Query 019383
Match_columns 342
No_of_seqs 32 out of 34
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 15:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019383.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019383hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gycw1 a.2.2.1 (W:1-60) Ribos 17.4 52 0.0038 22.3 3.3 47 57-104 4-57 (60)
2 d2zjrv1 a.2.2.1 (V:1-66) Ribos 15.3 1.3E+02 0.0097 20.4 5.2 52 58-110 5-63 (66)
3 d1r73a_ a.2.2.1 (A:) Ribosomal 14.7 80 0.0058 21.7 3.8 52 57-109 4-62 (66)
4 d2j0121 a.2.2.1 (2:12-62) Ribo 12.0 36 0.0026 22.6 1.1 21 61-81 3-23 (51)
5 d1daaa_ e.17.1.1 (A:) D-aminoa 9.7 1.3E+02 0.0098 24.0 4.3 34 67-100 43-76 (277)
6 d2enda_ a.18.1.1 (A:) T4 endon 9.4 87 0.0063 25.0 2.8 22 88-109 61-82 (137)
7 d1pv0a_ a.2.12.1 (A:) Sporulat 9.2 58 0.0042 21.7 1.3 38 61-110 2-39 (46)
8 d1khba1 c.91.1.1 (A:260-622) C 9.0 1.5E+02 0.011 26.9 4.6 45 56-104 315-360 (363)
9 d1nkta3 c.37.1.19 (A:-15-225,A 8.8 2.1E+02 0.015 25.1 5.4 49 60-110 47-95 (288)
10 d1vqov1 a.2.2.1 (V:1-65) Ribos 8.3 72 0.0052 21.9 1.6 48 57-105 6-61 (65)
No 1
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=17.37 E-value=52 Score=22.25 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=31.1
Q ss_pred hhhccCCCchHHHHHHHHhhhhhhhc-----ccCCCc--chHhHHHHHHHHHHHH
Q 019383 57 EELDRQIPDQELGVRIARMKDTYSKV-----RHCLPD--KGKKILATVTRLEKEC 104 (342)
Q Consensus 57 ~el~~~lsD~eL~E~I~R~k~~L~gl-----~~rLPD--kG~Klr~~I~~le~E~ 104 (342)
.|| +.+|+.||.+.+...+..|-.+ .-.|.+ .-.++|+.|.||.=.+
T Consensus 4 ~el-r~ls~~eL~~~l~~l~~el~~lRfq~~~gql~~~~~i~~~Rk~IARi~Tvl 57 (60)
T d2gycw1 4 KEL-REKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLL 57 (60)
T ss_dssp HHH-HHSCHHHHHHHHHHHHHHHHHCCCSTTTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHH
Confidence 456 8999999999999998886532 112332 3345667777765443
No 2
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=15.25 E-value=1.3e+02 Score=20.44 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=37.8
Q ss_pred hhccCCCchHHHHHHHHhhhhhhh-----cccCCCcch--HhHHHHHHHHHHHHHHHHhh
Q 019383 58 ELDRQIPDQELGVRIARMKDTYSK-----VRHCLPDKG--KKILATVTRLEKECERRRLA 110 (342)
Q Consensus 58 el~~~lsD~eL~E~I~R~k~~L~g-----l~~rLPDkG--~Klr~~I~~le~E~dRRkar 110 (342)
|| +.+|+.||.+.|...+..|-. ....|.+-. .++|+.|.+|.=.+.-|...
T Consensus 5 el-r~~s~~eL~~~l~~lk~elf~LRfq~~tgql~n~~~ik~~Rk~IARi~Tvl~er~~~ 63 (66)
T d2zjrv1 5 EM-RNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAELARK 63 (66)
T ss_dssp TT-TTSCHHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45 999999999999988877542 223444433 57788888888888777654
No 3
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=14.72 E-value=80 Score=21.66 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=38.3
Q ss_pred hhhccCCCchHHHHHHHHhhhhhhh-----cccCCC--cchHhHHHHHHHHHHHHHHHHh
Q 019383 57 EELDRQIPDQELGVRIARMKDTYSK-----VRHCLP--DKGKKILATVTRLEKECERRRL 109 (342)
Q Consensus 57 ~el~~~lsD~eL~E~I~R~k~~L~g-----l~~rLP--DkG~Klr~~I~~le~E~dRRka 109 (342)
.|| +.+|+.+|.+.|...+..|.. ..-.|. -.-.++|+.|.+|.=.+..|++
T Consensus 4 ~el-r~ls~~eL~~~l~~l~~el~~LRfq~~~gql~~~~~i~~~Rk~IARi~Tvl~er~~ 62 (66)
T d1r73a_ 4 SEL-RNYTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILREREL 62 (66)
T ss_dssp SHH-HHSCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 356 899999999999988877642 222343 3456888999999888877765
No 4
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus thermophilus [TaxId: 274]}
Probab=12.04 E-value=36 Score=22.60 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.4
Q ss_pred cCCCchHHHHHHHHhhhhhhh
Q 019383 61 RQIPDQELGVRIARMKDTYSK 81 (342)
Q Consensus 61 ~~lsD~eL~E~I~R~k~~L~g 81 (342)
+.+|+.+|..+|...+..|..
