Query 019382
Match_columns 342
No_of_seqs 127 out of 228
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:00:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2970 Predicted membrane pro 100.0 1E-112 3E-117 806.2 22.9 312 6-339 4-319 (319)
2 PF04080 Per1: Per1-like ; In 100.0 7E-108 2E-112 775.6 24.3 254 68-331 2-267 (267)
3 COG5237 PER1 Predicted membran 100.0 6.7E-93 1.4E-97 658.9 18.7 301 9-335 5-315 (319)
4 PF05875 Ceramidase: Ceramidas 97.5 0.0095 2.1E-07 56.5 17.8 186 118-328 24-236 (262)
5 PF03006 HlyIII: Haemolysin-II 97.5 0.004 8.7E-08 56.6 14.4 155 165-321 44-220 (222)
6 PF12036 DUF3522: Protein of u 97.3 0.012 2.6E-07 53.8 14.9 85 169-261 34-129 (186)
7 TIGR01065 hlyIII channel prote 95.9 0.47 1E-05 43.7 15.6 150 165-324 39-198 (204)
8 PRK15087 hemolysin; Provisiona 95.6 0.6 1.3E-05 43.7 15.2 149 166-325 55-211 (219)
9 KOG0748 Predicted membrane pro 83.9 45 0.00098 32.6 18.6 153 179-335 98-275 (286)
10 COG1272 Predicted membrane pro 71.1 60 0.0013 30.9 11.1 41 166-206 59-104 (226)
11 PF10277 Frag1: Frag1/DRAM/Sfk 60.6 1.2E+02 0.0026 26.8 12.9 91 110-207 41-133 (215)
12 PF13965 SID-1_RNA_chan: dsRNA 60.1 86 0.0019 33.8 10.9 31 302-332 528-561 (570)
13 PF11416 Sed5p: Integral membr 50.3 8.2 0.00018 25.4 0.9 20 23-42 3-22 (29)
14 PF10709 DUF2511: Protein of u 28.3 23 0.0005 29.0 0.4 14 104-117 5-18 (87)
15 PF05984 Cytomega_UL20A: Cytom 21.3 74 0.0016 26.1 2.1 20 1-20 1-20 (100)
16 PF15174 PRNT: Prion-related p 20.4 41 0.00089 24.5 0.4 9 306-314 26-34 (51)
No 1
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.4e-112 Score=806.24 Aligned_cols=312 Identities=46% Similarity=0.882 Sum_probs=283.1
Q ss_pred HHHHHHHHHHhhccccCCCCCCChhHHHHHHHhhhcCCCCCCccccccCCCCCCCCCCCCccCcchhhhhccCCCCCCCC
Q 019382 6 LIALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCR 85 (342)
Q Consensus 6 ~~~~~~~~~~l~~~~~AS~GD~lp~f~~Cv~~C~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~l~l~~W~C~sdC~ 85 (342)
|..+++++.++ ...+||+||++|+|++||++||.++|+++.+. |+.+ +..|++.|++.|||.+||+
T Consensus 4 ~~v~~ll~~c~-~~~~aS~GD~~~~y~~Cv~~Ce~~~c~~~~~~-----~~~~--------~~~~l~~r~~~wdc~s~C~ 69 (319)
T KOG2970|consen 4 WVVKFLLLKCL-VQFEASPGDRKPGYVDCVQGCEANECSNNYID-----PQTN--------MFHPLYTRLWAWDCCSDCR 69 (319)
T ss_pred eehHHHHHHHH-hhhccCCCCCchhHHHHHHHHhhccCCCCcCC-----cccc--------ccchhHHHHHhcCcchhcC
Confidence 44444444554 56889999999999999999999999986432 2222 2349999999999999999
Q ss_pred cccchHhhHhhhhcCCCCccccccCCccccccccchHHHHHHHhhHHHHHhhhHHHHHHHHhhCCCCCCCccchhhhhHH
Q 019382 86 YHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLW 165 (342)
Q Consensus 86 Y~Cm~~~t~~r~~~~~~~~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 165 (342)
|+||+.++.+|.++|+|++||||||||+|++||||||||+||++||++||+|+.+ +|.+.+++++.+|+ ++|
T Consensus 70 Y~Cm~~t~~~~~~~~~pi~qfhGKWpFlrvlGiQEp~SviFS~lNl~~h~~g~~~------~r~~~~~~~~~r~~--~l~ 141 (319)
T KOG2970|consen 70 YQCMWTTESEFIKRGGPIPQFHGKWPFLRVLGIQEPFSVIFSFLNLITHYKGLVK------FRRPKKPNRPTRYE--RLW 141 (319)
T ss_pred ceeeeeehhhHHhcCCccccccCCcchhhhhhccchHHHHHHHHHHHHHHHHHhh------eecccCCCCcchhc--cch
Confidence 9999999999999999999999999999999999999999999999999999644 66677788888888 799
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCcchhhhhHhhHHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHHHHHHHhhhccccc
Q 019382 166 HIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE-AARVMVAAPLIAFVTTHILYLNFYK 244 (342)
Q Consensus 166 ~~~~~v~~~aW~~StiFH~RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~~~-~~r~~~~~~~~~~~~~Hi~yL~~~~ 244 (342)
++|+++|||||+||+|||+||+++|||||||+|+++|+||+|++++|+++++.. ..|.+++++++++|++||.||++++
