-----~~Iq~~l~~~~--~~~TvI~IAHRl~ 1481 (1522)
T TIGR00957 1450 AAVDLE-------TD-----NLIQSTIRTQF--EDCTVLTIAHRLN 1481 (1522)
T ss_pred ccCCHH-------HH-----HHHHHHHHHHc--CCCEEEEEecCHH
Confidence 987642 22 14445555443 3799999999654
No 383
>PLN03073 ABC transporter F family; Provisional
Probab=98.58 E-value=1.1e-06 Score=89.74 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=32.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. .+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 524 il~~vsl-~i~~Ge~i~LvG~NGsGKSTLLk~L~--Gll~p~~G 564 (718)
T PLN03073 524 LFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIS--GELQPSSG 564 (718)
T ss_pred eEeccEE-EEcCCCEEEEECCCCCcHHHHHHHHh--CCCCCCCc
Confidence 3555555 78999999999999999999999665 55555554
No 384
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=4.8e-07 Score=81.64 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=27.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++
T Consensus 31 vl~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~l~ 63 (265)
T PRK14252 31 ALKNINM-MVHEKQVTALIGPSGCGKSTFLRCFN 63 (265)
T ss_pred eeeeeEE-EEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4555544 68999999999999999999999765
No 385
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5e-07 Score=75.11 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=77.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCC-HHHHHHHHH----HcCCChh-hhhcce
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFR-PQRLLQIAD----RYGLNGA-DVLENV 192 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~-~~rl~~~~~----~~~~~~~-~~~~~i 192 (342)
-|.+|+++.|.|++|+|||||+..+| .+..+..| -+|+.++..-. ..+..+.+- ..++.++ ++++|+
T Consensus 24 ~l~~Ge~~~i~G~NG~GKTtLLRila--GLl~p~~G-----~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL 96 (209)
T COG4133 24 TLNAGEALQITGPNGAGKTTLLRILA--GLLRPDAG-----EVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENL 96 (209)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHH--cccCCCCC-----eEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHH
Confidence 57899999999999999999999655 66655544 67777654211 111212221 1233333 456666
Q ss_pred eEeecC----CHHHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCCCcchHHHHH
Q 019381 193 AYARAY----NTDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSGRGELSARQM 246 (342)
Q Consensus 193 ~~~~~~----~~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~ 246 (342)
.|.... +...+.+.+..+ .+.+-.....+-|+|++.+.++.+ .
T Consensus 97 ~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~--------g--- 165 (209)
T COG4133 97 HFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE--------G--- 165 (209)
T ss_pred HHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHH--------H---
Confidence 654432 123333333222 122223667899999998876531 1
Q ss_pred HHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 247 HLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 247 ~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
...+...+..-+.. |-.||+++|-.-..
T Consensus 166 -~a~l~~l~~~H~~~-GGiVllttHq~l~~ 193 (209)
T COG4133 166 -VALLTALMAAHAAQ-GGIVLLTTHQPLPI 193 (209)
T ss_pred -HHHHHHHHHHHhcC-CCEEEEecCCccCC
Confidence 12344444444555 55567777765433
No 386
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=1.2e-07 Score=87.38 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
..|+.+-. -|.+|+++.|.|++|||||||+..++
T Consensus 59 ~iL~~is~-~i~~Ge~~~IvG~nGsGKSTLl~~L~ 92 (305)
T PRK14264 59 HALKGVSM-DIPEKSVTALIGPSGCGKSTFLRCLN 92 (305)
T ss_pred eeeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35666655 78999999999999999999999775
No 387
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.57 E-value=1.6e-06 Score=76.38 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=26.0
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHH
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLC 140 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~ 140 (342)
...|+.+-. -+++|+++.|+|++|||||||+
T Consensus 8 ~~~l~~vsl-~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 8 EHNLKNVDV-DIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhcccccee-ecCCCcEEEEEcCCCCCHHHHH
Confidence 344555555 7999999999999999999997
No 388
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=6.8e-08 Score=88.03 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=28.3
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -|.+|+++.|.|++|+|||||+..++
T Consensus 54 il~~is~-~i~~Ge~~~I~G~nGsGKSTLl~~l~ 86 (285)
T PRK14254 54 ALDDVSM-DIPENQVTAMIGPSGCGKSTFLRCIN 86 (285)
T ss_pred eEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555 78999999999999999999999765
No 389
>PRK13409 putative ATPase RIL; Provisional
Probab=98.56 E-value=1.1e-06 Score=87.93 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=35.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
.+++++++|++++.++. ..+ ..+.+.|+++++ +.+||+++|-....
T Consensus 229 ~~p~lllLDEPts~LD~--------~~~----~~l~~~i~~l~~--g~tvIivsHd~~~l 274 (590)
T PRK13409 229 RDADFYFFDEPTSYLDI--------RQR----LNVARLIRELAE--GKYVLVVEHDLAVL 274 (590)
T ss_pred cCCCEEEEECCCCCCCH--------HHH----HHHHHHHHHHHC--CCEEEEEeCCHHHH
Confidence 68999999999998763 332 367777777765 89999999976643
No 390
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.2e-07 Score=84.90 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=28.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++.
T Consensus 19 ~l~~~sl-~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14251 19 ALHGISL-DFEEKELTALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eeeeeeE-EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4455444 689999999999999999999997653
No 391
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.9e-07 Score=83.60 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=27.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++
T Consensus 20 ~l~~~s~-~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 20 ALNSVSL-DFYPNEITALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred eeeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4555555 68999999999999999999999765
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.55 E-value=1.4e-06 Score=81.60 Aligned_cols=138 Identities=16% Similarity=0.250 Sum_probs=80.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC-C----CceEEEecCCCCCHHHH-HHHHHH-cCCChhhhhc
Q 019381 118 GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG-E----GKAMYIDAEGTFRPQRL-LQIADR-YGLNGADVLE 190 (342)
Q Consensus 118 GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~-~----~~vl~i~~e~~~~~~rl-~~~~~~-~~~~~~~~~~ 190 (342)
|.|..|+++.+.||+|.|||||+..+| +.+.|+.|+. + .+--||+.+..-+...+ +..... ++.. .+.
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LA--G~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s---~~~ 436 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLA--GVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS---YFK 436 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHh--ccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccc---hhH
Confidence 689999999999999999999999765 5666665531 1 12234555433222221 111111 1111 000
Q ss_pred ceeEeecCCHHHHHHH---------HH-HHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 019381 191 NVAYARAYNTDHQSRL---------LL-EAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLAD 260 (342)
Q Consensus 191 ~i~~~~~~~~~~~~~~---------l~-~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~ 260 (342)
..+..+.+.+.+.+. |. -+.+.......++.++|++++.++. .+|. .+.+.+++++.
T Consensus 437 -~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv--------EqR~----~vakvIRR~~e 503 (591)
T COG1245 437 -TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV--------EQRI----IVAKVIRRFIE 503 (591)
T ss_pred -HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH--------HHHH----HHHHHHHHHHh
Confidence 001122222211110 11 1122333467899999999998764 5554 67788999999
Q ss_pred HhCCEEEEEeccc
Q 019381 261 EFGVAVVITNQVV 273 (342)
Q Consensus 261 ~~~~~vi~~~h~~ 273 (342)
+.+.+.+++.|--
T Consensus 504 ~~~kta~vVdHDi 516 (591)
T COG1245 504 NNEKTALVVDHDI 516 (591)
T ss_pred hcCceEEEEecce
Confidence 9999999998853
No 393
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.55 E-value=6.7e-07 Score=90.52 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=33.1
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+.. -+++|+++.|.|++|||||||+..++ ...+++.|
T Consensus 17 ~il~~is~-~i~~Ge~v~LvG~NGsGKSTLLriia--G~~~p~~G 58 (635)
T PRK11147 17 PLLDNAEL-HIEDNERVCLVGRNGAGKSTLMKILN--GEVLLDDG 58 (635)
T ss_pred eeEeCcEE-EECCCCEEEEECCCCCCHHHHHHHHc--CCCCCCCe
Confidence 34666665 79999999999999999999999654 55555544
No 394
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=2.1e-07 Score=83.12 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=28.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++
T Consensus 18 ~l~~i~~-~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 18 AVKNVTM-KIFKNQITAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred eEeeeeE-eecCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555 78999999999999999999999765
No 395
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.55 E-value=2.5e-07 Score=83.42 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=28.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++.
T Consensus 25 il~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 25 AVKNVWL-DIPKNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred EeecceE-EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555555 789999999999999999999997763
No 396
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.55 E-value=4.7e-07 Score=100.34 Aligned_cols=145 Identities=17% Similarity=0.242 Sum_probs=82.7
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh--
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA-- 186 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-- 186 (342)
...|+.+.- ++++|+++.|.|++|+||||++..++ +..++..| .+++++..- ... .....+..++-++
T Consensus 1952 ~~aL~~ISf-~I~~GEi~gLLG~NGAGKTTLlkmL~--Gll~ptsG-----~I~i~G~~i-~~~-~~~~r~~IGy~pQ~~ 2021 (2272)
T TIGR01257 1952 SPAVDRLCV-GVRPGECFGLLGVNGAGKTTTFKMLT--GDTTVTSG-----DATVAGKSI-LTN-ISDVHQNMGYCPQFD 2021 (2272)
T ss_pred ceEEEeeEE-EEcCCcEEEEECCCCCcHHHHHHHHh--CCCCCCcc-----EEEECCEEC-cch-HHHHhhhEEEEeccc
Confidence 346777777 89999999999999999999999654 55555444 556655431 111 1112222322111
Q ss_pred ------hhhcceeEe---ecCCHHH----HHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 187 ------DVLENVAYA---RAYNTDH----QSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 187 ------~~~~~i~~~---~~~~~~~----~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
.+.+++.+. +...... ..+.++.+ .+.....+|+++++|++++-+
T Consensus 2022 ~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL 2101 (2272)
T TIGR01257 2022 AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101 (2272)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 111111110 0001111 01111110 111223689999999999977
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
++ ..| ..+.+.|++++++ |.+||+++|.....
T Consensus 2102 Dp--------~sr----~~l~~lL~~l~~~-g~TIILtTH~mee~ 2133 (2272)
T TIGR01257 2102 DP--------QAR----RMLWNTIVSIIRE-GRAVVLTSHSMEEC 2133 (2272)
T ss_pred CH--------HHH----HHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence 64 222 2677777777766 89999999987643
No 397
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=2.1e-07 Score=83.32 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=28.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++
T Consensus 19 ~l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~i~ 51 (252)
T PRK14272 19 AVKNVNL-DVQRGTVNALIGPSGCGKTTFLRAIN 51 (252)
T ss_pred eeccceE-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555 78999999999999999999999765
No 398
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.55 E-value=1.2e-07 Score=88.09 Aligned_cols=46 Identities=11% Similarity=0.289 Sum_probs=36.6
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++++-++. ..+ ..+.+.|++++++.+.|+|+++|-..
T Consensus 117 ~~p~lllLDEP~s~LD~--------~~~----~~l~~~l~~l~~~~g~tiiivTHd~~ 162 (325)
T TIGR01187 117 FKPKILLLDEPLSALDK--------KLR----DQMQLELKTIQEQLGITFVFVTHDQE 162 (325)
T ss_pred hCCCEEEEeCCCccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 67999999999997763 222 36777888888888999999999754
No 399
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=3.4e-07 Score=81.84 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=28.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+++|+++.|.|++|+|||||+..++.
T Consensus 18 ~l~~~s~-~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 18 ILKNVNL-DIPKNSVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred EEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455544 789999999999999999999997764
No 400
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=4.5e-07 Score=86.59 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=86.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCCh-----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNG----- 185 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~----- 185 (342)
-|+.+.. -+|+|+-++|.|+|||||||++..+..-.- ..+-++||+.+ +...+...+.+..++-|
T Consensus 367 iL~gvsf-~I~kGekVaIvG~nGsGKSTilr~LlrF~d--------~sG~I~IdG~d-ik~~~~~SlR~~Ig~VPQd~~L 436 (591)
T KOG0057|consen 367 VLKGVSF-TIPKGEKVAIVGSNGSGKSTILRLLLRFFD--------YSGSILIDGQD-IKEVSLESLRQSIGVVPQDSVL 436 (591)
T ss_pred eecceeE-EecCCCEEEEECCCCCCHHHHHHHHHHHhc--------cCCcEEECCee-HhhhChHHhhhheeEeCCcccc
Confidence 4555554 799999999999999999999997654322 23478888764 23333333334444433
Q ss_pred --hhhhcceeEeecCCH-HHHHHHHHHH---------------------------------HHHhHhcCceEEEEecccc
Q 019381 186 --ADVLENVAYARAYNT-DHQSRLLLEA---------------------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 186 --~~~~~~i~~~~~~~~-~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l~~ 229 (342)
++++.|+.+-.+.-. ++..+..++. .....-.++.++++|+.++
T Consensus 437 FndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS 516 (591)
T KOG0057|consen 437 FNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATS 516 (591)
T ss_pred cchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCccc
Confidence 356677776554322 2222222111 0111125789999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
-++.+ .++ ++++.++. ..-+.|+|++.|--+
T Consensus 517 ~LD~~-------TE~-----~i~~~i~~--~~~~rTvI~IvH~l~ 547 (591)
T KOG0057|consen 517 ALDSE-------TER-----EILDMIMD--VMSGRTVIMIVHRLD 547 (591)
T ss_pred ccchh-------hHH-----HHHHHHHH--hcCCCeEEEEEecch
Confidence 87653 333 67777766 345889999988655
No 401
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.53 E-value=5.7e-07 Score=88.38 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=36.0
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++. .. ...+...|+.++++.+++||+++|-..
