Query 019381
Match_columns 342
No_of_seqs 270 out of 3338
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 15:12:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lda_A DNA repair protein RAD5 100.0 3.4E-53 1.2E-57 399.5 35.2 326 17-342 72-397 (400)
2 1v5w_A DMC1, meiotic recombina 100.0 1.2E-52 4.2E-57 390.7 28.4 318 25-342 23-343 (343)
3 2z43_A DNA repair and recombin 100.0 5.7E-51 1.9E-55 377.0 27.9 316 22-342 8-324 (324)
4 2i1q_A DNA repair and recombin 100.0 8.5E-49 2.9E-53 362.4 30.9 307 28-339 5-322 (322)
5 1pzn_A RAD51, DNA repair and r 100.0 6.8E-47 2.3E-51 352.3 33.4 312 23-339 32-349 (349)
6 1n0w_A DNA repair protein RAD5 100.0 2.9E-38 9.8E-43 279.6 26.7 241 102-342 3-243 (243)
7 4a74_A DNA repair and recombin 100.0 1.2E-33 4E-38 247.9 25.0 224 101-339 3-231 (231)
8 2cvh_A DNA repair and recombin 100.0 2.2E-32 7.6E-37 238.1 21.6 217 104-340 1-219 (220)
9 3hr8_A Protein RECA; alpha and 100.0 2.7E-31 9.3E-36 245.9 21.6 219 102-340 39-273 (356)
10 1u94_A RECA protein, recombina 100.0 3.5E-30 1.2E-34 239.4 22.0 220 100-339 39-274 (356)
11 3io5_A Recombination and repai 100.0 6.1E-30 2.1E-34 230.1 22.5 220 102-341 4-245 (333)
12 2zts_A Putative uncharacterize 100.0 1.5E-30 5.1E-35 230.8 16.8 216 100-339 7-244 (251)
13 1xp8_A RECA protein, recombina 100.0 8E-30 2.7E-34 237.7 21.4 220 100-339 50-286 (366)
14 2zr9_A Protein RECA, recombina 100.0 1.6E-29 5.4E-34 234.9 21.7 220 100-339 37-272 (349)
15 3cmu_A Protein RECA, recombina 100.0 2.1E-29 7.4E-34 271.3 20.3 264 53-339 655-943 (2050)
16 3bh0_A DNAB-like replicative h 100.0 6.5E-28 2.2E-32 221.5 23.5 211 101-331 47-297 (315)
17 4a1f_A DNAB helicase, replicat 100.0 2E-28 6.8E-33 225.2 16.4 214 100-331 24-306 (338)
18 2q6t_A DNAB replication FORK h 100.0 4E-27 1.4E-31 226.2 24.0 218 102-333 180-431 (444)
19 2dr3_A UPF0273 protein PH0284; 100.0 2.9E-27 9.8E-32 209.2 20.9 209 103-340 3-234 (247)
20 3bgw_A DNAB-like replicative h 100.0 3E-27 1E-31 226.3 22.4 215 101-333 176-428 (444)
21 2r6a_A DNAB helicase, replicat 99.9 3.8E-26 1.3E-30 220.0 23.1 213 102-332 183-431 (454)
22 1q57_A DNA primase/helicase; d 99.9 2.1E-26 7.2E-31 224.7 21.3 214 100-328 219-467 (503)
23 3cmw_A Protein RECA, recombina 99.9 2E-26 6.9E-31 246.3 22.7 220 100-339 359-594 (1706)
24 3cmw_A Protein RECA, recombina 99.9 4.2E-26 1.4E-30 243.8 22.6 219 101-339 709-943 (1706)
25 3cmu_A Protein RECA, recombina 99.9 3.3E-26 1.1E-30 246.8 21.8 219 101-339 360-594 (2050)
26 2w0m_A SSO2452; RECA, SSPF, un 99.9 1.8E-24 6.3E-29 189.3 20.6 208 103-339 3-229 (235)
27 1cr0_A DNA primase/helicase; R 99.9 8.5E-23 2.9E-27 185.9 21.0 227 100-341 12-276 (296)
28 2ehv_A Hypothetical protein PH 99.9 2.5E-22 8.5E-27 177.8 20.8 215 101-340 8-245 (251)
29 1nlf_A Regulatory protein REPA 99.9 5.5E-21 1.9E-25 172.5 16.6 222 103-339 11-261 (279)
30 1tf7_A KAIC; homohexamer, hexa 99.8 4E-20 1.4E-24 181.1 20.5 207 102-338 260-478 (525)
31 3bs4_A Uncharacterized protein 99.8 5.6E-18 1.9E-22 149.8 16.8 205 104-334 2-245 (260)
32 1tf7_A KAIC; homohexamer, hexa 99.7 1.9E-16 6.5E-21 155.0 21.6 211 102-338 18-245 (525)
33 1b22_A DNA repair protein RAD5 99.5 3.7E-15 1.3E-19 114.1 5.3 110 8-117 5-114 (114)
34 2vhj_A Ntpase P4, P4; non- hyd 99.5 1.1E-14 3.8E-19 131.7 8.0 130 104-273 105-236 (331)
35 3gfo_A Cobalt import ATP-bindi 99.3 1.8E-11 6.3E-16 109.4 9.9 146 109-274 21-205 (275)
36 3tui_C Methionine import ATP-b 99.2 2.6E-11 9.1E-16 112.1 10.3 146 109-274 41-225 (366)
37 4g1u_C Hemin import ATP-bindin 99.2 1.6E-11 5.4E-16 109.5 7.7 140 110-274 25-209 (266)
38 3tif_A Uncharacterized ABC tra 99.2 6.4E-11 2.2E-15 103.6 11.1 145 110-274 19-207 (235)
39 1g6h_A High-affinity branched- 99.2 1E-10 3.5E-15 103.7 9.7 141 111-274 22-214 (257)
40 3rlf_A Maltose/maltodextrin im 99.1 3E-11 1E-15 112.4 5.5 143 109-274 16-195 (381)
41 2olj_A Amino acid ABC transpor 99.1 9.1E-11 3.1E-15 104.3 8.3 144 110-274 38-220 (263)
42 2pcj_A ABC transporter, lipopr 99.1 6.6E-11 2.2E-15 102.8 7.1 143 111-274 19-201 (224)
43 3fvq_A Fe(3+) IONS import ATP- 99.1 3.6E-11 1.2E-15 111.1 4.6 146 109-274 17-200 (359)
44 1vpl_A ABC transporter, ATP-bi 99.1 2.9E-10 9.7E-15 100.7 8.9 141 110-274 29-207 (256)
45 2yyz_A Sugar ABC transporter, 99.1 6.7E-11 2.3E-15 109.5 4.7 144 111-274 18-195 (359)
46 1b0u_A Histidine permease; ABC 99.1 4.3E-10 1.5E-14 100.0 9.6 144 110-274 20-214 (262)
47 2it1_A 362AA long hypothetical 99.1 1.3E-10 4.6E-15 107.6 6.6 142 110-274 17-195 (362)
48 1v43_A Sugar-binding transport 99.1 1E-10 3.5E-15 108.8 5.6 144 111-274 26-203 (372)
49 3d31_A Sulfate/molybdate ABC t 99.1 7.7E-11 2.6E-15 108.7 4.6 144 111-274 15-189 (348)
50 1z47_A CYSA, putative ABC-tran 99.1 1.4E-10 4.7E-15 107.2 6.0 142 110-274 29-207 (355)
51 1oxx_K GLCV, glucose, ABC tran 99.0 5.6E-11 1.9E-15 110.0 3.3 47 216-274 156-202 (353)
52 2ihy_A ABC transporter, ATP-bi 99.0 3.1E-10 1E-14 101.8 7.4 144 110-274 35-224 (279)
53 2qi9_C Vitamin B12 import ATP- 99.0 2E-10 6.9E-15 101.3 6.0 140 110-274 14-194 (249)
54 1g29_1 MALK, maltose transport 99.0 1.3E-10 4.4E-15 108.2 5.1 47 216-274 155-201 (372)
55 2ff7_A Alpha-hemolysin translo 99.0 4.5E-10 1.5E-14 99.0 7.9 140 110-274 23-205 (247)
56 3nh6_A ATP-binding cassette SU 99.0 1.8E-10 6.2E-15 104.4 4.2 140 108-274 66-250 (306)
57 1ji0_A ABC transporter; ATP bi 99.0 4.5E-10 1.5E-14 98.6 6.5 140 111-274 21-200 (240)
58 2ixe_A Antigen peptide transpo 99.0 3.5E-10 1.2E-14 101.0 5.7 142 110-274 33-218 (271)
59 2yz2_A Putative ABC transporte 99.0 8.1E-09 2.8E-13 91.9 14.5 46 216-274 154-199 (266)
60 2nq2_C Hypothetical ABC transp 99.0 4.1E-09 1.4E-13 93.1 12.3 143 110-274 19-190 (253)
61 1mv5_A LMRA, multidrug resista 99.0 5E-10 1.7E-14 98.5 6.0 42 110-154 16-57 (243)
62 2onk_A Molybdate/tungstate ABC 99.0 1.8E-10 6.1E-15 101.1 2.9 47 216-274 142-188 (240)
63 1sgw_A Putative ABC transporte 99.0 3.5E-09 1.2E-13 91.1 10.7 147 110-275 23-195 (214)
64 2b8t_A Thymidine kinase; deoxy 98.9 1E-09 3.5E-14 94.8 4.1 143 121-308 10-152 (223)
65 3b5x_A Lipid A export ATP-bind 98.9 4.3E-09 1.5E-13 104.0 8.7 140 110-274 357-540 (582)
66 2d2e_A SUFC protein; ABC-ATPas 98.8 2.2E-08 7.6E-13 88.2 11.1 33 111-144 18-50 (250)
67 2ghi_A Transport protein; mult 98.8 3.1E-09 1.1E-13 94.3 5.3 33 111-144 35-67 (260)
68 4gp7_A Metallophosphoesterase; 98.8 1.2E-08 4E-13 84.6 8.4 58 216-274 99-160 (171)
69 3gd7_A Fusion complex of cysti 98.8 2.1E-09 7.1E-14 100.6 3.1 49 109-166 34-82 (390)
70 3b60_A Lipid A export ATP-bind 98.8 5E-09 1.7E-13 103.6 5.8 140 110-274 357-540 (582)
71 2yl4_A ATP-binding cassette SU 98.8 6.4E-09 2.2E-13 103.1 6.2 48 111-166 359-406 (595)
72 3ozx_A RNAse L inhibitor; ATP 98.8 5.9E-08 2E-12 94.7 12.7 138 120-274 291-447 (538)
73 2pjz_A Hypothetical protein ST 98.8 3.8E-09 1.3E-13 93.8 3.9 39 111-154 20-58 (263)
74 3bk7_A ABC transporter ATP-bin 98.7 1.3E-07 4.3E-12 93.6 15.1 138 120-274 379-533 (607)
75 3qf4_A ABC transporter, ATP-bi 98.7 8.4E-09 2.9E-13 102.0 6.6 140 110-274 357-539 (587)
76 2pze_A Cystic fibrosis transme 98.7 1.4E-09 4.8E-14 94.7 0.8 42 110-154 22-63 (229)
77 1yqt_A RNAse L inhibitor; ATP- 98.7 9.9E-08 3.4E-12 93.2 13.8 138 120-274 309-463 (538)
78 2cbz_A Multidrug resistance-as 98.7 1.4E-09 4.9E-14 95.1 0.6 42 110-154 19-60 (237)
79 3qf4_B Uncharacterized ABC tra 98.7 5.2E-09 1.8E-13 103.8 4.6 49 110-166 369-417 (598)
80 3j16_B RLI1P; ribosome recycli 98.7 1.6E-07 5.4E-12 92.8 15.0 138 118-274 373-529 (608)
81 2zu0_C Probable ATP-dependent 98.7 8.3E-09 2.8E-13 91.9 5.1 34 110-144 34-67 (267)
82 1yqt_A RNAse L inhibitor; ATP- 98.7 8.7E-08 3E-12 93.6 12.5 46 216-274 174-219 (538)
83 4a82_A Cystic fibrosis transme 98.7 1.4E-08 4.9E-13 100.2 5.2 49 110-166 355-403 (578)
84 3ec2_A DNA replication protein 98.6 8.9E-08 3.1E-12 79.7 8.4 43 119-166 34-76 (180)
85 3bk7_A ABC transporter ATP-bin 98.6 2.3E-07 8E-12 91.7 12.3 46 216-274 244-289 (607)
86 2kjq_A DNAA-related protein; s 98.6 2.8E-07 9.6E-12 74.5 10.6 40 122-167 35-74 (149)
87 4f4c_A Multidrug resistance pr 98.6 2.1E-08 7.3E-13 107.6 4.3 138 110-274 1093-1277(1321)
88 3j16_B RLI1P; ribosome recycli 98.5 4E-07 1.4E-11 90.0 11.4 46 216-274 237-282 (608)
89 2bbs_A Cystic fibrosis transme 98.5 2.5E-07 8.6E-12 83.1 9.1 53 111-166 53-107 (290)
90 3ozx_A RNAse L inhibitor; ATP 98.5 4.7E-07 1.6E-11 88.3 11.7 45 216-274 154-198 (538)
91 4f4c_A Multidrug resistance pr 98.5 9.3E-08 3.2E-12 102.7 6.6 138 110-274 432-614 (1321)
92 3g5u_A MCG1178, multidrug resi 98.5 1.5E-07 5E-12 100.9 6.6 49 110-166 404-452 (1284)
93 2iw3_A Elongation factor 3A; a 98.4 2E-06 6.7E-11 88.7 13.8 139 111-274 450-606 (986)
94 3g5u_A MCG1178, multidrug resi 98.4 1.4E-07 4.7E-12 101.1 4.7 48 111-166 1048-1095(1284)
95 4b4t_J 26S protease regulatory 98.4 2E-06 6.9E-11 80.2 11.0 120 119-274 178-298 (405)
96 1c9k_A COBU, adenosylcobinamid 98.3 4.8E-07 1.6E-11 75.2 5.5 88 125-233 1-88 (180)
97 1j8m_F SRP54, signal recogniti 98.3 6.5E-06 2.2E-10 74.2 13.4 109 107-230 75-192 (297)
98 2yhs_A FTSY, cell division pro 98.3 6.7E-06 2.3E-10 78.6 13.1 42 119-166 289-330 (503)
99 3b9q_A Chloroplast SRP recepto 98.3 5.2E-06 1.8E-10 75.0 11.5 42 119-166 96-137 (302)
100 2kz3_A Putative uncharacterize 98.3 1E-06 3.5E-11 63.0 5.4 65 34-98 10-74 (83)
101 3ux8_A Excinuclease ABC, A sub 98.3 2.3E-06 7.8E-11 85.9 10.0 44 218-274 564-607 (670)
102 2iw3_A Elongation factor 3A; a 98.3 3.4E-06 1.2E-10 87.0 11.2 39 112-153 689-727 (986)
103 3b85_A Phosphate starvation-in 98.3 1.3E-07 4.5E-12 80.8 0.6 33 119-154 18-50 (208)
104 2orw_A Thymidine kinase; TMTK, 98.3 1.5E-06 5.3E-11 72.7 7.1 111 122-274 2-114 (184)
105 3e70_C DPA, signal recognition 98.3 9.8E-06 3.3E-10 74.0 13.1 57 120-182 126-184 (328)
106 3ux8_A Excinuclease ABC, A sub 98.3 1.9E-06 6.6E-11 86.5 9.1 30 110-140 32-61 (670)
107 1rj9_A FTSY, signal recognitio 98.3 1.6E-05 5.4E-10 71.9 14.1 39 122-166 101-139 (304)
108 4b4t_K 26S protease regulatory 98.3 3.5E-06 1.2E-10 79.5 10.0 120 119-274 202-322 (428)
109 4b4t_L 26S protease subunit RP 98.3 5.1E-06 1.7E-10 78.6 11.1 123 119-277 211-334 (437)
110 4b4t_M 26S protease regulatory 98.2 3.3E-06 1.1E-10 79.7 9.7 123 119-277 211-334 (434)
111 3h4m_A Proteasome-activating n 98.2 6.7E-06 2.3E-10 73.3 10.5 120 119-274 47-167 (285)
112 4b4t_I 26S protease regulatory 98.2 5.7E-06 2E-10 77.5 10.3 124 118-277 211-335 (437)
113 1vma_A Cell division protein F 98.2 1.8E-05 6.2E-10 71.5 13.2 94 120-229 101-197 (306)
114 3jvv_A Twitching mobility prot 98.2 1.8E-06 6.2E-11 79.8 6.5 114 120-276 120-234 (356)
115 4b4t_H 26S protease regulatory 98.2 8.4E-06 2.9E-10 77.2 10.6 119 119-273 239-358 (467)
116 2pt7_A CAG-ALFA; ATPase, prote 98.2 4.8E-06 1.6E-10 76.2 8.8 110 119-274 167-276 (330)
117 2og2_A Putative signal recogni 98.2 2E-05 7E-10 72.7 12.9 42 119-166 153-194 (359)
118 3kl4_A SRP54, signal recogniti 98.1 3.1E-05 1E-09 73.2 13.8 93 122-230 96-191 (433)
119 3dm5_A SRP54, signal recogniti 98.1 4.9E-05 1.7E-09 71.9 14.8 93 122-230 99-194 (443)
120 2eyu_A Twitching motility prot 98.1 4.6E-06 1.6E-10 73.7 7.1 34 110-146 15-48 (261)
121 1fnn_A CDC6P, cell division co 98.1 4.1E-05 1.4E-09 71.0 13.7 120 125-273 46-169 (389)
122 4aby_A DNA repair protein RECN 98.1 7E-06 2.4E-10 77.4 8.3 35 108-144 47-81 (415)
123 1xwi_A SKD1 protein; VPS4B, AA 98.1 2.1E-05 7.2E-10 71.7 11.1 81 118-233 40-120 (322)
124 3thx_B DNA mismatch repair pro 98.1 4E-06 1.4E-10 86.3 6.8 28 119-146 669-696 (918)
125 2qby_A CDC6 homolog 1, cell di 98.1 5.2E-06 1.8E-10 76.9 6.8 129 121-273 43-173 (386)
126 2j9r_A Thymidine kinase; TK1, 98.0 1.3E-05 4.6E-10 68.1 8.2 138 121-307 26-163 (214)
127 1ls1_A Signal recognition part 98.0 8E-05 2.7E-09 67.0 13.6 40 122-167 97-136 (295)
128 3thx_A DNA mismatch repair pro 98.0 7.9E-06 2.7E-10 84.3 7.7 29 119-147 658-686 (934)
129 2obl_A ESCN; ATPase, hydrolase 98.0 3.4E-05 1.2E-09 71.0 10.9 61 98-167 48-108 (347)
130 3t15_A Ribulose bisphosphate c 98.0 2.5E-05 8.5E-10 70.2 9.5 82 119-232 32-113 (293)
131 3cf2_A TER ATPase, transitiona 98.0 2E-05 6.7E-10 80.0 9.6 121 119-277 234-354 (806)
132 2ce7_A Cell division protein F 98.0 4.2E-05 1.4E-09 73.3 11.4 121 119-277 47-168 (476)
133 4a8j_A Elongator complex prote 98.0 3.1E-05 1.1E-09 70.7 9.8 102 204-322 201-323 (361)
134 3eie_A Vacuolar protein sortin 98.0 2.4E-05 8.4E-10 71.2 9.3 78 119-232 47-124 (322)
135 1w4r_A Thymidine kinase; type 97.9 2.6E-05 9E-10 65.3 8.4 135 121-307 18-152 (195)
136 3pih_A Uvrabc system protein A 97.9 4E-05 1.4E-09 78.8 11.4 44 218-274 826-869 (916)
137 3cf0_A Transitional endoplasmi 97.9 2.8E-05 9.6E-10 70.1 9.1 120 119-276 45-167 (301)
138 3bos_A Putative DNA replicatio 97.9 1.5E-05 5.2E-10 68.7 7.0 48 112-167 43-90 (242)
139 2qp9_X Vacuolar protein sortin 97.9 6.2E-05 2.1E-09 69.5 11.5 30 118-147 79-108 (355)
140 1e69_A Chromosome segregation 97.9 4.2E-05 1.4E-09 69.7 10.1 43 217-273 240-282 (322)
141 1xx6_A Thymidine kinase; NESG, 97.9 9.3E-06 3.2E-10 68.3 5.2 113 121-273 6-118 (191)
142 2r6f_A Excinuclease ABC subuni 97.9 2.3E-05 7.9E-10 80.4 8.9 44 218-274 866-909 (972)
143 2vf7_A UVRA2, excinuclease ABC 97.9 1.1E-05 3.8E-10 82.2 6.3 44 218-274 751-794 (842)
144 2qz4_A Paraplegin; AAA+, SPG7, 97.9 4.5E-05 1.5E-09 66.8 9.5 40 119-167 35-74 (262)
145 2ygr_A Uvrabc system protein A 97.9 5.2E-05 1.8E-09 78.0 11.1 44 218-274 884-927 (993)
146 2v1u_A Cell division control p 97.9 1.6E-05 5.6E-10 73.6 6.8 100 121-231 42-143 (387)
147 2r8r_A Sensor protein; KDPD, P 97.9 0.00013 4.3E-09 62.7 11.5 41 122-168 4-45 (228)
148 1zu4_A FTSY; GTPase, signal re 97.9 0.0001 3.5E-09 67.0 11.7 42 120-167 102-143 (320)
149 1lw7_A Transcriptional regulat 97.9 1.2E-05 4E-10 74.7 5.4 149 118-273 163-329 (365)
150 3b9p_A CG5977-PA, isoform A; A 97.9 0.0001 3.6E-09 65.9 11.3 76 122-233 53-128 (297)
151 2ffh_A Protein (FFH); SRP54, s 97.8 0.00026 8.9E-09 66.7 14.1 40 122-167 97-136 (425)
152 2p65_A Hypothetical protein PF 97.8 8.1E-05 2.8E-09 61.2 9.2 118 123-273 43-162 (187)
153 2px0_A Flagellar biosynthesis 97.8 5.7E-05 2E-09 67.9 8.8 42 121-167 103-144 (296)
154 1ye8_A Protein THEP1, hypothet 97.8 3.4E-05 1.2E-09 64.0 6.7 23 125-147 2-24 (178)
155 1g5t_A COB(I)alamin adenosyltr 97.8 4.6E-05 1.6E-09 63.9 7.4 128 124-271 29-161 (196)
156 2orv_A Thymidine kinase; TP4A 97.8 0.00029 1E-08 60.4 12.5 110 122-274 18-127 (234)
157 2o8b_B DNA mismatch repair pro 97.8 2.2E-05 7.6E-10 81.9 6.5 48 216-274 866-913 (1022)
158 3e2i_A Thymidine kinase; Zn-bi 97.8 4.2E-05 1.4E-09 65.0 6.6 145 115-308 20-164 (219)
159 3hu3_A Transitional endoplasmi 97.8 9.9E-05 3.4E-09 71.1 10.0 118 119-274 234-351 (489)
160 2npi_A Protein CLP1; CLP1-PCF1 97.8 2.7E-05 9.2E-10 74.4 5.9 27 119-145 134-160 (460)
161 1ypw_A Transitional endoplasmi 97.7 8.3E-05 2.8E-09 76.0 9.7 120 119-276 234-353 (806)
162 1lv7_A FTSH; alpha/beta domain 97.7 7E-05 2.4E-09 65.6 8.0 32 126-166 48-79 (257)
163 2ewv_A Twitching motility prot 97.7 3.5E-05 1.2E-09 71.7 6.3 27 120-146 133-159 (372)
164 2j37_W Signal recognition part 97.7 0.00035 1.2E-08 67.3 13.1 39 123-167 101-139 (504)
165 1jbk_A CLPB protein; beta barr 97.7 5.7E-05 1.9E-09 62.3 6.5 25 123-147 43-67 (195)
166 1wb9_A DNA mismatch repair pro 97.7 0.00013 4.5E-09 74.2 10.1 27 121-147 605-631 (800)
167 3ice_A Transcription terminati 97.7 0.00018 6E-09 66.5 9.9 114 103-232 156-275 (422)
168 1l8q_A Chromosomal replication 97.7 0.00013 4.3E-09 66.3 9.1 39 122-166 36-74 (324)
169 3d8b_A Fidgetin-like protein 1 97.7 0.0002 6.8E-09 66.1 10.4 76 121-232 115-190 (357)
170 1sky_E F1-ATPase, F1-ATP synth 97.7 0.00044 1.5E-08 65.6 12.9 49 99-149 129-177 (473)
171 3vfd_A Spastin; ATPase, microt 97.7 0.00029 9.8E-09 65.8 11.4 113 122-272 147-261 (389)
172 3uk6_A RUVB-like 2; hexameric 97.6 0.00062 2.1E-08 62.7 13.0 32 117-148 64-95 (368)
173 2x8a_A Nuclear valosin-contain 97.6 0.00026 9E-09 62.8 9.9 37 119-166 42-78 (274)
174 3qf7_A RAD50; ABC-ATPase, ATPa 97.6 0.00063 2.2E-08 63.0 12.8 45 217-274 302-346 (365)
175 2qen_A Walker-type ATPase; unk 97.6 0.00017 6E-09 65.6 8.3 33 123-166 31-63 (350)
176 2ius_A DNA translocase FTSK; n 97.6 8.5E-05 2.9E-09 71.6 6.2 46 120-167 164-209 (512)
177 2dpy_A FLII, flagellum-specifi 97.5 0.0001 3.5E-09 70.0 6.3 62 97-167 133-194 (438)
178 1ewq_A DNA mismatch repair pro 97.5 0.00031 1E-08 71.1 10.1 25 123-147 576-600 (765)
179 2z4s_A Chromosomal replication 97.5 0.0002 6.7E-09 68.1 8.2 107 123-272 130-236 (440)
180 2zan_A Vacuolar protein sortin 97.5 9.4E-05 3.2E-09 70.4 5.9 41 118-166 162-202 (444)
181 1zp6_A Hypothetical protein AT 97.5 4.8E-05 1.6E-09 63.4 3.3 39 119-166 5-43 (191)
182 1wcn_A Transcription elongatio 97.5 0.0002 6.7E-09 49.5 5.7 50 34-83 13-62 (70)
183 2xxa_A Signal recognition part 97.5 0.00043 1.5E-08 65.5 10.0 39 123-167 100-139 (433)
184 2qby_B CDC6 homolog 3, cell di 97.5 0.00024 8.1E-09 65.8 7.9 98 123-232 45-147 (384)
185 1ixz_A ATP-dependent metallopr 97.5 0.00033 1.1E-08 61.2 8.4 26 119-146 47-72 (254)
186 2chg_A Replication factor C sm 97.5 0.00087 3E-08 56.4 10.8 22 126-147 41-62 (226)
187 1sxj_E Activator 1 40 kDa subu 97.5 0.00024 8E-09 65.2 7.7 23 126-148 39-61 (354)
188 1w5s_A Origin recognition comp 97.5 0.00058 2E-08 63.7 10.5 99 122-231 49-151 (412)
189 1u9l_A Transcription elongatio 97.5 0.0002 6.9E-09 49.4 5.3 54 31-84 9-62 (70)
190 1sxj_A Activator 1 95 kDa subu 97.4 0.00038 1.3E-08 67.5 9.1 113 121-272 75-188 (516)
191 1z6g_A Guanylate kinase; struc 97.4 6.5E-05 2.2E-09 64.4 3.0 35 111-146 12-46 (218)
192 2ck3_D ATP synthase subunit be 97.4 0.0016 5.4E-08 61.8 12.6 47 101-149 133-179 (482)
193 2v9p_A Replication protein E1; 97.4 0.0001 3.4E-09 66.5 4.3 37 110-147 114-150 (305)
194 1znw_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 63.2 3.4 28 119-146 16-43 (207)
195 1fx0_B ATP synthase beta chain 97.4 0.0021 7.3E-08 61.2 13.4 47 101-149 145-191 (498)
196 3oaa_A ATP synthase subunit al 97.4 0.0016 5.6E-08 61.9 12.4 121 99-231 140-267 (513)
197 1njg_A DNA polymerase III subu 97.4 0.0015 5.2E-08 55.5 11.4 25 124-148 46-70 (250)
198 3syl_A Protein CBBX; photosynt 97.4 0.0012 4.2E-08 59.1 11.2 43 122-166 66-108 (309)
199 3cf2_A TER ATPase, transitiona 97.4 0.00016 5.4E-09 73.4 5.6 117 118-270 506-623 (806)
200 3llm_A ATP-dependent RNA helic 97.4 0.00054 1.9E-08 59.1 8.4 47 119-166 72-118 (235)
201 1htw_A HI0065; nucleotide-bind 97.4 0.00014 4.6E-09 59.1 4.1 34 112-146 23-56 (158)
202 2v3c_C SRP54, signal recogniti 97.3 0.00014 4.6E-09 69.0 4.6 38 124-167 100-137 (432)
203 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00042 1.4E-08 66.7 7.9 37 119-166 62-98 (499)
204 3tr0_A Guanylate kinase, GMP k 97.3 0.00011 3.7E-09 61.8 3.5 27 120-146 4-30 (205)
205 1fx0_A ATP synthase alpha chai 97.3 0.0015 5E-08 62.4 11.1 119 100-230 142-267 (507)
206 1kgd_A CASK, peripheral plasma 97.3 0.00013 4.5E-09 60.4 3.5 27 120-146 2-28 (180)
207 3uie_A Adenylyl-sulfate kinase 97.3 0.00016 5.4E-09 60.9 4.0 50 110-166 13-62 (200)
208 2r9v_A ATP synthase subunit al 97.3 0.0013 4.3E-08 62.8 10.5 122 98-231 152-280 (515)
209 1d2n_A N-ethylmaleimide-sensit 97.3 0.0016 5.5E-08 57.4 10.6 27 120-146 61-87 (272)
210 2jeo_A Uridine-cytidine kinase 97.3 0.00013 4.6E-09 63.5 3.4 37 109-146 12-48 (245)
211 3te6_A Regulatory protein SIR3 97.3 0.0016 5.5E-08 58.9 10.6 108 112-231 36-145 (318)
212 4fcw_A Chaperone protein CLPB; 97.3 0.00058 2E-08 61.3 7.7 40 122-167 46-85 (311)
213 3vr4_A V-type sodium ATPase ca 97.2 0.0048 1.6E-07 59.6 14.0 71 100-182 211-281 (600)
214 2qe7_A ATP synthase subunit al 97.2 0.001 3.5E-08 63.4 9.3 121 99-231 140-267 (502)
215 2j41_A Guanylate kinase; GMP, 97.2 0.00016 5.6E-09 60.8 3.5 26 120-145 3-28 (207)
216 1iy2_A ATP-dependent metallopr 97.2 0.00075 2.6E-08 59.8 8.0 26 119-146 71-96 (278)
217 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.002 7E-08 56.5 10.6 25 122-146 3-27 (260)
218 1s96_A Guanylate kinase, GMP k 97.2 0.00017 5.7E-09 61.9 3.3 27 119-145 12-38 (219)
219 2fna_A Conserved hypothetical 97.2 0.002 6.8E-08 58.5 10.9 35 124-167 31-65 (357)
220 3c8u_A Fructokinase; YP_612366 97.2 0.00017 5.8E-09 61.1 3.3 27 120-146 19-45 (208)
221 3u61_B DNA polymerase accessor 97.2 0.0029 1E-07 57.1 11.7 35 124-167 49-83 (324)
222 3n70_A Transport activator; si 97.2 0.0007 2.4E-08 53.8 6.5 37 123-166 24-60 (145)
223 2c61_A A-type ATP synthase non 97.2 0.0019 6.5E-08 61.2 10.3 123 101-231 132-262 (469)
224 3pfi_A Holliday junction ATP-d 97.2 0.0029 9.8E-08 57.5 11.3 22 125-146 57-78 (338)
225 2pez_A Bifunctional 3'-phospho 97.2 0.00035 1.2E-08 57.5 4.6 39 121-165 3-41 (179)
226 3pvs_A Replication-associated 97.1 0.0019 6.4E-08 61.4 10.2 24 124-147 51-74 (447)
227 2yvu_A Probable adenylyl-sulfa 97.1 0.00029 1E-08 58.4 4.0 47 112-166 4-50 (186)
228 1rz3_A Hypothetical protein rb 97.1 0.00054 1.8E-08 57.7 5.7 41 120-166 19-59 (201)
229 1ypw_A Transitional endoplasmi 97.1 0.00012 4.1E-09 74.9 1.6 123 119-277 507-630 (806)
230 3vaa_A Shikimate kinase, SK; s 97.1 0.00025 8.7E-09 59.6 3.3 34 112-146 15-48 (199)
231 2ck3_A ATP synthase subunit al 97.1 0.0029 9.8E-08 60.4 10.9 126 100-231 141-275 (510)
232 1lvg_A Guanylate kinase, GMP k 97.1 0.00021 7.2E-09 60.2 2.8 27 120-146 1-27 (198)
233 3mfy_A V-type ATP synthase alp 97.1 0.0029 9.9E-08 60.9 10.8 120 100-232 206-338 (588)
234 3vr4_D V-type sodium ATPase su 97.1 0.0056 1.9E-07 57.7 12.4 47 100-148 130-176 (465)
235 3lnc_A Guanylate kinase, GMP k 97.1 0.00019 6.5E-09 61.8 2.3 26 119-144 23-48 (231)
236 4eun_A Thermoresistant glucoki 97.1 0.00029 1E-08 59.2 3.3 37 120-167 26-62 (200)
237 1ofh_A ATP-dependent HSL prote 97.0 0.0015 5.2E-08 58.3 8.2 34 124-166 51-84 (310)
238 3tau_A Guanylate kinase, GMP k 97.0 0.00033 1.1E-08 59.4 3.5 26 121-146 6-31 (208)
239 2rhm_A Putative kinase; P-loop 97.0 0.00035 1.2E-08 58.0 3.6 28 119-146 1-28 (193)
240 3zq6_A Putative arsenical pump 97.0 0.0033 1.1E-07 57.1 10.0 38 124-167 15-52 (324)
241 3asz_A Uridine kinase; cytidin 97.0 0.00034 1.2E-08 59.1 3.2 25 121-145 4-28 (211)
242 1tue_A Replication protein E1; 97.0 0.00034 1.2E-08 59.0 3.0 37 109-146 45-81 (212)
243 1hqc_A RUVB; extended AAA-ATPa 97.0 0.0042 1.4E-07 55.9 10.3 35 123-166 38-72 (324)
244 1sxj_B Activator 1 37 kDa subu 96.9 0.0019 6.4E-08 58.0 7.7 22 126-147 45-66 (323)
245 1sq5_A Pantothenate kinase; P- 96.9 0.00082 2.8E-08 60.7 5.3 44 120-167 77-120 (308)
246 1svm_A Large T antigen; AAA+ f 96.9 0.00057 1.9E-08 63.4 4.3 34 111-145 158-191 (377)
247 3aez_A Pantothenate kinase; tr 96.9 0.00044 1.5E-08 62.6 3.5 46 120-169 87-132 (312)
248 2iut_A DNA translocase FTSK; n 96.9 0.0032 1.1E-07 61.2 9.6 44 122-167 213-256 (574)
249 3gqb_A V-type ATP synthase alp 96.9 0.0047 1.6E-07 59.4 10.5 45 100-146 200-244 (578)
250 1knq_A Gluconate kinase; ALFA/ 96.9 0.00051 1.7E-08 56.2 3.4 36 121-167 6-41 (175)
251 3l0o_A Transcription terminati 96.9 0.0018 6.2E-08 59.8 7.2 45 103-149 157-201 (427)
252 2a5y_B CED-4; apoptosis; HET: 96.9 0.0061 2.1E-07 59.4 11.5 99 122-229 151-254 (549)
253 2qt1_A Nicotinamide riboside k 96.9 0.00059 2E-08 57.6 3.4 39 119-167 17-55 (207)
254 1kag_A SKI, shikimate kinase I 96.8 0.00053 1.8E-08 55.9 3.0 24 122-145 3-26 (173)
255 2bdt_A BH3686; alpha-beta prot 96.8 0.00048 1.7E-08 57.2 2.8 23 123-145 2-24 (189)
256 2p67_A LAO/AO transport system 96.8 0.0056 1.9E-07 55.9 10.1 43 119-167 52-94 (341)
257 2gza_A Type IV secretion syste 96.8 0.00079 2.7E-08 62.2 4.2 40 119-165 171-210 (361)
258 3a00_A Guanylate kinase, GMP k 96.8 0.00056 1.9E-08 56.8 2.9 24 123-146 1-24 (186)
259 3gqb_B V-type ATP synthase bet 96.8 0.0044 1.5E-07 58.4 9.1 49 98-148 124-172 (464)
260 2qm8_A GTPase/ATPase; G protei 96.8 0.0012 4.3E-08 60.3 5.4 49 111-166 44-92 (337)
261 3tqc_A Pantothenate kinase; bi 96.8 0.0031 1.1E-07 57.1 7.9 39 125-167 94-132 (321)
262 3p32_A Probable GTPase RV1496/ 96.8 0.0051 1.7E-07 56.6 9.5 40 122-167 78-117 (355)
263 2qor_A Guanylate kinase; phosp 96.8 0.00067 2.3E-08 57.2 3.2 29 119-147 8-36 (204)
264 3co5_A Putative two-component 96.8 0.0014 4.7E-08 52.0 4.8 21 124-144 28-48 (143)
265 3kjh_A CO dehydrogenase/acetyl 96.8 0.005 1.7E-07 53.0 8.8 37 126-168 3-39 (254)
266 3cio_A ETK, tyrosine-protein k 96.7 0.006 2.1E-07 54.7 9.4 41 122-168 103-144 (299)
267 2w58_A DNAI, primosome compone 96.7 0.0014 5E-08 54.8 5.0 37 124-166 55-91 (202)
268 3iqw_A Tail-anchored protein t 96.7 0.0077 2.6E-07 54.9 10.0 50 110-167 5-54 (334)
269 1qvr_A CLPB protein; coiled co 96.7 0.0054 1.9E-07 63.1 9.5 115 124-272 192-308 (854)
270 3cm0_A Adenylate kinase; ATP-b 96.7 0.00082 2.8E-08 55.4 2.8 26 121-146 2-27 (186)
271 1qhx_A CPT, protein (chloramph 96.6 0.0011 3.6E-08 54.3 3.4 24 123-146 3-26 (178)
272 1gvn_B Zeta; postsegregational 96.6 0.0014 4.9E-08 58.4 4.4 36 121-165 31-66 (287)
273 1p9r_A General secretion pathw 96.6 0.0019 6.5E-08 60.8 5.4 39 121-165 165-203 (418)
274 3ug7_A Arsenical pump-driving 96.6 0.0072 2.5E-07 55.4 9.2 43 119-167 22-64 (349)
275 3ney_A 55 kDa erythrocyte memb 96.6 0.0011 3.8E-08 55.7 3.4 25 122-146 18-42 (197)
276 2bbw_A Adenylate kinase 4, AK4 96.6 0.0011 3.9E-08 57.4 3.4 25 122-146 26-50 (246)
277 1iqp_A RFCS; clamp loader, ext 96.6 0.012 4E-07 52.8 10.3 22 126-147 49-70 (327)
278 3pxi_A Negative regulator of g 96.5 0.004 1.4E-07 63.2 7.5 36 125-166 523-558 (758)
279 4e22_A Cytidylate kinase; P-lo 96.5 0.0014 4.8E-08 57.3 3.5 26 121-146 25-50 (252)
280 1hyq_A MIND, cell division inh 96.5 0.015 5.2E-07 50.6 10.3 37 125-167 5-41 (263)
281 1kht_A Adenylate kinase; phosp 96.5 0.0014 4.6E-08 54.2 3.2 24 123-146 3-26 (192)
282 2p5t_B PEZT; postsegregational 96.5 0.0017 5.8E-08 56.7 4.0 38 120-166 29-66 (253)
283 2i3b_A HCR-ntpase, human cance 96.5 0.0012 4.1E-08 55.1 2.9 25 123-147 1-25 (189)
284 3sr0_A Adenylate kinase; phosp 96.5 0.0075 2.6E-07 51.0 7.9 31 125-166 2-32 (206)
285 3kta_A Chromosome segregation 96.5 0.0014 4.7E-08 53.9 3.2 26 119-145 23-48 (182)
286 1ly1_A Polynucleotide kinase; 96.5 0.0013 4.6E-08 53.6 3.1 22 124-145 3-24 (181)
287 1y63_A LMAJ004144AAA protein; 96.5 0.0017 5.8E-08 53.7 3.7 27 120-146 7-33 (184)
288 2qag_B Septin-6, protein NEDD5 96.5 0.0016 5.6E-08 61.2 3.9 33 112-145 30-64 (427)
289 2xau_A PRE-mRNA-splicing facto 96.5 0.0066 2.3E-07 61.7 8.6 43 120-165 106-148 (773)
290 1a5t_A Delta prime, HOLB; zinc 96.5 0.018 6E-07 52.4 10.7 74 124-197 25-116 (334)
291 3kb2_A SPBC2 prophage-derived 96.5 0.0014 4.9E-08 53.1 3.1 22 125-146 3-24 (173)
292 1nks_A Adenylate kinase; therm 96.5 0.0025 8.7E-08 52.5 4.7 35 125-165 3-37 (194)
293 4dzz_A Plasmid partitioning pr 96.5 0.0092 3.1E-07 49.7 8.1 83 126-230 4-87 (206)
294 1m7g_A Adenylylsulfate kinase; 96.4 0.0018 6.3E-08 54.7 3.5 42 119-165 21-62 (211)
295 3nwj_A ATSK2; P loop, shikimat 96.4 0.0016 5.4E-08 56.9 3.1 38 108-146 31-71 (250)
296 2ph1_A Nucleotide-binding prot 96.4 0.01 3.5E-07 51.8 8.4 39 125-169 21-59 (262)
297 1qvr_A CLPB protein; coiled co 96.4 0.0085 2.9E-07 61.7 8.9 38 124-167 589-626 (854)
298 1oft_A SULA, hypothetical prot 96.4 0.082 2.8E-06 42.4 12.7 135 102-269 22-158 (161)
299 2axn_A 6-phosphofructo-2-kinas 96.4 0.043 1.5E-06 53.0 13.3 39 122-166 34-72 (520)
300 2vp4_A Deoxynucleoside kinase; 96.3 0.0013 4.5E-08 56.5 2.2 26 119-144 16-41 (230)
301 3lw7_A Adenylate kinase relate 96.3 0.0017 5.9E-08 52.5 2.9 19 125-143 3-21 (179)
302 2qgz_A Helicase loader, putati 96.3 0.0033 1.1E-07 56.7 4.8 38 123-166 152-190 (308)
303 2plr_A DTMP kinase, probable t 96.3 0.0021 7.1E-08 54.0 3.2 26 122-147 3-28 (213)
304 2c95_A Adenylate kinase 1; tra 96.3 0.002 6.8E-08 53.5 3.0 25 122-146 8-32 (196)
305 1z6t_A APAF-1, apoptotic prote 96.3 0.0082 2.8E-07 58.9 7.9 53 112-167 136-189 (591)
306 2wwf_A Thymidilate kinase, put 96.3 0.0025 8.5E-08 53.6 3.6 29 119-147 6-34 (212)
307 2v54_A DTMP kinase, thymidylat 96.3 0.0025 8.4E-08 53.3 3.6 25 122-146 3-27 (204)
308 3t61_A Gluconokinase; PSI-biol 96.3 0.0021 7.2E-08 53.8 3.2 24 123-146 18-41 (202)
309 3iij_A Coilin-interacting nucl 96.3 0.0023 7.8E-08 52.5 3.3 27 120-146 8-34 (180)
310 3trf_A Shikimate kinase, SK; a 96.3 0.0024 8E-08 52.6 3.3 24 123-146 5-28 (185)
311 1tev_A UMP-CMP kinase; ploop, 96.3 0.0022 7.6E-08 53.0 3.1 24 123-146 3-26 (196)
312 2oap_1 GSPE-2, type II secreti 96.3 0.0028 9.5E-08 61.3 4.2 40 120-166 257-296 (511)
313 1cke_A CK, MSSA, protein (cyti 96.2 0.0026 8.9E-08 54.2 3.5 24 123-146 5-28 (227)
314 1um8_A ATP-dependent CLP prote 96.2 0.0071 2.4E-07 55.9 6.7 37 121-166 70-106 (376)
315 1nn5_A Similar to deoxythymidy 96.2 0.0027 9.2E-08 53.5 3.4 27 121-147 7-33 (215)
316 2bwj_A Adenylate kinase 5; pho 96.2 0.0018 6.1E-08 53.9 2.1 26 121-146 10-35 (199)
317 2ze6_A Isopentenyl transferase 96.2 0.0025 8.5E-08 55.7 3.1 22 125-146 3-24 (253)
318 2vli_A Antibiotic resistance p 96.2 0.0022 7.6E-08 52.6 2.6 25 122-146 4-28 (183)
319 3umf_A Adenylate kinase; rossm 96.1 0.0031 1.1E-07 53.8 3.5 37 119-166 25-61 (217)
320 1zd8_A GTP:AMP phosphotransfer 96.1 0.0028 9.4E-08 54.2 3.2 28 119-146 3-30 (227)
321 3igf_A ALL4481 protein; two-do 96.1 0.0077 2.6E-07 55.7 6.3 36 124-165 3-38 (374)
322 1aky_A Adenylate kinase; ATP:A 96.1 0.003 1E-07 53.7 3.4 25 122-146 3-27 (220)
323 2cdn_A Adenylate kinase; phosp 96.1 0.0033 1.1E-07 52.6 3.5 26 121-146 18-43 (201)
324 1vt4_I APAF-1 related killer D 96.1 0.015 5E-07 60.5 8.6 49 122-173 149-197 (1221)
325 3szr_A Interferon-induced GTP- 96.1 0.0072 2.5E-07 59.7 6.2 19 126-144 48-66 (608)
326 1odf_A YGR205W, hypothetical 3 96.1 0.0033 1.1E-07 56.1 3.4 28 120-147 28-55 (290)
327 1np6_A Molybdopterin-guanine d 96.1 0.0061 2.1E-07 50.1 4.7 27 120-146 3-29 (174)
328 1in4_A RUVB, holliday junction 96.0 0.013 4.4E-07 53.3 7.3 24 124-147 52-75 (334)
329 1jjv_A Dephospho-COA kinase; P 96.0 0.0032 1.1E-07 52.8 3.1 20 125-144 4-23 (206)
330 4eaq_A DTMP kinase, thymidylat 96.0 0.0036 1.2E-07 53.8 3.4 28 119-146 22-49 (229)
331 2yv5_A YJEQ protein; hydrolase 96.0 0.0039 1.3E-07 56.0 3.6 31 112-144 156-186 (302)
332 1uj2_A Uridine-cytidine kinase 96.0 0.0057 1.9E-07 53.2 4.6 43 124-167 23-65 (252)
333 1xjc_A MOBB protein homolog; s 96.0 0.0069 2.4E-07 49.5 4.7 37 124-166 5-41 (169)
334 2va8_A SSO2462, SKI2-type heli 96.0 0.011 3.7E-07 59.5 7.2 41 122-167 45-85 (715)
335 3end_A Light-independent proto 96.0 0.0059 2E-07 54.7 4.7 41 121-167 39-79 (307)
336 2if2_A Dephospho-COA kinase; a 95.9 0.0037 1.3E-07 52.3 3.0 21 125-145 3-23 (204)
337 2iyv_A Shikimate kinase, SK; t 95.9 0.0036 1.2E-07 51.5 2.8 23 124-146 3-25 (184)
338 3cr8_A Sulfate adenylyltranfer 95.9 0.0034 1.2E-07 61.1 3.0 43 119-166 365-407 (552)
339 1tq4_A IIGP1, interferon-induc 95.9 0.0033 1.1E-07 58.9 2.8 28 125-154 71-98 (413)
340 3euj_A Chromosome partition pr 95.9 0.0042 1.4E-07 59.4 3.5 35 109-145 17-51 (483)
341 2gno_A DNA polymerase III, gam 95.9 0.03 1E-06 50.2 9.0 72 123-197 18-90 (305)
342 2gxq_A Heat resistant RNA depe 95.9 0.059 2E-06 44.7 10.4 42 125-166 40-81 (207)
343 1via_A Shikimate kinase; struc 95.9 0.0037 1.3E-07 51.0 2.7 22 125-146 6-27 (175)
344 1jr3_A DNA polymerase III subu 95.9 0.023 8E-07 51.9 8.4 25 124-148 39-63 (373)
345 1r6b_X CLPA protein; AAA+, N-t 95.9 0.023 7.8E-07 57.6 9.0 26 122-147 206-231 (758)
346 1z3e_B DNA-directed RNA polyme 95.9 0.024 8E-07 39.2 6.2 52 31-82 11-62 (73)
347 2rcn_A Probable GTPase ENGC; Y 95.8 0.0053 1.8E-07 56.4 3.8 32 108-144 205-236 (358)
348 1u0j_A DNA replication protein 95.8 0.0072 2.5E-07 53.0 4.5 35 112-146 93-127 (267)
349 2jaq_A Deoxyguanosine kinase; 95.8 0.0045 1.5E-07 51.5 3.0 22 125-146 2-23 (205)
350 3gfk_B DNA-directed RNA polyme 95.8 0.0097 3.3E-07 41.7 4.2 59 24-82 11-69 (79)
351 1ukz_A Uridylate kinase; trans 95.8 0.0051 1.7E-07 51.4 3.3 24 123-146 15-38 (203)
352 1zak_A Adenylate kinase; ATP:A 95.8 0.0046 1.6E-07 52.6 3.1 25 122-146 4-28 (222)
353 4ag6_A VIRB4 ATPase, type IV s 95.8 0.01 3.6E-07 55.1 5.7 41 120-166 32-72 (392)
354 3a8t_A Adenylate isopentenyltr 95.8 0.0097 3.3E-07 54.1 5.3 26 121-146 38-63 (339)
355 1qf9_A UMP/CMP kinase, protein 95.8 0.0048 1.7E-07 50.8 3.0 24 123-146 6-29 (194)
356 1u0l_A Probable GTPase ENGC; p 95.8 0.005 1.7E-07 55.3 3.2 31 112-144 160-190 (301)
357 3k4g_A DNA-directed RNA polyme 95.8 0.023 8E-07 40.4 6.0 55 28-82 11-65 (86)
358 1yrb_A ATP(GTP)binding protein 95.8 0.012 4E-07 51.2 5.6 40 121-167 12-51 (262)
359 3tlx_A Adenylate kinase 2; str 95.8 0.0055 1.9E-07 53.1 3.4 25 122-146 28-52 (243)
360 3sqw_A ATP-dependent RNA helic 95.7 0.24 8.3E-06 48.3 15.5 32 20-51 11-43 (579)
361 2qmh_A HPR kinase/phosphorylas 95.7 0.0055 1.9E-07 51.3 3.1 26 122-147 33-58 (205)
362 1zuh_A Shikimate kinase; alpha 95.7 0.0055 1.9E-07 49.5 3.1 24 123-146 7-30 (168)
363 1r6b_X CLPA protein; AAA+, N-t 95.7 0.035 1.2E-06 56.2 9.8 34 124-166 489-522 (758)
364 2pbr_A DTMP kinase, thymidylat 95.7 0.0053 1.8E-07 50.6 3.1 23 125-147 2-24 (195)
365 3fb4_A Adenylate kinase; psych 95.7 0.0054 1.8E-07 51.8 3.1 22 125-146 2-23 (216)
366 2z0h_A DTMP kinase, thymidylat 95.7 0.0055 1.9E-07 50.8 3.1 23 125-147 2-24 (197)
367 1e6c_A Shikimate kinase; phosp 95.7 0.0049 1.7E-07 49.9 2.7 23 124-146 3-25 (173)
368 3b6e_A Interferon-induced heli 95.7 0.02 6.9E-07 47.8 6.6 43 124-166 49-91 (216)
369 2bjv_A PSP operon transcriptio 95.7 0.01 3.5E-07 51.8 4.9 38 124-167 30-67 (265)
370 3be4_A Adenylate kinase; malar 95.7 0.0061 2.1E-07 51.7 3.3 25 122-146 4-28 (217)
371 1t9h_A YLOQ, probable GTPase E 95.7 0.0018 6.3E-08 58.2 -0.0 25 120-144 170-194 (307)
372 2r2a_A Uncharacterized protein 95.7 0.012 4E-07 49.5 4.9 24 124-147 6-29 (199)
373 1sxj_C Activator 1 40 kDa subu 95.6 0.0049 1.7E-07 56.2 2.6 22 126-147 49-70 (340)
374 3dl0_A Adenylate kinase; phosp 95.6 0.0068 2.3E-07 51.2 3.4 22 125-146 2-23 (216)
375 1vht_A Dephospho-COA kinase; s 95.6 0.0066 2.3E-07 51.4 3.3 24 122-145 3-26 (218)
376 1a7j_A Phosphoribulokinase; tr 95.6 0.0061 2.1E-07 54.4 3.2 39 123-167 5-43 (290)
377 2zj8_A DNA helicase, putative 95.6 0.014 4.6E-07 58.9 6.0 45 122-171 38-82 (720)
378 1pui_A ENGB, probable GTP-bind 95.6 0.0034 1.2E-07 52.5 1.3 32 110-144 16-47 (210)
379 1uf9_A TT1252 protein; P-loop, 95.5 0.0072 2.5E-07 50.3 3.2 23 123-145 8-30 (203)
380 2r62_A Cell division protease 95.5 0.0048 1.7E-07 54.0 2.2 22 126-147 47-68 (268)
381 2c9o_A RUVB-like 1; hexameric 95.5 0.017 5.8E-07 54.9 6.2 29 119-147 59-87 (456)
382 1q3t_A Cytidylate kinase; nucl 95.5 0.0081 2.8E-07 51.7 3.5 27 119-145 12-38 (236)
383 3r20_A Cytidylate kinase; stru 95.5 0.007 2.4E-07 52.2 3.1 24 123-146 9-32 (233)
384 2www_A Methylmalonic aciduria 95.5 0.013 4.4E-07 53.8 5.0 40 121-166 72-111 (349)
385 3con_A GTPase NRAS; structural 95.5 0.047 1.6E-06 44.6 8.0 22 125-146 23-44 (190)
386 2pt5_A Shikimate kinase, SK; a 95.5 0.0075 2.6E-07 48.6 3.0 22 125-146 2-23 (168)
387 1cp2_A CP2, nitrogenase iron p 95.5 0.012 4.2E-07 51.4 4.7 38 125-168 3-40 (269)
388 3fwy_A Light-independent proto 95.5 0.012 4.2E-07 53.0 4.7 43 119-167 44-86 (314)
389 3exa_A TRNA delta(2)-isopenten 95.5 0.017 5.7E-07 52.0 5.4 23 123-145 3-25 (322)
390 1ex7_A Guanylate kinase; subst 95.4 0.0081 2.8E-07 49.9 3.2 22 125-146 3-24 (186)
391 2woj_A ATPase GET3; tail-ancho 95.4 0.018 6.1E-07 52.9 5.7 51 110-168 7-59 (354)
392 1gtv_A TMK, thymidylate kinase 95.3 0.0043 1.5E-07 52.2 1.0 23 125-147 2-24 (214)
393 1ak2_A Adenylate kinase isoenz 95.3 0.01 3.5E-07 50.9 3.5 25 122-146 15-39 (233)
394 3bfv_A CAPA1, CAPB2, membrane 95.3 0.018 6.1E-07 50.8 5.1 41 122-168 81-122 (271)
395 3io3_A DEHA2D07832P; chaperone 95.3 0.021 7.2E-07 52.3 5.7 50 110-167 7-58 (348)
396 3m6a_A ATP-dependent protease 95.3 0.0097 3.3E-07 58.0 3.7 26 122-147 107-132 (543)
397 2xb4_A Adenylate kinase; ATP-b 95.3 0.009 3.1E-07 50.9 3.0 22 125-146 2-23 (223)
398 2f1r_A Molybdopterin-guanine d 95.2 0.005 1.7E-07 50.4 1.2 24 124-147 3-26 (171)
399 2afh_E Nitrogenase iron protei 95.2 0.014 4.9E-07 51.6 4.4 38 125-168 4-41 (289)
400 2grj_A Dephospho-COA kinase; T 95.2 0.01 3.4E-07 49.6 3.1 24 123-146 12-35 (192)
401 4edh_A DTMP kinase, thymidylat 95.2 0.018 6.2E-07 48.8 4.8 27 121-147 4-30 (213)
402 3sop_A Neuronal-specific septi 95.2 0.0097 3.3E-07 52.5 3.0 21 125-145 4-24 (270)
403 2p6r_A Afuhel308 helicase; pro 95.1 0.012 4E-07 59.2 3.6 39 123-167 40-78 (702)
404 3ake_A Cytidylate kinase; CMP 95.1 0.012 4E-07 49.2 3.1 21 125-145 4-24 (208)
405 1e4v_A Adenylate kinase; trans 95.1 0.011 3.8E-07 49.8 3.0 22 125-146 2-23 (214)
406 1ltq_A Polynucleotide kinase; 95.1 0.011 3.7E-07 52.7 3.1 22 124-145 3-24 (301)
407 3pqc_A Probable GTP-binding pr 95.0 0.46 1.6E-05 38.4 12.7 22 125-146 25-46 (195)
408 3d3q_A TRNA delta(2)-isopenten 95.0 0.014 4.6E-07 53.2 3.4 23 124-146 8-30 (340)
409 2v6i_A RNA helicase; membrane, 95.0 0.13 4.5E-06 48.3 10.4 39 122-166 1-40 (431)
410 1ihu_A Arsenical pump-driving 95.0 0.022 7.4E-07 56.0 5.1 40 122-167 7-46 (589)
411 3zvl_A Bifunctional polynucleo 95.0 0.012 3.9E-07 55.4 3.0 24 122-145 257-280 (416)
412 2f6r_A COA synthase, bifunctio 95.0 0.013 4.5E-07 51.9 3.2 22 123-144 75-96 (281)
413 1f2t_A RAD50 ABC-ATPase; DNA d 94.9 0.016 5.6E-07 46.1 3.4 22 124-145 24-45 (149)
414 1ojl_A Transcriptional regulat 94.9 0.021 7E-07 51.3 4.4 39 123-167 25-63 (304)
415 3hws_A ATP-dependent CLP prote 94.9 0.022 7.4E-07 52.3 4.6 26 122-147 50-75 (363)
416 3ea0_A ATPase, para family; al 94.9 0.03 1E-06 47.9 5.3 40 123-168 4-45 (245)
417 1ihu_A Arsenical pump-driving 94.9 0.021 7.3E-07 56.1 4.7 52 110-167 313-365 (589)
418 2fz4_A DNA repair protein RAD2 94.8 0.02 6.7E-07 49.4 3.8 33 125-166 110-142 (237)
419 1sxj_D Activator 1 41 kDa subu 94.8 0.023 8E-07 51.5 4.5 22 126-147 61-82 (353)
420 3v9p_A DTMP kinase, thymidylat 94.8 0.015 5.3E-07 49.8 3.0 29 119-147 21-49 (227)
421 3crm_A TRNA delta(2)-isopenten 94.8 0.015 5.1E-07 52.6 3.0 23 124-146 6-28 (323)
422 1w1w_A Structural maintenance 94.7 0.017 5.9E-07 54.4 3.6 26 120-145 23-48 (430)
423 1bif_A 6-phosphofructo-2-kinas 94.7 0.42 1.4E-05 45.4 13.3 25 123-147 39-63 (469)
424 2gj8_A MNME, tRNA modification 94.7 0.017 5.8E-07 46.8 3.1 24 122-145 3-26 (172)
425 1vec_A ATP-dependent RNA helic 94.7 0.075 2.6E-06 44.0 7.2 39 125-166 42-80 (206)
426 3tqf_A HPR(Ser) kinase; transf 94.7 0.018 6.1E-07 47.0 3.1 24 123-146 16-39 (181)
427 1qhl_A Protein (cell division 94.7 0.0022 7.4E-08 55.2 -2.6 28 124-153 28-55 (227)
428 3clv_A RAB5 protein, putative; 94.7 0.27 9.3E-06 39.9 10.6 22 125-146 9-30 (208)
429 4f92_B U5 small nuclear ribonu 94.7 0.046 1.6E-06 60.2 7.1 137 121-274 940-1094(1724)
430 1nij_A Hypothetical protein YJ 94.7 0.015 5.1E-07 52.5 2.8 23 123-145 4-26 (318)
431 3l9o_A ATP-dependent RNA helic 94.7 0.046 1.6E-06 57.7 6.8 101 120-232 196-304 (1108)
432 4b3f_X DNA-binding protein smu 94.6 0.026 8.9E-07 56.1 4.8 41 121-167 203-243 (646)
433 2o5v_A DNA replication and rep 94.6 0.018 6.1E-07 53.0 3.3 36 108-145 13-48 (359)
434 1g3q_A MIND ATPase, cell divis 94.6 0.029 9.8E-07 47.9 4.4 37 125-167 5-41 (237)
435 2oze_A ORF delta'; para, walke 94.6 0.025 8.7E-07 50.2 4.2 40 123-168 34-76 (298)
436 2woo_A ATPase GET3; tail-ancho 94.6 0.036 1.2E-06 50.2 5.3 40 123-168 19-58 (329)
437 1f2t_B RAD50 ABC-ATPase; DNA d 94.6 0.16 5.4E-06 40.3 8.4 61 217-310 80-140 (148)
438 3of5_A Dethiobiotin synthetase 94.6 0.53 1.8E-05 40.0 12.4 33 126-164 7-40 (228)
439 3lv8_A DTMP kinase, thymidylat 94.6 0.03 1E-06 48.2 4.5 29 119-147 23-51 (236)
440 2jlq_A Serine protease subunit 94.6 0.091 3.1E-06 49.7 8.2 50 122-181 18-68 (451)
441 1oix_A RAS-related protein RAB 94.6 0.018 6.3E-07 47.5 3.0 21 125-145 31-51 (191)
442 3foz_A TRNA delta(2)-isopenten 94.6 0.02 6.9E-07 51.3 3.3 24 123-146 10-33 (316)
443 3k1j_A LON protease, ATP-depen 94.5 0.024 8.1E-07 56.0 4.1 27 119-145 56-82 (604)
444 3fkq_A NTRC-like two-domain pr 94.5 0.027 9.2E-07 52.0 4.3 40 121-166 141-181 (373)
445 2z83_A Helicase/nucleoside tri 94.5 0.24 8.2E-06 46.9 11.0 41 120-166 18-59 (459)
446 3cwq_A Para family chromosome 94.5 0.035 1.2E-06 46.7 4.6 37 125-168 3-39 (209)
447 2ga8_A Hypothetical 39.9 kDa p 94.5 0.028 9.5E-07 51.4 4.1 28 120-147 19-48 (359)
448 2f9l_A RAB11B, member RAS onco 94.5 0.019 6.6E-07 47.6 2.9 22 125-146 7-28 (199)
449 3q9l_A Septum site-determining 94.4 0.034 1.2E-06 48.1 4.4 37 125-167 4-41 (260)
450 1wcv_1 SOJ, segregation protei 94.4 0.026 8.8E-07 49.1 3.6 40 123-168 6-46 (257)
451 2ocp_A DGK, deoxyguanosine kin 94.4 0.022 7.6E-07 49.0 3.1 26 122-147 1-26 (241)
452 2dy1_A Elongation factor G; tr 94.3 0.061 2.1E-06 53.6 6.6 27 120-146 6-32 (665)
453 1coo_A RNA polymerase alpha su 94.2 0.032 1.1E-06 40.8 3.2 52 31-82 26-77 (98)
454 2wsm_A Hydrogenase expression/ 94.2 0.053 1.8E-06 45.6 5.0 37 125-168 32-68 (221)
455 3tmk_A Thymidylate kinase; pho 94.1 0.031 1.1E-06 47.5 3.5 27 121-147 3-29 (216)
456 2wji_A Ferrous iron transport 94.1 0.026 8.8E-07 45.2 2.9 21 125-145 5-25 (165)
457 3la6_A Tyrosine-protein kinase 94.1 0.05 1.7E-06 48.3 5.0 40 123-168 92-132 (286)
458 4tmk_A Protein (thymidylate ki 94.1 0.044 1.5E-06 46.4 4.4 26 122-147 2-27 (213)
459 3upu_A ATP-dependent DNA helic 94.1 0.036 1.2E-06 52.6 4.3 36 125-166 47-83 (459)
460 3sfz_A APAF-1, apoptotic pepti 94.1 0.12 4E-06 54.9 8.6 56 111-168 135-190 (1249)
461 2r44_A Uncharacterized protein 94.1 0.049 1.7E-06 49.1 4.9 24 123-146 46-69 (331)
462 1ni3_A YCHF GTPase, YCHF GTP-b 94.1 0.033 1.1E-06 51.7 3.8 30 116-145 13-42 (392)
463 2zej_A Dardarin, leucine-rich 94.0 0.023 7.9E-07 46.4 2.3 20 125-144 4-23 (184)
464 3dkp_A Probable ATP-dependent 93.9 0.079 2.7E-06 45.4 5.7 41 125-167 68-108 (245)
465 3qks_A DNA double-strand break 93.9 0.035 1.2E-06 46.6 3.2 22 124-145 24-45 (203)
466 1p5z_B DCK, deoxycytidine kina 93.9 0.018 6.1E-07 50.3 1.5 25 121-145 22-46 (263)
467 1g8p_A Magnesium-chelatase 38 93.8 0.023 7.9E-07 51.5 2.2 22 126-147 48-69 (350)
468 3ld9_A DTMP kinase, thymidylat 93.8 0.037 1.3E-06 47.2 3.4 27 121-147 19-45 (223)
469 3qxc_A Dethiobiotin synthetase 93.8 0.74 2.5E-05 39.6 11.7 46 106-164 11-57 (242)
470 2chq_A Replication factor C sm 93.8 0.048 1.6E-06 48.5 4.3 22 126-147 41-62 (319)
471 3e1s_A Exodeoxyribonuclease V, 93.8 0.056 1.9E-06 52.9 5.0 39 122-166 203-241 (574)
472 2h92_A Cytidylate kinase; ross 93.8 0.033 1.1E-06 47.0 2.9 23 123-145 3-25 (219)
473 1q0u_A Bstdead; DEAD protein, 93.8 0.15 5.1E-06 42.8 7.1 39 125-166 43-81 (219)
474 3eph_A TRNA isopentenyltransfe 93.7 0.034 1.2E-06 51.7 3.1 23 124-146 3-25 (409)
475 1z2a_A RAS-related protein RAB 93.7 0.035 1.2E-06 44.1 2.9 22 125-146 7-28 (168)
476 3k9g_A PF-32 protein; ssgcid, 93.6 0.054 1.9E-06 47.2 4.2 39 123-168 27-66 (267)
477 2eyq_A TRCF, transcription-rep 93.6 0.24 8.2E-06 52.6 9.7 50 111-167 611-662 (1151)
478 3bor_A Human initiation factor 93.6 0.11 3.7E-06 44.4 5.9 39 125-166 69-107 (237)
479 2dyk_A GTP-binding protein; GT 93.5 0.038 1.3E-06 43.5 2.8 20 126-145 4-23 (161)
480 1x6v_B Bifunctional 3'-phospho 93.5 0.04 1.4E-06 54.3 3.5 26 122-147 51-76 (630)
481 1t6n_A Probable ATP-dependent 93.5 0.22 7.6E-06 41.6 7.8 38 126-166 54-91 (220)
482 1g41_A Heat shock protein HSLU 93.5 0.063 2.2E-06 50.7 4.6 27 120-147 48-74 (444)
483 1e9r_A Conjugal transfer prote 93.5 0.052 1.8E-06 51.1 4.1 26 124-149 54-79 (437)
484 2xj4_A MIPZ; replication, cell 93.5 0.055 1.9E-06 47.8 4.1 37 125-167 6-43 (286)
485 2xgj_A ATP-dependent RNA helic 93.5 0.12 4.2E-06 53.9 7.2 98 123-232 101-206 (1010)
486 1kao_A RAP2A; GTP-binding prot 93.5 0.04 1.4E-06 43.5 2.8 22 125-146 5-26 (167)
487 2gks_A Bifunctional SAT/APS ki 93.5 0.044 1.5E-06 53.3 3.6 39 122-166 371-409 (546)
488 1m8p_A Sulfate adenylyltransfe 93.5 0.039 1.3E-06 54.0 3.3 39 122-166 395-434 (573)
489 2wjg_A FEOB, ferrous iron tran 93.5 0.039 1.3E-06 44.9 2.9 21 125-145 9-29 (188)
490 2ce2_X GTPase HRAS; signaling 93.4 0.04 1.4E-06 43.4 2.8 21 126-146 6-26 (166)
491 3ez9_A Para; DNA binding, wing 93.4 0.085 2.9E-06 49.1 5.4 46 122-167 110-156 (403)
492 1byi_A Dethiobiotin synthase; 93.4 0.064 2.2E-06 45.2 4.2 33 126-164 5-37 (224)
493 4dhe_A Probable GTP-binding pr 93.4 0.46 1.6E-05 39.6 9.6 22 125-146 31-52 (223)
494 4hlc_A DTMP kinase, thymidylat 93.4 0.081 2.8E-06 44.4 4.7 25 123-147 2-26 (205)
495 1u8z_A RAS-related protein RAL 93.3 0.043 1.5E-06 43.3 2.9 22 125-146 6-27 (168)
496 2db3_A ATP-dependent RNA helic 93.3 0.66 2.3E-05 43.4 11.5 27 24-50 51-77 (434)
497 1hv8_A Putative ATP-dependent 93.3 0.22 7.6E-06 44.8 8.0 39 124-166 45-83 (367)
498 4f92_B U5 small nuclear ribonu 93.3 0.2 6.8E-06 55.3 8.7 62 120-181 92-158 (1724)
499 2vf7_A UVRA2, excinuclease ABC 93.3 0.033 1.1E-06 56.9 2.4 42 220-274 401-442 (842)
500 2nzj_A GTP-binding protein REM 93.2 0.045 1.5E-06 43.8 2.8 21 125-145 6-26 (175)
No 1
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=100.00 E-value=3.4e-53 Score=399.48 Aligned_cols=326 Identities=64% Similarity=1.031 Sum_probs=277.3
Q ss_pred hhhhhcCCCccchhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHHH
Q 019381 17 ELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLH 96 (342)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (342)
..++....|.+++.|+..||++..+++|+++||.|+++++..++.+|++++++++.++.++++.+++..+.++.++.+++
T Consensus 72 ~~~~~~~~~~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~ 151 (400)
T 3lda_A 72 YDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFH 151 (400)
T ss_dssp ------CCSCBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHHHSCCSCCCHHHHH
T ss_pred cccccccCccCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhccccCCCHHHHH
Confidence 35566778889999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred hhhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHH
Q 019381 97 AQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQ 176 (342)
Q Consensus 97 ~~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~ 176 (342)
+.+....+++||++.||++|+|||++|++++|+|+||||||||+++++..++.++..|+.+++++||++|..+...+++.