T Consensus 142 ~I~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~ita~fla~ya~Hi~yls~~~ 221 (319)
T KOG2970|consen 142 LIYAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGMITAIFLAFYANHILYLSFYN 221 (319)
T ss_pred hhHHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999999999999999999999999999999999999999999999876 7889999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHh-hhcCCcchHHHHHHH--HHHHHHHhhhhcCCCCCcchhhhhhhhcCchhhHHH
Q 019382 245 LDHGLNMKVCLAMGVAQLLIWAIWAG-VTRHPSRWKLWLVVV--GEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYL 321 (342)
Q Consensus 245 fdY~YNM~~nv~~G~~~~~lW~~~~~-~~~~~~~~~~~~~v~--~~~~amsLEl~DFpP~~~~iDAHaLWHl~TIp~~~~ 321 (342)
|||||||++||++|++|+++|..|++ ++++|+.|+++++.+ ++.+||+|||+||||+.|+||||||||++|||++++
T Consensus 222 fdYgyNm~~~v~~g~iq~vlw~~~~~~~~~~~s~~~i~~~~i~~~~~LA~sLEi~DFpPy~~~iDAHALWHlaTIplt~~ 301 (319)
T KOG2970|consen 222 FDYGYNMIVCVAIGVIQLVLWLVWSFKKRNLPSFWRIWPILIVIFFFLAMSLEIFDFPPYAWLIDAHALWHLATIPLTIL 301 (319)
T ss_pred cccccceeeehhhHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHhhcCCchhhhcchHHHHHhhcCccHHH
Confidence 99999999999999999999999994 467899999775444 569999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHhhhc
Q 019382 322 WWSFIRDDSEFRTTALLK 339 (342)
Q Consensus 322 wy~Fl~~D~~~~~~~~~~ 339 (342)
||+|+.+|+++.|++++|
T Consensus 302 ~~~Fv~~d~~~~t~~~l~ 319 (319)
T KOG2970|consen 302 WYDFVSDDYDFATGVRLK 319 (319)
T ss_pred HHHHhhchhhhhcceecC
Confidence 999999999999998765
No 2
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=100.00 E-value=7.3e-108 Score=775.57 Aligned_cols=254 Identities=46% Similarity=0.840 Sum_probs=234.1
Q ss_pred CcchhhhhccCCCCCCCCcccchHhhHhhhhcCCCCccccccCCccccccccchHHHHHHHhhHHHHHhhhHHHHHHHHh
Q 019382 68 QEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYY 147 (342)
Q Consensus 68 ~~pl~l~l~~W~C~sdC~Y~Cm~~~t~~r~~~~~~~~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~ 147 (342)
++|+++|+++|||+|||||+|||++|++|+++|+|++||||||||+|++||||||||+||++|+++|++|+++++ +
T Consensus 2 ~~Pl~l~l~~W~C~~dC~Y~Cm~~~t~~r~~~g~~i~QfhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~~~~~~~----~ 77 (267)
T PF04080_consen 2 SLPLYLRLLGWDCESDCDYQCMWIITEERIKNGEPIVQFHGKWPFKRVLGIQEPASVLFSLLNLLAHYRGLRKFR----R 77 (267)
T ss_pred CCCcchHhcCCCCchhCcCcCcHHHHHHHHHcCCCcccccccccchhhhcCchHHHHHHHHHhHHHHHHHHHHHH----H
Confidence 579999999999999999999999999999999999999999999999999999999999999999999998854 3
Q ss_pred hCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhhhhccCCCcchhhhhHhhHHHHHHHHHHHHHHhccCc-hhHHHHHHH
Q 019382 148 KLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVR-DEAARVMVA 226 (342)
Q Consensus 148 ~~~~~~~~~~~y~~~~~~~~~~~v~~~aW~~StiFH~RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~-~~~~r~~~~ 226 (342)
+.|.+.+.++ .|+++++||||||+||||||+||+++|||||||||+++|++|+|++++|+++++ ++..+.+++
T Consensus 78 ~~~~~~p~~~------~~~~~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~ 151 (267)
T PF04080_consen 78 QVPRNSPMYP------YYIIYAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFT 151 (267)
T ss_pred hccCCCCCcC------eeehHHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 4444333332 257899999999999999999999999999999999999999999999999994 456678899
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCcc---------hHHH--HHHHHHHHHHHhhh
Q 019382 227 APLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRHPSR---------WKLW--LVVVGEGLAMLLQI 295 (342)
Q Consensus 227 ~~~~~~~~~Hi~yL~~~~fdY~YNM~~nv~~G~~~~~lW~~~~~~~~~~~~---------~~~~--~~v~~~~~amsLEl 295 (342)
++|+++|++||.||++.+|||||||++||++|++|+++|+.|++..+++.. ++++ ++++++.+||+|||
T Consensus 152 ~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~lam~LEl 231 (267)
