Query 019383
Match_columns 342
No_of_seqs 32 out of 34
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 15:14:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xph_A Sentrin-specific protea 95.7 0.00098 3.4E-08 60.2 -1.7 28 315-342 43-70 (238)
2 3j21_W 50S ribosomal protein L 38.6 15 0.00052 28.1 2.1 52 57-109 4-63 (72)
3 3u5e_h 60S ribosomal protein L 33.6 74 0.0025 26.7 5.7 53 56-109 6-63 (120)
4 1vq8_V 50S ribosomal protein L 31.0 23 0.00077 27.0 1.9 53 57-110 7-67 (71)
5 2zkr_v 60S ribosomal protein L 26.8 29 0.00099 29.3 2.0 54 56-110 6-67 (123)
6 3v1a_A Computational design, M 25.6 81 0.0028 22.7 3.9 43 64-106 2-45 (48)
7 3iv1_A Tumor susceptibility ge 24.5 39 0.0013 26.6 2.2 41 66-106 14-57 (78)
8 3v2d_2 50S ribosomal protein L 22.3 1.3E+02 0.0046 22.7 4.9 52 57-109 11-69 (72)
9 2zjr_V 50S ribosomal protein L 19.5 60 0.0021 24.3 2.3 52 58-110 5-63 (67)
10 3bbo_Z Ribosomal protein L29; 18.1 35 0.0012 30.5 0.8 54 55-110 66-127 (173)
No 1
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=95.69 E-value=0.00098 Score=60.24 Aligned_cols=28 Identities=32% Similarity=0.596 Sum_probs=26.2
Q ss_pred ceeeecccccccCccccccCcccceecC
Q 019383 315 SVEICYTDINHLAPAAYLTSPIMNFYIR 342 (342)
Q Consensus 315 ~vei~~~Di~cL~P~~~L~spiinFYi~ 342 (342)
-|.|+.+|+.||.|.++||+.|||||++
T Consensus 43 ~~~l~~~Dl~~L~~~~wLND~iI~fy~~ 70 (238)
T 2xph_A 43 RLTITRKDIQTLNHLNWLNDEIINFYMN 70 (238)
T ss_dssp TEEECHHHHHTTSTTCCCCHHHHHHHHH
T ss_pred CcEEeHHHHhhcCCCCccCHHHHHHHHH
Confidence 5789999999999999999999999973
No 2
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.62 E-value=15 Score=28.09 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=39.0
Q ss_pred hhhccCCCchHHHHHHHHhhhhhhh------ccc--CCCcchHhHHHHHHHHHHHHHHHHh
Q 019383 57 EELDRQIPDQELGVRIARMKDTYSK------VRH--CLPDKGKKILATVTRLEKECERRRL 109 (342)
Q Consensus 57 ~el~~~lsD~eL~E~I~R~k~~L~g------l~~--rLPDkG~Klr~~I~~le~E~dRRka 109 (342)
.|| +.+|+.||.++|...+..|-. +|. -=|-.=..+|+.|.+|.=.+..|.+
T Consensus 4 ~el-r~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~ 63 (72)
T 3j21_W 4 SEI-REMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLR 63 (72)
T ss_dssp HHH-HHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-hhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 466 899999999999999887653 332 2355556788899999888777655
No 3
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=33.56 E-value=74 Score=26.67 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=41.8
Q ss_pred hhhhccCCCchHHHHHHHHhhhhhhh-----cccCCCcchHhHHHHHHHHHHHHHHHHh
Q 019383 56 GEELDRQIPDQELGVRIARMKDTYSK-----VRHCLPDKGKKILATVTRLEKECERRRL 109 (342)
Q Consensus 56 ~~el~~~lsD~eL~E~I~R~k~~L~g-----l~~rLPDkG~Klr~~I~~le~E~dRRka 109 (342)
..|| +.+|+.||.++|...+..|.. ..-.||-.=..+|+.|.+|.=.+..|.+
T Consensus 6 ~~EL-R~~s~eEL~~~L~eLK~ELf~LRfq~atgql~~~Ir~vRR~IARi~Tvl~er~~ 63 (120)
T 3u5e_h 6 AYEL-RTKSKEQLASQLVDLKKELAELKVQKLSRPSLPKIKTVRKSIACVLTVINEQQR 63 (120)
T ss_dssp HHHH-TTSCHHHHHHHHHHHHHHHHHHHHHHTTSSCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3567 999999999999999887542 2223388889999999999888877754
No 4
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=31.00 E-value=23 Score=27.00 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=36.7
Q ss_pred hhhccCCCchHHHHHHHHhhhhhhhc----cc-CCCc---chHhHHHHHHHHHHHHHHHHhh
Q 019383 57 EELDRQIPDQELGVRIARMKDTYSKV----RH-CLPD---KGKKILATVTRLEKECERRRLA 110 (342)
Q Consensus 57 ~el~~~lsD~eL~E~I~R~k~~L~gl----~~-rLPD---kG~Klr~~I~~le~E~dRRkar 110 (342)
.|| +.+|+.||.++|...+..|-.| +- +-++ +=..+|+.|.|+.=.+..|...