T Consensus 152 ~~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~ 231 (400)
T 3lda_A 152 MRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS 231 (400)
T ss_dssp HHHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH
T ss_pred hhhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH
Confidence 88778889999999999999999999999999999999999999999999999888888889999999999999999999
Q ss_pred HHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHH
Q 019381 177 IADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQ 256 (342)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk 256 (342)
++++++++++++++++.+.+..+.......+..+...+...++++||||+++.+++.++.+++++.+|++.+.++++.|+
T Consensus 232 ~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~ 311 (400)
T 3lda_A 232 IAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQ 311 (400)
T ss_dssp HHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887777788777777778999999999999998877766778889888999999999
Q ss_pred HHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCC
Q 019381 257 KLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQG 336 (342)
Q Consensus 257 ~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~G 336 (342)
+++++++++||+++|++...++..+|.+++..|++|..|+|.+|++++|++.++..|.++|.|+|++|++.+.|.|+++|
T Consensus 312 ~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~g~~R~l~v~K~R~~p~~e~~F~It~~G 391 (400)
T 3lda_A 312 RLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDG 391 (400)
T ss_dssp HHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECSTTEEEEEEEECSSSCSCEEEEEEETTE
T ss_pred HHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecCCCcEEEEEEcCCCCCCCceEEEEeCCc
Confidence 99999999999999997766654356567788999999999999999999988889999999999999988999999999
Q ss_pred CCCCCC
Q 019381 337 VADVKD 342 (342)
Q Consensus 337 i~~~~~ 342 (342)
|.+++|
T Consensus 392 i~~~~~ 397 (400)
T 3lda_A 392 VGDPRE 397 (400)
T ss_dssp EECCC-
T ss_pred cccccc
Confidence 999875
No 2
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=100.00 E-value=1.2e-52 Score=390.71 Aligned_cols=318 Identities=52% Similarity=0.819 Sum_probs=217.8
Q ss_pred Cc-cchhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHHHhhhcccc
Q 019381 25 PF-PVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEII 103 (342)
Q Consensus 25 ~~-~~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (342)
|+ +++.|+.+||++.++.+|+++|+.|+++++..++.+|+.+++++..++.++++.+.+..+.++.++.++++......
T Consensus 23 ~~~~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 102 (343)
T 1v5w_A 23 LFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVF 102 (343)
T ss_dssp ---------------------------------------------------------------CCSEEHHHHHHHGGGCC
T ss_pred ccCcHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCCCcHHHHHhhhcccc
Confidence 77 89999999999999999999999999999999999999999999999999999999888888999999987766788
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL 183 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 183 (342)
+++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+..+||.+++|+||++|+.+++.++.+++++++.
T Consensus 103 ~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~ 182 (343)
T 1v5w_A 103 HITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV 182 (343)
T ss_dssp CBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred eeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999998888878888899999999999999999999999999
Q ss_pred ChhhhhcceeEeecCCHHHHHHHHHHHHHHhHh--cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 019381 184 NGADVLENVAYARAYNTDHQSRLLLEAASMMVE--TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE 261 (342)
Q Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~--~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~ 261 (342)
+++.+++++.+.++.+..++.+++..+...+.. .++++|||||++.+++.++.+++++.+|++.+.++++.|+.++++
T Consensus 183 ~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~ 262 (343)
T 1v5w_A 183 DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEE 262 (343)
T ss_dssp CHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 998889999998888888888888877787777 789999999999999876654456677877899999999999999
Q ss_pred hCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCCCCCCC
Q 019381 262 FGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVADVK 341 (342)
Q Consensus 262 ~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~Gi~~~~ 341 (342)
++++||++||+++..+.+.+|.+++..|+||..|.|.+|+++.|++.++..|.++|.|+|++|.+.+.|+|+++||.+++
T Consensus 263 ~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~~~~r~~~v~K~r~~p~~~~~f~I~~~Gi~~~~ 342 (343)
T 1v5w_A 263 YNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAK 342 (343)
T ss_dssp HTCEEEEEECC-------------------CCTTTTSSSEEEEEEESSTTEEEEEEEECTTCCSSCEEEEEETTEEEECC
T ss_pred hCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEcCCCEEEEEEEECCCCCCeeEEEEEeCCCccCCC
Confidence 99999999999987654224534567899999999999999999998888999999999999998899999999999988
Q ss_pred C
Q 019381 342 D 342 (342)
Q Consensus 342 ~ 342 (342)
|
T Consensus 343 ~ 343 (343)
T 1v5w_A 343 E 343 (343)
T ss_dssp C
T ss_pred C
Confidence 7
No 3
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=100.00 E-value=5.7e-51 Score=376.96 Aligned_cols=316 Identities=38% Similarity=0.674 Sum_probs=207.5
Q ss_pred cCCCccchhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHHHhhhcc
Q 019381 22 QHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLE 101 (342)
Q Consensus 22 ~~~~~~~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (342)
+..+++++.|+ ||++.++++|+++|+.|+++++..++.+|++++++++.++.++++.+....+.++.++.++++....
T Consensus 8 ~~~~~~~~~l~--g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (324)
T 2z43_A 8 KKNIKTINDLP--GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKERMN 85 (324)
T ss_dssp ------------------------------------------------------------------CCCCHHHHHHHHCS
T ss_pred CCCCccHHHcC--CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCccchhhhhhhhcc
Confidence 45567788887 9999999999999999999999999999999999999999999999998888889999999876667
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+..+||.+++|+||++|+.+++.++.++++++
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999988877777778899999999999899999999999
Q ss_pred CCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHh-cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 019381 182 GLNGADVLENVAYARAYNTDHQSRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLAD 260 (342)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~-~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~ 260 (342)
+.+++++++++.+.++.+..++.+++..+...+.. .++++||||+++.++..++.++++..+|++.+.++++.|+.+++
T Consensus 166 g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~ 245 (324)
T 2z43_A 166 GLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAE 245 (324)
T ss_dssp TCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999888999999988888877788888888877 78999999999999876665445667777789999999999999
Q ss_pred HhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCCCCCC
Q 019381 261 EFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVADV 340 (342)
Q Consensus 261 ~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~Gi~~~ 340 (342)
+++++||++||+++..+. .| ++...|++|..|.|.+|+++.|++.++..|.++|.|+|++|.+.+.|+|+++||+++
T Consensus 246 ~~~~~Vi~~nq~~~~~~~--~~-~~~~~~~gg~~l~~~~d~~l~l~r~~~~~r~~~v~k~~~~p~~~~~f~I~~~Gi~~~ 322 (324)
T 2z43_A 246 VYDIAVIITNQVMARPDM--FY-GDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGIRDA 322 (324)
T ss_dssp HHTCEEEEEEEC---------------------------CEEEEEEECSTTEEEEEEEECSSSCCEEEEEEEETTEEECC
T ss_pred HhCCEEEEEcceeecCCC--cC-CCCCCCCchHHHHhhCcEEEEEEEcCCCeEEEEEEECCCCCceEEEEEEeCCCcccC
Confidence 999999999999986654 34 566789999999999999999999888899999999999999989999999999998
Q ss_pred CC
Q 019381 341 KD 342 (342)
Q Consensus 341 ~~ 342 (342)
+|
T Consensus 323 ~~ 324 (324)
T 2z43_A 323 EE 324 (324)
T ss_dssp C-
T ss_pred CC
Confidence 86
No 4
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=100.00 E-value=8.5e-49 Score=362.38 Aligned_cols=307 Identities=41% Similarity=0.684 Sum_probs=270.4
Q ss_pred chhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHHHhhhcccccccc
Q 019381 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQITS 107 (342)
Q Consensus 28 ~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t 107 (342)
+..|+ |+++.++.+|+++|+.|+++++..++.+|++++++++.++.+++..+++..+.++.++.++++......+++|
T Consensus 5 ~~~l~--gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~i~T 82 (322)
T 2i1q_A 5 LTDLP--GVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQRSTVWKLST 82 (322)
T ss_dssp CTTST--TCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHHHHHTTCCEECC
T ss_pred HhhcC--CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHHHHhccCCeecC
Confidence 44454 9999999999999999999999999999999999999999999999999988899999999876667889999
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCC---------CCCCCC-CceEEEecCCCCCHHHHHHH
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPL---------DQGGGE-GKAMYIDAEGTFRPQRLLQI 177 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~---------~~g~~~-~~vl~i~~e~~~~~~rl~~~ 177 (342)
|++.||.+|+||+++|++++|+|+||+|||+||++++.+++++. ..||.+ ++|+||++|+++++.++.++
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999877653 334333 79999999999989999999
Q ss_pred HHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHh-cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHH
Q 019381 178 ADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQ 256 (342)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~-~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk 256 (342)
+++++.+++++++++.+.++.+.+++.+++..+...+.. .++++||||+++.++..++.++++..+|++.+.++++.|+
T Consensus 163 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~ 242 (322)
T 2i1q_A 163 AEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLN 242 (322)
T ss_dssp HHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 999999998888999999998888877888888787777 7899999999999987666544556777778999999999
Q ss_pred HHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCC
Q 019381 257 KLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQG 336 (342)
Q Consensus 257 ~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~G 336 (342)
.++++++++||++||+++..+. .| +++..|.+|..|.|.+|+++.|++.++..|++++.|+|++|.+.+.|+|+++|
T Consensus 243 ~la~~~~~~vi~~nq~~~~~~~--~~-g~~~~~~g~~~~~~~~d~~i~l~~~~~~~r~~~v~k~~~~p~~~~~f~I~~~G 319 (322)
T 2i1q_A 243 KLADLFNCVVLVTNQVSAKPDA--FF-GMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKG 319 (322)
T ss_dssp HHHHHTTCEEEEEECEECC----------CCEESSHHHHHHHCSEEEEEEECSTTEEEEEEEECSSSCCEEEEEEEETTE
T ss_pred HHHHHhCCEEEEECceeecCCC--CC-CCCcCCCCcHHHHhcCcEEEEEEecCCCeEEEEEEECCCCCCeEEEEEEeCCC
Confidence 9999999999999999986654 35 56678999999999999999999988888999999999999998999999999
Q ss_pred CCC
Q 019381 337 VAD 339 (342)
Q Consensus 337 i~~ 339 (342)
|++
T Consensus 320 i~~ 322 (322)
T 2i1q_A 320 IQD 322 (322)
T ss_dssp EEC
T ss_pred cCC
Confidence 975
No 5
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=100.00 E-value=6.8e-47 Score=352.31 Aligned_cols=312 Identities=45% Similarity=0.720 Sum_probs=266.3
Q ss_pred CCCccchhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccC-CCCcHHHHHhhhcc
Q 019381 23 HGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL-GFTSATQLHAQRLE 101 (342)
Q Consensus 23 ~~~~~~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 101 (342)
..+.+++.| +|+++.++.+|+++|+.|+++++..++.+|++++++++.++.++++.+.+..+. ++.++.++++....
T Consensus 32 ~~~~~l~~l--~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (349)
T 1pzn_A 32 KIIRSIEDL--PGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRAT 109 (349)
T ss_dssp ---CCSSCC--TTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHHHT
T ss_pred cccccHHHc--CCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhhcc
Confidence 345566667 499999999999999999999999999999999999999999999999998877 88999999887777
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
...++||++.||.+|+||+++|++++|+|+||||||||+++++...+.++..|+.+++|+||+++..+.+.++..+++.+
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~ 189 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR 189 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 88999999999999999999999999999999999999999998887777777677889999999988788899999999
Q ss_pred CCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHh-----cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHH
Q 019381 182 GLNGADVLENVAYARAYNTDHQSRLLLEAASMMVE-----TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQ 256 (342)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~-----~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk 256 (342)
+++++.+++|+.+.+..+.....+.+..+...+.. .++++|||||++++++.++.+++++.+|++.+.++++.|+
T Consensus 190 ~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~ 269 (349)
T 1pzn_A 190 GLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLH 269 (349)
T ss_dssp TCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHH
Confidence 99988999999988877766666777777777766 6899999999999998776555667788888899999999
Q ss_pred HHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCC
Q 019381 257 KLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQG 336 (342)
Q Consensus 257 ~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~G 336 (342)
.++++++++||++||.....+. .| ++...|.+|..|+|.++.+|++++..+..|++++.|+|+.|.+.+.|+|+++|
T Consensus 270 ~la~~~~~tvii~~h~~~~~~~--~~-~~~~~~~~G~~l~~~~~~rL~l~~~~~~~Ri~k~~ks~~~~~~~~~f~It~~G 346 (349)
T 1pzn_A 270 RLANLYDIAVFVTNQVQARPDA--FF-GDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKG 346 (349)
T ss_dssp HHHHHTTCEEEEEEECC------------------CCCCCTTCSEEEEEEECTTSEEEEEESCSSSSCCSEEEEEEETTE
T ss_pred HHHHHcCcEEEEEccccccccc--cc-CCccccCCcceEeecCcEEEEEEEcCCCeEEEEEEeCCCCCCeEEEEEEcCCC
Confidence 9999999999999999875542 23 45678899999999999999999988889999999999999888999999999
Q ss_pred CCC
Q 019381 337 VAD 339 (342)
Q Consensus 337 i~~ 339 (342)
|.+
T Consensus 347 i~d 349 (349)
T 1pzn_A 347 IED 349 (349)
T ss_dssp EEC
T ss_pred CCC
Confidence 975
No 6
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=100.00 E-value=2.9e-38 Score=279.59 Aligned_cols=241 Identities=78% Similarity=1.231 Sum_probs=187.8
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||++++||+++|++++|+|+||+|||||+.+++..++.++..|+.+.+++|++++..+...++..+++.+
T Consensus 3 ~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (243)
T 1n0w_A 3 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERY 82 (243)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT
T ss_pred ceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHc
Confidence 45799999999999999999999999999999999999999998877777667677899999999987888888888999
Q ss_pred CCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 019381 182 GLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE 261 (342)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~ 261 (342)
+++++++++++.+....+..+....+..+...+...++++||||+++.+++..+.+.++..+|++.+.+++..|+.++++
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~ 162 (243)
T 1n0w_A 83 GLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE 162 (243)
T ss_dssp TCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888899888888877777777777777777889999999999998765544344466666788999999999999
Q ss_pred hCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecCCCCCCC
Q 019381 262 FGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQGVADVK 341 (342)
Q Consensus 262 ~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~Gi~~~~ 341 (342)
++++||+++|..+..+....|.++...|+++..|.+.+|.++.|++.++..|.++|.|+|++|.+.++|+|++.||+.++
T Consensus 163 ~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~~~~r~l~v~K~r~~~~~~~~f~I~~~Gi~~~~ 242 (243)
T 1n0w_A 163 FGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAK 242 (243)
T ss_dssp HCCEEEEEC-------------------------CCTTCEEEEEEECSTTEEEEEECCBTTBSCEEEEEEEETTEEECCC
T ss_pred cCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcCCCeEEEEEEECCCCCCCeEEEEEeCCccccCC
Confidence 99999999999886553212434556789999999999999999998788999999999999988899999999999998
Q ss_pred C
Q 019381 342 D 342 (342)
Q Consensus 342 ~ 342 (342)
|
T Consensus 243 ~ 243 (243)
T 1n0w_A 243 D 243 (243)
T ss_dssp C
T ss_pred C
Confidence 7
No 7
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=100.00 E-value=1.2e-33 Score=247.91 Aligned_cols=224 Identities=48% Similarity=0.804 Sum_probs=187.1
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||++++||+++|++++|+||||||||||+..++.....++..|+.+++++|++++..+...++..+++.
T Consensus 3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~ 82 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN 82 (231)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999998777777767767788999999988788888899999
Q ss_pred cCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhH-----hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHH
Q 019381 181 YGLNGADVLENVAYARAYNTDHQSRLLLEAASMMV-----ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSL 255 (342)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~L 255 (342)
+++.++++.+++.+....+.......+..+...+. ..+++++++|+++..++.+..+.++..+|.+.+.+++..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 83 RGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp TTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 99999889999998888777666555666666665 6789999999999998877665555677777788999999
Q ss_pred HHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecCCeEEEEEEeCCCCCCeeEEEEEecC
Q 019381 256 QKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAQ 335 (342)
Q Consensus 256 k~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~~~r~~~v~K~r~~~~~~~~f~I~~~ 335 (342)
+.++++++++||+++|..+. +|..|.+.+|.++.+++.+...|.+++.|+|++|.+.+.|+|+++
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~---------------~g~~~~~~~d~~l~l~~~~~~~r~l~~~K~r~~~~~~~~f~i~~~ 227 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQAN---------------GGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEK 227 (231)
T ss_dssp HHHHHHHTCEEEEEEECC------------------------CCSEEEEEEECTTSCEEEEEESCC--CCSCEEEEEETT
T ss_pred HHHHHHCCCeEEEEeecccC---------------cchhhHhhceEEEEEEecCCCeEEEEEEeCCCCCCceEEEEEecc
Confidence 99999999999999999873 356899999999999998788999999999999998889999999
Q ss_pred CCCC
Q 019381 336 GVAD 339 (342)
Q Consensus 336 Gi~~ 339 (342)
||++
T Consensus 228 Gl~~ 231 (231)
T 4a74_A 228 GIED 231 (231)
T ss_dssp EEEC
T ss_pred cccC
Confidence 9975
No 8
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=100.00 E-value=2.2e-32 Score=238.09 Aligned_cols=217 Identities=30% Similarity=0.458 Sum_probs=179.4
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL 183 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 183 (342)
+++||++.||++++||+++|++++|+|+||+|||||+.+++. . .+.+++|++++..++..++..+++.++.
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~------~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 71 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L------SGKKVAYVDTEGGFSPERLVQMAETRGL 71 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H------HCSEEEEEESSCCCCHHHHHHHHHTTTC
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H------cCCcEEEEECCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999986 2 3568999999987778888888888888
Q ss_pred ChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhC
Q 019381 184 NGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 263 (342)
Q Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~ 263 (342)
+++++++++.+....+..++...+..+.+++.. ++++||||+++.+++.... ...+.+.+.++++.|+.++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~----~~~~~~~~~~~~~~L~~l~~~~~ 146 (220)
T 2cvh_A 72 NPEEALSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEEN----RSGLIAELSRQLQVLLWIARKHN 146 (220)
T ss_dssp CHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGG----SSTTHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCc----hHHHHHHHHHHHHHHHHHHHHcC
Confidence 888788888777776666655666666666544 7999999999998764321 11233457788999999999999
Q ss_pred CEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec-CCeEEEEEEeCCCCCCee-EEEEEecCCCCCC
Q 019381 264 VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR-GEERICKVISSPCLAEAE-ARFQISAQGVADV 340 (342)
Q Consensus 264 ~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~-~~~r~~~v~K~r~~~~~~-~~f~I~~~Gi~~~ 340 (342)
++||+++|..+..+. ....|.++..|.+.+|.++.|++.. +..|.+.|.|+|+++.+. ++|+|+++||+.+
T Consensus 147 ~~vi~~~h~~~~~~~------~~~~p~~~~~~~~~~d~vi~l~~~~~~~~r~l~v~K~r~~~~~~~~~f~I~~~Gi~~~ 219 (220)
T 2cvh_A 147 IPVIVINQVHFDSRT------EMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDV 219 (220)
T ss_dssp CCEEEEECSSSSCTT------SSCCSCCCHHHHHTSSEEEEEEECSSTTEEEEEEEECSSSCTTCEEEEEEETTEEEEC
T ss_pred CEEEEEeeEEEcCCC------CccccCCCcceeecCcEEEEEEEecCCCEEEEEEEeCCCCCCCceEEEEEeCCceecC
Confidence 999999999875442 3467889999999999999999873 568999999999988866 8999999999864
No 9
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.98 E-value=2.7e-31 Score=245.91 Aligned_cols=219 Identities=24% Similarity=0.390 Sum_probs=175.9
Q ss_pred ccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 102 IIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
..+++||++.||.+|+ ||+++|++++|+||||+||||||++++..++. .+++|+||++|..+... ++++
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~------~gg~VlyId~E~s~~~~----ra~r 108 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK------MGGVAAFIDAEHALDPV----YAKN 108 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHH----HHHH
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEecccccchH----HHHH
Confidence 6789999999999999 99999999999999999999999999987765 46789999999988774 5667
Q ss_pred cCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc-cccCCC-cc--hHHHHHHHHHHHHHHH
Q 019381 181 YGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR-TDFSGR-GE--LSARQMHLAKFLRSLQ 256 (342)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~-~~--~~~r~~~l~~i~~~Lk 256 (342)
++++++ ++.+..+.+.++....+ ...+...+++++|||+++.+++ .++.+. ++ .....+.+.++++.|+
T Consensus 109 lgv~~~----~l~i~~~~~~e~~l~~~---~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~ 181 (356)
T 3hr8_A 109 LGVDLK----SLLISQPDHGEQALEIV---DELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIA 181 (356)
T ss_dssp HTCCGG----GCEEECCSSHHHHHHHH---HHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHH
T ss_pred cCCchh----hhhhhhccCHHHHHHHH---HHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 787765 46666776666554443 3445557799999999999986 444432 11 1123456788999999
Q ss_pred HHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---------CCeEEEEEEeCCCCCC-e
Q 019381 257 KLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE-A 326 (342)
Q Consensus 257 ~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---------~~~r~~~v~K~r~~~~-~ 326 (342)
.++++++++||++||+....+. +| +++..|+||..|+|.+++++.|++.. +..|.+++.|||+.|+ .
T Consensus 182 ~lak~~~~tVI~inqv~~k~g~--~f-g~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~g~~~~vkvvKnr~~~~~~ 258 (356)
T 3hr8_A 182 GSVNKSKAVVIFTNQIRMKIGV--MF-GSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVISVKIVKNKVAPPFK 258 (356)
T ss_dssp HHHHTSSCEEEEEEESSSCSSS--SS-CSCSSCTHHHHHHHHCSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCC
T ss_pred HHHHhcCCEEEEEeeeeecccc--cc-CCcccCCCcchhhhhCcEEEEEEeccccccCCcccccEEEEEEEeCCCCCCCc
Confidence 9999999999999999765553 57 67788999999999999999999842 3468999999999865 4
Q ss_pred eEEEEEe-cCCCCCC
Q 019381 327 EARFQIS-AQGVADV 340 (342)
Q Consensus 327 ~~~f~I~-~~Gi~~~ 340 (342)
.+.|+|. .+||..+
T Consensus 259 ~~~f~i~~~~Gi~~~ 273 (356)
T 3hr8_A 259 TAQTYIIYGKGIDRE 273 (356)
T ss_dssp EEEEEEETTTBSCHH
T ss_pred eEEEEEeeCCCcChh
Confidence 5899994 8999753
No 10
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.97 E-value=3.5e-30 Score=239.45 Aligned_cols=220 Identities=26% Similarity=0.405 Sum_probs=163.5
Q ss_pred ccccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
....+++||++.||.+|+ |||++|++++|+|+||+|||+||++++.+++. .+.+|+||++|+++.+. ++
T Consensus 39 ~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~------~g~~vlyid~E~s~~~~----~a 108 (356)
T 1u94_A 39 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPI----YA 108 (356)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHH----HH
T ss_pred ccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCCCccHH----HH
Confidence 356789999999999999 99999999999999999999999999988876 46789999999988764 35
Q ss_pred HHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc-cccCCC-cch--HHHHHHHHHHHHH
Q 019381 179 DRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR-TDFSGR-GEL--SARQMHLAKFLRS 254 (342)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~-~~~--~~r~~~l~~i~~~ 254 (342)
++++.+.+ ++.+.++.+..+..+.+ ..++...++++||||+++.++. .++.+. ++. ..+.+.+.++++.
T Consensus 109 ~~~g~~~~----~l~i~~~~~~e~~~~~~---~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~ 181 (356)
T 1u94_A 109 RKLGVDID----NLLCSQPDTGEQALEIC---DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 181 (356)
T ss_dssp HHTTCCGG----GCEEECCSSHHHHHHHH---HHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHH
T ss_pred HHcCCChh----heeeeCCCCHHHHHHHH---HHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHH
Confidence 67787754 55666666555444433 3444557899999999999974 332211 110 0223467889999
Q ss_pred HHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---------CCeEEEEEEeCCCCC-
Q 019381 255 LQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLA- 324 (342)
Q Consensus 255 Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---------~~~r~~~v~K~r~~~- 324 (342)
|+.++++++++||++||+++.++. +| +++..|.+|..|.|.++.++.+++.+ +..+.++|.|+|.+|
T Consensus 182 L~~~a~~~~~~VI~~nq~~~~~~~--~f-g~~~~~~gG~~l~~~advrl~l~r~~~~k~g~~~~g~~~~~~i~K~r~~p~ 258 (356)
T 1u94_A 182 LAGNLKQSNTLLIFINQIRMKIGV--MF-GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAP 258 (356)
T ss_dssp HHHHHHHHTCEEEEEEC-----------------CTTCSHHHHHCSEEEEEEEEEEEESSSSEEEEEEEEEEEEESSBCS
T ss_pred HHHHHHHhCCEEEEEeccccccCc--cc-CCCcccCCCcceeeeccEEEEEEEeeeeccCccccCcEEEEEECCCccCCC
Confidence 999999999999999999987654 45 46678999999999999999999864 246899999999987
Q ss_pred CeeEEEEEe-cCCCCC
Q 019381 325 EAEARFQIS-AQGVAD 339 (342)
Q Consensus 325 ~~~~~f~I~-~~Gi~~ 339 (342)
.+.+.|+|. .+||..
T Consensus 259 ~~~~~f~i~~~~Gi~~ 274 (356)
T 1u94_A 259 FKQAEFQILYGEGINF 274 (356)
T ss_dssp CCEEEEEEETTTEECH
T ss_pred CCcEEEEEEcCCCcCc
Confidence 577899994 788863
No 11
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.97 E-value=6.1e-30 Score=230.06 Aligned_cols=220 Identities=14% Similarity=0.192 Sum_probs=158.0
Q ss_pred ccccccCChhhHhhhc----CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHH
Q 019381 102 IIQITSGSRELDKILE----GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI 177 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~----GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~ 177 (342)
..+++||++.||.+|+ ||+++| +++|+|+||+||||||++++.+++.. +.+++|+|||+|.++.+. +
T Consensus 4 ~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~----g~g~~vlyId~E~s~~~~----r 74 (333)
T 3io5_A 4 MDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQ----YPDAVCLFYDSEFGITPA----Y 74 (333)
T ss_dssp --CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHH----CTTCEEEEEESSCCCCHH----H
T ss_pred CCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEeccchhhHH----H
Confidence 4579999999999999 999999 99999999999999999999888752 125789999999999874 4
Q ss_pred HHHcCCChhhhhcceeEeecCCHHHH-HHHHHHHHHHhHhcCceEEEEeccccccc-cccCCC-cc--hH--HHHHHHHH
Q 019381 178 ADRYGLNGADVLENVAYARAYNTDHQ-SRLLLEAASMMVETRFALMIVDSATALYR-TDFSGR-GE--LS--ARQMHLAK 250 (342)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~-~~--~~--~r~~~l~~ 250 (342)
+++++++.+ ++.+.++.+.+++ .++++.+.. +...++++|||||++++++ .+..+. ++ .. .+.+.+..
T Consensus 75 a~~lGvd~d----~llv~~~~~~E~~~l~i~~~l~~-i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~ 149 (333)
T 3io5_A 75 LRSMGVDPE----RVIHTPVQSLEQLRIDMVNQLDA-IERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKS 149 (333)
T ss_dssp HHHTTCCGG----GEEEEECSBHHHHHHHHHHHHHT-CCTTCCEEEEEECSTTCBCC--------------CTHHHHHHH
T ss_pred HHHhCCCHH----HeEEEcCCCHHHHHHHHHHHHHH-hhccCceEEEEecccccccchhccCccccccccHHHHHHHHHH
Confidence 778898876 5667788777766 554443321 4557799999999999985 444332 11 11 24556888
Q ss_pred HHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---------CCeEEEEEEeCC
Q 019381 251 FLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSP 321 (342)
Q Consensus 251 i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---------~~~r~~~v~K~r 321 (342)
.++.|..+|+++|++||+|||+++ .+ .+| +++. +.||..+ |.+.+|+.+++.. |....+.+.|++
T Consensus 150 ~LrkL~~~ak~~~i~vi~tNQV~k-~G--~~f-g~p~-~~GG~~l-~~ss~Rl~lrk~~~ik~~~~~~G~~~~v~~~k~k 223 (333)
T 3io5_A 150 LFRIVTPYFSTKNIPCIAINHTYE-TQ--EMF-SKTV-MGGGTGP-MYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSR 223 (333)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEC--------------------CCG-GGGSSEEEEEEEC----------CEEEEEEEECS
T ss_pred HHHHHHHHHHHhCCEEEEECCeee-cC--ccc-CCCC-CCCccee-eeeeEEEEEEeccccccCCccEEeEEEEeEEEEE
Confidence 888999999999999999999988 44 378 5554 5899999 9999999999854 355678889999
Q ss_pred CCCCe-eEEEEEec-CCCCCCC
Q 019381 322 CLAEA-EARFQISA-QGVADVK 341 (342)
Q Consensus 322 ~~~~~-~~~f~I~~-~Gi~~~~ 341 (342)
-.+.. ..+|+|.. +||....
T Consensus 224 v~k~k~~~~~~i~~~~Gi~~~~ 245 (333)
T 3io5_A 224 TVKEKSKFFIDVKFDGGIDPYS 245 (333)
T ss_dssp SBCTTCEEEEEBCTTSCBCTTT
T ss_pred EccCCcCCcEEEEecCCCChHH
Confidence 76554 46899986 8887643
No 12
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.5e-30 Score=230.76 Aligned_cols=216 Identities=15% Similarity=0.189 Sum_probs=159.4
Q ss_pred ccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~ 179 (342)
...++++||++.||++|+|||++|++++|+|+||+|||+||+++|.+++.. .+.+|+|+++|++ ...+...+.
T Consensus 7 ~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-----~~~~v~~~s~E~~--~~~~~~~~~ 79 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEER--ARDLRREMA 79 (251)
T ss_dssp -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSC--HHHHHHHHH
T ss_pred CCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCCceeecccCC--HHHHHHHHH
Confidence 356789999999999999999999999999999999999999999876653 3568999999975 666667777
Q ss_pred HcCCChhhhhc--ceeEeecC---------------CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchH
Q 019381 180 RYGLNGADVLE--NVAYARAY---------------NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 242 (342)
Q Consensus 180 ~~~~~~~~~~~--~i~~~~~~---------------~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~ 242 (342)
+++.+.+.... ++.+.+.. .......++..+...+...+++++|+|+++.+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~------- 152 (251)
T 2zts_A 80 SFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE------- 152 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-------
T ss_pred HcCCChHHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhcc-------
Confidence 77766543321 22222111 1112234455666677778999999999998865321
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecC---CeEEEEEEe
Q 019381 243 ARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRG---EERICKVIS 319 (342)
Q Consensus 243 ~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~---~~r~~~v~K 319 (342)
+.+.+.+++..|+.+|+++|+++++++|+.+...+ ...+...+.+.+|.++.|++... ..|.+.|.|
T Consensus 153 -~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~---------~~~~~~~~~~~aD~vi~l~~~~~~~~~~R~l~I~K 222 (251)
T 2zts_A 153 -EERKIREVLLKLNTILLEMGVTTILTTEAPDPQHG---------KLSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRK 222 (251)
T ss_dssp -SGGGHHHHHHHHHHHHHHHCCEEEEEECCC----C---------CSSSSSCGGGGCSEEEEEEEEECSSSEEEEEEEEE
T ss_pred -ChHHHHHHHHHHHHHHHHcCCCeEEEEEEeccccc---------ccccCCceeEEeeEEEEEEEEecCCeEEEEEEEEE
Confidence 11235688899999999999999999999763332 12344568899999999987642 468999999
Q ss_pred CCCCCCe--eEEEEEecCCCCC
Q 019381 320 SPCLAEA--EARFQISAQGVAD 339 (342)
Q Consensus 320 ~r~~~~~--~~~f~I~~~Gi~~ 339 (342)
+|++|+. .++|+|+++||+-
T Consensus 223 ~R~~~~~~~~~~f~It~~Gi~v 244 (251)
T 2zts_A 223 MRETRHSMKKYPFEIGPNGIVV 244 (251)
T ss_dssp ETTCCCCCBEEEEEEETTEEEE
T ss_pred cCCCCCCCEEEEEEEeCCcEEE
Confidence 9998753 4789999999864
No 13
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.97 E-value=8e-30 Score=237.68 Aligned_cols=220 Identities=25% Similarity=0.412 Sum_probs=163.7
Q ss_pred ccccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
....+++||++.||.+|+ |||++|++++|+|+||+|||+||++++.+++. .+++|+||++|+++... ++
T Consensus 50 ~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~------~g~~vlyi~~E~s~~~~----~a 119 (366)
T 1xp8_A 50 LDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK------AGGTCAFIDAEHALDPV----YA 119 (366)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHH----HH
T ss_pred ccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH------CCCeEEEEECCCChhHH----HH
Confidence 356789999999999999 99999999999999999999999999988876 36789999999988764 35
Q ss_pred HHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc-cccCCC-cc--hHHHHHHHHHHHHH
Q 019381 179 DRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR-TDFSGR-GE--LSARQMHLAKFLRS 254 (342)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~-~~--~~~r~~~l~~i~~~ 254 (342)
++++.+.+ ++.+.++.+.++... .+..++...++++||||+++.++. .++.+. ++ ...+.+.+.++++.
T Consensus 120 ~~~g~d~~----~l~i~~~~~~e~~l~---~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~ 192 (366)
T 1xp8_A 120 RALGVNTD----ELLVSQPDNGEQALE---IMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRK 192 (366)
T ss_dssp HHTTCCGG----GCEEECCSSHHHHHH---HHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHH
T ss_pred HHcCCCHH----HceeecCCcHHHHHH---HHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHH
Confidence 67787755 556666666554443 344455557899999999999984 333211 11 01233567899999
Q ss_pred HHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeecC----------CeEEEEEEeCCCCC
Q 019381 255 LQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRG----------EERICKVISSPCLA 324 (342)
Q Consensus 255 Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~~----------~~r~~~v~K~r~~~ 324 (342)
|+.++++++++||++||+++..+. +| +++..|.+|..|.+.++.++.|++... ..|.++|.|+|++|
T Consensus 193 L~~~a~~~~~~VI~~nq~~~~~~~--~f-g~p~~~~gg~al~~~a~~rl~L~r~~~~~k~~~~~~g~~~~v~v~Knr~~p 269 (366)
T 1xp8_A 193 LTAILSKTGTAAIFINQVREKIGV--MY-GNPETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANTVKIKTVKNKVAA 269 (366)
T ss_dssp HHHHHTTTCCEEEEEEEC------------------CHHHHHHHCSEEEEEEEESCCC------CEEEEEEEEEEESSSC
T ss_pred HHHHHHHcCCEEEEEEecccccCc--cc-CCccccCCcchhhheeeEEEEEEecchhcccCccccCCEEEEEEEcCCCCC
Confidence 999999999999999999987654 45 566788999999999999999998752 46899999999988
Q ss_pred C-eeEEEEEe-cCCCCC
Q 019381 325 E-AEARFQIS-AQGVAD 339 (342)
Q Consensus 325 ~-~~~~f~I~-~~Gi~~ 339 (342)
. +.+.|+|. ..||..
T Consensus 270 ~~~~~~f~i~~~~Gi~~ 286 (366)
T 1xp8_A 270 PFKEVELALVYGKGFDQ 286 (366)
T ss_dssp CCCEEEEEEETTTEECH
T ss_pred CCceEEEEEEeCCCccc
Confidence 4 66899998 688764
No 14
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.97 E-value=1.6e-29 Score=234.86 Aligned_cols=220 Identities=25% Similarity=0.421 Sum_probs=165.8
Q ss_pred ccccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
....+++||++.||.+|+ ||+++|++++|+|+||+||||||++++..++. .+++|+|+++|+++... ++
T Consensus 37 ~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~------~g~~vlyi~~E~~~~~~----~a 106 (349)
T 2zr9_A 37 QPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA------AGGIAAFIDAEHALDPE----YA 106 (349)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHH----HH
T ss_pred ccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECCCCcCHH----HH
Confidence 346789999999999999 99999999999999999999999999988876 36789999999988764 46
Q ss_pred HHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc-cccCCC-cch--HHHHHHHHHHHHH
Q 019381 179 DRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR-TDFSGR-GEL--SARQMHLAKFLRS 254 (342)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~-~~~--~~r~~~l~~i~~~ 254 (342)
++++.+.+ ++.+.++.+.++... .+..++...++++|||||++.++. .++.+. ++. ..+.+.+.++++.
T Consensus 107 ~~lG~~~~----~l~i~~~~~~e~~l~---~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~ 179 (349)
T 2zr9_A 107 KKLGVDTD----SLLVSQPDTGEQALE---IADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRK 179 (349)
T ss_dssp HHTTCCGG----GCEEECCSSHHHHHH---HHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHH
T ss_pred HHcCCCHH----HeEEecCCCHHHHHH---HHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHH
Confidence 67887765 455666666554433 344455567799999999999974 332211 111 0223357888899
Q ss_pred HHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---------CCeEEEEEEeCCCCC-
Q 019381 255 LQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLA- 324 (342)
Q Consensus 255 Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---------~~~r~~~v~K~r~~~- 324 (342)
|+.++++++++||++||+++..+. +| +++..|.+|..|.|.++.++.+++.+ +..|.++|.|+|..|
T Consensus 180 L~~~a~~~~~tVI~inh~~~~~~~--~~-~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~~~~g~~~~~~i~K~~~~p~ 256 (349)
T 2zr9_A 180 MTGALNNSGTTAIFINELREKIGV--MF-GSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPP 256 (349)
T ss_dssp HHHHHHHHTCEEEEEEECC--------------CCSSHHHHHHHCSEEEEEEEEEEECSSSSCCEEEEEEEEEEESSSCC
T ss_pred HHHHHHHhCCEEEEEeccccccCc--cc-CCCcccCCchHhhhccceEEEEEEeeeeecCccccCCEEEEEeCCCccCCC
Confidence 999999999999999999986653 45 45678899999999999999999862 246899999999987
Q ss_pred CeeEEEEEe-cCCCCC
Q 019381 325 EAEARFQIS-AQGVAD 339 (342)
Q Consensus 325 ~~~~~f~I~-~~Gi~~ 339 (342)
.+.+.|+|. .+||..
T Consensus 257 ~~~~~fdi~~~~Gi~~ 272 (349)
T 2zr9_A 257 FKQAEFDILYGQGISR 272 (349)
T ss_dssp CCEEEEEEETTSCBCH
T ss_pred CceEEEEEEeCCCcCc
Confidence 567899995 789864
No 15
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.96 E-value=2.1e-29 Score=271.32 Aligned_cols=264 Identities=25% Similarity=0.381 Sum_probs=193.1
Q ss_pred HHhhcCChHHHHHHhC----CCHHHHHHHHHHHhhhccCCCCcHHH--HHh-hhccccccccCChhhHhhhc-CCCCCCc
Q 019381 53 ESVAYSPRKELLQIKG----ISEAKVDKIIEAASKLVPLGFTSATQ--LHA-QRLEIIQITSGSRELDKILE-GGVETGS 124 (342)
Q Consensus 53 ~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~i~tg~~~LD~~l~-GGi~~G~ 124 (342)
..+...++.+|++.++ ++.+ ..+++..+.+.+..+|.++.. +.+ ......+++||++.||++++ ||+++|+
T Consensus 655 ~a~~~~~ps~L~e~~~~~~~v~~~-~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~ 733 (2050)
T 3cmu_A 655 PNSTTGSTGSMGHTTGAMSAIDEN-KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 733 (2050)
T ss_dssp CCC----------------CCSTT-HHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTS
T ss_pred hhcccCCHHHHHhhhccccCCcHH-HHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCc
Confidence 4555667777777776 6654 334444444443323322211 111 12456789999999999998 7999999
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQS 204 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (342)
+++|+|+||+|||+||+++|.+++. .+++|+|||+|+++.+.. +++++++. +++++.+..+..++.
T Consensus 734 lilIaG~PG~GKTtLalqlA~~~a~------~g~~VlyiS~Ees~~ql~----A~rlG~~~----~~l~i~~~~~i~~i~ 799 (2050)
T 3cmu_A 734 IVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIY----ARKLGVDI----DNLLCSQPDTGEQAL 799 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTTSCCCHHH----HHHTTCCT----TTCEEECCSSHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEECCCcHHHHH----HHHcCCCc----cceEEecCCCHHHHH
Confidence 9999999999999999999998886 356899999999988753 56778765 367777666666555
Q ss_pred HHHHHHHHHhHhcCceEEEEeccccccc-cccCCC-c----chHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCC
Q 019381 205 RLLLEAASMMVETRFALMIVDSATALYR-TDFSGR-G----ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDG 278 (342)
Q Consensus 205 ~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~-~----~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~ 278 (342)
..+. .+....++++|||||++.++. .++.+. + +...| .+.++++.|+.+|++++|+||+++|+++.++.