T PF04080_consen 152 ALCIAFYIAHVSYLSFVRFDYGYNMKANVAVGLLQNILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILAMSLEL 231 (267)
T ss_pred HHHHHHHHHHHHHccccccccHhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998754333 7777 77889999999999
Q ss_pred hcCCCCCcchhhhhhhhcCchhhHHHHHHHHHhhhh
Q 019382 296 YDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDSE 331 (342)
Q Consensus 296 ~DFpP~~~~iDAHaLWHl~TIp~~~~wy~Fl~~D~~ 331 (342)
+||||+++++|||||||++||||+++||+|+++|+|
T Consensus 232 ~DFpP~~~~lDAHALWHl~Tip~~~~wy~Fl~~D~~ 267 (267)
T PF04080_consen 232 FDFPPIFWLLDAHALWHLATIPPTYLWYDFLIDDAE 267 (267)
T ss_pred hccCcccccchHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999986
No 3
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=6.7e-93 Score=658.86 Aligned_cols=301 Identities=30% Similarity=0.415 Sum_probs=259.8
Q ss_pred HHHHHHHhhccccCCCCCCChhHHHHHHHhhhc-CCCCCCccccccCCCCCCCCCCCCccCcchhhhhccCCCCCCCCcc
Q 019382 9 LFLLISCTLPALYASDGDADPIYKGCVEQCEKT-GCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYH 87 (342)
Q Consensus 9 ~~~~~~~l~~~~~AS~GD~lp~f~~Cv~~C~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~l~l~~W~C~sdC~Y~ 87 (342)
+++.++.+...+.|||||++|||++|+.+|++. .|..++ +|. ...|++.++++|||.|+|+|+
T Consensus 5 ~v~t~l~~~~~vt~s~gd~~~~~~~C~~~C~en~rc~~n~--------~dt--------n~~pL~~klf~wDc~s~cgy~ 68 (319)
T COG5237 5 VVVTLLVHCFLVTCSPGDNLDEMKYCFGKCFENSRCNLNK--------TDT--------NMFPLVDKLFGWDCDSKCGYM 68 (319)
T ss_pred ehHHHHHHHheeecCCCCCcHHHHHHHHHHHHhcccCCCc--------CCc--------ccccHHHHHHcCccccccchH
Confidence 333444445578899999999999999999966 885432 111 256899999999999999999
Q ss_pred cchHhhHhhhhcCCCCccccccCCccccccccchHHHHHHHhhHHHHHhhhHHHHHHHHhhCCCC-CCCccchhhhhHHH
Q 019382 88 CMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLR-PDKKTYYEYTGLWH 166 (342)
Q Consensus 88 Cm~~~t~~r~~~~~~~~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~ 166 (342)
|++..++-+.+.++|+.||||||||.||+||||+||++||++|+++||.|+.++. ++.+.. +.+|.+| +
T Consensus 69 C~~~~~~~~~~~n~~~~q~hGkW~F~rVlG~qEfFS~~FS~~Nfi~hy~gfh~m~----r~i~~e~~~~R~~~------l 138 (319)
T COG5237 69 CHLLCLKFTNSGNIKIYQRHGKWGFQRVLGMQEFFSALFSFMNFITHYIGFHRML----RKILRETRLGRLYY------L 138 (319)
T ss_pred HHHHHHHHhccCCchhhhhcCccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccccccceEE------e
Confidence 9999999999999999999999999999999999999999999999999998843 344433 3344444 3
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcchhhhhHhhHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHHHHHhhhccc
Q 019382 167 IYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRD----EAARVMVAAPLIAFVTTHILYLNF 242 (342)
Q Consensus 167 ~~~~v~~~aW~~StiFH~RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~~----~~~r~~~~~~~~~~~~~Hi~yL~~ 242 (342)
.++++||+||+||+|||+||+++|||+|||+|+++|++|+|.+.+|+.++.. +..|...+++++++|++||.||++
T Consensus 139 ~wv~igmlAwi~SsvFHird~~iTeklDYF~AgltVLfGfy~~lvrm~~~~~~p~~K~~~~~~~aifia~fa~Hi~rls~ 218 (319)
T COG5237 139 QWVYIGMLAWISSSVFHIRDNTITEKLDYFLAGLTVLFGFYMALVRMILIVSPPIEKATRGPLQAIFIAFFAYHIHRLSN 218 (319)
T ss_pred eHHHHHHHHHHHHhheeeeccchhhhHHHHHhhHHHHHHHHHHHHHHHHhhcCchHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999999999999999999999999999999998754 345666789999999999999999
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHhhhcCC--cchHHH--HHHHHHHHHHHhhhhcCCCCCcchhhhhhhhcCchhh
Q 019382 243 YKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRHP--SRWKLW--LVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPL 318 (342)
Q Consensus 243 ~~fdY~YNM~~nv~~G~~~~~lW~~~~~~~~~~--~~~~~~--~~v~~~~~amsLEl~DFpP~~~~iDAHaLWHl~TIp~ 318 (342)
++|||+|||++|+++|+.|++||...+..+++. ..||-+ .+|+.+.+||||||+||||+-++||||||||++|+|+