T Consensus 418 ~~p~lllLDEPt~gLD~--------~~----~~~l~~~L~~l~~~~~~tviivsHd~~ 463 (490)
T PRK10938 418 KHPTLLILDEPLQGLDP--------LN----RQLVRRFVDVLISEGETQLLFVSHHAE 463 (490)
T ss_pred cCCCEEEEcCccccCCH--------HH----HHHHHHHHHHHHhcCCcEEEEEecchh
Confidence 68999999999997764 22 237778888888775677999998865
No 402
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.53 E-value=2.4e-07 Score=83.94 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=27.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++
T Consensus 40 il~~vs~-~i~~Ge~~~I~G~nGsGKSTLl~~la 72 (272)
T PRK14236 40 ALFDISM-RIPKNRVTAFIGPSGCGKSTLLRCFN 72 (272)
T ss_pred EeeeEEE-EEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4555545 78999999999999999999999765
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.53 E-value=1.3e-06 Score=75.37 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+..|+++.|+||+|+|||||+..++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4457999999999999999999987654
No 404
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.53 E-value=2e-07 Score=84.14 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=29.3
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
+.|+.+.. -+.+|+++.|.|++|||||||+..++.
T Consensus 34 ~il~~vsl-~i~~Ge~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 34 EAIKGIDM-QFEKNKITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred eeEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35666655 789999999999999999999997653
No 405
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=1.1e-06 Score=74.44 Aligned_cols=39 Identities=28% Similarity=0.420 Sum_probs=32.5
Q ss_pred cCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 107 SGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 107 tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.|-.-||.+-- -+++|++..|.||+|+|||||+..++-.
T Consensus 12 ~Gr~ll~~vsl-~~~pGev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 12 AGRRLLDGVSL-DLRPGEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred ecceeccCcce-eccCCcEEEEECCCCccHHHHHHHhhCc
Confidence 55566777766 7999999999999999999999976543
No 406
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.52 E-value=2e-06 Score=85.84 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=39.1
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC----CCCceEEEecC
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG----GEGKAMYIDAE 166 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~----~~~~vl~i~~e 166 (342)
...|+.+.. -+++|+++.|.|++|||||||+..++ ...++..|. .+..+.|+.-+
T Consensus 20 ~~il~~vs~-~i~~Ge~~~iiG~NGsGKSTLlk~i~--G~~~p~~G~i~~~~~~~i~~v~Q~ 78 (556)
T PRK11819 20 KQILKDISL-SFFPGAKIGVLGLNGAGKSTLLRIMA--GVDKEFEGEARPAPGIKVGYLPQE 78 (556)
T ss_pred CeeeeCceE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCceEEecCCCEEEEEecC
Confidence 345666666 79999999999999999999999654 555555442 12345566544
No 407
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=6.2e-07 Score=93.37 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=69.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCCh----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNG---- 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~---- 185 (342)
+.|+.+.- -+|+|+.+.|.|++||||||+...+.. ...|.. +.+++|+++- ....++.+....++-.
T Consensus 367 ~Il~g~sl-~i~~G~~valVG~SGsGKST~i~LL~R--fydP~~-----G~V~idG~di-~~~~~~~lr~~iglV~QePv 437 (1228)
T KOG0055|consen 367 KILKGVSL-KIPSGQTVALVGPSGSGKSTLIQLLAR--FYDPTS-----GEVLIDGEDI-RNLNLKWLRSQIGLVSQEPV 437 (1228)
T ss_pred hhhCCeEE-EeCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCC-----ceEEEcCccc-hhcchHHHHhhcCeeeechh
Confidence 34444444 689999999999999999999986543 334433 4889998752 3333333334444321
Q ss_pred ---hhhhcceeEeecC-CHHHHHHHHH---------HH------------------------HHHhHhcCceEEEEeccc
Q 019381 186 ---ADVLENVAYARAY-NTDHQSRLLL---------EA------------------------ASMMVETRFALMIVDSAT 228 (342)
Q Consensus 186 ---~~~~~~i~~~~~~-~~~~~~~~l~---------~l------------------------~~~~~~~~~~lvviD~l~ 228 (342)
..+.+|+.+-.+. +..+..+..+ .+ .+.....+|+++++|+.+
T Consensus 438 lF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaT 517 (1228)
T KOG0055|consen 438 LFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEAT 517 (1228)
T ss_pred hhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcc
Confidence 2455677666543 2222222221 11 111222679999999999
Q ss_pred ccccc
Q 019381 229 ALYRT 233 (342)
Q Consensus 229 ~l~~~ 233 (342)
+.++.
T Consensus 518 SaLD~ 522 (1228)
T KOG0055|consen 518 SALDA 522 (1228)
T ss_pred cccCH
Confidence 98875
No 408
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.50 E-value=1.8e-07 Score=94.98 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=32.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+-. -+++|+.+.|.|++|||||||+..++ ...++..|
T Consensus 466 ~il~~isl-~i~~Ge~~~IvG~nGsGKSTLl~lL~--Gl~~~~~G 507 (659)
T TIGR00954 466 VLIESLSF-EVPSGNHLLICGPNGCGKSSLFRILG--ELWPVYGG 507 (659)
T ss_pred eeeecceE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCC
Confidence 45666655 78999999999999999999999665 44554443
No 409
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.50 E-value=2.7e-07 Score=101.27 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=80.4
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCCh----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNG---- 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~---- 185 (342)
+.|+.+.. -|++|+.++|+|++|||||||+..++... + .. +.++||+.. ........+.+++++-|
T Consensus 1233 ~vL~~is~-~I~~GekvaIvGrSGsGKSTLl~lL~rl~--~-~~-----G~I~IdG~d-i~~i~~~~lR~~is~IpQdp~ 1302 (1490)
T TIGR01271 1233 AVLQDLSF-SVEGGQRVGLLGRTGSGKSTLLSALLRLL--S-TE-----GEIQIDGVS-WNSVTLQTWRKAFGVIPQKVF 1302 (1490)
T ss_pred ceeeccEE-EEcCCCEEEEECCCCCCHHHHHHHHhhhc--C-CC-----cEEEECCEE-cccCCHHHHHhceEEEeCCCc
Confidence 35555555 79999999999999999999999776543 2 22 367777653 11111122222332211
Q ss_pred ---hhhhcceeEeecCCHHHHHH-----------------------------------HHHHHHHHhHhcCceEEEEecc
Q 019381 186 ---ADVLENVAYARAYNTDHQSR-----------------------------------LLLEAASMMVETRFALMIVDSA 227 (342)
Q Consensus 186 ---~~~~~~i~~~~~~~~~~~~~-----------------------------------~l~~l~~~~~~~~~~lvviD~l 227 (342)
.++.+|+......+.+++.+ .+..+++++ .+++++|+|++
T Consensus 1303 LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALL--r~~~ILlLDEa 1380 (1490)
T TIGR01271 1303 IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL--SKAKILLLDEP 1380 (1490)
T ss_pred cCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence 12334443222222222222 223223333 57899999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++.++.+ .+ ..+.+.|+... .++|||+++|--.
T Consensus 1381 TS~lD~~-------Te-----~~I~~~L~~~~--~~~TvI~IaHRl~ 1413 (1490)
T TIGR01271 1381 SAHLDPV-------TL-----QIIRKTLKQSF--SNCTVILSEHRVE 1413 (1490)
T ss_pred cccCCHH-------HH-----HHHHHHHHHHc--CCCEEEEEecCHH
Confidence 9987642 21 24555666543 3799999999654
No 410
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=3.3e-07 Score=82.07 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=28.6
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -|++|+++.|.|++|||||||+..++.
T Consensus 19 ~l~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 19 AVKDVSM-DFPENSVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred EEecceE-EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555555 689999999999999999999997653
No 411
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.49 E-value=9e-07 Score=70.49 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=65.4
Q ss_pred EEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHHHHH
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSR 205 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 205 (342)
++|.||||+|||+++..+|... +.++++++...-... .......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---------~~~~~~i~~~~~~~~---------------------------~~~~~~~ 44 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---------GFPFIEIDGSELISS---------------------------YAGDSEQ 44 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---------TSEEEEEETTHHHTS---------------------------STTHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc---------ccccccccccccccc---------------------------ccccccc
Confidence 5799999999999999987654 235777776521000 0111112
Q ss_pred HHHHHHHHhHhcC-ceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH-hCCEEEEEecccccc
Q 019381 206 LLLEAASMMVETR-FALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE-FGVAVVITNQVVAQV 276 (342)
Q Consensus 206 ~l~~l~~~~~~~~-~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~-~~~~vi~~~h~~~~~ 276 (342)
.+..+...+.... +.+++||++..+.... ... ........+..++..+...... .++.||++++.....
T Consensus 45 ~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~-~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 45 KIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPS-SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp HHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STS-SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred ccccccccccccccceeeeeccchhccccc-ccc-cccccccccceeeecccccccccccceeEEeeCChhhC
Confidence 2222222233344 8999999999998765 111 1133333455555666555543 347788777664433
No 412
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=7.8e-07 Score=79.87 Aligned_cols=40 Identities=28% Similarity=0.270 Sum_probs=31.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~ 153 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++ ...++..
T Consensus 25 ~l~~vs~-~i~~Ge~~~i~G~nGsGKSTLl~~ia--G~~~~~~ 64 (257)
T PRK14246 25 ILKDITI-KIPNNSIFGIMGPSGSGKSTLLKVLN--RLIEIYD 64 (257)
T ss_pred eEeceEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCc
Confidence 4555555 68899999999999999999999765 4444443
No 413
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.48 E-value=1.8e-06 Score=75.32 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=28.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
-+++|+++.|.|++|||||||+..++ ...++..|
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~--Gl~~~~sG 42 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLC--GLDAPDEG 42 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHh--CCccCCCC
Confidence 68899999999999999999999755 44555544
No 414
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.48 E-value=1.3e-06 Score=73.24 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=52.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQ 203 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (342)
.++.|.|+||||||+||..++... +.+++|+++...++.+....+..+..--++ ....+.. ...+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---------~~~~~~iat~~~~~~e~~~ri~~h~~~R~~----~w~t~E~--~~~l 66 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---------GLQVLYIATAQPFDDEMAARIAHHRQRRPA----HWQTVEE--PLDL 66 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---------CCCcEeCcCCCCChHHHHHHHHHHHhcCCC----CCeEecc--cccH
Confidence 478999999999999999987542 235899999876555322222222111122 1112211 1112
Q ss_pred HHHHHHHHHHhHhcCceEEEEeccccccccc
Q 019381 204 SRLLLEAASMMVETRFALMIVDSATALYRTD 234 (342)
Q Consensus 204 ~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~ 234 (342)
...+. .. ..+.++|+||+++.+....
T Consensus 67 ~~~i~---~~--~~~~~~VlID~Lt~~~~n~ 92 (170)
T PRK05800 67 AELLR---AD--AAPGRCVLVDCLTTWVTNL 92 (170)
T ss_pred HHHHH---hh--cCCCCEEEehhHHHHHHHH
Confidence 22221 11 1346799999999987643
No 415
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.47 E-value=1.5e-06 Score=85.07 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=85.1
Q ss_pred ccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC----CCceEEEecCCCCCHHHHHHHH---
Q 019381 106 TSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG----EGKAMYIDAEGTFRPQRLLQIA--- 178 (342)
Q Consensus 106 ~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~----~~~vl~i~~e~~~~~~rl~~~~--- 178 (342)
+-|..-++++-- .+++|+-+.|.|+||||||+|...+ +.+.|...|.. +..++|+.-..-++...+++..
T Consensus 403 p~~~~ll~~l~~-~v~~G~~llI~G~SG~GKTsLlRai--aGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP 479 (604)
T COG4178 403 PDGQTLLSELNF-EVRPGERLLITGESGAGKTSLLRAL--AGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYP 479 (604)
T ss_pred CCCCeeecccee-eeCCCCEEEEECCCCCCHHHHHHHH--hccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCC
Confidence 344445555555 7999999999999999999999955 47777666532 3447888766444444444432
Q ss_pred ---------------HHcCCChhhhhccee----EeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCc
Q 019381 179 ---------------DRYGLNGADVLENVA----YARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRG 239 (342)
Q Consensus 179 ---------------~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~ 239 (342)
...++. ++.+++. ..+..+..+. +.+. .+.+.-++|+.+|+|+-++.++.+
T Consensus 480 ~~~~~~~d~~l~~vL~~vgL~--~L~~rl~~~~~W~~vLS~GEq-QRla--fARilL~kP~~v~LDEATsALDe~----- 549 (604)
T COG4178 480 NAAPDFSDAELVAVLHKVGLG--DLAERLDEEDRWDRVLSGGEQ-QRLA--FARLLLHKPKWVFLDEATSALDEE----- 549 (604)
T ss_pred CCCCCCChHHHHHHHHHcCcH--HHHHHHhccCcHhhhcChhHH-HHHH--HHHHHHcCCCEEEEecchhccChH-----
Confidence 222211 0111100 1111111111 1111 223334899999999999987642
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 240 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 240 ~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+ ..+.+.|++-+ .+++||-+.|-.+
T Consensus 550 --~e-----~~l~q~l~~~l--p~~tvISV~Hr~t 575 (604)
T COG4178 550 --TE-----DRLYQLLKEEL--PDATVISVGHRPT 575 (604)
T ss_pred --HH-----HHHHHHHHhhC--CCCEEEEeccchh
Confidence 11 13444444321 6899999998765
No 416
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.47 E-value=7.2e-07 Score=80.12 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=29.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
..|+.+.. -+++|+++.|.|++|||||||+..++.
T Consensus 18 ~~l~~isl-~i~~Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 18 HAVEDVNL-NIEPRSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred eeeeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34666555 789999999999999999999997653
No 417
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.47 E-value=3.4e-06 Score=75.53 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.||.|.++.|+|.||||||||+..+.
