BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019384
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 182/340 (53%), Gaps = 27/340 (7%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGG 61
P E+ + P D I L FS + + L+ SW VR + D+ + + + MH G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 62 PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
PVLD C+ DD S F+AS D T + S + + +HDAPV+ I + A V+TG
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
SWDK+LK WD R ++ + PER Y ++ VVATA R + VY L N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQL-----PERCYCADVIYPMAVVATAERGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR
Sbjct: 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
+ A +DI Y VN IAFHP++GT AT G DG + WD + + +L + I+A
Sbjct: 262 SNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320
Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNE 327
F+ +G + A ASSY + +G + P + + IF+R+ E
Sbjct: 321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE 360
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 16/313 (5%)
Query: 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCF 68
++ P D IS+++ LL++SWD S+ +Y + NV L + P+L C F
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 69 HD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
D D + + + + L+ S + + C Y ++I SWD +
Sbjct: 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 125 KCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
+ DPR G + +++++ +RL+V V + L
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184
Query: 181 -QRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKS 236
ES LKYQ R V P GYA SS++GRVA+EFFD + + +K++AF+CHR +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296
++ YPVN+I F P + T G DG ++ W+ +K++ ++K+ D
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 297 GRLLAVASSYTFE 309
L S TF+
Sbjct: 305 NILCLATSDDTFK 317
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 16/313 (5%)
Query: 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCF 68
++ P D IS+++ LL++SWD S+ +Y + NV L + P+L C F
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 69 HD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
D D + + + + L+ S + + C Y ++I SWD +
Sbjct: 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 125 KCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
+ DPR G + +++++ +RL+V V + L
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184
Query: 181 -QRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKS 236
ES LKYQ R V P GYA SS++GRVA+EFFD + + +K++AF+CHR +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296
++ YPVN+I F P + T G DG ++ W+ +K++ ++K+ D
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 297 GRLLAVASSYTFE 309
L S TF+
Sbjct: 305 NILCLATSDDTFK 317
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 16/313 (5%)
Query: 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCF 68
++ P D IS+++ LL++SWD S+ +Y + NV L + P+L C F
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 69 HD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
D D + + + + L+ S + + C Y ++I SWD +
Sbjct: 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 125 KCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
+ DPR G + +++++ +RL+V V + L
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184
Query: 181 -QRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKS 236
ES LKYQ R V P GYA SS++GRVA+EFFD + + +K++AF+CHR +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296
++ YPVN+I F P + T G DG ++ W+ +K++ ++K+ D
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 297 GRLLAVASSYTFE 309
L S TF+
Sbjct: 305 NILCLATSDDTFK 317
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 16/313 (5%)
Query: 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCF 68
++ P D IS+++ LL++SWD S+ +Y + NV L + P+L C F
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 69 HD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
D D + + + + L+ S + + C Y ++I SWD +
Sbjct: 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 125 KCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
+ DPR G + ++++ +RL+V V + L
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTXDTNSSRLIVGXNNSQVQWFRLPLCEDDN 184
Query: 181 -QRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKS 236
ES LKYQ R V P GYA SS++GRVA+EFFD + + +K++AF+CHR +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296
++ YPVN+I F P + T G DG ++ W+ +K++ ++K+ D
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 297 GRLLAVASSYTFE 309
L S TF+
Sbjct: 305 NILCLATSDDTFK 317
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 27/289 (9%)
Query: 40 DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGK 98
DK+V+L++ + +L+ H V F D ++++D +L +G+ L
Sbjct: 37 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 96
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA-----SGQERTLVGTYPQP------- 146
H + VR + +S + + S DK++K W+ G +G ++ G P
Sbjct: 97 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 156
Query: 147 ---ERVYSLSLVGNRLVVATAGRHVNVYDLR----NMSQPEQRRESSLKYQTRCVRCYPN 199
++ L +L+ G +V+ + + + ++K R +
Sbjct: 157 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 216
Query: 200 GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC-HRKSEAGRDIV---YPVNAIAFHPIY 255
TG++ SSV G VA + AS + K +R + + + VN +AF P
Sbjct: 217 LTGHS-SSVRG-VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG 274
Query: 256 GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
T A+ D V +W+ N + L + + +S+ ++FS DG+ +A AS
Sbjct: 275 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 116/271 (42%), Gaps = 30/271 (11%)
Query: 40 DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGK 98
DK+V+L++ + L+ H V F D ++++D +L +G+ L
Sbjct: 324 DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 383