T Consensus 800 ~~~r---~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~R--eis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e~ 874 (2050)
T 3cmu_A 800 EICD---ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR--MMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 874 (2050)
T ss_dssp HHHH---HHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHH--HHHHHHHHHHHHHHTTTCEEEEEECCEECTTC
T ss_pred HHHH---HHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHH--HHHHHHHHHHHHHHHhCCEEEEeccccccchh
Confidence 4443 444457899999999999986 332211 1 23344 48899999999999999999999999998876
Q ss_pred CcccCCCCccccCccccccccceEEEEEee----cC------CeEEEEEEeCCCCCCeeEEEEE-ecCCCCC
Q 019381 279 SAIFAGPQIKPIGGNIMAHASTTRLALRKG----RG------EERICKVISSPCLAEAEARFQI-SAQGVAD 339 (342)
Q Consensus 279 ~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~----~~------~~r~~~v~K~r~~~~~~~~f~I-~~~Gi~~ 339 (342)
+| +++..|+||..|.|.+++|++|+|. ++ +.|+++|.+++..|..++.|.| +++||.+
T Consensus 875 --~f-gdp~~p~GG~~l~h~a~~Rl~Lrr~~~~~~g~~~~G~~~Rv~~v~~sp~lp~~e~~f~I~~~~Gi~~ 943 (2050)
T 3cmu_A 875 --MF-GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINF 943 (2050)
T ss_dssp --CS-SCCEECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEECH
T ss_pred --hc-CCCccccCCceeeeeeeEEEEEEeeccccccccccCCcceEEEEecCCCCCCceEEEEEEcCCCccc
Confidence 67 6889999999999999999999986 44 5799999999999999999999 8899874
No 16
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.96 E-value=6.5e-28 Score=221.54 Aligned_cols=211 Identities=14% Similarity=0.116 Sum_probs=155.1
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH--
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA-- 178 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~-- 178 (342)
...+++||++.||.++ ||+++|++++|+|+||+|||+|++++|.+++. .+.+|+||++|++ ...+...+
T Consensus 47 ~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~------~g~~vl~~slE~s--~~~l~~R~~~ 117 (315)
T 3bh0_A 47 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD------NDDVVNLHSLEMG--KKENIKRLIV 117 (315)
T ss_dssp SCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT------TTCEEEEEESSSC--HHHHHHHHHH
T ss_pred CCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEECCCC--HHHHHHHHHH
Confidence 3568999999999999 69999999999999999999999999988876 3578999999976 43333322
Q ss_pred HHcCCChhhhh-----------------------cceeEeecCCHHHHHHHHHHHHHHhHhcCce--EEEEecccccccc
Q 019381 179 DRYGLNGADVL-----------------------ENVAYARAYNTDHQSRLLLEAASMMVETRFA--LMIVDSATALYRT 233 (342)
Q Consensus 179 ~~~~~~~~~~~-----------------------~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~--lvviD~l~~l~~~ 233 (342)
...+++...+. .++++.+.. .....++...+..+...++++ +||||+++.+...
T Consensus 118 ~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~-~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~ 196 (315)
T 3bh0_A 118 TAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKA-GQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPA 196 (315)
T ss_dssp HHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCS-CCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCS
T ss_pred HHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCC-CCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCC
Confidence 22344322111 133333332 223445555556666667888 9999999998642
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccc-----cCccccccccceEEEEEee
Q 019381 234 DFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKP-----IGGNIMAHASTTRLALRKG 308 (342)
Q Consensus 234 ~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p-----~~g~~~~~~~d~~l~l~~~ 308 (342)
.. ...|...+.++++.|+.+|++++|+||+++|+++..+.. ....| .++..+++.+|.+++|++.
T Consensus 197 ~~-----~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r-----~~~~p~l~dlr~sg~ie~~aD~vi~L~r~ 266 (315)
T 3bh0_A 197 KA-----NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQR-----QDKRPMLSDLRESGQLEQDADIIEFLYRD 266 (315)
T ss_dssp CT-----TSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTS-----SSCCCCGGGGTTTSHHHHHCSEEEEEEEH
T ss_pred CC-----CCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccC-----CCCCCCHHHhhhhhhhHhhCCEEEEEecc
Confidence 11 134556788999999999999999999999999866542 12333 3345688999999999986
Q ss_pred c--------CCeEEEEEEeCCCCCCeeEEEE
Q 019381 309 R--------GEERICKVISSPCLAEAEARFQ 331 (342)
Q Consensus 309 ~--------~~~r~~~v~K~r~~~~~~~~f~ 331 (342)
+ ...+.+.|.|+|+++++.+.+.
T Consensus 267 ~~~~~~~~~~~~~~l~v~K~R~G~~g~~~l~ 297 (315)
T 3bh0_A 267 DYYDKESESKNIVEVIIAKHRDGPVGTVSLA 297 (315)
T ss_dssp HHHCTTCTTTTEEEEEEEEETTSCCEEEEEE
T ss_pred cccCccccCCCcEEEEEECCcCCCCceEEEE
Confidence 3 2468999999999999876444
No 17
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.96 E-value=2e-28 Score=225.17 Aligned_cols=214 Identities=18% Similarity=0.222 Sum_probs=157.6
Q ss_pred ccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~ 179 (342)
....+++||++.||.+++ |+++|++++|+|+||+|||+|++++|.+++. .+.+|+||+.|++......+.++.
T Consensus 24 ~~~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~------~g~~Vl~fSlEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 24 LEVTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALN------DDRGVAVFSLEMSAEQLALRALSD 96 (338)
T ss_dssp TCCCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHH------TTCEEEEEESSSCHHHHHHHHHHH
T ss_pred CCcCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCCCCHHHHHHHHHHH
Confidence 356789999999999996 9999999999999999999999999998886 467899999998743333233333
Q ss_pred HcCCChhhh--------------------h-cceeEeecCCHHHHHHHHHHHHHHhHhc-CceEEEEeccccccccccCC
Q 019381 180 RYGLNGADV--------------------L-ENVAYARAYNTDHQSRLLLEAASMMVET-RFALMIVDSATALYRTDFSG 237 (342)
Q Consensus 180 ~~~~~~~~~--------------------~-~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~~~~~~~ 237 (342)
..+++...+ . .++++. ......+.++...+..+...+ ++++||||+++.+.....
T Consensus 97 ~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~-d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~-- 173 (338)
T 4a1f_A 97 LTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFY-DKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKA-- 173 (338)
T ss_dssp HHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEE-CCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHH--
T ss_pred hhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEe-CCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCC--
Confidence 233332211 1 124333 333334455556666666667 899999999998864311
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccc-----cCccccccccceEEEEEeec---
Q 019381 238 RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKP-----IGGNIMAHASTTRLALRKGR--- 309 (342)
Q Consensus 238 ~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p-----~~g~~~~~~~d~~l~l~~~~--- 309 (342)
...|...+.++++.||.+|++++|+||+++|+++..+.+ ..++| .++..+++.+|.+++|+|++
T Consensus 174 ---~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r-----~dkrP~lsDLreSg~IeqdAD~Vl~l~R~~~y~ 245 (338)
T 4a1f_A 174 ---TKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENR-----DDKRPILSDIKDSGGIEQDADIVLFLYRGYIYQ 245 (338)
T ss_dssp ---HHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGS-----SSCSCCGGGSEETTEECCCCSEEEEEECHHHHH
T ss_pred ---CCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCcccccc-----ccCCCChHhcccchhhhhhCcEEEEEecchhcc
Confidence 134556688999999999999999999999999977652 23445 34557899999999999852
Q ss_pred --------------C-------------------------CeEEEEEEeCCCCCCeeEEEE
Q 019381 310 --------------G-------------------------EERICKVISSPCLAEAEARFQ 331 (342)
Q Consensus 310 --------------~-------------------------~~r~~~v~K~r~~~~~~~~f~ 331 (342)
. ....+.|.|+|++|.+.+.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~g~v~l~ 306 (338)
T 4a1f_A 246 MRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATGTVYTR 306 (338)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCCEEEEEE
T ss_pred cccccccccccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCCceEEEE
Confidence 1 135789999999999986543
No 18
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.95 E-value=4e-27 Score=226.21 Aligned_cols=218 Identities=17% Similarity=0.204 Sum_probs=155.8
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
..+++||++.||.++ ||+++|++++|+|+||+|||+|++++|.+++.. .+.+|+||++|++......+.++...
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-----~g~~vl~~slE~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-----EGVGVGIYSLEMPAAQLTLRMMCSEA 253 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-----TCCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEECCCCHHHHHHHHHHHHc
Confidence 468999999999999 699999999999999999999999999988763 25689999999873332222233444
Q ss_pred CCChhhhh---------------------cceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcc
Q 019381 182 GLNGADVL---------------------ENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240 (342)
Q Consensus 182 ~~~~~~~~---------------------~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~ 240 (342)
+++.+.+. .++.+. ........++...+..+...+++++||||+++.+.... .+. .
T Consensus 254 ~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~-d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~-~~~-~ 330 (444)
T 2q6t_A 254 RIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYID-DTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPG-SGK-S 330 (444)
T ss_dssp TCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEE-CCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------
T ss_pred CCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCc-CCC-C
Confidence 44332110 123333 33222344555566666667889999999999986431 000 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCc-----cccccccceEEEEEeecC-----
Q 019381 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGG-----NIMAHASTTRLALRKGRG----- 310 (342)
Q Consensus 241 ~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g-----~~~~~~~d~~l~l~~~~~----- 310 (342)
...|.+.+.++++.|+.+|++++++||+++|+++..+.. ..++|.++ ..+++.+|.+++|++.+.
T Consensus 331 ~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r-----~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~~~ 405 (444)
T 2q6t_A 331 GENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEAR-----PNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHS 405 (444)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSS-----SSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC-----CCCCCChHHhcchhHHHHhCCEEEEEecccccCCcC
Confidence 134667789999999999999999999999999866542 23445543 468999999999998641
Q ss_pred ---CeEEEEEEeCCCCCCeeEEEEEe
Q 019381 311 ---EERICKVISSPCLAEAEARFQIS 333 (342)
Q Consensus 311 ---~~r~~~v~K~r~~~~~~~~f~I~ 333 (342)
..+.+.|.|+|++|.+.+.+...
T Consensus 406 ~~~~~~~l~i~K~R~g~~g~~~l~f~ 431 (444)
T 2q6t_A 406 EKAGIAEIIVGKQRNGPTGTVELQFH 431 (444)
T ss_dssp SCCSEEEEEEEECSSSCCEEEEEEEE
T ss_pred CCCCeEEEEEEecCCCCceEEEEEEE
Confidence 46899999999999987655443
No 19
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.95 E-value=2.9e-27 Score=209.19 Aligned_cols=209 Identities=18% Similarity=0.261 Sum_probs=155.2
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcC
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYG 182 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~ 182 (342)
.+++||++.||++++||+++|++++|+|+||+|||||+.+++...+. .+++|+|+++|.+ ...+.+.+..++
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~------~~~~v~~~~~e~~--~~~~~~~~~~~g 74 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK------MGEPGIYVALEEH--PVQVRQNMAQFG 74 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH------TTCCEEEEESSSC--HHHHHHHHHTTT
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEccCC--HHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999887765 3678999999975 556666667777
Q ss_pred CChhhhh--cceeEeecC----------------CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHH
Q 019381 183 LNGADVL--ENVAYARAY----------------NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSAR 244 (342)
Q Consensus 183 ~~~~~~~--~~i~~~~~~----------------~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r 244 (342)
.+.+... .++.+.+.. .......++..+...+...++++||||+++.+...+ ..+
T Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~------~~~- 147 (247)
T 2dr3_A 75 WDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINK------PAM- 147 (247)
T ss_dssp CCCHHHHHHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTC------GGG-
T ss_pred CCHHHHhhCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCC------HHH-
Confidence 7765432 244443310 112333445556666666789999999999986321 111
Q ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec--C-CeEEEEEEeCC
Q 019381 245 QMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--G-EERICKVISSP 321 (342)
Q Consensus 245 ~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--~-~~r~~~v~K~r 321 (342)
..+++..|.++++++|++||+++|.++.... ..+..|.+.+|.++.|++.. + ..|.++|.|+|
T Consensus 148 ---~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~-----------~~~~~~~~~~D~vi~L~~~~~~~~~~r~l~v~K~R 213 (247)
T 2dr3_A 148 ---ARSIILQLKRVLAGTGCTSIFVSQVSVGERG-----------FGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMR 213 (247)
T ss_dssp ---HHHHHHHHHHHHHHTTCEEEEEEECC----C-----------CC-CCHHHHSSEEEEEEEEEETTEEEEEEEEEEET
T ss_pred ---HHHHHHHHHHHHHHCCCeEEEEecCCCCccc-----------ccccccceeEEEEEEEEEEccCCeeEEEEEEEECC
Confidence 2366777888889999999999999873211 12235889999999999863 2 46999999999
Q ss_pred CCCCe--eEEEEEecCCCCCC
Q 019381 322 CLAEA--EARFQISAQGVADV 340 (342)
Q Consensus 322 ~~~~~--~~~f~I~~~Gi~~~ 340 (342)
++++. .++|+|+++||..+
T Consensus 214 ~~~~~~~~~~f~i~~~Gi~~~ 234 (247)
T 2dr3_A 214 GTSHSMRRHPFDITDKGIIVY 234 (247)
T ss_dssp TSCCCCBCEEEEEETTEEEEC
T ss_pred CCCCCCceEEEEEcCCCEEEe
Confidence 98764 47999999999764
No 20
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.95 E-value=3e-27 Score=226.28 Aligned_cols=215 Identities=14% Similarity=0.110 Sum_probs=160.3
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||++++ |+++|++++|+|+||+|||+|++++|.+++. .+.+|+||++|++......+.++..
T Consensus 176 ~~~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~------~g~~vl~fSlEms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 176 NITGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSD------NDDVVNLHSLEMGKKENIKRLIVTA 248 (444)
T ss_dssp SCCSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHH------TTCEEEEECSSSCTTHHHHHHHHHH
T ss_pred CCCCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHH------cCCEEEEEECCCCHHHHHHHHHHHH
Confidence 45789999999999995 9999999999999999999999999999887 3678999999998665444444444
Q ss_pred cCCChhhhh-----------------------cceeEeecCCHHHHHHHHHHHHHHhHhcCce--EEEEecccccccccc
Q 019381 181 YGLNGADVL-----------------------ENVAYARAYNTDHQSRLLLEAASMMVETRFA--LMIVDSATALYRTDF 235 (342)
Q Consensus 181 ~~~~~~~~~-----------------------~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~--lvviD~l~~l~~~~~ 235 (342)
.+++...+. .++++.+. ......++...+......++++ +||||+++.+.....
T Consensus 249 ~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~-~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~ 327 (444)
T 3bgw_A 249 GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDK-AGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKA 327 (444)
T ss_dssp SCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECC-SSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCS
T ss_pred cCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECC-CCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCC
Confidence 444422110 12333332 2234445555666666678899 999999999864321
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccC-----ccccccccceEEEEEeecC
Q 019381 236 SGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIG-----GNIMAHASTTRLALRKGRG 310 (342)
Q Consensus 236 ~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~-----g~~~~~~~d~~l~l~~~~~ 310 (342)
...|.+.+.++++.|+.+|+++||+||+++|+++..+.. ..++|.+ +..+++.+|.+++|++.+.
T Consensus 328 -----~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r-----~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~ 397 (444)
T 3bgw_A 328 -----NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQR-----QDKRPMLSDLRESGQLEQDADIIEFLYRDDY 397 (444)
T ss_dssp -----SSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGS-----SCCCCCGGGCCSCSHHHHHCSEEEECCBGGG
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccc-----CCCCCchhhhhhhhhHHhhCCEEEEEecccc
Confidence 134556789999999999999999999999999866542 2234433 3468999999999998641
Q ss_pred --------CeEEEEEEeCCCCCCeeEEEEEe
Q 019381 311 --------EERICKVISSPCLAEAEARFQIS 333 (342)
Q Consensus 311 --------~~r~~~v~K~r~~~~~~~~f~I~ 333 (342)
..+.+.|.|+|++|.+.+.+...
T Consensus 398 ~~~~~~~~~~~~l~i~K~R~G~~g~v~l~f~ 428 (444)
T 3bgw_A 398 YDKESESKNIVEVIIAKHRDGPVGTVSLAFI 428 (444)
T ss_dssp TCTTCSSTTEEEEEEEEESSSCCEEEEEEEE
T ss_pred ccccccCCCeEEEEEEcccCCCCeEEEEEEE
Confidence 36899999999999987655443
No 21
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.95 E-value=3.8e-26 Score=220.02 Aligned_cols=213 Identities=15% Similarity=0.182 Sum_probs=153.9
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHH--HH
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI--AD 179 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~--~~ 179 (342)
..+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++.. .+.+|+||+.|++. ..+... +.
T Consensus 183 ~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-----~g~~Vl~~s~E~s~--~~l~~r~~~~ 254 (454)
T 2r6a_A 183 ITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATK-----TNENVAIFSLEMSA--QQLVMRMLCA 254 (454)
T ss_dssp CCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH-----SSCCEEEEESSSCH--HHHHHHHHHH
T ss_pred CCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEECCCCH--HHHHHHHHHH
Confidence 468999999999999 599999999999999999999999999888752 24589999999863 333332 33
Q ss_pred HcCCChhhhh---------------------cceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCC
Q 019381 180 RYGLNGADVL---------------------ENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGR 238 (342)
Q Consensus 180 ~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~ 238 (342)
..+++.+.+. .++.+.+ .......++...+..++..+++++||||+++.+......
T Consensus 255 ~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~-- 331 (454)
T 2r6a_A 255 EGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDD-TPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRS-- 331 (454)
T ss_dssp HHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEEC-CTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC---
T ss_pred HcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCC--
Confidence 4455433221 1233332 222233344455556666678999999999998753211
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccC-----ccccccccceEEEEEeecC---
Q 019381 239 GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIG-----GNIMAHASTTRLALRKGRG--- 310 (342)
Q Consensus 239 ~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~-----g~~~~~~~d~~l~l~~~~~--- 310 (342)
...+.+.+.++++.|+.+|++++++||+++|+++..+.. ..++|.+ +..+.+.+|.+++|++.+.
T Consensus 332 --~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~-----~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~~~ 404 (454)
T 2r6a_A 332 --KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR-----QDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNK 404 (454)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--------CCCTHHHHTTCSHHHHCSEEEEEEETTC---
T ss_pred --CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC-----CCCCCcHHHhhccchhHhhCCEEEEEecccccCc
Confidence 123556788999999999999999999999999866542 1234543 4478899999999998642
Q ss_pred -----CeEEEEEEeCCCCCCeeEEEEE
Q 019381 311 -----EERICKVISSPCLAEAEARFQI 332 (342)
Q Consensus 311 -----~~r~~~v~K~r~~~~~~~~f~I 332 (342)
..+.+.|.|+|++|.+.+.+..
T Consensus 405 ~~~~~~~~~l~i~K~R~G~~g~v~l~f 431 (454)
T 2r6a_A 405 DSENKNIIEIIIAKQRNGPVGTVQLAF 431 (454)
T ss_dssp ----CCEEEEEEEEESSSCCEEEEEEE
T ss_pred ccCCCCeEEEEEecccCCCCeEEEEEE
Confidence 4689999999999998764443
No 22
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.95 E-value=2.1e-26 Score=224.73 Aligned_cols=214 Identities=13% Similarity=0.124 Sum_probs=155.0
Q ss_pred cccccccc-CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHH--
Q 019381 100 LEIIQITS-GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQ-- 176 (342)
Q Consensus 100 ~~~~~i~t-g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~-- 176 (342)
....+++| |++.||++++ |+++|++++|+|+||+|||+|++++|.+++.. .+.+|+||++|++ ..++..
T Consensus 219 ~~~~~i~t~G~~~LD~~lg-Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-----~g~~vl~~s~E~s--~~~l~~r~ 290 (503)
T 1q57_A 219 EESVGLLFSGCTGINDKTL-GARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-----MGKKVGLAMLEES--VEETAEDL 290 (503)
T ss_dssp SCTTCSCCSSCTTHHHHHC-CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-----SCCCEEEEESSSC--HHHHHHHH
T ss_pred cccCCccccchhhhhHhhc-ccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-----cCCcEEEEeccCC--HHHHHHHH
Confidence 35678999 9999999995 99999999999999999999999999988863 2578999999986 333332
Q ss_pred HHHHcCCChhh--------------------h--hcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccc
Q 019381 177 IADRYGLNGAD--------------------V--LENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTD 234 (342)
Q Consensus 177 ~~~~~~~~~~~--------------------~--~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~ 234 (342)
++...+.+... + ..++.+.+......+.+++..+...+..+++++||||+++.+....
T Consensus 291 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~ 370 (503)
T 1q57_A 291 IGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS 370 (503)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCC
T ss_pred HHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCC
Confidence 23444443211 0 1234454443334555666666677777899999999999875421
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccc-----cCccccccccceEEEEEeec
Q 019381 235 FSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKP-----IGGNIMAHASTTRLALRKGR 309 (342)
Q Consensus 235 ~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p-----~~g~~~~~~~d~~l~l~~~~ 309 (342)
. ...+.+.+.++++.|+.+|++++++||+++|+++ .++.... .....| .++..+++.+|.++.|++.+
T Consensus 371 ---~--~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~-~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~ 443 (503)
T 1q57_A 371 ---G--ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAH-EEGRPVSITDLRGSGALRQLSDTIIALERNQ 443 (503)
T ss_dssp ---S--CCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCS-TTCCCCCSSSCSSSSHHHHHCSEEEEEEECS
T ss_pred ---C--CCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCcc-ccCCCCChhhhccchHhhecCcEEEEEEeCC
Confidence 1 1234566889999999999999999999999998 3321000 011222 34567899999999999875
Q ss_pred C----CeEEEEEEeCC-CCCCeeE
Q 019381 310 G----EERICKVISSP-CLAEAEA 328 (342)
Q Consensus 310 ~----~~r~~~v~K~r-~~~~~~~ 328 (342)
. ..|.+.|.|+| +++.+.+
T Consensus 444 ~~~~~~~~~l~v~K~R~~G~~g~~ 467 (503)
T 1q57_A 444 QGDMPNLVLVRILKCRFTGDTGIA 467 (503)
T ss_dssp SSSCTTEEEEEEEEETTTCCCEEE
T ss_pred cCCCCCeEEEEEEeccCCCCCCce
Confidence 3 47899999999 6998875
No 23
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.95 E-value=2e-26 Score=246.26 Aligned_cols=220 Identities=26% Similarity=0.400 Sum_probs=175.4
Q ss_pred ccccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
....+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++. .+.+|+|||+|+++... ++
T Consensus 359 ~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~------~G~~vlyis~E~s~~~~----~a 428 (1706)
T 3cmw_A 359 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPI----YA 428 (1706)
T ss_dssp GSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECTTSCCCHH----HH
T ss_pred ccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------hCCCeEEEEccCchHHH----HH
Confidence 346789999999999999 99999999999999999999999999998886 46789999999998874 36
Q ss_pred HHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc-cccCCC-c--chHHHHHHHHHHHHH
Q 019381 179 DRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR-TDFSGR-G--ELSARQMHLAKFLRS 254 (342)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~-~--~~~~r~~~l~~i~~~ 254 (342)
+.++++.+ ++.+.++.+.+++. ..+...+...++++|||||++.++. .+..+. + ....+.+.+..+++.
T Consensus 429 ~~lGvd~~----~L~i~~~~~~e~~l---~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~ 501 (1706)
T 3cmw_A 429 RKLGVDID----NLLCSQPDTGEQAL---EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 501 (1706)
T ss_dssp HHTTCCGG----GCEEECCSSHHHHH---HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHH
T ss_pred HHcCCCHH----HeEEcCCCCHHHHH---HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHH
Confidence 77888765 45666666655444 3444555668899999999999985 222111 1 112344568899999
Q ss_pred HHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---------CCeEEEEEEeCCCCCC
Q 019381 255 LQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE 325 (342)
Q Consensus 255 Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---------~~~r~~~v~K~r~~~~ 325 (342)
|+.++++++++||++||+++..+. +| +.+..|++|..|.+.+|.++.+++.+ +..|.++|.|+|++|.
T Consensus 502 L~~~ak~~~v~VI~inQl~~~vg~--~f-g~~~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~~~~~~~l~V~KnR~gp~ 578 (1706)
T 3cmw_A 502 LAGNLKQSNTLLIFINQIRMKIGV--MF-GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAP 578 (1706)
T ss_dssp HHHHHHHHTCEEEEEECEEECTTC--CS-SCCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCS
T ss_pred HHHHHHHcCCEEEEEeeccccccc--cc-CCCccCCCCcceeeeCCEEEEEEeccccccCccccCcEEEEEEEecCCCCC
Confidence 999999999999999999997664 45 56678999999999999999999863 2357899999999887
Q ss_pred ee-EEEEEe-cCCCCC
Q 019381 326 AE-ARFQIS-AQGVAD 339 (342)
Q Consensus 326 ~~-~~f~I~-~~Gi~~ 339 (342)
.. +.|+|. +.||..
T Consensus 579 ~~~~~F~I~~~~Gi~~ 594 (1706)
T 3cmw_A 579 FKQAEFQILYGEGINF 594 (1706)
T ss_dssp CCEEEEEEETTTEECH
T ss_pred CCeEEEEEecCCCccc
Confidence 54 789974 577763
No 24
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.94 E-value=4.2e-26 Score=243.82 Aligned_cols=219 Identities=26% Similarity=0.405 Sum_probs=175.0
Q ss_pred cccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~ 179 (342)
...+++||++.||++++ ||+++|++++|+|+||+|||+|++++|.+++. .+++|+||++|+++.+. +++
T Consensus 709 ~~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~------~g~~VlyiS~Ees~~ql----~A~ 778 (1706)
T 3cmw_A 709 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPI----YAR 778 (1706)
T ss_dssp SCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECTTSCCCHH----HHH
T ss_pred cccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHH------cCCCeEEEeccchHHHH----HHH
Confidence 46789999999999999 99999999999999999999999999998876 46689999999987764 267
Q ss_pred HcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc-cccCC-Ccc--hHHHHHHHHHHHHHH
Q 019381 180 RYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR-TDFSG-RGE--LSARQMHLAKFLRSL 255 (342)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~-~~~--~~~r~~~l~~i~~~L 255 (342)
+++.+.+ ++.+.++.+..+ ++..+...+...++++|||||++.+.. .+..+ .++ +..+.+.+.++++.|
T Consensus 779 ~lGvd~~----~L~i~~~~~lee---i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~L 851 (1706)
T 3cmw_A 779 KLGVDID----NLLCSQPDTGEQ---ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 851 (1706)
T ss_dssp HTTCCGG----GCEEECCSSHHH---HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHH
T ss_pred HcCCChh----heEEecCCcHHH---HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHH
Confidence 7888765 566777666554 444455556668899999999999973 22211 111 112344688889999
Q ss_pred HHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec---------CCeEEEEEEeCCCCCCe
Q 019381 256 QKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAEA 326 (342)
Q Consensus 256 k~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~---------~~~r~~~v~K~r~~~~~ 326 (342)
+.++++++++||+++|+++.++. +| +++..|.++..|.|.+|++++|+|.+ +..|.++|.|+|++|++
T Consensus 852 k~lAke~gi~VIlinql~r~~g~--~~-Gdp~~p~gs~~Leq~ADvvl~L~R~~~~~~g~~~~g~~r~l~V~KnR~gp~~ 928 (1706)
T 3cmw_A 852 AGNLKQSNTLLIFINQIRMKIGV--MF-GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPF 928 (1706)
T ss_dssp HHHHHHHTCEEEEEECEEECTTC--CS-SCCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSC
T ss_pred HHHHHHcCCEEEEEecCCCcccc--cc-CCccccCCcchhhheeeEEEEEEecccccccccccCcEEEEEEEecCCCCCC
Confidence 99999999999999999997764 45 46678899999999999999998753 23789999999999875
Q ss_pred e-EEEEE-ecCCCCC
Q 019381 327 E-ARFQI-SAQGVAD 339 (342)
Q Consensus 327 ~-~~f~I-~~~Gi~~ 339 (342)
. +.|+| ...||..
T Consensus 929 ~~~~F~I~~~~Gi~~ 943 (1706)
T 3cmw_A 929 KQAEFQILYGEGINF 943 (1706)
T ss_dssp CEEEEEEETTTEECH
T ss_pred ceEEEEEEcCCCccc
Confidence 5 79999 6778753
No 25
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.94 E-value=3.3e-26 Score=246.78 Aligned_cols=219 Identities=26% Similarity=0.400 Sum_probs=174.3
Q ss_pred cccccccCChhhHhhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILE-GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~-GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~ 179 (342)
...+++||++.||.+|+ |||++|++++|+|+||+|||+||++++.+++. .+.+|+|||+|+++.+.+ ++
T Consensus 360 ~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~------~G~~vlyis~E~s~~~~~----a~ 429 (2050)
T 3cmu_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIY----AR 429 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTTSCCCHHH----HH
T ss_pred CCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEEcCCCHHHHH----HH
Confidence 46789999999999999 99999999999999999999999999998886 467899999999988743 67
Q ss_pred HcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc-cccCCC-cc--hHHHHHHHHHHHHHH
Q 019381 180 RYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR-TDFSGR-GE--LSARQMHLAKFLRSL 255 (342)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~-~~~~~~-~~--~~~r~~~l~~i~~~L 255 (342)
+++.+.+ ++.+.++.+..++. ..+..++...++++|||||++.++. .+..+. ++ ...+.+.+..+++.|
T Consensus 430 ~lGvd~~----~L~I~~~~~~e~il---~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L 502 (2050)
T 3cmu_A 430 KLGVDID----NLLCSQPDTGEQAL---EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 502 (2050)
T ss_dssp HTTCCTT----TCEEECCSSHHHHH---HHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHH
T ss_pred HcCCCHH----HeEEeCCCCHHHHH---HHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHH
Confidence 7887754 56677776665444 4444555668899999999999984 332111 11 112334678888899
Q ss_pred HHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec----C-----CeEEEEEEeCCCCCCe
Q 019381 256 QKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR----G-----EERICKVISSPCLAEA 326 (342)
Q Consensus 256 k~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~----~-----~~r~~~v~K~r~~~~~ 326 (342)
+.++++++++||++||+++.++. +| +++..|+||..|.|.+|+++.|+|.+ + ..+.++|.|+|++|++
T Consensus 503 ~~lake~~i~VIlinQl~~~vg~--~~-g~p~~psGg~ale~~ADv~l~L~R~~~~~~g~~~~g~~~~v~V~KnR~gp~g 579 (2050)
T 3cmu_A 503 AGNLKQSNTLLIFINQIRMKIGV--MF-GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPF 579 (2050)
T ss_dssp HHHHHTTTCEEEEEECCEECTTC--CS-SCCEECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSC
T ss_pred HHHHHHcCCeEEEEeeccccccc--cc-CCCcCCCCcchhhhhCCEEEEEEecccccCCccccCcEEEEEEEecCCCCCC
Confidence 99999999999999999997664 45 46678999999999999999999863 2 3567999999999875
Q ss_pred e-EEEEEe-cCCCCC
Q 019381 327 E-ARFQIS-AQGVAD 339 (342)
Q Consensus 327 ~-~~f~I~-~~Gi~~ 339 (342)
. +.|+|. ..||..
T Consensus 580 ~~~~f~I~~~~Gi~~ 594 (2050)
T 3cmu_A 580 KQAEFQILYGEGINF 594 (2050)
T ss_dssp CEEEEEEETTTEECH
T ss_pred ceEEEEEEeCCCccc
Confidence 4 799984 577764
No 26
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.93 E-value=1.8e-24 Score=189.30 Aligned_cols=208 Identities=15% Similarity=0.250 Sum_probs=147.1
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcC
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYG 182 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~ 182 (342)
.+++||++.||.+++||+++|++++|+|+||+|||||+.+++...+. .+++|+|++.+.. ...+...+..++
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~------~~~~v~~~~~~~~--~~~~~~~~~~~~ 74 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR------DGDPCIYVTTEES--RDSIIRQAKQFN 74 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH------HTCCEEEEESSSC--HHHHHHHHHHTT
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH------CCCeEEEEEcccC--HHHHHHHHHHhc
Confidence 36899999999999989999999999999999999999999866653 3568999999874 555555555677
Q ss_pred CChhhhhc-ceeEeecCC----------HHHHHHHHHHHHHHhHhcCce--EEEEeccccccccccCCCcchHHHHHHHH
Q 019381 183 LNGADVLE-NVAYARAYN----------TDHQSRLLLEAASMMVETRFA--LMIVDSATALYRTDFSGRGELSARQMHLA 249 (342)
Q Consensus 183 ~~~~~~~~-~i~~~~~~~----------~~~~~~~l~~l~~~~~~~~~~--lvviD~l~~l~~~~~~~~~~~~~r~~~l~ 249 (342)
.+.+.... ++.+..... .....+....+.+.+...+++ +||+|+++.++..+. . ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~------~----~~~ 144 (235)
T 2w0m_A 75 WDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP------A----MAR 144 (235)
T ss_dssp CCCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG------G----GHH
T ss_pred chHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH------H----HHH
Confidence 66553321 222222110 002233344444555567899 999999998863221 1 134
Q ss_pred HHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec--C-CeEEEEEEeCCCCCCe
Q 019381 250 KFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--G-EERICKVISSPCLAEA 326 (342)
Q Consensus 250 ~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~--~-~~r~~~v~K~r~~~~~ 326 (342)
++++.|+.++++++++||+++|..+..++. .. ..+.+.+|.++.|++.. + ..|.+.|.|+|..++.
T Consensus 145 ~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~----------~~-~~~~~~~d~vi~l~~~~~~~~~~r~l~v~K~r~~~~~ 213 (235)
T 2w0m_A 145 KISYYLKRVLNKWNFTIYATSQYAITTSQA----------FG-FGVEHVADGIIRFRRMIRNGELHRYILIEKMRQTDHD 213 (235)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEC----------------------CHHHHCSEEEEEEEEEETTEEEEEEEEEEETTCCCC
T ss_pred HHHHHHHHHHHhCCCeEEEEeccCcccccc----------cc-cchheeeeEEEEEEEEecCCcEEEEEEEEeccCCccc
Confidence 788899999999999999999998521110 01 46888999999999864 2 4689999999988764
Q ss_pred --eEEEEEecC-CCCC
Q 019381 327 --EARFQISAQ-GVAD 339 (342)
Q Consensus 327 --~~~f~I~~~-Gi~~ 339 (342)
.++|+|+++ ||.-
T Consensus 214 ~~~~~f~i~~~~Gi~~ 229 (235)
T 2w0m_A 214 KHVWEIDIVNGKGIVL 229 (235)
T ss_dssp CSCEEEEEETTTEEEE
T ss_pred ceeEEEEEcCCCCeEE
Confidence 479999999 9864
No 27
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.91 E-value=8.5e-23 Score=185.89 Aligned_cols=227 Identities=12% Similarity=0.141 Sum_probs=142.1
Q ss_pred cccccccc-CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHH-H
Q 019381 100 LEIIQITS-GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQ-I 177 (342)
Q Consensus 100 ~~~~~i~t-g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~-~ 177 (342)
....+++| |++.||.++ +|+++|++++|+|+||+|||||+.+++...+.. .+.+|+|++.|++ ...+.. +
T Consensus 12 ~~~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-----~G~~v~~~~~e~~--~~~~~~r~ 83 (296)
T 1cr0_A 12 EESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-----MGKKVGLAMLEES--VEETAEDL 83 (296)
T ss_dssp CCCCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-----SCCCEEEEESSSC--HHHHHHHH
T ss_pred CCcCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-----cCCeEEEEeCcCC--HHHHHHHH
Confidence 45678999 999999999 499999999999999999999999998776542 2447999999975 322222 2
Q ss_pred HH-HcCCCh--------------------hhhhc--ceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccc
Q 019381 178 AD-RYGLNG--------------------ADVLE--NVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTD 234 (342)
Q Consensus 178 ~~-~~~~~~--------------------~~~~~--~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~ 234 (342)
.. ..+.+. +.+++ ++.+.+........++...+.+....+++++||||+++.+....
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 84 IGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC------
T ss_pred HHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC
Confidence 11 112211 01121 23333221111222334444444456789999999999976421
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccc-----cCccccccccceEEEEEeec
Q 019381 235 FSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKP-----IGGNIMAHASTTRLALRKGR 309 (342)
Q Consensus 235 ~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p-----~~g~~~~~~~d~~l~l~~~~ 309 (342)
. ...+...+.++++.|+.++++++++||+++|.++..+.. .. .....| .++..+.+.+|.++.|++.+
T Consensus 164 ~-----~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~-~~-~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 164 G-----ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGK-AH-EEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-------------------CCC---CHHHHCSEEEEEEEC-
T ss_pred C-----CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccc-cc-ccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 0 012223467899999999999999999999997411100 00 011223 33447889999999999865
Q ss_pred C----CeEEEEEEeCC-CCCCeeE---EEEEecCCCCCCC
Q 019381 310 G----EERICKVISSP-CLAEAEA---RFQISAQGVADVK 341 (342)
Q Consensus 310 ~----~~r~~~v~K~r-~~~~~~~---~f~I~~~Gi~~~~ 341 (342)
. ..|.+.|.|+| +++.+.+ .|.++..|+.++.
T Consensus 237 ~~~~~~~~~l~i~K~R~~g~~g~~~~~~f~~~~~~f~~~~ 276 (296)
T 1cr0_A 237 QGDMPNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPSS 276 (296)
T ss_dssp ------CEEEEEEEETTTCCCEEEEEEEECTTTCCEEECC
T ss_pred ccCCCCeEEEEEEccccCCCCCceEEEEEEcCccEEecCC
Confidence 3 46899999999 5988763 5667778887654
No 28
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.90 E-value=2.5e-22 Score=177.79 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=144.0
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
...+++||++.||++++||+++|++++|.||||||||||+..++...+.+ .+.+++|++.+.. ...+...++.
T Consensus 8 ~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~ 80 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEER--ARDLRREMAS 80 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSC--HHHHHHHHHT
T ss_pred ccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEccCC--HHHHHHHHHH
Confidence 35679999999999999999999999999999999999999988655522 2456899998865 4455566667
Q ss_pred cCCChhhhh--cceeEeecCCH---------------HHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHH
Q 019381 181 YGLNGADVL--ENVAYARAYNT---------------DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSA 243 (342)
Q Consensus 181 ~~~~~~~~~--~~i~~~~~~~~---------------~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~ 243 (342)
+++.++... .++.+...... ....+....+...+...+++++++|++++.++...+ ...
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d----~~~ 156 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE----ERK 156 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS----GGG
T ss_pred cCCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC----HHH
Confidence 777665431 22222221111 112334445555556688999999999998753211 111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCcccccccc-ceEEEEEeec--C-CeEEEEEEe
Q 019381 244 RQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHAS-TTRLALRKGR--G-EERICKVIS 319 (342)
Q Consensus 244 r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~-d~~l~l~~~~--~-~~r~~~v~K 319 (342)
.. ..+...++.+ ++.|+|||+++|........ ..+..+.+.+ |.++.|.+.. + ..|.+.+.|
T Consensus 157 ~~---~~l~~l~~~l-~~~g~tii~vtH~~~~~~~~----------~~~~~i~~~~aD~vi~l~~~~~~~~~~r~l~i~K 222 (251)
T 2ehv_A 157 IR---EVLLKLNTIL-LEMGVTTILTTEAPDPQHGK----------LSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRK 222 (251)
T ss_dssp HH---HHHHHHHHHH-HHHCCEEEEEECCC----CC----------SSSSSCGGGGCSEEEEEEEEECSSSEEEEEEEEE
T ss_pred HH---HHHHHHHHHH-HHCCCeEEEEECCCCCCccc----------ccccChhhEeeeEEEEEeeeccCCeeEEEEEEEE
Confidence 11 1233344444 45699999999997743210 1223456777 9999998753 2 468999999
Q ss_pred CCCCCC--eeEEEEEecCCCCCC
Q 019381 320 SPCLAE--AEARFQISAQGVADV 340 (342)
Q Consensus 320 ~r~~~~--~~~~f~I~~~Gi~~~ 340 (342)
+|..++ ...+|+|+++||+-+
T Consensus 223 ~r~~~~~~~~~~~~i~~~Gi~v~ 245 (251)
T 2ehv_A 223 MRETRHSMKKYPFEIGPNGIVVY 245 (251)
T ss_dssp ETTCCCCCBEEEEEEETTEEEEC
T ss_pred ccCCCcCCceEEEEECCCCeEEc
Confidence 998775 447999999999754
No 29
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.86 E-value=5.5e-21 Score=172.47 Aligned_cols=222 Identities=14% Similarity=0.132 Sum_probs=135.1
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC----CCCceEEEecCCCCCHHHHHHHH
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG----GEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~----~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
..++||++.||.+++ |+++|++++|+|+||||||||+++++...+....+.+ .+++++|++.|+.. ..+...+
T Consensus 11 ~~i~tg~~~ld~~lg-gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~ 87 (279)
T 1nlf_A 11 EAFAAAPPPLDYVLP-NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRL 87 (279)
T ss_dssp HHHHSCCCCCCEEET-TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHH
T ss_pred HHhcCCCCChheeEC-CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH--HHHHHHH
Confidence 468999999999996 9999999999999999999999999875543111110 14579999999863 3333333
Q ss_pred HHcCCCh-----hhhhcceeEeecCC--HHHH-HHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHH
Q 019381 179 DRYGLNG-----ADVLENVAYARAYN--TDHQ-SRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAK 250 (342)
Q Consensus 179 ~~~~~~~-----~~~~~~i~~~~~~~--~~~~-~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~ 250 (342)
..++.+. ..+++++.+....+ ...+ ...+..+...+ .++++||||+++.++..+.. . ...+..
T Consensus 88 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~--~~~~livlDe~~~~~~~d~~---~----~~~~~~ 158 (279)
T 1nlf_A 88 HALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAA--EGRRLMVLDTLRRFHIEEEN---A----SGPMAQ 158 (279)
T ss_dssp HHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHH--TTCSEEEEECGGGGCCSCTT---C----HHHHHH
T ss_pred HHHHhhcChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhc--CCCCEEEECCHHHhcCCCcC---c----hHHHHH
Confidence 3333321 12344554433211 0000 01133333333 36999999999997643211 1 123568
Q ss_pred HHHHHHHHHHHhCCEEEEEeccccccCCCcccC-CC-CccccCccccccccceEEEEEeec----------CC----eEE
Q 019381 251 FLRSLQKLADEFGVAVVITNQVVAQVDGSAIFA-GP-QIKPIGGNIMAHASTTRLALRKGR----------GE----ERI 314 (342)
Q Consensus 251 i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~-~~-~~~p~~g~~~~~~~d~~l~l~~~~----------~~----~r~ 314 (342)
+++.|+.++++.|++||+++|..+.... ++ +. .....++..+.+.+.....+++.. .+ ...
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~~~~~---~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 235 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASKGAAM---MGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVR 235 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-----------------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGEEE
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCcccc---cCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCCChhhcCcEEE
Confidence 8999999999999999999999874321 10 00 012345566666555555555432 11 234
Q ss_pred EEEEeCCCCCCee-EEEEEecCCCCC
Q 019381 315 CKVISSPCLAEAE-ARFQISAQGVAD 339 (342)
Q Consensus 315 ~~v~K~r~~~~~~-~~f~I~~~Gi~~ 339 (342)
+.|.|||++|++. ..|.+++.|+..
T Consensus 236 ~~v~K~~~~~~~~~~~~~~~~~G~l~ 261 (279)
T 1nlf_A 236 FGVSKANYGAPFADRWFRRHDGGVLK 261 (279)
T ss_dssp EEEEECSSSSCCCCEEEEECGGGCEE
T ss_pred eeeccccCCCCCCceEEEEcCCeeEe
Confidence 7899999998865 579999888754
No 30
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.85 E-value=4e-20 Score=181.08 Aligned_cols=207 Identities=20% Similarity=0.177 Sum_probs=142.6
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
...++||++.||++++||+++|++++|.|+||+|||||+.+++..... .+.+++|++++.+ ...+...+.++
T Consensus 260 ~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~------~G~~vi~~~~ee~--~~~l~~~~~~~ 331 (525)
T 1tf7_A 260 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA------NKERAILFAYEES--RAQLLRNAYSW 331 (525)
T ss_dssp CCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT------TTCCEEEEESSSC--HHHHHHHHHTT
T ss_pred cceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh------CCCCEEEEEEeCC--HHHHHHHHHHc
Confidence 357889999999999999999999999999999999999998865443 2457899999875 44555556667
Q ss_pred CCChhhhhc--ceeEeec----CCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHH
Q 019381 182 GLNGADVLE--NVAYARA----YNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSL 255 (342)
Q Consensus 182 ~~~~~~~~~--~i~~~~~----~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~L 255 (342)
+.+.+++.. .+.+... .+.. +....+.+.+...+++++|+|+++.+.. ... + .+ ....+.+.+
T Consensus 332 g~~~~~~~~~g~~~~~~~~p~~LS~g---~~q~~~~a~~l~~~p~llilDp~~~Ld~-~~~--~--~~---~~~~i~~ll 400 (525)
T 1tf7_A 332 GMDFEEMERQNLLKIVCAYPESAGLE---DHLQIIKSEINDFKPARIAIDSLSALAR-GVS--N--NA---FRQFVIGVT 400 (525)
T ss_dssp SCCHHHHHHTTSEEECCCCGGGSCHH---HHHHHHHHHHHTTCCSEEEEECHHHHTS-SSC--H--HH---HHHHHHHHH
T ss_pred CCCHHHHHhCCCEEEEEeccccCCHH---HHHHHHHHHHHhhCCCEEEEcChHHHHh-hCC--h--HH---HHHHHHHHH
Confidence 776554322 2233221 1222 2233334455568899999995555533 221 1 11 112333344
Q ss_pred HHHHHHhCCEEEEEeccccccCCCcccCCCCccccCc-cccccccceEEEEEeec---CCeEEEEEEeCCCCCC-ee-EE
Q 019381 256 QKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGG-NIMAHASTTRLALRKGR---GEERICKVISSPCLAE-AE-AR 329 (342)
Q Consensus 256 k~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g-~~~~~~~d~~l~l~~~~---~~~r~~~v~K~r~~~~-~~-~~ 329 (342)
+ .+++.|++||+++|.....+. + ++. ..+.+.+|.++.|+..+ ...|.++|.|+|++++ .. .+
T Consensus 401 ~-~l~~~g~tvilvsh~~~~~~~---~-------~~~~~~l~~~~D~vi~L~~ge~~~~~~R~l~v~K~R~~~~~~~~~~ 469 (525)
T 1tf7_A 401 G-YAKQEEITGLFTNTSDQFMGA---H-------SITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIRE 469 (525)
T ss_dssp H-HHHHTTCEEEEEEECSSSSCC---C-------SSCSSCCTTTCSEEEEEEEEEETTEEEEEEEEEEESSSCCCCBCEE
T ss_pred H-HHHhCCCEEEEEECcccccCc---c-------cccCcccceeeeEEEEEEEEEeCCEEEEEEEEEECCCCCCCCCEEE
Confidence 4 445679999999998742221 1 122 56789999999998764 3579999999999987 33 79
Q ss_pred EEEecCCCC
Q 019381 330 FQISAQGVA 338 (342)
Q Consensus 330 f~I~~~Gi~ 338 (342)
|+|+++||.
T Consensus 470 f~i~~~Gi~ 478 (525)
T 1tf7_A 470 FMISDKGPD 478 (525)
T ss_dssp EEECSSCEE
T ss_pred EEEcCCCEE
Confidence 999999987
No 31
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.78 E-value=5.6e-18 Score=149.82 Aligned_cols=205 Identities=11% Similarity=-0.018 Sum_probs=129.7
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCC
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGL 183 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 183 (342)
.++||++.||++|+||+++|.+++|.|.||+|||+|+.|++.+.+. .+.+++|++.+.+ +..+...++.+|+
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~------~Ge~~~~~~~~e~--~~~l~~~~~~~G~ 73 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK------SDNLVGMFSISYP--LQLIIRILSRFGV 73 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH------TTCEEEEEECSSC--HHHHHHHHHHTTC
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH------CCCcEEEEEEeCC--HHHHHHHHHHcCC
Confidence 4789999999999999999999999999999999999999998887 5889999999975 7777788899999
Q ss_pred Chhhhhc--ceeEeec--------------------CCHHHHHHHHHHHHHH------hHh-cC-ce-EEEEeccccccc
Q 019381 184 NGADVLE--NVAYARA--------------------YNTDHQSRLLLEAASM------MVE-TR-FA-LMIVDSATALYR 232 (342)
Q Consensus 184 ~~~~~~~--~i~~~~~--------------------~~~~~~~~~l~~l~~~------~~~-~~-~~-lvviD~l~~l~~ 232 (342)
+.+...+ ++.+.+. .+..++...+..+... +.. .+ .+ ++|||++.++..
T Consensus 74 dl~~~~~~g~l~i~d~~~~~~~~~~~~~~v~~~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl~~ 153 (260)
T 3bs4_A 74 DVIKYLENHRLAIVDTFGSFHGIKATMPGVWYLEGMLSSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGYLE 153 (260)
T ss_dssp CHHHHHHTTSEEEECHHHHHHTC---CTTEECCCSCCCTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGGGG
T ss_pred CHHHHhhCCcEEEEEcccccccccccccceecccccCCHHHHHHHHHHHHHhhccccchhhccCCceEEEEEeecchHHH
Confidence 9876543 3444422 2233332223332222 111 23 45 347777776653
Q ss_pred cccCCCcchHHHHHHHHHHHHH--HHHHHHH-hCCEEEEEeccccccCCCcccCCCCccccCccccccccceEEEEEeec
Q 019381 233 TDFSGRGELSARQMHLAKFLRS--LQKLADE-FGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR 309 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~--Lk~la~~-~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~ 309 (342)
.- . ...-.+.+..++.. ...+.++ .+++.+++++ ..... .......+.+|.+|.|+...
T Consensus 154 ~~-~----~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil~~~--~~~~~-----------~~~~~l~~laD~VI~lr~~e 215 (260)
T 3bs4_A 154 VF-T----PEETLRYLETSAEVRYGHPAYKKYPRGTNFWLWE--GVKDK-----------RVLLSVYRRADYVLKTRSSL 215 (260)
T ss_dssp TS-C----HHHHHHHHHHHHHHHHHCHHHHSSCCCEEEEEEE--SCSCH-----------HHHHHHHHHCSEEEEEEEEE
T ss_pred Hh-C----hhhHHHHHHHHHHhhhhHHHHhccCCcEEEEEEC--CCccc-----------ccccceEEEeeEEEEEEEEe
Confidence 31 1 11111112222222 1123333 5777777654 21111 11234667899999998652
Q ss_pred --C-CeEEEEEEeCCCCCCee--EEEEEec
Q 019381 310 --G-EERICKVISSPCLAEAE--ARFQISA 334 (342)
Q Consensus 310 --~-~~r~~~v~K~r~~~~~~--~~f~I~~ 334 (342)
+ ..|.+.|.|+|...+.. .+|+|+.
T Consensus 216 ~~g~~rR~L~V~K~Rg~~~~~~~re~~i~~ 245 (260)
T 3bs4_A 216 GENGIKRELLVIKTPKPIEELVRFEYEFKG 245 (260)
T ss_dssp ETTEEEEEEEEEECCC-----CEEEEEEET
T ss_pred cCCceEEEEEEEECCCCCcCCceEEEEEec
Confidence 3 46899999999876643 4577775
No 32
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.73 E-value=1.9e-16 Score=155.00 Aligned_cols=211 Identities=18% Similarity=0.248 Sum_probs=145.5
Q ss_pred ccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 102 IIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
...+++|++.||.++.|++++|++++|.|+||||||||+.+++.+.+.++ +.+++|++++.. ...+...++.+
T Consensus 18 ~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-----~~g~i~v~g~~~--~~~~~~~~~~~ 90 (525)
T 1tf7_A 18 IAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----DEPGVFVTFEET--PQDIIKNARSF 90 (525)
T ss_dssp CCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSC--HHHHHHHHGGG
T ss_pred cccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEEEEeCC--HHHHHHHHHHc
Confidence 56789999999999999999999999999999999999999766666643 345999999873 45555666778
Q ss_pred CCChhhhh--cceeEeecC---------CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHH
Q 019381 182 GLNGADVL--ENVAYARAY---------NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAK 250 (342)
Q Consensus 182 ~~~~~~~~--~~i~~~~~~---------~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~ 250 (342)
++..++.. .++.+.... ....+...+.+....+...++++|+||+++.+.+... .+... ...
T Consensus 91 g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~---lD~~~----~~~ 163 (525)
T 1tf7_A 91 GWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYD---ASSVV----RRE 163 (525)
T ss_dssp TCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTC---CHHHH----HHH
T ss_pred CCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcC---CHHHH----HHH
Confidence 88766433 224333221 1223444555556666667899999999998764310 01122 235
Q ss_pred HHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccc-cccccceEEEEEeec---CCeEEEEEEeCCCCCC-
Q 019381 251 FLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNI-MAHASTTRLALRKGR---GEERICKVISSPCLAE- 325 (342)
Q Consensus 251 i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~-~~~~~d~~l~l~~~~---~~~r~~~v~K~r~~~~- 325 (342)
+...++.+.+ .|+|||+++|........ .... ..+++|.++.|+... ...|.+.+.|.|..+.
T Consensus 164 l~~ll~~l~~-~g~tvl~itH~~~~~~~~-----------~~~~i~~~laD~vi~L~~~~~~G~~~r~l~~~k~r~~~~~ 231 (525)
T 1tf7_A 164 LFRLVARLKQ-IGATTVMTTERIEEYGPI-----------ARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHM 231 (525)
T ss_dssp HHHHHHHHHH-HTCEEEEEEECSSSSSCS-----------STTSCHHHHCSEEEEEEEECSTTCCEEEEEEEEETTSCCC
T ss_pred HHHHHHHHHH-CCCEEEEEecCCCCcccc-----------ccccceeeeeeEEEEEEEEccCCceeEEEEEEECCCCCCC
Confidence 6666666655 599999999987633210 1112 246689999998742 3568899999886543
Q ss_pred -eeEEEEEecCCCC
Q 019381 326 -AEARFQISAQGVA 338 (342)
Q Consensus 326 -~~~~f~I~~~Gi~ 338 (342)
...+|.|+..|+.
T Consensus 232 ~~~~~~~i~~~gi~ 245 (525)
T 1tf7_A 232 KGEYPFTITDHGIN 245 (525)
T ss_dssp CSEEEEEEETTEEE
T ss_pred CceEEEEEcCCCEE
Confidence 3468999888875
No 33
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=99.54 E-value=3.7e-15 Score=114.05 Aligned_cols=110 Identities=56% Similarity=0.889 Sum_probs=67.5
Q ss_pred hhHHHHhhhhhhhhcCCCccchhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccC
Q 019381 8 KTVQQQQQEELEEIQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPL 87 (342)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (342)
..|+..+....++.+..|.+++.|+..|+.+..+++|+++||.|++++...++.+|..+.|+++..+.+++..+++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~~ 84 (114)
T 1b22_A 5 MQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPM 84 (114)
T ss_dssp -----------CCSCSSCCCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSCC
T ss_pred HHHHHhchHHhhccccCCccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHccc
Confidence 34555556666778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHhhhccccccccCChhhHhhhc
Q 019381 88 GFTSATQLHAQRLEIIQITSGSRELDKILE 117 (342)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~tg~~~LD~~l~ 117 (342)
+|.++.++++.+.....|+||+..||.+|+
T Consensus 85 gF~ta~e~~~~r~~~~~itTGs~~lD~lLg 114 (114)
T 1b22_A 85 GFTTATEFHQRRSEIIQITTGSKELDKLLQ 114 (114)
T ss_dssp C-----------------------------
T ss_pred CCCcHHHHHHHhcCCCeeccCcHHHHhhhC
Confidence 999999999988889999999999999985
No 34
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.53 E-value=1.1e-14 Score=131.67 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=89.1
Q ss_pred ccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec--CCCCCHHHHHHHHHHc
Q 019381 104 QITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA--EGTFRPQRLLQIADRY 181 (342)
Q Consensus 104 ~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~--e~~~~~~rl~~~~~~~ 181 (342)
.++||++.||.++ ||+++|.+++|+|+||+|||+|+.+++.. . +.+|+|++. +..++
T Consensus 105 ~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~--~-------G~~VlyIs~~~eE~v~----------- 163 (331)
T 2vhj_A 105 ELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA--L-------GGKDKYATVRFGEPLS----------- 163 (331)
T ss_dssp TCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH--H-------HTTSCCEEEEBSCSST-----------
T ss_pred ccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh--C-------CCCEEEEEecchhhhh-----------
Confidence 4679999999999 89999999999999999999999999865 1 457999998 32210
Q ss_pred CCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 019381 182 GLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE 261 (342)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~ 261 (342)
.. . .+. ...+..+...+...+ +||||+++.+...... .+......+.+.+++..|..++++
T Consensus 164 ------~~------~-~~l---e~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~-~s~~G~v~~~lrqlL~~L~~~~k~ 224 (331)
T 2vhj_A 164 ------GY------N-TDF---NVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG-NTTSGGISRGAFDLLSDIGAMAAS 224 (331)
T ss_dssp ------TC------B-CCH---HHHHHHHHHHHHHCS--EEEEECCTTTC------------CCHHHHHHHHHHHHHHHH
T ss_pred ------hh------h-cCH---HHHHHHHHHHHhhCC--EEEEeccccccccccc-ccccchHHHHHHHHHHHHHHHHhh
Confidence 00 0 122 233444444454454 9999999998543211 000111123467889999999999
Q ss_pred hCCEEEEEeccc
Q 019381 262 FGVAVVITNQVV 273 (342)
Q Consensus 262 ~~~~vi~~~h~~ 273 (342)
.++++|++++..