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHH
Confidence 69999999999999999999998774
No 418
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.47 E-value=2e-06 Score=81.14 Aligned_cols=151 Identities=17% Similarity=0.287 Sum_probs=97.9
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
...+.+|-+.|.++.. -+++|..+++.||+|+||||+..-+....-. +.+.+-||+.+ ........+.+..
T Consensus 544 tF~Y~p~k~vl~disF-~v~pGktvAlVG~SGaGKSTimRlLfRffdv-------~sGsI~iDgqd-Irnvt~~SLRs~I 614 (790)
T KOG0056|consen 544 TFAYDPGKPVLSDISF-TVQPGKTVALVGPSGAGKSTIMRLLFRFFDV-------NSGSITIDGQD-IRNVTQSSLRSSI 614 (790)
T ss_pred EEecCCCCceeecceE-EecCCcEEEEECCCCCchhHHHHHHHHHhhc-------cCceEEEcCch-HHHHHHHHHHHhc
Confidence 4467788888988888 8999999999999999999999876544332 34588898875 2333333445567
Q ss_pred CCChh-------hhhcceeEeecCCHHHHHHHHHHH----------------------------------HHHhHhcCce
Q 019381 182 GLNGA-------DVLENVAYARAYNTDHQSRLLLEA----------------------------------ASMMVETRFA 220 (342)
Q Consensus 182 ~~~~~-------~~~~~i~~~~~~~~~~~~~~l~~l----------------------------------~~~~~~~~~~ 220 (342)
|+-|+ .++-||.+.++...++....-.++ .+...-..|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 76553 455677777665443322111111 0001114689
Q ss_pred EEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 221 LMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 221 lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+|.+|+.++.++.. .+| .+-..|.++|.. ..+||+.+.++.
T Consensus 695 iIlLDEATSALDT~-------tER-----~IQaaL~rlca~-RTtIVvAHRLST 735 (790)
T KOG0056|consen 695 IILLDEATSALDTN-------TER-----AIQAALARLCAN-RTTIVVAHRLST 735 (790)
T ss_pred EEEEcchhhhcCCc-------cHH-----HHHHHHHHHhcC-CceEEEeeeehh
Confidence 99999999987643 444 566677888864 556665554544
No 419
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=3.2e-07 Score=82.51 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=28.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+.+|+++.|.|++|||||||+..++.
T Consensus 22 il~~isl-~i~~Ge~~~l~G~nGsGKSTLlk~l~G 55 (259)
T PRK14260 22 AIEGISM-DIYRNKVTAIIGPSGCGKSTFIKTLNR 55 (259)
T ss_pred eecceEE-EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555555 789999999999999999999997764
No 420
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=6.7e-07 Score=83.10 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -|++|+++.|+|++|||||||+..++.
T Consensus 97 ~L~~is~-~I~~Ge~v~IvG~~GsGKSTLl~~L~g 130 (329)
T PRK14257 97 VLHDLNL-DIKRNKVTAFIGPSGCGKSTFLRNLNQ 130 (329)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4555555 799999999999999999999997653
No 421
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2.5e-07 Score=82.81 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=28.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+-. -+.+|+++.|.|++|+|||||+..++.
T Consensus 20 ~l~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 20 ALKGIDL-DFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EEecceE-EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455444 689999999999999999999997653
No 422
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.46 E-value=3.3e-06 Score=84.16 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=33.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
..|+.+.. -|.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 19 ~il~~is~-~i~~Ge~~~liG~NGsGKSTLl~~i~--G~~~p~~G 60 (552)
T TIGR03719 19 EILKDISL-SFFPGAKIGVLGLNGAGKSTLLRIMA--GVDKEFNG 60 (552)
T ss_pred eeecCceE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc
Confidence 34666655 78999999999999999999999655 55555554
No 423
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.45 E-value=1.9e-06 Score=70.01 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEe-----cCCCCCHHHHHHHHHHcCCC-------hh
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID-----AEGTFRPQRLLQIADRYGLN-------GA 186 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~-----~e~~~~~~rl~~~~~~~~~~-------~~ 186 (342)
.-+.|+.+++.||+|+|||+|+.. ++.+.-+..| .+.|. .........++.+.+..|.- |.
T Consensus 24 ~~~~getlvllgpsgagkssllr~--lnlle~p~sg-----~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph 96 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSLLRV--LNLLEMPRSG-----TLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH 96 (242)
T ss_pred cCCCCCEEEEECCCCCchHHHHHH--HHHHhCCCCC-----eEEecccccccccCccHHHHHHHHHhhhhhhhhhccCch
Confidence 467899999999999999999985 4455444443 33332 22222234444444443321 11
Q ss_pred -hhhcceeE----eecCC----HHHHHHHHHHH----------------------HHHhHhcCceEEEEecccccccccc
Q 019381 187 -DVLENVAY----ARAYN----TDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDF 235 (342)
Q Consensus 187 -~~~~~i~~----~~~~~----~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~ 235 (342)
.+.+|+.- +...+ ..+..+++.++ .+...-..|.++.+|++++.++++.
T Consensus 97 ltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpei 176 (242)
T COG4161 97 LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred hHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence 22222110 00001 11222233322 1111126799999999999887643
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 236 SGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 236 ~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
...+...+|.++. .|+|-++++|-..
T Consensus 177 ------------taqvv~iikel~~-tgitqvivthev~ 202 (242)
T COG4161 177 ------------TAQIVSIIKELAE-TGITQVIVTHEVE 202 (242)
T ss_pred ------------HHHHHHHHHHHHh-cCceEEEEEeehh
Confidence 2367778888775 5999888888654
No 424
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.44 E-value=2.7e-06 Score=68.28 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.|.+|+++-|.||+|||||||...++-.
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~ 51 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGA 51 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhh
Confidence 6889999999999999999999876543
No 425
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.44 E-value=1.7e-06 Score=90.18 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=84.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC---Ch-
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL---NG- 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~---~~- 185 (342)
+.|+.+-. -+++|+.++|+|||||||||....+-. ...+. .+.++||..+ .....++-+.+++++ .|
T Consensus 1004 ~Il~~l~l-~i~~GqTvALVG~SGsGKSTvI~LLeR--fYdp~-----~G~V~IDg~d-ik~lnl~~LR~~i~lVsQEP~ 1074 (1228)
T KOG0055|consen 1004 PVLNNLSL-SIRAGQTVALVGPSGSGKSTVISLLER--FYDPD-----AGKVKIDGVD-IKDLNLKWLRKQIGLVSQEPV 1074 (1228)
T ss_pred hhhcCCcE-EecCCCEEEEECCCCCCHHHHHHHHHH--hcCCC-----CCeEEECCcc-cccCCHHHHHHhcceeccCch
Confidence 45566555 799999999999999999999885433 22333 3488898663 222333333344443 22
Q ss_pred ---hhhhcceeEee-cCCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEeccc
Q 019381 186 ---ADVLENVAYAR-AYNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDSAT 228 (342)
Q Consensus 186 ---~~~~~~i~~~~-~~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~l~ 228 (342)
.++.+|+.|-. ..+..++.+..+.+ .+...-.+|+++++|+-|
T Consensus 1075 LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEAT 1154 (1228)
T KOG0055|consen 1075 LFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEAT 1154 (1228)
T ss_pred hhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccc
Confidence 25667887762 23445555444322 112223789999999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.++.+ .+| .+.+ .|.+. .+ |.|.|++.|--+
T Consensus 1155 SALDse-------SEr--vVQe---ALd~a-~~-gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1155 SALDSE-------SER--VVQE---ALDRA-ME-GRTTIVIAHRLS 1186 (1228)
T ss_pred hhhhhh-------hHH--HHHH---HHHHh-hc-CCcEEEEecchh
Confidence 988753 332 2333 34433 33 566666666443
No 426
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.43 E-value=2.9e-06 Score=72.13 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=81.2
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCH-HHHHHHHHHcC-----C
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRP-QRLLQIADRYG-----L 183 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~-~rl~~~~~~~~-----~ 183 (342)
|+.+.. -|+.|+++.|.|.+|+|||||+..++ +.+.++.| -++|+...- ++. .|...+++-|. .
T Consensus 22 l~~~sL-~I~~g~FvtViGsNGAGKSTlln~ia--G~l~~t~G-----~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt 93 (263)
T COG1101 22 LNGLSL-EIAEGDFVTVIGSNGAGKSTLLNAIA--GDLKPTSG-----QILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93 (263)
T ss_pred HhcCce-eecCCceEEEEcCCCccHHHHHHHhh--CccccCCc-----eEEECceecccCCHHHHhhHHHHHhcchhhCC
Confidence 444444 79999999999999999999999665 44444433 677776531 122 22222222221 1
Q ss_pred Chh-hhhcceeEeecC----------CHHH---HHHHHH----------------------HHHHH--hHhcCceEEEEe
Q 019381 184 NGA-DVLENVAYARAY----------NTDH---QSRLLL----------------------EAASM--MVETRFALMIVD 225 (342)
Q Consensus 184 ~~~-~~~~~i~~~~~~----------~~~~---~~~~l~----------------------~l~~~--~~~~~~~lvviD 225 (342)
-++ .+.+|+.+.... +... ..+.+. ++..+ ...++|+++++|
T Consensus 94 ~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLD 173 (263)
T COG1101 94 APELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD 173 (263)
T ss_pred cccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEec
Confidence 111 222332221110 0000 001111 11111 122789999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 226 ~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+-++.+++.. + ..++..=.++.+++++|.++++|...
T Consensus 174 EHTAALDPkt------a------~~vm~lT~kiV~~~klTtlMVTHnm~ 210 (263)
T COG1101 174 EHTAALDPKT------A------EFVMELTAKIVEEHKLTTLMVTHNME 210 (263)
T ss_pred chhhcCCcch------H------HHHHHHHHHHHHhcCCceEEEeccHH
Confidence 9999887532 1 24566667888999999999999766
No 427
>PLN03073 ABC transporter F family; Provisional
Probab=98.43 E-value=2.4e-06 Score=87.12 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=36.9
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
+-|+.+-. -|.+|+.+.|+|++|||||||+..++.......+ .++.+.|+..+
T Consensus 191 ~ll~~isl-~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p---~~g~I~~~~Q~ 243 (718)
T PLN03073 191 DLIVDASV-TLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIP---KNCQILHVEQE 243 (718)
T ss_pred EEEECCEE-EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC---CCCEEEEEecc
Confidence 45666666 7999999999999999999999977632110001 24567777543
No 428
>PLN03211 ABC transporter G-25; Provisional
Probab=98.42 E-value=1.9e-06 Score=87.33 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=34.9
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++.. . ...+.+.|++++++ +.|||+++|-..
T Consensus 223 ~~P~iLlLDEPtsgLD~~--------~----~~~l~~~L~~l~~~-g~TvI~~sH~~~ 267 (659)
T PLN03211 223 INPSLLILDEPTSGLDAT--------A----AYRLVLTLGSLAQK-GKTIVTSMHQPS 267 (659)
T ss_pred hCCCEEEEeCCCCCcCHH--------H----HHHHHHHHHHHHhC-CCEEEEEecCCC
Confidence 579999999999977642 2 23778888888874 889999998654
No 429
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.40 E-value=3.8e-07 Score=78.73 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=23.2
Q ss_pred CCCC-cEEEEecCCCCChhHHHHHHHHHc
Q 019381 120 VETG-SITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 120 i~~G-~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+.+| .++.|+||+|+|||||+..++...
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~ 52 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLT 52 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 4556 589999999999999999987433
No 430
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.40 E-value=2.8e-06 Score=73.09 Aligned_cols=44 Identities=11% Similarity=0.260 Sum_probs=31.8
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++..++.. . ...+...|+++++ +.+||+++|...
T Consensus 134 ~~~~illlDEP~~~LD~~--------~----~~~l~~~l~~~~~--~~tiIiitH~~~ 177 (197)
T cd03278 134 RPSPFCVLDEVDAALDDA--------N----VERFARLLKEFSK--ETQFIVITHRKG 177 (197)
T ss_pred CCCCEEEEeCCcccCCHH--------H----HHHHHHHHHHhcc--CCEEEEEECCHH
Confidence 456999999999876532 1 2366667777654 688999998864
No 431
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.39 E-value=6.2e-06 Score=82.32 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=32.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+.. -+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 339 ~l~~isl-~i~~Ge~~~l~G~NGsGKSTLl~~i~--G~~~p~~G 379 (556)
T PRK11819 339 LIDDLSF-SLPPGGIVGIIGPNGAGKSTLFKMIT--GQEQPDSG 379 (556)
T ss_pred eecceeE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCe
Confidence 4555554 68999999999999999999999765 55555544
No 432
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.39 E-value=5.6e-06 Score=82.58 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=31.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+.. -+.+|+++.|.|++|||||||+..++ ...++..|
T Consensus 337 ~l~~isl-~i~~Ge~~~l~G~NGsGKSTLl~~l~--G~~~p~~G 377 (552)
T TIGR03719 337 LIDDLSF-KLPPGGIVGVIGPNGAGKSTLFRMIT--GQEQPDSG 377 (552)
T ss_pred eeccceE-EEcCCCEEEEECCCCCCHHHHHHHHc--CCCCCCCe
Confidence 4555555 68999999999999999999999664 55555544
No 433
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.39 E-value=6.6e-07 Score=74.86 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=38.9
Q ss_pred cCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 107 SGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 107 tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
-|+..|+.+.. -+.+|++-.|.||+|+|||||.-.|. .-.++.. +.+||+.
T Consensus 16 ~GF~Aln~ls~-~v~~Gelr~lIGpNGAGKTT~mD~It--GKtrp~~-----G~v~f~g 66 (249)
T COG4674 16 GGFKALNDLSF-SVDPGELRVLIGPNGAGKTTLMDVIT--GKTRPQE-----GEVLFDG 66 (249)
T ss_pred cceeeeeeeEE-EecCCeEEEEECCCCCCceeeeeeec--ccCCCCc-----ceEEEcC
Confidence 57788888887 89999999999999999999998544 3334332 3556655
No 434
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.36 E-value=7.5e-07 Score=76.99 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+|++++|+|++|+|||||+..++...
