BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019383
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana
GN=ULP1D PE=1 SV=1
Length = 584
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 160/382 (41%), Gaps = 77/382 (20%)
Query: 10 KRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELG 69
K+ IDW + + D+VP EL + + PTP SDD +L + D++L
Sbjct: 16 KKDFVIDWSSAM-DKEDEVP-ELEIVNTTKPTPPPPPTFFSDDQTDSPKL---LTDRDLD 70
Query: 70 VRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGA----------------- 112
++ R K + + LPDKG+KI + LE+E +RR L G+
Sbjct: 71 EQLERKKAILT-LGPGLPDKGEKIRLKIADLEEEKQRRVLEGSKMEVDRSSKVVSSTSSG 129
Query: 113 ---VPVCLDIDGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAF 169
+P + + S D Q + S+S+F++VF + D + AF
Sbjct: 130 SDVLPQGNAVSKDTSRGNADSKDTSRQGNADSKEVSRSTFSAVFSK---PKTDSQSKKAF 186
Query: 170 DKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKW--------------PFHKGDKSFN 215
KEL L C+RRK ++ GR+ V S W F G K
Sbjct: 187 GKELEDLG-CERRKHKA-------GRKPVTRLSNGWRLLPDVGKAEHSAKQFDSGLKESK 238
Query: 216 SNGSQKDRASLTCPSHQSGEN---------------SSSCLPKKKESFEVLPSKNPRLRK 260
N K+ P S + +S ++ S+E PS++ R RK
Sbjct: 239 GNKKSKEPYGKKRPMESSTYSLIDDDDDDDDDDDNDTSGHETPREWSWEKSPSQSSRRRK 298
Query: 261 EQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICY 320
+ +++ DE EE++ S EQA E E + I YP+R DP V++C
Sbjct: 299 KSEDTVINVDE-------EEAQPST---VAEQAAELPEGL-QEDICYPTRDDPHFVQVCL 347
Query: 321 TDINHLAPAAYLTSPIMNFYIR 342
D+ LAP YLTSP+MNFY+R
Sbjct: 348 KDLECLAPREYLTSPVMNFYMR 369
>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana
GN=ULP1C PE=1 SV=1
Length = 571
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 150/384 (39%), Gaps = 91/384 (23%)
Query: 10 KRKLNIDWEEVLPGRNDDVP-AELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQEL 68
K LNIDW++ L +++VP E+I PP S +P R + D EL
Sbjct: 14 KTMLNIDWDDALG--DEEVPELEIIATDKIPPREPTLS---GYEPAVSV---RSLRDNEL 65
Query: 69 GVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQS 128
+ R + +++ L DKG+KI + LE E +RR + +GC L +
Sbjct: 66 DDHLKRQRSLLTRLGDKLADKGEKIRNRIGELEYEKQRRMFQQRTKMQDADNGCQILEKP 125
Query: 129 PSSDCFT-----------QRTPSPQIQSKSSFTSVFREKM-------------------- 157
SSD F Q T + S+S+F + F + +
Sbjct: 126 KSSDVFMRASTASKDTSGQGTSGSKDVSRSTFAAHFSDNLKMGPQPVKLVNDKLQDLGRG 185
Query: 158 ----EENRD-CREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDK 212
+ NRD E N + L L+ C + +N S S+ KGD+
Sbjct: 186 SWISKANRDSIIEKNNVWRSLPRLSKC------------KVSLKNFYSESKD---PKGDR 230
Query: 213 SFN-SNGSQKDRAS----LTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQN--LV 265
N + G K S L + + S + P ++ RK+ + ++
Sbjct: 231 RPNEAYGKGKPNESSPYLLVDDDDGDDDKVIGYETPRHWSLKASPLQSSSCRKKSDDKVI 290
Query: 266 LLDEDE--SP--VEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPES---VEI 318
LDEDE SP VE+A E EG + IYYPS + V++
Sbjct: 291 NLDEDEPLSPMVVEEACELPEG-----------------LPEDIYYPSSDQSDGRDLVQV 333
Query: 319 CYTDINHLAPAAYLTSPIMNFYIR 342
D+ L+P YLTSP++NFYIR
Sbjct: 334 SLKDLKCLSPGEYLTSPVINFYIR 357
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis
thaliana GN=ULP2B PE=2 SV=3
Length = 931
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYI 341
+ YP + DP++V IC D+ L P ++ I++FYI
Sbjct: 384 VVYP-KGDPDAVSICKRDVELLQPETFVNDTIIDFYI 419
>sp|P27884|CAC1A_RABIT Voltage-dependent P/Q-type calcium channel subunit alpha-1A
OS=Oryctolagus cuniculus GN=CACNA1A PE=1 SV=1
Length = 2424
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 76 KDTYSKVRHCLPDKGKKILATVTRLEKECERRR 108
+D YS HCLP +G+ A++ RL E +RRR
Sbjct: 2080 QDGYSDSEHCLPMEGQARAASMPRLPAENQRRR 2112
>sp|Q8C633|CABS1_MOUSE Calcium-binding and spermatid-specific protein 1 OS=Mus musculus
GN=Cabs1 PE=1 SV=1
Length = 391
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 60 DRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDI 119
D IP E I D + V C PD TV +L E+ +L DI
Sbjct: 31 DNTIPKSE--TTITSEGDHVTSVNDCTPDG--DFSTTVNKLTPTKEKLKLED------DI 80
Query: 120 DGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSVF 153
+GC KLT P + T T +P + K S T F
Sbjct: 81 EGCLKLTTLPEKE-ITTPTETPNSKPKGSITENF 113
>sp|Q9ZA21|HGPA_HAEIF Hemoglobin and hemoglobin-haptoglobin-binding protein A
OS=Haemophilus influenzae GN=hgpA PE=1 SV=1
Length = 1077
Score = 31.6 bits (70), Expect = 9.8, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 157 MEENRDCREANAFDKELSILAHCDR---------RKMRSDGDLSQRGRQNVRSSSRKWPF 207
++ NRD + A KELS+ H D + ++ DLS +GR++V S+ PF
Sbjct: 832 IQPNRDLQPETAKTKELSLTVHNDMGYITTSVFDTRYQNFIDLSYQGRRDVHGHSKLIPF 891
Query: 208 H 208
H
Sbjct: 892 H 892
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,312,287
Number of Sequences: 539616
Number of extensions: 6007393
Number of successful extensions: 13998
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 13919
Number of HSP's gapped (non-prelim): 131
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)