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158
H + VR + +S + + S DK++K W+ G Q TL G V+ ++ +
Sbjct: 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTG---HSSSVWGVAFSPDD 438
Query: 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD 218
+A+A + ++K R + TG++ SSV G VA
Sbjct: 439 QTIASA-----------------SDDKTVKLWNRNGQLLQTLTGHS-SSVRG-VAFSPDG 479
Query: 219 LSEASQAKKYAFKC-HRKSEAGRDIV---YPVNAIAFHPIYGTFATGGCDGFVNVWDGNN 274
+ AS + K +R + + + V +AF P T A+ D V +W+ N
Sbjct: 480 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 538
Query: 275 KKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
+ L + + +S+ ++FS DG+ +A ASS
Sbjct: 539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASS 569
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 116/273 (42%), Gaps = 36/273 (13%)
Query: 40 DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGK 98
DK+V+L++ + +L+ H V F D ++++D +L +G+ L
Sbjct: 160 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 219
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA-----SGQERTLVGTYPQPERVYSLS 153
H + VR + +S + + S DK++K W+ G +G ++ G +P+
Sbjct: 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPD------ 273
Query: 154 LVGNRLVVATAGRHVNVYDLRN--MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR 211
G + A+ + V +++ RN + Q SS+ V P+G A +S +
Sbjct: 274 --GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV----WGVAFSPDGQTIASASDDKT 326
Query: 212 VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWD 271
V + + H ++ G V +AF P T A+ D V +W+
Sbjct: 327 VKLWNRN------------GQHLQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 272 GNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
N + L + + +S+ ++FS DG+ +A AS
Sbjct: 373 -RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 127/294 (43%), Gaps = 37/294 (12%)
Query: 40 DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGK 98
DK+V+L++ + +L+ H V F D ++++D +L +G+ L
Sbjct: 242 DKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTG 301
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--G 156
H + V + +S + + S DK++K W+ G Q TL G V+ ++ G
Sbjct: 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TLTG---HSSSVWGVAFSPDG 356
Query: 157 NRLVVATAGRHVNVYD-----LRNMS-----------QPEQRR------ESSLKYQTRCV 194
+ A+ + V +++ L+ ++ P+ + + ++K R
Sbjct: 357 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 416
Query: 195 RCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC-HRKSEAGRDIV---YPVNAIA 250
+ TG++ SSV G VA D + AS + K +R + + + V +A
Sbjct: 417 QLLQTLTGHS-SSVWG-VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA 474
Query: 251 FHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
F P T A+ D V +W+ N + L + + +S+ ++FS DG+ +A AS
Sbjct: 475 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
V +AF P T A+ D V +W+ N + L + + +S+ ++FS DG+ +A AS
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 76
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 206
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-S 76
+ +S+++FS + + L SS DK ++++ A H + D + DS+ S
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
AS D T++ S GK L H V C ++ + +++GS+D+S++ WD + +G+
Sbjct: 105 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK--TGK 162
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRESSLKY 189
+ + P + G+ +V ++ ++D L+ + + S +K+
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
PNG ++++ ++ +D S+ K Y
Sbjct: 223 S-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 253
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 120 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 176
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 177 VHFNRDGSLI-VSSSY 191
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 91 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 208
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 28/224 (12%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDSS 73
+ +S+++FS + + L SS DK ++++ A G+F H + D + DS+
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 74 GF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
SAS D T++ S GK L H V C ++ + +++GS+D+S++ WD +
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK- 161
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRES 185
+G+ + + P + G+ +V ++ ++D L+ + + S
Sbjct: 162 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
+K+ PNG ++++ ++ +D S+ K Y
Sbjct: 221 FVKFS-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 255
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 122 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 178
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 179 VHFNRDGSLI-VSSSY 193
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 190
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-S 76
+ +S+++FS + + L SS DK ++++ A H + D + DS+ S
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
AS D T++ S GK L H V C ++ + +++GS+D+S++ WD + +G+
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK--TGK 146
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRESSLKY 189
+ + P + G+ +V ++ ++D L+ + + S +K+
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
PNG ++++ ++ +D S+ K Y
Sbjct: 207 S-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 237
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 104 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 160
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 161 VHFNRDGSLI-VSSSY 175
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 184
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 28/224 (12%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDSS 73
+ +S+++FS + + L SS DK ++++ A G+F H + D + DS+
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 74 GF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