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHH
Confidence 46999999999999999999987543
No 435
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.36 E-value=6.4e-06 Score=71.53 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=32.4
Q ss_pred ccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 106 TSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 106 ~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
--|-+.|+.+.. -+.+|+=..|.|++|||||||+..++
T Consensus 41 r~gk~iL~~isW-~V~~ge~W~I~G~NGsGKTTLL~ll~ 78 (257)
T COG1119 41 RNGKKILGDLSW-QVNPGEHWAIVGPNGAGKTTLLSLLT 78 (257)
T ss_pred ECCEeeccccce-eecCCCcEEEECCCCCCHHHHHHHHh
Confidence 355666777777 89999999999999999999999654
No 436
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.36 E-value=1.4e-06 Score=96.67 Aligned_cols=143 Identities=15% Similarity=0.236 Sum_probs=80.8
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh--
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA-- 186 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-- 186 (342)
...|+.+.. .+++|+++.|.|++|+|||||+..++ +..++..| .+++++..- .. ....+.+.+++-++
T Consensus 943 k~aL~~lsl-~I~~Gei~aLLG~NGAGKSTLLkiLa--GLl~PtsG-----~I~i~G~dI-~~-~~~~~r~~IG~~pQ~~ 1012 (2272)
T TIGR01257 943 RPAVDRLNI-TFYENQITAFLGHNGAGKTTTLSILT--GLLPPTSG-----TVLVGGKDI-ET-NLDAVRQSLGMCPQHN 1012 (2272)
T ss_pred ceEEEeeEE-EEcCCcEEEEECCCCChHHHHHHHHh--cCCCCCce-----EEEECCEEC-cc-hHHHHhhcEEEEecCC
Confidence 345666666 79999999999999999999999654 56555544 556655431 11 11112222222111
Q ss_pred ------hhhcceeEe---ecCCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 187 ------DVLENVAYA---RAYNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 187 ------~~~~~i~~~---~~~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
.+.+++.+. ..... ....+.++.+ .+.....+++++++|++++-+
T Consensus 1013 ~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGL 1092 (2272)
T TIGR01257 1013 ILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGV 1092 (2272)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCC
Confidence 122222211 00010 1111122111 111223689999999999977
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
+. ..| ..+.+.|+++. + +.+||+++|-...
T Consensus 1093 Dp--------~sr----~~l~~lL~~l~-~-g~TIIltTHdmde 1122 (2272)
T TIGR01257 1093 DP--------YSR----RSIWDLLLKYR-S-GRTIIMSTHHMDE 1122 (2272)
T ss_pred CH--------HHH----HHHHHHHHHHh-C-CCEEEEEECCHHH
Confidence 64 222 26777777773 3 8999999998763
No 437
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.35 E-value=5.6e-06 Score=68.94 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=33.3
Q ss_pred CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 218 ~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++++++|++..-++. .++ ..+...+.++.++ ++++|+++|...
T Consensus 99 ~~~llllDEp~~gld~--------~~~----~~l~~~l~~~~~~-~~~vii~TH~~~ 142 (162)
T cd03227 99 PRPLYILDEIDRGLDP--------RDG----QALAEAILEHLVK-GAQVIVITHLPE 142 (162)
T ss_pred CCCEEEEeCCCCCCCH--------HHH----HHHHHHHHHHHhc-CCEEEEEcCCHH
Confidence 7899999999886653 232 2566677777666 899999999865
No 438
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.34 E-value=1.2e-06 Score=88.28 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=29.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
..|+.+-+ -+++|++++|.|++|+|||||+..++
T Consensus 39 ~iL~~vs~-~i~~Ge~~aI~G~sGsGKSTLL~~L~ 72 (617)
T TIGR00955 39 HLLKNVSG-VAKPGELLAVMGSSGAGKTTLMNALA 72 (617)
T ss_pred ccccCCEE-EEeCCeEEEEECCCCCCHHHHHHHHh
Confidence 35666665 89999999999999999999999765
No 439
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.33 E-value=6.5e-07 Score=75.18 Aligned_cols=135 Identities=20% Similarity=0.260 Sum_probs=76.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH-HcCCChh--hh------h
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD-RYGLNGA--DV------L 189 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~-~~~~~~~--~~------~ 189 (342)
.+.+|+++.+.||+|+||||.-+.++ .+.+++.| .++++..+ .+..-+...++ ..++-|+ ++ .
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~--Glv~~d~G-----~i~ld~~d-iT~lPm~~RArlGigYLpQE~SIFr~LtV~ 97 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIV--GLVRPDSG-----KILLDDED-ITKLPMHKRARLGIGYLPQEASIFRKLTVE 97 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEE--EEEecCCc-----eEEECCcc-cccCChHHHhhcCcccccccchHhhcCcHH
Confidence 68999999999999999999887543 55565544 67777664 22222222222 1222222 12 2
Q ss_pred cceeEee---cCCH------HHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCCC
Q 019381 190 ENVAYAR---AYNT------DHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSGR 238 (342)
Q Consensus 190 ~~i~~~~---~~~~------~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~~ 238 (342)
+|+..+- ..+. .++..+++.+ .+.....+|+.+++|++.+-.++-
T Consensus 98 dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPi---- 173 (243)
T COG1137 98 DNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI---- 173 (243)
T ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCch----
Confidence 3332111 1011 1122233222 122223689999999998876542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 239 GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 239 ~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+ +.++-+.++.+.. .|+-|++|.|-.+
T Consensus 174 ---a-----V~dIq~iI~~L~~-rgiGvLITDHNVR 200 (243)
T COG1137 174 ---A-----VIDIQRIIKHLKD-RGIGVLITDHNVR 200 (243)
T ss_pred ---h-----HHHHHHHHHHHHh-CCceEEEccccHH
Confidence 1 3344444444443 5999999999877
No 440
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=3.2e-05 Score=72.10 Aligned_cols=93 Identities=12% Similarity=0.087 Sum_probs=59.9
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCC--HHHHHHHHHHcCCChhhhhcceeEeec
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFR--PQRLLQIADRYGLNGADVLENVAYARA 197 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~--~~rl~~~~~~~~~~~~~~~~~i~~~~~ 197 (342)
+.+|.++.|+||+|+||||++..+|..... .+.+|.+++++..-. ...++..++..+++ +...
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~------~g~~V~lItaDtyR~gAveQLk~yae~lgvp---------v~~~ 267 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLK------QNRTVGFITTDTFRSGAVEQFQGYADKLDVE---------LIVA 267 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCCccCccHHHHHHHHhhcCCCC---------EEec
Confidence 457999999999999999999999876543 356899998874211 33444445444432 2223
Q ss_pred CCHHHHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 198 YNTDHQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 198 ~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
.+...+...+..+. ...+.++|+||.....
T Consensus 268 ~dp~dL~~al~~l~---~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 268 TSPAELEEAVQYMT---YVNCVDHILIDTVGRN 297 (407)
T ss_pred CCHHHHHHHHHHHH---hcCCCCEEEEECCCCC
Confidence 34444444333221 1245799999998775
No 441
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.32 E-value=4.5e-06 Score=84.69 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=35.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..| .++++.+
T Consensus 23 il~~vs~-~i~~Ge~~~l~G~nGsGKSTLl~~i~--Gl~~~~~G-----~i~~~g~ 70 (648)
T PRK10535 23 VLKGISL-DIYAGEMVAIVGASGSGKSTLMNILG--CLDKPTSG-----TYRVAGQ 70 (648)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCe-----EEEECCE
Confidence 4555554 68999999999999999999999665 55555443 4455544
No 442
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.31 E-value=1.9e-05 Score=66.31 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=53.4
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHH---HHHHHHHcCCChhhhhcceeEeecCCHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQR---LLQIADRYGLNGADVLENVAYARAYNTD 201 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~r---l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (342)
++.+.|+||+||||++..++..... .+.+|++++++. +.+.. +..+++..+ +.+.......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~------~g~~v~~i~~D~-~~~~~~~~l~~~~~~~~---------~~~~~~~~~~ 65 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK------KGKKVLLVAADT-YRPAAIEQLRVLGEQVG---------VPVFEEGEGK 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCC-CChHHHHHHHHhcccCC---------eEEEecCCCC
Confidence 6789999999999999998876654 356899999875 33222 222222222 2222222222
Q ss_pred HHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 202 HQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 202 ~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
...+++..........+.++||||.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~viiDt~g~~ 94 (173)
T cd03115 66 DPVSIAKRAIEHAREENFDVVIVDTAGRL 94 (173)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEECcccc
Confidence 22333333323334467889999997764
No 443
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.29 E-value=1.3e-05 Score=68.91 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=56.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCC---HHHHHHHHHHcCCChhhhhcceeEeecCCH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFR---PQRLLQIADRYGLNGADVLENVAYARAYNT 200 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~---~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (342)
.++.++||+|+||||.+-.+|+.... .+.+|.+++++. ++ .+.++..++.++++ +......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~------~~~~v~lis~D~-~R~ga~eQL~~~a~~l~vp---------~~~~~~~ 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL------KGKKVALISADT-YRIGAVEQLKTYAEILGVP---------FYVARTE 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEEEST-SSTHHHHHHHHHHHHHTEE---------EEESSTT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh------ccccceeecCCC-CCccHHHHHHHHHHHhccc---------cchhhcc
Confidence 37899999999999999999988776 367899998874 33 34555666666543 2222222
Q ss_pred HHHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 201 DHQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 201 ~~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
....+.+.+........+.++|+||.....
T Consensus 66 ~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 66 SDPAEIAREALEKFRKKGYDLVLIDTAGRS 95 (196)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEEE-SSS
T ss_pred hhhHHHHHHHHHHHhhcCCCEEEEecCCcc
Confidence 222233333333344567899999987654
No 444
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.29 E-value=7e-06 Score=73.86 Aligned_cols=118 Identities=16% Similarity=0.058 Sum_probs=62.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh-hhhcceeEeecCCHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA-DVLENVAYARAYNTDH 202 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 202 (342)
.-+.|.|+||||||||+..++ ...++.. +.++++...-.......+++..+..-++ .+..+..+.+.. ..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~--~~~~~~~-----G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~--~k 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLA--RILSTGI-----SQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC--PK 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHh--CccCCCC-----ceEEECCEEeecchhHHHHHHHhcccccccccccccccccc--hH
Confidence 578999999999999999766 3443332 3556655432111111344444433333 111122221111 11
Q ss_pred HHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 203 QSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 203 ~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.. .+...+...+|+++++|++... + .+...++.+ + .|.+||+++|-..
T Consensus 183 ~~----~~~~~i~~~~P~villDE~~~~------------e------~~~~l~~~~-~-~G~~vI~ttH~~~ 230 (270)
T TIGR02858 183 AE----GMMMLIRSMSPDVIVVDEIGRE------------E------DVEALLEAL-H-AGVSIIATAHGRD 230 (270)
T ss_pred HH----HHHHHHHhCCCCEEEEeCCCcH------------H------HHHHHHHHH-h-CCCEEEEEechhH
Confidence 11 1223344478999999997531 1 122223332 3 4899999999643
No 445
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.28 E-value=3.1e-05 Score=68.79 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=30.7
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
.+++++++|+++..++.. . ...+...|+++++ +.+||+++|..
T Consensus 179 ~~~~illlDEp~~~ld~~--------~----~~~~~~~l~~~~~--~~~ii~~~h~~ 221 (243)
T cd03272 179 DPAPFYLFDEIDAALDAQ--------Y----RTAVANMIKELSD--GAQFITTTFRP 221 (243)
T ss_pred CCCCEEEEECCccCCCHH--------H----HHHHHHHHHHHhC--CCEEEEEecCH
Confidence 458999999999876532 1 2356667777644 78888888874
No 446
>PLN03232 ABC transporter C family member; Provisional
Probab=98.28 E-value=5.8e-06 Score=91.11 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=79.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC---CCCceEEEecCC---------------CCCHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG---GEGKAMYIDAEG---------------TFRPQ 172 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~---~~~~vl~i~~e~---------------~~~~~ 172 (342)
.|+.+-- -+++|++++|+|++|||||||+..++ ...++..|+ ..+.+.|+.-+. +++.+
T Consensus 632 vL~~inl-~i~~Ge~vaIvG~sGSGKSTLl~lLl--G~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e 708 (1495)
T PLN03232 632 TLSDINL-EIPVGSLVAIVGGTGEGKTSLISAML--GELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708 (1495)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCcHHHHHHHHh--CCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHH
Confidence 3555555 79999999999999999999999654 444544442 134566665441 23344
Q ss_pred HHHHHHHHcCCChh-hhh-cce-eEeecC--C-HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHH
Q 019381 173 RLLQIADRYGLNGA-DVL-ENV-AYARAY--N-TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQM 246 (342)
Q Consensus 173 rl~~~~~~~~~~~~-~~~-~~i-~~~~~~--~-~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~ 246 (342)
++.+.++..++..+ ..+ +.. ..+... + .-.+.+.+.-+++.+ .+++++++|++++.++.. .++
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly--~~~~IlLLDEptSaLD~~-------t~~-- 777 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY--SNSDIYIFDDPLSALDAH-------VAH-- 777 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh--cCCCEEEEcCCccccCHH-------HHH--
Confidence 44444444433221 000 000 011000 0 112333444444443 678999999999987642 111
Q ss_pred HHHHHHHH-HHHHHHHhCCEEEEEecccc
Q 019381 247 HLAKFLRS-LQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 247 ~l~~i~~~-Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++. ++... .+.|+|+++|-..