T Consensus 219 i~fdY~YNm~~n~aigv~q~iL~~~~s~~ny~~~g~~~kr~p~~~v~~~~lA~slElfDf~pya~lIDaHAlWHL~t~~~ 298 (319)
T COG5237 219 IEFDYVYNMISNCAIGVTQTILSHLVSFLNYRKLGHTFKRIPLFFVFFFFLAGSLELFDFPPYAYLIDAHALWHLITCIS 298 (319)
T ss_pred ccceeeehhhhcchHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHHhhhhhhhccCcHHHHhhHHHHhHhhhccc
Confidence 999999999999999999999999999876543 223433 4566788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHH
Q 019382 319 TYLWWSFIRDDSEFRTT 335 (342)
Q Consensus 319 ~~~wy~Fl~~D~~~~~~ 335 (342)
+.+.|+|..+|..|..+
T Consensus 299 t~~ly~F~~~d~~y~~n 315 (319)
T COG5237 299 TPFLYLFWSGDVYYHGN 315 (319)
T ss_pred hHHHHHhhhcceeeecc
Confidence 99999999999988765
No 4
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=97.49 E-value=0.0095 Score=56.53 Aligned_cols=186 Identities=16% Similarity=0.066 Sum_probs=96.5
Q ss_pred ccchHHHHHHHhhHHHHHhhhHHHHHHHHhhCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhhhhccCCCcchhhhhHh
Q 019382 118 IQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSS 197 (342)
Q Consensus 118 iQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~aW~~StiFH~RD~~~TEklDYf~ 197 (342)
+=||.=++-++.=+++-..|+.+. ++ .+.+. .+ . ..+..+..++ +-|+.||+-=...|+-+|=..
T Consensus 24 iAEf~NtlSNl~fi~~al~gl~~~----~~---~~~~~-~~---~---l~~~~l~~VG-iGS~~FHaTl~~~~ql~DelP 88 (262)
T PF05875_consen 24 IAEFWNTLSNLAFIVAALYGLYLA----RR---RGLER-RF---A---LLYLGLALVG-IGSFLFHATLSYWTQLLDELP 88 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH----hh---ccccc-hh---H---HHHHHHHHHH-HhHHHHHhChhhhHHHhhhhh
Confidence 568998887777777777776552 12 11111 11 1 2233333444 889999998889999999777
Q ss_pred hHHHHHHHHHHHHHHhccCchhHHHHHHHHHH----HHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHHH--hh
Q 019382 198 AVALLGFNFILAILRAFSVRDEAARVMVAAPL----IAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWA--GV 271 (342)
Q Consensus 198 A~a~vl~~l~~~~~R~f~l~~~~~r~~~~~~~----~~~~~~Hi~yL~~~~fdY~YNM~~nv~~G~~~~~lW~~~~--~~ 271 (342)
-.-..+..++...-|.. .++..|......+ ++..+.|...= +. . ..++.+|.....+.+.-. .+
T Consensus 89 Ml~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~~~~t~~~~~~~---~p-~----~~~~~f~~~~~~~~~~~~~~~~ 158 (262)
T PF05875_consen 89 MLWATLLFLYIVLTRRY--SSPRYRLALPLLLFIYAVVVTVLYFVLD---NP-V----FHQIAFASLVLLVILRSIYLIR 158 (262)
T ss_pred HHHHHHHHHHHHhcccc--cCchhhHHHHHHHHHHHHHHHHHHhhhc---cc-h----hhhhhHHHHHHHHHHHHHHHHH
Confidence 54333333333333322 1111122222221 12222333211 11 1 112233333333332111 11
Q ss_pred h------cCCcchHHH-HHHHHHHHHHHhhhhcC--------------CCCCcchhhhhhhhcCchhhHHHHHHHHHh
Q 019382 272 T------RHPSRWKLW-LVVVGEGLAMLLQIYDF--------------PPYRGFVDAHALYHAANIPLTYLWWSFIRD 328 (342)
Q Consensus 272 ~------~~~~~~~~~-~~v~~~~~amsLEl~DF--------------pP~~~~iDAHaLWHl~TIp~~~~wy~Fl~~ 328 (342)
. +++...++. ..++...+|..+-..|- .|+..++--|++||+.|---+++...+.+-
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~~~ 236 (262)
T PF05875_consen 159 RRVRDACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFVAY 236 (262)
T ss_pred HhcCchhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122223332 34445667888888886 356667789999999998888887776544
No 5
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=97.47 E-value=0.004 Score=56.56 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhhhhc-------cCCCcchhhhhHhhHHHHHHHHHHHHHHhccCchhHHHHHHHHH-HHHHHHHH
Q 019382 165 WHIYGILAMNSWFWSAVFHS-------RDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAP-LIAFVTTH 236 (342)
Q Consensus 165 ~~~~~~v~~~aW~~StiFH~-------RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~~~~~r~~~~~~-~~~~~~~H 236 (342)
..+|.+..+...+.||++|+ +.-..-.|+||.+-...+..+..-...-.+.-+........... ++++....