SAS D T++ S GK L H V C ++ + +++GS+D+S++ WD +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK- 137
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRES 185
+G+ + + P + G+ +V ++ ++D L+ + + S
Sbjct: 138 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
+K+ PNG ++++ ++ +D S+ K Y
Sbjct: 197 FVKFS-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 231
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 98 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 155 VHFNRDGSLI-VSSSY 169
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 184
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 28/224 (12%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDSS 73
+ +S+++FS + + L SS DK ++++ A G+F H + D + DS+
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 74 GF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
SAS D T++ S GK L H V C ++ + +++GS+D+S++ WD +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK- 137
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRES 185
+G+ + + P + G+ +V ++ ++D L+ + + S
Sbjct: 138 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
+K+ PNG ++++ ++ +D S+ K Y
Sbjct: 197 FVKFS-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 231
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 98 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 155 VHFNRDGSLI-VSSSY 169
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 190
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-S 76
+ +S+++FS + + L SS DK ++++ A H + D + DS+ S
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
AS D T++ S GK L H V C ++ + +++GS+D+S++ WD + +G+
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK--TGK 146
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRESSLKY 189
+ + P + G+ +V ++ ++D L+ + + S +K+
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
PNG ++++ ++ +D S+ K Y
Sbjct: 207 S-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 237
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 104 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 160
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 161 VHFNRDGSLI-VSSSY 175
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 201
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-S 76
+ +S+++FS + + L SS DK ++++ A H + D + DS+ S
Sbjct: 40 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 99
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
AS D T++ S GK L H V C ++ + +++GS+D+S++ WD + +G+
Sbjct: 100 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK--TGK 157
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRESSLKY 189
+ + P + G+ +V ++ ++D L+ + + S +K+
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
PNG ++++ ++ +D S+ K Y
Sbjct: 218 S-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 248
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 115 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 171
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 172 VHFNRDGSLI-VSSSY 186
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 185
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 28/224 (12%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDSS 73
+ +S+++FS + + L SS DK ++++ A G+F H + D + DS+
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 74 GF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
SAS D T++ S GK L H V C ++ + +++GS+D+S++ WD +
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK- 138
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRES 185
+G+ + + P + G+ +V ++ ++D L+ + + S
Sbjct: 139 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 197
Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
+K+ PNG ++++ ++ +D S+ K Y
Sbjct: 198 FVKFS-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 232
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 99 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 155
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 156 VHFNRDGSLI-VSSSY 170
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 183
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-S 76
+ +S+++FS + + L SS DK ++++ A H + D + DS+ S
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
AS D T++ S GK L H V C ++ + +++GS+D+S++ WD + +G+
Sbjct: 82 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK--TGK 139
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRESSLKY 189
+ + P + G+ +V ++ ++D L+ + + S +K+
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
PNG ++++ ++ +D S+ K Y
Sbjct: 200 S-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 230
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 97 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 153
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 154 VHFNRDGSLI-VSSSY 168
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 190
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 28/224 (12%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDSS 73
+ +S+++FS + + L SS DK ++++ A G+F H + D + DS+
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 74 GF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
SAS D T++ S GK L H V C ++ + +++GS+D+S++ WD +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK- 143
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRES 185
+G+ + + P + G+ +V ++ ++D L+ + + S
Sbjct: 144 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
+K+ PNG ++++ ++ +D S+ K Y
Sbjct: 203 FVKFS-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 237
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 104 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 160
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 161 VHFNRDGSLI-VSSSY 175
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 180
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-S 76