T Consensus 225 ~gvtVIlttnp~ 236 (331)
T 2vhj_A 225 RGCVVIASLNPT 236 (331)
T ss_dssp HTCEEEEECCCS
T ss_pred CCCEEEEEeCCc
Confidence 999999987643
No 35
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.25 E-value=1.8e-11 Score=109.44 Aligned_cols=146 Identities=17% Similarity=0.351 Sum_probs=86.2
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC-CCHHHHHHHHHHcCC---C
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT-FRPQRLLQIADRYGL---N 184 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~-~~~~rl~~~~~~~~~---~ 184 (342)
...|+.+.. -+++|+++.|.||+|||||||+..++ ...++..| .++++++.- ........+.+..++ +
T Consensus 21 ~~~L~~isl-~i~~Ge~~~iiGpnGsGKSTLl~~l~--Gl~~p~~G-----~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~ 92 (275)
T 3gfo_A 21 THALKGINM-NIKRGEVTAILGGNGVGKSTLFQNFN--GILKPSSG-----RILFDNKPIDYSRKGIMKLRESIGIVFQD 92 (275)
T ss_dssp CEEEEEEEE-EEETTSEEEEECCTTSSHHHHHHHHT--TSSCCSEE-----EEEETTEECCCSHHHHHHHHHSEEEECSS
T ss_pred CeEEEeeEE-EEcCCCEEEEECCCCCCHHHHHHHHH--cCCCCCCe-----EEEECCEECCcccccHHHHhCcEEEEEcC
Confidence 346777766 79999999999999999999999653 56655443 666766532 122222233333332 1
Q ss_pred hh------hhhcceeEee---cCCHHH----HHHHHHHH----------------------HHHhHhcCceEEEEecccc
Q 019381 185 GA------DVLENVAYAR---AYNTDH----QSRLLLEA----------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 185 ~~------~~~~~i~~~~---~~~~~~----~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~ 229 (342)
+. .+.+++.+.. ..+..+ ..+.++.+ .+.....+|+++++|++++
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts 172 (275)
T 3gfo_A 93 PDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTA 172 (275)
T ss_dssp GGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred cccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 11 2222322211 011111 11122211 1222237899999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.++. .. ...+++.|++++++.|+|||+++|-..
T Consensus 173 ~LD~--------~~----~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 173 GLDP--------MG----VSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp TCCH--------HH----HHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred cCCH--------HH----HHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 8764 22 237788888887455999999999765
No 36
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.23 E-value=2.6e-11 Score=112.07 Aligned_cols=146 Identities=18% Similarity=0.291 Sum_probs=89.6
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCC---
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGL--- 183 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~--- 183 (342)
...|+.+.. -+++|+++.|.||||||||||+..+ +...++..| .+++++.. ..+...++...+..++
T Consensus 41 ~~aL~~vsl-~i~~Gei~~IiGpnGaGKSTLlr~i--~GL~~p~~G-----~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q 112 (366)
T 3tui_C 41 IQALNNVSL-HVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEG-----SVLVDGQELTTLSESELTKARRQIGMIFQ 112 (366)
T ss_dssp EEEEEEEEE-EECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEE-----EEEETTEECSSCCHHHHHHHHTTEEEECS
T ss_pred eEEEEeeEE-EEcCCCEEEEEcCCCchHHHHHHHH--hcCCCCCce-----EEEECCEECCcCCHHHHHHHhCcEEEEeC
Confidence 346777777 8999999999999999999999954 466665444 66666542 1233333222222221
Q ss_pred ----Chh-hhhcceeEee---cCCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEecccc
Q 019381 184 ----NGA-DVLENVAYAR---AYNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATA 229 (342)
Q Consensus 184 ----~~~-~~~~~i~~~~---~~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~ 229 (342)
.+. ++.+|+.+.. ..+.. ...++++.+ .+.....+|+++++|++++
T Consensus 113 ~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs 192 (366)
T 3tui_C 113 HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATS 192 (366)
T ss_dssp SCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTT
T ss_pred CCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 111 2333332210 11111 122222222 1222236899999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 230 LYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 230 l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.++.. . ...++..|++++++.|+|||+++|-..
T Consensus 193 ~LD~~--------~----~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 193 ALDPA--------T----TRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp TSCHH--------H----HHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred cCCHH--------H----HHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 87642 2 237888899999889999999999765
No 37
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.22 E-value=1.6e-11 Score=109.45 Aligned_cols=140 Identities=17% Similarity=0.205 Sum_probs=82.9
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCCC---
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGLN--- 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~--- 184 (342)
+.|+.+.. -+++|+++.|.||+|||||||+..++ ...++..| .+++++..- .+... +.+..++-
T Consensus 25 ~vL~~vsl-~i~~Ge~~~liG~nGsGKSTLl~~l~--Gl~~p~~G-----~I~~~g~~~~~~~~~~---~~~~i~~v~q~ 93 (266)
T 4g1u_C 25 ALINDVSL-HIASGEMVAIIGPNGAGKSTLLRLLT--GYLSPSHG-----ECHLLGQNLNSWQPKA---LARTRAVMRQY 93 (266)
T ss_dssp EEEEEEEE-EEETTCEEEEECCTTSCHHHHHHHHT--SSSCCSSC-----EEEETTEETTTSCHHH---HHHHEEEECSC
T ss_pred eEEEeeEE-EEcCCCEEEEECCCCCcHHHHHHHHh--cCCCCCCc-----EEEECCEECCcCCHHH---HhheEEEEecC
Confidence 45666666 79999999999999999999999654 56665544 566655421 12221 22222110
Q ss_pred -----hhhhhcceeEeec----CC-HHHHHHHH------------------------HHHHHHhHhc------CceEEEE
Q 019381 185 -----GADVLENVAYARA----YN-TDHQSRLL------------------------LEAASMMVET------RFALMIV 224 (342)
Q Consensus 185 -----~~~~~~~i~~~~~----~~-~~~~~~~l------------------------~~l~~~~~~~------~~~lvvi 224 (342)
.-.+.+++.+... .. .....+.+ ..+++++ . +|+++++
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~--~~~~~~~~p~lLll 171 (266)
T 4g1u_C 94 SELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA--QLWQPQPTPRWLFL 171 (266)
T ss_dssp CCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH--HTCCSSCCCEEEEE
T ss_pred CccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh--cccccCCCCCEEEE
Confidence 0112222221110 00 11111111 1112222 4 8999999
Q ss_pred eccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 225 DSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 225 D~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
|++++.++. .. ...+++.|++++++.++|||+++|-..
T Consensus 172 DEPts~LD~--------~~----~~~i~~~l~~l~~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 172 DEPTSALDL--------YH----QQHTLRLLRQLTRQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCCCSSCCH--------HH----HHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred eCccccCCH--------HH----HHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence 999998764 22 237888888988887889999999765
No 38
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.21 E-value=6.4e-11 Score=103.64 Aligned_cols=145 Identities=23% Similarity=0.325 Sum_probs=84.9
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHH-HHcCC---
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIA-DRYGL--- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~-~~~~~--- 183 (342)
..|+.+.. -+++|+++.|.||+|||||||+..++ ...++..| .+++++.. ..+........ +..++
T Consensus 19 ~~L~~isl-~i~~Ge~~~iiG~nGsGKSTLl~~l~--Gl~~p~~G-----~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 90 (235)
T 3tif_A 19 YALKNVNL-NIKEGEFVSIMGPSGSGKSTMLNIIG--CLDKPTEG-----EVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90 (235)
T ss_dssp EEEEEEEE-EECTTCEEEEECSTTSSHHHHHHHHT--TSSCCSEE-----EEEETTEECTTCCHHHHHHHHHHHEEEECT
T ss_pred eeEEeeeE-EEcCCCEEEEECCCCCcHHHHHHHHh--cCCCCCce-----EEEECCEEcccCCHHHHHHHhhccEEEEec
Confidence 35666666 79999999999999999999999543 56655443 56666542 12232222221 12221
Q ss_pred ----Chh-hhhcceeEee------cCCHHH----HHHHHHHH-----------------------HHHhHhcCceEEEEe
Q 019381 184 ----NGA-DVLENVAYAR------AYNTDH----QSRLLLEA-----------------------ASMMVETRFALMIVD 225 (342)
Q Consensus 184 ----~~~-~~~~~i~~~~------~~~~~~----~~~~l~~l-----------------------~~~~~~~~~~lvviD 225 (342)
.+. .+.+|+.+.. ...... ..+.++.+ .+.....+|+++++|
T Consensus 91 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 111 2333332210 011111 11111110 112223689999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 226 ~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++++.++. .. ...++..|++++++.+.|||+++|-..
T Consensus 171 EPts~LD~--------~~----~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 171 QPTWALDS--------KT----GEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp STTTTSCH--------HH----HHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCcccCCH--------HH----HHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 99998764 22 237888888888888999999999754
No 39
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.16 E-value=1e-10 Score=103.73 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=82.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCCCh---
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGLNG--- 185 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~--- 185 (342)
.|+.+-. -+++|+++.|.||+|||||||+..++ ...++..| .+++++..- .+... ...+..++-+
T Consensus 22 vl~~vsl-~i~~Ge~~~liG~nGsGKSTLlk~l~--Gl~~p~~G-----~i~~~g~~~~~~~~~~--~~~~~i~~v~q~~ 91 (257)
T 1g6h_A 22 ALDGVSI-SVNKGDVTLIIGPNGSGKSTLINVIT--GFLKADEG-----RVYFENKDITNKEPAE--LYHYGIVRTFQTP 91 (257)
T ss_dssp EEEEECC-EEETTCEEEEECSTTSSHHHHHHHHT--TSSCCSEE-----EEEETTEECTTCCHHH--HHHHTEEECCCCC
T ss_pred eEeeeEE-EEeCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----EEEECCEECCCCCHHH--HHhCCEEEEccCC
Confidence 4666655 78999999999999999999999654 55655443 666665421 11111 1112222211
Q ss_pred -----hhhhcceeEeec----------------CC-H---HHHHHHHHHH----------------------HHHhHhcC
Q 019381 186 -----ADVLENVAYARA----------------YN-T---DHQSRLLLEA----------------------ASMMVETR 218 (342)
Q Consensus 186 -----~~~~~~i~~~~~----------------~~-~---~~~~~~l~~l----------------------~~~~~~~~ 218 (342)
-++.+++.+... .. . ....++++.+ .+.....+
T Consensus 92 ~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~ 171 (257)
T 1g6h_A 92 QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN 171 (257)
T ss_dssp GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcC
Confidence 123333332110 01 1 1122222211 11222368
Q ss_pred ceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 219 FALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 219 ~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
|+++++|++++.++. .. ...+.+.|++++++ +.+||+++|-..
T Consensus 172 p~lllLDEPts~LD~--------~~----~~~l~~~l~~l~~~-g~tvi~vtHd~~ 214 (257)
T 1g6h_A 172 PKMIVMDEPIAGVAP--------GL----AHDIFNHVLELKAK-GITFLIIEHRLD 214 (257)
T ss_dssp CSEEEEESTTTTCCH--------HH----HHHHHHHHHHHHHT-TCEEEEECSCCS
T ss_pred CCEEEEeCCccCCCH--------HH----HHHHHHHHHHHHHC-CCEEEEEecCHH
Confidence 999999999998764 22 23677788888766 999999999754
No 40
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.14 E-value=3e-11 Score=112.43 Aligned_cols=143 Identities=14% Similarity=0.241 Sum_probs=81.6
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCC
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLN 184 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~ 184 (342)
...|+.+-. -+++|+++.|.||||||||||+..++ ...++..| .++++.+.- .++.+ +..+++.+.+.
T Consensus 16 ~~~L~~vsl-~i~~Ge~~~llGpsGsGKSTLLr~ia--Gl~~p~~G-----~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~ 87 (381)
T 3rlf_A 16 VVVSKDINL-DIHEGEFVVFVGPSGCGKSTLLRMIA--GLETITSG-----DLFIGEKRMNDTPPAERGVGMVFQSYALY 87 (381)
T ss_dssp EEEEEEEEE-EECTTCEEEEECCTTSSHHHHHHHHH--TSSCCSEE-----EEEETTEECTTCCGGGSCEEEECTTCCCC
T ss_pred EEEEeeeEE-EECCCCEEEEEcCCCchHHHHHHHHH--cCCCCCCe-----EEEECCEECCCCCHHHCCEEEEecCCcCC
Confidence 345666666 79999999999999999999999654 66655443 444443310 00000 00001111111
Q ss_pred hh-hhhcceeEe--------------------------------ecCCHHHHHHHHHHHHHHhHhcCceEEEEecccccc
Q 019381 185 GA-DVLENVAYA--------------------------------RAYNTDHQSRLLLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 185 ~~-~~~~~i~~~--------------------------------~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
+. ++.+|+.+. ...+.- ..+.+..++++ ..+|+++++|++++.+
T Consensus 88 p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGG-qrQRVaiArAL--~~~P~lLLLDEPts~L 164 (381)
T 3rlf_A 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGG-QRQRVAIGRTL--VAEPSVFLLDEPLSNL 164 (381)
T ss_dssp TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHH-HHHHHHHHHHH--HHCCSEEEEESTTTTS
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHH-HHHHHHHHHHH--HcCCCEEEEECCCcCC
Confidence 11 122222111 111111 11122222222 3689999999999987
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+. ..+ .++...|+++.++.|+|+|+++|-..
T Consensus 165 D~--------~~~----~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 165 DA--------ALR----VQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp CH--------HHH----HHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CH--------HHH----HHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 63 222 37778889998899999999999754
No 41
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.13 E-value=9.1e-11 Score=104.28 Aligned_cols=144 Identities=20% Similarity=0.326 Sum_probs=82.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC-CHHHHHHHHHHcCC-----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF-RPQRLLQIADRYGL----- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~-~~~rl~~~~~~~~~----- 183 (342)
..|+.+-. -+++|+++.|.||+|||||||+..++ ...++..| .+++++..-. +......+.+..++
T Consensus 38 ~vL~~vsl-~i~~Gei~~liG~NGsGKSTLlk~l~--Gl~~p~~G-----~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~ 109 (263)
T 2olj_A 38 EVLKGINV-HIREGEVVVVIGPSGSGKSTFLRCLN--LLEDFDEG-----EIIIDGINLKAKDTNLNKVREEVGMVFQRF 109 (263)
T ss_dssp EEEEEEEE-EECTTCEEEEECCTTSSHHHHHHHHT--TSSCCSEE-----EEEETTEESSSTTCCHHHHHHHEEEECSSC
T ss_pred EEEEeeEE-EEcCCCEEEEEcCCCCcHHHHHHHHH--cCCCCCCc-----EEEECCEECCCccccHHHHhCcEEEEeCCC
Confidence 35666666 79999999999999999999999654 55655443 5556543210 00001111222221
Q ss_pred --Chh-hhhcceeEee----cCCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 184 --NGA-DVLENVAYAR----AYNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 184 --~~~-~~~~~i~~~~----~~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
.+. ++.+++.+.. ..... ...++++.+ .+.....+|+++++|++++.
T Consensus 110 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~ 189 (263)
T 2olj_A 110 NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189 (263)
T ss_dssp CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCccc
Confidence 111 2333332210 01111 111222211 12222368999999999998
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++. .. ...+.+.|++++++ +.+||+++|-..
T Consensus 190 LD~--------~~----~~~~~~~l~~l~~~-g~tvi~vtHd~~ 220 (263)
T 2olj_A 190 LDP--------EM----VGEVLSVMKQLANE-GMTMVVVTHEMG 220 (263)
T ss_dssp SCH--------HH----HHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred CCH--------HH----HHHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence 764 22 23677788888776 999999999754
No 42
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.13 E-value=6.6e-11 Score=102.82 Aligned_cols=143 Identities=19% Similarity=0.254 Sum_probs=81.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHH-HHcCC----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIA-DRYGL---- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~-~~~~~---- 183 (342)
.|+.+.. -+++|+++.|.||+|||||||+..++ ...++..| .++++...- .+......+. +..++
T Consensus 19 ~l~~vsl-~i~~Ge~~~iiG~nGsGKSTLl~~l~--Gl~~p~~G-----~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 90 (224)
T 2pcj_A 19 ILKGISL-SVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEG-----KVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90 (224)
T ss_dssp EEEEEEE-EEETTCEEEEEECTTSCHHHHHHHHT--TSSCCSEE-----EEEETTEECCSSCHHHHHHHHHHHEEEECSS
T ss_pred eEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCce-----EEEECCEECCCCCHHHHHHHHhCcEEEEecC
Confidence 4565555 78999999999999999999999654 55655443 556654321 1222111111 22322
Q ss_pred ---Chh-hhhcceeEee---cCCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 184 ---NGA-DVLENVAYAR---AYNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 184 ---~~~-~~~~~i~~~~---~~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
.+. .+.+++.+.. .... ....++++.+ .+.....+|+++++|++++.
T Consensus 91 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 170 (224)
T 2pcj_A 91 HYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGN 170 (224)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 111 2223332210 0010 1111222211 11222368999999999998
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++. .. ...+.+.|++++++ +.+||+++|-..
T Consensus 171 LD~--------~~----~~~~~~~l~~l~~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 171 LDS--------AN----TKRVMDIFLKINEG-GTSIVMVTHERE 201 (224)
T ss_dssp CCH--------HH----HHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred CCH--------HH----HHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence 764 22 23677788888777 999999999754
No 43
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.11 E-value=3.6e-11 Score=111.09 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=82.8
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC------CCCHH--HHHHHHHH
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG------TFRPQ--RLLQIADR 180 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~------~~~~~--rl~~~~~~ 180 (342)
...|+.+-. -+++|+++.|.||||||||||+..++ ...+++.| .++++++. ..... .+..+++.
T Consensus 17 ~~~L~~vsl-~i~~Ge~~~llGpsGsGKSTLLr~ia--Gl~~p~~G-----~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~ 88 (359)
T 3fvq_A 17 TPVLNDISL-SLDPGEILFIIGASGCGKTTLLRCLA--GFEQPDSG-----EISLSGKTIFSKNTNLPVRERRLGYLVQE 88 (359)
T ss_dssp EEEEEEEEE-EECTTCEEEEEESTTSSHHHHHHHHH--TSSCCSEE-----EEEETTEEEESSSCBCCGGGSCCEEECTT
T ss_pred EEEEEeeEE-EEcCCCEEEEECCCCchHHHHHHHHh--cCCCCCCc-----EEEECCEECcccccccchhhCCEEEEeCC
Confidence 345666666 79999999999999999999999654 66655544 44544321 01110 01111122
Q ss_pred cCCChh-hhhcceeEeec---CCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEeccccc
Q 019381 181 YGLNGA-DVLENVAYARA---YNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 181 ~~~~~~-~~~~~i~~~~~---~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
+.+.+. ++.+|+.+... ... ....+.++.+ .+.....+|+++++|++++.
T Consensus 89 ~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~ 168 (359)
T 3fvq_A 89 GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSA 168 (359)
T ss_dssp CCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 222221 23333322110 000 1111222211 12222378999999999998
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++. ..+ .++...|+++.++.++|+|+++|-..
T Consensus 169 LD~--------~~r----~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 169 LDE--------QLR----RQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp SCH--------HHH----HHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCH--------HHH----HHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 764 222 25666788888888999999999654
No 44
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.08 E-value=2.9e-10 Score=100.69 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=78.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC-CHHHHHHHHHHcCC-----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF-RPQRLLQIADRYGL----- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~-~~~rl~~~~~~~~~----- 183 (342)
..|+.+.. -+++|+++.|.||+|||||||+..++ ...++..| .++++...-. ... .+.+..++
T Consensus 29 ~vl~~vsl-~i~~Gei~~l~G~NGsGKSTLlk~l~--Gl~~p~~G-----~I~~~g~~~~~~~~---~~~~~i~~v~q~~ 97 (256)
T 1vpl_A 29 EILKGISF-EIEEGEIFGLIGPNGAGKTTTLRIIS--TLIKPSSG-----IVTVFGKNVVEEPH---EVRKLISYLPEEA 97 (256)
T ss_dssp EEEEEEEE-EECTTCEEEEECCTTSSHHHHHHHHT--TSSCCSEE-----EEEETTEETTTCHH---HHHTTEEEECTTC
T ss_pred EEEEeeEE-EEcCCcEEEEECCCCCCHHHHHHHHh--cCCCCCce-----EEEECCEECCccHH---HHhhcEEEEcCCC
Confidence 34666665 79999999999999999999999654 55555443 4445443210 011 11111111
Q ss_pred --Chh-hhhcceeEee---cCCH----HHHHHHHHHH----------------------HHHhHhcCceEEEEecccccc
Q 019381 184 --NGA-DVLENVAYAR---AYNT----DHQSRLLLEA----------------------ASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 184 --~~~-~~~~~i~~~~---~~~~----~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~ 231 (342)
.+. ++.+++.+.. .... ....++++.+ .+.....+|+++++|++++.+
T Consensus 98 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~L 177 (256)
T 1vpl_A 98 GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL 177 (256)
T ss_dssp CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTC
T ss_pred CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccc
Confidence 111 1222222110 0011 0111112111 112223789999999999987
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 232 ~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+. ..+ ..+.+.|+.++++ +.|||+++|-..
T Consensus 178 D~--------~~~----~~l~~~l~~l~~~-g~tiiivtHd~~ 207 (256)
T 1vpl_A 178 DV--------LNA----REVRKILKQASQE-GLTILVSSHNML 207 (256)
T ss_dssp CH--------HHH----HHHHHHHHHHHHT-TCEEEEEECCHH
T ss_pred CH--------HHH----HHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence 64 222 3677777877654 899999999765
No 45
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.07 E-value=6.7e-11 Score=109.48 Aligned_cols=144 Identities=17% Similarity=0.244 Sum_probs=80.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCChh
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNGA 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~~ 186 (342)
.|+.+-. -+++|+++.|.||||||||||+..++ ...++..| .++++.+.- .++.+ +..+.+.+.+.+.
T Consensus 18 vl~~vsl-~i~~Ge~~~llGpnGsGKSTLLr~ia--Gl~~p~~G-----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (359)
T 2yyz_A 18 AVDGVSF-EVKDGEFVALLGPSGCGKTTTLLMLA--GIYKPTSG-----EIYFDDVLVNDIPPKYREVGMVFQNYALYPH 89 (359)
T ss_dssp EEEEEEE-EECTTCEEEEECSTTSSHHHHHHHHH--TSSCCSEE-----EEEETTEECTTSCGGGTTEEEECSSCCCCTT
T ss_pred EEeeeEE-EEcCCCEEEEEcCCCchHHHHHHHHH--CCCCCCcc-----EEEECCEECCCCChhhCcEEEEecCcccCCC
Confidence 4566655 78999999999999999999999654 56655443 444443210 01100 0000111111111
Q ss_pred -hhhcceeEeecC---C----HHHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccC
Q 019381 187 -DVLENVAYARAY---N----TDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFS 236 (342)
Q Consensus 187 -~~~~~i~~~~~~---~----~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~ 236 (342)
++.+|+.+.... . .....++++.+ .+.....+|+++++|++++.++.
T Consensus 90 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~--- 166 (359)
T 2yyz_A 90 MTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA--- 166 (359)
T ss_dssp SCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH---
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH---
Confidence 222222221000 0 00111111111 12222378999999999998764
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 237 GRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 237 ~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..| ..+...|+++.++.++|+|+++|-..
T Consensus 167 -----~~r----~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 167 -----NLR----MIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp -----HHH----HHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred -----HHH----HHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 222 36777888888888999999999754
No 46
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.07 E-value=4.3e-10 Score=99.97 Aligned_cols=144 Identities=19% Similarity=0.298 Sum_probs=82.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC------------CCHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT------------FRPQRLLQI 177 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~------------~~~~rl~~~ 177 (342)
+.|+.+.. -+++|+++.|.||+|||||||+..++ ...++..| .+++++..- .+......+
T Consensus 20 ~vl~~vsl-~i~~Ge~~~liG~nGsGKSTLlk~l~--Gl~~p~~G-----~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1b0u_A 20 EVLKGVSL-QARAGDVISIIGSSGSGKSTFLRCIN--FLEKPSEG-----AIIVNGQNINLVRDKDGQLKVADKNQLRLL 91 (262)
T ss_dssp EEEEEEEE-EECTTCEEEEECCTTSSHHHHHHHHT--TSSCCSEE-----EEEETTEECCEEECTTSSEEESCHHHHHHH
T ss_pred EEEEeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----EEEECCEEccccccccccccccChhhHHHH
Confidence 34666665 79999999999999999999999654 55655443 556654321 122211222
Q ss_pred HHHcCC-------Chh-hhhcceeEee----cCCH----HHHHHHHHHH-----------------------HHHhHhcC
Q 019381 178 ADRYGL-------NGA-DVLENVAYAR----AYNT----DHQSRLLLEA-----------------------ASMMVETR 218 (342)
Q Consensus 178 ~~~~~~-------~~~-~~~~~i~~~~----~~~~----~~~~~~l~~l-----------------------~~~~~~~~ 218 (342)
.+..++ .+. ++.+++.+.. .... ....++++.+ .+.....+
T Consensus 92 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 171 (262)
T 1b0u_A 92 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171 (262)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 233322 111 2333333210 0111 1111122111 11122368
Q ss_pred ceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 219 FALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 219 ~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
|+++++|++++.++. .. ...+.+.|+.++++ +.|||+++|-..
T Consensus 172 p~lllLDEPts~LD~--------~~----~~~~~~~l~~l~~~-g~tvi~vtHd~~ 214 (262)
T 1b0u_A 172 PDVLLFDEPTSALDP--------EL----VGEVLRIMQQLAEE-GKTMVVVTHEMG 214 (262)
T ss_dssp CSEEEEESTTTTSCH--------HH----HHHHHHHHHHHHHT-TCCEEEECSCHH
T ss_pred CCEEEEeCCCccCCH--------HH----HHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 999999999998764 22 23677788888776 999999999754
No 47
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.06 E-value=1.3e-10 Score=107.58 Aligned_cols=142 Identities=18% Similarity=0.291 Sum_probs=79.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCCh
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNG 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~ 185 (342)
..|+.+-. -+++|+++.|.||+|||||||+..++ ...++..| .++++...- .++.+ +..+.+...+.+
T Consensus 17 ~vl~~vsl-~i~~Ge~~~llGpnGsGKSTLLr~ia--Gl~~p~~G-----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 88 (362)
T 2it1_A 17 TALNNINL-KIKDGEFMALLGPSGSGKSTLLYTIA--GIYKPTSG-----KIYFDEKDVTELPPKDRNVGLVFQNWALYP 88 (362)
T ss_dssp EEEEEEEE-EECTTCEEEEECCTTSSHHHHHHHHH--TSSCCSEE-----EEEETTEECTTSCGGGTTEEEECTTCCCCT
T ss_pred EEEEeeEE-EECCCCEEEEECCCCchHHHHHHHHh--cCCCCCce-----EEEECCEECCcCCHhHCcEEEEecCcccCC
Confidence 34666665 79999999999999999999999654 55555443 344433210 00000 000001111111
Q ss_pred h-hhhcceeEe--------------------------------ecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc
Q 019381 186 A-DVLENVAYA--------------------------------RAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 186 ~-~~~~~i~~~--------------------------------~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~ 232 (342)
. ++.+|+.+. ...+.- ..+.+.. +.....+|+++++|++++.++
T Consensus 89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGG-q~QRval--ArAL~~~P~lLLLDEP~s~LD 165 (362)
T 2it1_A 89 HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGG-QQQRVAI--ARALVKEPEVLLLDEPLSNLD 165 (362)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHH-HHHHHHH--HHHHTTCCSEEEEESGGGGSC
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHH-HHHHHHH--HHHHHcCCCEEEEECccccCC
Confidence 1 112222110 011111 1111111 222237899999999999876
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
. ..+ ..+...|+++.++.++|+|+++|-..
T Consensus 166 ~--------~~r----~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 166 A--------LLR----LEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp H--------HHH----HHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred H--------HHH----HHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 4 222 36778888888888999999999754
No 48
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.06 E-value=1e-10 Score=108.78 Aligned_cols=144 Identities=14% Similarity=0.232 Sum_probs=80.8
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCChh
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNGA 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~~ 186 (342)
.|+.+-. -+++|+++.|.||+|||||||+..++ ...++..| .++++...- .++.+ +..+.+.+.+.+.
T Consensus 26 vl~~vsl-~i~~Ge~~~llGpnGsGKSTLLr~ia--Gl~~p~~G-----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 97 (372)
T 1v43_A 26 AVNKLNL-TIKDGEFLVLLGPSGCGKTTTLRMIA--GLEEPTEG-----RIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 97 (372)
T ss_dssp EEEEEEE-EECTTCEEEEECCTTSSHHHHHHHHH--TSSCCSEE-----EEEETTEECTTSCGGGGTEEEEEC------C
T ss_pred EEeeeEE-EECCCCEEEEECCCCChHHHHHHHHH--cCCCCCce-----EEEECCEECCCCChhhCcEEEEecCcccCCC
Confidence 4666655 78999999999999999999999654 56655443 455544311 11100 0000111111111
Q ss_pred -hhhcceeEee---cCCHH----HHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccC
Q 019381 187 -DVLENVAYAR---AYNTD----HQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFS 236 (342)
Q Consensus 187 -~~~~~i~~~~---~~~~~----~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~ 236 (342)
++.+|+.+.. ..... ...++++.+ .+.....+|+++++|++++.++.
T Consensus 98 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~--- 174 (372)
T 1v43_A 98 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA--- 174 (372)
T ss_dssp CCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCH---
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH---
Confidence 2223332210 01111 111222211 12222378999999999998764
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 237 GRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 237 ~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..| .++...|+++.++.++|+|+++|-..
T Consensus 175 -----~~r----~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 175 -----KLR----VAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp -----HHH----HHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred -----HHH----HHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 222 36777888888888999999999754
No 49
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.06 E-value=7.7e-11 Score=108.70 Aligned_cols=144 Identities=16% Similarity=0.217 Sum_probs=82.7
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCChh
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNGA 186 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~~ 186 (342)
.|+.+-. -+++|+++.|.||+|||||||+..++ ...++..| .++++...- .++.+ +..+.+...+.+.
T Consensus 15 ~l~~vsl-~i~~Ge~~~llGpnGsGKSTLLr~ia--Gl~~p~~G-----~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 86 (348)
T 3d31_A 15 SLDNLSL-KVESGEYFVILGPTGAGKTLFLELIA--GFHVPDSG-----RILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86 (348)
T ss_dssp EEEEEEE-EECTTCEEEEECCCTHHHHHHHHHHH--TSSCCSEE-----EEEETTEECTTSCHHHHTCEEECTTCCCCTT
T ss_pred EEeeeEE-EEcCCCEEEEECCCCccHHHHHHHHH--cCCCCCCc-----EEEECCEECCCCchhhCcEEEEecCcccCCC
Confidence 4555555 78999999999999999999999654 56655443 555554321 11111 0000111111111
Q ss_pred -hhhcceeEee----cCCHHHHHHHHHHH----------------------HHHhHhcCceEEEEeccccccccccCCCc
Q 019381 187 -DVLENVAYAR----AYNTDHQSRLLLEA----------------------ASMMVETRFALMIVDSATALYRTDFSGRG 239 (342)
Q Consensus 187 -~~~~~i~~~~----~~~~~~~~~~l~~l----------------------~~~~~~~~~~lvviD~l~~l~~~~~~~~~ 239 (342)
++.+|+.+.. ........+.++.+ .+.....+|+++++|++++.++.
T Consensus 87 ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~------ 160 (348)
T 3d31_A 87 MNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP------ 160 (348)
T ss_dssp SCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH------
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH------
Confidence 2233332210 00011222222211 12222378999999999998764
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 240 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 240 ~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+ ..+...|+++.++.++|+|+++|-..
T Consensus 161 --~~~----~~l~~~l~~l~~~~g~tii~vTHd~~ 189 (348)
T 3d31_A 161 --RTQ----ENAREMLSVLHKKNKLTVLHITHDQT 189 (348)
T ss_dssp --HHH----HHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred --HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 222 36777888888888999999999754
No 50
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.05 E-value=1.4e-10 Score=107.18 Aligned_cols=142 Identities=19% Similarity=0.303 Sum_probs=79.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHH--HHHHHHHcCCCh
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQR--LLQIADRYGLNG 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~r--l~~~~~~~~~~~ 185 (342)
..|+.+.. -+++|+++.|.||||||||||+..++ ...++..| .++++.+.- .++.+ +..+.+...+.+
T Consensus 29 ~vl~~vsl-~i~~Ge~~~llGpnGsGKSTLLr~ia--Gl~~p~~G-----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 100 (355)
T 1z47_A 29 RSVRGVSF-QIREGEMVGLLGPSGSGKTTILRLIA--GLERPTKG-----DVWIGGKRVTDLPPQKRNVGLVFQNYALFQ 100 (355)
T ss_dssp TCEEEEEE-EEETTCEEEEECSTTSSHHHHHHHHH--TSSCCSEE-----EEEETTEECTTCCGGGSSEEEECGGGCCCT
T ss_pred EEEeeeEE-EECCCCEEEEECCCCCcHHHHHHHHh--CCCCCCcc-----EEEECCEECCcCChhhCcEEEEecCcccCC
Confidence 45666666 78999999999999999999999654 56655443 334433210 00000 000001111111
Q ss_pred h-hhhcceeEe--------------------------------ecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc
Q 019381 186 A-DVLENVAYA--------------------------------RAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 186 ~-~~~~~i~~~--------------------------------~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~ 232 (342)
. ++.+|+.+. ...+.- ..+.+.. +.....+|+++++|++++.++
T Consensus 101 ~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGG-q~QRval--ArAL~~~P~lLLLDEP~s~LD 177 (355)
T 1z47_A 101 HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGG-QQQRVAL--ARALAPRPQVLLFDEPFAAID 177 (355)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHH-HHHHHHH--HHHHTTCCSEEEEESTTCCSS
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHH-HHHHHHH--HHHHHcCCCEEEEeCCcccCC
Confidence 0 111221110 011111 1111121 222237899999999999776
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 233 TDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 233 ~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
. ..+ .++...|+++.++.++|+|+++|-..
T Consensus 178 ~--------~~r----~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 178 T--------QIR----RELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp H--------HHH----HHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred H--------HHH----HHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 3 222 36777888888888999999999754
No 51
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.05 E-value=5.6e-11 Score=109.98 Aligned_cols=47 Identities=11% Similarity=0.185 Sum_probs=38.0
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+|+++++|++++.++... ..++...|+++.++.++|+|+++|-..
T Consensus 156 ~~~P~lLLLDEP~s~LD~~~------------r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDARM------------RDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp TTCCSEEEEESTTTTSCGGG------------HHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HhCCCEEEEECCcccCCHHH------------HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 37899999999999877532 136778888888888999999999754
No 52
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.04 E-value=3.1e-10 Score=101.77 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=81.8
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC----CCHHHHHH----HHHHc
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT----FRPQRLLQ----IADRY 181 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~----~~~~rl~~----~~~~~ 181 (342)
..|+.+-. -+++|+++.|.||+|||||||+..++ ...++..| .++++...- .+...++. +.+..
T Consensus 35 ~vL~~isl-~i~~Ge~~~liG~NGsGKSTLlk~l~--Gl~~p~~G-----~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~ 106 (279)
T 2ihy_A 35 TILKKISW-QIAKGDKWILYGLNGAGKTTLLNILN--AYEPATSG-----TVNLFGKMPGKVGYSAETVRQHIGFVSHSL 106 (279)
T ss_dssp EEEEEEEE-EEETTCEEEEECCTTSSHHHHHHHHT--TSSCCSEE-----EEEETTBCCC---CCHHHHHTTEEEECHHH
T ss_pred EEEEeeeE-EEcCCCEEEEECCCCCcHHHHHHHHh--CCCCCCCe-----EEEECCEEcccccCCHHHHcCcEEEEEcCc
Confidence 35666665 79999999999999999999999654 55655443 566665431 11211111 01111
Q ss_pred C--CCh-hhhhcceeEee--------cCCH---HHHHHHHHHH----------------------HHHhHhcCceEEEEe
Q 019381 182 G--LNG-ADVLENVAYAR--------AYNT---DHQSRLLLEA----------------------ASMMVETRFALMIVD 225 (342)
Q Consensus 182 ~--~~~-~~~~~~i~~~~--------~~~~---~~~~~~l~~l----------------------~~~~~~~~~~lvviD 225 (342)
. ... -++.+++.+.. .... ....++++.+ .+.....+|+++++|
T Consensus 107 ~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLD 186 (279)
T 2ihy_A 107 LEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILD 186 (279)
T ss_dssp HTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred ccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 0 111 02333332210 0111 1112222211 122223789999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEE--EEEecccc
Q 019381 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAV--VITNQVVA 274 (342)
Q Consensus 226 ~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~v--i~~~h~~~ 274 (342)
++++.++. ..+ ..+.+.|++++++ +.+| |+++|-..
T Consensus 187 EPts~LD~--------~~~----~~l~~~l~~l~~~-g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 187 EPAAGLDF--------IAR----ESLLSILDSLSDS-YPTLAMIYVTHFIE 224 (279)
T ss_dssp STTTTCCH--------HHH----HHHHHHHHHHHHH-CTTCEEEEEESCGG
T ss_pred CCccccCH--------HHH----HHHHHHHHHHHHC-CCEEEEEEEecCHH
Confidence 99998764 222 3677788888777 8889 99999765
No 53
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.03 E-value=2e-10 Score=101.25 Aligned_cols=140 Identities=15% Similarity=0.204 Sum_probs=79.4
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL---- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~---- 183 (342)
..|+.+.. -+++|+++.|.||+|||||||+..++ ...++. | .++++...- .+.. .+.+..++
T Consensus 14 ~vl~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~l~--Gl~~p~-G-----~i~~~g~~~~~~~~~---~~~~~i~~v~q~ 81 (249)
T 2qi9_C 14 TRLGPLSG-EVRAGEILHLVGPNGAGKSTLLARMA--GMTSGK-G-----SIQFAGQPLEAWSAT---KLALHRAYLSQQ 81 (249)
T ss_dssp TTEEEEEE-EEETTCEEEEECCTTSSHHHHHHHHT--TSSCCE-E-----EEEETTEEGGGSCHH---HHHHHEEEECSC
T ss_pred EEEeeeEE-EEcCCCEEEEECCCCCcHHHHHHHHh--CCCCCC-e-----EEEECCEECCcCCHH---HHhceEEEECCC
Confidence 34555555 78999999999999999999999654 555544 4 555554321 1121 11222221
Q ss_pred ---Chh-hhhcceeEeecC--CHHHHHHHHHHH----------------------HHHhHhcCce-------EEEEeccc
Q 019381 184 ---NGA-DVLENVAYARAY--NTDHQSRLLLEA----------------------ASMMVETRFA-------LMIVDSAT 228 (342)
Q Consensus 184 ---~~~-~~~~~i~~~~~~--~~~~~~~~l~~l----------------------~~~~~~~~~~-------lvviD~l~ 228 (342)
.+. .+.+++.+.... ......+.++.+ .+.....+|+ ++++|+++
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPt 161 (249)
T 2qi9_C 82 QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 161 (249)
T ss_dssp CCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTT
T ss_pred CccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCc
Confidence 111 223333221100 111122222211 1111124577 99999999
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 229 ALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 229 ~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.++. ..+ ..+.+.|+.++++ +.+||+++|-..
T Consensus 162 s~LD~--------~~~----~~l~~~l~~l~~~-g~tviivtHd~~ 194 (249)
T 2qi9_C 162 NSLDV--------AQQ----SALDKILSALSQQ-GLAIVMSSHDLN 194 (249)
T ss_dssp TTCCH--------HHH----HHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred ccCCH--------HHH----HHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 98764 222 3677788888776 999999999754
No 54
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.03 E-value=1.3e-10 Score=108.20 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=37.5
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+|+++++|++++.++. ..| ..+...|+++.++.++|+|+++|-..
T Consensus 155 ~~~P~lLLLDEP~s~LD~--------~~r----~~l~~~l~~l~~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDA--------KLR----VRMRAELKKLQRQLGVTTIYVTHDQV 201 (372)
T ss_dssp HTCCSEEEEECTTTTSCH--------HHH----HHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred hcCCCEEEECCCCccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 378999999999998764 222 36777888888888999999999654
No 55
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.02 E-value=4.5e-10 Score=98.96 Aligned_cols=140 Identities=19% Similarity=0.296 Sum_probs=80.8
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL---- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~---- 183 (342)
..|+.+.. -+++|+++.|.|++|||||||+..++ ...++..| .++++...- .+... +.+.+++
T Consensus 23 ~vl~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G-----~I~i~g~~~~~~~~~~---~~~~i~~v~Q~ 91 (247)
T 2ff7_A 23 VILDNINL-SIKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENG-----QVLIDGHDLALADPNW---LRRQVGVVLQD 91 (247)
T ss_dssp EEEEEEEE-EEETTCEEEEECSTTSSHHHHHHHHT--TSSCCSEE-----EEEETTEETTTSCHHH---HHHHEEEECSS
T ss_pred ceeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc-----EEEECCEEhhhCCHHH---HHhcEEEEeCC
Confidence 34666665 79999999999999999999999654 55555433 566665321 12222 2222221
Q ss_pred ---ChhhhhcceeEeec-CCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEec
Q 019381 184 ---NGADVLENVAYARA-YNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVDS 226 (342)
Q Consensus 184 ---~~~~~~~~i~~~~~-~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD~ 226 (342)
.+.++.+|+.+... .+.....+.++.+ .+.....+|+++++|+
T Consensus 92 ~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDE 171 (247)
T 2ff7_A 92 NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 171 (247)
T ss_dssp CCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred CccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11133444433211 1111121111110 1111236799999999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 227 ATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 227 l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++.++. ..+ ..+++.|+.+. + +.|||+++|-..
T Consensus 172 Pts~LD~--------~~~----~~i~~~l~~~~-~-g~tviivtH~~~ 205 (247)
T 2ff7_A 172 ATSALDY--------ESE----HVIMRNMHKIC-K-GRTVIIIAHRLS 205 (247)
T ss_dssp CCSCCCH--------HHH----HHHHHHHHHHH-T-TSEEEEECSSGG
T ss_pred CcccCCH--------HHH----HHHHHHHHHHc-C-CCEEEEEeCCHH
Confidence 9998764 222 36677777773 3 899999999754
No 56
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.99 E-value=1.8e-10 Score=104.41 Aligned_cols=140 Identities=17% Similarity=0.287 Sum_probs=80.2
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCCC-
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGLN- 184 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~- 184 (342)
+.+.|+.+.. -+++|+++.|+||+|||||||+..++ ...++..| .+++++.. ..+... +.+.+++-
T Consensus 66 ~~~vL~~isl-~i~~Ge~vaivG~sGsGKSTLl~ll~--gl~~p~~G-----~I~i~G~~i~~~~~~~---~r~~i~~v~ 134 (306)
T 3nh6_A 66 GRETLQDVSF-TVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSG-----CIRIDGQDISQVTQAS---LRSHIGVVP 134 (306)
T ss_dssp TCEEEEEEEE-EECTTCEEEEESSSCHHHHHHHHHHT--TSSCCSEE-----EEEETTEETTSBCHHH---HHHTEEEEC
T ss_pred CCceeeeeeE-EEcCCCEEEEECCCCchHHHHHHHHH--cCCCCCCc-----EEEECCEEcccCCHHH---HhcceEEEe
Confidence 4455777666 79999999999999999999999653 55554433 56666542 112222 22222211
Q ss_pred ------hhhhhcceeEeec-CCHHHHHH-----------------------------------HHHHHHHHhHhcCceEE
Q 019381 185 ------GADVLENVAYARA-YNTDHQSR-----------------------------------LLLEAASMMVETRFALM 222 (342)
Q Consensus 185 ------~~~~~~~i~~~~~-~~~~~~~~-----------------------------------~l~~l~~~~~~~~~~lv 222 (342)
..++.+|+.+... .+...... .+..++++ ..+++++
T Consensus 135 Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL--~~~p~iL 212 (306)
T 3nh6_A 135 QDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTI--LKAPGII 212 (306)
T ss_dssp SSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHH--HHCCSEE
T ss_pred cCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHH--HhCCCEE
Confidence 1133334333221 11111111 11111222 2679999
Q ss_pred EEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 223 IVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 223 viD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
|+|++++.++.. .+ ..+...|+.+.+ +.|+|+++|-..
T Consensus 213 lLDEPts~LD~~-------~~-----~~i~~~l~~l~~--~~Tvi~itH~l~ 250 (306)
T 3nh6_A 213 LLDEATSALDTS-------NE-----RAIQASLAKVCA--NRTTIVVAHRLS 250 (306)
T ss_dssp EEECCSSCCCHH-------HH-----HHHHHHHHHHHT--TSEEEEECCSHH
T ss_pred EEECCcccCCHH-------HH-----HHHHHHHHHHcC--CCEEEEEEcChH
Confidence 999999987642 11 256666776653 689999998654
No 57
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.99 E-value=4.5e-10 Score=98.58 Aligned_cols=140 Identities=15% Similarity=0.179 Sum_probs=79.9
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHH-cCC----
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADR-YGL---- 183 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~-~~~---- 183 (342)
.|+.+.. -+++|+++.|.||+|||||||+..++ ...++..| .+++++..- .+... ..+. .++
T Consensus 21 vl~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~~G-----~i~~~g~~~~~~~~~~---~~~~~i~~v~q~ 89 (240)
T 1ji0_A 21 AIKGIDL-KVPRGQIVTLIGANGAGKTTTLSAIA--GLVRAQKG-----KIIFNGQDITNKPAHV---INRMGIALVPEG 89 (240)
T ss_dssp EEEEEEE-EEETTCEEEEECSTTSSHHHHHHHHT--TSSCCSEE-----EEEETTEECTTCCHHH---HHHTTEEEECSS
T ss_pred EEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCc-----eEEECCEECCCCCHHH---HHhCCEEEEecC
Confidence 4566555 78999999999999999999999654 55555443 556654321 11211 1111 211
Q ss_pred ---Chh-hhhcceeEee----cCCH--HHHHHHHHHH-----------------------HHHhHhcCceEEEEeccccc
Q 019381 184 ---NGA-DVLENVAYAR----AYNT--DHQSRLLLEA-----------------------ASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 184 ---~~~-~~~~~i~~~~----~~~~--~~~~~~l~~l-----------------------~~~~~~~~~~lvviD~l~~l 230 (342)
.+. ++.+|+.+.. .... ....++++.+ .+.....+|+++++|++++.
T Consensus 90 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~ 169 (240)
T 1ji0_A 90 RRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLG 169 (240)
T ss_dssp CCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTT
T ss_pred CccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 111 2333333221 0000 1111121111 11122368999999999998
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 231 YRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 231 ~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++. ..+ ..+.+.|+++++ .+.+||+++|-..
T Consensus 170 LD~--------~~~----~~l~~~l~~~~~-~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 170 LAP--------ILV----SEVFEVIQKINQ-EGTTILLVEQNAL 200 (240)
T ss_dssp CCH--------HHH----HHHHHHHHHHHH-TTCCEEEEESCHH
T ss_pred CCH--------HHH----HHHHHHHHHHHH-CCCEEEEEecCHH
Confidence 764 222 367777888766 5899999999754
No 58
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.99 E-value=3.5e-10 Score=101.00 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=81.9
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL---- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~---- 183 (342)
+.|+.+.. -+++|+++.|.|++|||||||+..++ ...++..| .++++...- .+.. .+.+.+++
T Consensus 33 ~vl~~vsl-~i~~Ge~~~i~G~nGsGKSTLlk~l~--Gl~~p~~G-----~I~~~g~~i~~~~~~---~~~~~i~~v~Q~ 101 (271)
T 2ixe_A 33 QVLQGLTF-TLYPGKVTALVGPNGSGKSTVAALLQ--NLYQPTGG-----KVLLDGEPLVQYDHH---YLHTQVAAVGQE 101 (271)
T ss_dssp CCEEEEEE-EECTTCEEEEECSTTSSHHHHHHHHT--TSSCCSEE-----EEEETTEEGGGBCHH---HHHHHEEEECSS
T ss_pred eeeEeeEE-EECCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCC-----EEEECCEEcccCCHH---HHhccEEEEecC
Confidence 35666666 79999999999999999999999654 55555443 566654321 1121 12222221
Q ss_pred ---ChhhhhcceeEeec-CCH-HHH---------HHHHHHH------------------------HHHhHhcCceEEEEe
Q 019381 184 ---NGADVLENVAYARA-YNT-DHQ---------SRLLLEA------------------------ASMMVETRFALMIVD 225 (342)
Q Consensus 184 ---~~~~~~~~i~~~~~-~~~-~~~---------~~~l~~l------------------------~~~~~~~~~~lvviD 225 (342)
.+.++.+|+.+... ... ... .+.++.+ .+.....+|+++++|
T Consensus 102 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD 181 (271)
T 2ixe_A 102 PLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181 (271)
T ss_dssp CCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11133344332111 000 100 0111100 111223689999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 226 ~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++++.++. ..+ ..+++.|+.++++.+.|||+++|-..
T Consensus 182 EPts~LD~--------~~~----~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 182 NATSALDA--------GNQ----LRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp STTTTCCH--------HHH----HHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred CCccCCCH--------HHH----HHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 99998764 222 36777788877666899999999754
No 59
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.98 E-value=8.1e-09 Score=91.92 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=36.1
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+|+++++|++++.++. .. ...+.+.|++++++ +.|||+++|-..
T Consensus 154 ~~~p~lllLDEPts~LD~--------~~----~~~l~~~l~~l~~~-g~tii~vtHd~~ 199 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDR--------EG----KTDLLRIVEKWKTL-GKTVILISHDIE 199 (266)
T ss_dssp TTCCSEEEEESTTTTCCH--------HH----HHHHHHHHHHHHHT-TCEEEEECSCCT
T ss_pred HcCCCEEEEcCccccCCH--------HH----HHHHHHHHHHHHHc-CCEEEEEeCCHH
Confidence 378999999999998764 22 23677788888777 999999999754
No 60
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.98 E-value=4.1e-09 Score=93.07 Aligned_cols=143 Identities=18% Similarity=0.160 Sum_probs=81.3
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC--CCceEEEecCCCC----CHH-H---------
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG--EGKAMYIDAEGTF----RPQ-R--------- 173 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~--~~~vl~i~~e~~~----~~~-r--------- 173 (342)
+.|+.+-. -+++|+++.|.||+|||||||+..++ ...++..|.- ...+.|+.-+..+ +.. .
T Consensus 19 ~vl~~isl-~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 95 (253)
T 2nq2_C 19 FLFQQLNF-DLNKGDILAVLGQNGCGKSTLLDLLL--GIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHI 95 (253)
T ss_dssp EEEEEEEE-EEETTCEEEEECCSSSSHHHHHHHHT--TSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGS
T ss_pred eEEEEEEE-EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhc
Confidence 34666655 78999999999999999999999654 5565554421 2335555433221 111 1
Q ss_pred -------------HHHHHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcc
Q 019381 174 -------------LLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240 (342)
Q Consensus 174 -------------l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~ 240 (342)
+.++++.+++. ...++ .....+.- ..+.+..+.++ ..+|+++++|++++.++.
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~--~~~~LSgG-q~qrv~lAraL--~~~p~lllLDEPts~LD~------- 161 (253)
T 2nq2_C 96 NTFAKPKSHDYQVAMQALDYLNLT--HLAKR--EFTSLSGG-QRQLILIARAI--ASECKLILLDEPTSALDL------- 161 (253)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTCG--GGTTS--BGGGSCHH-HHHHHHHHHHH--HTTCSEEEESSSSTTSCH-------
T ss_pred ccccCCCHHHHHHHHHHHHHcCCh--HHhcC--ChhhCCHH-HHHHHHHHHHH--HcCCCEEEEeCCcccCCH-------
Confidence 11111111111 00000 01111111 11222222222 378999999999998764
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 241 ~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+ ..+.+.|+.++++.+.|||+++|-..
T Consensus 162 -~~~----~~l~~~l~~l~~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 162 -ANQ----DIVLSLLIDLAQSQNMTVVFTTHQPN 190 (253)
T ss_dssp -HHH----HHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred -HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 222 36777888887777999999999755
No 61
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.97 E-value=5e-10 Score=98.47 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=32.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+.. -+++|+++.|.||+|||||||+..++ ...++..|
T Consensus 16 ~vl~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G 57 (243)
T 1mv5_A 16 QILRDISF-EAQPNSIIAFAGPSGGGKSTIFSLLE--RFYQPTAG 57 (243)
T ss_dssp CSEEEEEE-EECTTEEEEEECCTTSSHHHHHHHHT--TSSCCSBS
T ss_pred ceEEEeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc
Confidence 34666655 79999999999999999999999654 55555444
No 62
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.96 E-value=1.8e-10 Score=101.06 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=37.2
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+|+++++|++++.++. ..+ ..+.+.|+.++++.+.|||+++|-..
T Consensus 142 ~~~p~lllLDEPts~LD~--------~~~----~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDL--------KTK----GVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp TTCCSSBEEESTTSSCCH--------HHH----HHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred HcCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 378999999999998764 222 36778888888878999999999754
No 63
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.96 E-value=3.5e-09 Score=91.10 Aligned_cols=147 Identities=23% Similarity=0.284 Sum_probs=80.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC---C-------CceEEEecCCCC----CH-HHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG---E-------GKAMYIDAEGTF----RP-QRL 174 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~---~-------~~vl~i~~e~~~----~~-~rl 174 (342)
..|+.+-. -+++|+++.|.||+|||||||+..++ ...++..|.- + ..+.|+.-+..+ +. +.+
T Consensus 23 ~il~~vsl-~i~~Ge~~~iiG~NGsGKSTLlk~l~--Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl 99 (214)
T 1sgw_A 23 PVLERITM-TIEKGNVVNFHGPNGIGKTTLLKTIS--TYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYL 99 (214)
T ss_dssp EEEEEEEE-EEETTCCEEEECCTTSSHHHHHHHHT--TSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHH
T ss_pred eEEeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHH
Confidence 44666555 78999999999999999999999654 5555544410 1 124455433221 11 111
Q ss_pred HHHHHHcC--CCh---hhhhcceeEee------cCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHH
Q 019381 175 LQIADRYG--LNG---ADVLENVAYAR------AYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSA 243 (342)
Q Consensus 175 ~~~~~~~~--~~~---~~~~~~i~~~~------~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~ 243 (342)
.......+ ... .++++.+.+.. ..+. ...+.+..+. ....+|+++++|++++.++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSg-Gqkqrv~lar--aL~~~p~lllLDEPts~LD~~~-------- 168 (214)
T 1sgw_A 100 KAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQ-GTIRRVQLAS--TLLVNAEIYVLDDPVVAIDEDS-------- 168 (214)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCH-HHHHHHHHHH--HTTSCCSEEEEESTTTTSCTTT--------
T ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCH-HHHHHHHHHH--HHHhCCCEEEEECCCcCCCHHH--------
Confidence 11111111 111 11222111111 1111 1122222222 2237899999999999877532
Q ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 244 RQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 244 r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
...+.+.|++++++ +.+||+++|-...
T Consensus 169 ----~~~l~~~l~~~~~~-g~tiiivtHd~~~ 195 (214)
T 1sgw_A 169 ----KHKVLKSILEILKE-KGIVIISSREELS 195 (214)
T ss_dssp ----HHHHHHHHHHHHHH-HSEEEEEESSCCT
T ss_pred ----HHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 13677778877665 8899999997653
No 64
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.87 E-value=1e-09 Score=94.83 Aligned_cols=143 Identities=17% Similarity=0.114 Sum_probs=86.6
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNT 200 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (342)
.+|.++.++|++|+||||++++++..... .+.+|+++..+.... -...++.+++.... .+.+ ...
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~------~g~kVli~~~~~d~r--~~~~i~srlG~~~~----~~~~---~~~ 74 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY------ADVKYLVFKPKIDTR--SIRNIQSRTGTSLP----SVEV---ESA 74 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEEECCCGG--GCSSCCCCCCCSSC----CEEE---SST
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEEeccCch--HHHHHHHhcCCCcc----cccc---CCH
Confidence 56899999999999999999999887765 467899997654311 11123333443221 1111 122
Q ss_pred HHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCc
Q 019381 201 DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSA 280 (342)
Q Consensus 201 ~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~ 280 (342)
. +++..+...+...++++|+||+++.+.. +++..+..+++. +++||++.|..+ +.+.
