Query 019382
Match_columns 342
No_of_seqs 127 out of 228
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lbw_A M2 protein; proton chan 30.7 32 0.0011 20.5 2.1 14 254-267 6-19 (23)
2 3bkd_A Transmembrane domain of 29.2 34 0.0012 20.9 2.1 13 255-267 10-22 (26)
3 3ux4_A Acid-activated UREA cha 19.9 2.8E+02 0.0094 24.8 7.1 28 193-220 73-103 (195)
4 2kih_A Matrix protein 2; S31N, 15.7 1.1E+02 0.0039 20.6 2.7 17 253-269 12-28 (43)
5 2ljb_A M2 protein, BM2 protein 14.9 1.3E+02 0.0043 19.7 2.6 14 254-267 13-26 (35)
6 2plx_B Peptide inhibitor; heli 10.2 97 0.0033 18.6 0.9 13 28-40 13-26 (26)
7 2l2r_A Antimicrobial peptide e 9.9 1.5E+02 0.005 19.5 1.8 16 26-41 17-32 (37)
8 2cmy_B Beta trypsin, veronica 8.7 1.1E+02 0.0036 19.5 0.8 13 29-41 20-32 (34)
9 1mqs_B SED5P, integral membran 8.0 1.2E+02 0.0041 21.4 0.9 21 22-42 6-26 (50)
10 2vzy_A RV0802C; transferase, G 7.0 1E+02 0.0036 25.3 0.2 33 89-121 183-215 (218)
No 1
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=30.65 E-value=32 Score=20.50 Aligned_cols=14 Identities=14% Similarity=0.702 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 019382 254 CLAMGVAQLLIWAI 267 (342)
Q Consensus 254 nv~~G~~~~~lW~~ 267 (342)
--++|+++.++|++
T Consensus 6 a~iigIlHLiLwIl 19 (23)
T 3lbw_A 6 ASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34689999999985
No 2
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=29.18 E-value=34 Score=20.90 Aligned_cols=13 Identities=31% Similarity=0.945 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 019382 255 LAMGVAQLLIWAI 267 (342)
Q Consensus 255 v~~G~~~~~lW~~ 267 (342)
-++|+++.++|++
T Consensus 10 ~iiGilHLiLwIl 22 (26)
T 3bkd_A 10 SIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3589999999985
No 3
>3ux4_A Acid-activated UREA channel; transport protein; HET: XP4; 3.26A {Helicobacter pylori}
Probab=19.86 E-value=2.8e+02 Score=24.76 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=21.1
Q ss_pred hhhHhhHHHHHHH---HHHHHHHhccCchhH
Q 019382 193 LDCSSAVALLGFN---FILAILRAFSVRDEA 220 (342)
Q Consensus 193 lDYf~A~a~vl~~---l~~~~~R~f~l~~~~ 220 (342)
.||++|+...+|+ +|+++-|.++++.+.
T Consensus 73 ~~~ya~a~~lLFgFTYL~Vain~~~~lD~rg 103 (195)
T 3ux4_A 73 TSFYGPATGLLFGFTYLYAAINHTFGLDWRP 103 (195)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 6788887778888 456888999998764
No 4
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=15.68 E-value=1.1e+02 Score=20.58 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019382 253 VCLAMGVAQLLIWAIWA 269 (342)
Q Consensus 253 ~nv~~G~~~~~lW~~~~ 269 (342)
+--++|+++.++|++=-
T Consensus 12 aa~iiGIlHLiLwildR 28 (43)
T 2kih_A 12 AANIIGILHLILWILDR 28 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33468999999999543
No 5
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=14.93 E-value=1.3e+02 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.776 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 019382 254 CLAMGVAQLLIWAI 267 (342)
Q Consensus 254 nv~~G~~~~~lW~~ 267 (342)
--++|+++.++|++
T Consensus 13 A~IigiLHlilWil 26 (35)
T 2ljb_A 13 ASIIGILHFIAWTI 26 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34689999999984
No 6
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=10.24 E-value=97 Score=18.61 Aligned_cols=13 Identities=38% Similarity=1.078 Sum_probs=9.4
Q ss_pred Chh-HHHHHHHhhh
Q 019382 28 DPI-YKGCVEQCEK 40 (342)
Q Consensus 28 lp~-f~~Cv~~C~~ 40 (342)
+|| -+.|++.||+
T Consensus 13 spellrrcldncek 26 (26)
T 2plx_B 13 SPELLRRCLDNCEK 26 (26)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHhcccC
Confidence 344 5889999974
No 7
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=9.86 E-value=1.5e+02 Score=19.49 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=12.8
Q ss_pred CCChhHHHHHHHhhhc
Q 019382 26 DADPIYKGCVEQCEKT 41 (342)
Q Consensus 26 D~lp~f~~Cv~~C~~~ 41 (342)
|.--+-|+|+.+|+..
T Consensus 17 dePWr~QECm~qCrrR 32 (37)
T 2l2r_A 17 DEPWRVQECVSQCRRR 32 (37)
T ss_dssp SCGGGHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHh
Confidence 5666789999999854
No 8
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=8.74 E-value=1.1e+02 Score=19.49 Aligned_cols=13 Identities=31% Similarity=0.997 Sum_probs=7.9
Q ss_pred hhHHHHHHHhhhc
Q 019382 29 PIYKGCVEQCEKT 41 (342)
Q Consensus 29 p~f~~Cv~~C~~~ 41 (342)
..-+.|++.|+++
T Consensus 20 ellrrcldnceke 32 (34)
T 2cmy_B 20 ELLRRCLDNCEKE 32 (34)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHhhhhc
Confidence 3468899999864
No 9
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=8.03 E-value=1.2e+02 Score=21.41 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.5
Q ss_pred CCCCCCChhHHHHHHHhhhcC
Q 019382 22 ASDGDADPIYKGCVEQCEKTG 42 (342)
Q Consensus 22 AS~GD~lp~f~~Cv~~C~~~~ 42 (342)
.|.=||..||+.|+++=++..
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~ 26 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRN 26 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC
T ss_pred ccccccCHHHHHHHHHHHhcc
Confidence 456799999999999888654
No 10
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=7.02 E-value=1e+02 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=23.0
Q ss_pred chHhhHhhhhcCCCCccccccCCccccccccch
Q 019382 89 MLAREGEREKVGDKPVKYHGKWPFRRVYGIQEP 121 (342)
Q Consensus 89 m~~~t~~r~~~~~~~~QFhGKWPF~Rv~GiQEp 121 (342)
+....++..+.....+|..|-.|+.+++|+-||
T Consensus 183 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 215 (218)
T 2vzy_A 183 FRLTRDDWQRHRTVEVRVDGFDRCRPLFGPLEP 215 (218)
T ss_dssp EEEEHHHHHHHCCCCCEEESCGGGHHHHCC---
T ss_pred EEEcHHHhcccCCCCceEeChhHHHHHhCCCCC
Confidence 444455555555668999999999999999887
Done!