+ +S+++FS + + L SS DK ++++ A H + D + DS+ S
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
AS D T++ S GK L H V C ++ + +++GS+D+S++ WD + +G+
Sbjct: 79 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK--TGK 136
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRESSLKY 189
+ + P + G+ +V ++ ++D L+ + + S +K+
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
PNG ++++ ++ +D S+ K Y
Sbjct: 197 S-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 227
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 94 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 150
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 151 VHFNRDGSLI-VSSSY 165
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 72 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 189
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 28/224 (12%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDSS 73
+ +S+++FS + + L SS DK ++++ A G+F H + D + DS+
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 74 GF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
SAS D T++ S GK L H V C ++ + +++GS+D+S++ WD +
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK- 142
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRES 185
+G+ + + P + G+ +V ++ ++D L+ + + S
Sbjct: 143 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 201
Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
+K+ PNG ++++ ++ +D S+ K Y
Sbjct: 202 FVKFS-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 236
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 103 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 159
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 160 VHFNRDGSLI-VSSSY 174
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 187
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-S 76
+ +S+++FS + + L SS DK ++++ A H + D + DS+ S
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
AS D T++ S GK L H V C ++ + +++GS+D+S++ WD + +G+
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK--TGK 143
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRESSLKY 189
+ + P + G+ +V ++ ++D L+ + + S +K+
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
PNG ++++ ++ +D S+ K Y
Sbjct: 204 S-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 234
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 101 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 158 VHFNRDGSLI-VSSSY 172
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 187
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-S 76
+ +S+++FS + + L SS DK ++++ A H + D + DS+ S
Sbjct: 26 TKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
AS D T++ S GK L H V C ++ + +++GS+D+S++ WD + +G+
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK--TGK 143
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRESSLKY 189
+ + P + G+ +V ++ ++D L+ + + S +K+
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
PNG ++++ ++ +D S+ K Y
Sbjct: 204 S-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 234
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 101 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 158 VHFNRDGSLI-VSSSY 172
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR GK L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 187
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-S 76
+ +S+++FS + + L SS DK ++++ A H + D + DS+ S
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
AS D T++ S GK L H V C ++ + +++GS+D+S++ WD + +G+
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK--TGK 143
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD------LRNMSQPEQRRESSLKY 189
+ + P + G+ +V ++ ++D L+ + + S +K+
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229
PNG ++++ ++ +D S+ K Y
Sbjct: 204 S-------PNGKYILAATLDN--TLKLWDYSKGKCLKTYT 234
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD K L + ++A
Sbjct: 101 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 158 VHFNRDGSLI-VSSSY 172
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR G L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 187
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDSS 73
+ +S+++FS + + L SS DK ++++ A G+F H + D + DS+
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 74 GF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130
SAS D T++ S GK L H V C ++ + +++GS+D+S++ WD +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD L + ++A
Sbjct: 101 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSA 157
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 158 VHFNRDGSLI-VSSSY 172
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GIS++ +S+ S+ L+ +S DK+++++D S+ L+ H V C F+ S+ S S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D +VR G L H PV + ++ +++ S+D + WD ASGQ
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 187
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
+TL+ P S G ++ AT + ++D
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDSS 73
+ +S+++FS + + L SS DK ++++ A G+F H + D + DS+
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 74 GF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130
SAS D T++ S GK L H V C ++ + +++GS+D+S++ WD +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
KC + + + V+ N F+P +G D V +WD L + ++A
Sbjct: 101 KCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSA 157
Query: 291 LSFSRDGRLLAVASSY 306
+ F+RDG L+ V+SSY
Sbjct: 158 VHFNRDGSLI-VSSSY 172
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFH-DDSSGFSASA 79
+ ++ S+ L SWD +RL+D +A V F+ H VL F D+ SAS
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 80 DHTVR--------RLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWD 128
D T++ + S G E H V C+ +S Q +++ SWDK++K W+