T Consensus 75 ~---~i~~~i~~~~~~~~~dvViIDEaQ~l~~-----------------~~ve~l~~L~~~-gi~Vil~Gl~~d-f~~~- 131 (223)
T 2b8t_A 75 P---EILNYIMSNSFNDETKVIGIDEVQFFDD-----------------RICEVANILAEN-GFVVIISGLDKN-FKGE- 131 (223)
T ss_dssp H---HHHHHHHSTTSCTTCCEEEECSGGGSCT-----------------HHHHHHHHHHHT-TCEEEEECCSBC-TTSS-
T ss_pred H---HHHHHHHHHhhCCCCCEEEEecCccCcH-----------------HHHHHHHHHHhC-CCeEEEEecccc-ccCC-
Confidence 2 2333333333334689999999987521 344556666764 999999998775 2221
Q ss_pred ccCCCCccccCccccccccceEEEEEee
Q 019381 281 IFAGPQIKPIGGNIMAHASTTRLALRKG 308 (342)
Q Consensus 281 ~~~~~~~~p~~g~~~~~~~d~~l~l~~~ 308 (342)
.|. +...+...+|.+..|...
T Consensus 132 ~F~-------~~~~Ll~lAD~V~el~~i 152 (223)
T 2b8t_A 132 PFG-------PIAKLFTYADKITKLTAI 152 (223)
T ss_dssp BCT-------THHHHHHHCSEEEECCEE
T ss_pred cCC-------CcHHHHHHhheEeeccee
Confidence 331 123455577887776643
No 65
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.86 E-value=4.3e-09 Score=104.03 Aligned_cols=140 Identities=17% Similarity=0.334 Sum_probs=80.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC--CCHHHHHHHHHHcCC----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT--FRPQRLLQIADRYGL---- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~--~~~~rl~~~~~~~~~---- 183 (342)
+.|+.+-. -+++|+++.|.||+|||||||+..++ ...++..| .+++++..- .+... +.+..++
T Consensus 357 ~~l~~i~l-~i~~G~~~~ivG~sGsGKSTll~~l~--g~~~p~~G-----~i~~~g~~~~~~~~~~---~~~~i~~v~Q~ 425 (582)
T 3b5x_A 357 PALSHVSF-SIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSG-----SICLDGHDVRDYKLTN---LRRHFALVSQN 425 (582)
T ss_pred cccccceE-EECCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCC-----EEEECCEEhhhCCHHH---HhcCeEEEcCC
Confidence 45666665 79999999999999999999999654 45555443 556655321 11111 1111211
Q ss_pred ---ChhhhhcceeEee--cCCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEe
Q 019381 184 ---NGADVLENVAYAR--AYNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVD 225 (342)
Q Consensus 184 ---~~~~~~~~i~~~~--~~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD 225 (342)
.+.++.+|+.+.. ..+.++..+.++.+ .+.....+|+++++|
T Consensus 426 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlD 505 (582)
T 3b5x_A 426 VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILD 505 (582)
T ss_pred CccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 1123445554432 11222222221110 111122689999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 226 ~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++++.++.. .+ ..+.+.|+++.+ +.|+|+++|-..
T Consensus 506 Epts~LD~~--------~~----~~i~~~l~~~~~--~~tvi~itH~~~ 540 (582)
T 3b5x_A 506 EATSALDTE--------SE----RAIQAALDELQK--NKTVLVIAHRLS 540 (582)
T ss_pred CccccCCHH--------HH----HHHHHHHHHHcC--CCEEEEEecCHH
Confidence 999987642 11 256666776643 899999998644
No 66
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.82 E-value=2.2e-08 Score=88.23 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=28.2
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+.. -+++|+++.|.|++|||||||+..++
T Consensus 18 vl~~vsl-~i~~Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 18 ILKGVNL-VVPKGEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEEEEEE-EEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEeceEE-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555 78999999999999999999999765
No 67
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.81 E-value=3.1e-09 Score=94.30 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=28.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.|+.+-. -+++|+++.|.||+|||||||+..++
T Consensus 35 vl~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 35 TLKSINF-FIPSGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp SEEEEEE-EECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeEeeEE-EECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4666655 79999999999999999999999654
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.81 E-value=1.2e-08 Score=84.65 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=36.2
Q ss_pred hcCceEEEEeccccccccccCCCc----chHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRG----ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~----~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+|+++++|++++.++.....+. ...--......+...|+.+.++ |.++|+++|-..
T Consensus 99 ~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~ 160 (171)
T 4gp7_A 99 HCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPE 160 (171)
T ss_dssp TCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHH
T ss_pred CCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHH
Confidence 367999999999987653210000 0000011234666777777777 999999999765
No 69
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.77 E-value=2.1e-09 Score=100.58 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=37.4
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
...|+.+-. -+++|+++.|.||+|||||||+..++ ...+ ..| .++++..
T Consensus 34 ~~~L~~vsl-~i~~Ge~~~llGpsGsGKSTLLr~ia--Gl~~-~~G-----~I~i~G~ 82 (390)
T 3gd7_A 34 NAILENISF-SISPGQRVGLLGRTGSGKSTLLSAFL--RLLN-TEG-----EIQIDGV 82 (390)
T ss_dssp CCSEEEEEE-EECTTCEEEEEESTTSSHHHHHHHHH--TCSE-EEE-----EEEESSC
T ss_pred eEEeeceeE-EEcCCCEEEEECCCCChHHHHHHHHh--CCCC-CCe-----EEEECCE
Confidence 456777776 79999999999999999999999765 4444 333 5666654
No 70
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.77 E-value=5e-09 Score=103.60 Aligned_cols=140 Identities=19% Similarity=0.314 Sum_probs=79.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCC----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGL---- 183 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~---- 183 (342)
+.|+.+-. -+++|+++.|.||+|||||||+..++ ...++..| .+++++.. ..+...+ .+..++
T Consensus 357 ~~l~~v~~-~i~~G~~~~ivG~sGsGKSTLl~~l~--g~~~p~~G-----~i~~~g~~~~~~~~~~~---~~~i~~v~Q~ 425 (582)
T 3b60_A 357 PALRNINL-KIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEG-----HILMDGHDLREYTLASL---RNQVALVSQN 425 (582)
T ss_dssp CSEEEEEE-EECTTCEEEEEECTTSSHHHHHHHHT--TTTCCSEE-----EEEETTEETTTBCHHHH---HHTEEEECSS
T ss_pred ccccceeE-EEcCCCEEEEECCCCCCHHHHHHHHh--hccCCCCC-----eEEECCEEccccCHHHH---HhhCeEEccC
Confidence 34555555 78999999999999999999999654 45554433 56665532 1122221 122221
Q ss_pred ---ChhhhhcceeEee--cCCHHHHHHHHHHH---------------------------------HHHhHhcCceEEEEe
Q 019381 184 ---NGADVLENVAYAR--AYNTDHQSRLLLEA---------------------------------ASMMVETRFALMIVD 225 (342)
Q Consensus 184 ---~~~~~~~~i~~~~--~~~~~~~~~~l~~l---------------------------------~~~~~~~~~~lvviD 225 (342)
.+.++.+|+.+.. ..+.++..+.++.+ .+.....+|+++++|
T Consensus 426 ~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD 505 (582)
T 3b60_A 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD 505 (582)
T ss_dssp CCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1113334443321 11222222221100 111122689999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 226 ~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
++++.++.. .+ ..+.+.|+++.+ +.|+|+++|-..
T Consensus 506 Epts~LD~~--------~~----~~i~~~l~~~~~--~~tvi~itH~~~ 540 (582)
T 3b60_A 506 EATSALDTE--------SE----RAIQAALDELQK--NRTSLVIAHRLS 540 (582)
T ss_dssp TTTSSCCHH--------HH----HHHHHHHHHHHT--TSEEEEECSCGG
T ss_pred CccccCCHH--------HH----HHHHHHHHHHhC--CCEEEEEeccHH
Confidence 999987642 11 256666776653 899999998654
No 71
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.76 E-value=6.4e-09 Score=103.08 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=35.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+-- -+++|+++.|.||+|||||||+..++ ...++..| .+++++.
T Consensus 359 vl~~isl-~i~~G~~~~ivG~sGsGKSTLl~~l~--g~~~p~~G-----~i~~~g~ 406 (595)
T 2yl4_A 359 IFQDFSL-SIPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASG-----TISLDGH 406 (595)
T ss_dssp EEEEEEE-EECTTCEEEEECCTTSSSTHHHHHHT--TSSCCSEE-----EEEETTE
T ss_pred cccceEE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCcCCCCc-----EEEECCE
Confidence 4555555 78999999999999999999999654 55554433 5556543
No 72
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.75 E-value=5.9e-08 Score=94.70 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=79.2
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC---CCCceEEEecCCCCC-HHHHHHHHHHcC--C---C---hhh
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG---GEGKAMYIDAEGTFR-PQRLLQIADRYG--L---N---GAD 187 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~---~~~~vl~i~~e~~~~-~~rl~~~~~~~~--~---~---~~~ 187 (342)
+++|+++.|.|++|||||||+..++ ...++..|. .+..+-|+..+.... ...+.+...... . . .++
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~--Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILV--GEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT--TSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 6899999999999999999999654 666666552 133455554331110 001111111111 0 0 011
Q ss_pred hhcceeE-------eecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 019381 188 VLENVAY-------ARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLAD 260 (342)
Q Consensus 188 ~~~~i~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~ 260 (342)
+++.+.+ ....+.-+. +.+.. +.....+|+++++|++++.++. ..+ ..+++.|+++++
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~-QRv~i--AraL~~~p~lLlLDEPT~gLD~--------~~~----~~i~~~l~~l~~ 433 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGEL-QKLYI--AATLAKEADLYVLDQPSSYLDV--------EER----YIVAKAIKRVTR 433 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHH-HHHHH--HHHHHSCCSEEEEESTTTTCCH--------HHH----HHHHHHHHHHHH
T ss_pred HHHHcCCHHHhcCChhhCCHHHH-HHHHH--HHHHHcCCCEEEEeCCccCCCH--------HHH----HHHHHHHHHHHH
Confidence 2222111 111122111 22222 2223478999999999998764 222 378888999998
Q ss_pred HhCCEEEEEecccc
Q 019381 261 EFGVAVVITNQVVA 274 (342)
Q Consensus 261 ~~~~~vi~~~h~~~ 274 (342)
+.+.|||+++|-..
T Consensus 434 ~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 434 ERKAVTFIIDHDLS 447 (538)
T ss_dssp HTTCEEEEECSCHH
T ss_pred hCCCEEEEEeCCHH
Confidence 88999999999765
No 73
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.75 E-value=3.8e-09 Score=93.81 Aligned_cols=39 Identities=33% Similarity=0.348 Sum_probs=29.9
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
.|+.+-. -++ |+++.|.||+|||||||+..++ ... +..|
T Consensus 20 il~~vsl-~i~-Ge~~~i~G~NGsGKSTLlk~l~--Gl~-p~~G 58 (263)
T 2pjz_A 20 SLENINL-EVN-GEKVIILGPNGSGKTTLLRAIS--GLL-PYSG 58 (263)
T ss_dssp EEEEEEE-EEC-SSEEEEECCTTSSHHHHHHHHT--TSS-CCEE
T ss_pred eEEeeeE-EEC-CEEEEEECCCCCCHHHHHHHHh--CCC-CCCc
Confidence 4555555 789 9999999999999999999654 444 4433
No 74
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.75 E-value=1.3e-07 Score=93.62 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=79.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC--CCceEEEecCCC----CCHHHHHHHH--HHcCCC--hhhhh
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG--EGKAMYIDAEGT----FRPQRLLQIA--DRYGLN--GADVL 189 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~--~~~vl~i~~e~~----~~~~rl~~~~--~~~~~~--~~~~~ 189 (342)
+++|+++.|.|++|||||||+..++ ...++..|.- ...+-|+.-+.. ++........ ..+... ..+++
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~--Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 456 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLA--GVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL 456 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH--TSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHh--cCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 5789999999999999999999654 6666665532 345667654422 1221111110 000000 01122
Q ss_pred cceeE-------eecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 019381 190 ENVAY-------ARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF 262 (342)
Q Consensus 190 ~~i~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~ 262 (342)
+.+.+ +...+.-+. +.+.. +.....+++++++|++++.++. ..+ ..+.+.|++++++.
T Consensus 457 ~~~~l~~~~~~~~~~LSGGe~-QRv~i--AraL~~~p~lLlLDEPt~~LD~--------~~~----~~l~~~l~~l~~~~ 521 (607)
T 3bk7_A 457 KPLGIIDLYDRNVEDLSGGEL-QRVAI--AATLLRDADIYLLDEPSAYLDV--------EQR----LAVSRAIRHLMEKN 521 (607)
T ss_dssp HHHTCTTTTTSBGGGCCHHHH-HHHHH--HHHHTSCCSEEEEECTTTTCCH--------HHH----HHHHHHHHHHHHHT
T ss_pred HHcCCchHhcCChhhCCHHHH-HHHHH--HHHHHhCCCEEEEeCCccCCCH--------HHH----HHHHHHHHHHHHhC
Confidence 11111 111222211 12222 2223478999999999998763 222 37788888888888
Q ss_pred CCEEEEEecccc
Q 019381 263 GVAVVITNQVVA 274 (342)
Q Consensus 263 ~~~vi~~~h~~~ 274 (342)
+.|||+++|-..
T Consensus 522 g~tvi~vsHd~~ 533 (607)
T 3bk7_A 522 EKTALVVEHDVL 533 (607)
T ss_dssp TCEEEEECSCHH
T ss_pred CCEEEEEeCCHH
Confidence 999999999754
No 75
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.74 E-value=8.4e-09 Score=102.02 Aligned_cols=140 Identities=20% Similarity=0.287 Sum_probs=80.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCC-----
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLN----- 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~----- 184 (342)
+.|+.+-- -+++|+++.|.||+|||||||+..++ ...++..| .+++++..- .......+.++.++-
T Consensus 357 ~~l~~isl-~i~~Ge~~~ivG~sGsGKSTll~~l~--g~~~~~~G-----~i~i~g~~i-~~~~~~~~r~~i~~v~Q~~~ 427 (587)
T 3qf4_A 357 PVLSGVNF-SVKPGSLVAVLGETGSGKSTLMNLIP--RLIDPERG-----RVEVDELDV-RTVKLKDLRGHISAVPQETV 427 (587)
T ss_dssp CSEEEEEE-EECTTCEEEEECSSSSSHHHHHHTTT--TSSCCSEE-----EEEESSSBG-GGBCHHHHHHHEEEECSSCC
T ss_pred cceeceEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCccCCCc-----EEEECCEEc-ccCCHHHHHhheEEECCCCc
Confidence 35666555 78999999999999999999999543 55554433 677766531 111111222333221
Q ss_pred --hhhhhcceeEeec-CCHHHHHH-----------------------------------HHHHHHHHhHhcCceEEEEec
Q 019381 185 --GADVLENVAYARA-YNTDHQSR-----------------------------------LLLEAASMMVETRFALMIVDS 226 (342)
Q Consensus 185 --~~~~~~~i~~~~~-~~~~~~~~-----------------------------------~l~~l~~~~~~~~~~lvviD~ 226 (342)
..++.+|+.+... .+.++..+ .+.-+++ .-.+|+++++|+
T Consensus 428 lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARa--l~~~p~illlDE 505 (587)
T 3qf4_A 428 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA--LVKKPKVLILDD 505 (587)
T ss_dssp CCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHH--HHTCCSEEEEES
T ss_pred CcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHH--HHcCCCEEEEEC
Confidence 1133344433221 11222111 1111122 226899999999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 227 ATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 227 l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++.++.. .+ ..+.+.|+++. .+.|+|+++|--.
T Consensus 506 pts~LD~~-------~~-----~~i~~~l~~~~--~~~tvi~itH~l~ 539 (587)
T 3qf4_A 506 CTSSVDPI-------TE-----KRILDGLKRYT--KGCTTFIITQKIP 539 (587)
T ss_dssp CCTTSCHH-------HH-----HHHHHHHHHHS--TTCEEEEEESCHH
T ss_pred CcccCCHH-------HH-----HHHHHHHHHhC--CCCEEEEEecChH
Confidence 99987642 21 25556666653 3899999999754
No 76
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.74 E-value=1.4e-09 Score=94.70 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=33.1
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+-. -+++|+++.|.||+|||||||+..++ ...++..|
T Consensus 22 ~il~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G 63 (229)
T 2pze_A 22 PVLKDINF-KIERGQLLAVAGSTGAGKTSLLMMIM--GELEPSEG 63 (229)
T ss_dssp CSEEEEEE-EEETTCEEEEECCTTSSHHHHHHHHT--TSSCCSEE
T ss_pred eeeeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCcCCcc
Confidence 45666666 79999999999999999999999654 55555544
No 77
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.74 E-value=9.9e-08 Score=93.22 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=80.2
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC--CCceEEEecCCC----CCHHHHHHHH--HHcCCC--hhhhh
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG--EGKAMYIDAEGT----FRPQRLLQIA--DRYGLN--GADVL 189 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~--~~~vl~i~~e~~----~~~~rl~~~~--~~~~~~--~~~~~ 189 (342)
+++|+++.|.|++|||||||+..++ ...++..|.- ...+.|+.-+.. ++........ ..+... ..+++
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~--Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 386 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLA--GVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL 386 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH--TSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 5789999999999999999999654 6666665532 235667754432 1221111111 111100 01222
Q ss_pred cceeEe-------ecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 019381 190 ENVAYA-------RAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF 262 (342)
Q Consensus 190 ~~i~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~ 262 (342)
+.+.+. ...+.-+. +.+.. +.....+++++++|+++..++. .. ...+.+.|++++++.
T Consensus 387 ~~~~l~~~~~~~~~~LSGGe~-qrv~l--AraL~~~p~lLlLDEPt~~LD~--------~~----~~~i~~~l~~l~~~~ 451 (538)
T 1yqt_A 387 KPLGIIDLYDREVNELSGGEL-QRVAI--AATLLRDADIYLLDEPSAYLDV--------EQ----RLAVSRAIRHLMEKN 451 (538)
T ss_dssp TTTTCGGGTTSBGGGCCHHHH-HHHHH--HHHHTSCCSEEEEECTTTTCCH--------HH----HHHHHHHHHHHHHHH
T ss_pred HHcCChhhhcCChhhCCHHHH-HHHHH--HHHHHhCCCEEEEeCCcccCCH--------HH----HHHHHHHHHHHHHhC
Confidence 222211 11122111 11222 2223478999999999998763 22 237888888888888
Q ss_pred CCEEEEEecccc
Q 019381 263 GVAVVITNQVVA 274 (342)
Q Consensus 263 ~~~vi~~~h~~~ 274 (342)
+.+||+++|-..
T Consensus 452 g~tvi~vsHd~~ 463 (538)
T 1yqt_A 452 EKTALVVEHDVL 463 (538)
T ss_dssp TCEEEEECSCHH
T ss_pred CCEEEEEeCCHH
Confidence 999999999755
No 78
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.73 E-value=1.4e-09 Score=95.11 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=32.9
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
+.|+.+.. -+++|+++.|.||+|||||||+..++ ...++..|
T Consensus 19 ~vl~~vsl-~i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G 60 (237)
T 2cbz_A 19 PTLNGITF-SIPEGALVAVVGQVGCGKSSLLSALL--AEMDKVEG 60 (237)
T ss_dssp CSEEEEEE-EECTTCEEEEECSTTSSHHHHHHHHT--TCSEEEEE
T ss_pred ceeeeeEE-EECCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCc
Confidence 35666666 79999999999999999999999654 55555444
No 79
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.73 E-value=5.2e-09 Score=103.75 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=36.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
+.|+.+-- -+++|+++.|.||+|||||||+..++ ...++..| .+++++.
T Consensus 369 ~~l~~isl-~i~~G~~~~ivG~sGsGKSTll~~l~--g~~~p~~G-----~i~~~g~ 417 (598)
T 3qf4_B 369 PVLKDITF-HIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRG-----QILVDGI 417 (598)
T ss_dssp CSCCSEEE-ECCTTCEEEEECCTTSSTTHHHHHHT--TSSCCSEE-----EEEETTE
T ss_pred ccccceEE-EEcCCCEEEEECCCCCcHHHHHHHHh--cCcCCCCe-----EEEECCE
Confidence 34555555 68999999999999999999999653 55554433 5666653
No 80
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.6e-07 Score=92.80 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=78.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC--CCceEEEecCCC--C--CHHHHHHHHHHcCC---Chh--
Q 019381 118 GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG--EGKAMYIDAEGT--F--RPQRLLQIADRYGL---NGA-- 186 (342)
Q Consensus 118 GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~--~~~vl~i~~e~~--~--~~~rl~~~~~~~~~---~~~-- 186 (342)
|-+..|+++.|.|++|||||||+..++ ...++..|.. ..++.|+.-... + +... .+...+.. ...
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~--Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e--~~~~~~~~~~~~~~~~ 448 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLA--GALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ--LFFKKIRGQFLNPQFQ 448 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHH--TSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHH--HHHHHCSSTTTSHHHH
T ss_pred CccccceEEEEECCCCCcHHHHHHHHh--cCCCCCCCcCccCCcEEEecccccccCCccHHH--HHHHHhhcccccHHHH
Confidence 457777999999999999999999654 6666665521 224555543311 1 1111 11111110 110
Q ss_pred -hhhccee-------EeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHH
Q 019381 187 -DVLENVA-------YARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKL 258 (342)
Q Consensus 187 -~~~~~i~-------~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~l 258 (342)
++++.+. .....+.-+. +.+.. +.....+|+++++|++++.++. ..+ ..+++.|+++
T Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGqk-QRv~i--AraL~~~p~lLlLDEPT~gLD~--------~~~----~~i~~ll~~l 513 (608)
T 3j16_B 449 TDVVKPLRIDDIIDQEVQHLSGGEL-QRVAI--VLALGIPADIYLIDEPSAYLDS--------EQR----IICSKVIRRF 513 (608)
T ss_dssp HHTHHHHTSTTTSSSBSSSCCHHHH-HHHHH--HHHTTSCCSEEEECCTTTTCCH--------HHH----HHHHHHHHHH
T ss_pred HHHHHHcCChhhhcCChhhCCHHHH-HHHHH--HHHHHhCCCEEEEECCCCCCCH--------HHH----HHHHHHHHHH
Confidence 1111110 1111222221 11221 2233478999999999998763 222 3778888988
Q ss_pred HHHhCCEEEEEecccc
Q 019381 259 ADEFGVAVVITNQVVA 274 (342)
Q Consensus 259 a~~~~~~vi~~~h~~~ 274 (342)
+++.+.|||+++|-..
T Consensus 514 ~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 514 ILHNKKTAFIVEHDFI 529 (608)
T ss_dssp HHHHTCEEEEECSCHH
T ss_pred HHhCCCEEEEEeCCHH
Confidence 8888999999999765
No 81
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.72 E-value=8.3e-09 Score=91.88 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=29.0
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
..|+.+-. -+++|+++.|.||+|||||||+..++
T Consensus 34 ~vl~~vsl-~i~~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 34 AILRGLSL-DVHPGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEEEEEEE-EECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEeeEE-EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35666665 79999999999999999999999765
No 82
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.71 E-value=8.7e-08 Score=93.63 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=35.8
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+|+++++|++++.++. .. ...++..|+++++ .++|||+++|-..
T Consensus 174 ~~~P~lLlLDEPTs~LD~--------~~----~~~l~~~L~~l~~-~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 174 LRNATFYFFDEPSSYLDI--------RQ----RLNAARAIRRLSE-EGKSVLVVEHDLA 219 (538)
T ss_dssp HSCCSEEEEESTTTTCCH--------HH----HHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred hcCCCEEEEECCcccCCH--------HH----HHHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 378999999999998764 22 2367778888876 4999999999654
No 83
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.66 E-value=1.4e-08 Score=100.21 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=35.9
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
+.|+.+-- -+++|+++.|.||+|||||||+..++ ...++..| .+++++.
T Consensus 355 ~~l~~isl-~i~~G~~~~ivG~sGsGKSTll~~l~--g~~~p~~G-----~i~~~g~ 403 (578)
T 4a82_A 355 PILKDINL-SIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSG-----QILIDGH 403 (578)
T ss_dssp CSEEEEEE-EECTTCEEEEECSTTSSHHHHHTTTT--TSSCCSEE-----EEEETTE
T ss_pred cceeeeEE-EECCCCEEEEECCCCChHHHHHHHHh--cCCCCCCc-----EEEECCE
Confidence 34666655 78999999999999999999999543 55554433 5666553
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.62 E-value=8.9e-08 Score=79.71 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=32.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.+++|+.+.|+||||+|||||+..++...... .+..++|++..
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-----~g~~~~~~~~~ 76 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK-----KGIRGYFFDTK 76 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH-----SCCCCCEEEHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHH-----cCCeEEEEEHH
Confidence 45678999999999999999999887655311 24567887654
No 85
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.61 E-value=2.3e-07 Score=91.69 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=35.8
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+|+++++|++++.++. ..+ ..+++.|++++++ +.+||+++|-..
T Consensus 244 ~~~P~lLlLDEPTs~LD~--------~~~----~~l~~~L~~l~~~-g~tvIivsHdl~ 289 (607)
T 3bk7_A 244 LRKAHFYFFDEPSSYLDI--------RQR----LKVARVIRRLANE-GKAVLVVEHDLA 289 (607)
T ss_dssp HSCCSEEEEECTTTTCCH--------HHH----HHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred hcCCCEEEEECCcccCCH--------HHH----HHHHHHHHHHHhc-CCEEEEEecChH
Confidence 378999999999998764 222 3677788888764 999999999644
No 86
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.61 E-value=2.8e-07 Score=74.48 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=32.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+|+.+.|+|++|+|||+|+..++..... .+.+++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~------~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE------AGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT------TTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh------cCCcEEEEcHHH
Confidence 8999999999999999999987754432 245689998764
No 87
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.58 E-value=2.1e-08 Score=107.63 Aligned_cols=138 Identities=17% Similarity=0.272 Sum_probs=80.7
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCCCh--
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGLNG-- 185 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~~-- 185 (342)
+.|+.+.- -+++|+.+.|+|++|||||||+..+. ....+..| .++||+.+ .++...++ +++++-+
T Consensus 1093 ~VL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~lL~--rl~~p~~G-----~I~iDG~di~~i~~~~lR---~~i~~V~Qd 1161 (1321)
T 4f4c_A 1093 EILKGLSF-SVEPGQTLALVGPSGCGKSTVVALLE--RFYDTLGG-----EIFIDGSEIKTLNPEHTR---SQIAIVSQE 1161 (1321)
T ss_dssp CSEEEEEE-EECTTCEEEEECSTTSSTTSHHHHHT--TSSCCSSS-----EEEETTEETTTBCHHHHH---TTEEEECSS
T ss_pred ccccceeE-EECCCCEEEEECCCCChHHHHHHHHh--cCccCCCC-----EEEECCEEhhhCCHHHHH---hheEEECCC
Confidence 45666666 79999999999999999999999553 44444433 67777642 22333322 2222211
Q ss_pred -----hhhhcceeEee---cCCHHHHH-----------------------------------HHHHHHHHHhHhcCceEE
Q 019381 186 -----ADVLENVAYAR---AYNTDHQS-----------------------------------RLLLEAASMMVETRFALM 222 (342)
Q Consensus 186 -----~~~~~~i~~~~---~~~~~~~~-----------------------------------~~l~~l~~~~~~~~~~lv 222 (342)
.++.+|+.+.. ..+.+++. +.+..+++++ .+++++
T Consensus 1162 p~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll--r~~~IL 1239 (1321)
T 4f4c_A 1162 PTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV--RNPKIL 1239 (1321)
T ss_dssp CCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH--SCCSEE
T ss_pred CEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH--hCCCEE
Confidence 12334443321 11222222 2233333333 679999
Q ss_pred EEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 223 IVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 223 viD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
|+|+.++.++.+ .++ .+.+.|+++. .++|+|+++|--.
T Consensus 1240 iLDEaTSaLD~~-------tE~-----~Iq~~l~~~~--~~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1240 LLDEATSALDTE-------SEK-----VVQEALDRAR--EGRTCIVIAHRLN 1277 (1321)
T ss_dssp EEESCCCSTTSH-------HHH-----HHHHHHTTTS--SSSEEEEECSSSS
T ss_pred EEeCccccCCHH-------HHH-----HHHHHHHHHc--CCCEEEEeccCHH
Confidence 999999987653 222 3445555443 3899999999543
No 88
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.53 E-value=4e-07 Score=89.97 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=34.9
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+++++++|++++.++. ..+ ..+.+.|+++.++ +.+||+++|-..
T Consensus 237 ~~~p~llllDEPts~LD~--------~~~----~~l~~~l~~l~~~-g~tvi~vtHdl~ 282 (608)
T 3j16_B 237 VQEADVYMFDEPSSYLDV--------KQR----LNAAQIIRSLLAP-TKYVICVEHDLS 282 (608)
T ss_dssp HSCCSEEEEECTTTTCCH--------HHH----HHHHHHHHGGGTT-TCEEEEECSCHH
T ss_pred HhCCCEEEEECcccCCCH--------HHH----HHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 378999999999998763 222 3667777777655 889999999754
No 89
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.53 E-value=2.5e-07 Score=83.14 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=36.9
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC--CCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG--GEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~--~~~~vl~i~~e 166 (342)
.|+.+-. -+++|+++.|.|++|||||||+..++ ...++..|. .++.+.|+.-+
T Consensus 53 vl~~isl-~i~~Ge~~~i~G~NGsGKSTLlk~l~--Gl~~p~~G~I~~~g~i~~v~Q~ 107 (290)
T 2bbs_A 53 VLKDINF-KIERGQLLAVAGSTGAGKTSLLMMIM--GELEPSEGKIKHSGRISFCSQN 107 (290)
T ss_dssp SEEEEEE-EECTTCEEEEEESTTSSHHHHHHHHT--TSSCEEEEEEECCSCEEEECSS
T ss_pred EEEeeEE-EEcCCCEEEEECCCCCcHHHHHHHHh--cCCCCCCcEEEECCEEEEEeCC
Confidence 4555555 78999999999999999999999654 555555441 12245565444
No 90
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.53 E-value=4.7e-07 Score=88.33 Aligned_cols=45 Identities=9% Similarity=0.197 Sum_probs=34.0
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..+|+++++|++++.++. .. ...+.+.|+++.+ +.+||+++|-..
T Consensus 154 ~~~p~illlDEPts~LD~--------~~----~~~l~~~l~~l~~--g~tii~vsHdl~ 198 (538)
T 3ozx_A 154 LREADVYIFDQPSSYLDV--------RE----RMNMAKAIRELLK--NKYVIVVDHDLI 198 (538)
T ss_dssp HSCCSEEEEESTTTTCCH--------HH----HHHHHHHHHHHCT--TSEEEEECSCHH
T ss_pred HcCCCEEEEECCcccCCH--------HH----HHHHHHHHHHHhC--CCEEEEEEeChH
Confidence 378999999999998763 22 2366677777753 899999999754
No 91
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.51 E-value=9.3e-08 Score=102.71 Aligned_cols=138 Identities=15% Similarity=0.188 Sum_probs=81.1
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC--CCCHHHHHHHHHHcCCC---
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG--TFRPQRLLQIADRYGLN--- 184 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~--- 184 (342)
+.|+.+-- -+++|+++.|+|++|||||||+..+. ...++.. +.+++++.. .++...+ .++.++-
T Consensus 432 ~vL~~isl-~i~~G~~vaivG~sGsGKSTll~ll~--~~~~~~~-----G~I~idG~~i~~~~~~~l---r~~i~~v~Q~ 500 (1321)
T 4f4c_A 432 PILRGMNL-RVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLK-----GKITIDGVDVRDINLEFL---RKNVAVVSQE 500 (1321)
T ss_dssp CSEEEEEE-EECTTCEEEEEECSSSCHHHHHHHHT--TSSCCSE-----EEEEETTEETTTSCHHHH---HHHEEEECSS
T ss_pred ceeeceEE-eecCCcEEEEEecCCCcHHHHHHHhc--ccccccc-----CcccCCCccchhccHHHH---hhcccccCCc
Confidence 44666666 79999999999999999999998654 4444333 366666531 1233222 2233221
Q ss_pred ----hhhhhcceeEeec-CCHHHHHHHH-----------------------------------HHHHHHhHhcCceEEEE
Q 019381 185 ----GADVLENVAYARA-YNTDHQSRLL-----------------------------------LEAASMMVETRFALMIV 224 (342)
Q Consensus 185 ----~~~~~~~i~~~~~-~~~~~~~~~l-----------------------------------~~l~~~~~~~~~~lvvi 224 (342)
..++.+|+.+..+ .+.+++.+.+ ..+++. -.+++++++
T Consensus 501 ~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl--~~~~~IliL 578 (1321)
T 4f4c_A 501 PALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL--VRNPKILLL 578 (1321)
T ss_dssp CCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH--TTCCSEEEE
T ss_pred ceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH--ccCCCEEEE
Confidence 1234455544432 2333333222 222222 267999999
Q ss_pred eccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 225 DSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 225 D~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
|++++.++.+. ++ .+.+.|+.+.+ +.|+|+++|--.
T Consensus 579 DE~tSaLD~~t-------e~-----~i~~~l~~~~~--~~T~iiiaHrls 614 (1321)
T 4f4c_A 579 DEATSALDAES-------EG-----IVQQALDKAAK--GRTTIIIAHRLS 614 (1321)
T ss_dssp ESTTTTSCTTT-------HH-----HHHHHHHHHHT--TSEEEEECSCTT
T ss_pred ecccccCCHHH-------HH-----HHHHHHHHHhC--CCEEEEEcccHH
Confidence 99999887531 11 44555555543 788888888654
No 92
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.46 E-value=1.5e-07 Score=100.92 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=36.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
+.|+.+-. -+++|+++.|+|++|||||||+..++ ...++..| .+++++.
T Consensus 404 ~vL~~isl-~i~~G~~~~ivG~sGsGKSTl~~ll~--g~~~~~~G-----~i~i~g~ 452 (1284)
T 3g5u_A 404 QILKGLNL-KVKSGQTVALVGNSGCGKSTTVQLMQ--RLYDPLDG-----MVSIDGQ 452 (1284)
T ss_dssp CSEEEEEE-EECTTCEEEEECCSSSSHHHHHHHTT--TSSCCSEE-----EEEETTE
T ss_pred cceecceE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCe-----EEEECCE
Confidence 35666666 79999999999999999999999543 45544433 6666653
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.43 E-value=2e-06 Score=88.72 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=77.0
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccC-CCCCCCCCceEEEecCC-----CCC------------HH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLP-LDQGGGEGKAMYIDAEG-----TFR------------PQ 172 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~-~~~g~~~~~vl~i~~e~-----~~~------------~~ 172 (342)
.|+.+.. -+++|+++.|.|++|||||||+..++. +... .+.. ...+..|+..+. .++ ..
T Consensus 450 iL~~vsl-~I~~Ge~v~LiGpNGsGKSTLLk~Lag-G~i~g~~~~-~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~ 526 (986)
T 2iw3_A 450 LLNKTQL-RLKRARRYGICGPNGCGKSTLMRAIAN-GQVDGFPTQ-EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE 526 (986)
T ss_dssp EEEEEEE-EEETTCEEEEECSTTSSHHHHHHHHHH-TCSTTCCCT-TTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHH
T ss_pred eEecceE-EEcCCCEEEEECCCCCCHHHHHHHHhC-CCcCCCccc-cceeEEEEcccccccccCCcHHHHHHHhhcCHHH
Confidence 4555555 689999999999999999999998763 2211 0000 112345543221 111 22
Q ss_pred HHHHHHHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHH
Q 019381 173 RLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFL 252 (342)
Q Consensus 173 rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~ 252 (342)
++.++++.+++..+. .++ .....+.-+ .+.+..+..+ ..+++++++|++++.++. ..+ ..+.
T Consensus 527 ~v~~~L~~lgL~~~~-~~~--~~~~LSGGq-kQRvaLArAL--~~~P~lLLLDEPTs~LD~--------~~~----~~l~ 588 (986)
T 2iw3_A 527 AIKDKLIEFGFTDEM-IAM--PISALSGGW-KMKLALARAV--LRNADILLLDEPTNHLDT--------VNV----AWLV 588 (986)
T ss_dssp HHHHHHHHTTCCHHH-HHS--BGGGCCHHH-HHHHHHHHHH--HTTCSEEEEESTTTTCCH--------HHH----HHHH
T ss_pred HHHHHHHHcCCChhh-hcC--CcccCCHHH-HHHHHHHHHH--hcCCCEEEEECCccCCCH--------HHH----HHHH
Confidence 334445555553211 111 111222222 1222222222 378999999999998764 222 2555
Q ss_pred HHHHHHHHHhCCEEEEEecccc
Q 019381 253 RSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 253 ~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+.|+. .+.+||+++|-..
T Consensus 589 ~~L~~----~g~tvIivSHdl~ 606 (986)
T 2iw3_A 589 NYLNT----CGITSITISHDSV 606 (986)
T ss_dssp HHHHH----SCSEEEEECSCHH
T ss_pred HHHHh----CCCEEEEEECCHH
Confidence 55554 5899999999755
No 94
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.40 E-value=1.4e-07 Score=101.13 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=34.5
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+.. -+++|+++.|+|++|||||||+..++ ...++..| .+++++.
T Consensus 1048 ~l~~vsl-~i~~Ge~v~ivG~sGsGKSTl~~~l~--g~~~p~~G-----~I~i~g~ 1095 (1284)
T 3g5u_A 1048 VLQGLSL-EVKKGQTLALVGSSGCGKSTVVQLLE--RFYDPMAG-----SVFLDGK 1095 (1284)
T ss_dssp SBSSCCE-EECSSSEEEEECSSSTTHHHHHHHHT--TSSCCSEE-----EEESSSS
T ss_pred eecceeE-EEcCCCEEEEECCCCCCHHHHHHHHh--cCcCCCCC-----EEEECCE
Confidence 4555555 68999999999999999999999654 45544433 4555543
No 95
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=2e-06 Score=80.21 Aligned_cols=120 Identities=18% Similarity=0.269 Sum_probs=72.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|+++..=++++||||||||.+|..+|...-. +.+.++...-+. .+
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~---------~f~~v~~s~l~s--------------------------k~ 222 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDC---------KFIRVSGAELVQ--------------------------KY 222 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTC---------EEEEEEGGGGSC--------------------------SS
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCC---------CceEEEhHHhhc--------------------------cc
Confidence 6666666999999999999999988866433 466666532111 00
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCC-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~-~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
-. +....+..+........|.+|+||++-++......+. +......+.+..++..+..+....++.||.++.-..
T Consensus 223 vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 223 IG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp TT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred cc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 01 1122233333444557799999999999876432222 112233445667777776665555666666654433
No 96
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.34 E-value=4.8e-07 Score=75.16 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=47.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQS 204 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (342)
++.|+|++|||||+|+.+++.. +.+++|++|+..++.+....+......-+.. -..+..+.+....
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----------~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~---w~tiE~p~~l~~~- 66 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----------APQVLYIATSQILDDEMAARIQHHKDGRPAH---WRTAECWRHLDTL- 66 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----------CSSEEEEECCCC------CHHHHHHHTSCTT---EEEECCSSCGGGT-
T ss_pred CEEEECCCCCcHHHHHHHHHhc----------CCCeEEEecCCCCCHHHHHHHHHHHhcCCCC---cEEEEcHhhHHHH-
Confidence 4789999999999999998743 2369999998766554333333221111111 1112222222221
Q ss_pred HHHHHHHHHhHhcCceEEEEecccccccc
Q 019381 205 RLLLEAASMMVETRFALMIVDSATALYRT 233 (342)
Q Consensus 205 ~~l~~l~~~~~~~~~~lvviD~l~~l~~~ 233 (342)
+.. . ..+.++|+||+++..+..
T Consensus 67 --l~~----~-~~~~~~VLvDclt~wl~n 88 (180)
T 1c9k_A 67 --ITA----D-LAPDDAILLECITTMVTN 88 (180)
T ss_dssp --SCT----T-SCTTCEEEEECHHHHHHH
T ss_pred --HHh----h-cccCCeEEEcCHHHHHHH
Confidence 110 0 122379999999988764
No 97
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.33 E-value=6.5e-06 Score=74.20 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=63.6
Q ss_pred cCChhhHhhhcCCCCC-------CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCH--HHHHHH
Q 019381 107 SGSRELDKILEGGVET-------GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP--QRLLQI 177 (342)
Q Consensus 107 tg~~~LD~~l~GGi~~-------G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~--~rl~~~ 177 (342)
.....|..+++++..+ +.++.++|++|+||||++..+|...+. .+++|++++.+..-+. ..++.+
T Consensus 75 ~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~------~g~~v~l~~~D~~r~~a~~ql~~~ 148 (297)
T 1j8m_F 75 IVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKK------KGFKVGLVGADVYRPAALEQLQQL 148 (297)
T ss_dssp HHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHH------TTCCEEEEECCCSSSHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEecCCCCHHHHHHHHHH
Confidence 3445555555543222 889999999999999999999876654 4678999998753222 223333
Q ss_pred HHHcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 178 ADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
.+..+++ +...........++..+...+...+.++||||.+..+
T Consensus 149 ~~~~~v~---------v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 149 GQQIGVP---------VYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHTCC---------EECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSC
T ss_pred hccCCeE---------EEecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence 4333332 2221111111122233333333356899999987654
No 98
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.30 E-value=6.7e-06 Score=78.62 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=31.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+.+|+++.|+|++||||||++..++..... .++.|++.+..
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~------~~G~V~l~g~D 330 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQ------QGKSVMLAAGD 330 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEECCC
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhh------cCCeEEEecCc
Confidence 3678999999999999999999988754432 24556665554
No 99
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.28 E-value=5.2e-06 Score=75.01 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=31.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.+++|+++.|.|++||||||++..++..... .+++|.+.+.+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~------~~g~V~l~g~d 137 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN------EGTKVLMAAGD 137 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEECCC
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEEeec
Confidence 4678999999999999999999988754432 24456655443
No 100
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=98.28 E-value=1e-06 Score=63.01 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhhccCCCCcHHHHHhh
Q 019381 34 SGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQ 98 (342)
Q Consensus 34 ~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (342)
+||+++.++.|++++|.|+.|++..++.+|++++|++...+.++.+..++...+.+.++.++++.
T Consensus 10 p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~~~~~~~~~ 74 (83)
T 2kz3_A 10 PGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEE 74 (83)
T ss_dssp TTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCCCCCCCCCC
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcCcHHHHHHH
Confidence 69999999999999999999999999999999999999999999999998888888888777653
No 101
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.28 E-value=2.3e-06 Score=85.94 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=33.7
Q ss_pred CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 218 ~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+|+++++|++++-++. .. ...+++.|++++++ +.|||+++|-..
T Consensus 564 ~p~llllDEPt~~LD~--------~~----~~~i~~~l~~l~~~-g~tvi~vtHd~~ 607 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHV--------DD----IARLLDVLHRLVDN-GDTVLVIEHNLD 607 (670)
T ss_dssp SCEEEEEESTTTTCCH--------HH----HHHHHHHHHHHHHT-TCEEEEECCCHH
T ss_pred CCcEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 3689999999998764 22 23677778888755 999999999765
No 102
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.27 E-value=3.4e-06 Score=86.98 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=29.9
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCC
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~ 153 (342)
|+.+.. -+++|+++.|.|++|||||||+..++ +..++..
T Consensus 689 L~dVSl-~I~~GeivaIiGpNGSGKSTLLklLa--Gll~P~s 727 (986)
T 2iw3_A 689 ITDINF-QCSLSSRIAVIGPNGAGKSTLINVLT--GELLPTS 727 (986)
T ss_dssp EEEEEE-EEETTCEEEECSCCCHHHHHHHHHHT--TSSCCSE
T ss_pred eeccEE-EEcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCc
Confidence 444444 58999999999999999999999654 5555443
No 103
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.27 E-value=1.3e-07 Score=80.84 Aligned_cols=33 Identities=33% Similarity=0.350 Sum_probs=26.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
++++|+++.|.||+|||||||+..++. . ++..|
T Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~G--l-~p~~G 50 (208)
T 3b85_A 18 AIDTNTIVFGLGPAGSGKTYLAMAKAV--Q-ALQSK 50 (208)
T ss_dssp HHHHCSEEEEECCTTSSTTHHHHHHHH--H-HHHTT
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhc--C-CCcCC
Confidence 468899999999999999999997653 3 44444
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.27 E-value=1.5e-06 Score=72.69 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=63.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHH--HHHHHHcCCChhhhhcceeEeecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRL--LQIADRYGLNGADVLENVAYARAYN 199 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl--~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (342)
+|.++.++|++|+||||++++++..... .+.+++++....+ . |. ..+..+.+... ..+ ...+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~------~g~~v~~~~~~~d--~-r~~~~~i~s~~g~~~----~~~---~~~~ 65 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL------GKKKVAVFKPKID--S-RYHSTMIVSHSGNGV----EAH---VIER 65 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH------TTCEEEEEEEC--------CCCEECC----CE----ECE---EESS
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeeccc--c-ccCcccEEecCCCce----eeE---EECC
Confidence 4789999999999999999998877654 3567888865532 1 10 00000111110 011 1111
Q ss_pred HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 200 TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 200 ~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
... ++. .+. .+.++|+||+++.+.. .+...|+.++.+ ++.|+++.+...
T Consensus 66 ~~~---~~~----~~~-~~~dvviIDE~Q~~~~-----------------~~~~~l~~l~~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 66 PEE---MRK----YIE-EDTRGVFIDEVQFFNP-----------------SLFEVVKDLLDR-GIDVFCAGLDLT 114 (184)
T ss_dssp GGG---GGG----GCC-TTEEEEEECCGGGSCT-----------------THHHHHHHHHHT-TCEEEEEEESBC
T ss_pred HHH---HHH----Hhc-CCCCEEEEECcccCCH-----------------HHHHHHHHHHHC-CCCEEEEeeccc
Confidence 111 111 111 3579999999987521 344566767766 999998877543
No 105
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.27 E-value=9.8e-06 Score=74.01 Aligned_cols=57 Identities=19% Similarity=0.064 Sum_probs=39.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC--CHHHHHHHHHHcC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF--RPQRLLQIADRYG 182 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~--~~~rl~~~~~~~~ 182 (342)
-++|+++.|.|++||||||++..++..... .+++|.+.+.+-.- ....++.+.++.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~------~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN------HGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh------cCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 468999999999999999999988754432 34567777655311 1234455555555
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.26 E-value=1.9e-06 Score=86.45 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLC 140 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~ 140 (342)
..|+.+.. -+++|+++.|.||+|||||||+
T Consensus 32 ~~L~~vsl-~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDV-EIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEE-EEETTSEEEEECSTTSSHHHHH
T ss_pred cceeccEE-EECCCCEEEEECCCCCCHHHHh
Confidence 45777766 7999999999999999999996
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.26 E-value=1.6e-05 Score=71.86 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=29.7
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
+|+++.|.|++||||||++..++..... .+++|.+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~------~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN------LGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT------TTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEeec
Confidence 6899999999999999999988754432 24566666554
No 108
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.5e-06 Score=79.55 Aligned_cols=120 Identities=15% Similarity=0.273 Sum_probs=72.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|+++..=++++||||||||.++..+|...- .+.+.++...-+.. +
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~---------~~~~~v~~~~l~~~--------------------------~ 246 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK---------AAFIRVNGSEFVHK--------------------------Y 246 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT---------CEEEEEEGGGTCCS--------------------------S
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEecchhhcc--------------------------c
Confidence 677767799999999999999998886543 34666665421110 0
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCC-CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSG-RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~-~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
-. +....+..+........|.+++||++-++....... .+......+.+..++..+..+....++.||++++...
T Consensus 247 ~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 247 LG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred cc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 00 111223333334445779999999999887643211 1111223345667777777766666777776655443
No 109
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=5.1e-06 Score=78.58 Aligned_cols=123 Identities=18% Similarity=0.256 Sum_probs=72.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|+++..=++++||||||||.++..+|...-. +.++++...-++. +
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~---------~~~~v~~s~l~sk--------------------------~ 255 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGA---------NFIFSPASGIVDK--------------------------Y 255 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---------EEEEEEGGGTCCS--------------------------S
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---------CEEEEehhhhccc--------------------------c
Confidence 7777777999999999999999988866433 4666665421110 0
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCC-CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSG-RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 277 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~-~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~ 277 (342)
.. +....+..+........|.+|+||++-++...-..+ ........+.+..++..+..+....++.||+++.-....+
T Consensus 256 ~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 256 IG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp SS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred ch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 01 111223333344455789999999999987542221 1111223334555666665554445677776654444343
No 110
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.3e-06 Score=79.75 Aligned_cols=123 Identities=18% Similarity=0.251 Sum_probs=71.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|+++..=++++||||||||.++..+|...-. +.+.++...-.. .+
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~---------~f~~v~~s~l~~--------------------------~~ 255 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNA---------TFLKLAAPQLVQ--------------------------MY 255 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---------EEEEEEGGGGCS--------------------------SC
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCC---------CEEEEehhhhhh--------------------------cc
Confidence 7777777999999999999999988866433 466665532100 00
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCC-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 277 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~-~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~ 277 (342)
-. +....+..+........|.+|+||++-++......+. +......+.+..++..+..+....++.||.++......+
T Consensus 256 vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 256 IG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp SS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred cc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 00 1112233333444457799999999999876432211 111233334555666665555555677776654444343
No 111
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.21 E-value=6.7e-06 Score=73.30 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=64.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|+.++.-+.|+||||+|||+++..++... +.++++++...-... .
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---------~~~~~~v~~~~~~~~--------------------------~ 91 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---------NATFIRVVGSELVKK--------------------------F 91 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---------TCEEEEEEGGGGCCC--------------------------S
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---------CCCEEEEehHHHHHh--------------------------c
Confidence 56677779999999999999999887553 335777765321100 0
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCC-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~-~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.......+..+........+.+|+||++..+........ +........+..++..+..+....++.||++++...
T Consensus 92 -~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 92 -IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp -TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred -cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 001112222333334456789999999998864322111 011222222333333332222223566777765443
No 112
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=5.7e-06 Score=77.55 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=71.6
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeec
Q 019381 118 GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARA 197 (342)
Q Consensus 118 GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 197 (342)
.|+++..=++++||||||||.+|..+|...-. +.+.++...-+. .
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---------~fi~v~~s~l~s--------------------------k 255 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSA---------TFLRIVGSELIQ--------------------------K 255 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC---------EEEEEESGGGCC--------------------------S
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCC---------CEEEEEHHHhhh--------------------------c
Confidence 37777777999999999999999988866533 456665432100 0
Q ss_pred CCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCC-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 198 YNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 198 ~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~-~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
+-. +....+..+........|.+|+||++-++......+. +......+.+..++..+..+....++.||.++.-....
T Consensus 256 ~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 256 YLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp SSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred cCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 000 1122233333444557799999999999876432211 11122233455566666555444566666665444444
Q ss_pred C
Q 019381 277 D 277 (342)
Q Consensus 277 ~ 277 (342)
+
T Consensus 335 D 335 (437)
T 4b4t_I 335 D 335 (437)
T ss_dssp C
T ss_pred C
Confidence 3
No 113
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.20 E-value=1.8e-05 Score=71.53 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=55.6
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHH---HHHHHHHHcCCChhhhhcceeEee
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQ---RLLQIADRYGLNGADVLENVAYAR 196 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~---rl~~~~~~~~~~~~~~~~~i~~~~ 196 (342)
..+|+++.|+|++|+||||++..+|..... .+++|++++.+. +... .+..+++..+++ ++.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~------~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~---------~~~ 164 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVD------EGKSVVLAAADT-FRAAAIEQLKIWGERVGAT---------VIS 164 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEECT-TCHHHHHHHHHHHHHHTCE---------EEC
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHh------cCCEEEEEcccc-ccHHHHHHHHHHHHHcCCc---------EEe
Confidence 467899999999999999999999876553 356899988764 3332 223344443332 221
Q ss_pred cCCHHHHHHHHHHHHHHhHhcCceEEEEecccc
Q 019381 197 AYNTDHQSRLLLEAASMMVETRFALMIVDSATA 229 (342)
Q Consensus 197 ~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~ 229 (342)
..+.......+..........++++||||.+..
T Consensus 165 ~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 165 HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 111111111111111222346789999998764
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.19 E-value=1.8e-06 Score=79.77 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=61.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCCh-hhhhcceeEeecC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNG-ADVLENVAYARAY 198 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~-~~~~~~i~~~~~~ 198 (342)
..+|++++|+||+||||||++..++... ++.. ++.++.+.....+. ... ........+ ..
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~--~~~~---~~~i~t~ed~~e~~------------~~~~~~~v~q~~~--~~ 180 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL--NNTK---YHHILTIEDPIEFV------------HESKKCLVNQREV--HR 180 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHH--HHHC---CCEEEEEESSCCSC------------CCCSSSEEEEEEB--TT
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcc--cCCC---CcEEEEccCcHHhh------------hhccccceeeeee--cc
Confidence 3677899999999999999999765432 2221 23344333221110 000 000000000 00
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
....... ..+.....+|+++++|+++.. +.+..+..++. .|.+|++++|.....
T Consensus 181 ~~~~~~~----~La~aL~~~PdvillDEp~d~-------------------e~~~~~~~~~~-~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 181 DTLGFSE----ALRSALREDPDIILVGEMRDL-------------------ETIRLALTAAE-TGHLVFGTLHTTSAA 234 (356)
T ss_dssp TBSCHHH----HHHHHTTSCCSEEEESCCCSH-------------------HHHHHHHHHHH-TTCEEEEEESCSSHH
T ss_pred ccCCHHH----HHHHHhhhCcCEEecCCCCCH-------------------HHHHHHHHHHh-cCCEEEEEEccChHH
Confidence 1111112 223334588999999999731 23334444444 489999999987744
No 115
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=8.4e-06 Score=77.15 Aligned_cols=119 Identities=14% Similarity=0.204 Sum_probs=68.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|+++..=++|+||||||||.|+..+|...-. ..+.++...-+. .+
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~---------~fi~vs~s~L~s--------------------------k~ 283 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDA---------TFIRVIGSELVQ--------------------------KY 283 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---------EEEEEEGGGGCC--------------------------CS
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCC---------CeEEEEhHHhhc--------------------------cc
Confidence 7777777999999999999999988866533 466665432100 00
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCC-CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSG-RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~-~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
-. +....+..+........|.+|+||++-.+......+ .+......+.+..++..+..+....++.||.++.-.
T Consensus 284 vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 284 VG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp SS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred CC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc
Confidence 00 111223333344455779999999999987643221 122222333344555555444444456666655433
No 116
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.17 E-value=4.8e-06 Score=76.24 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=64.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
-+++|+++.|+|++|||||||+..++ ...++. .+.+.++....+. .. ...+.+.++..
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~--g~~~~~-----~g~i~i~~~~e~~------------~~--~~~~~i~~~~g- 224 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIM--EFIPKE-----ERIISIEDTEEIV------------FK--HHKNYTQLFFG- 224 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGG--GGSCTT-----SCEEEEESSCCCC------------CS--SCSSEEEEECB-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHh--CCCcCC-----CcEEEECCeeccc------------cc--cchhEEEEEeC-
Confidence 45789999999999999999999654 444443 3467776543211 10 01112333321
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
........+. .....+|+++++|+++.. ++...|+.+. ..+.++|+++|...