T Consensus 44 ~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 123 (222)
T PF03006_consen 44 FLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGIFLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIV 123 (222)
T ss_pred HHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhhhHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHH
Confidence 35577777777899999999 34566779999997666655543333223311122211111111 11111111
Q ss_pred hhhccccccc----ccchhhhHHHHHHHHHHHHHHHHhhhc---CCc-chHHHHHHHHHHHHHHhhhhcCCCCC--cchh
Q 019382 237 ILYLNFYKLD----HGLNMKVCLAMGVAQLLIWAIWAGVTR---HPS-RWKLWLVVVGEGLAMLLQIYDFPPYR--GFVD 306 (342)
Q Consensus 237 i~yL~~~~fd----Y~YNM~~nv~~G~~~~~lW~~~~~~~~---~~~-~~~~~~~v~~~~~amsLEl~DFpP~~--~~iD 306 (342)
..+ ...++ ..--+.+-++.|....+.......... .+. ........++-.+|+.+-..++|.-+ +-+|
T Consensus 124 -~~~-~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD 201 (222)
T PF03006_consen 124 -LSL-FPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFD 201 (222)
T ss_pred -hhc-chhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccccchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcC
Confidence 111 11211 222333445555544444332111111 111 11122333455678889999987632 2344
Q ss_pred ----hhhhhhcCchhhHHH
Q 019382 307 ----AHALYHAANIPLTYL 321 (342)
Q Consensus 307 ----AHaLWHl~TIp~~~~ 321 (342)
+|.+||+.++--+..
T Consensus 202 ~~g~sHqi~Hi~v~~~~~~ 220 (222)
T PF03006_consen 202 IWGHSHQIWHIFVVLAALC 220 (222)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 999999988754443
No 6
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=97.26 E-value=0.012 Score=53.78 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhhhccC-CC----cc----hhhhhHhhHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHHHHHHh
Q 019382 169 GILAMNSWFWSAVFHSRD-VE----LT----EKLDCSSAVALLGFNFILAILRAFSVRDEAAR--VMVAAPLIAFVTTHI 237 (342)
Q Consensus 169 ~~v~~~aW~~StiFH~RD-~~----~T----EklDYf~A~a~vl~~l~~~~~R~f~l~~~~~r--~~~~~~~~~~~~~Hi 237 (342)
+.++..+=++|+.+|+.| .+ ++ ++|||......++. ....++..-+++++..+ .++.++++++..