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEG----HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 93/232 (40%), Gaps = 29/232 (12%)
Query: 84 RRLV-FSHGKEDILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVG 141
RRL SH ED++ D GQ ++GSWD L+ WD A R VG
Sbjct: 424 RRLTGHSHFVEDVVLSSD------------GQFALSGSWDGELRLWD-LAAGVSTRRFVG 470
Query: 142 TYPQPERVYSLSLVGNRLVVATAGRHVNVYD-LRNMSQPEQRRESSLKYQTRCVRCYPNG 200
+ + + SL ++V A+ R + +++ L + CVR PN
Sbjct: 471 -HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 201 TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFAT 260
+ S ++ ++LS C +S Y V+ +A P A+
Sbjct: 530 LQPTIVSASWDKTVKVWNLSN----------CKLRSTLAGHTGY-VSTVAVSPDGSLCAS 578
Query: 261 GGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGD 312
GG DG V +WD K+LY + + I AL FS + L A+ + + D
Sbjct: 579 GGKDGVVLLWDLAEGKKLYSL-EANSVIHALCFSPNRYWLCAATEHGIKIWD 629
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 28 SNHSDHLLVS-SWDKSVRLYDASANVLRGEFMHG----GPVLDCCFHDDSSGFSASADHT 82
S D++++S S D+++++++A GE +H + C + S S D T
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAET----GECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 220
Query: 83 VRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG 141
+R G+ +L H A VRC++Y +V++G++D +K WDP E L
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPE----TETCLHT 274
Query: 142 TYPQPERVYSLSLVGNRLVVATAGRHVNVYDL 173
RVYSL G +V + + V+D+
Sbjct: 275 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 43/204 (21%)
Query: 97 GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-ERTLVGTYPQPERVYSLSLV 155
G D + C+++ ++++GS D +LK W +G+ RTLVG V+S +
Sbjct: 116 GHDDHVITCLQF--CGNRIVSGSDDNTLKVWS--AVTGKCLRTLVG---HTGGVWSSQMR 168
Query: 156 GNRLVVATAGRHVNVYD----------------LRNMSQPEQRRESSLKYQTRCVRCYPN 199
N ++ + R + V++ +R M E+R S + T +R +
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT--LRVWDI 226
Query: 200 GTGYALSSVEGRVA----MEFFDLSEASQAKKYAFK--------CHRKSEAGRDIVYPVN 247
TG L + G VA +++ S A + K C + + VY +
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 286
Query: 248 AIAFHPIYGTFATGGCDGFVNVWD 271
H + G+ T + VWD
Sbjct: 287 FDGIHVVSGSLDTS-----IRVWD 305
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 18/255 (7%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFH-DDSSGFSASA 79
+S++ SN+ + + +SWD S+RL++ + +F+ H VL F D+ S
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 80 DHTVRRLVFSHGKEDIL--GKHDAPVRCIEY--SYAAGQVITGSWDKSLKCWDPRGASGQ 135
D+ +R L G H V C+ + S A +++G WD +K WD A+G
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL--ATG- 186
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVR 195
R + V S+++ + + A++ + V L ++++ E E + +
Sbjct: 187 -RLVTDLKGHTNYVTSVTVSPDGSLCASSDKD-GVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 196 CYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY 255
PN ++ +G + FDL + K + + + + IV +IA+
Sbjct: 245 FSPNRYWMCAATEKG---IRIFDL----ENKDIIVELAPEHQGSKKIVPECVSIAWSADG 297
Query: 256 GTFATGGCDGFVNVW 270
T +G D + VW
Sbjct: 298 STLYSGYTDNVIRVW 312
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 115 VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGR---HVNV 170
V+TGS D +K W R ER + + ++ +S+ + + L +A + H+ +
Sbjct: 51 VVTGSLDDLVKVWKWR----DERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106
Query: 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF 230
+DL N Q + + T P+ A + G+V + S K+Y+
Sbjct: 107 WDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNI----FGVESGKKEYSL 160
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
K + +IA+ P A+G DG +N++D K L+ + I +
Sbjct: 161 DTRGKF---------ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS 211
Query: 291 LSFSRDGRLLAVAS 304
L+FS D +LL AS
Sbjct: 212 LTFSPDSQLLVTAS 225
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/204 (17%), Positives = 79/204 (38%), Gaps = 23/204 (11%)
Query: 96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV 155
L H V ++ S+ + S D ++ WD +G++ + P + S
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE--NGKQIKSIDAGPVDAWTLAFSPD 133
Query: 156 GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY---PNGTGYALSSVEGRV 212
L T VN++ + + ++E SL + + + P+G A +++G +
Sbjct: 134 SQYLATGTHVGKVNIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 213 AMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG 272
+ FD+ A+ + + H P+ ++ F P T DG++ ++D
Sbjct: 189 NI--FDI--ATGKLLHTLEGH---------AMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Query: 273 NNKKRLYQYSKYPTSIAALSFSRD 296
+ S + + + ++F D
Sbjct: 236 QHANLAGTLSGHASWVLNVAFCPD 259
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 24/178 (13%)
Query: 28 SNHSDHLLVSSWDKSVRLYDASANVLRGEFM--------HGGPVLDCCFH-DDSSGFSAS 78
SN S HLL +S D +V L+D +A G+ + H V D +H S F +
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 79 ADHTVRRLVFSHGKEDILGK-------HDAPVRCIEYS-YAAGQVITGSWDKSLKCWDPR 130
AD ++L+ + + K H A V C+ ++ Y+ + TGS DK++ WD R
Sbjct: 249 ADD--QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 131 GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQRRESS 186
+ T + +V+ N ++A++G R +NV+DL + + EQ E +
Sbjct: 307 NLKLKLHTFESHKDEIFQVHWSP--HNETILASSGTDRRLNVWDLSKIGE-EQSAEDA 361
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 246 VNAIAFHPIYGTF--ATGGCDGFVNVWDGNN-KKRLYQYSKYPTSIAALSFSRDGRLLAV 302
VN ++F+P Y F ATG D V +WD N K +L+ + + I + +S +
Sbjct: 278 VNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 303 AS 304
+S
Sbjct: 337 SS 338
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 28 SNHSDHLLVSSWDKSVRLYDASANVLRGEFM--------HGGPVLDCCFH-DDSSGFSAS 78
SN S HLL +S D +V L+D +A G+ + H V D +H S F +
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 79 ADHTVRRLVFSHGKEDILGK-------HDAPVRCIEYS-YAAGQVITGSWDKSLKCWDPR 130
AD ++L + + K H A V C+ ++ Y+ + TGS DK++ WD R