T Consensus 225 gg~~~r~~la----~aL~~~p~ilildE~~~~-------------------e~~~~l~~~~-~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 225 GNITSADCLK----SCLRMRPDRIILGELRSS-------------------EAYDFYNVLC-SGHKGTLTTLHAGS 276 (330)
T ss_dssp TTBCHHHHHH----HHTTSCCSEEEECCCCST-------------------HHHHHHHHHH-TTCCCEEEEEECSS
T ss_pred CChhHHHHHH----HHhhhCCCEEEEcCCChH-------------------HHHHHHHHHh-cCCCEEEEEEcccH
Confidence 1222222222 222478999999999861 2344555554 33567888889765
No 117
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.16 E-value=2e-05 Score=72.67 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.+++|+++.|.|++||||||++..++..... .+++|.+...+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~------~~G~V~l~g~D 194 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN------EGTKVLMAAGD 194 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEECCC
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccc------cCCEEEEeccc
Confidence 3678999999999999999999988754432 24456655543
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.14 E-value=3.1e-05 Score=73.21 Aligned_cols=93 Identities=23% Similarity=0.297 Sum_probs=55.9
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHH---HHHHHHHcCCChhhhhcceeEeecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQR---LLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~r---l~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
++.++.++|++|+||||++..+|..... .+.+|++++++. +.+.. +..+.+..+.+ +....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~------~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~---------~~~~~ 159 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK------RGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQ---------VYGEP 159 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH------TTCCEEEEEECC-SCHHHHHHHHHHHHTTTCC---------EECCT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEecCc-cchhHHHHHHHHHHhcCCc---------eeecc
Confidence 4789999999999999999999876654 467899998874 33322 23333333322 11111
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
.......+.......+...++++||||....+
T Consensus 160 ~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 160 NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCS
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCc
Confidence 11112222223333333457889999987643
No 119
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.12 E-value=4.9e-05 Score=71.86 Aligned_cols=93 Identities=24% Similarity=0.243 Sum_probs=56.9
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHH---HHHHHHHHcCCChhhhhcceeEeecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQ---RLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~---rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
++.++.++|++|+||||++..+|..... .+.+|++++++. +.+. .++.+.+..+. .++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~------~G~kVllv~~D~-~R~aa~eqL~~~~~~~gv---------pv~~~~ 162 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK------RGYKVGVVCSDT-WRPGAYHQLRQLLDRYHI---------EVFGNP 162 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEECCC-SSTHHHHHHHHHHGGGTC---------EEECCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCC-cchhHHHHHHHHHHhcCC---------cEEecC
Confidence 4679999999999999999999876654 467899999874 3332 22233332222 222221
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
........+......+...++++||||....+
T Consensus 163 ~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 163 QEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 11122233333333444567899999987654
No 120
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.11 E-value=4.6e-06 Score=73.73 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=28.8
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+.|+.+. +++|+++.|+||+||||||++..++..
T Consensus 15 ~vl~~i~---i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 15 DKVLELC---HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp THHHHGG---GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHHh---hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 4566665 899999999999999999999977643
No 121
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.09 E-value=4.1e-05 Score=71.02 Aligned_cols=120 Identities=20% Similarity=0.190 Sum_probs=68.0
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCH-HHHHHHHHHcCCChhhhhcceeEeecCCHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP-QRLLQIADRYGLNGADVLENVAYARAYNTDHQ 203 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~-~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (342)
.+.|+|+||+|||+++..++...... .+..++|+++...... ..+..++..++.... ....+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~ 112 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK-----TTARFVYINGFIYRNFTAIIGEIARSLNIPFP--------RRGLSRDEF 112 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS-----CCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC--------SSCCCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh-----cCeeEEEEeCccCCCHHHHHHHHHHHhCccCC--------CCCCCHHHH
Confidence 89999999999999999887654321 0356899986554433 334455555543211 001122222
Q ss_pred HHHHHHHHHHhHh-cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH--hCCEEEEEeccc
Q 019381 204 SRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE--FGVAVVITNQVV 273 (342)
Q Consensus 204 ~~~l~~l~~~~~~-~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~--~~~~vi~~~h~~ 273 (342)
+..+...+.. .++.+||||++..+ . .. .+..+.+.+..+... .++++|+++|..
T Consensus 113 ---~~~l~~~l~~~~~~~vlilDE~~~l-~---------~~---~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 113 ---LALLVEHLRERDLYMFLVLDDAFNL-A---------PD---ILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp ---HHHHHHHHHHTTCCEEEEEETGGGS-C---------HH---HHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred ---HHHHHHHHhhcCCeEEEEEECcccc-c---------hH---HHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 2333333333 45889999999887 1 11 122344444333321 478888887654
No 122
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.08 E-value=7e-06 Score=77.41 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=29.1
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
++..|+.+-- -+.+| ++.|+|++|+|||||+..+.
T Consensus 47 nf~~l~~v~l-~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 47 NLATITQLEL-ELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EETTEEEEEE-ECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred cccceeeEEE-ecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 4556676666 78999 99999999999999998654
No 123
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.08 E-value=2.1e-05 Score=71.71 Aligned_cols=81 Identities=12% Similarity=0.206 Sum_probs=50.4
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeec
Q 019381 118 GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARA 197 (342)
Q Consensus 118 GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 197 (342)
|+..+..-++|+||||+|||+++..++.... +...++++...-+.. +. .
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~~--------~~~~~~i~~~~l~~~----------------------~~-g 88 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSSDLVSK----------------------WL-G 88 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--------SCEEEEEECCSSCCS----------------------SC-C
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHHHcC--------CCcEEEEEhHHHHhh----------------------hh-h
Confidence 4566667899999999999999998876541 235667766432110 00 0
Q ss_pred CCHHHHHHHHHHHHHHhHhcCceEEEEecccccccc
Q 019381 198 YNTDHQSRLLLEAASMMVETRFALMIVDSATALYRT 233 (342)
Q Consensus 198 ~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~ 233 (342)
.... .+..+........+.+|+||++..+...
T Consensus 89 ~~~~----~~~~lf~~a~~~~~~vl~iDEid~l~~~ 120 (322)
T 1xwi_A 89 ESEK----LVKNLFQLARENKPSIIFIDEIDSLCGS 120 (322)
T ss_dssp SCHH----HHHHHHHHHHHTSSEEEEEETTTGGGCC
T ss_pred HHHH----HHHHHHHHHHhcCCcEEEeecHHHhccc
Confidence 0111 1222223333467899999999998654
No 124
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.07 E-value=4e-06 Score=86.26 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=25.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.+++|++++|+||+|+|||||+.+++..
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 5778999999999999999999988654
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.06 E-value=5.2e-06 Score=76.92 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=65.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHH-HHHHHHHHcCCChhhhhcceeEeecCC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQ-RLLQIADRYGLNGADVLENVAYARAYN 199 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~-rl~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (342)
..+..+.|+|++|+|||+|+..++...... .+ .+..++|++........ .+..++..++.... ....+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~--~~-~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~--------~~~~~ 111 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK--FL-GKFKHVYINTRQIDTPYRVLADLLESLDVKVP--------FTGLS 111 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH--TC-SSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC--------SSSCC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH--hc-CCceEEEEECCCCCCHHHHHHHHHHHhCCCCC--------CCCCC
Confidence 346789999999999999999887654221 00 03468898864322221 12222222221100 01112
Q ss_pred HHHHHHHHHHHHHHhHhcC-ceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 200 TDHQSRLLLEAASMMVETR-FALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 200 ~~~~~~~l~~l~~~~~~~~-~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
.. ..+..+...+...+ +.+||||++..+...... + .+..+++.+..+ ...++.+|+++|..
T Consensus 112 ~~---~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~---~------~l~~l~~~~~~~-~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 112 IA---ELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND---D------ILYKLSRINSEV-NKSKISFIGITNDV 173 (386)
T ss_dssp HH---HHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS---T------HHHHHHHHHHSC-CC--EEEEEEESCG
T ss_pred HH---HHHHHHHHHHhccCCeEEEEEcChhhhhccCcC---H------HHHHHhhchhhc-CCCeEEEEEEECCC
Confidence 22 22333333443343 889999999987542100 0 122222222211 23477888887754
No 126
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.03 E-value=1.3e-05 Score=68.12 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=75.3
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNT 200 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (342)
.+|.+..++|+.|+||||.+++.+.+... .+.+|+++........ -...++.+.+.... .+ ...+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~------~g~kVli~k~~~d~R~-ge~~i~s~~g~~~~----a~---~~~~~ 91 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQF------AKQHAIVFKPCIDNRY-SEEDVVSHNGLKVK----AV---PVSAS 91 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEECC------------------CC----EE---ECSSG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEeccCCcc-hHHHHHhhcCCeeE----Ee---ecCCH
Confidence 56899999999999999999999888765 5778998875432111 11123333433211 01 11111
Q ss_pred HHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCc
Q 019381 201 DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSA 280 (342)
Q Consensus 201 ~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~ 280 (342)
. ++++ .+. .++++|+||+.+.+-. +.+..|..++.+ ++.||+...-++ +.+.
T Consensus 92 ~---~~~~----~~~-~~~dvViIDEaQF~~~-----------------~~V~~l~~l~~~-~~~Vi~~Gl~~D-F~~~- 143 (214)
T 2j9r_A 92 K---DIFK----HIT-EEMDVIAIDEVQFFDG-----------------DIVEVVQVLANR-GYRVIVAGLDQD-FRGL- 143 (214)
T ss_dssp G---GGGG----GCC-SSCCEEEECCGGGSCT-----------------THHHHHHHHHHT-TCEEEEEECSBC-TTSC-
T ss_pred H---HHHH----HHh-cCCCEEEEECcccCCH-----------------HHHHHHHHHhhC-CCEEEEEecccc-cccC-
Confidence 1 1111 111 2489999999998521 233556666665 999999876554 2221
Q ss_pred ccCCCCccccCccccccccceEEEEEe
Q 019381 281 IFAGPQIKPIGGNIMAHASTTRLALRK 307 (342)
Q Consensus 281 ~~~~~~~~p~~g~~~~~~~d~~l~l~~ 307 (342)
.|. +...+-..+|.+..|..
T Consensus 144 ~F~-------~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 144 PFG-------QVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp BCT-------THHHHHHHCSEEEECCC
T ss_pred ccc-------cHHHHHHhcccEEeeee
Confidence 342 12234456666666554
No 127
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.02 E-value=8e-05 Score=66.95 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=34.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+|+++.|+|++|+||||++..+|..... .+++|++++.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~------~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG------KGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH------TTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEecCCc
Confidence 7899999999999999999999876654 467899998874
No 128
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.02 E-value=7.9e-06 Score=84.29 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=25.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.+.+|++++|+||+|+|||||+.+++...
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999985543
No 129
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.99 E-value=3.4e-05 Score=70.96 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=45.6
Q ss_pred hhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 98 QRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 98 ~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.......+.||+..||.++ -+.+|+++.|.|++|+|||||+..++... .++ ..++.+.++.
T Consensus 48 ~~~l~~~~~tg~~ald~ll--~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~--~~~-----~g~i~~~G~~ 108 (347)
T 2obl_A 48 RQVIDQPFILGVRAIDGLL--TCGIGQRIGIFAGSGVGKSTLLGMICNGA--SAD-----IIVLALIGER 108 (347)
T ss_dssp CCCCCSEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHS--CCS-----EEEEEEESCC
T ss_pred ecccceecCCCCEEEEeee--eecCCCEEEEECCCCCCHHHHHHHHhcCC--CCC-----EEEEEEeccc
Confidence 3344556778999999994 69999999999999999999988776442 222 2355566654
No 130
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.98 E-value=2.5e-05 Score=70.20 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=47.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|.++...++|+||||+|||+++..+|... +.++++++... +.. . +. ..
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l---------~~~~i~v~~~~---------l~~-----------~--~~-g~ 79 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM---------GINPIMMSAGE---------LES-----------G--NA-GE 79 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH---------TCCCEEEEHHH---------HHC-----------C------H
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh---------CCCEEEEeHHH---------hhh-----------c--cC-ch
Confidence 55666678999999999999999987654 23577777531 100 0 00 00
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~ 232 (342)
....+...+..+...+....+.+|+||++-.+..
T Consensus 80 ~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 80 PAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred hHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 0112223333333333456789999999988765
No 131
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.98 E-value=2e-05 Score=79.96 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=72.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|+.+-.=++|+||||+|||+|+..+|... +...+++++.. +... +
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~el---------g~~~~~v~~~~---------l~sk-----------------~ 278 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE---------IMSK-----------------L 278 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTT---------TCEEEEEEHHH---------HHSS-----------------C
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHh---------CCeEEEEEhHH---------hhcc-----------------c
Confidence 66666679999999999999999877432 33466665421 1100 0
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 277 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~ 277 (342)
..+....+..+......+.+.+|+||++-.+......+.++... +.+..++..+..+....++.||.++.-....+
T Consensus 279 -~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~--riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 279 -AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER--RIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp -TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHH--HHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred -chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHH--HHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 01112223333334445779999999999987643322233232 34566777777766666777776655444333
No 132
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.97 E-value=4.2e-05 Score=73.28 Aligned_cols=121 Identities=15% Similarity=0.200 Sum_probs=66.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
.+++| ++|+||||+|||+++..++... +.+.++++...-... + . ..
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~---------~~~f~~is~~~~~~~---------~-------------~-g~ 92 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEA---------NVPFFHISGSDFVEL---------F-------------V-GV 92 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHH---------TCCEEEEEGGGTTTC---------C-------------T-TH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHc---------CCCeeeCCHHHHHHH---------H-------------h-cc
Confidence 35555 8899999999999999887643 234677765421100 0 0 00
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCC-CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSG-RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 277 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~-~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~ 277 (342)
.... +..+........+.+|+||++..+......+ .+....+.+.+..++..+..+....++.||.++|.....+
T Consensus 93 ~~~~----~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAAR----VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHH----HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHH----HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 0111 1122222334678999999999885432110 0111223334455555555443455788888877665443
No 133
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=97.97 E-value=3.1e-05 Score=70.68 Aligned_cols=102 Identities=9% Similarity=0.145 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhHh--cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHh--CCEEEEEeccccccCCC
Q 019381 204 SRLLLEAASMMVE--TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF--GVAVVITNQVVAQVDGS 279 (342)
Q Consensus 204 ~~~l~~l~~~~~~--~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~--~~~vi~~~h~~~~~~~~ 279 (342)
..++.++...+.. .++-.|+|=++.+....... ......+..|+..||.+.+.+ +++++++-...
T Consensus 201 ~~lL~~I~~~i~~~~~~ilRIvI~SLgSP~wy~~~-----~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~------ 269 (361)
T 4a8j_A 201 STILSQIEQTIKRNDKKLIRIVIPSLLHPAMYPPK-----MFESSEIIGLMHGVRSLVKKYYERVVLFASISID------ 269 (361)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEETTTTCTTTSCGG-----GGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECT------
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCc-----ccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChH------
Confidence 3455555555433 44667888888776542110 112335789999999999987 44655553222
Q ss_pred cccCCCCccccCccccccccceEEEEEeec------------C-----CeEEEEEEeCCC
Q 019381 280 AIFAGPQIKPIGGNIMAHASTTRLALRKGR------------G-----EERICKVISSPC 322 (342)
Q Consensus 280 ~~~~~~~~~p~~g~~~~~~~d~~l~l~~~~------------~-----~~r~~~v~K~r~ 322 (342)
.|. +..-..|.+.+|.++.|+-.. + ..-.++|.|-+.
T Consensus 270 -l~~-----~~l~~rle~l~D~vi~L~pF~~~~~~~~~~~yk~~p~~~~~GLl~V~KLP~ 323 (361)
T 4a8j_A 270 -IIT-----PPLLVLLRNMFDSVINLEPFNQEMTEFLERVYKSQPGKIQHGLVHILKLPV 323 (361)
T ss_dssp -TSC-----HHHHHHHHHHCSEEEEEEECCHHHHHHHHHHTTTCGGGCCCEEEEEEECTT
T ss_pred -HcC-----hHHHHHHHHhCcEEEEeeecCCchhhhcccccccCcccccceEEEEEeccc
Confidence 121 134567999999999999632 1 367889999763
No 134
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.96 E-value=2.4e-05 Score=71.18 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=48.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
+..+..-++|+||||+|||+++..++... +.++++++... +. +..
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~---------~~~~~~v~~~~---------l~---~~~-------------- 91 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEA---------NSTFFSVSSSD---------LV---SKW-------------- 91 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHH---------TCEEEEEEHHH---------HH---TTT--------------
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHH---------CCCEEEEchHH---------Hh---hcc--------------
Confidence 44556679999999999999999887653 23566665421 10 000
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~ 232 (342)
.......+..+........+.+|+||++..+..
T Consensus 92 -~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 92 -MGESEKLVKQLFAMARENKPSIIFIDQVDALTG 124 (322)
T ss_dssp -GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC
T ss_pred -cchHHHHHHHHHHHHHhcCCeEEEechhhhhhc
Confidence 011122233333344456789999999998865
No 135
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.95 E-value=2.6e-05 Score=65.28 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=76.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNT 200 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (342)
..|.+..|+|+.|+||||.+++.+.+... .+.+|+|+..+.+.... ..+..+.+.. .+.+ ...+.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~------~~~kvl~~kp~~D~R~~--~~i~S~~g~~----~~A~---~~~~~ 82 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQI------AQYKCLVIKYAKDTRYS--SSFCTHDRNT----MEAL---PACLL 82 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEETTCCCGG--GSCCHHHHHH----SEEE---EESSG
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEccccCccch--hhhhhccCCc----ccce---ecCCH
Confidence 35899999999999999888887777665 46789999866331110 0111111110 0111 11222
Q ss_pred HHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCc
Q 019381 201 DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSA 280 (342)
Q Consensus 201 ~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~ 280 (342)
.++.+ . ..++++|+||+.+.+ . ++...+..++ +.|+.||+...-++ +.+.
T Consensus 83 ~d~~~---~------~~~~DvIlIDEaQFf-k-----------------~~ve~~~~L~-~~gk~VI~~GL~~D-F~~~- 132 (195)
T 1w4r_A 83 RDVAQ---E------ALGVAVIGIDEGQFF-P-----------------DIVEFCEAMA-NAGKTVIVAALDGT-FQRK- 132 (195)
T ss_dssp GGGHH---H------HHTCSEEEESSGGGC-T-----------------THHHHHHHHH-HTTCEEEEEEESBC-TTSS-
T ss_pred HHHHH---h------ccCCCEEEEEchhhh-H-----------------HHHHHHHHHH-HCCCeEEEEecccc-cccc-
Confidence 22221 1 135899999999987 3 1223345566 57999999875554 3322
Q ss_pred ccCCCCccccCccccccccceEEEEEe
Q 019381 281 IFAGPQIKPIGGNIMAHASTTRLALRK 307 (342)
Q Consensus 281 ~~~~~~~~p~~g~~~~~~~d~~l~l~~ 307 (342)
.|+ +...+-..+|.+..|..
T Consensus 133 ~F~-------~~~~Ll~~Ad~v~kl~a 152 (195)
T 1w4r_A 133 PFG-------AILNLVPLAESVVKLTA 152 (195)
T ss_dssp BCT-------TGGGGGGGCSEEEECCE
T ss_pred cch-------hHHHHHHhcCeEEEeee
Confidence 342 12234456676666654
No 136
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.95 E-value=4e-05 Score=78.83 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=33.4
Q ss_pred CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 218 ~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++++|+|++++-++. .. ...++..|++++++ |.|||+++|-..
T Consensus 826 ~p~LLILDEPTsGLD~--------~~----~~~L~~lL~~L~~~-G~TVIvI~HdL~ 869 (916)
T 3pih_A 826 GRTLYILDEPTVGLHF--------ED----VRKLVEVLHRLVDR-GNTVIVIEHNLD 869 (916)
T ss_dssp SSEEEEEESTTTTCCH--------HH----HHHHHHHHHHHHHT-TCEEEEECCCHH
T ss_pred CCCEEEEECCCCCCCH--------HH----HHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 4689999999998753 22 23677778887654 899999999764
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.94 E-value=2.8e-05 Score=70.09 Aligned_cols=120 Identities=14% Similarity=0.241 Sum_probs=65.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|++++.-++|+||||+|||+++..++... +.+.+++++.. +. ...++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~---------~~~~i~v~~~~------l~--~~~~g~~-------------- 93 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISIKGPE------LL--TMWFGES-------------- 93 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT---------TCEEEEECHHH------HH--HHHHTTC--------------
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh---------CCCEEEEEhHH------HH--hhhcCch--------------
Confidence 78888999999999999999999887543 23466665321 10 0111111
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCC---CcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSG---RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~---~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~ 275 (342)
...+...+. ......+.+++||++..+....... .+....+ .+..++..+..+....++.||.+++....
T Consensus 94 -~~~~~~~f~----~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~--~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 94 -EANVREIFD----KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp -TTHHHHHHH----HHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCH--HHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred -HHHHHHHHH----HHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHH--HHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 111122222 2233568999999999876431100 0011111 23345555544333446777777765543
Q ss_pred c
Q 019381 276 V 276 (342)
Q Consensus 276 ~ 276 (342)
.
T Consensus 167 l 167 (301)
T 3cf0_A 167 I 167 (301)
T ss_dssp S
T ss_pred c
Confidence 3
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.94 E-value=1.5e-05 Score=68.65 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=35.2
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
|..+..++ .+..+.|+|+||+|||+++..++..... .+..++|++...
T Consensus 43 l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~------~~~~~~~~~~~~ 90 (242)
T 3bos_A 43 LKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANE------LERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEGGG
T ss_pred HHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEEHHH
Confidence 44444422 5778999999999999999998766543 245788888753
No 139
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.93 E-value=6.2e-05 Score=69.51 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 118 GGVETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 118 GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
++..+..-++|+||||+|||+++..++...
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 345555668999999999999999887654
No 140
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.92 E-value=4.2e-05 Score=69.66 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=30.9
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
.+++++++|++++-++. .. ...+...|+.++ .+.+||+++|-.
T Consensus 240 ~~~~~lllDEp~~~LD~--------~~----~~~l~~~l~~~~--~~~~vi~~tH~~ 282 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDD--------YN----AERFKRLLKENS--KHTQFIVITHNK 282 (322)
T ss_dssp SCCSEEEEESCCSSCCH--------HH----HHHHHHHHHHHT--TTSEEEEECCCT
T ss_pred CCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHhc--CCCeEEEEECCH
Confidence 46799999999997753 22 235666677663 278999999873
No 141
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.92 E-value=9.3e-06 Score=68.25 Aligned_cols=113 Identities=17% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNT 200 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (342)
.+|.+..++|+.|+||||.++.++.+... .+.+|+++........ -...+..+.+... ....+ .+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~------~g~kV~v~k~~~d~r~-~~~~i~s~~g~~~----~a~~~---~~~ 71 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKI------AKQKIQVFKPEIDNRY-SKEDVVSHMGEKE----QAVAI---KNS 71 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEEC--------CEEECTTSCEE----ECEEE---SSS
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEeccCccc-hHHHHHhhcCCce----eeEee---CCH
Confidence 45889999999999999999999887765 4678888864321000 0000111111110 01111 111
Q ss_pred HHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 201 DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 201 ~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
. ++++ .+. .+.++|+||+.+.+-. +.+..|+.++.. +++||++..-+
T Consensus 72 ~---~i~~----~~~-~~~dvViIDEaqfl~~-----------------~~v~~l~~l~~~-~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 72 R---EILK----YFE-EDTEVIAIDEVQFFDD-----------------EIVEIVNKIAES-GRRVICAGLDM 118 (191)
T ss_dssp T---HHHH----HCC-TTCSEEEECSGGGSCT-----------------HHHHHHHHHHHT-TCEEEEEECSB
T ss_pred H---HHHH----HHh-ccCCEEEEECCCCCCH-----------------HHHHHHHHHHhC-CCEEEEEeccc
Confidence 1 2222 111 2479999999887421 335567777766 99999986544
No 142
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.91 E-value=2.3e-05 Score=80.37 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=33.5
Q ss_pred CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 218 ~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++++|+|+++.-++. .. ...++..|+.+++ .|.|||+++|-..
T Consensus 866 ~p~lLILDEPTsGLD~--------~~----~~~l~~lL~~L~~-~G~TVIvisHdl~ 909 (972)
T 2r6f_A 866 GRTLYILDEPTTGLHV--------DD----IARLLDVLHRLVD-NGDTVLVIEHNLD 909 (972)
T ss_dssp SCEEEEEECTTTTCCH--------HH----HHHHHHHHHHHHH-TTCEEEEECCCHH
T ss_pred CCCEEEEECCCCCCCH--------HH----HHHHHHHHHHHHh-CCCEEEEEcCCHH
Confidence 3699999999997653 22 2367777888765 4899999999765
No 143
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.90 E-value=1.1e-05 Score=82.18 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=33.7
Q ss_pred CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 218 ~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++++|+|+++.-++. .. ...+...|+.++++ |.+||+++|-..
T Consensus 751 ~p~lLILDEPTsGLD~--------~~----~~~l~~lL~~L~~~-G~tVIvisHdl~ 794 (842)
T 2vf7_A 751 GGTVYVLDEPTTGLHP--------AD----VERLQRQLVKLVDA-GNTVIAVEHKMQ 794 (842)
T ss_dssp SCEEEEEECTTTTCCH--------HH----HHHHHHHHHHHHHT-TCEEEEECCCHH
T ss_pred CCCEEEEECCCCCCCH--------HH----HHHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence 3799999999997653 22 34677778887754 899999999765
No 144
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.90 E-value=4.5e-05 Score=66.83 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=29.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
|++...-+.|+||||+|||+++..++.... .+.++++...
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~---------~~~~~~~~~~ 74 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQ---------VPFLAMAGAE 74 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHT---------CCEEEEETTT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCEEEechHH
Confidence 455556689999999999999998876542 3577777653
No 145
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.89 E-value=5.2e-05 Score=78.03 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=33.6
Q ss_pred CceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 218 ~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+++++|+|+++.-++. .. ...++..|+.+++ .+.|||+++|-..
T Consensus 884 ~p~lLILDEPTsGLD~--------~~----~~~l~~lL~~L~~-~G~TVIvisHdl~ 927 (993)
T 2ygr_A 884 GRTVYILDEPTTGLHF--------DD----IRKLLNVINGLVD-KGNTVIVIEHNLD 927 (993)
T ss_dssp SSEEEEEESTTTTCCH--------HH----HHHHHHHHHHHHH-TTCEEEEECCCHH
T ss_pred CCCEEEEECCCCCCCH--------HH----HHHHHHHHHHHHh-CCCEEEEEcCCHH
Confidence 3699999999997653 22 3467777888765 4899999999765
No 146
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.89 E-value=1.6e-05 Score=73.60 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHH-HHHHHHHHcCCChhhhhcceeEeecCC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQ-RLLQIADRYGLNGADVLENVAYARAYN 199 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~-rl~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (342)
..+..+.|+||||+|||+++..++..........+.+..++|++.....+.. .+..++..++.... ....+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~ 113 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP--------FTGLS 113 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC--------SSCCC
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC--------CCCCC
Confidence 3456899999999999999998876542210000114568889876543332 23445555543210 01111
Q ss_pred HHHHHHHHHHHHHHhHhc-CceEEEEecccccc
Q 019381 200 TDHQSRLLLEAASMMVET-RFALMIVDSATALY 231 (342)
Q Consensus 200 ~~~~~~~l~~l~~~~~~~-~~~lvviD~l~~l~ 231 (342)
.. ..+..+...+... ++.+||||++..+.
T Consensus 114 ~~---~~~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 114 VG---EVYERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HH---HHHHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HH---HHHHHHHHHHhccCCeEEEEEccHhhhc
Confidence 22 2233333333333 47799999998874
No 147
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.88 E-value=0.00013 Score=62.66 Aligned_cols=41 Identities=15% Similarity=-0.066 Sum_probs=33.1
Q ss_pred CCcE-EEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 122 TGSI-TEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 122 ~G~l-~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
+|.+ +.+.|+||+||||++.+++...+. .|.+|++++.+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~------~G~~V~v~d~D~q 45 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLR------QGVRVMAGVVETH 45 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCCT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH------CCCCEEEEEeCCC
Confidence 4555 788999999999999999887765 4678988888753
No 148
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.87 E-value=0.0001 Score=66.97 Aligned_cols=42 Identities=17% Similarity=0.016 Sum_probs=35.7
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
..+|.++.|+|++|+||||++..+|...+. .+++|++++.+.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~------~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAE------LGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 567899999999999999999999876654 467899998874
No 149
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.87 E-value=1.2e-05 Score=74.68 Aligned_cols=149 Identities=18% Similarity=0.187 Sum_probs=73.4
Q ss_pred CCCCC--CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEe----c-CCCCCH---HHHHHHHHHcCCChhh
Q 019381 118 GGVET--GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID----A-EGTFRP---QRLLQIADRYGLNGAD 187 (342)
Q Consensus 118 GGi~~--G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~----~-e~~~~~---~rl~~~~~~~~~~~~~ 187 (342)
--+.+ |+.+.|.|++|||||||+..++.. .++..+...+. +|+. . +..+.. ..+....+.......+
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl--~~~~~~~e~G~-i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~t 239 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAV--FNTTSAWEYGR-EFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVR 239 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHH--TTCEEECCTTH-HHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHH--hCCCcchhhHH-HHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHh
Confidence 36778 999999999999999999987643 33333111112 2321 1 111111 1122222211111124
Q ss_pred hhcceeEeecCCHHHHH-HHH------HHHHHHhHhcCceEEEEecccccccccc-CCCcchHHHHHHHHHHHHHHHHHH
Q 019381 188 VLENVAYARAYNTDHQS-RLL------LEAASMMVETRFALMIVDSATALYRTDF-SGRGELSARQMHLAKFLRSLQKLA 259 (342)
Q Consensus 188 ~~~~i~~~~~~~~~~~~-~~l------~~l~~~~~~~~~~lvviD~l~~l~~~~~-~~~~~~~~r~~~l~~i~~~Lk~la 259 (342)
+.+++.+.......... ... ..+.......+++++++|+....+.... ...++..+| ..+.+.|+++.
T Consensus 240 ~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r----~~l~~~l~~l~ 315 (365)
T 1lw7_A 240 HSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQR----QQFQQLLKKLL 315 (365)
T ss_dssp HCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSH----HHHHHHHHHHH
T ss_pred ccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHH----HHHHHHHHHHH
Confidence 45676665432111111 111 1112223345799999997321111000 000111222 37778888888
Q ss_pred HHhCCEEEEEeccc
Q 019381 260 DEFGVAVVITNQVV 273 (342)
Q Consensus 260 ~~~~~~vi~~~h~~ 273 (342)
++++.+|++++|.+
T Consensus 316 ~~~~~~ililde~~ 329 (365)
T 1lw7_A 316 DKYKVPYIEIESPS 329 (365)
T ss_dssp HGGGCCCEEEECSS
T ss_pred HHcCCCEEEeCCCC
Confidence 88899999998764
No 150
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.85 E-value=0.0001 Score=65.90 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=47.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTD 201 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (342)
++.-++|+||||+|||+++..++... +...++++...-... . .....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~~------------~------------~~~~~ 99 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---------SATFLNISAASLTSK------------Y------------VGDGE 99 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---------TCEEEEEESTTTSSS------------S------------CSCHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---------CCCeEEeeHHHHhhc------------c------------cchHH
Confidence 45679999999999999999887643 234666665431110 0 00111
Q ss_pred HHHHHHHHHHHHhHhcCceEEEEecccccccc
Q 019381 202 HQSRLLLEAASMMVETRFALMIVDSATALYRT 233 (342)
Q Consensus 202 ~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~ 233 (342)
..+..+.......++.+|+||++..+...
T Consensus 100 ---~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 100 ---KLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp ---HHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred ---HHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 11222223334467899999999998654
No 151
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.84 E-value=0.00026 Score=66.72 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
++.++.++|++|+||||++..+|..... .+++|++++.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~------~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG------KGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEeeccc
Confidence 6889999999999999999999876654 467899999864
No 152
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.82 E-value=8.1e-05 Score=61.16 Aligned_cols=118 Identities=11% Similarity=0.048 Sum_probs=60.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCC-CCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLD-QGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTD 201 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~-~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (342)
+..+.|+|+||+|||+++..++........ ....+..+++++... ...... ...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~----------------~~~ 97 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS---------LIAGAK----------------YRG 97 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH---------HHHHCC----------------SHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH---------hhcCCC----------------chh
Confidence 456799999999999999988765432100 000134555554321 110000 001
Q ss_pred HHHHHHHHHHHHhHh-cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Q 019381 202 HQSRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV 273 (342)
Q Consensus 202 ~~~~~l~~l~~~~~~-~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~ 273 (342)
.....+..+...+.. .++.++|||++..+.......... ..+.+.|+.+..+.++.+|+++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--------~~~~~~l~~~~~~~~~~ii~~~~~~ 162 (187)
T 2p65_A 98 DFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--------LDAGNILKPMLARGELRCIGATTVS 162 (187)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--------CCTHHHHHHHHHTTCSCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--------hHHHHHHHHHHhcCCeeEEEecCHH
Confidence 111222222222222 357899999999886321100000 1344455555566677787776543
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.81 E-value=5.7e-05 Score=67.93 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=34.0
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.+|+++.|+|++|+||||++..+|...... .|.+|++++.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-----~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE-----KHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCEEEEEecCc
Confidence 368999999999999999999988765431 356899998864
No 154
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.81 E-value=3.4e-05 Score=64.02 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHc
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.+.|.||||||||||+..++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999877543
No 155
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.81 E-value=4.6e-05 Score=63.92 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=71.9
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC-CCHHHHHHHHHHcCCChhhhhcceeEeecCC---
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT-FRPQRLLQIADRYGLNGADVLENVAYARAYN--- 199 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~-~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~--- 199 (342)
.++.|++.+|.||||.+.-++..++- .|.+|+++..-.. ..... ..+++++++.....-.... .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g------~G~rV~~vQF~Kg~~~~gE-~~~l~~L~v~~~~~g~gf~-~~~~~~~~ 100 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG------HGKNVGVVQFIKGTWPNGE-RNLLEPHGVEFQVMATGFT-WETQNREA 100 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH------TTCCEEEEESSCCSSCCHH-HHHHGGGTCEEEECCTTCC-CCGGGHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEEeeCCCCCccH-HHHHHhCCcEEEEcccccc-cCCCCcHH
Confidence 46778888999999999999887775 6789999976543 11111 1334444321111001111 11111
Q ss_pred -HHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Q 019381 200 -TDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQ 271 (342)
Q Consensus 200 -~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h 271 (342)
.......+..+...+....+++||+|++...+.-.+-+ ..+++..|.. +-.+..||+|..
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~----------~~ev~~~l~~--Rp~~~~vIlTGr 161 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP----------LEEVISALNA--RPGHQTVIITGR 161 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC----------HHHHHHHHHT--SCTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC----------HHHHHHHHHh--CcCCCEEEEECC
Confidence 11223344455555555679999999998865433321 2255555542 223677887753
No 156
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.80 E-value=0.00029 Score=60.45 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=64.1
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTD 201 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (342)
.|.+..++|+.|+||||.+++.+.+... .+.+|+++....+.... ..+..+.+.... .+.+ .+..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~------~g~kvli~kp~~D~Ryg--~~i~sr~G~~~~----a~~i---~~~~ 82 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI------AQYKCLVIKYAKDTRYS--SSFCTHDRNTME----ALPA---CLLR 82 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT------TTCCEEEEEETTCCCC-------------CE----EEEE---SSGG
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH------CCCeEEEEeecCCccch--HHHHhhcCCeeE----EEec---CCHH
Confidence 5899999999999999999999887765 57789988754332211 234444443322 1111 1222
Q ss_pred HHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 202 HQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 202 ~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
+ ++.. + .+.++|+||+.+.+.. +.++++.+. +.++.||++..-.+
T Consensus 83 d---i~~~----~--~~~dvViIDEaQF~~~---------------v~el~~~l~----~~gi~VI~~GL~~D 127 (234)
T 2orv_A 83 D---VAQE----A--LGVAVIGIDEGQFFPD---------------IVEFCEAMA----NAGKTVIVAALDGT 127 (234)
T ss_dssp G---GHHH----H--TTCSEEEESSGGGCTT---------------HHHHHHHHH----HTTCEEEEECCSBC
T ss_pred H---HHHH----h--ccCCEEEEEchhhhhh---------------HHHHHHHHH----hCCCEEEEEecccc
Confidence 2 2221 1 4589999999998621 224444333 36999999876544
No 157
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.79 E-value=2.2e-05 Score=81.91 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=34.0
Q ss_pred hcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 216 ETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 216 ~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
..++.+|++|+++.-.+. .+.. ..+...|+.++++.++++|+++|-..
T Consensus 866 a~~~sLlLLDEp~~Gtd~--------~dg~---~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTAT--------FDGT---AIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp CCTTCEEEEECTTTTSCH--------HHHH---HHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred CCCCcEEEEECCCCCCCh--------HHHH---HHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 367899999999876542 2221 23456677777666999999999865
No 158
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.76 E-value=4.2e-05 Score=65.00 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=77.2
Q ss_pred hhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeE
Q 019381 115 ILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAY 194 (342)
Q Consensus 115 ~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~ 194 (342)
++.+--..|.+..|+|+-|+||||.++..+.+... .+.+++.+....+-.. -...+..+.+...+ .+.+
T Consensus 20 ~m~~~~~~G~I~vitG~M~sGKTT~Llr~~~r~~~------~g~kvli~kp~~D~R~-~~~~I~Sr~G~~~~----a~~v 88 (219)
T 3e2i_A 20 HMYETYHSGWIECITGSMFSGKSEELIRRLRRGIY------AKQKVVVFKPAIDDRY-HKEKVVSHNGNAIE----AINI 88 (219)
T ss_dssp -------CCEEEEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEEC------------CBTTBCCE----EEEE
T ss_pred eEeeccCCceEEEEECCCCCCHHHHHHHHHHHHHH------cCCceEEEEeccCCcc-hhhhHHHhcCCcee----eEEe
Confidence 33323466899999999999999987777766654 4567888866532111 11123333333211 1111
Q ss_pred eecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 195 ARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 195 ~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+..++...+ ..++++|+||+.+.+-. +++..|..++ ..|++||+..--+
T Consensus 89 ---~~~~di~~~i--------~~~~dvV~IDEaQFf~~-----------------~~v~~l~~la-~~gi~Vi~~GLd~- 138 (219)
T 3e2i_A 89 ---SKASEIMTHD--------LTNVDVIGIDEVQFFDD-----------------EIVSIVEKLS-ADGHRVIVAGLDM- 138 (219)
T ss_dssp ---SSGGGGGGSC--------CTTCSEEEECCGGGSCT-----------------HHHHHHHHHH-HTTCEEEEEEESB-
T ss_pred ---CCHHHHHHHH--------hcCCCEEEEechhcCCH-----------------HHHHHHHHHH-HCCCEEEEeeccc-
Confidence 1122211111 24689999999998621 4666777888 5799999875433
Q ss_pred ccCCCcccCCCCccccCccccccccceEEEEEee
Q 019381 275 QVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKG 308 (342)
Q Consensus 275 ~~~~~~~~~~~~~~p~~g~~~~~~~d~~l~l~~~ 308 (342)
.+.+. .|+ +...+-..+|.+..|...
T Consensus 139 DF~~~-~F~-------~~~~Ll~~Ad~v~kl~ai 164 (219)
T 3e2i_A 139 DFRGE-PFE-------PMPKLMAVSEQVTKLQAV 164 (219)
T ss_dssp CTTSC-BCT-------THHHHHHHCSEEEEECEE
T ss_pred ccccC-CCc-------cHHHHHHhcceEEEeeeE
Confidence 23321 342 222344566766666643
No 159
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.76 E-value=9.9e-05 Score=71.08 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=65.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|.++..-++|+|+||+|||+++..++... +.+.+++++.. +...+ .
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~vn~~~---------l~~~~--~-------------- 279 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE---------IMSKL--A-------------- 279 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHC---------SSEEEEEEHHH---------HHTSC--T--------------
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHh---------CCCEEEEEchH---------hhhhh--c--------------
Confidence 45666679999999999999999886543 34577776421 11000 0
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+....+..+........+.+|+||++..+........++.. .+.+..+++.|..+....++.||.+++...
T Consensus 280 --g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~--~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 280 --GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE--RRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp --THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHH--HHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred --chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHH--HHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 001111222222233466889999999888654222222222 223445555555444444566666665443
No 160
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.75 E-value=2.7e-05 Score=74.40 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
-+++|+++.|.|++|||||||+..++.
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 577999999999999999999997653
No 161
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.74 E-value=8.3e-05 Score=76.04 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=66.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
+++++.-++|+||||||||+++..++... +...++++... + .+...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l---------~~~~i~v~~~~---------l---~~~~~------------- 279 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE---------I---MSKLA------------- 279 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT---------TCEEEEEEHHH---------H---SSSST-------------
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc---------CCcEEEEEchH---------h---hhhhh-------------
Confidence 78999999999999999999999876432 23456665421 0 00000
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~ 276 (342)
......+..+........+.++++|++..+........++.. .+.+..++..+..+....++.+|.+++.....
T Consensus 280 --g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~--~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 280 --GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE--RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp --THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHH--HHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred --hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHH--HHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 011111222222233356899999999888654222122222 22234444444444344567788777654433
No 162
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=7e-05 Score=65.65 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=25.0
Q ss_pred EEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
++|+||||+|||+++..++...- .+.++++..
T Consensus 48 vll~G~~GtGKT~la~~la~~~~---------~~~~~i~~~ 79 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK---------VPFFTISGS 79 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT---------CCEEEECSC
T ss_pred EEEECcCCCCHHHHHHHHHHHcC---------CCEEEEeHH
Confidence 88999999999999998875432 246777654
No 163
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.74 E-value=3.5e-05 Score=71.67 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=24.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+++|++++|+||+||||||++..++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 688999999999999999999987654
No 164
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.72 E-value=0.00035 Score=67.28 Aligned_cols=39 Identities=28% Similarity=0.244 Sum_probs=32.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
..++.|+|++|+||||++..++..... .+.+|++++.+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~------~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR------KGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEeccc
Confidence 558999999999999999999876654 467899998864
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.70 E-value=5.7e-05 Score=62.27 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHc
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+..+.|+|+||+|||+++..++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999887654
No 166
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.69 E-value=0.00013 Score=74.22 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=24.3
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
++|+++.|+||+|+|||||+.+++...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 689999999999999999999987643
No 167
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.69 E-value=0.00018 Score=66.55 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=68.3
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcC
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYG 182 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~ 182 (342)
..+.||+..+|-++ -+.+|+-+.|.|+||+|||+|+.+++....... .+-.++|.-... ....+.++.+.+.
T Consensus 156 ~~~~tGiraID~~~--pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~----~~v~~I~~lIGE--R~~Ev~~~~~~~~ 227 (422)
T 3ice_A 156 STEDLTARVLDLAS--PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH----PDCVLMVLLIDE--RPEEVTEMQRLVK 227 (422)
T ss_dssp CTTHHHHHHHHHHS--CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHC----TTSEEEEEEESS--CHHHHHHHHTTCS
T ss_pred Ccccccceeeeeee--eecCCcEEEEecCCCCChhHHHHHHHHHHhhcC----CCeeEEEEEecC--ChHHHHHHHHHhC
Confidence 46789999999888 599999999999999999999999877654321 123466654332 2444444433331
Q ss_pred CChhhhhcceeEeecCCHHHHH------HHHHHHHHHhHhcCceEEEEeccccccc
Q 019381 183 LNGADVLENVAYARAYNTDHQS------RLLLEAASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~------~~l~~l~~~~~~~~~~lvviD~l~~l~~ 232 (342)
.+.+....+..-.. ..+..++.+.....--+|++|+++.+..
T Consensus 228 --------~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~ 275 (422)
T 3ice_A 228 --------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 275 (422)
T ss_dssp --------SEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHH
T ss_pred --------eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHH
Confidence 22333332211111 1122233333333455788999998743
No 168
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.68 E-value=0.00013 Score=66.33 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.+..+.|+||||+|||+++..++..... .+.+++|++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~------~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK------RGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH------TTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEHH
Confidence 4567999999999999999988765533 24578999865
No 169
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.68 E-value=0.0002 Score=66.12 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=46.9
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNT 200 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (342)
.+..-++|+|+||+|||+++..++... +..+++++...-+.. . .
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---------~~~~~~i~~~~l~~~--------------------------~-~ 158 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---------GATFFSISASSLTSK--------------------------W-V 158 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---------TCEEEEEEGGGGCCS--------------------------S-T
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---------CCeEEEEehHHhhcc--------------------------c-c
Confidence 345569999999999999999887543 335777766421100 0 0
Q ss_pred HHHHHHHHHHHHHhHhcCceEEEEeccccccc
Q 019381 201 DHQSRLLLEAASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 201 ~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~ 232 (342)
......+..+........+.+|+||++..+..
T Consensus 159 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 159 GEGEKMVRALFAVARCQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETHHHHTB
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEeCchhhhc
Confidence 01112222223333346789999999988865
No 170
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.67 E-value=0.00044 Score=65.64 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=41.5
Q ss_pred hccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHccc
Q 019381 99 RLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQL 149 (342)
Q Consensus 99 ~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~ 149 (342)
......+.||+..+|.+. -+-+|+.+.|.|+||+|||+|+..++.+...
T Consensus 129 ~~~~e~l~TGir~ID~L~--pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 129 ATEVEILETGIKVVDLLA--PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp CCSCCEECCSCHHHHHHS--CEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred cccCccccccchHHHHHh--hhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 344567899999999987 4778999999999999999999988776543
No 171
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.66 E-value=0.00029 Score=65.81 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=58.1
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTD 201 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (342)
++.-++|+|+||+|||+++..++... +..+++++...-... . .+ ...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~---------~~~~~~v~~~~l~~~-~-------~g---------------~~~- 193 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES---------NATFFNISAASLTSK-Y-------VG---------------EGE- 193 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT---------TCEEEEECSCCC------------------------------CH-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh---------cCcEEEeeHHHhhcc-c-------cc---------------hHH-
Confidence 45679999999999999999886542 346777876542111 0 00 001
Q ss_pred HHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH--hCCEEEEEecc
Q 019381 202 HQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE--FGVAVVITNQV 272 (342)
Q Consensus 202 ~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~--~~~~vi~~~h~ 272 (342)
..+..+........+.+|+||++..++.....+...... +....++..+..+... .++.||.+++.
T Consensus 194 ---~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~--~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 194 ---KLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASR--RLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp ---HHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHH--HHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred ---HHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHH--HHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 112222233344678999999999886532211111111 2233455555544332 24555555543
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.62 E-value=0.00062 Score=62.68 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=27.0
Q ss_pred cCCCCCCcEEEEecCCCCChhHHHHHHHHHcc
Q 019381 117 EGGVETGSITEIYGEFRSGKTQLCHTLCVTCQ 148 (342)
Q Consensus 117 ~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~ 148 (342)
..|..+|..++|+||||+|||+++..++....
T Consensus 64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34667788999999999999999999876653
No 173
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.61 E-value=0.00026 Score=62.82 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=27.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+++| ++|+||||||||+|+..++... +.+.++++..
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~---------~~~~i~i~g~ 78 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANES---------GLNFISVKGP 78 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHT---------TCEEEEEETT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHc---------CCCEEEEEcH
Confidence 45666 9999999999999999876542 1246777764
No 174
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.61 E-value=0.00063 Score=62.95 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.3
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.+|+++++|++++.+++ .. ...++..|+.+.+ .|.+||+++|...
T Consensus 302 ~~p~~lllDEpt~~LD~--------~~----~~~~~~~l~~l~~-~g~tvi~itH~~~ 346 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDT--------EN----KEKIASVLKELER-LNKVIVFITHDRE 346 (365)
T ss_dssp TTCCEEEEESCCTTSCH--------HH----HHHHHHHHHGGGG-SSSEEEEEESCHH
T ss_pred CCCCEEEEeCCCccCCH--------HH----HHHHHHHHHHHHh-CCCEEEEEecchH
Confidence 57999999999997763 22 2366777777764 4899999999765
No 175
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.57 E-value=0.00017 Score=65.57 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=27.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
|.++.|+|++|+|||+|+.+++... +++|++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~-----------~~~~~~~~ 63 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER-----------PGILIDCR 63 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS-----------SEEEEEHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc-----------CcEEEEee
Confidence 4799999999999999999886442 28899864
No 176
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.56 E-value=8.5e-05 Score=71.58 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=32.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+..+.-++|+|.+|||||+++..++...+.....+ .-.++.+|..+
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~--~v~l~liDpK~ 209 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPE--DVRFIMIDPKM 209 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTT--TEEEEEECCSS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCc--eEEEEEECCch
Confidence 56678899999999999999999877655432221 22455566553
No 177
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.53 E-value=0.0001 Score=69.97 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=46.7
Q ss_pred hhhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 97 AQRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 97 ~~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+.......+.||...||.+ . -+.+|+++.|.|++|||||||+..++... .++ ..++.+.++.
T Consensus 133 ~~~~v~~~~~tg~~vld~v-l-~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~--~~~-----~G~i~~~G~r 194 (438)
T 2dpy_A 133 QRTPIEHVLDTGVRAINAL-L-TVGRGQRMGLFAGSGVGKSVLLGMMARYT--RAD-----VIVVGLIGER 194 (438)
T ss_dssp TSCCCCSBCCCSCHHHHHH-S-CCBTTCEEEEEECTTSSHHHHHHHHHHHS--CCS-----EEEEEEESCC
T ss_pred EEeccceecCCCceEEeee-E-EecCCCEEEEECCCCCCHHHHHHHHhccc--CCC-----eEEEEEecee
Confidence 3334445677899999999 4 79999999999999999999988776443 222 3477777764
No 178
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.53 E-value=0.00031 Score=71.13 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHc
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
|+++.|+||+|+|||||+.+++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 9999999999999999999987643
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.52 E-value=0.0002 Score=68.12 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=60.6
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDH 202 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (342)
+.-+.|+|+||+|||+|+..++....... .+.+++|++.+. + ...+...+. .+ ...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~----~~~~v~~v~~~~-~----~~~~~~~~~-------~~-------~~~- 185 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE----PDLRVMYITSEK-F----LNDLVDSMK-------EG-------KLN- 185 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC----CSSCEEEEEHHH-H----HHHHHHHHH-------TT-------CHH-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC----CCCeEEEeeHHH-H----HHHHHHHHH-------cc-------cHH-
Confidence 56799999999999999998876543210 145689988753 1 111111110 00 000
Q ss_pred HHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Q 019381 203 QSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272 (342)
Q Consensus 203 ~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~ 272 (342)
.+ .... ..++++++||++..+.... .. ...++..+..+. +.+..+|++++.
T Consensus 186 --~~----~~~~-~~~~~vL~IDEi~~l~~~~------~~-----q~~l~~~l~~l~-~~~~~iIitt~~ 236 (440)
T 2z4s_A 186 --EF----REKY-RKKVDILLIDDVQFLIGKT------GV-----QTELFHTFNELH-DSGKQIVICSDR 236 (440)
T ss_dssp --HH----HHHH-TTTCSEEEEECGGGGSSCH------HH-----HHHHHHHHHHHH-TTTCEEEEEESS
T ss_pred --HH----HHHh-cCCCCEEEEeCcccccCCh------HH-----HHHHHHHHHHHH-HCCCeEEEEECC
Confidence 11 1111 1268999999998874310 01 124555555543 347788887765
No 180
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.52 E-value=9.4e-05 Score=70.44 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=30.0
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 118 GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 118 GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
|+..+..-++|+||||+|||+++..++.... +...++++..
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--------~~~~~~v~~~ 202 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSS 202 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--------SSEEEEECCC
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHcC--------CCCEEEEeHH
Confidence 3455667799999999999999998876541 2346666654
No 181
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.51 E-value=4.8e-05 Score=63.36 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=30.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
++++|+++.|.|+|||||||++..++.. . +.+.++++++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~-------~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P-------GVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S-------SSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c-------CCCeEEEccc
Confidence 5889999999999999999999987632 1 2246777764
No 182
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=97.49 E-value=0.0002 Score=49.51 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhh
Q 019381 34 SGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASK 83 (342)
Q Consensus 34 ~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 83 (342)
.|+++..+.+|.++||.|++++...+..+|..+.|+++.++.+++..+++
T Consensus 13 ~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 13 EGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp TTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999998876
No 183
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.49 E-value=0.00043 Score=65.54 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=33.7
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC-CCceEEEecCC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG-EGKAMYIDAEG 167 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~-~~~vl~i~~e~ 167 (342)
..++.++|++|+||||++..+|...+. . +.+|+.+++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~------~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLRE------KHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHH------TSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------hcCCeEEEEecCC
Confidence 468889999999999999999987765 4 67899999874
No 184
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.47 E-value=0.00024 Score=65.81 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=51.7
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCC-CCCC-CCceEEEecCCCC-CH-HHHHHHHHHc-CCChhhhhcceeEeec
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLD-QGGG-EGKAMYIDAEGTF-RP-QRLLQIADRY-GLNGADVLENVAYARA 197 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~-~g~~-~~~vl~i~~e~~~-~~-~rl~~~~~~~-~~~~~~~~~~i~~~~~ 197 (342)
+..+.|+|+||+|||+++..++........ ..+. +..++|++..... +. ..+..++..+ +.... ...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~ 116 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP--------KHG 116 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC--------SSS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC--------CCC
Confidence 458999999999999999988765422100 0001 4568888854321 22 2223333333 21110 001
Q ss_pred CCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc
Q 019381 198 YNTDHQSRLLLEAASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 198 ~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~ 232 (342)
.+.. ..+..+...+...+. +||||++..+..
T Consensus 117 ~~~~---~~~~~l~~~l~~~~~-vlilDEi~~l~~ 147 (384)
T 2qby_B 117 INLG---EYIDKIKNGTRNIRA-IIYLDEVDTLVK 147 (384)
T ss_dssp SCTH---HHHHHHHHHHSSSCE-EEEEETTHHHHH
T ss_pred CCHH---HHHHHHHHHhccCCC-EEEEECHHHhcc
Confidence 1112 223333344433444 999999988743
No 185
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.47 E-value=0.00033 Score=61.16 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-+++| +.|+||||+|||+|+..++..
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 45667 999999999999999987754
No 186
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.46 E-value=0.00087 Score=56.36 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.8
Q ss_pred EEEecCCCCChhHHHHHHHHHc
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+.|+|++|+|||+++..++...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999887654
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=0.00024 Score=65.18 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEecCCCCChhHHHHHHHHHcc
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTCQ 148 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~~ 148 (342)
+.|+||||+||||++..++....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999998876443
No 188
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.46 E-value=0.00058 Score=63.74 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=55.0
Q ss_pred CCcEEEE--ecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCH-HHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 122 TGSITEI--YGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP-QRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 122 ~G~l~~I--~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~-~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
.+..+.| +|++|+|||+++..++..........+.+..++|++....... .-+..++..++..... ...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~ 120 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQV--------RGA 120 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCC--------TTC
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCC--------CCC
Confidence 4567888 9999999999999887654321000001346889986433333 3344555555432110 011
Q ss_pred CHHHHHHHHHHHHHHhH-hcCceEEEEecccccc
Q 019381 199 NTDHQSRLLLEAASMMV-ETRFALMIVDSATALY 231 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~-~~~~~lvviD~l~~l~ 231 (342)
+... .+..+...+. ..++-+||||++..+.
T Consensus 121 ~~~~---~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 121 PALD---ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp CHHH---HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred CHHH---HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 2222 2233333332 2457899999998874
No 189
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=97.45 E-value=0.0002 Score=49.36 Aligned_cols=54 Identities=33% Similarity=0.465 Sum_probs=50.1
Q ss_pred HhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHhhh
Q 019381 31 LQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKL 84 (342)
Q Consensus 31 l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (342)
++.+|+++....+|..+||.|++++...+.++|..+.|++++.+.++...+++.
T Consensus 9 ~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 9 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999999999999999999999998888765
No 190
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00038 Score=67.53 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=62.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNT 200 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (342)
++...++|+||||+|||+++..++... +..+++++.........+..... .......+..
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l---------~~~~i~in~s~~~~~~~~~~~i~-------~~~~~~~~~~---- 134 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---------GYDILEQNASDVRSKTLLNAGVK-------NALDNMSVVG---- 134 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---------TCEEEEECTTSCCCHHHHHHTGG-------GGTTBCCSTT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeCCCcchHHHHHHHHH-------HHhccccHHH----
Confidence 355689999999999999999887654 34688887765433322211111 0000000000
Q ss_pred HHHHHHHHHHH-HHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Q 019381 201 DHQSRLLLEAA-SMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272 (342)
Q Consensus 201 ~~~~~~l~~l~-~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~ 272 (342)
.+..+. ......+..+||||++..+..... ..+..|..+.++.++.+|+++..
T Consensus 135 -----~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------------~~l~~L~~~l~~~~~~iIli~~~ 188 (516)
T 1sxj_A 135 -----YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------------GGVGQLAQFCRKTSTPLILICNE 188 (516)
T ss_dssp -----TTTC----CCSSTTSEEEEECSGGGCCTTST--------------THHHHHHHHHHHCSSCEEEEESC
T ss_pred -----HHhhhhhhhhccCCCeEEEEECCCccchhhH--------------HHHHHHHHHHHhcCCCEEEEEcC
Confidence 000000 001124578999999988754211 12344555556678888888754
No 191
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.41 E-value=6.5e-05 Score=64.40 Aligned_cols=35 Identities=17% Similarity=-0.064 Sum_probs=22.9
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.|+.+-. -+++|+++.|+||+|||||||+..++..