T Consensus 778 ---~I~~~~l~~~l--~~kT~IlvTH~~~ 801 (1495)
T PLN03232 778 ---QVFDSCMKDEL--KGKTRVLVTNQLH 801 (1495)
T ss_pred ---HHHHHHhhhhh--cCCEEEEEECChh
Confidence 23332 23222 3678888888543
No 447
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.28 E-value=4.4e-06 Score=67.17 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=31.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.+..+.|.|+||+|||+++..++..... .+..++|++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~~~ 57 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR------PGAPFLYLNASD 57 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhc------CCCCeEEEehhh
Confidence 4678999999999999999998766542 346788888754
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.27 E-value=3.2e-07 Score=73.99 Aligned_cols=40 Identities=35% Similarity=0.571 Sum_probs=29.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
-+++|+++.|+|++|||||||+..++ ...++..| .++++.
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~--g~~~~~~G-----~i~~~~ 46 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALA--GLLPPDSG-----SILING 46 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHT--TSSHESEE-----EEEETT
T ss_pred EEcCCCEEEEEccCCCccccceeeec--cccccccc-----cccccc
Confidence 57899999999999999999999654 44443332 555554
No 449
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.26 E-value=4.2e-06 Score=89.09 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=78.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA---- 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~---- 186 (342)
.|..+.. -|++|+-+.|+|+.|+|||+|.+.+-. ...+ ..+.++||+-+ ....-+..+..+++..|+
T Consensus 1155 VLk~is~-~I~p~eKVGIVGRTGaGKSSL~~aLFR--l~e~-----~~G~I~IDgvd-I~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1155 VLKGISF-TIKPGEKVGIVGRTGAGKSSLILALFR--LVEP-----AEGEILIDGVD-ISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred hhcCceE-EEcCCceEEEeCCCCCCHHHHHHHHHH--hcCc-----cCCeEEEcCee-cccccHHHHHhcCeeeCCCCce
Confidence 3343433 689999999999999999999996543 3332 23478888754 222233334444443332
Q ss_pred ---hhhcceeEeecCCHHHHHHHH-----------------------------------HHHHHHhHhcCceEEEEeccc
Q 019381 187 ---DVLENVAYARAYNTDHQSRLL-----------------------------------LEAASMMVETRFALMIVDSAT 228 (342)
Q Consensus 187 ---~~~~~i~~~~~~~~~~~~~~l-----------------------------------~~l~~~~~~~~~~lvviD~l~ 228 (342)
++..|+.=+..++.+++.+.| ..+++++ .+.+++|+|+.|
T Consensus 1226 FsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL--r~skILvLDEAT 1303 (1381)
T KOG0054|consen 1226 FSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL--RKSKILVLDEAT 1303 (1381)
T ss_pred ecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh--ccCCEEEEeccc
Confidence 111222222233333333333 3333433 578999999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+..+.+.+ . -+-+.+++-- .+|||+.+.|--.
T Consensus 1304 AsVD~~TD--------~----lIQ~tIR~~F--~dcTVltIAHRl~ 1335 (1381)
T KOG0054|consen 1304 ASVDPETD--------A----LIQKTIREEF--KDCTVLTIAHRLN 1335 (1381)
T ss_pred ccCChHHH--------H----HHHHHHHHHh--cCCeEEEEeeccc
Confidence 98765321 0 1112233222 2799999999655
No 450
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.26 E-value=5.2e-06 Score=71.28 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=94.5
Q ss_pred CCCcE-EEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc-CCChhhhhcceeEeecC
Q 019381 121 ETGSI-TEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY-GLNGADVLENVAYARAY 198 (342)
Q Consensus 121 ~~G~l-~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~-~~~~~~~~~~i~~~~~~ 198 (342)
..|.+ +++.|||++||||++..+|...+.... +-.+.+|..+|+.+ +++... +.+....-.++.+.++.
T Consensus 134 ~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~-~~l~kkv~IiDers--------EIag~~~gvpq~~~g~R~dVld~c 204 (308)
T COG3854 134 QNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN-QFLPKKVGIIDERS--------EIAGCLNGVPQHGRGRRMDVLDPC 204 (308)
T ss_pred hcCceeeEEecCCCCChHHHHHHHHHHhhcccc-ccCCceEEEEeccc--------hhhccccCCchhhhhhhhhhcccc
Confidence 35667 999999999999999999887665321 11457899998764 233222 22222222233333333
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCC
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDG 278 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~ 278 (342)
...+ -++ ..+..+.|.++|+|++..... ... +...+ +.|+-+|.+.|-+. .+
T Consensus 205 pk~~--gmm----maIrsm~PEViIvDEIGt~~d------------------~~A-~~ta~-~~GVkli~TaHG~~-ie- 256 (308)
T COG3854 205 PKAE--GMM----MAIRSMSPEVIIVDEIGTEED------------------ALA-ILTAL-HAGVKLITTAHGNG-IE- 256 (308)
T ss_pred hHHH--HHH----HHHHhcCCcEEEEeccccHHH------------------HHH-HHHHH-hcCcEEEEeecccc-HH-
Confidence 2211 111 234457799999999987421 222 22222 45999999998765 22
Q ss_pred CcccCCCCccccCcccccc-ccceEEEEEeecCCeEEEEEEeCC
Q 019381 279 SAIFAGPQIKPIGGNIMAH-ASTTRLALRKGRGEERICKVISSP 321 (342)
Q Consensus 279 ~~~~~~~~~~p~~g~~~~~-~~d~~l~l~~~~~~~r~~~v~K~r 321 (342)
.-.++|.+.+.|.. ..+..+.+++-+|...+..+.|.+
T Consensus 257 -----dl~krp~lkdlv~i~af~r~~elsrr~g~g~v~~ird~~ 295 (308)
T COG3854 257 -----DLIKRPTLKDLVEIQAFDRGIELSRRRGPGTVVLIRDAP 295 (308)
T ss_pred -----HhhcChhHHHHHhhhHHHHHHHHhhccCCCeEEEEecCC
Confidence 12356777777763 456666666666655556666554
No 451
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.25 E-value=3.1e-06 Score=78.42 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=39.2
Q ss_pred HhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 215 VETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 215 ~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
...+++++++|++.++++.. . ...+++.+.++|++.++|+++++|-..
T Consensus 522 laerpn~~~iDEF~AhLD~~-------T-----A~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 522 LAERPNVLLIDEFAAHLDEL-------T-----AVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred HhcCCCcEEhhhhhhhcCHH-------H-----HHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 34779999999999987641 2 347889999999999999999988654
No 452
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.25 E-value=2.2e-06 Score=94.22 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=36.5
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC--CCCceEEEecC
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG--GEGKAMYIDAE 166 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~--~~~~vl~i~~e 166 (342)
|+.+-- -+++|+++.|.|++|||||||+..++ ...++..|. .++.+.|+.-+
T Consensus 442 l~~i~l-~i~~G~~~~I~G~~GsGKSTLl~~l~--G~~~~~~G~i~~~g~iayv~Q~ 495 (1490)
T TIGR01271 442 LKNISF-KLEKGQLLAVAGSTGSGKSSLLMMIM--GELEPSEGKIKHSGRISFSPQT 495 (1490)
T ss_pred eeeeEE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCceEEECCEEEEEeCC
Confidence 444444 68999999999999999999999664 555555542 12345566544
No 453
>PLN03140 ABC transporter G family member; Provisional
Probab=98.24 E-value=3e-06 Score=92.54 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=35.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++-++.. . ...+++.|++++++ |.|||+++|-..
T Consensus 1036 ~~P~lL~LDEPTsgLD~~--------~----a~~v~~~L~~l~~~-g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1036 ANPSIIFMDEPTSGLDAR--------A----AAIVMRTVRNTVDT-GRTVVCTIHQPS 1080 (1470)
T ss_pred hCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 679999999999977632 2 23788888888876 889999988654
No 454
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.24 E-value=3.3e-06 Score=92.18 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=29.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
..|+.+.+ -+++|+++.|.|++|+|||||+..++.
T Consensus 777 ~iL~~vs~-~i~~Ge~~aI~G~sGaGKSTLL~~Lag 811 (1394)
T TIGR00956 777 VILNNVDG-WVKPGTLTALMGASGAGKTTLLNVLAE 811 (1394)
T ss_pred EeeeCCEE-EEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 34666654 899999999999999999999997653
No 455
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.22 E-value=3e-05 Score=71.57 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=56.2
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCH---HHHHHHHHHcCCChhhhhcceeEee-
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP---QRLLQIADRYGLNGADVLENVAYAR- 196 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~- 196 (342)
.+|.++.++|+||+||||++..+|..... .+++|++++.+. +.. .++..++.+.+.+ +..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~------~g~~V~Li~~D~-~r~~a~eql~~~a~~~~i~---------~~~~ 175 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA------QGKKVLLAAGDT-FRAAAIEQLQVWGERVGVP---------VIAQ 175 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh------cCCeEEEEecCc-cchhhHHHHHHHHHHcCce---------EEEe
Confidence 46899999999999999999999876653 456888888763 322 2333444444432 111
Q ss_pred cCCHHHHHHHHHHHHHHhHhcCceEEEEecccccc
Q 019381 197 AYNTDHQSRLLLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 197 ~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
...........+.+ ......+.++||||....+.
T Consensus 176 ~~~~dpa~~v~~~l-~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 176 KEGADPASVAFDAI-QAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred CCCCCHHHHHHHHH-HHHHhCCCCEEEEeCCCCCc
Confidence 11111111111211 12234678999999987753
No 456
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.21 E-value=5.8e-05 Score=67.32 Aligned_cols=59 Identities=7% Similarity=0.178 Sum_probs=42.5
Q ss_pred CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCcccccc
Q 019381 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAH 297 (342)
Q Consensus 218 ~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~ 297 (342)
+++++++|+++..++. .. ...+...|+.++++ +.+||+++|-.. .+ .
T Consensus 177 ~p~~lllDEPt~~LD~--------~~----~~~l~~~i~~~~~~-g~~vi~isH~~~-------------------~~-~ 223 (247)
T cd03275 177 PAPFFVLDEVDAALDN--------TN----VGKVASYIREQAGP-NFQFIVISLKEE-------------------FF-S 223 (247)
T ss_pred CCCEEEEecccccCCH--------HH----HHHHHHHHHHhccC-CcEEEEEECCHH-------------------HH-h
Confidence 5899999999997753 22 23566777777655 899999999743 12 3
Q ss_pred ccceEEEEEeec
Q 019381 298 ASTTRLALRKGR 309 (342)
Q Consensus 298 ~~d~~l~l~~~~ 309 (342)
.+|.++.+++..
T Consensus 224 ~~d~i~~~~~~~ 235 (247)
T cd03275 224 KADALVGVYRDQ 235 (247)
T ss_pred hCCeEEEEEecC
Confidence 578888888864
No 457
>PLN03130 ABC transporter C family member; Provisional
Probab=98.20 E-value=3e-06 Score=93.69 Aligned_cols=145 Identities=21% Similarity=0.280 Sum_probs=78.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCC-CC--CCCceEEEecC---------------CCCCHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ-GG--GEGKAMYIDAE---------------GTFRPQ 172 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~-g~--~~~~vl~i~~e---------------~~~~~~ 172 (342)
.|+.+-- -+++|++++|+|++|||||||+..++.. .++.. |. ..+.+.|++-+ .+++..
T Consensus 632 vL~~inl-~i~~Ge~vaIvG~sGSGKSTLl~lLlG~--~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e 708 (1622)
T PLN03130 632 TLSNINL-DVPVGSLVAIVGSTGEGKTSLISAMLGE--LPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPE 708 (1622)
T ss_pred eeeceeE-EecCCCEEEEECCCCCCHHHHHHHHHHh--hccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHH
Confidence 3555555 7899999999999999999999976543 34444 21 13456666544 123344
Q ss_pred HHHHHHHHcCCChh-hhh-cce--eEee-cCC-HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHH
Q 019381 173 RLLQIADRYGLNGA-DVL-ENV--AYAR-AYN-TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQM 246 (342)
Q Consensus 173 rl~~~~~~~~~~~~-~~~-~~i--~~~~-~~~-~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~ 246 (342)
++.+.++..++..+ ..+ +.. .+-. ..+ .-.+.+.+..+++.+ .+++++++|++++.++.. ..+
T Consensus 709 ~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly--~~~~IlLLDEptSALD~~-------~~~-- 777 (1622)
T PLN03130 709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVY--SNSDVYIFDDPLSALDAH-------VGR-- 777 (1622)
T ss_pred HHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHh--CCCCEEEECCCccccCHH-------HHH--
Confidence 44454444443222 000 000 0100 000 112333344444443 678999999999987642 111
Q ss_pred HHHHHHH-HHHHHHHHhCCEEEEEecccc
Q 019381 247 HLAKFLR-SLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 247 ~l~~i~~-~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.++. .++.+. .+.|+|+++|-..
T Consensus 778 ---~I~~~~l~~~l--~~kTvIlVTH~l~ 801 (1622)
T PLN03130 778 ---QVFDKCIKDEL--RGKTRVLVTNQLH 801 (1622)
T ss_pred ---HHHHHHhhHHh--cCCEEEEEECCHh
Confidence 2322 233332 3678888888643
No 458
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.20 E-value=3.1e-06 Score=93.36 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=37.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC--CCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG--GEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~--~~~~vl~i~~e 166 (342)
.|+.+-- -+++|+++.|.|++|||||||+..++ ...++..|. .++.+.|+.-+
T Consensus 653 ~l~~isl-~i~~G~~v~IvG~~GsGKSTLl~~l~--g~~~~~~G~i~~~g~i~yv~Q~ 707 (1522)
T TIGR00957 653 TLNGITF-SIPEGALVAVVGQVGCGKSSLLSALL--AEMDKVEGHVHMKGSVAYVPQQ 707 (1522)
T ss_pred eeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCccCCcEEEECCEEEEEcCC
Confidence 4555555 78999999999999999999999665 455554441 12345565443
No 459
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=5.5e-06 Score=78.66 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=34.0
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++.+|+++.+++. .-+.+|-.+.+.+.+|+|+++|-+.