T Consensus 34 a~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~-~~vtl~~~a~~~~~~~~~l~~~~~~~~ai~~--- 109 (186)
T PF12036_consen 34 AFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLS-IWVTLCAMARLDEPLKSVLHYFGALVIAIFQ--- 109 (186)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHHHHH-HHHHHHHhccCCHHHHHHHHHHHHHHHHHHH---
Confidence 678889999999999999 55 44 47888776543332 23333333334433222 233333333332
Q ss_pred hhcccccccccchhhhHHHHHHHH
Q 019382 238 LYLNFYKLDHGLNMKVCLAMGVAQ 261 (342)
Q Consensus 238 ~yL~~~~fdY~YNM~~nv~~G~~~ 261 (342)
.. .+||+. |+..-+++|++-
T Consensus 110 -~~--~~~~~~-~~~~Pi~~~~~i 129 (186)
T PF12036_consen 110 -QK--DRWSLW-NTIGPILIGLLI 129 (186)
T ss_pred -hh--Ccccch-hhHHHHHHHHHH
Confidence 22 478854 566666666643
No 7
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=95.91 E-value=0.47 Score=43.66 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccCC-----CcchhhhhHhhHHHHHHHHHHHHHHhccCchhHHHHHHHHH--HHHHHHHHh
Q 019382 165 WHIYGILAMNSWFWSAVFHSRDV-----ELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAP--LIAFVTTHI 237 (342)
Q Consensus 165 ~~~~~~v~~~aW~~StiFH~RD~-----~~TEklDYf~A~a~vl~~l~~~~~R~f~l~~~~~r~~~~~~--~~~~~~~Hi 237 (342)
..+|+.-.+..-+.||+||+-+. .+-+|+||.+-..+|.-+..-...-.+ +.+....+..+. +...-+.+-
T Consensus 39 ~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lIaGsytP~~~~~~--~~~~~~~~~~~iw~la~~gi~~~ 116 (204)
T TIGR01065 39 FSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLIAGTYTPFLLLAL--PGPLGWTVLWIIWGLAIGGIIYK 116 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHHHHhhHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999998873 155689999877666665443333333 222222222211 111111111
Q ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCcchHHHHHH---HHHHHHHHhhhhcCCCCCcchhhhhhhhcC
Q 019382 238 LYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRHPSRWKLWLVV---VGEGLAMLLQIYDFPPYRGFVDAHALYHAA 314 (342)
Q Consensus 238 ~yL~~~~fdY~YNM~~nv~~G~~~~~lW~~~~~~~~~~~~~~~~~~v---~~~~~amsLEl~DFpP~~~~iDAHaLWHl~ 314 (342)
.+...+++. .-+..=+++|....+..-.. ...-+.. -+..++ +.-..++.+=..|+|--+ +-|.+||+.
T Consensus 117 -~~~~~~~r~-~r~~~y~~~G~~~v~~~~~~--~~~~~~~-~~~~l~~gg~~Y~~G~~fY~~~~p~~~---~~H~iwH~f 188 (204)
T TIGR01065 117 -LFFHKRPRW-LSLFLYLIMGWLVVLVIKPL--YHNLPGA-GFSLLAAGGLLYTVGAIFYALKWPIPF---TYHAIWHLF 188 (204)
T ss_pred -HHccCCCch-hHHHHHHHHHHHHHHHHHHH--HHhCCHH-HHHHHHHHhHHHHcchHheeecCCCCC---CcChHHHHH
Confidence 121223331 23334444454433221111 1111211 111111 223456666667877433 229999998
Q ss_pred chhhHHHHHH
Q 019382 315 NIPLTYLWWS 324 (342)
Q Consensus 315 TIp~~~~wy~ 324 (342)
.+-=+...|-
T Consensus 189 V~~g~~~h~~ 198 (204)
T TIGR01065 189 VLGASACHFV 198 (204)
T ss_pred HHHHHHHHHH
Confidence 8766666553
No 8
>PRK15087 hemolysin; Provisional
Probab=95.61 E-value=0.6 Score=43.68 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhhhhccCCC----cchhhhhHhhHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhhhc-
Q 019382 166 HIYGILAMNSWFWSAVFHSRDVE----LTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYL- 240 (342)
Q Consensus 166 ~~~~~v~~~aW~~StiFH~RD~~----~TEklDYf~A~a~vl~~l~~~~~R~f~l~~~~~r~~~~~~~~~~~~~Hi~yL- 240 (342)
.+|+.-.+.--..||+||+=..+ +=+|+||.+-..+|.-+..=...-.+ +.+..+.++.+.-....+.=+..+
T Consensus 55 ~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~llIaGsytP~~~~~~--~~~~~~~l~~~iW~~a~~Gi~~~~~ 132 (219)
T PRK15087 55 SLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLLIAGTYTPFLLVGL--DSPLARGLMIVIWSLALLGILFKLA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHHHHHhhHHHHHHHc--cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888889999999986521 33469999866655544332222222 233333222211111111111122
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHH---HHHHHHHhhhhcCCCCCcchhhhhhhhcCchh
Q 019382 241 NFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRHPSRWKLWLVVV---GEGLAMLLQIYDFPPYRGFVDAHALYHAANIP 317 (342)
Q Consensus 241 ~~~~fdY~YNM~~nv~~G~~~~~lW~~~~~~~~~~~~~~~~~~v~---~~~~amsLEl~DFpP~~~~iDAHaLWHl~TIp 317 (342)
...+|+ ...+..=+++|.+-.+.-. .+....+.. -+..++. .-+.++.+=..|-.|+ +|.+||+..+.