Sbjct: 249 ADD--QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 131 GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQRRESS 186
+ T + +V+ N ++A++G R +NV+DL + + EQ E +
Sbjct: 307 NLKLKLHTFESHKDEIFQVHWSP--HNETILASSGTDRRLNVWDLSKIGE-EQSAEDA 361
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 246 VNAIAFHPIYGTF--ATGGCDGFVNVWDGNN-KKRLYQYSKYPTSIAALSFSRDGRLLAV 302
VN ++F+P Y F ATG D V +WD N K +L+ + + I + +S +
Sbjct: 278 VNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 303 AS 304
+S
Sbjct: 337 SS 338
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 35/268 (13%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFH-DDSSGFSASA 79
+S+L S + + SSWDK++RL+D F+ H V F D+ SA A
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
Query: 80 DHTVR------RLVFSHGKEDILGKHDAPVRCIEYS---YAAGQV-------ITGSWDKS 123
+ ++ FS +++ H V C+ YS +A +V + WD
Sbjct: 139 EREIKLWNILGECKFSSAEKE---NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 124 LKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQ 181
LK W+ + Q R + V LS+ N +AT G + + ++D+ N++ P+
Sbjct: 196 LKVWN---TNFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ- 249
Query: 182 RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH--RKSEAG 239
RE + P A+ + +G ++ F+L S+A + K+E
Sbjct: 250 -REFDAGSTINQIAFNPKLQWVAVGTDQG---VKIFNLMTQSKAPVCTIEAEPITKAEGQ 305
Query: 240 RDIVYPVNAIAFHPIYGTFATGGCDGFV 267
+ ++A++ + G DG +
Sbjct: 306 KGKNPQCTSLAWNALGKKLFAGFTDGVI 333
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 30/201 (14%)
Query: 116 ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDL 173
I+ SWDK+L+ WD R + +R VG VYS++ + + +AG R + ++++
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKR-FVG---HQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Query: 174 RNMSQPEQRRESSLKYQTRCVR----------CYPNGTGYALSSVEGRVAMEFFDLSEAS 223
+ + + CVR P +A +GR+ + +
Sbjct: 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--- 204
Query: 224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK 283
+Y FK H + VN ++ P ATGG D + +WD N +
Sbjct: 205 --IRYTFKAHESN---------VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD 253
Query: 284 YPTSIAALSFSRDGRLLAVAS 304
++I ++F+ + +AV +
Sbjct: 254 AGSTINQIAFNPKLQWVAVGT 274
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 226 KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP 285
+KYA HR PV + FHP++ + D + VWD +
Sbjct: 100 EKYALSGHRS---------PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 150
Query: 286 TSIAALSFSRDGRLLAVASS 305
S+ +SF G+LLA S+
Sbjct: 151 DSVQDISFDHSGKLLASCSA 170
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 34 LLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK 92
LL S DK+++++D S + + H V FH + AD R+ K
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 93 E--DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130
L H+ V +++ A V+TGS D+++K W+ R
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 19/191 (9%)
Query: 116 ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLVVATAGRHVNVYDL 173
++GSWD +L+ WD + R VG + V S++ + ++V + + + +++
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRR-FVG---HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157
Query: 174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 233
+ + + ES ++ CVR PN + + S ++ ++L+ C
Sbjct: 158 LGVCKYTVQDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN----------CK 206
Query: 234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF 293
K+ Y +N + P A+GG DG +WD N K LY I AL F
Sbjct: 207 LKTNHIGHTGY-LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCF 264
Query: 294 SRDGRLLAVAS 304
S + L A+
Sbjct: 265 SPNRYWLCAAT 275
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-SASA 79
+S++ S+ L SWD ++RL+D + F+ H VL F D+ S S
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 80 DHTVRRL----VFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWD 128
D T++ V + +D H V C+ +S + +++ WDK +K W+
Sbjct: 149 DKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 19/199 (9%)
Query: 116 ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLVVATAGRHVNVYDL 173
++GSWD +L+ WD + R VG + V S++ + ++V + + + +++
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRR-FVG---HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134
Query: 174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 233
+ + + ES ++ CVR PN + + S ++ ++L+ C
Sbjct: 135 LGVCKYTVQDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN----------CK 183
Query: 234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF 293
K+ Y +N + P A+GG DG +WD N K LY I AL F
Sbjct: 184 LKTNHIGHTGY-LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCF 241
Query: 294 SRDGRLLAVASSYTFEEGD 312
S + L A+ + + D
Sbjct: 242 SPNRYWLCAATGPSIKIWD 260
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-SASA 79
+S++ S+ L SWD ++RL+D + F+ H VL F D+ S S
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 80 DHTVRRL----VFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWD 128
D T++ V + +D H V C+ +S + +++ WDK +K W+
Sbjct: 126 DKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 29 NHSDHLLVSSWDKSVRLYDASANVLRGEFM--------HGGPVLDCCFH-DDSSGFSASA 79
N S HLL +S D ++ L+D SA G+ + H V D +H S F + A
Sbjct: 188 NLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVA 247
Query: 80 DHTVRRLVFSHGKEDILGK-------HDAPVRCIEYS-YAAGQVITGSWDKSLKCWDPRG 131
D ++L+ + + K H A V C+ ++ Y+ + TGS DK++ WD R
Sbjct: 248 DD--QKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305
Query: 132 ASGQERTLVGTYPQPERVYSLSLV-GNRLVVATAG--RHVNVYDLRNMSQPEQRRESS 186
+ + + ++ + N ++A++G R +NV+DL + + EQ E +
Sbjct: 306 LKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE-EQSPEDA 359
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 246 VNAIAFHPIYGTF--ATGGCDGFVNVWDGNN-KKRLYQYSKYPTSIAALSFSRDGRLLAV 302
VN ++F+P Y F ATG D V +WD N K +L+ + + I + +S +