T Consensus 7 ~el-r~~s~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~er~~~ 67 (71)
T 1vq8_V 7 QEI-RDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGDL 67 (71)
T ss_dssp HHH-HHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466 9999999999999998886531 11 1223 3356778888888877666543
No 5
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=26.75 E-value=29 Score=29.29 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=36.7
Q ss_pred hhhhccCCCchHHHHHHHHhhhhhhhcc----cC-CCc---chHhHHHHHHHHHHHHHHHHhh
Q 019383 56 GEELDRQIPDQELGVRIARMKDTYSKVR----HC-LPD---KGKKILATVTRLEKECERRRLA 110 (342)
Q Consensus 56 ~~el~~~lsD~eL~E~I~R~k~~L~gl~----~r-LPD---kG~Klr~~I~~le~E~dRRkar 110 (342)
..|| +.+|+.||.++|...+..|-.|. -+ .++ .=..+|+.|.+|.=.+..|...
T Consensus 6 ~~EL-R~~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er~~~ 67 (123)
T 2zkr_v 6 ARDL-RGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKE 67 (123)
T ss_dssp HHHH-TTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567 99999999999999998865321 11 223 3356778888888887777554
No 6
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=25.59 E-value=81 Score=22.75 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=33.1
Q ss_pred CchHHHHHHHHhhhhhhh-cccCCCcchHhHHHHHHHHHHHHHH
Q 019383 64 PDQELGVRIARMKDTYSK-VRHCLPDKGKKILATVTRLEKECER 106 (342)
Q Consensus 64 sD~eL~E~I~R~k~~L~g-l~~rLPDkG~Klr~~I~~le~E~dR 106 (342)
||..|.|+|-=+++++.- -..|==|-=.-|.+.|..|..|++|
T Consensus 2 ~~dPL~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 2 SGSPLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999872 2333336667788999999999886
No 7
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.55 E-value=39 Score=26.62 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhhhhhh---cccCCCcchHhHHHHHHHHHHHHHH
Q 019383 66 QELGVRIARMKDTYSK---VRHCLPDKGKKILATVTRLEKECER 106 (342)
Q Consensus 66 ~eL~E~I~R~k~~L~g---l~~rLPDkG~Klr~~I~~le~E~dR 106 (342)
+.|+|.+.+.+..|.. ...-|-.|+.||..-|.+|++|...
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~ 57 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4677888888877764 5566889999999999999998765
No 8
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=22.29 E-value=1.3e+02 Score=22.72 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=38.3
Q ss_pred hhhccCCCchHHHHHHHHhhhhhhh-----cccCC--CcchHhHHHHHHHHHHHHHHHHh
Q 019383 57 EELDRQIPDQELGVRIARMKDTYSK-----VRHCL--PDKGKKILATVTRLEKECERRRL 109 (342)
Q Consensus 57 ~el~~~lsD~eL~E~I~R~k~~L~g-----l~~rL--PDkG~Klr~~I~~le~E~dRRka 109 (342)
.|| +.+|+.||.+++...+..|-. ..-.| |-.=..+|+.|.|+.=.+..|.+
T Consensus 11 ~el-r~~s~eEL~~~L~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er~~ 69 (72)
T 3v2d_2 11 EEA-RKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEKRR 69 (72)
T ss_dssp HHH-HHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 466 899999999999988877542 11223 55667788899999888877654
No 9
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=19.54 E-value=60 Score=24.29 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=36.8
Q ss_pred hhccCCCchHHHHHHHHhhhhhhhc----ccCCCcch---HhHHHHHHHHHHHHHHHHhh
Q 019383 58 ELDRQIPDQELGVRIARMKDTYSKV----RHCLPDKG---KKILATVTRLEKECERRRLA 110 (342)
Q Consensus 58 el~~~lsD~eL~E~I~R~k~~L~gl----~~rLPDkG---~Klr~~I~~le~E~dRRkar 110 (342)
|| +.+|+.||.+++...+..|-.| +-+=+++- ..+|+.|.||.=.+..|...
T Consensus 5 el-r~~s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (67)
T 2zjr_V 5 EM-RNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAELARK 63 (67)
T ss_dssp TT-TTSCHHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HH-HhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 9999999999999988876431 11223333 56778888888888776554
No 10
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=18.08 E-value=35 Score=30.54 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=38.9
Q ss_pred ChhhhccCCCchHHHHHHHHhhhhhhh------cccCC--CcchHhHHHHHHHHHHHHHHHHhh
Q 019383 55 SGEELDRQIPDQELGVRIARMKDTYSK------VRHCL--PDKGKKILATVTRLEKECERRRLA 110 (342)
Q Consensus 55 ~~~el~~~lsD~eL~E~I~R~k~~L~g------l~~rL--PDkG~Klr~~I~~le~E~dRRkar 110 (342)
-..|| +.+|+.||.++|...+..|-. +|. | |-+=..+|+.|.||.=.+..|.+.
T Consensus 66 Ka~EL-R~lS~eEL~ekL~eLKkELFnLRfQkATGQ-LeNpsrIR~VRRdIARIkTVLrErel~ 127 (173)
T 3bbo_Z 66 ELKEI-RSKTTEQLQEEVVDLKGELFMLRLQKSARN-EFKSSDFRRMKKQVARMLTVKREREIK 127 (173)
T ss_dssp CHHHH-HHSCHHHHHHHHHHHTTHHHHHHHHHHHCC-CSCHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred CHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677 999999999999999988653 222 3 222356778899998888777553
Done!