T Consensus 133 ~~~~~r-~l~~~~Yl~mGw~~v~~~~--~l~~~~~~~-~l~~l~~GG~~Y~~G~~fY~~~~~p~-----~H~IwH~fVl~ 203 (219)
T PRK15087 133 FAHRFK-VLSLVTYLAMGWLSLIVIY--QLAIKLAIG-GVTLLAVGGVVYSLGVIFYVCKRIPY-----NHAIWHGFVLG 203 (219)
T ss_pred hcCCCc-hHHHHHHHHHHHHHHHHHH--HHHHhCCHH-HHHHHHHHhHHHHhhHHHHccCCCCC-----chhHHHHHHHH
Confidence 123444 2345555555555433222 111122221 1111111 2245556656675665 89999998877
Q ss_pred hHHHHHHH
Q 019382 318 LTYLWWSF 325 (342)
Q Consensus 318 ~~~~wy~F 325 (342)
=+...|--
T Consensus 204 ga~~H~~a 211 (219)
T PRK15087 204 GSVCHFLA 211 (219)
T ss_pred HHHHHHHH
Confidence 77666643
No 9
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=83.91 E-value=45 Score=32.64 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=83.4
Q ss_pred HhhhhccCCCcch-------hhhhHhhHHHHHHHHHHHHHHhccCchhHHHHHH-HHHH-HHHHHHHhhhcccccc--cc
Q 019382 179 SAVFHSRDVELTE-------KLDCSSAVALLGFNFILAILRAFSVRDEAARVMV-AAPL-IAFVTTHILYLNFYKL--DH 247 (342)
Q Consensus 179 StiFH~RD~~~TE-------klDYf~A~a~vl~~l~~~~~R~f~l~~~~~r~~~-~~~~-~~~~~~Hi~yL~~~~f--dY 247 (342)
|+++|+=-.- .| ||||.+-.+.+.-+......-.|.-... .|.+. ...+ +++.+.=+. + ..++ .+
T Consensus 98 S~~~H~~~~~-s~~~~~~~~~lDY~GIs~li~gS~~~~~yy~f~c~~~-~~~iy~~~~~~lgi~~~~~~-l-~~~~~~~~ 173 (286)
T KOG0748|consen 98 SSLYHLFSCH-SEKVSRFFLKLDYAGISLLIIGSFLPIIYYAFYCHPF-FRLIYLPIILVLGLLAIFVS-L-SDKFRTPK 173 (286)
T ss_pred HHHHHHHhcc-cHHHHHHHHHccHHhhHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHheee-c-hhhhCCcc
Confidence 9999985554 44 6899997776666665544444432222 22222 1111 111111111 1 1122 11
Q ss_pred cchhhhHHHHHHHHHHH-HHHHHhhh---cCCc-chH---HHHHHHHHHHHHHhhhhcCCCCC--cchhh----hhhhhc
Q 019382 248 GLNMKVCLAMGVAQLLI-WAIWAGVT---RHPS-RWK---LWLVVVGEGLAMLLQIYDFPPYR--GFVDA----HALYHA 313 (342)
Q Consensus 248 ~YNM~~nv~~G~~~~~l-W~~~~~~~---~~~~-~~~---~~~~v~~~~~amsLEl~DFpP~~--~~iDA----HaLWHl 313 (342)
--+-+++++++....-+ =+.+.... +.+. ... ...-.++.++|..+=....|--+ +.+|- |-+||.
T Consensus 174 ~r~~R~~~f~~~~~~~i~P~~h~~~~~g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G~SHQifHv 253 (286)
T KOG0748|consen 174 RRPLRAGVFLLLGLSGILPLLHRLILFGGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFDIWGHSHQIFHV 253 (286)
T ss_pred chhhHHHHHHHHHHhhccHhhhheeeecCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccceeCChhHHHHH
Confidence 34677777776642211 11111111 1011 111 11233455677778778888633 45665 999999
Q ss_pred CchhhHHHHHHHHHhhhhhHHH
Q 019382 314 ANIPLTYLWWSFIRDDSEFRTT 335 (342)
Q Consensus 314 ~TIp~~~~wy~Fl~~D~~~~~~ 335 (342)
..+--++.+++=...|.+.+-+
T Consensus 254 ~vv~~a~~~~~a~~~~~~~~~~ 275 (286)
T KOG0748|consen 254 LVVLAALFHLEAVLLDYEWRHS 275 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998765
No 10
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=71.15 E-value=60 Score=30.88 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhhccCC-----CcchhhhhHhhHHHHHHHH
Q 019382 166 HIYGILAMNSWFWSAVFHSRDV-----ELTEKLDCSSAVALLGFNF 206 (342)
Q Consensus 166 ~~~~~v~~~aW~~StiFH~RD~-----~~TEklDYf~A~a~vl~~l 206 (342)
.+|+.--+..-..||++|+=-. .+=+|+||.+-..+|.-+-
T Consensus 59 ~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~vLIAgSy 104 (226)
T COG1272 59 SIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYVLIAGSY 104 (226)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHHHHHHhh
Confidence 4566666677899999997543 4668999998766655443
No 11
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=60.57 E-value=1.2e+02 Score=26.83 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=55.1
Q ss_pred CCccccccccchHHHHHHHhhHHHHHhhhHHHHHHHHhh-C-CCCCCCccchhhhhHHHHHHHHHHHHHHHHhhhhccCC
Q 019382 110 WPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYK-L-PLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDV 187 (342)
Q Consensus 110 WPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~-~-~~~~~~~~~y~~~~~~~~~~~v~~~aW~~StiFH~RD~ 187 (342)
||+.-=.|.++|-+-+|+++-.+.-.-..- ....+++ . +..++.+.. ....-.+.++++..+-+--++|+..|.