T Consensus 215 ~~pDlLLLDEPTNhLDv----------------~av~WLe~yL~t~~~T~liVSHDr~ 256 (582)
T KOG0062|consen 215 AKPDLLLLDEPTNHLDV----------------VAVAWLENYLQTWKITSLIVSHDRN 256 (582)
T ss_pred cCCCEEeecCCcccchh----------------HHHHHHHHHHhhCCceEEEEeccHH
Confidence 68999999999998763 2345677777788999999999765
No 460
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1e-05 Score=73.77 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
||.|-.=++++||||+|||.||..+|.. -++-||-.-.+ ++.+.|--..
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~-----------T~AtFIrvvgS-------ElVqKYiGEG------------- 229 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQ-----------TDATFIRVVGS-------ELVQKYIGEG------------- 229 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhc-----------cCceEEEeccH-------HHHHHHhccc-------------
Confidence 7888778999999999999999976532 23555544322 2222221111
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCC-CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSG-RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~-~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~ 272 (342)
..++..+-++...+.|.+|+||++-++-..-++. .+.-.+-++.+-++++.|..+-..-|+-||+.+.-
T Consensus 230 -----aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR 299 (406)
T COG1222 230 -----ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNR 299 (406)
T ss_pred -----hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCC
Confidence 1233444455667889999999999885433321 22235556667788888887777778888877543
No 461
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.19 E-value=3e-06 Score=92.50 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=36.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
.+++++++|++++-++.. . ...+++.|++++++.|.+||+++|-.
T Consensus 226 ~~p~vlllDEPTsgLD~~--------~----~~~i~~~L~~la~~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSA--------T----ALEFIRALKTSANILDTTPLVAIYQC 270 (1394)
T ss_pred hCCCEEEEeCCCCCcCHH--------H----HHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 579999999999987642 2 23788899999988899999988753
No 462
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.18 E-value=3.4e-05 Score=69.68 Aligned_cols=92 Identities=16% Similarity=0.246 Sum_probs=57.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCH---HHHHHHHHHcCCChhhhhcceeEee-
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP---QRLLQIADRYGLNGADVLENVAYAR- 196 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~- 196 (342)
.++.++.++|++|+||||.+..+|...+. .+.+|++++++. +.. ..++.+++..+.+ ++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~------~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~---------~~~~ 133 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKK------QGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVD---------VIKQ 133 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeE---------EEeC
Confidence 34679999999999999999999876654 467899998874 322 3444555555532 111
Q ss_pred --cCCHHHHHHHHHHHHHHhHhcCceEEEEecccccc
Q 019381 197 --AYNTDHQSRLLLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 197 --~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
..+... ............+.++||||......
T Consensus 134 ~~~~dp~~---~~~~~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 134 KEGADPAA---VAFDAIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred CCCCCHHH---HHHHHHHHHHHCCCCEEEEeCCCCCc
Confidence 112211 11111122234678999999987753
No 463
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7.1e-06 Score=79.35 Aligned_cols=118 Identities=17% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|+.|-.=++|.||||||||.|+..+|..... =|++-..+ ++.. |+ ...
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~v-----------Pf~~isAp-------eivS--Gv------------SGE 266 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGV-----------PFLSISAP-------EIVS--GV------------SGE 266 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcCC-----------ceEeecch-------hhhc--cc------------Ccc
Confidence 7777777999999999999999988755443 23332211 1110 00 111
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH--hCCEEEEEecccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE--FGVAVVITNQVVA 274 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~--~~~~vi~~~h~~~ 274 (342)
+...+.++++ ......|.+|+||++-++-+.--....++. ++.+.+++..+..+..+ .|..|+++.-+++
T Consensus 267 SEkkiRelF~----~A~~~aPcivFiDeIDAI~pkRe~aqreME--rRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 267 SEKKIRELFD----QAKSNAPCIVFIDEIDAITPKREEAQREME--RRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred cHHHHHHHHH----HHhccCCeEEEeecccccccchhhHHHHHH--HHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 1222223333 333467999999999998653211111122 23466666666666544 3678888887776
No 464
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.17 E-value=1.9e-05 Score=75.10 Aligned_cols=122 Identities=15% Similarity=0.271 Sum_probs=66.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|++++.-++|+||||||||+++..+|..... ..+.+... .+...+-..
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~---------~fi~i~~s---------~l~~k~~ge-------------- 222 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA---------TFIRVVGS---------EFVQKYLGE-------------- 222 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcCC---------CEEEEehH---------HHHHHhcch--------------
Confidence 7888888999999999999999988754321 23333221 111111000
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCC-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~-~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
. ...+..+........|.+|+||++..+........ +...+-.+.+..+++.+..+....++.||++++-....
T Consensus 223 ~----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 223 G----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred h----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 0 11122222334456799999999998865322111 11112222344555555444444577788877654433
No 465
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.16 E-value=3e-05 Score=67.59 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=32.0
Q ss_pred CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 218 ~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++++++|+++.-++. .. ...+.+.|+.++++ +.+||+++|...
T Consensus 151 ~~~~lllDEp~~~lD~--------~~----~~~~~~~l~~~~~~-~~tii~itH~~~ 194 (213)
T cd03279 151 RLEALFIDEGFGTLDP--------EA----LEAVATALELIRTE-NRMVGVISHVEE 194 (213)
T ss_pred CCCEEEEeCCcccCCH--------HH----HHHHHHHHHHHHhC-CCEEEEEECchH
Confidence 6799999999987653 11 23566677777654 889999999654
No 466
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.16 E-value=4.3e-05 Score=65.76 Aligned_cols=47 Identities=15% Similarity=-0.017 Sum_probs=33.6
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH--hCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE--FGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~--~~~~vi~~~h~~~ 274 (342)
..+++++++|+++..++. .. ...+.+.|+.++++ .+++||+++|...
T Consensus 129 ~~~p~illlDEP~~glD~--------~~----~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 129 VMESPFRCLDEFDVFMDM--------VN----RKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred ccCCCEEEecCcccccCH--------HH----HHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 368999999999987653 22 23667777777665 2468888887765
No 467
>PF13173 AAA_14: AAA domain
Probab=98.16 E-value=1.4e-05 Score=63.78 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=62.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDH 202 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (342)
+.++.|.|+.|+||||++.+++..... ..+++|++.+.. . ..... . ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~-------~~~~~yi~~~~~--~--~~~~~-----~---------------~~- 49 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP-------PENILYINFDDP--R--DRRLA-----D---------------PD- 49 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc-------cccceeeccCCH--H--HHHHh-----h---------------hh-
Confidence 568999999999999999999866541 357999998863 1 10000 0 00
Q ss_pred HHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHh-CCEEEEEecccc
Q 019381 203 QSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF-GVAVVITNQVVA 274 (342)
Q Consensus 203 ~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~-~~~vi~~~h~~~ 274 (342)
..+.+.... ..+..+|+||+++.+- .....++.+.... ++.++++.....
T Consensus 50 ---~~~~~~~~~-~~~~~~i~iDEiq~~~------------------~~~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 50 ---LLEYFLELI-KPGKKYIFIDEIQYLP------------------DWEDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred ---hHHHHHHhh-ccCCcEEEEehhhhhc------------------cHHHHHHHHHHhccCceEEEEccchH
Confidence 111111111 1267899999998751 3445666666665 788888866544
No 468
>PLN03140 ABC transporter G family member; Provisional
Probab=98.15 E-value=1.7e-05 Score=86.80 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=31.2
Q ss_pred cCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 107 SGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 107 tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.+...|+.+-+ -+++|++++|.||||||||||+..++
T Consensus 176 ~~~~IL~~vs~-~i~~Ge~~~llGpnGSGKSTLLk~La 212 (1470)
T PLN03140 176 TKLTILKDASG-IIKPSRMTLLLGPPSSGKTTLLLALA 212 (1470)
T ss_pred ccceeccCCeE-EEeCCeEEEEEcCCCCCHHHHHHHHh
Confidence 34556777765 89999999999999999999999765
No 469
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=7.1e-06 Score=73.74 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=83.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHH-HHHHHHHcCCChhhhhcceeEeec
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQR-LLQIADRYGLNGADVLENVAYARA 197 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~~ 197 (342)
-|....++++.||||+|||+||..+|-........ ...+...|.-. ..+ ..+++.
T Consensus 173 lIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~--~y~~~~liEin----shsLFSKWFs------------------ 228 (423)
T KOG0744|consen 173 LITWNRLILLHGPPGTGKTSLCKALAQKLSIRTND--RYYKGQLIEIN----SHSLFSKWFS------------------ 228 (423)
T ss_pred eeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecC--ccccceEEEEe----hhHHHHHHHh------------------
Confidence 35567899999999999999999887655442111 01111112111 100 011111
Q ss_pred CCHHHHHHHHHHHHHHhHhcC-ceEEEEecccccccc--ccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 198 YNTDHQSRLLLEAASMMVETR-FALMIVDSATALYRT--DFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 198 ~~~~~~~~~l~~l~~~~~~~~-~~lvviD~l~~l~~~--~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+..-+.+++.++..++...+ .=+|.||++-++... ...++.+..+-.+.+..++..|.++-+..|+.++.++.+..
T Consensus 229 ESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~ 308 (423)
T KOG0744|consen 229 ESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD 308 (423)
T ss_pred hhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH
Confidence 112233445555556665544 567889998877432 22233445666677889999999998888999999998887
Q ss_pred ccCC
Q 019381 275 QVDG 278 (342)
Q Consensus 275 ~~~~ 278 (342)
..+.
T Consensus 309 siD~ 312 (423)
T KOG0744|consen 309 SIDV 312 (423)
T ss_pred HHHH
Confidence 6654
No 470
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.13 E-value=6.4e-06 Score=71.29 Aligned_cols=46 Identities=4% Similarity=0.178 Sum_probs=34.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHH-HHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLA-KFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~-~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|+++..++.. . .. .+.+.|+.++++.+.+||+++|...
T Consensus 138 ~~p~illlDEP~~~LD~~--------~----~~~~l~~~l~~~~~~~~~~iiiitH~~~ 184 (204)
T cd03240 138 SNCGILALDEPTTNLDEE--------N----IEESLAEIIEERKSQKNFQLIVITHDEE 184 (204)
T ss_pred cCCCEEEEcCCccccCHH--------H----HHHHHHHHHHHHHhccCCEEEEEEecHH
Confidence 679999999999876532 1 23 5667777777766889999999743
No 471
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=1.7e-05 Score=74.91 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=54.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCC---HHHHHHHHHHcCCChhhhhcceeEe
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFR---PQRLLQIADRYGLNGADVLENVAYA 195 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~---~~rl~~~~~~~~~~~~~~~~~i~~~ 195 (342)
|..++.++.|+|++|+||||++.++|...... .+.+|.+++++. +. ...++..++..+++. .
T Consensus 219 g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~-----~G~~V~Lit~Dt-~R~aA~eQLk~yAe~lgvp~---------~ 283 (432)
T PRK12724 219 GKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLH-----MGKSVSLYTTDN-YRIAAIEQLKRYADTMGMPF---------Y 283 (432)
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCeEEEecccc-hhhhHHHHHHHHHHhcCCCe---------e
Confidence 34567899999999999999999998755332 356788888774 22 223333344444321 1
Q ss_pred ecCCHHHHHHHHHHHHHHhHhcCceEEEEecccc
Q 019381 196 RAYNTDHQSRLLLEAASMMVETRFALMIVDSATA 229 (342)
Q Consensus 196 ~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~ 229 (342)
. ...... +...+...+.++|+||....
T Consensus 284 ~---~~~~~~----l~~~l~~~~~D~VLIDTaGr 310 (432)
T PRK12724 284 P---VKDIKK----FKETLARDGSELILIDTAGY 310 (432)
T ss_pred e---hHHHHH----HHHHHHhCCCCEEEEeCCCC
Confidence 1 111222 22223346789999998554
No 472
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.11 E-value=1.4e-05 Score=69.03 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=26.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHccc
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQL 149 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~ 149 (342)
....|+++.|+||+|+||||++..++....+
T Consensus 25 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5677899999999999999999988755443
No 473
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.11 E-value=4e-05 Score=69.08 Aligned_cols=95 Identities=23% Similarity=0.234 Sum_probs=51.0
Q ss_pred CCCCC-cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEE-ecCCCCCHHHHHHHHHHcCCChhhhhcceeEee
Q 019381 119 GVETG-SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI-DAEGTFRPQRLLQIADRYGLNGADVLENVAYAR 196 (342)
Q Consensus 119 Gi~~G-~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i-~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~ 196 (342)
+++++ .+++|+|++|+||||++..++..... ....+.++ ....+ ....+..++..++.+...