T Consensus 3 R~ls~~eL~~~l~elk~el~~ 23 (51)
T d2j0121 3 RKLSPVELEKLVREKKRELME 23 (51)
T ss_dssp TTTHHHHHHHHHHHHHHHSSS
T ss_pred hhCCHHHHHHHHHHHHHHHHH
Confidence 889999999999999988753
No 5
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]}
Probab=9.70 E-value=1.3e+02 Score=23.95 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhhhhhcccCCCcchHhHHHHHHHH
Q 019383 67 ELGVRIARMKDTYSKVRHCLPDKGKKILATVTRL 100 (342)
Q Consensus 67 eL~E~I~R~k~~L~gl~~rLPDkG~Klr~~I~~l 100 (342)
-|++|++|+......++-.+|+..+.+...+..+
T Consensus 43 ~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~~~~~~ 76 (277)
T d1daaa_ 43 TVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76 (277)
T ss_dssp SHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhhhhcccchHHHHHHHHHHH
Confidence 4899999999988888888999888777655554
No 6
>d2enda_ a.18.1.1 (A:) T4 endonuclease V {Bacteriophage T4 [TaxId: 10665]}
Probab=9.36 E-value=87 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.7
Q ss_pred cchHhHHHHHHHHHHHHHHHHh
Q 019383 88 DKGKKILATVTRLEKECERRRL 109 (342)
Q Consensus 88 DkG~Klr~~I~~le~E~dRRka 109 (342)
|||+-|+.+-+.|..|+.+|--
T Consensus 61 ~Kl~yL~kRy~~L~~Em~~RGy 82 (137)
T d2enda_ 61 DKLEFLRKRQIELIAECLKRGF 82 (137)
T ss_dssp TBHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999844
No 7
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis [TaxId: 1423]}
Probab=9.16 E-value=58 Score=21.69 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=23.5
Q ss_pred cCCCchHHHHHHHHhhhhhhhcccCCCcchHhHHHHHHHHHHHHHHHHhh
Q 019383 61 RQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLA 110 (342)
Q Consensus 61 ~~lsD~eL~E~I~R~k~~L~gl~~rLPDkG~Klr~~I~~le~E~dRRkar 110 (342)
+.|||.=|-|.-=+-+. | +|- +--|.-|++|+.||.+-
T Consensus 2 ~~LsDdLLiEsYykA~E-l-----~L~------~dFI~Lie~Ei~RRsL~ 39 (46)
T d1pv0a_ 2 RKLSDELLIESYFKATE-M-----NLN------RDFIELIENEIKRRSLG 39 (46)
T ss_dssp CSCCHHHHHHHHHHHHH-H-----TCC------HHHHHHHHHHHHHTTCT
T ss_pred CcccHHHHHHHHHHHHH-h-----cCC------HHHHHHHHHHHHHHhhh
Confidence 45677777665433332 1 111 23578899999999764
No 8
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.97 E-value=1.5e+02 Score=26.92 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=33.7
Q ss_pred hhhhccCCCchHHHHHHHHhhhhhh-hcccCCCcchHhHHHHHHHHHHHH
Q 019383 56 GEELDRQIPDQELGVRIARMKDTYS-KVRHCLPDKGKKILATVTRLEKEC 104 (342)
Q Consensus 56 ~~el~~~lsD~eL~E~I~R~k~~L~-gl~~rLPDkG~Klr~~I~~le~E~ 104 (342)
-++| -++.-....+++++++.+|. .++.+|| +.|...+.+|++-|
T Consensus 315 ~~el-~~vd~~~w~~E~~~i~~~f~~~~g~~LP---~el~~eL~~Lk~RL 360 (363)
T d1khba1 315 MMEL-FSISKEFWDKEVEDIEKYLVDQVNADLP---CEIEREILALKQRI 360 (363)
T ss_dssp HHHH-TCCCHHHHHHHHHHHHHHHHHHHGGGCC---HHHHHHHHHHHHHH
T ss_pred HHHH-hCCCHHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHH
Confidence 5666 67777888899999999884 7999999 44666666665544
No 9
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.75 E-value=2.1e+02 Score=25.05 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=34.0
Q ss_pred ccCCCchHHHHHHHHhhhhhhhcccCCCcchHhHHHHHHHHHHHHHHHHhh
Q 019383 60 DRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLA 110 (342)
Q Consensus 60 ~~~lsD~eL~E~I~R~k~~L~gl~~rLPDkG~Klr~~I~~le~E~dRRkar 110 (342)
+..|||.+|..+....+..|.. .+-+..=..+.--.=|+.+|--+|.+-
T Consensus 47 l~~LSDeEL~~kT~eLK~rla~--~k~gesLDdiLpEAFAlVREAakRtlG 95 (288)
T d1nkta3 47 VEKLTDAELRAKTDEFKRRLAD--QKNPETLDDLLPEAFAVAREAAWRVLD 95 (288)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHC--SSSCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHHHHhh--hcccccHHHHHHHHHHHHHHHHHhhcc
Confidence 4899999999999988877631 111111123456667899999999764
No 10
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=8.31 E-value=72 Score=21.91 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=31.3
Q ss_pred hhhccCCCchHHHHHHHHhhhhhhh-----cccCCCcch---HhHHHHHHHHHHHHH
Q 019383 57 EELDRQIPDQELGVRIARMKDTYSK-----VRHCLPDKG---KKILATVTRLEKECE 105 (342)
Q Consensus 57 ~el~~~lsD~eL~E~I~R~k~~L~g-----l~~rLPDkG---~Klr~~I~~le~E~d 105 (342)
.|| +.+|+.||.+++...+..|-. .+-+-+++- .++|+.|.||.=-+.
T Consensus 6 ~el-r~ls~~eL~~~l~elk~El~~LR~~q~~~gql~~~~~ik~~Rk~IARi~Tvl~ 61 (65)
T d1vqov1 6 QEI-RDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQG 61 (65)
T ss_dssp HHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Confidence 456 999999999999998887542 222334433 345666766654443
Done!