T Consensus 41 ~P~IS~~G~~~Pe~~if~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~~gl~~~a~~~~~~~ 116 (215)
T PF10277_consen 41 LPYISDIGAYPPESYIFRFGLNISAFFRLL--IVYLRYRYVRQLASKCSRW--LNILSLVFGLLSAIGLILLAIFQSTEH 116 (215)
T ss_pred cCchhHhhCcCchhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhccchhhH--HHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 999999999999999999876654433211 1112222 1 111111111 223445678888889999999988887
Q ss_pred CcchhhhhHhhHHHHHHHHH
Q 019382 188 ELTEKLDCSSAVALLGFNFI 207 (342)
Q Consensus 188 ~~TEklDYf~A~a~vl~~l~ 207 (342)
+ ..-+.+|......+..
T Consensus 117 ~---~~H~~~a~~ff~~~~i 133 (215)
T PF10277_consen 117 P---TVHYIGAVLFFVSSFI 133 (215)
T ss_pred H---HHHHHHHHHHHHHHHH
Confidence 7 4555666544444433
No 12
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=60.09 E-value=86 Score=33.78 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=20.0
Q ss_pred CcchhhhhhhhcCchh---hHHHHHHHHHhhhhh
Q 019382 302 RGFVDAHALYHAANIP---LTYLWWSFIRDDSEF 332 (342)
Q Consensus 302 ~~~iDAHaLWHl~TIp---~~~~wy~Fl~~D~~~ 332 (342)
.+.+|.|-+||..... .+++.-.++-||.+.
T Consensus 528 ~~f~D~HDiwH~~SA~alffsf~~l~~lDddL~~ 561 (570)
T PF13965_consen 528 LGFFDWHDIWHFLSAIALFFSFLVLLTLDDDLDN 561 (570)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4778999999997643 334444555555543
No 13
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=50.34 E-value=8.2 Score=25.43 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=15.2
Q ss_pred CCCCCChhHHHHHHHhhhcC
Q 019382 23 SDGDADPIYKGCVEQCEKTG 42 (342)
Q Consensus 23 S~GD~lp~f~~Cv~~C~~~~ 42 (342)
|.-||--|||.||....+.+
T Consensus 3 ~IqdRT~EFqqcV~s~~k~n 22 (29)
T PF11416_consen 3 SIQDRTIEFQQCVSSYKKRN 22 (29)
T ss_dssp HHHB-HHHHHHHHHHHHHH-
T ss_pred chhHhhHHHHHHHHHHHHHH
Confidence 34589999999999998765
No 14
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.27 E-value=23 Score=28.97 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=10.8
Q ss_pred ccccccCCcccccc
Q 019382 104 VKYHGKWPFRRVYG 117 (342)
Q Consensus 104 ~QFhGKWPF~Rv~G 117 (342)
.||-+||||.|==|
T Consensus 5 ~~fG~~Wpft~eev 18 (87)
T PF10709_consen 5 FEFGDKWPFTVEEV 18 (87)
T ss_pred HHccCCCCceeeeE
Confidence 37888999998533
No 15
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=21.28 E-value=74 Score=26.13 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=13.7
Q ss_pred CchhhHHHHHHHHHHhhccc
Q 019382 1 MAHSHLIALFLLISCTLPAL 20 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~ 20 (342)
|+||.|++-++++.+.++.+
T Consensus 1 MaRRlwiLslLAVtLtVALA 20 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALA 20 (100)
T ss_pred CchhhHHHHHHHHHHHHHhh
Confidence 88999988666665555433
No 16
>PF15174 PRNT: Prion-related protein testis-specific
Probab=20.41 E-value=41 Score=24.54 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=7.0
Q ss_pred hhhhhhhcC
Q 019382 306 DAHALYHAA 314 (342)
Q Consensus 306 DAHaLWHl~ 314 (342)
-.|||||+-
T Consensus 26 vthSLW~Lq 34 (51)
T PF15174_consen 26 VTHSLWHLQ 34 (51)
T ss_pred HHHHHHhhc
Confidence 469999984
Done!