Sbjct: 276 VNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 334
Query: 303 AS 304
+S
Sbjct: 335 SS 336
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSRDGRLL 300
+NAI F P FATG D ++D + L YS I ++SFS+ GRLL
Sbjct: 240 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 79/218 (36%), Gaps = 26/218 (11%)
Query: 96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV 155
L H + C + Q++T S D + WD T V SLSL
Sbjct: 150 LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD----VMSLSLA 204
Query: 156 -GNRLVVATA-GRHVNVYDLRN--MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR 211
RL V+ A ++D+R Q ES + + +PNG +A S +
Sbjct: 205 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA----ICFFPNGNAFATGSDDA- 259
Query: 212 VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF-VNVW 270
FDL + Y+ +I+ + +++F G G D F NVW
Sbjct: 260 -TCRLFDLRADQELMTYSHD---------NIICGITSVSFSK-SGRLLLAGYDDFNCNVW 308
Query: 271 DGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF 308
D R + + ++ L + DG +A S +F
Sbjct: 309 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 346
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
+L HD V C+ + V TGSWD LK W+
Sbjct: 318 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSRDGRLL 300
+NAI F P FATG D ++D + L YS I ++SFS+ GRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 79/218 (36%), Gaps = 26/218 (11%)
Query: 96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV 155
L H + C + Q++T S D + WD T V SLSL
Sbjct: 139 LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD----VMSLSLA 193
Query: 156 -GNRLVVATA-GRHVNVYDLRN--MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR 211
RL V+ A ++D+R Q ES + + +PNG +A S +
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA----ICFFPNGNAFATGSDDA- 248
Query: 212 VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF-VNVW 270
FDL + Y+ +I+ + +++F G G D F NVW
Sbjct: 249 -TCRLFDLRADQELMTYSHD---------NIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297
Query: 271 DGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF 308
D R + + ++ L + DG +A S +F
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
+L HD V C+ + V TGSWD LK W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSRDGRLL 300
+NAI F P FATG D ++D + L YS I ++SFS+ GRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 79/218 (36%), Gaps = 26/218 (11%)
Query: 96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV 155
L H + C + Q++T S D + WD T V SLSL
Sbjct: 139 LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD----VMSLSLA 193
Query: 156 -GNRLVVATA-GRHVNVYDLRN--MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR 211
RL V+ A ++D+R Q ES + + +PNG +A S +
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA----ICFFPNGNAFATGSDDA- 248
Query: 212 VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF-VNVW 270
FDL + Y+ +I+ + +++F G G D F NVW
Sbjct: 249 -TCRLFDLRADQELMTYSHD---------NIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297
Query: 271 DGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF 308
D R + + ++ L + DG +A S +F
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
+L HD V C+ + V TGSWD LK W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSRDGRLL 300
+NAI F P FATG D ++D + L YS I ++SFS+ GRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 79/218 (36%), Gaps = 26/218 (11%)
Query: 96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV 155
L H + C + Q++T S D + WD T V SLSL
Sbjct: 139 LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD----VMSLSLA 193
Query: 156 -GNRLVVATA-GRHVNVYDLRN--MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR 211
RL V+ A ++D+R Q ES + + +PNG +A S +
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA----ICFFPNGNAFATGSDDA- 248
Query: 212 VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF-VNVW 270
FDL + Y+ +I+ + +++F G G D F NVW
Sbjct: 249 -TCRLFDLRADQELMTYSHD---------NIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297
Query: 271 DGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF 308
D R + + ++ L + DG +A S +F
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
+L HD V C+ + V TGSWD LK W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSRDGRLL 300
+NAI F P FATG D ++D + L YS I ++SFS+ GRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 79/218 (36%), Gaps = 26/218 (11%)
Query: 96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV 155
L H + C + Q++T S D + WD T V SLSL
Sbjct: 139 LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD----VMSLSLA 193
Query: 156 -GNRLVVATA-GRHVNVYDLRN--MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR 211
RL V+ A ++D+R Q ES + + +PNG +A S +
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA----ICFFPNGNAFATGSDDA- 248
Query: 212 VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF-VNVW 270
FDL + Y+ +I+ + +++F G G D F NVW
Sbjct: 249 -TCRLFDLRADQELMTYSHD---------NIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297
Query: 271 DGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF 308
D R + + ++ L + DG +A S +F
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
+L HD V C+ + V TGSWD LK W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 59 HGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAAGQV 115
H V DC D + SAS D T+R + G+ + +G H + V ++ A +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMI 122
Query: 116 ITGSWDKSLKCWDPRG 131
I+GS DK++K W +G
Sbjct: 123 ISGSRDKTIKVWTIKG 138
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 59 HGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAAGQV 115
H V DC D + SAS D T+R + G+ + +G H + V ++ A +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMI 122
Query: 116 ITGSWDKSLKCWDPRG 131
I+GS DK++K W +G
Sbjct: 123 ISGSRDKTIKVWTIKG 138
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 59 HGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAAGQV 115