T Consensus 12 ~l~~isl-~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 12 SGLVPRG-SMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCce-ecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4566665 7899999999999999999999987653
No 192
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.40 E-value=0.0016 Score=61.78 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=42.0
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHccc
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQL 149 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~ 149 (342)
....+.||+..+|-++. +-+|+-..|.|++|+|||+|+.+++.+.+.
T Consensus 133 ~~e~l~TGir~ID~l~p--igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~ 179 (482)
T 2ck3_D 133 EQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAK 179 (482)
T ss_dssp CCCEECCSCHHHHHHSC--EETTCEEEEEECTTSSHHHHHHHHHHHTTT
T ss_pred cCcCCccceEEEecccc--cccCCeeeeecCCCCChHHHHHHHHHhhHh
Confidence 45689999999999984 889999999999999999999999887654
No 193
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.40 E-value=0.0001 Score=66.47 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=32.1
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+.|+.+.. .+++|+++.|.||||||||||+..++...
T Consensus 114 ~vL~~vsl-~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLK-GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHH-TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceE-EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 46777777 89999999999999999999999876543
No 194
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.40 E-value=8e-05 Score=63.15 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-+++|+++.|.||||||||||+..++..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999999987643
No 195
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.39 E-value=0.0021 Score=61.16 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=42.1
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHccc
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQL 149 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~ 149 (342)
....+.||+..+|-++. +-+|+-+.|.|++|+|||+|+.+++.+.+.
T Consensus 145 ~~e~l~TGirvID~l~p--igkGqr~gIfgg~GvGKT~L~~~l~~~~a~ 191 (498)
T 1fx0_B 145 KLSIFETGIKVVNLLAP--YRRGGKIGLFGGAGVGKTVLIMELINNIAK 191 (498)
T ss_dssp CCCCCCCSCTTHHHHSC--CCTTCCEEEEECSSSSHHHHHHHHHHHTTT
T ss_pred cccccccceeEeeeecc--cccCCeEEeecCCCCCchHHHHHHHHHHHh
Confidence 35679999999999984 889999999999999999999999887654
No 196
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=97.39 E-value=0.0016 Score=61.92 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=69.9
Q ss_pred hccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH
Q 019381 99 RLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 99 ~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
......+.||+..+|.++. +-+|+-..|.|++|+|||++++....+... .+..++|.-.-.. ...+.++.
T Consensus 140 ~~v~epl~TGikaID~l~P--igrGQR~~Ifg~~g~GKT~l~l~~I~n~~~------~dv~~V~~~IGeR--~~ev~e~~ 209 (513)
T 3oaa_A 140 QSVDQPVQTGYKAVDSMIP--IGRGQRELIIGDRQTGKTALAIDAIINQRD------SGIKCIYVAIGQK--ASTISNVV 209 (513)
T ss_dssp CCCCCBCCCSCHHHHHHSC--CBTTCBCEEEESSSSSHHHHHHHHHHTTSS------SSCEEEEEEESCC--HHHHHHHH
T ss_pred CCcCcccccceeeeccccc--cccCCEEEeecCCCCCcchHHHHHHHhhcc------CCceEEEEEecCC--hHHHHHHH
Confidence 3445688999999999984 889999999999999999997655444322 2334667654432 33444444
Q ss_pred HHcCCChhhhhccee-EeecCCHHHHHHH------HHHHHHHhHhcCceEEEEecccccc
Q 019381 179 DRYGLNGADVLENVA-YARAYNTDHQSRL------LLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 179 ~~~~~~~~~~~~~i~-~~~~~~~~~~~~~------l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
+.+. ....+++-. +....+..-.... +...+.+.....--|+++|+++...
T Consensus 210 ~~l~--~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 267 (513)
T 3oaa_A 210 RKLE--EHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQA 267 (513)
T ss_dssp HHHH--HHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHH
T ss_pred HHHh--hcCcccceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHH
Confidence 4321 112233333 3333221111111 1222233222345688999998763
No 197
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.38 E-value=0.0015 Score=55.52 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.5
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcc
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQ 148 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~ 148 (342)
..+.|+|++|+|||+++..++....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3899999999999999998876543
No 198
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.37 E-value=0.0012 Score=59.06 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=28.7
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
++.-++|+||||+|||+++..++......... ...++++++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~--~~~~~~~~~~~ 108 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYV--RKGHLVSVTRD 108 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSS--SSCCEEEECGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCc--CCCcEEEEcHH
Confidence 45569999999999999999877654321100 13357777643
No 199
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.37 E-value=0.00016 Score=73.35 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=60.9
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeec
Q 019381 118 GGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARA 197 (342)
Q Consensus 118 GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 197 (342)
.|+.+..=++++||||||||.++..+|...- .-|++... + .+...+- .
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~-----------~~f~~v~~---~----~l~s~~v--------------G 553 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----------ANFISIKG---P----ELLTMWF--------------G 553 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTT-----------CEEEECCH---H----HHHTTTC--------------S
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhC-----------CceEEecc---c----hhhcccc--------------c
Confidence 4676666789999999999999998775432 23343321 1 1111111 0
Q ss_pred CCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCC-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Q 019381 198 YNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITN 270 (342)
Q Consensus 198 ~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~-~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~ 270 (342)
.+. ..+..+........|.+|+||++-+++..-.... ++.....+.+..++..+..+....++.||.++
T Consensus 554 ese----~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aT 623 (806)
T 3cf2_A 554 ESE----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623 (806)
T ss_dssp SCH----HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-
T ss_pred hHH----HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeC
Confidence 111 1233333344456799999999999875321110 11112223456666666665544455555443
No 200
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.00054 Score=59.14 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+..|+.+.+.|++|||||+++..++.........+ .+..+++....
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~-~~~~~l~~~p~ 118 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRA-AECNIVVTQPR 118 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCG-GGCEEEEEESS
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCC-CceEEEEeccc
Confidence 344578999999999999988776665443321110 12357777654
No 201
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.35 E-value=0.00014 Score=59.13 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=28.3
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++.+-. -+++|+++.|.||+|||||||+..++..
T Consensus 23 l~~vsl-~i~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 23 EILLKL-HTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp HHHHHH-CCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred Hhcccc-ccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 444444 6899999999999999999999987644
No 202
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.34 E-value=0.00014 Score=68.95 Aligned_cols=38 Identities=26% Similarity=0.177 Sum_probs=32.0
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.++.|+|++|+||||++..++..... .+.+|+++++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~------~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK------RGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH------HHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEeccc
Confidence 58999999999999999999877654 356899998863
No 203
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.33 E-value=0.00042 Score=66.74 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=28.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+++| ++|+||||+|||+|+..++... +.+.++++..
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~---------~~~~i~i~g~ 98 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEA---------RVPFITASGS 98 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHT---------TCCEEEEEGG
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHh---------CCCEEEEehh
Confidence 45666 9999999999999999877543 2357788764
No 204
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.33 E-value=0.00011 Score=61.82 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+.+|+++.|.||+||||||++..++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 467999999999999999999987654
No 205
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.30 E-value=0.0015 Score=62.39 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=70.8
Q ss_pred ccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~ 179 (342)
.....+.||+..+|.++. +-+|+-..|.|++|+|||++++....+... .+..++|.-.... ...+.++.+
T Consensus 142 ~v~epl~TGiraID~l~P--igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~------~dv~~V~~~iGeR--~~Ev~~~~~ 211 (507)
T 1fx0_A 142 SVYEPLQTGLIAIDAMIP--VGRGQRELIIGDRQTGKTAVATDTILNQQG------QNVICVYVAIGQK--ASSVAQVVT 211 (507)
T ss_dssp CCCSBCCCSCTTTTTTSC--CBTTCBCBEEESSSSSHHHHHHHHHHTCCT------TTCEEEEEEESCC--HHHHHHHHH
T ss_pred ccCCcccccceecccccc--cccCCEEEEecCCCCCccHHHHHHHHHhhc------CCcEEEEEEcCCC--chHHHHHHH
Confidence 345678999999999984 889999999999999999997755554432 2334566654432 444555555
Q ss_pred HcCCChhhhhcceeEee-cCCH---HH---HHHHHHHHHHHhHhcCceEEEEeccccc
Q 019381 180 RYGLNGADVLENVAYAR-AYNT---DH---QSRLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 180 ~~~~~~~~~~~~i~~~~-~~~~---~~---~~~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
.+. ....+++-.++. ..+. .+ ....+...+.+.....--|+++|+++.+
T Consensus 212 ~~~--~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 212 NFQ--ERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQ 267 (507)
T ss_dssp HTG--GGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHH--hcCccccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 442 123444433332 2221 11 1112223333333334568899998865
No 206
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.30 E-value=0.00013 Score=60.40 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-.+|+++.|+||||||||||+..++..
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999987654
No 207
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.29 E-value=0.00016 Score=60.91 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=34.2
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
...|+.-- -.++|+++.|.|+|||||||++..++..... .+..++|++++
T Consensus 13 ~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~------~G~~~~~~d~d 62 (200)
T 3uie_A 13 EKVDRQRL-LDQKGCVIWVTGLSGSGKSTLACALNQMLYQ------KGKLCYILDGD 62 (200)
T ss_dssp CHHHHHHH-HTSCCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEHH
T ss_pred CHHHHHHh-cCCCCeEEEEECCCCCCHHHHHHHHHHHHHh------cCceEEEecCc
Confidence 33444333 3468999999999999999999988754322 13334578754
No 208
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.29 E-value=0.0013 Score=62.84 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=70.3
Q ss_pred hhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHH
Q 019381 98 QRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI 177 (342)
Q Consensus 98 ~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~ 177 (342)
+......+.||+..+|.++. +-+|+-..|.|++|+|||++++...++... .+..++|.-.... ...+.++
T Consensus 152 R~~v~epl~TGiraID~l~P--igrGQR~~I~g~~g~GKT~Lal~~I~~~~~------~dv~~V~~~IGeR--~~Ev~e~ 221 (515)
T 2r9v_A 152 RKPVDTPLQTGIKAIDSMIP--IGRGQRELIIGDRQTGKTAIAIDTIINQKG------QGVYCIYVAIGQK--KSAIARI 221 (515)
T ss_dssp BCCCCSEECCSCHHHHHHSC--EETTCBEEEEEETTSSHHHHHHHHHHTTTT------TTEEEEEEEESCC--HHHHHHH
T ss_pred ccCCCcchhcCccccccccc--cccCCEEEEEcCCCCCccHHHHHHHHHhhc------CCcEEEEEEcCCC--cHHHHHH
Confidence 33445678999999999994 889999999999999999997754444432 1223566654432 3444444
Q ss_pred HHHcCCChhhhhcceeEe-ecCCHHHHHHH------HHHHHHHhHhcCceEEEEecccccc
Q 019381 178 ADRYGLNGADVLENVAYA-RAYNTDHQSRL------LLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~------l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
.+.+. ....+++-.++ ...+..-.... +...+.+.....--|+++|+++.+.
T Consensus 222 ~~~~~--~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A 280 (515)
T 2r9v_A 222 IDKLR--QYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHA 280 (515)
T ss_dssp HHHHH--HTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HHHHH--hCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHH
Confidence 44332 11234443333 33222111111 1222223222335588999998763
No 209
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.28 E-value=0.0016 Score=57.36 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=22.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-++..-+.|+||||+|||+++..++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 445567999999999999999988765
No 210
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.27 E-value=0.00013 Score=63.50 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=23.9
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
...|+.+.. -+++|.++.|.|++|||||||+..++..
T Consensus 12 ~~~l~~isl-~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 12 DLGTENLYF-QSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceeecceec-cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345677666 7899999999999999999999987653
No 211
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0016 Score=58.89 Aligned_cols=108 Identities=13% Similarity=-0.003 Sum_probs=58.2
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCC-CCceEEEecCCCCCH-HHHHHHHHHcCCChhhhh
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGG-EGKAMYIDAEGTFRP-QRLLQIADRYGLNGADVL 189 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~-~~~vl~i~~e~~~~~-~rl~~~~~~~~~~~~~~~ 189 (342)
|...+.++ ++..+.|+|+||+|||+++..++.........++. .-.++|+++..-.+. ..+..+++.+...
T Consensus 36 L~~~i~~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~----- 108 (318)
T 3te6_A 36 IYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE----- 108 (318)
T ss_dssp HHHHHHTT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC-----
T ss_pred HHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC-----
Confidence 44455433 45678999999999999999987765432111111 236788987653333 3344555554321
Q ss_pred cceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEecccccc
Q 019381 190 ENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 190 ~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
+ .........+...+..+. -....+.+|++|++..+.
T Consensus 109 -~--~~~~~~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 109 -N--LCGDISLEALNFYITNVP--KAKKRKTLILIQNPENLL 145 (318)
T ss_dssp -C----CCCCHHHHHHHHHHSC--GGGSCEEEEEEECCSSSC
T ss_pred -C--CCchHHHHHHHHHHHHhh--hccCCceEEEEecHHHhh
Confidence 0 111112222222222110 023457899999998875
No 212
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.26 E-value=0.00058 Score=61.27 Aligned_cols=40 Identities=28% Similarity=0.178 Sum_probs=30.4
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+...+.|+||||+|||+++..++..... .+.++++++...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~------~~~~~~~~~~~~ 85 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRIDMTE 85 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS------CGGGEEEEEGGG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC------CCcceEEeeccc
Confidence 3457999999999999999988765432 245688888653
No 213
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=97.25 E-value=0.0048 Score=59.65 Aligned_cols=71 Identities=18% Similarity=0.382 Sum_probs=52.0
Q ss_pred ccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~ 179 (342)
.....+.||+..+|.++. +-+|+-..|.|++|+|||+++.+++.... ..-++|.-.-. ....+.++.+
T Consensus 211 ~~~epl~TGirvID~l~P--igrGqr~~Ifgg~g~GKT~L~~~ia~~~~--------~~v~V~~~iGE--R~~Ev~e~~~ 278 (600)
T 3vr4_A 211 NPDVPMITGQRVIDTFFP--VTKGGAAAVPGPFGAGKTVVQHQIAKWSD--------VDLVVYVGCGE--RGNEMTDVVN 278 (600)
T ss_dssp CCCSBCCCCCHHHHHHSC--CBTTCEEEEECCTTSCHHHHHHHHHHHSS--------CSEEEEEEEEE--CHHHHHHHHH
T ss_pred CCCceecccchhhhccCC--ccCCCEEeeecCCCccHHHHHHHHHhccC--------CCEEEEEEecc--cHHHHHHHHH
Confidence 345678999999999984 88999999999999999999999876432 12355554332 2455556666
Q ss_pred HcC
Q 019381 180 RYG 182 (342)
Q Consensus 180 ~~~ 182 (342)
.+.
T Consensus 279 ~~~ 281 (600)
T 3vr4_A 279 EFP 281 (600)
T ss_dssp HTT
T ss_pred HHH
Confidence 653
No 214
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.24 E-value=0.001 Score=63.39 Aligned_cols=121 Identities=12% Similarity=0.186 Sum_probs=69.2
Q ss_pred hccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHH
Q 019381 99 RLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA 178 (342)
Q Consensus 99 ~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~ 178 (342)
......+.||+..+|.++. +-+|+-..|.|++|+|||++++....+... .+..++|.-.... ...+.++.
T Consensus 140 ~~v~epl~TGiraID~l~P--igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~------~dv~~V~~~iGeR--~~Ev~~~~ 209 (502)
T 2qe7_A 140 KSVHEPLQTGIKAIDSMIP--IGRGQRELIIGDRQTGKTTIAIDTIINQKG------QDVICIYVAIGQK--QSTVAGVV 209 (502)
T ss_dssp CCCCSBCCCSCHHHHHSSC--CBTTCBCEEEECSSSCHHHHHHHHHHGGGS------CSEEEEEEEESCC--HHHHHHHH
T ss_pred cCCCCccccceeecccccc--cccCCEEEEECCCCCCchHHHHHHHHHhhc------CCcEEEEEECCCc--chHHHHHH
Confidence 3445678999999999994 889999999999999999997755454432 1223566654332 33344444
Q ss_pred HHcCCChhhhhccee-EeecCCHHHHHHH------HHHHHHHhHhcCceEEEEecccccc
Q 019381 179 DRYGLNGADVLENVA-YARAYNTDHQSRL------LLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 179 ~~~~~~~~~~~~~i~-~~~~~~~~~~~~~------l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
+.+.- ...+++-. +....+..-.... +...+.+.....--++++|+++.+.
T Consensus 210 ~~~~~--~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A 267 (502)
T 2qe7_A 210 ETLRQ--HDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQA 267 (502)
T ss_dssp HHHHH--TTCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred HHHhh--CCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 33310 12233333 3333222111111 1222223222335588999998764
No 215
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.24 E-value=0.00016 Score=60.80 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=23.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
+++|.++.|+|+|||||||++..++.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999998764
No 216
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.23 E-value=0.00075 Score=59.78 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-+++| +.|+||||+|||||+..++..
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 45667 899999999999999987654
No 217
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.23 E-value=0.002 Score=56.47 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.1
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++.++.|+|.|||||||++..++..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998764
No 218
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.22 E-value=0.00017 Score=61.94 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.+++|+++.|.||||||||||+..++.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999999999997654
No 219
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.21 E-value=0.002 Score=58.55 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=28.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.++.|+|++|+|||+|+.+++.... ..++|++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---------~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---------LPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---------CCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---------CCEEEEEchh
Confidence 5999999999999999999876532 2478998753
No 220
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.21 E-value=0.00017 Score=61.13 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.++|+++.|.|+||||||||+..++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999977643
No 221
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.20 E-value=0.0029 Score=57.11 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=27.5
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.++.++||||+|||+++..++... +..+++++...
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l---------~~~~~~i~~~~ 83 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV---------NADMMFVNGSD 83 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT---------TEEEEEEETTT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh---------CCCEEEEcccc
Confidence 578999999999999999887543 23588888653
No 222
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.18 E-value=0.0007 Score=53.80 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=25.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
+.-+.|.|+||+|||+++..++..... .+.+.+ +++.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~------~~~~~v-~~~~ 60 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRN------AQGEFV-YREL 60 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTT------TTSCCE-EEEC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCc------cCCCEE-EECC
Confidence 345899999999999999987643322 234555 6654
No 223
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=97.16 E-value=0.0019 Score=61.18 Aligned_cols=123 Identities=12% Similarity=0.116 Sum_probs=71.3
Q ss_pred cccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHH
Q 019381 101 EIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180 (342)
Q Consensus 101 ~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~ 180 (342)
....+.||+..+|.++. +-+|+-..|.|++|+|||+|+.++|.....+.+ +.+..++|.-.... ...+.++.+.
T Consensus 132 ~~e~l~TGir~ID~l~p--igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~--~~~~~~V~~~iGER--~~Ev~e~~~~ 205 (469)
T 2c61_A 132 PKDFIQTGISTIDGTNT--LVRGQKLPIFSASGLPHNEIALQIARQASVPGS--ESAFAVVFAAMGIT--NEEAQYFMSD 205 (469)
T ss_dssp CCSBCBCSCHHHHTTSC--CBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTC--SSCEEEEEEEEEEC--HHHHHHHHHH
T ss_pred cccccceeeEeeeeeec--cccCCEEEEECCCCCCHHHHHHHHHHHHhhccC--CCCcEEEEEEccCC--cHHHHHHHHH
Confidence 34678999999999984 889999999999999999999999887654211 01123555543322 3334444433
Q ss_pred cCCChhhhhccee-EeecCCHHHHHH------HHHHHHHHhH-hcCceEEEEecccccc
Q 019381 181 YGLNGADVLENVA-YARAYNTDHQSR------LLLEAASMMV-ETRFALMIVDSATALY 231 (342)
Q Consensus 181 ~~~~~~~~~~~i~-~~~~~~~~~~~~------~l~~l~~~~~-~~~~~lvviD~l~~l~ 231 (342)
+. ....+++-. +....+..-... .+..++.+.. ...--++++|+++.+.
T Consensus 206 ~~--~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A 262 (469)
T 2c61_A 206 FE--KTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYA 262 (469)
T ss_dssp HH--HHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHH
T ss_pred HH--hccCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHH
Confidence 32 112344433 333222211111 1222233331 2345588999988774
No 224
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.16 E-value=0.0029 Score=57.48 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-++|+|+||+|||+++..++..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999988654
No 225
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.15 E-value=0.00035 Score=57.48 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=28.7
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
++|.++.|+|++||||||++..++..... .+.++++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~------~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC------HGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh------CCCcEEEECC
Confidence 67999999999999999999987654211 1345777764
No 226
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.15 E-value=0.0019 Score=61.42 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHHc
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.-++|+||||+|||+++..++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999999999887543
No 227
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.14 E-value=0.00029 Score=58.38 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=32.4
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
||.-.. ..+|.++.|+|.|||||||++..++..... .+..+.+++.+
T Consensus 4 ~~~~~~--~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~------~~~~~~~~~~d 50 (186)
T 2yvu_A 4 LTTYKC--IEKGIVVWLTGLPGSGKTTIATRLADLLQK------EGYRVEVLDGD 50 (186)
T ss_dssp ----CC--CSCCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEHH
T ss_pred cccccc--cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEeeHH
Confidence 455332 357899999999999999999988765432 34567788653
No 228
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.13 E-value=0.00054 Score=57.67 Aligned_cols=41 Identities=24% Similarity=0.177 Sum_probs=31.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.++|.++.|+|++||||||++..++..... .++.+.+++.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~------~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE------QGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH------TTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh------cCCeEEEeccC
Confidence 567899999999999999999987653321 24567777654
No 229
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.11 E-value=0.00012 Score=74.85 Aligned_cols=123 Identities=13% Similarity=0.199 Sum_probs=65.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAY 198 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 198 (342)
|+.++..++|+||||+|||+++..+|...-. +.++++...-... +.. .
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~---------~~i~v~~~~l~~~----------------------~~g-~ 554 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIKGPELLTM----------------------WFG-E 554 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC---------CCCCCCCSSSTTC----------------------CTT-T
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCC---------CEEEEechHhhhh----------------------hcC-c
Confidence 7789999999999999999999988765422 2444443221000 000 0
Q ss_pred CHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcc-hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Q 019381 199 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE-LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 277 (342)
Q Consensus 199 ~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~-~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~ 277 (342)
....+..++ .......+.++++|++..+........++ .....+.+..++..|..+....++.||++++.....+
T Consensus 555 ~~~~i~~~f----~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 555 SEANVREIF----DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp SSHHHHHHH----HHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGS
T ss_pred cHHHHHHHH----HHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCC
Confidence 011122222 22334567899999998876532111111 1122233455555555555556777887776544333
No 230
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.11 E-value=0.00025 Score=59.57 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=23.1
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++.+.. .+++|.++.|+|+|||||||++..++..
T Consensus 15 ~~~~~~-~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 15 TENLYF-QSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceeE-ecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 444444 6788999999999999999999988754
No 231
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.10 E-value=0.0029 Score=60.45 Aligned_cols=126 Identities=14% Similarity=0.155 Sum_probs=69.6
Q ss_pred ccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCC--CCCceEEEecCCCCCHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGG--GEGKAMYIDAEGTFRPQRLLQI 177 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~--~~~~vl~i~~e~~~~~~rl~~~ 177 (342)
.....+.||+..+|.++. +-+|+-..|.|++|+|||++++....+.......++ .+..++|.-.... ...+.++
T Consensus 141 ~v~epl~TGiraID~l~P--igrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR--~~Ev~~~ 216 (510)
T 2ck3_A 141 SVREPMQTGIKAVDSLVP--IGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQK--RSTVAQL 216 (510)
T ss_dssp CCCSBCCCSCHHHHHHSC--CBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCC--HHHHHHH
T ss_pred ccCccccccceeeccccc--cccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCC--cHHHHHH
Confidence 345678999999999994 889999999999999999997654444443100000 1223666654332 3344444
Q ss_pred HHHcCCChhhhhccee-EeecCCHHHHHHH------HHHHHHHhHhcCceEEEEecccccc
Q 019381 178 ADRYGLNGADVLENVA-YARAYNTDHQSRL------LLEAASMMVETRFALMIVDSATALY 231 (342)
Q Consensus 178 ~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~------l~~l~~~~~~~~~~lvviD~l~~l~ 231 (342)
.+.+.- ...+++-. +....+..-.... +...+.+.....--|+++|+++.+.
T Consensus 217 ~~~~~~--~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 275 (510)
T 2ck3_A 217 VKRLTD--ADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 275 (510)
T ss_dssp HHHHHH--TTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HHHHHh--cCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHH
Confidence 433311 12333333 3333222111111 1222233222335588999998764
No 232
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.10 E-value=0.00021 Score=60.16 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=21.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+++|.++.|+||||||||||+..++..
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999987653
No 233
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=97.10 E-value=0.0029 Score=60.91 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=71.2
Q ss_pred ccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~ 179 (342)
.....+.||+..+|.++. +-+|+-..|.|++|+|||+++.+++.... ..-++|.-....- ..+.++.+
T Consensus 206 ~~~epl~TGirvID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~~--------~~~~V~~~iGER~--~Ev~e~~~ 273 (588)
T 3mfy_A 206 PPEVPLITGQRVIDTFFP--QAKGGTAAIPGPAGSGKTVTQHQLAKWSD--------AQVVIYIGCGERG--NEMTDVLE 273 (588)
T ss_dssp CSCSEECCSCHHHHHHSC--EETTCEEEECSCCSHHHHHHHHHHHHHSS--------CSEEEEEECCSSS--SHHHHHHH
T ss_pred cCCcccccCcchhhccCC--cccCCeEEeecCCCCCHHHHHHHHHhccC--------CCEEEEEEecccH--HHHHHHHH
Confidence 345678899999999984 88999999999999999999999865421 2246666543322 23445555
Q ss_pred HcCC-----ChhhhhcceeEeecCCHH----HHH---HHHHHHHHHhHhcC-ceEEEEeccccccc
Q 019381 180 RYGL-----NGADVLENVAYARAYNTD----HQS---RLLLEAASMMVETR-FALMIVDSATALYR 232 (342)
Q Consensus 180 ~~~~-----~~~~~~~~i~~~~~~~~~----~~~---~~l~~l~~~~~~~~-~~lvviD~l~~l~~ 232 (342)
.+.- .....+++-.++...... +.. ..+..++.+ ...+ --++++|+++.+..
T Consensus 274 ~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyf-rd~G~dVLl~~DsltR~A~ 338 (588)
T 3mfy_A 274 EFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYF-RDMGYDVALMADSTSRWAE 338 (588)
T ss_dssp HTTTCEETTTTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHH-HHTTCEEEEEEECTTTCCC
T ss_pred HHHHhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEeecchHHHHH
Confidence 5532 112345554343332211 111 112222222 2334 34788999997654
No 234
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=97.07 E-value=0.0056 Score=57.73 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=40.7
Q ss_pred ccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcc
Q 019381 100 LEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQ 148 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~ 148 (342)
.....+.||+..+|.++ -+-+|+-..|.|++|+|||+|+.+++....
T Consensus 130 ~~~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 176 (465)
T 3vr4_D 130 YPDEFIQTGISAIDHLN--TLVRGQKLPVFSGSGLPHKELAAQIARQAT 176 (465)
T ss_dssp CCCCBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred CcccccccCceEEeccc--ccccCCEEEEeCCCCcChHHHHHHHHHHHH
Confidence 34567899999999998 488999999999999999999998876554
No 235
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.07 E-value=0.00019 Score=61.82 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=19.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
-+++|+++.|+||+||||||++..++
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 47889999999999999999999876
No 236
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.06 E-value=0.00029 Score=59.22 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=28.7
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.++|+++.|+|+|||||||++..++... +.++++++.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----------g~~~i~~d~ 62 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET-----------GLEFAEADA 62 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH-----------CCEEEEGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh-----------CCeEEcccc
Confidence 3679999999999999999999876432 267787764
No 237
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.04 E-value=0.0015 Score=58.27 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=26.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.-+.|+||||+|||+++..++... +.++++++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l---------~~~~~~i~~~ 84 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA---------NAPFIKVEAT 84 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---------CCCEEEEcch
Confidence 457899999999999999887654 2357777764
No 238
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.04 E-value=0.00033 Score=59.41 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=23.1
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++|.+++|+||||+||||++..++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 57999999999999999999987643
No 239
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.03 E-value=0.00035 Score=57.97 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
|++.+.++.|+|+|||||||++..++..
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5677889999999999999999988754
No 240
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.00 E-value=0.0033 Score=57.10 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=34.1
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.++.+.|..|+||||++.++|...+. .+.+|+.+|++.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~------~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMAR------SGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHH------CCCcEEEEeCCC
Confidence 68899999999999999999988876 578999999985
No 241
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.99 E-value=0.00034 Score=59.12 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
++|+++.|.|++|||||||+..++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999998764
No 242
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.99 E-value=0.00034 Score=59.01 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=31.5
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+..|..++. |+|+...++|+||||+|||++|..++..
T Consensus 45 ~~~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 566777887 7998888999999999999999987654
No 243
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.96 E-value=0.0042 Score=55.89 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=26.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
...+.|+|+||+|||+++..++.... .++++++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~---------~~~~~~~~~ 72 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG---------VNLRVTSGP 72 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT---------CCEEEECTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC---------CCEEEEecc
Confidence 34689999999999999998875432 346666654
No 244
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.0019 Score=58.00 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=19.9
Q ss_pred EEEecCCCCChhHHHHHHHHHc
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+.|+|++|+|||+++..++...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999887654
No 245
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.93 E-value=0.00082 Score=60.65 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=31.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
..+|+++.|+|++|||||||+..++......+ ..+.+.+++...
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~----~~G~i~vi~~d~ 120 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWP----EHRRVELITTDG 120 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST----TCCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC----CCCeEEEEecCC
Confidence 47899999999999999999997764322102 234577776654
No 246
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.93 E-value=0.00057 Score=63.44 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=28.9
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|+.+.. ++++|+++.|.||||+|||||+..++.
T Consensus 158 ~l~~~~~-~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 158 FLKCMVY-NIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHH-CCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhccc-ccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4455555 899999999999999999999998764
No 247
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.93 E-value=0.00044 Score=62.56 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=33.6
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF 169 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~ 169 (342)
+++|+++.|+|++|||||||+..++. .+++..| ...+.|+..+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g--ll~~~~G--~~~v~~v~qd~~~ 132 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA--LLARWDH--HPRVDLVTTDGFL 132 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH--HHHTSTT--CCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh--hccccCC--CCeEEEEecCccC
Confidence 78999999999999999999997654 3333222 1457788766443
No 248
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.92 E-value=0.0032 Score=61.20 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=31.1
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.+-=++|+|.+|||||+++..++...+..... ..-+++.||..+
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP--~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTP--SEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCT--TTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCC--cceEEEEeCCCh
Confidence 34568999999999999999988876653211 123566677664
No 249
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=96.91 E-value=0.0047 Score=59.41 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=39.9
Q ss_pred ccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 100 LEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 100 ~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.....+.||+..+|.++ -+-+|+-..|.|++|+|||+++.+++..
T Consensus 200 ~~~epl~TGirvID~l~--PigrGqr~~Ifg~~g~GKT~l~~~ia~~ 244 (578)
T 3gqb_A 200 DPNTPFLTGMRILDVLF--PVAMGGTAAIPGPFGSGKSVTQQSLAKW 244 (578)
T ss_dssp CSCSEECCSCHHHHTTS--CEETTCEEEECCCTTSCHHHHHHHHHHH
T ss_pred cCCCcccccchhhhhcc--cccCCCEEeeeCCCCccHHHHHHHHHhc
Confidence 34567899999999988 4889999999999999999999998765
No 250
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.90 E-value=0.00051 Score=56.22 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.+|.++.|+|+|||||||++..++... +..+++++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----------CcEEEeCcc
Confidence 468899999999999999999876432 256788764
No 251
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.90 E-value=0.0018 Score=59.76 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=39.4
Q ss_pred cccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHccc
Q 019381 103 IQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQL 149 (342)
Q Consensus 103 ~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~ 149 (342)
..+.||+..+|.++. +-+|+-..|.|++|+|||+++.+++.....
T Consensus 157 e~~~tGiraID~l~P--igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAP--IGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp STTCHHHHHHHHHSC--CBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cchhccchhhhhccc--ccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 467899999999884 889999999999999999999988876543
No 252
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.90 E-value=0.0061 Score=59.44 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=54.3
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH--cccCCCCCCCCCceEEEecCCCC--CH-HHHHHHHHHcCCChhhhhcceeEee
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT--CQLPLDQGGGEGKAMYIDAEGTF--RP-QRLLQIADRYGLNGADVLENVAYAR 196 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~--~~~~~~~g~~~~~vl~i~~e~~~--~~-~rl~~~~~~~~~~~~~~~~~i~~~~ 196 (342)
...++.|+|.+|+||||||.+++.. ..... .-..++|++..... +. .-++.++..++...... .+.-..
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~--~~~~~~ 224 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGI----NYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLL--NFPSVE 224 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT----TBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCT--TCCCCT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc----cCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccc--cccccc
Confidence 4579999999999999999987641 11111 12368899866542 22 33455666665432100 000001
Q ss_pred cCCHHHHHHHHHHHHHHhHhcCceEEEEecccc
Q 019381 197 AYNTDHQSRLLLEAASMMVETRFALMIVDSATA 229 (342)
Q Consensus 197 ~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~ 229 (342)
..+.. .+...+...+...+.-|||+|.+..
T Consensus 225 ~~~~~---~l~~~l~~~L~~~kr~LlVLDdv~~ 254 (549)
T 2a5y_B 225 HVTSV---VLKRMICNALIDRPNTLFVFDDVVQ 254 (549)
T ss_dssp TCCHH---HHHHHHHHHHTTSTTEEEEEEEECC
T ss_pred cccHH---HHHHHHHHHHcCCCcEEEEEECCCC
Confidence 11122 2233344444333367999999865
No 253
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.85 E-value=0.00059 Score=57.57 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
-+++|.++.|+|+|||||||++..++.. . .++.|++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~--~--------~~~~~i~~D~ 55 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH--L--------PNCSVISQDD 55 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT--S--------TTEEEEEGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh--c--------CCcEEEeCCc
Confidence 5778999999999999999999977632 1 1367777664
No 254
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.84 E-value=0.00053 Score=55.89 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.|.++.|+|+|||||||++..++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998764
No 255
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.84 E-value=0.00048 Score=57.16 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
|+++.|+|+|||||||++..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67999999999999999998863
No 256
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.83 E-value=0.0056 Score=55.94 Aligned_cols=43 Identities=12% Similarity=0.002 Sum_probs=33.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
-...|.++.|.|+||+||||++..++..... .++++.+++.+.
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~------~~~~v~v~~~d~ 94 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR------EGLKVAVIAVDP 94 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEECC
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEEeecC
Confidence 3567899999999999999999988765433 356677787664
No 257
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.81 E-value=0.00079 Score=62.20 Aligned_cols=40 Identities=30% Similarity=0.481 Sum_probs=30.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
-+++|++++|+|++|||||||+..++ ...++. .+.+.++.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~--~~~~~~-----~g~I~ie~ 210 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALM--QEIPFD-----QRLITIED 210 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHH--TTSCTT-----SCEEEEES
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHH--hcCCCC-----ceEEEECC
Confidence 56789999999999999999999765 444433 34777764
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.81 E-value=0.00056 Score=56.79 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
|.++.|.||+||||||++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999987643
No 259
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.80 E-value=0.0044 Score=58.43 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=41.6
Q ss_pred hhccccccccCChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcc
Q 019381 98 QRLEIIQITSGSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQ 148 (342)
Q Consensus 98 ~~~~~~~i~tg~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~ 148 (342)
.......+.||+..+|.++. +-+|+-..|.|++|+|||+|+.+++....
T Consensus 124 R~~~~e~l~TGiraID~l~p--igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 124 RRKPEQFIQTGISTIDVMNT--LVRGQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp BCCCCCBCBCSCHHHHTTSC--CBTTCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred ccCccccccCcceeeecccc--cccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 33445678999999999984 88999999999999999999998876544
No 260
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.79 E-value=0.0012 Score=60.26 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=35.1
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.|+.+.. -+.+|+++.|.|+||+|||||+..++.... + .++++.+++.+
T Consensus 44 ~l~~i~~-~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~----~~g~v~i~~~d 92 (337)
T 2qm8_A 44 LIDAVLP-QTGRAIRVGITGVPGVGKSTTIDALGSLLT--A----AGHKVAVLAVD 92 (337)
T ss_dssp HHHHHGG-GCCCSEEEEEECCTTSCHHHHHHHHHHHHH--H----TTCCEEEEEEC
T ss_pred HHHhCCc-ccCCCeEEEEECCCCCCHHHHHHHHHHhhh--h----CCCEEEEEEEc
Confidence 4565554 578899999999999999999998764322 1 24556666543
No 261
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.79 E-value=0.0031 Score=57.12 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=28.4
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
++.|+|++|||||||+..++......+ .++.+.+++.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~----~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWP----DHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTST----TCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccC----CCCeEEEEeecc
Confidence 899999999999999997754332111 234678887765
No 262
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.79 E-value=0.0051 Score=56.57 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=31.9
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
..-++.|+|.||+|||||+..++...+. .+.+|..++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~------~g~kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE------RGHRVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh------CCCceEEEecCC
Confidence 3458999999999999999998876554 467788888774
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.78 E-value=0.00067 Score=57.17 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.+.+|.++.|+|+|||||||++..++...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999887543
No 264
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.77 E-value=0.0014 Score=51.98 Aligned_cols=21 Identities=19% Similarity=0.040 Sum_probs=17.7
Q ss_pred cEEEEecCCCCChhHHHHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia 144 (342)
.-+.|+|+||+|||+++..++
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGC
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 348899999999999998653
No 265
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.76 E-value=0.005 Score=53.04 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=31.5
Q ss_pred EEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
+.|.|..|+||||++.++|...+. .+.+|+.+|.+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS------DYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT------TCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCCC
Confidence 455899999999999999988776 5789999998753
No 266
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.74 E-value=0.006 Score=54.67 Aligned_cols=41 Identities=32% Similarity=0.382 Sum_probs=33.7
Q ss_pred CCcEEEEecC-CCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 122 TGSITEIYGE-FRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 122 ~G~l~~I~G~-~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
++.++.|++. +|+||||++.++|...+. .+.+|++||.+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~------~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQ------SDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHH------TTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHh------CCCcEEEEECCCC
Confidence 3567777775 899999999999988876 4789999999853
No 267
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.74 E-value=0.0014 Score=54.78 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=29.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
..+.|+|+||+|||+|+..++..... .+.+++|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~------~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK------RNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT------TTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEEhH
Confidence 57899999999999999988766543 35678888764
No 268
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.72 E-value=0.0077 Score=54.88 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=39.6
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+.|+.++... .-.++.+.|..|+||||++.++|...+. .+.+|+.+|++.
T Consensus 5 ~~l~~~l~~~--~~~i~~~sgkGGvGKTt~a~~lA~~la~------~g~~vllid~D~ 54 (334)
T 3iqw_A 5 PTLQSILDQR--SLRWIFVGGKGGVGKTTTSCSLAIQLAK------VRRSVLLLSTDP 54 (334)
T ss_dssp SSSHHHHHCT--TCCEEEEECSTTSSHHHHHHHHHHHHTT------SSSCEEEEECCS
T ss_pred ccHHHHhcCC--CeEEEEEeCCCCccHHHHHHHHHHHHHh------CCCcEEEEECCC
Confidence 3456666532 2468899999999999999999988776 578999999984
No 269
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.66 E-value=0.0054 Score=63.11 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=52.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCC-CCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLD-QGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDH 202 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~-~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (342)
.-++|+|+||+|||+++..++........ ....+..+++++...-.. +.. + . ..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-----------g~~---------~-~----g~ 246 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-----------GAK---------Y-R----GE 246 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------------------C
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-----------cCc---------c-c----hH
Confidence 34789999999999999998876532100 001245677776532100 000 0 0 01
Q ss_pred HHHHHHHHHHHhHh-cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Q 019381 203 QSRLLLEAASMMVE-TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV 272 (342)
Q Consensus 203 ~~~~l~~l~~~~~~-~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~ 272 (342)
....+..+...+.. .++.+++||++..+...... .. -..+.+.|+.+..+.++.+|.++..
T Consensus 247 ~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-----~g----~~~~~~~L~~~l~~~~i~~I~at~~ 308 (854)
T 1qvr_A 247 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA-----EG----AVDAGNMLKPALARGELRLIGATTL 308 (854)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEECCC----------------------------HHHHHTTCCCEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc-----cc----hHHHHHHHHHHHhCCCeEEEEecCc
Confidence 11122222222323 35789999999988643110 00 1144556666666677777776543
No 270
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.66 E-value=0.00082 Score=55.42 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.2
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.+|.++.|+|+|||||||++..++..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988743
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.64 E-value=0.0011 Score=54.35 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.3
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+.++.|+|+|||||||++..++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999988754
No 272
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.63 E-value=0.0014 Score=58.42 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=27.7
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
..+.+++|+|+|||||||++..++... +...+++|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~---------~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET---------QGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT---------TTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEec
Confidence 457799999999999999999886532 123677776
No 273
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.63 E-value=0.0019 Score=60.77 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
.+|++++|+||+||||||++..++.. .++. .+.++++..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~--l~~~----~g~I~~~ed 203 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE--LNSS----ERNILTVED 203 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH--HCCT----TSCEEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh--cCCC----CCEEEEecc
Confidence 68999999999999999999976543 2322 345666543
No 274
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.63 E-value=0.0072 Score=55.40 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=36.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.-+.-.++.+.|..|+||||++.++|...+. .+.+|+.+|++.
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~------~G~rVLlvD~D~ 64 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAE------KGLKVVIVSTDP 64 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHH------SSCCEEEEECCT
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 3455668888999999999999999988876 578999999985
No 275
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.62 E-value=0.0011 Score=55.65 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+|.+++|+||+|+|||||+..++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 6899999999999999999988754
No 276
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.58 E-value=0.0011 Score=57.45 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+++++.|.|+|||||||++..++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999988743
No 277
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.012 Score=52.77 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=19.8
Q ss_pred EEEecCCCCChhHHHHHHHHHc
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+.|+||||+|||+++..++...
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999887654
No 278
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.53 E-value=0.004 Score=63.21 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=28.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.+.|+||||+|||+++..++..... .+.+.++++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~------~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG------DEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS------CTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC------CCcceEEEech
Confidence 5899999999999999988765432 34678888864
No 279
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.52 E-value=0.0014 Score=57.29 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++|.++.|.|++||||||++..++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999987643
No 280
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.52 E-value=0.015 Score=50.57 Aligned_cols=37 Identities=27% Similarity=0.210 Sum_probs=30.6
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+....+..|+||||++.++|...+. .+.+|+++|.+.
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~------~g~~VlliD~D~ 41 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQ------LGHDVTIVDADI 41 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHH------TTCCEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHh------CCCcEEEEECCC
Confidence 4455788899999999999988776 467899999875
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.51 E-value=0.0014 Score=54.18 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=21.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
|.++.|+|+|||||||++..++..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988764
No 282
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.51 E-value=0.0017 Score=56.72 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
...+.++.|+|+|||||||++..++... +..+++++.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l---------~~~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF---------QGNIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT---------TTCCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc---------CCCcEEEecH
Confidence 4457799999999999999999886542 1236677765
No 283
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.0012 Score=55.14 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHc
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
|+++.|.|++|+|||||+..++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 6789999999999999999877543
No 284
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.50 E-value=0.0075 Score=50.96 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=25.5
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
++.|.|||||||+|.|..++... +..+||+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----------g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----------GFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----------CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----------CCeEEcHH
Confidence 57899999999999999987543 36788875
No 285
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.50 E-value=0.0014 Score=53.94 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.+.+| +++|+|++||||||++..+..
T Consensus 23 ~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 23 PFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp ECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 46677 999999999999999997654
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.49 E-value=0.0013 Score=53.64 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.8
Q ss_pred cEEEEecCCCCChhHHHHHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.++.|+|+|||||||++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999998874
No 287
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.49 E-value=0.0017 Score=53.72 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.++|..+.|+|+|||||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999988753
No 288
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.48 E-value=0.0016 Score=61.17 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=28.6
Q ss_pred hHhhhcCCCCCCcE--EEEecCCCCChhHHHHHHHH
Q 019381 112 LDKILEGGVETGSI--TEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 112 LD~~l~GGi~~G~l--~~I~G~~GsGKTtl~~~ia~ 145 (342)
|+.+-. -+++|++ +.|+|+||+|||||+..++.
T Consensus 30 L~~vsl-~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 30 DQLVNK-SVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHHHHH-SCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCce-EecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 777776 8999999 99999999999999997764
No 289
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.47 E-value=0.0066 Score=61.69 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=27.9
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
+..|+.++|+|++|||||+++-.++...... .+ .+..++++..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~--~~-~g~~ilvl~P 148 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMP--HL-ENTQVACTQP 148 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCG--GG-GTCEEEEEES
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccc--cC-CCceEEecCc
Confidence 4457899999999999999777665433221 11 1334666654
No 290
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.47 E-value=0.018 Score=52.38 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=45.1
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCC---------------CCCCceEEEecC---CCCCHHHHHHHHHHcCCCh
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQG---------------GGEGKAMYIDAE---GTFRPQRLLQIADRYGLNG 185 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g---------------~~~~~vl~i~~e---~~~~~~rl~~~~~~~~~~~ 185 (342)
..++++||+|+|||+++..++.........+ +....+.+++.+ .......++.+.+.+...+
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~ 104 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHA 104 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhcc
Confidence 3699999999999999999987665432111 112346777765 3345666777776665443
Q ss_pred hhhhcceeEeec
Q 019381 186 ADVLENVAYARA 197 (342)
Q Consensus 186 ~~~~~~i~~~~~ 197 (342)
..--.++.+++.
T Consensus 105 ~~~~~kvviIde 116 (334)
T 1a5t_A 105 RLGGAKVVWVTD 116 (334)
T ss_dssp TTSSCEEEEESC
T ss_pred ccCCcEEEEECc
Confidence 211124455544
No 291
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.47 E-value=0.0014 Score=53.06 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=19.8
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++.|+|+|||||||++..++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988754
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.47 E-value=0.0025 Score=52.53 Aligned_cols=35 Identities=14% Similarity=-0.003 Sum_probs=26.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
++.|.|+|||||||++..++...-. .+..+.++++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~------~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN------QGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT------TTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh------cCceEEEEEC
Confidence 6899999999999999988764321 2345777753
No 293
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.45 E-value=0.0092 Score=49.73 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=49.6
Q ss_pred EEE-ecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChhhhhcceeEeecCCHHHHH
Q 019381 126 TEI-YGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQS 204 (342)
Q Consensus 126 ~~I-~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (342)
+.| .+..|+||||++.++|...+. .+.+|+++|.+...+. ..+. +.... ++.+..... ..+.
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~------~g~~vlliD~D~~~~~---~~~~---~~~~~----~~~~~~~~~-~~l~ 66 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSR------SGYNIAVVDTDPQMSL---TNWS---KAGKA----AFDVFTAAS-EKDV 66 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCTTCHH---HHHH---TTSCC----SSEEEECCS-HHHH
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHH------CCCeEEEEECCCCCCH---HHHH---hcCCC----CCcEEecCc-HHHH
Confidence 444 477899999999999988776 4778999999854222 1222 11111 233333322 3333
Q ss_pred HHHHHHHHHhHhcCceEEEEeccccc
Q 019381 205 RLLLEAASMMVETRFALMIVDSATAL 230 (342)
Q Consensus 205 ~~l~~l~~~~~~~~~~lvviD~l~~l 230 (342)
..+.. + ....++||||.+..+
T Consensus 67 ~~l~~----l-~~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 67 YGIRK----D-LADYDFAIVDGAGSL 87 (206)
T ss_dssp HTHHH----H-TTTSSEEEEECCSSS
T ss_pred HHHHH----h-cCCCCEEEEECCCCC
Confidence 33332 2 235899999987654
No 294
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.41 E-value=0.0018 Score=54.72 Aligned_cols=42 Identities=24% Similarity=0.146 Sum_probs=30.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
.+++|.++.|.|++||||||++..++...-. . .+.++++++.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~--~---~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR--D---RRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH--H---HCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--c---cCCcEEEECC
Confidence 3677899999999999999999987654320 0 1334777764
No 295
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0016 Score=56.93 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=31.1
Q ss_pred CChhhHhhhcCCCCC---CcEEEEecCCCCChhHHHHHHHHH
Q 019381 108 GSRELDKILEGGVET---GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 108 g~~~LD~~l~GGi~~---G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+...|+.+.. -+.+ |+.+.|+|++||||||++..++..
T Consensus 31 ~~~~l~~~~~-~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 31 EQQILKKKAE-EVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -CHHHHHHHH-TTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred cchhhhhhhh-hhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456777766 7888 999999999999999999987753
No 296
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.39 E-value=0.01 Score=51.84 Aligned_cols=39 Identities=23% Similarity=0.140 Sum_probs=31.6
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTF 169 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~ 169 (342)
+....+..|+||||++.++|...+. .+.+|+++|.+...
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~------~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYAR------QGKKVGILDADFLG 59 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHH------TTCCEEEEECCSSC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCCCC
Confidence 4455678899999999999988776 46789999988653
No 297
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.38 E-value=0.0085 Score=61.67 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=29.5
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
..+.|+||||+|||+++..++..... .+.+.+++++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~------~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS------SGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC------CCCcEEEEechh
Confidence 47899999999999999988765432 245688888653
No 298
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=96.38 E-value=0.082 Score=42.43 Aligned_cols=135 Identities=11% Similarity=-0.028 Sum_probs=72.0
Q ss_pred ccccccCChhhHhhh-cCCCCCCcEEEEec-CCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHH
Q 019381 102 IIQITSGSRELDKIL-EGGVETGSITEIYG-EFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 179 (342)
Q Consensus 102 ~~~i~tg~~~LD~~l-~GGi~~G~l~~I~G-~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~ 179 (342)
.+.+++|.+.+|.-+ +||++.|.+++|.. .+|.|=..|+.-++..... +..++.++||........ ..+.
T Consensus 22 ~~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~----~~~~r~vlwI~Pp~~l~~----~~L~ 93 (161)
T 1oft_A 22 SNGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSE----EQDARWLTLIAPPASLTH----EWLR 93 (161)
T ss_dssp ---------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHT----CSSSSEEEEESCCTTSCH----HHHH
T ss_pred CccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcc----cccCccEEEECCCCCCCH----HHHH
Confidence 346899999999877 57899999999984 5676766555544433221 003568999988765555 4566
Q ss_pred HcCCChhhhhcceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 019381 180 RYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLA 259 (342)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la 259 (342)
..|++++ ++.+++..+..+.....+ ..++......||.. +..+ + . .-.+.|.--|
T Consensus 94 ~~Gl~~~----rll~v~~~~~~daLwa~E---qALrsG~~~aVl~W-l~~l-~--------~--------~~~RRLqlAA 148 (161)
T 1oft_A 94 RAGLNRE----RILLLQAKDNAAALALSC---EALRLGRSHTVVSW-LEPL-S--------R--------AARKQLSRAA 148 (161)
T ss_dssp HTTCCGG----GEEEECCSSTTHHHHHHH---HHHHTTCEEEEEEC-CSSC-C--------H--------HHHHHHHHHH
T ss_pred HcCCCHH----HEEEEECCChHHHHHHHH---HHHhcCCccEEEEC-CCcC-C--------h--------HHHHHHHHHH
Confidence 7899887 566777777665555544 44445667777765 3221 1 1 3356677777
Q ss_pred HHhCCEEEEE
Q 019381 260 DEFGVAVVIT 269 (342)
Q Consensus 260 ~~~~~~vi~~ 269 (342)
+..++..+++
T Consensus 149 e~g~~~~fll 158 (161)
T 1oft_A 149 QLGQAQSLNI 158 (161)
T ss_dssp HHTTCEEEEE
T ss_pred HhCCCeEEEe
Confidence 7777776664
No 299
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.37 E-value=0.043 Score=53.04 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
...++.++|.|||||||++..++...-. .+..+..|+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~------~~~d~~v~s~D 72 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW------IGVPTKVFNVG 72 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh------cCCCeEEeccc
Confidence 3468999999999999999998765422 13345566654
No 300
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.35 E-value=0.0013 Score=56.55 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=23.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
..++|.++.|.|++||||||++..++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHH
Confidence 55889999999999999999998654
No 301
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.34 E-value=0.0017 Score=52.48 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=17.9
Q ss_pred EEEEecCCCCChhHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTL 143 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~i 143 (342)
++.|+|+|||||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999977
No 302
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.31 E-value=0.0033 Score=56.65 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=30.9
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcc-cCCCCCCCCCceEEEecC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQ-LPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~-~~~~~g~~~~~vl~i~~e 166 (342)
+.-+.|+|+||+|||+|+..++.... . .+.+|+|++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~------~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEK------KGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHH------SCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHh------cCCcEEEEEHH
Confidence 57899999999999999998887665 4 35678888763
No 303
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.30 E-value=0.0021 Score=53.98 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+|.++.|.|+|||||||++..++...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999987654
No 304
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.30 E-value=0.002 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++.++.|+|+|||||||++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999988753
No 305
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.29 E-value=0.0082 Score=58.85 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=33.3
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHccc-CCCCCCCCCceEEEecCC
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQL-PLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~-~~~~g~~~~~vl~i~~e~ 167 (342)
|...+..+-....++.|+|++|+|||+|+.+++..... ... ....++|++...
T Consensus 136 L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~v~wv~~~~ 189 (591)
T 1z6t_A 136 IQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGC---FPGGVHWVSVGK 189 (591)
T ss_dssp HHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHH---CTTCEEEEEEES
T ss_pred HHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhh---CCCceEEEECCC
Confidence 44444322234679999999999999999987642210 000 123588988654
No 306
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.29 E-value=0.0025 Score=53.60 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
...+|.++.|+|++||||||++..++...
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999887643
No 307
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.29 E-value=0.0025 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+|.++.|+|++||||||++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999988754
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.29 E-value=0.0021 Score=53.84 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
..++.|+|+|||||||++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999987654
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.28 E-value=0.0023 Score=52.53 Aligned_cols=27 Identities=22% Similarity=0.084 Sum_probs=22.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+..+.++.|+|+|||||||++..++..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 345678999999999999999988754
No 310
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.26 E-value=0.0024 Score=52.61 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+..+.|+|+|||||||++..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988754
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.26 E-value=0.0022 Score=53.00 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+.++.|+|+|||||||++..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988754
No 312
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.25 E-value=0.0028 Score=61.25 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=29.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
++.|+.++|+|++||||||++..++ ...++. .+++.+...
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~--~~i~~~-----~giitied~ 296 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIM--MFIPPD-----AKVVSIEDT 296 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHG--GGSCTT-----CCEEEEESS
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHH--hhCCCC-----CCEEEEcCc
Confidence 4689999999999999999999654 444433 347766543
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.24 E-value=0.0026 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+.++.|+|+|||||||++..++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999987643
No 314
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.22 E-value=0.0071 Score=55.86 Aligned_cols=37 Identities=27% Similarity=0.183 Sum_probs=27.8
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.+..-+.|+||||+|||+++..++... +.+.++++..
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l---------~~~~~~~~~~ 106 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHL---------DIPIAISDAT 106 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHT---------TCCEEEEEGG
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHh---------CCCEEEecch
Confidence 345568999999999999999887543 2356777654
No 315
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.21 E-value=0.0027 Score=53.49 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.+|.++.|+|++||||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999987643
No 316
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.18 E-value=0.0018 Score=53.87 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+++.++.|+|+|||||||++..++..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999988754
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.17 E-value=0.0025 Score=55.73 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+++|+|+|||||||++..++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 7899999999999999998754
No 318
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.15 E-value=0.0022 Score=52.55 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=17.4
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++.++.|+|.|||||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999988654
No 319
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.14 E-value=0.0031 Score=53.79 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=30.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+....++.|.|||||||+|.|..++... +..+|++.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~-----------g~~hIstG 61 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF-----------HFNHLSSG 61 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH-----------CCEEECHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH-----------CCceEcHH
Confidence 56778899999999999999999887543 35677764
No 320
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.14 E-value=0.0028 Score=54.24 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=21.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+..++.++.|.|+|||||||++..++..