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~------~~~~~~~~~~~~~~-~~~~l~~i~~~lG~~~~~--------- 101 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQ------ERVVAAKLVNTRVD-AEDLLRMVAADFGLETEG--------- 101 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC------CCeEEeeeeCCCCC-HHHHHHHHHHHcCCCCCC---------
Confidence 45544 48999999999999999988654321 11112232 22221 223444566666654321
Q ss_pred cCCHHHHHHHH-HHHHHHhHhcCceEEEEeccccc
Q 019381 197 AYNTDHQSRLL-LEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 197 ~~~~~~~~~~l-~~l~~~~~~~~~~lvviD~l~~l 230 (342)
.+.......+ ..+.......+..++|||+...+
T Consensus 102 -~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l 135 (269)
T TIGR03015 102 -RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNL 135 (269)
T ss_pred -CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccC
Confidence 1111112222 22223333456789999998775
No 474
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.10 E-value=0.00013 Score=69.63 Aligned_cols=92 Identities=22% Similarity=0.297 Sum_probs=53.6
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHH---HHHHHHcCCChhhhhcceeEeecCC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRL---LQIADRYGLNGADVLENVAYARAYN 199 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl---~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (342)
..++.++|++|+||||++..+|..... .+.+|+.++++. +.+..+ +..++..+. -++...+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~------~G~kV~lV~~D~-~R~aA~eQLk~~a~~~~v---------p~~~~~~ 163 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQR------KGFKPCLVCADT-FRAGAFDQLKQNATKARI---------PFYGSYT 163 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------CCCCEEEEcCcc-cchhHHHHHHHHhhccCC---------eEEeecC
Confidence 368999999999999999999876543 456899998873 333222 222333222 1222111
Q ss_pred HHHHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 200 TDHQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 200 ~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
..............+...+.++||||....+
T Consensus 164 ~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 164 ESDPVKIASEGVEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 1111122222222233357899999988754
No 475
>PRK14974 cell division protein FtsY; Provisional
Probab=98.09 E-value=4.6e-05 Score=70.65 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=55.9
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCH---HHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP---QRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
++.++.++|+||+||||++..+|..... .+.+|+++++.. ++. .+++.+++.++.+. ....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~------~g~~V~li~~Dt-~R~~a~eqL~~~a~~lgv~v---------~~~~ 202 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK------NGFSVVIAAGDT-FRAGAIEQLEEHAERLGVKV---------IKHK 202 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEecCCc-CcHHHHHHHHHHHHHcCCce---------eccc
Confidence 3579999999999999999988865433 356788887663 332 34555555555431 1111
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEecccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
........+..........+.++|+||....+.
T Consensus 203 ~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 203 YGADPAAVAYDAIEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEECCCccC
Confidence 111111222222222334567899999987653
No 476
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2e-05 Score=76.33 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=76.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhh
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVL 189 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~ 189 (342)
+++=+.+ |+..-.=++++||||||||.|+..+|... +.=||+-.++ +++..|--
T Consensus 534 pd~~k~l--Gi~~PsGvLL~GPPGCGKTLlAKAVANEa-----------g~NFisVKGP-------ELlNkYVG------ 587 (802)
T KOG0733|consen 534 PDLFKAL--GIDAPSGVLLCGPPGCGKTLLAKAVANEA-----------GANFISVKGP-------ELLNKYVG------ 587 (802)
T ss_pred HHHHHHh--CCCCCCceEEeCCCCccHHHHHHHHhhhc-----------cCceEeecCH-------HHHHHHhh------
Confidence 3444444 45444558999999999999999766332 3446666553 33322211
Q ss_pred cceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Q 019381 190 ENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVIT 269 (342)
Q Consensus 190 ~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~ 269 (342)
+-...+.++........|.+|++|++-++.+.--.+ ....-.+.+..++..|..+-.+.|+.||..
T Consensus 588 ------------ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~--~s~~s~RvvNqLLtElDGl~~R~gV~viaA 653 (802)
T KOG0733|consen 588 ------------ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE--GSSVSSRVVNQLLTELDGLEERRGVYVIAA 653 (802)
T ss_pred ------------hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC--CchhHHHHHHHHHHHhcccccccceEEEee
Confidence 112233344444455779999999999997643222 223334458888999998888888888876
Q ss_pred ecc
Q 019381 270 NQV 272 (342)
Q Consensus 270 ~h~ 272 (342)
+.-
T Consensus 654 TNR 656 (802)
T KOG0733|consen 654 TNR 656 (802)
T ss_pred cCC
Confidence 543
No 477
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.08 E-value=4.7e-06 Score=73.03 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=25.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcc
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQ 148 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~ 148 (342)
..+.++++.|+||+|+|||+++.+++....
T Consensus 26 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 55 (222)
T cd03285 26 TRGKSRFLIITGPNMGGKSTYIRQIGVIVL 55 (222)
T ss_pred eecCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 456789999999999999999999876543
No 478
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.08 E-value=6.1e-05 Score=72.72 Aligned_cols=147 Identities=17% Similarity=0.234 Sum_probs=82.2
Q ss_pred cc-CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC-----CC--CceEEEecC-----------
Q 019381 106 TS-GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG-----GE--GKAMYIDAE----------- 166 (342)
Q Consensus 106 ~t-g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~-----~~--~~vl~i~~e----------- 166 (342)
|| |.--++.+.. -++.|+-.+|+||+|||||.|...++ .+.|...|. .+ +.++|+--.
T Consensus 444 Pt~g~~lie~Ls~-~V~~g~~LLItG~sG~GKtSLlRvlg--gLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQ 520 (659)
T KOG0060|consen 444 PTNGDLLIENLSL-EVPSGQNLLITGPSGCGKTSLLRVLG--GLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQ 520 (659)
T ss_pred CCCCceeeeeeee-EecCCCeEEEECCCCCchhHHHHHHh--cccccCCCeEEecccCCCCceEEecCCCCccccchhhe
Confidence 44 5555666666 89999999999999999999999655 555433331 11 234444321
Q ss_pred ------------CCCCHHHHHHHHHHcCCCh-hhhhccee------EeecCCHHHHHHHHHHHHHHhHhcCceEEEEecc
Q 019381 167 ------------GTFRPQRLLQIADRYGLNG-ADVLENVA------YARAYNTDHQSRLLLEAASMMVETRFALMIVDSA 227 (342)
Q Consensus 167 ------------~~~~~~rl~~~~~~~~~~~-~~~~~~i~------~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l 227 (342)
...+..++.++++..++.. .+...++. +.+..+.-+... +. .+.+.-++|++.|+|+-
T Consensus 521 vIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR-La--~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 521 VIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR-LA--FARLFYHKPKFAILDEC 597 (659)
T ss_pred eeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH-HH--HHHHHhcCCceEEeech
Confidence 1122234444433322110 00001111 111222222211 11 23344588999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 228 TALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 228 ~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++....+ +=..+-+.+++.|+|.|-+.|-.+
T Consensus 598 TSAv~~d----------------vE~~~Yr~~r~~giT~iSVgHRkS 628 (659)
T KOG0060|consen 598 TSAVTED----------------VEGALYRKCREMGITFISVGHRKS 628 (659)
T ss_pred hhhccHH----------------HHHHHHHHHHHcCCeEEEeccHHH
Confidence 9876532 223456667788999999998654
No 479
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.08 E-value=6.8e-05 Score=67.06 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=31.5
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
.+++++++|++++.++. .. ...+...|+++++ +.+||+++|-.
T Consensus 187 ~~~~illlDEPt~~ld~--------~~----~~~~~~~l~~~~~--g~~ii~iSH~~ 229 (251)
T cd03273 187 KPAPMYILDEVDAALDL--------SH----TQNIGRMIKTHFK--GSQFIVVSLKE 229 (251)
T ss_pred cCCCEEEEeCCCcCCCH--------HH----HHHHHHHHHHHcC--CCEEEEEECCH
Confidence 46799999999987653 22 2366667777643 78999999984
No 480
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.07 E-value=6.3e-05 Score=63.58 Aligned_cols=45 Identities=7% Similarity=0.113 Sum_probs=32.9
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++...++.. . ...+.+.|+.+++. +.++|+++|-..
T Consensus 115 ~~p~llilDEp~~~LD~~--------~----~~~i~~~L~~~~~~-g~tiIiiSH~~~ 159 (178)
T cd03239 115 KPSPFYVLDEIDAALDPT--------N----RRRVSDMIKEMAKH-TSQFIVITLKKE 159 (178)
T ss_pred CCCCEEEEECCCCCCCHH--------H----HHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 578999999999876532 2 12566677777654 789999998753
No 481
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=8.3e-05 Score=69.76 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=43.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCC-CceEEEecCCCC--CHHHHHHHHHHcCCC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGE-GKAMYIDAEGTF--RPQRLLQIADRYGLN 184 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~-~~vl~i~~e~~~--~~~rl~~~~~~~~~~ 184 (342)
-+..|.++.|+||+|+||||++..++...... .+ .+|.+++++..- ..+.++.+++.++.+
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~-----~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~ 196 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMR-----FGASKVALLTTDSYRIGGHEQLRIFGKILGVP 196 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCeEEEEecccccccHHHHHHHHHHHcCCc
Confidence 46778999999999999999999998765432 12 468888876421 234555666666643
No 482
>PRK10867 signal recognition particle protein; Provisional
Probab=98.07 E-value=6.3e-05 Score=72.03 Aligned_cols=92 Identities=20% Similarity=0.279 Sum_probs=57.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC-CCceEEEecCCCCCHH---HHHHHHHHcCCChhhhhcceeEeecC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG-EGKAMYIDAEGTFRPQ---RLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~-~~~vl~i~~e~~~~~~---rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
..++.++|++|+||||++..+|..... . +.+|++++++. +.+. .++.+++..+++ ++...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~------~~G~kV~lV~~D~-~R~aa~eQL~~~a~~~gv~---------v~~~~ 163 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKK------KKKKKVLLVAADV-YRPAAIEQLKTLGEQIGVP---------VFPSG 163 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH------hcCCcEEEEEccc-cchHHHHHHHHHHhhcCCe---------EEecC
Confidence 479999999999999999999876654 3 67899999874 3433 333445444432 22111
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
.......+...+.......+.++||||....+
T Consensus 164 ~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 164 DGQDPVDIAKAALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 11111222333333344467899999988765
No 483
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.06 E-value=0.0001 Score=61.48 Aligned_cols=44 Identities=27% Similarity=0.440 Sum_probs=33.3
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
.+-.+.|+|++-+-+. ..|+ -+++..|+++++. |.-+|+.+|..
T Consensus 145 ~~~GiYiLDEPEa~LS---------p~RQ---lella~l~~la~s-GaQ~IiATHSP 188 (233)
T COG3910 145 NGQGIYILDEPEAALS---------PSRQ---LELLAILRDLADS-GAQIIIATHSP 188 (233)
T ss_pred ccCceEEecCccccCC---------HHHH---HHHHHHHHHHHhc-CCeEEEEecCh
Confidence 4678999999988654 2332 4778889999987 68888888864
No 484
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.04 E-value=1.3e-05 Score=69.96 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.0
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcc
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQ 148 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~ 148 (342)
++++|+||+|+|||||+..++....
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~ 55 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIAL 55 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHH
Confidence 8999999999999999999875443
No 485
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.04 E-value=7.5e-06 Score=69.20 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=29.8
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
..+.-+.|.|++|+|||.|+..++..+.. .+..|+|++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~------~g~~v~f~~~~ 84 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR------KGYSVLFITAS 84 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEEHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc------CCcceeEeecC
Confidence 34667999999999999999998876665 46789999764
No 486
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.04 E-value=2.9e-05 Score=66.90 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHHc
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.+++|+||+||||||++..++...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999998766543
No 487
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=2.6e-05 Score=81.93 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=28.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
-|+.+.| -+.||-+++|.|+||+|||||+.-+|
T Consensus 806 LL~~V~G-~~kPG~LTALMG~SGAGKTTLLdvLA 838 (1391)
T KOG0065|consen 806 LLNNVSG-AFKPGVLTALMGESGAGKTTLLDVLA 838 (1391)
T ss_pred hhhcCce-EecCCceeehhcCCCCchHHHHHHHh
Confidence 3555554 79999999999999999999999766
No 488
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.02 E-value=4.3e-05 Score=74.48 Aligned_cols=131 Identities=15% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|+++..-++|+||||||||+++..++.....+... ..+....|++...+ .+...+ . ..
T Consensus 212 gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~-~~~~~~~fl~v~~~-------eLl~ky-------------v-Ge 269 (512)
T TIGR03689 212 DLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA-ETGDKSYFLNIKGP-------ELLNKY-------------V-GE 269 (512)
T ss_pred cCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-ccCCceeEEeccch-------hhcccc-------------c-ch
Confidence 56666669999999999999999887655432110 01223445543321 111000 0 00
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~ 272 (342)
....+..++..+........+.+|+||++..++.....+.....+ ...+..++..|..+....++.||.++..
T Consensus 270 te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e-~~il~~LL~~LDgl~~~~~ViVI~ATN~ 342 (512)
T TIGR03689 270 TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVE-TTVVPQLLSELDGVESLDNVIVIGASNR 342 (512)
T ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHH-HHHHHHHHHHhcccccCCceEEEeccCC
Confidence 111222333333333334568899999999987542211111111 2234556665555544345666655433
No 489
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.02 E-value=3.6e-05 Score=63.22 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=32.3
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcc
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQ 148 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~ 148 (342)
.+.|+.+.. .+..|+.+.+.|++|+|||||+..+-.+..
T Consensus 24 LpV~~~vsl-sV~aGECvvL~G~SG~GKStllr~LYaNY~ 62 (235)
T COG4778 24 LPVLRNVSL-SVNAGECVVLHGPSGSGKSTLLRSLYANYL 62 (235)
T ss_pred eeeeeceeE-EecCccEEEeeCCCCCcHHHHHHHHHhccC
Confidence 355677666 789999999999999999999998765554
No 490
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.01 E-value=1.5e-05 Score=69.64 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=26.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHccc
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQL 149 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~ 149 (342)
.+.+|+++.|.||+|+|||+|+..++....+
T Consensus 27 ~~~~g~~~~itG~N~~GKStll~~i~~~~~l 57 (222)
T cd03287 27 SAEGGYCQIITGPNMGGKSSYIRQVALITIM 57 (222)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998875544
No 491
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=0.00014 Score=68.11 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=56.3
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCH---HHHHHHHHHcCCChhhhhcceeEeecCC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP---QRLLQIADRYGLNGADVLENVAYARAYN 199 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (342)
+.++.|+|++|+||||++..+|..... .+.+|.+++++. +.. ..++..++..+ +.+....+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~------~GkkVglI~aDt-~RiaAvEQLk~yae~lg---------ipv~v~~d 304 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHG------KKKTVGFITTDH-SRIGTVQQLQDYVKTIG---------FEVIAVRD 304 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEEecCC-cchHHHHHHHHHhhhcC---------CcEEecCC
Confidence 468999999999999999999876543 466899998874 332 23333333333 22333334
Q ss_pred HHHHHHHHHHHHHHhHhcCceEEEEecccccc
Q 019381 200 TDHQSRLLLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 200 ~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
...+...+..+ ....+.++|+||......