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp ----CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456678999999999999999988753
No 321
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=96.13 E-value=0.0077 Score=55.70 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=31.7
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEec
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~ 165 (342)
.++.+.|..|+||||++.++|...+. .+.+|+++|+
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~------~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLAS------QGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHH------TTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCeEEEeC
Confidence 36788999999999999999988776 5788999999
No 322
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.13 E-value=0.003 Score=53.66 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=21.9
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+|.++.|.|+|||||||++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988754
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.12 E-value=0.0033 Score=52.60 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=22.1
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
..+.++.|+|+|||||||++..++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988754
No 324
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.09 E-value=0.015 Score=60.54 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=33.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQR 173 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~r 173 (342)
...++.|.|++|+|||||+.+++........ ...+++|++.....+...
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~---Fd~gV~WVsVs~~~d~~~ 197 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCK---MDFKIFWLNLKNCNSPET 197 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHH---HSSCEEEEECCCSSSHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHh---CCCcEEEEEeCCCCCHHH
Confidence 3579999999999999999988743211100 123589999876655543
No 325
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.08 E-value=0.0072 Score=59.70 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=17.6
Q ss_pred EEEecCCCCChhHHHHHHH
Q 019381 126 TEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia 144 (342)
++|+|++|||||||+..++
T Consensus 48 iaIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp EECCCCTTSCHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHh
Confidence 9999999999999999765
No 326
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.06 E-value=0.0033 Score=56.15 Aligned_cols=28 Identities=14% Similarity=-0.013 Sum_probs=23.5
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
-.++.++.|+|++|||||||+..++...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999876543
No 327
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.05 E-value=0.0061 Score=50.07 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=21.7
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
...-.++.|+|++|||||||+..++..
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHh
Confidence 344568999999999999999988754
No 328
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.04 E-value=0.013 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHHc
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+.+.|+||||+|||||+..++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999887654
No 329
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.03 E-value=0.0032 Score=52.82 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.5
Q ss_pred EEEEecCCCCChhHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia 144 (342)
++.|+|++||||||++..++
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999876
No 330
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.03 E-value=0.0036 Score=53.80 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=24.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.+.+|.++.|.|+|||||||++..++..
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999987654
No 331
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.01 E-value=0.0039 Score=56.00 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=25.5
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
+|.++. +..|+++.|.|+||+|||||+..++
T Consensus 156 i~~L~~--~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVD--YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHH--HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHh--hccCcEEEEECCCCCCHHHHHHHHH
Confidence 555553 4558999999999999999999875
No 332
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.00 E-value=0.0057 Score=53.23 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=29.5
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
-++.|+|++||||||++..++...-.+.-. ..+..+++++++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d-~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDS 65 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhccc-ccCCceEEEecCc
Confidence 479999999999999999887643221000 0134577888764
No 333
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.98 E-value=0.0069 Score=49.47 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=27.5
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.++.|+|++||||||++..++..... .+.+|..+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~------~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR------EGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh------cCCeeeEEEeC
Confidence 37899999999999999988765432 34456666644
No 334
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.98 E-value=0.011 Score=59.52 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.|+.++++||+|||||+.+...+...... .+.+++|+....
T Consensus 45 ~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~il~i~P~r 85 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAEMGIISFLLK-----NGGKAIYVTPLR 85 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHH-----SCSEEEEECSCH
T ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----CCCeEEEEeCcH
Confidence 46789999999999999997766644331 246788887543
No 335
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.97 E-value=0.0059 Score=54.73 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
..+.++.|+|..|+||||++.++|...+. .+.+|+.||.+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI------LGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 35678888899999999999999988776 577999999874
No 336
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.94 E-value=0.0037 Score=52.33 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~ 145 (342)
++.|+|++||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998764
No 337
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.93 E-value=0.0036 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.2
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.++.|+|+|||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 338
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.93 E-value=0.0034 Score=61.15 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=31.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+++|+++.|+|+|||||||++..++.... +. .++.+.+++++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~--~~---~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM--EM---GGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH--TT---CSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc--cc---CCceEEEECCc
Confidence 366899999999999999999998765432 11 12246667764
No 339
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.92 E-value=0.0033 Score=58.94 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=22.1
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQG 154 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g 154 (342)
++.|.|+||+|||||+..++ ...++..|
T Consensus 71 ~valvG~nGaGKSTLln~L~--Gl~~p~~G 98 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR--GIGNEEEG 98 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH--TCCTTSTT
T ss_pred EEEEECCCCCcHHHHHHHHh--CCCCccCc
Confidence 99999999999999999765 44444433
No 340
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.90 E-value=0.0042 Score=59.36 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=28.0
Q ss_pred ChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 109 SRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 109 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
+..|+.+.. -+++ +++.|.||+|||||||+..++.
T Consensus 17 ~~~l~~vsl-~i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 17 WNGFFARTF-DFDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp ETTEEEEEE-ECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred cccccceEE-EEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence 344555555 6888 9999999999999999997653
No 341
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.03 Score=50.23 Aligned_cols=72 Identities=17% Similarity=0.053 Sum_probs=44.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC-CCCHHHHHHHHHHcCCChhhhhcceeEeec
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG-TFRPQRLLQIADRYGLNGADVLENVAYARA 197 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~-~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 197 (342)
...++++||||+|||+++..++..+... ......+++++.+. ......++++.+.....|..--.++.+++.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~---~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIde 90 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKF---PPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHD 90 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTS---CCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchh---hccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEecc
Confidence 3489999999999999999987643111 00234688888764 455666777776655433211124555544
No 342
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.90 E-value=0.059 Score=44.71 Aligned_cols=42 Identities=14% Similarity=0.046 Sum_probs=26.8
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+++.+|+|+|||..+...+..........+.+..++|+...
T Consensus 40 ~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 488999999999987655444444321111235578888654
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.89 E-value=0.0037 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.+.|+|+|||||||++..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999988754
No 344
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.88 E-value=0.023 Score=51.91 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.5
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcc
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQ 148 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~ 148 (342)
..+.|+|++|+|||+++..++....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999998876553
No 345
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.88 E-value=0.023 Score=57.61 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.+.-++|+|+||+|||+++..++...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 56678999999999999999887654
No 346
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=95.86 E-value=0.024 Score=39.21 Aligned_cols=52 Identities=13% Similarity=0.358 Sum_probs=45.3
Q ss_pred HhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHh
Q 019381 31 LQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAAS 82 (342)
Q Consensus 31 l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 82 (342)
+.+++|++.....|+++||.|+.|+...+..+|.++.++....+.++.+...
T Consensus 11 Ie~L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~ 62 (73)
T 1z3e_B 11 IEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLE 62 (73)
T ss_dssp GGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999877777665443
No 347
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.84 E-value=0.0053 Score=56.41 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=25.1
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
|+..|...+ +|+++.|.|+||+|||||+..++
T Consensus 205 gl~~L~~~~-----~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 205 GLKPLEEAL-----TGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp THHHHHHHH-----TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CHHHHHHhc-----CCCEEEEECCCCccHHHHHHHHh
Confidence 444444443 58899999999999999999765
No 348
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.83 E-value=0.0072 Score=53.04 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=28.6
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
|...+.|..++..-++|+||||+|||.|+..+|..
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 66667744476778999999999999999988764
No 349
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.82 E-value=0.0045 Score=51.52 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++.|.|++||||||++..++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999988754
No 350
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=95.82 E-value=0.0097 Score=41.74 Aligned_cols=59 Identities=12% Similarity=0.273 Sum_probs=47.9
Q ss_pred CCccchhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHh
Q 019381 24 GPFPVEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAAS 82 (342)
Q Consensus 24 ~~~~~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 82 (342)
.+....-+.+++|+......|+++||.|+.++...+..+|.++.++....+.++.+...
T Consensus 11 ~~~l~~~Ie~L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~ 69 (79)
T 3gfk_B 11 EKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLE 69 (79)
T ss_dssp CCGGGCBGGGSCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHhCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHH
Confidence 34433346778999999999999999999999999999999999998776666655443
No 351
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.82 E-value=0.0051 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
..++.|+|++||||||++..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988743
No 352
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.81 E-value=0.0046 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.+.++.|.|+|||||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988754
No 353
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.80 E-value=0.01 Score=55.12 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=30.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
...+.-+.|+|++|+|||+++..++..... .+..++++|.+
T Consensus 32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~------~~~~~~~~D~~ 72 (392)
T 4ag6_A 32 DRTNSNWTILAKPGAGKSFTAKMLLLREYM------QGSRVIIIDPE 72 (392)
T ss_dssp TBCCCCEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEESS
T ss_pred ccccCceEEEcCCCCCHHHHHHHHHHHHHH------CCCEEEEEeCC
Confidence 345667899999999999999988765543 24456666644
No 354
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.79 E-value=0.0097 Score=54.06 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.++.+++|+||+|||||+|+..+|..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35569999999999999999988753
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.77 E-value=0.0048 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
..++.|+|+|||||||++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988753
No 356
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.77 E-value=0.005 Score=55.27 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=25.2
Q ss_pred hHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 112 LDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 112 LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
+|.++. +..|+++.|.|+||+|||||+..++
T Consensus 160 v~~lf~--~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 160 IEELKE--YLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHHH--HHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHHHH--HhcCCeEEEECCCCCcHHHHHHHhc
Confidence 555553 5568999999999999999999654
No 357
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=95.76 E-value=0.023 Score=40.44 Aligned_cols=55 Identities=9% Similarity=0.175 Sum_probs=46.9
Q ss_pred chhHhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHh
Q 019381 28 VEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAAS 82 (342)
Q Consensus 28 ~~~l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 82 (342)
..-+.+++|+.....-|+++||.|+.++...+..+|.++.++....+.++.+...
T Consensus 11 ~~~I~~L~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~ 65 (86)
T 3k4g_A 11 LRPVDDLELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLA 65 (86)
T ss_dssp GSBGGGGCCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred hCcHHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHH
Confidence 3346677999999999999999999999999999999999999877777665443
No 358
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.76 E-value=0.012 Score=51.22 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.+.-++.+.|.+|+||||++.+++...+ . +.+|+.++.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~------g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-D------NYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-T------TSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-C------CCeEEEEeCCC
Confidence 3456899999999999999999987655 2 56799998764
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.75 E-value=0.0055 Score=53.12 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++-++.|+|+|||||||++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999988743
No 360
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=95.73 E-value=0.24 Score=48.29 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=23.4
Q ss_pred hhcCCCccchhHhhCC-CCHHHHHHHHHcCCCc
Q 019381 20 EIQHGPFPVEQLQASG-IAALDVKKLKDAGLCT 51 (342)
Q Consensus 20 ~~~~~~~~~~~l~~~g-l~~~~~~~L~~~~~~~ 51 (342)
+.+..|.+++.|.+.+ |++.+++.|.+.|+.+
T Consensus 11 ~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~ 43 (579)
T 3sqw_A 11 EDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPG 43 (579)
T ss_dssp CSSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSS
T ss_pred cCCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCC
Confidence 3455677777777655 8888888888888753
No 361
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.73 E-value=0.0055 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.|..++|+|+||+|||+++..++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 36779999999999999999887543
No 362
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.73 E-value=0.0055 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-+++.|+|.+||||||++..++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988754
No 363
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.73 E-value=0.035 Score=56.19 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=26.8
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.-++|+||||+|||+++..++... +.+.++++..
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l---------~~~~~~i~~s 522 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL---------GIELLRFDMS 522 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---------TCEEEEEEGG
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---------cCCEEEEech
Confidence 368999999999999999887654 2357778764
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.72 E-value=0.0053 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHc
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
++.|+|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887643
No 365
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.71 E-value=0.0054 Score=51.81 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.2
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.+.|+|+|||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988654
No 366
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.71 E-value=0.0055 Score=50.76 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHc
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
++.|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887643
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.70 E-value=0.0049 Score=49.92 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.1
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.++.|+|+|||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 368
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.70 E-value=0.02 Score=47.84 Aligned_cols=43 Identities=16% Similarity=0.076 Sum_probs=28.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.-+++.+++|+|||..+...+..........+.+.+++|+...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 91 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 91 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESS
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECH
Confidence 4588999999999999887766543211101124578888654
No 369
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.68 E-value=0.01 Score=51.83 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=28.7
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.-+.|+|+||+|||+++..++..... .+.+.+++++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~------~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSR------WQGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTT------TTSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCc------cCCCeEEEecCC
Confidence 45889999999999999987644321 245788898764
No 370
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.67 E-value=0.0061 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+|..+.|.|+|||||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988754
No 371
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.67 E-value=0.0018 Score=58.24 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
+.+|+++.|.|+||+|||||+..++
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhc
Confidence 5578999999999999999999754
No 372
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.66 E-value=0.012 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=20.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHHc
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.+++++|+||||||+++..++...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999998876554
No 373
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.62 E-value=0.0049 Score=56.16 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.8
Q ss_pred EEEecCCCCChhHHHHHHHHHc
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+.|+||||+|||+++..++...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999887654
No 374
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.62 E-value=0.0068 Score=51.19 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.+.|+|+|||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988653
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.62 E-value=0.0066 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.8
Q ss_pred CCcEEEEecCCCCChhHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.+-++.|+|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998763
No 376
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.61 E-value=0.0061 Score=54.39 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=25.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+-++.|+|++||||||++..++...-. .+..+.+++++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~------~~~~~~vI~~D~ 43 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRR------EGVKAVSIEGDA 43 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHH------HTCCEEEEEGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhh------cCCCeeEeecch
Confidence 458999999999999999988753211 123477888775
No 377
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.59 E-value=0.014 Score=58.90 Aligned_cols=45 Identities=29% Similarity=0.236 Sum_probs=31.4
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP 171 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~ 171 (342)
.|+-++++||+|||||+.+...+...... .+.+++|+.....+..
T Consensus 38 ~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~~l~i~P~raLa~ 82 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAEIAMVHRILT-----QGGKAVYIVPLKALAE 82 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHHHHHHHHHHH-----HCSEEEEECSSGGGHH
T ss_pred CCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCCEEEEEcCcHHHHH
Confidence 36789999999999999886555433321 2467999986654443
No 378
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.56 E-value=0.0034 Score=52.54 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=26.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHH
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia 144 (342)
..++. + .+.+|..+.|.|++|+|||||+..++
T Consensus 16 ~~l~~-~--~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 16 PDIRH-L--PSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSGGG-S--SCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCHhH-C--CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 44555 3 57899999999999999999998764
No 379
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.54 E-value=0.0072 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCChhHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
..++.|+|++||||||++..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998764
No 380
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.53 E-value=0.0048 Score=53.98 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.6
Q ss_pred EEEecCCCCChhHHHHHHHHHc
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
++|+||||+|||+++..++...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999887654
No 381
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.53 E-value=0.017 Score=54.90 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
|..++.-++|+||||+|||+++..+|...
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 55566668999999999999999887664
No 382
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.52 E-value=0.0081 Score=51.66 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=22.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
...+|.++.|+|++||||||++..++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999998764
No 383
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.51 E-value=0.007 Score=52.16 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.-++.|.|+|||||||++..++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999987643
No 384
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.50 E-value=0.013 Score=53.75 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=29.0
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
+.+.++.|+|+||+|||||+..++..... .++++..+..+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~------~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE------RGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh------cCCeEEEEeec
Confidence 45779999999999999999988653322 23456666554
No 385
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.49 E-value=0.047 Score=44.55 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-++++|.+|+|||+|+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999998754
No 386
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.49 E-value=0.0075 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.4
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.+.|+|.|||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988753
No 387
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.48 E-value=0.012 Score=51.36 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=31.9
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
++.|.|..|+||||++.++|...+. .+.+|+++|.+..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~------~G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHA------MGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHT------TTCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHH------CCCcEEEEcCCCC
Confidence 5666899999999999999988775 4779999998743
No 388
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.46 E-value=0.012 Score=53.02 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=36.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.+..-.+++|+|.-|.||||.+.++|+..+. .|.+|+.+|.+-
T Consensus 44 ~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~------~GkkVllID~Dp 86 (314)
T 3fwy_A 44 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSI------LGKRVLQIGCDP 86 (314)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEESS
T ss_pred CCCCceEEEEECCCccCHHHHHHHHHHHHHH------CCCeEEEEecCC
Confidence 3555779999999999999999999988887 688999999883
No 389
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.45 E-value=0.017 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCChhHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
+.+++|+||+|||||+|+..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 45899999999999999998874
No 390
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.45 E-value=0.0081 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.++|+||||+||||++..+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999987654
No 391
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.41 E-value=0.018 Score=52.88 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=40.5
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcc--cCCCCCCCCCceEEEecCCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQ--LPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~--~~~~~g~~~~~vl~i~~e~~ 168 (342)
+.|+.++.. +.-.++...|..|+||||++.++|...+ . .|.+|+.+|++..
T Consensus 7 ~~l~~l~~~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~------~G~rVLLvD~D~~ 59 (354)
T 2woj_A 7 PNLHSLITS--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQ------PNKQFLLISTDPA 59 (354)
T ss_dssp SSCHHHHTC--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHC------TTSCEEEEECCSS
T ss_pred ccHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc------CCCeEEEEECCCC
Confidence 446667652 2346888889999999999999998887 6 5789999999854
No 392
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.31 E-value=0.0043 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHc
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
++.|.|++||||||++..++...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887644
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.31 E-value=0.01 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.+..+.|.|+|||||||++..++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988754
No 394
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.30 E-value=0.018 Score=50.76 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=33.4
Q ss_pred CCcEEEEecC-CCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 122 TGSITEIYGE-FRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 122 ~G~l~~I~G~-~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
+..++.|++. +|+||||++.++|...+. .+.+|++||.+..
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~------~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQ------AGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHh------CCCeEEEEeCCCC
Confidence 3457777764 899999999999988876 5789999999854
No 395
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.30 E-value=0.021 Score=52.26 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=40.3
Q ss_pred hhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcc--cCCCCCCCCCceEEEecCC
Q 019381 110 RELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQ--LPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 110 ~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~--~~~~~g~~~~~vl~i~~e~ 167 (342)
+.|+.++.. +.-.++.+.|..|+||||++.++|...+ . .+.+|+.+|++.
T Consensus 7 ~~L~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~------~g~~vllid~D~ 58 (348)
T 3io3_A 7 PTLESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQ------PNEQFLLISTDP 58 (348)
T ss_dssp SSSHHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHC------TTSCEEEEECCS
T ss_pred hhHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc------CCCeEEEEECCC
Confidence 356667762 2347999999999999999999998877 5 578999999984
No 396
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.30 E-value=0.0097 Score=57.96 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+|..++|+||||+|||+++..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999887543
No 397
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.29 E-value=0.009 Score=50.92 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
++.|.|+|||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988754
No 398
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.25 E-value=0.005 Score=50.45 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=20.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHHc
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+++.|+|++|||||||+..++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999876543
No 399
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.24 E-value=0.014 Score=51.64 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=32.1
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
++.|.|..|+||||++.++|...+. .+.+|+.+|.+..
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~------~G~rVlliD~D~q 41 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAE------MGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH------TTCCEEEEEECSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHH------CCCeEEEEecCCC
Confidence 5667899999999999999988776 4678999998743
No 400
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.24 E-value=0.01 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-.++.|+|.+||||||++..++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999988753
No 401
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.24 E-value=0.018 Score=48.81 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=22.9
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
-+|.++.|.|++||||||++..++...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999876544
No 402
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.19 E-value=0.0097 Score=52.51 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.4
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.+.|.|++|+|||||+..++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999997764
No 403
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.08 E-value=0.012 Score=59.22 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=30.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
|.-++++||+|||||+.+...+..... .+.+++|+....
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~------~~~~~l~i~P~r 78 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAI------KGGKSLYVVPLR 78 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHH------TTCCEEEEESSH
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHH------hCCcEEEEeCcH
Confidence 678999999999999998766655443 246799997653
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.08 E-value=0.012 Score=49.17 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.4
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~ 145 (342)
++.|+|++||||||++..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998765
No 405
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.08 E-value=0.011 Score=49.84 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.+.|.|+|||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 406
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.08 E-value=0.011 Score=52.66 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=20.0
Q ss_pred cEEEEecCCCCChhHHHHHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.++.|+|+|||||||++..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998875
No 407
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.00 E-value=0.46 Score=38.39 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-++|.|++|+|||+|+..+...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999987643
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.00 E-value=0.014 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.++.|+|++|||||||+..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 38999999999999999988754
No 409
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.98 E-value=0.13 Score=48.31 Aligned_cols=39 Identities=13% Similarity=0.034 Sum_probs=26.8
Q ss_pred CCcEEEEecCCCCChhHHHHHHHH-HcccCCCCCCCCCceEEEecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCV-TCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~-~~~~~~~~g~~~~~vl~i~~e 166 (342)
+|+.++++|++|||||..+..-++ .... .+..++|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~------~g~~~lvl~Pt 40 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK------KRLRTVILAPT 40 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH------TTCCEEEEESS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh------CCCCEEEECcH
Confidence 377899999999999998633223 3322 34578888754
No 410
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.98 E-value=0.022 Score=56.01 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=35.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
...++.+.|.+|+||||++.++|...+. .|.+|+++|++.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~------~G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAE------QGKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHH------CCCcEEEEECCC
Confidence 3568999999999999999999988876 578999999985
No 411
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.97 E-value=0.012 Score=55.41 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
...+++|+|+|||||||++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998753
No 412
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.96 E-value=0.013 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=20.0
Q ss_pred CcEEEEecCCCCChhHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia 144 (342)
.-++.|+|++||||||++..++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999887
No 413
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.94 E-value=0.016 Score=46.08 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.1
Q ss_pred cEEEEecCCCCChhHHHHHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.+++|+||+|+|||+++..+..
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999886653
No 414
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.91 E-value=0.021 Score=51.26 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=29.6
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+.-+.|+|+||+|||+++..++..... .+.+.+++++..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~------~~~~~v~v~~~~ 63 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSAR------SDRPLVTLNCAA 63 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSC------SSSCCCEEECSS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcc------cCCCeEEEeCCC
Confidence 456889999999999999987654322 345688888764
No 415
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.90 E-value=0.022 Score=52.32 Aligned_cols=26 Identities=35% Similarity=0.243 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
++.-++|+||||+|||+++..++...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568999999999999999887654
No 416
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.89 E-value=0.03 Score=47.92 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=31.5
Q ss_pred CcEEEEe-cCCCCChhHHHHHHHHHcccCCCCCCC-CCceEEEecCCC
Q 019381 123 GSITEIY-GEFRSGKTQLCHTLCVTCQLPLDQGGG-EGKAMYIDAEGT 168 (342)
Q Consensus 123 G~l~~I~-G~~GsGKTtl~~~ia~~~~~~~~~g~~-~~~vl~i~~e~~ 168 (342)
+.++.|+ +..|+||||++.++|...+. . +.+|+++|.+..
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~------~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQ------EPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTT------STTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHh------CcCCCEEEEECCCC
Confidence 4455555 66899999999999988776 4 789999998743
No 417
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.86 E-value=0.021 Score=56.06 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=40.9
Q ss_pred hhhHhhhcC-CCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 110 RELDKILEG-GVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 110 ~~LD~~l~G-Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+.||.++++ +-....++.+.|.+|+||||++.++|...+. .+.+|+++|++.
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~------~g~~vllvD~Dp 365 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLAD------MGFDVHLTTSDP 365 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEESCC
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHH------CCCcEEEEeCCC
Confidence 567777763 2334567888999999999999999988776 477899999884
No 418
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.80 E-value=0.02 Score=49.37 Aligned_cols=33 Identities=15% Similarity=0.014 Sum_probs=25.3
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-.+|+|++|+|||.++..++... +.+++|+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEeCC
Confidence 38899999999999998766543 3468888654
No 419
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.79 E-value=0.023 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.9
Q ss_pred EEEecCCCCChhHHHHHHHHHc
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+.|+||||+|||+++..++...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999887654
No 420
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.76 E-value=0.015 Score=49.80 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=20.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
-..+|.++.|.|++||||||++..++...
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999886544
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.76 E-value=0.015 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.++.|+|++||||||++..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988754
No 422
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.75 E-value=0.017 Score=54.38 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
+.+|+++.|.||+|+|||+++..++.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 55689999999999999999997654
No 423
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.73 E-value=0.42 Score=45.36 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.7
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHc
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
..++.++|.|||||||++..++...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999987654
No 424
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.72 E-value=0.017 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCcEEEEecCCCCChhHHHHHHHH
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
+|.-++|.|+||+|||||+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999998763
No 425
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.70 E-value=0.075 Score=44.04 Aligned_cols=39 Identities=13% Similarity=-0.126 Sum_probs=24.5
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+.+.+|+|+|||......+....... ..+.+++|+...
T Consensus 42 ~~lv~apTGsGKT~~~~~~~~~~~~~~---~~~~~~lil~Pt 80 (206)
T 1vec_A 42 DILARAKNGTGKSGAYLIPLLERLDLK---KDNIQAMVIVPT 80 (206)
T ss_dssp CEEEECCSSSTTHHHHHHHHHHHCCTT---SCSCCEEEECSC
T ss_pred CEEEECCCCCchHHHHHHHHHHHhccc---CCCeeEEEEeCc
Confidence 478999999999976554443333211 123468888654
No 426
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.70 E-value=0.018 Score=47.04 Aligned_cols=24 Identities=29% Similarity=0.201 Sum_probs=21.1
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
|.-++|.|+||+||||++..++..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 567999999999999999988754
No 427
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.69 E-value=0.0022 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=21.8
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQ 153 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~ 153 (342)
+++.|.||+|||||||+..++ .++++..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~--g~~~~~~ 55 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFV--TALIPDL 55 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHH--HHHSCCT
T ss_pred cEEEEECCCCCCHHHHHHHHh--cccccCC
Confidence 578899999999999999665 4444443
No 428
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.69 E-value=0.27 Score=39.95 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-++|.|++|+|||+|+..++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988654
No 429
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.67 E-value=0.046 Score=60.19 Aligned_cols=137 Identities=13% Similarity=0.140 Sum_probs=74.6
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh--------------
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA-------------- 186 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------------- 186 (342)
..++-+++++|+|||||..+...+....... .+++++|+.....+..+..+.+.+.++....
T Consensus 940 ~~~~nvlv~APTGSGKTliaelail~~l~~~----~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~ 1015 (1724)
T 4f92_B 940 NSDDNVFVGAPTGSGKTICAEFAILRMLLQS----SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL 1015 (1724)
T ss_dssp SCCSCEEEECCTTSCCHHHHHHHHHHHHHHC----TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH
T ss_pred cCCCcEEEEeCCCCCchHHHHHHHHHHHHhC----CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch
Confidence 3577899999999999998765544443321 2457999987665555555555555532100
Q ss_pred hhhc--ceeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHh--
Q 019381 187 DVLE--NVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF-- 262 (342)
Q Consensus 187 ~~~~--~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~-- 262 (342)
.... ++.+ .+.+.+..++......-.-.++++||+|++..+-. + |-..+..++..++.++...
T Consensus 1016 ~~~~~~~IiV---~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~---------rg~~le~il~rl~~i~~~~~~ 1082 (1724)
T 4f92_B 1016 KLLGKGNIII---STPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-E---------NGPVLEVICSRMRYISSQIER 1082 (1724)
T ss_dssp HHHHHCSEEE---ECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-T---------THHHHHHHHHHHHHHHHTTSS
T ss_pred hhcCCCCEEE---ECHHHHHHHHhCcccccccceeeEEEeechhhcCC-C---------CCccHHHHHHHHHHHHhhcCC
Confidence 0011 1222 12222222221110000114689999999986632 1 1122446667777776543
Q ss_pred CCEEEEEecccc
Q 019381 263 GVAVVITNQVVA 274 (342)
Q Consensus 263 ~~~vi~~~h~~~ 274 (342)
++-+|..+-+-.
T Consensus 1083 ~~riI~lSATl~ 1094 (1724)
T 4f92_B 1083 PIRIVALSSSLS 1094 (1724)
T ss_dssp CCEEEEEESCBT
T ss_pred CceEEEEeCCCC
Confidence 566777665543
No 430
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.67 E-value=0.015 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
=.+++|+|++|||||||+..++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHh
Confidence 35899999999999999998764
No 431
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.046 Score=57.73 Aligned_cols=101 Identities=13% Similarity=0.198 Sum_probs=56.2
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh------hhh--cc
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA------DVL--EN 191 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~------~~~--~~ 191 (342)
+..|.-++++|++|||||..+...+..... .+..++|+.....+.....+.+.+.++ ... .+- .+
T Consensus 196 i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------~g~rvlvl~PtraLa~Q~~~~l~~~~~-~VglltGd~~~~~~~~ 268 (1108)
T 3l9o_A 196 IDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTGDITINPDAG 268 (1108)
T ss_dssp HTTTCCEEEECCSSSHHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHHHHTS-SEEEECSSCBCCCSCS
T ss_pred HHcCCCEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEcCcHHHHHHHHHHHHHHhC-CccEEeCccccCCCCC
Confidence 345778999999999999987765555443 356899998765444444444444343 100 000 11
Q ss_pred eeEeecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc
Q 019381 192 VAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 192 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~ 232 (342)
+.+. +...+...+..- ...-.++++||||+...+..
T Consensus 269 IlV~---Tpe~L~~~L~~~--~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 269 CLVM---TTEILRSMLYRG--SEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp EEEE---EHHHHHHHHHHC--SSHHHHEEEEEEETGGGTTS
T ss_pred EEEe---ChHHHHHHHHcC--ccccccCCEEEEhhhhhccc
Confidence 2222 223232222210 00113589999999987743
No 432
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.65 E-value=0.026 Score=56.13 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=31.2
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
....+++|.||||+|||+.+..++..... .+.+|+..+..+
T Consensus 203 ~~~~~~lI~GPPGTGKT~ti~~~I~~l~~------~~~~ILv~a~TN 243 (646)
T 4b3f_X 203 SQKELAIIHGPPGTGKTTTVVEIILQAVK------QGLKVLCCAPSN 243 (646)
T ss_dssp HCSSEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEEESSH
T ss_pred cCCCceEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEcCch
Confidence 34569999999999999998888776655 355677766553
No 433
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.65 E-value=0.018 Score=52.95 Aligned_cols=36 Identities=33% Similarity=0.422 Sum_probs=27.3
Q ss_pred CChhhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 108 GSRELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 108 g~~~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
++..++.+-- -+.+| ++.|+|++|+|||+++..+..
T Consensus 13 ~~~~~~~~~~-~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 13 NYRNLAPGTL-NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SBTTCCSEEE-ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CccceeeeEE-EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3444444433 57788 999999999999999997764
No 434
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.63 E-value=0.029 Score=47.85 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=29.9
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
+....+..|+||||++.++|...+. .+.+|+++|.+.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~------~g~~VlliD~D~ 41 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGD------RGRKVLAVDGDL 41 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh------cCCeEEEEeCCC
Confidence 3344567899999999999987776 467899999875
No 435
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.62 E-value=0.025 Score=50.19 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=32.8
Q ss_pred CcEEEEec---CCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 123 GSITEIYG---EFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 123 G~l~~I~G---~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
+.++.|++ ..|+||||++.++|...+. .+.+|+.||.+..
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~------~G~rVlliD~D~q 76 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDK------LNLKVLMIDKDLQ 76 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH------TTCCEEEEEECTT
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHh------CCCeEEEEeCCCC
Confidence 55677775 8999999999999987765 4678999998854
No 436
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.61 E-value=0.036 Score=50.21 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=34.6
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
-.++.+.|..|+||||++..+|...+. .|.+|+++|++..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~------~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSK------VRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHT------SSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCeEEEEECCCC
Confidence 458888999999999999999988876 5789999999854
No 437
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=94.60 E-value=0.16 Score=40.28 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=42.2
Q ss_pred cCceEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCCCcccCCCCccccCccccc
Q 019381 217 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMA 296 (342)
Q Consensus 217 ~~~~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~~~~~~~~~~~~~~~p~~g~~~~ 296 (342)
.+++++++|+++..++. ..+ ..+...|+.+.++ +.+||+++|... . .
T Consensus 80 ~~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~-~~tiiivsH~~~-~-------------------~ 126 (148)
T 1f2t_B 80 GEISLLILDEPTPYLDE--------ERR----RKLITIMERYLKK-IPQVILVSHDEE-L-------------------K 126 (148)
T ss_dssp SSCSEEEEESCSCTTCH--------HHH----HHHHHHHHHTGGG-SSEEEEEESCGG-G-------------------G
T ss_pred CCCCEEEEECCCccCCH--------HHH----HHHHHHHHHHHcc-CCEEEEEEChHH-H-------------------H
Confidence 67999999999997753 222 2566667766554 789999998752 1 2
Q ss_pred cccceEEEEEeecC
Q 019381 297 HASTTRLALRKGRG 310 (342)
Q Consensus 297 ~~~d~~l~l~~~~~ 310 (342)
..+|.++.+.+.+|
T Consensus 127 ~~~d~ii~l~~~~g 140 (148)
T 1f2t_B 127 DAADHVIRISLENG 140 (148)
T ss_dssp GGCSEEEEEEEETT
T ss_pred HhCCEEEEEEcCCC
Confidence 35677788876444
No 438
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=94.60 E-value=0.53 Score=40.05 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=25.4
Q ss_pred EEEecC-CCCChhHHHHHHHHHcccCCCCCCCCCceEEEe
Q 019381 126 TEIYGE-FRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
Q Consensus 126 ~~I~G~-~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~ 164 (342)
+.|+|. +|+|||+++..++..... .+.+|.|+-
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~------~G~~V~~~K 40 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEH------QNIKSLCLK 40 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHH------TTCCEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH------CCCeeEEec
Confidence 445554 999999999988876665 467888885
No 439
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.59 E-value=0.03 Score=48.24 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=23.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.--+|.++.|.|++||||||++..++...
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468899999999999999999886544
No 440
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.58 E-value=0.091 Score=49.73 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=32.4
Q ss_pred CCcEEEEecCCCCChhH-HHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 122 TGSITEIYGEFRSGKTQ-LCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTt-l~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
.++++++.|++|||||. ++..++..... .+..++|+.... .-..++.+.+
T Consensus 18 ~~~~~lv~a~TGsGKT~~~~~~~l~~~~~------~~~~~lvl~Ptr----~La~Q~~~~l 68 (451)
T 2jlq_A 18 KKRLTIMDLHPGAGKTKRILPSIVREALL------RRLRTLILAPTR----VVAAEMEEAL 68 (451)
T ss_dssp TTCEEEECCCTTSSCCTTHHHHHHHHHHH------TTCCEEEEESSH----HHHHHHHHHT
T ss_pred cCCeEEEECCCCCCHhhHHHHHHHHHHHh------cCCcEEEECCCH----HHHHHHHHHh
Confidence 36788999999999999 46655443332 245788887542 2233455554
No 441
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.57 E-value=0.018 Score=47.47 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.+.|.|++|+|||||+..++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999998764
No 442
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.55 E-value=0.02 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.1
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
..+++|+||+|||||+|+..++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 458999999999999999998754
No 443
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.55 E-value=0.024 Score=55.97 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 119 GVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 119 Gi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
-+..|+.+.|.||||+||||++..++.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 456678999999999999999998764
No 444
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.53 E-value=0.027 Score=52.01 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=32.5
Q ss_pred CCCcEEEEe-cCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 121 ETGSITEIY-GEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 121 ~~G~l~~I~-G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.++.++.|+ |..|+||||++.++|...+. .+.+|+++|.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~------~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHAN------MGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHH------HTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHh------CCCCEEEEECC
Confidence 345666666 59999999999999987776 46789999987
No 445
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.53 E-value=0.24 Score=46.93 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=28.6
Q ss_pred CCCCcEEEEecCCCCChhHH-HHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 120 VETGSITEIYGEFRSGKTQL-CHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl-~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
+..|..+++++++|||||+. +..++..... .+..++|+...
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~------~~~~~lvl~Pt 59 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ------QRLRTAVLAPT 59 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHH------TTCCEEEEECS
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEECch
Confidence 45588999999999999996 4444333322 24578888754
No 446
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.49 E-value=0.035 Score=46.69 Aligned_cols=37 Identities=24% Similarity=0.165 Sum_probs=30.3
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
+....+..|+||||++.++|...+. .+ +|+.+|.+..
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~------~g-~VlliD~D~q 39 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLAL------QG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHT------TS-CEEEEEECTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHh------cC-CEEEEECCCC
Confidence 3445688999999999999987775 46 8999998864
No 447
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.48 E-value=0.028 Score=51.40 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCCcE--EEEecCCCCChhHHHHHHHHHc
Q 019381 120 VETGSI--TEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 120 i~~G~l--~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+.+|+. +.|.|+||+||||++..++...
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455666 9999999999999999877543
No 448
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.46 E-value=0.019 Score=47.56 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-++|.|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999987643
No 449
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.40 E-value=0.034 Score=48.05 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=30.4
Q ss_pred EEEE-ecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 125 ITEI-YGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 125 l~~I-~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
++.| .+..|+||||++.++|...+. .+.+|+++|...
T Consensus 4 vi~v~s~kgGvGKTt~a~~LA~~la~------~g~~VlliD~D~ 41 (260)
T 3q9l_A 4 IIVVTSGKGGVGKTTSSAAIATGLAQ------KGKKTVVIDFAI 41 (260)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCC
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHh------CCCcEEEEECCC
Confidence 4444 677899999999999988776 477999999885
No 450
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.38 E-value=0.026 Score=49.07 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=32.4
Q ss_pred CcEEEEe-cCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 123 GSITEIY-GEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 123 G~l~~I~-G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
+.++.|+ +..|+||||++.++|...+. .+.+|++||.+..
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~ 46 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLAR------LGKRVLLVDLDPQ 46 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHH------TTCCEEEEECCTT
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHH------CCCCEEEEECCCC
Confidence 4566665 67899999999999988776 4679999998853
No 451
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.38 E-value=0.022 Score=48.97 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+|.++.|.|.+||||||++..++...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999887653
No 452
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.32 E-value=0.061 Score=53.65 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=23.9
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+.++..+.|.|++|+|||||+..++..
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 567889999999999999999988744
No 453
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=94.24 E-value=0.032 Score=40.76 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=45.1
Q ss_pred HhhCCCCHHHHHHHHHcCCCchHHhhcCChHHHHHHhCCCHHHHHHHHHHHh
Q 019381 31 LQASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAAS 82 (342)
Q Consensus 31 l~~~gl~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 82 (342)
+.+++|+.....-|+++||.|+.++...+..+|.++.++....+.++.....
T Consensus 26 Ie~L~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~ 77 (98)
T 1coo_A 26 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 77 (98)
T ss_dssp GGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHH
Confidence 6667899999999999999999999999999999999998877776655443
No 454
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.16 E-value=0.053 Score=45.56 Aligned_cols=37 Identities=24% Similarity=0.113 Sum_probs=27.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
.+.|+|.+|+|||||+..++..... ..++..++.+..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~-------~~~~~~i~~d~~ 68 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGN-------EVKIGAMLGDVV 68 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTT-------TSCEEEEECSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc-------CCeEEEEecCCC
Confidence 6899999999999999998765422 235667776643
No 455
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.15 E-value=0.031 Score=47.48 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.+|.++.|.|++||||||.+..++...
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876544
No 456
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.14 E-value=0.026 Score=45.23 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.7
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.++|.|++|+|||+|+..++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999998763
No 457
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.13 E-value=0.05 Score=48.26 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=31.9
Q ss_pred CcEEEEe-cCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 123 GSITEIY-GEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 123 G~l~~I~-G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
+.++.|+ +.+|.||||++.++|...+. .+.+|++||.+..
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~------~G~rVLLID~D~~ 132 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQ------TNKRVLLIDCDMR 132 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHT------TTCCEEEEECCTT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHh------CCCCEEEEeccCC
Confidence 3455555 46899999999999988876 5789999999854
No 458
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.13 E-value=0.044 Score=46.39 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=22.5
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+|.++.|.|++||||||.+..++...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876544
No 459
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.11 E-value=0.036 Score=52.63 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=27.1
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCC-ceEEEecC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEG-KAMYIDAE 166 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~-~vl~i~~e 166 (342)
.+.|.|+||+|||+++..++..... .+. .++.+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~------~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIS------TGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH------TTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh------cCCceEEEecCc
Confidence 9999999999999999988766544 222 46666544
No 460
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.11 E-value=0.12 Score=54.93 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=34.4
Q ss_pred hhHhhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 111 ELDKILEGGVETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 111 ~LD~~l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
.|...|..+=....++.|+|+.|+||||||.+++...... .+.....++|++....
T Consensus 135 ~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~--~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 135 AIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLL--EGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp HHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHH--TTTSTTCEEEEECCSC
T ss_pred HHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHH--HhhCCCeEEEEEECCc
Confidence 3444443222345689999999999999998876432100 0002346889987654
No 461
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.09 E-value=0.049 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.152 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
|.-+.|+|+||+|||+++..++..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999988754
No 462
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.06 E-value=0.033 Score=51.74 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=26.4
Q ss_pred hcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 019381 116 LEGGVETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 116 l~GGi~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
+.|-+..|..+.|.|+||+|||||...++.
T Consensus 13 ~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 13 QWGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CCSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 334788999999999999999999998875
No 463
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.98 E-value=0.023 Score=46.41 Aligned_cols=20 Identities=40% Similarity=0.386 Sum_probs=17.8
Q ss_pred EEEEecCCCCChhHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLC 144 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia 144 (342)
-++|.|++|+|||+|+..++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999875
No 464
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.92 E-value=0.079 Score=45.38 Aligned_cols=41 Identities=15% Similarity=-0.068 Sum_probs=25.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
-+.+.+|+|+|||......+....... ...+..++|+....
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~~~~lil~Pt~ 108 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQLKQP--ANKGFRALIISPTR 108 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHCSC--CSSSCCEEEECSSH
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHhhc--ccCCceEEEEeCCH
Confidence 378999999999976544333333211 11244688886553
No 465
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.87 E-value=0.035 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.0
Q ss_pred cEEEEecCCCCChhHHHHHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.+++|+|++|+|||+++..+..
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 4999999999999999886543
No 466
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.86 E-value=0.018 Score=50.33 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHH
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.++.++.|.|.+||||||++..++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4677999999999999999997654
No 467
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.83 E-value=0.023 Score=51.48 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.6
Q ss_pred EEEecCCCCChhHHHHHHHHHc
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
++|+|+||+|||+++..++...
T Consensus 48 vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 9999999999999999887643
No 468
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.81 E-value=0.037 Score=47.22 Aligned_cols=27 Identities=26% Similarity=0.142 Sum_probs=23.1
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 121 ETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 121 ~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
.+|.++.|.|.+||||||++..++...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999876543
No 469
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=93.81 E-value=0.74 Score=39.59 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=27.1
Q ss_pred ccCChhhHhhhcCCCCCCcEEEEec-CCCCChhHHHHHHHHHcccCCCCCCCCCceEEEe
Q 019381 106 TSGSRELDKILEGGVETGSITEIYG-EFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
Q Consensus 106 ~tg~~~LD~~l~GGi~~G~l~~I~G-~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~ 164 (342)
++|...|..+. ..+.|+| .+|+|||+++..++..... .+.+|.||-
T Consensus 11 ~~~~~~~~~m~-------k~i~ItgT~t~vGKT~vs~gL~~~L~~------~G~~V~~fK 57 (242)
T 3qxc_A 11 SSGRENLYFQG-------HMLFISATNTNAGKTTCARLLAQYCNA------CGVKTILLK 57 (242)
T ss_dssp --------CCC-------EEEEEEESSTTSSHHHHHHHHHHHHHH------TTCCEEEEC
T ss_pred cchhhHHhhcC-------cEEEEEeCCCCCcHHHHHHHHHHHHHh------CCCceEEEe
Confidence 45555555443 2344555 5999999999988776655 467888885
No 470
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.81 E-value=0.048 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.9
Q ss_pred EEEecCCCCChhHHHHHHHHHc
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+.|+||||+|||+++..++...
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999887654
No 471
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.78 E-value=0.056 Score=52.93 Aligned_cols=39 Identities=8% Similarity=-0.019 Sum_probs=30.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.+.++.|.|+||+|||+++..++..... .+.+|++....
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~------~g~~Vl~~ApT 241 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAES------LGLEVGLCAPT 241 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEEESS
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEecCc
Confidence 3679999999999999999988765443 35678777654
No 472
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.76 E-value=0.033 Score=46.96 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHH
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~ 145 (342)
+.++.|+|++||||||++..++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998764
No 473
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.75 E-value=0.15 Score=42.81 Aligned_cols=39 Identities=15% Similarity=-0.010 Sum_probs=25.4
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+.+.+++|+|||......+....... ..+..++|+...
T Consensus 43 ~~lv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~Pt 81 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAYLLPIMEKIKPE---RAEVQAVITAPT 81 (219)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHHCCTT---SCSCCEEEECSS
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHhC---cCCceEEEEcCc
Confidence 468899999999987554444443321 124568888754
No 474
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.71 E-value=0.034 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
.++.|+||+|+|||+|+..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 47899999999999999998764
No 475
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.70 E-value=0.035 Score=44.05 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-++|.|++|+|||+|+..++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3789999999999999988653
No 476
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.64 E-value=0.054 Score=47.17 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=30.8
Q ss_pred CcEEEE-ecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCC
Q 019381 123 GSITEI-YGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGT 168 (342)
Q Consensus 123 G~l~~I-~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~ 168 (342)
+.++.| .+..|+||||++.++|...+ . +.+|+++|.+..
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~------g~~VlliD~D~~ 66 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-K------NNKVLLIDMDTQ 66 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-T------TSCEEEEEECTT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-C------CCCEEEEECCCC
Confidence 445555 67889999999999988766 2 578999999854
No 477
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.58 E-value=0.24 Score=52.55 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=33.8
Q ss_pred hhHhhhcCCCCCCc--EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 111 ELDKILEGGVETGS--ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 111 ~LD~~l~GGi~~G~--l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.++.++. .+..|. -++++|+.|+|||..+...+..... .+..++++....
T Consensus 611 ai~~il~-~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------~g~~vlvlvPt~ 662 (1151)
T 2eyq_A 611 AINAVLS-DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVLVPTT 662 (1151)
T ss_dssp HHHHHHH-HHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEECSSH
T ss_pred HHHHHHH-HHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------hCCeEEEEechH
Confidence 4555655 344444 7899999999999887755544433 355788887543
No 478
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.58 E-value=0.11 Score=44.42 Aligned_cols=39 Identities=13% Similarity=-0.079 Sum_probs=25.1
Q ss_pred EEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
-+++.+++|+|||......+....... ..+..++|+...
T Consensus 69 ~~li~apTGsGKT~~~~l~~l~~l~~~---~~~~~~lil~Pt 107 (237)
T 3bor_A 69 DVIAQAQSGTGKTATFAISILQQLEIE---FKETQALVLAPT 107 (237)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHCCTT---SCSCCEEEECSS
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhc---CCCceEEEEECc
Confidence 378899999999977554444433211 124578888654
No 479
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.54 E-value=0.038 Score=43.51 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=18.0
Q ss_pred EEEecCCCCChhHHHHHHHH
Q 019381 126 TEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~ 145 (342)
+++.|++|+|||+|+..++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999998763
No 480
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.54 E-value=0.04 Score=54.27 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
+|.++.|+|.|||||||++..++...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887653
No 481
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.54 E-value=0.22 Score=41.64 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=25.6
Q ss_pred EEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
+++.+++|+|||..+...+....... ..+.+++|+...
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~~~~~---~~~~~~lil~Pt 91 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQLEPV---TGQVSVLVMCHT 91 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCC---TTCCCEEEECSC
T ss_pred EEEECCCCCchhhhhhHHHHHhhhcc---CCCEEEEEEeCC
Confidence 78899999999987766555444321 123468888654
No 482
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.51 E-value=0.063 Score=50.66 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHc
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
++++. ++++||||+|||+++..+|...
T Consensus 48 ~~~~~-iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 48 VTPKN-ILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCce-EEEEcCCCCCHHHHHHHHHHHc
Confidence 33443 8899999999999999887654
No 483
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.50 E-value=0.052 Score=51.07 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=20.7
Q ss_pred cEEEEecCCCCChhHHHHHHHHHccc
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQL 149 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~ 149 (342)
.-+.|+|++|+|||+++..++.....
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~ 79 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLL 79 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999998776665543
No 484
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.49 E-value=0.055 Score=47.83 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=30.5
Q ss_pred EEEE-ecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 125 ITEI-YGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 125 l~~I-~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
++.| .+..|+||||++.++|...+. .+.+|+.+|.+.
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLY------GGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHH------TTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHH------CCCcEEEEECCC
Confidence 4444 578899999999999988776 477899999986
No 485
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.48 E-value=0.12 Score=53.93 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=53.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCCCCCHHHHHHHHHHcCCChh------hhh--cceeE
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGA------DVL--ENVAY 194 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~------~~~--~~i~~ 194 (342)
|.-+++++|+|+|||..+...+..... .+.+++|+.....+.....+.+.+.++ ... ... ..+.+
T Consensus 101 g~~vLV~apTGSGKTlva~lai~~~l~------~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vglltGd~~~~~~~~IvV 173 (1010)
T 2xgj_A 101 GESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTGDITINPDAGCLV 173 (1010)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHHHHHS-CEEEECSSCEECTTCSEEE
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHhc------cCCeEEEECChHHHHHHHHHHHHHHhC-CEEEEeCCCccCCCCCEEE
Confidence 567999999999999987544433332 356899998764444444444444333 100 000 11222
Q ss_pred eecCCHHHHHHHHHHHHHHhHhcCceEEEEeccccccc
Q 019381 195 ARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYR 232 (342)
Q Consensus 195 ~~~~~~~~~~~~l~~l~~~~~~~~~~lvviD~l~~l~~ 232 (342)
. +.+.+...+.. ....-.++++||||+...+..
T Consensus 174 ~---Tpe~L~~~L~~--~~~~l~~l~lVViDEaH~l~d 206 (1010)
T 2xgj_A 174 M---TTEILRSMLYR--GSEVMREVAWVIFDEVHYMRD 206 (1010)
T ss_dssp E---EHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGC
T ss_pred E---cHHHHHHHHHc--CcchhhcCCEEEEechhhhcc
Confidence 2 12222222211 001124689999999998754
No 486
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.48 E-value=0.04 Score=43.54 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=18.9
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-++|.|++|+|||+|+..++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999987643
No 487
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.48 E-value=0.044 Score=53.32 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.8
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.+.++.|+|.+||||||++..++..... .+..+.+++.+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~------~G~~~~~ld~D 409 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA------RGRKVTLLDGD 409 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh------cCCeEEEECch
Confidence 3789999999999999999988764332 24567777754
No 488
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.48 E-value=0.039 Score=53.98 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHcccCCCCCCCC-CceEEEecC
Q 019381 122 TGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGE-GKAMYIDAE 166 (342)
Q Consensus 122 ~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~-~~vl~i~~e 166 (342)
.|.++.|+|.|||||||++..++..... .+ .++.+++++
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~------~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ------QGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH------HCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc------cCCceEEEECcH
Confidence 4679999999999999999988765332 12 457788754
No 489
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.47 E-value=0.039 Score=44.88 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~ 145 (342)
.+.|.|++|+|||+|+..++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999998864
No 490
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.44 E-value=0.04 Score=43.41 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=18.7
Q ss_pred EEEecCCCCChhHHHHHHHHH
Q 019381 126 TEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~ 146 (342)
+++.|++|+|||+|+..++..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988654
No 491
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=93.41 E-value=0.085 Score=49.10 Aligned_cols=46 Identities=15% Similarity=-0.002 Sum_probs=23.4
Q ss_pred CCcEEEE-ecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecCC
Q 019381 122 TGSITEI-YGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEG 167 (342)
Q Consensus 122 ~G~l~~I-~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e~ 167 (342)
.+.++.| .|..|+||||++.++|...+........+.+|+++|.+.
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~ 156 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP 156 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESS
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 3444444 488999999999999987762100000367899999873
No 492
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=93.40 E-value=0.064 Score=45.24 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=26.5
Q ss_pred EEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEe
Q 019381 126 TEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
Q Consensus 126 ~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~ 164 (342)
....+.+|+||||++.++|...+. .+.+|++++
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~------~G~rVll~d 37 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKA------AGYRTAGYK 37 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHH------TTCCEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCCEEEEc
Confidence 344446899999999999987776 567899987
No 493
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.39 E-value=0.46 Score=39.59 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-++|.|.+|+|||+|+..++..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5899999999999999987643
No 494
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.39 E-value=0.081 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHc
Q 019381 123 GSITEIYGEFRSGKTQLCHTLCVTC 147 (342)
Q Consensus 123 G~l~~I~G~~GsGKTtl~~~ia~~~ 147 (342)
|.++.|-|..||||||.+..++...
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999999999876544
No 495
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.34 E-value=0.043 Score=43.35 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=18.9
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCVT 146 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~~ 146 (342)
-++|.|++|+|||+|+..++..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988653
No 496
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.34 E-value=0.66 Score=43.38 Aligned_cols=27 Identities=11% Similarity=0.407 Sum_probs=19.6
Q ss_pred CCccchhHhhCCCCHHHHHHHHHcCCC
Q 019381 24 GPFPVEQLQASGIAALDVKKLKDAGLC 50 (342)
Q Consensus 24 ~~~~~~~l~~~gl~~~~~~~L~~~~~~ 50 (342)
.|-++....+++|++...+.|.+.|+.
T Consensus 51 ~p~~~~~f~~~~l~~~l~~~l~~~g~~ 77 (434)
T 2db3_A 51 VPQPIQHFTSADLRDIIIDNVNKSGYK 77 (434)
T ss_dssp CCCCCCCGGGSCCCHHHHHHHHHTTCC
T ss_pred CCCCcCChhhcCCCHHHHHHHHHcCCC
Confidence 344566677788888888888877764
No 497
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.33 E-value=0.22 Score=44.82 Aligned_cols=39 Identities=13% Similarity=-0.072 Sum_probs=27.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHHcccCCCCCCCCCceEEEecC
Q 019381 124 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAE 166 (342)
Q Consensus 124 ~l~~I~G~~GsGKTtl~~~ia~~~~~~~~~g~~~~~vl~i~~e 166 (342)
.-+.+.+|+|+|||..+...+....... .+.+++++...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~----~~~~~lil~P~ 83 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNEN----NGIEAIILTPT 83 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSS----SSCCEEEECSC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhccc----CCCcEEEEcCC
Confidence 4678999999999998776665544321 24578888654
No 498
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=93.29 E-value=0.2 Score=55.27 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=39.5
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHcccCCC-----CCCCCCceEEEecCCCCCHHHHHHHHHHc
Q 019381 120 VETGSITEIYGEFRSGKTQLCHTLCVTCQLPLD-----QGGGEGKAMYIDAEGTFRPQRLLQIADRY 181 (342)
Q Consensus 120 i~~G~l~~I~G~~GsGKTtl~~~ia~~~~~~~~-----~g~~~~~vl~i~~e~~~~~~rl~~~~~~~ 181 (342)
+..++-+++++|+|||||..+...++....... ....+.+++|+..-..+..+..+.+.+.+
T Consensus 92 l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 92 LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL 158 (1724)
T ss_dssp HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 446788999999999999987755554433111 11135689999876555555444444433
No 499
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.27 E-value=0.033 Score=56.86 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=32.3
Q ss_pred eEEEEeccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Q 019381 220 ALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 274 (342)
Q Consensus 220 ~lvviD~l~~l~~~~~~~~~~~~~r~~~l~~i~~~Lk~la~~~~~~vi~~~h~~~ 274 (342)
.++|+|++++.++... ...++..|+.+. +.|.|||+++|-..
T Consensus 401 ~llILDEPT~~Ld~~~------------~~~L~~~l~~L~-~~G~TVIvVeHdl~ 442 (842)
T 2vf7_A 401 VVYVLDEPSAGLHPAD------------TEALLSALENLK-RGGNSLFVVEHDLD 442 (842)
T ss_dssp CEEEEECTTTTCCGGG------------HHHHHHHHHHHH-TTTCEEEEECCCHH
T ss_pred eEEEeeCccccCCHHH------------HHHHHHHHHHHH-HcCCEEEEEcCCHH
Confidence 5999999999876421 346777777774 46999999999765
No 500
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.24 E-value=0.045 Score=43.75 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.3
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 019381 125 ITEIYGEFRSGKTQLCHTLCV 145 (342)
Q Consensus 125 l~~I~G~~GsGKTtl~~~ia~ 145 (342)
-++|.|++|+|||+|+..++.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 378999999999999998753
Done!