T Consensus 305 ~~~L~~aL~~l---k~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 305 EAAMTRALTYF---KEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHHHHHHHHH---HhccCCCEEEEeCccccC
Confidence 44444333322 112368999999887753
No 492
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.00 E-value=0.00014 Score=69.92 Aligned_cols=91 Identities=21% Similarity=0.261 Sum_probs=54.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCH---HHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP---QRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
+..++.++|++|+||||++..+|..... .+.+|++++++. +.+ ..++.+++..+.+ +....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~------~g~kV~lV~~D~-~R~aa~eQL~~la~~~gvp---------~~~~~ 157 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK------KGLKVGLVAADT-YRPAAYDQLKQLAEKIGVP---------FYGDP 157 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEecCCC-CCHHHHHHHHHHHHHcCCc---------EEecC
Confidence 3568999999999999999999876554 356899998874 333 3344455555432 11111
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
........+..+...+. ..++||||....+
T Consensus 158 ~~~d~~~i~~~al~~~~--~~DvVIIDTAGr~ 187 (437)
T PRK00771 158 DNKDAVEIAKEGLEKFK--KADVIIVDTAGRH 187 (437)
T ss_pred CccCHHHHHHHHHHHhh--cCCEEEEECCCcc
Confidence 11112222222222222 2389999988654
No 493
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.00 E-value=0.00012 Score=70.28 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=67.8
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
...+.||+..+|.++ -+.+|+.+.|.|++|+|||+|+..++. ...+ ...++.+.+|..-.. .++.+.
T Consensus 139 ~~~l~tg~~vid~l~--~i~~Gq~i~I~G~sG~GKStLl~~I~~--~~~~-----~~gvI~~~Gerg~ev---~e~~~~- 205 (438)
T PRK07721 139 REPMEVGVRAIDSLL--TVGKGQRVGIFAGSGVGKSTLMGMIAR--NTSA-----DLNVIALIGERGREV---REFIER- 205 (438)
T ss_pred ccccccchhhhheee--eecCCcEEEEECCCCCCHHHHHHHHhc--ccCC-----CeEEEEEEecCCccH---HHHHHh-
Confidence 446889999999995 699999999999999999999986653 2222 234667766654222 222221
Q ss_pred CCChhhhhcceeEeecCCHHHHHHH------HHHHHHHhHhcCceEEEEeccccccc
Q 019381 182 GLNGADVLENVAYARAYNTDHQSRL------LLEAASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~------l~~l~~~~~~~~~~lvviD~l~~l~~ 232 (342)
..+...+...+.++...+..-.... +..++.+.....-=++++|+++.+..
T Consensus 206 ~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~ 262 (438)
T PRK07721 206 DLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAM 262 (438)
T ss_pred hcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHH
Confidence 1112222233444433222111111 11222222223345889999998754
No 494
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.99 E-value=7.3e-06 Score=69.79 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=30.7
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHH-HHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFL-RSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~-~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+++++++|++..-.+. .++. .++ ..++.+.++.++++|+++|...
T Consensus 77 ~~~~llllDEp~~g~d~--------~~~~----~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 77 TENSLVLLDELGRGTST--------YDGV----AIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred CCCeEEEEecCCCCCCH--------HHHH----HHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 47899999999886543 2222 232 3345555545899999999874
No 495
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.3e-05 Score=75.92 Aligned_cols=123 Identities=17% Similarity=0.320 Sum_probs=80.6
Q ss_pred hhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhccee
Q 019381 114 KILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVA 193 (342)
Q Consensus 114 ~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~ 193 (342)
++++-|+++.+=++++||||+|||.+|+.+|-++. .-|+|-.++ +++..|
T Consensus 696 eLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-----------L~FlSVKGP-------ELLNMY------------ 745 (953)
T KOG0736|consen 696 ELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-----------LNFLSVKGP-------ELLNMY------------ 745 (953)
T ss_pred hhhhccccccceeEEECCCCCchHHHHHHHHhhce-----------eeEEeecCH-------HHHHHH------------
Confidence 35666999888899999999999999998876654 346666653 222211
Q ss_pred EeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccC-C-CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Q 019381 194 YARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFS-G-RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQ 271 (342)
Q Consensus 194 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~-~-~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h 271 (342)
+- .+.+.+.+.+++ .+...|.+|++|++-++.+.--. | .|+..+| .+.+++..|..+.+.....|+++.-
T Consensus 746 VG--qSE~NVR~VFer----AR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDR--VVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 746 VG--QSEENVREVFER----ARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDR--VVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred hc--chHHHHHHHHHH----hhccCCeEEEeccccccCccCCCCCCccccHHH--HHHHHHHHhhcccCCCCCceEEEec
Confidence 11 112222233333 34467999999999999764222 2 2445555 4788888888888655566777766
Q ss_pred ccc
Q 019381 272 VVA 274 (342)
Q Consensus 272 ~~~ 274 (342)
+|+
T Consensus 818 TNR 820 (953)
T KOG0736|consen 818 TNR 820 (953)
T ss_pred CCC
Confidence 665
No 496
>PTZ00243 ABC transporter; Provisional
Probab=97.99 E-value=1.3e-05 Score=88.58 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=36.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC--CCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG--GEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~--~~~~vl~i~~e 166 (342)
.|+.+-- -+++|+++.|.|++|||||||+..++ ...++..|. ....+.|+.-+
T Consensus 675 iL~~isl-~i~~G~~~~IiG~nGsGKSTLL~~i~--G~~~~~~G~i~~~~~i~yv~Q~ 729 (1560)
T PTZ00243 675 LLRDVSV-SVPRGKLTVVLGATGSGKSTLLQSLL--SQFEISEGRVWAERSIAYVPQQ 729 (1560)
T ss_pred eEeeeEE-EECCCCEEEEECCCCCcHHHHHHHHh--cCCCCCCcEEEECCeEEEEeCC
Confidence 3444444 68999999999999999999999765 454544441 12345565544
No 497
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=9e-05 Score=69.36 Aligned_cols=149 Identities=14% Similarity=0.187 Sum_probs=84.1
Q ss_pred ccccCChhhHhhhc---CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC----CCceEEEecCCC--C--CHH
Q 019381 104 QITSGSRELDKILE---GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG----EGKAMYIDAEGT--F--RPQ 172 (342)
Q Consensus 104 ~i~tg~~~LD~~l~---GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~----~~~vl~i~~e~~--~--~~~ 172 (342)
.+.+|++.-+.++- =||...+-+.|+||+|.|||||+..+. .-+.|..|.. .-++-||+-... + ...
T Consensus 591 ~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~--Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eet 668 (807)
T KOG0066|consen 591 DVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLI--GKLDPNDGELRKNHRLRIGWFDQHANEALNGEET 668 (807)
T ss_pred cccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHh--cCCCCCcchhhccceeeeechhhhhHHhhccccC
Confidence 45677765555443 289999999999999999999999654 4444444422 125566653210 0 000
Q ss_pred HHHHHHHHcCCChhhhhc------------ceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcc
Q 019381 173 RLLQIADRYGLNGADVLE------------NVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240 (342)
Q Consensus 173 rl~~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~ 240 (342)
-...+...|+++.++... .|.+-.........-.+ +.+.-.+|+++|+|+++..++-
T Consensus 669 p~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal----aeLal~~PDvlILDEPTNNLDI------- 737 (807)
T KOG0066|consen 669 PVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL----AELALGGPDVLILDEPTNNLDI------- 737 (807)
T ss_pred HHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH----HHHhcCCCCEEEecCCCCCcch-------
Confidence 111333445555442211 11111111111111111 2223367999999999987642
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 241 ~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+-+..|-....+|+-.||+++|--+
T Consensus 738 ---------ESIDALaEAIney~GgVi~VsHDeR 762 (807)
T KOG0066|consen 738 ---------ESIDALAEAINEYNGGVIMVSHDER 762 (807)
T ss_pred ---------hhHHHHHHHHHhccCcEEEEecccc
Confidence 3344556666788999999999765
No 498
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.98 E-value=4.5e-05 Score=73.20 Aligned_cols=88 Identities=20% Similarity=0.318 Sum_probs=55.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcc-cCCCCCCCCCceEEEecCCCCCH---HHHHHHHHHcCCChhhhhcceeEeec
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQ-LPLDQGGGEGKAMYIDAEGTFRP---QRLLQIADRYGLNGADVLENVAYARA 197 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~-~~~~~g~~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~~ 197 (342)
.|.++.|+||+|+||||++..+|.... .. .+.+|.+++++. +.. ..++.+++.++++ +...
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-----~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp---------~~~~ 284 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-----GKKKVALITLDT-YRIGAVEQLKTYAKIMGIP---------VEVV 284 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEECCc-cHHHHHHHHHHHHHHhCCc---------eEcc
Confidence 477999999999999999999987765 31 356899999874 221 2233344444432 2222
Q ss_pred CCHHHHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 198 YNTDHQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 198 ~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
.+..++...+.. ..+.++|+||.....
T Consensus 285 ~~~~~l~~~l~~------~~~~DlVlIDt~G~~ 311 (424)
T PRK05703 285 YDPKELAKALEQ------LRDCDVILIDTAGRS 311 (424)
T ss_pred CCHHhHHHHHHH------hCCCCEEEEeCCCCC
Confidence 333333333321 135799999988653
No 499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.98 E-value=5.2e-05 Score=68.98 Aligned_cols=87 Identities=23% Similarity=0.327 Sum_probs=53.3
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCC---HHHHHHHHHHcCCChhhhhcceeEeec
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFR---PQRLLQIADRYGLNGADVLENVAYARA 197 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~---~~rl~~~~~~~~~~~~~~~~~i~~~~~ 197 (342)
+.+.++.|+||+|+||||++..++....... .+.+|.+++++. +. ...+..+++.++.+ +...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~----g~~~V~li~~D~-~r~~a~eql~~~~~~~~~p---------~~~~ 257 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEH----GNKKVALITTDT-YRIGAVEQLKTYAKILGVP---------VKVA 257 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHc----CCCeEEEEECCc-cchhHHHHHHHHHHHhCCc---------eecc
Confidence 4678999999999999999999987765410 126899999874 22 22333334333432 2222
Q ss_pred CCHHHHHHHHHHHHHHhHhcCceEEEEecc
Q 019381 198 YNTDHQSRLLLEAASMMVETRFALMIVDSA 227 (342)
Q Consensus 198 ~~~~~~~~~l~~l~~~~~~~~~~lvviD~l 227 (342)
.+...+...+.. + .+.++|+||..
T Consensus 258 ~~~~~l~~~l~~----~--~~~d~vliDt~ 281 (282)
T TIGR03499 258 RDPKELRKALDR----L--RDKDLILIDTA 281 (282)
T ss_pred CCHHHHHHHHHH----c--cCCCEEEEeCC
Confidence 233333333322 2 34799999975
No 500
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=97.97 E-value=4e-05 Score=80.32 Aligned_cols=146 Identities=13% Similarity=0.190 Sum_probs=81.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhh--h
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGAD--V 188 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~--~ 188 (342)
..+.+-. .+++|++..+.|++|+||||+...+. +..++..| .+|+.+...-......+..+.+|+-|+. +
T Consensus 580 Av~~ls~-~V~~gecfgLLG~NGAGKtT~f~mlt--G~~~~t~G-----~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l 651 (885)
T KOG0059|consen 580 AVRGLSF-AVPPGECFGLLGVNGAGKTTTFKMLT--GETKPTSG-----EALIKGHDITVSTDFQQVRKQLGYCPQFDAL 651 (885)
T ss_pred hhcceEE-EecCCceEEEecCCCCCchhhHHHHh--CCccCCcc-----eEEEecCccccccchhhhhhhcccCCchhhh
Confidence 3444444 89999999999999999999999544 55554433 6677544321111111244455654431 1
Q ss_pred hc------ceeE---eecCCHHHHHHHHHHH--------------------------HHHhHhcCceEEEEecccccccc
Q 019381 189 LE------NVAY---ARAYNTDHQSRLLLEA--------------------------ASMMVETRFALMIVDSATALYRT 233 (342)
Q Consensus 189 ~~------~i~~---~~~~~~~~~~~~l~~l--------------------------~~~~~~~~~~lvviD~l~~l~~~ 233 (342)
++ .+.+ .+.....++...++.+ .+...-.+|++|++|++++-+++
T Consensus 652 ~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP 731 (885)
T KOG0059|consen 652 WEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDP 731 (885)
T ss_pred hhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCH
Confidence 10 0100 0111111111111111 01111256999999999987654
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Q 019381 234 DFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 277 (342)
Q Consensus 234 ~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~ 277 (342)
..| +.+.+.+.++.+..+ +||+|+|.....+
T Consensus 732 --------~ar----r~lW~ii~~~~k~g~-aiiLTSHsMeE~E 762 (885)
T KOG0059|consen 732 --------KAR----RHLWDIIARLRKNGK-AIILTSHSMEEAE 762 (885)
T ss_pred --------HHH----HHHHHHHHHHHhcCC-EEEEEcCCHHHHH
Confidence 222 267777777766544 9999999987443
Done!