H V DC D + SAS D T+R + G+ + +G H + V ++ A +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMI 122
Query: 116 ITGSWDKSLKCWDPRG 131
I+GS DK++K W +G
Sbjct: 123 ISGSRDKTIKVWTIKG 138
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 59 HGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAAGQV 115
H V DC D + SAS D T+R + G+ + +G H + V ++ A +
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMI 116
Query: 116 ITGSWDKSLKCWDPRG 131
I+GS DK++K W +G
Sbjct: 117 ISGSRDKTIKVWTIKG 132
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 59 HGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAAGQV 115
H V DC D + SAS D T+R + G+ + +G H + V ++ A +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMI 122
Query: 116 ITGSWDKSLKCWDPRG 131
I+GS DK++K W +G
Sbjct: 123 ISGSRDKTIKVWTIKG 138
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 34 LLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGFSA-SADHTVRRLVFSHG 91
LL S+D +V++++ + +F H G VL C D++ FS+ SAD T + F
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF--- 1121
Query: 92 KEDILGK------HDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
D+L H+ VRC +S + TG + ++ W+
Sbjct: 1122 --DLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Query: 59 HGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGKEDI-LGKHDAPVRCIEYSYAAGQVI 116
H V CF D S AD T++ G++ + + H+ V C +S +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 117 TGSWDKSLKCWDPRGASGQERTLVGTYPQ-PERVYSLSLVG--NRLVVATAGRHVNVYDL 173
T S DK +K WD A+G+ LV TY + E+V N L++AT G + L
Sbjct: 681 TCSADKKVKIWD--SATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLAT-GSNDFFLKL 734
Query: 174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK 231
+++Q E R + + C + L+S + +D+ A++ K K
Sbjct: 735 WDLNQKECRN-TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 258 FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
ATG D F+ +WD N K+ + S+ FS D LLA S+
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 770
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Query: 27 FSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG---FSASADHTV 83
FS+ ++ S DK V+++D++ L + ++CC + S + ++
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 84 RRLVFSHGKE--DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-----E 136
+L + KE + + H V +S + + S D +L+ WD R A+ + +
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Query: 137 RTLVGTYPQPERVY------SLSLVGNRLVVATAGRHVNVYDL 173
R + + PE V S S G++++VA A V ++D+
Sbjct: 792 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-AKNKVLLFDI 833
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 34 LLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGFSA-SADHTVRRLVFSHG 91
LL S+D +V++++ + +F H G VL C D++ FS+ SAD T + F
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF--- 1114
Query: 92 KEDILGK------HDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
D+L H+ VRC +S + TG + ++ W+
Sbjct: 1115 --DLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Query: 59 HGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGKEDI-LGKHDAPVRCIEYSYAAGQVI 116
H V CF D S AD T++ G++ + + H+ V C +S +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 117 TGSWDKSLKCWDPRGASGQERTLVGTYPQ-PERVYSLSLVG--NRLVVATAGRHVNVYDL 173
T S DK +K WD A+G+ LV TY + E+V N L++AT G + L
Sbjct: 674 TCSADKKVKIWD--SATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLAT-GSNDFFLKL 727
Query: 174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK 231
+++Q E R + + C + L+S + +D+ A++ K K
Sbjct: 728 WDLNQKECRN-TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 258 FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
ATG D F+ +WD N K+ + S+ FS D LLA S+
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Query: 27 FSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG---FSASADHTV 83
FS+ ++ S DK V+++D++ L + ++CC + S + ++
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 84 RRLVFSHGKE--DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-----E 136
+L + KE + + H V +S + + S D +L+ WD R A+ + +
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Query: 137 RTLVGTYPQPERVY------SLSLVGNRLVVATAGRHVNVYDL 173
R + + PE V S S G++++VA A V ++D+
Sbjct: 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-AKNKVLLFDI 826
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 59 HGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAAGQV 115
H V DC D + SAS D T+R + G+ + +G H + V ++ A +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVXSVDIDKKASXI 122
Query: 116 ITGSWDKSLKCWDPRG 131
I+GS DK++K W +G
Sbjct: 123 ISGSRDKTIKVWTIKG 138
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 246 VNAIAFHPI-YGTFATGGCDGFVNVWDGNNKKRLYQYSK--YPTSIAALSFSRDGRLLAV 302
V +A+HP + GCD + VWD + +P +I ++ +SRDG L+
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193
Query: 303 A------------SSYTFEEGDKPHE 316
+ E D+PHE
Sbjct: 194 SCRDKRVRVIEPRKGTVVAEKDRPHE 219
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 21/211 (9%)
Query: 91 GKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVY 150
K+ + H + ++ + Q++T S D + WD SGQ L + V
Sbjct: 145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE--SGQ--LLQSFHGHGADVL 200
Query: 151 SLSL----VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS 206
L L GN V + V+D+R+ Q Q E+ + VR YP+G +A
Sbjct: 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETH-ESDVNSVRYYPSGDAFASG 258
Query: 207 SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF 266
S + +DL + Y+ I++ +++ F G D
Sbjct: 259 SDDATC--RLYDLRADREVAIYS---------KESIIFGASSVDFSLSGRLLFAGYNDYT 307
Query: 267 VNVWDGNNKKRLYQYSKYPTSIAALSFSRDG 297
+NVWD R+ + ++ L S DG
Sbjct: 308 INVWDVLKGSRVSILFGHENRVSTLRVSPDG 338
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALS--FSRDGRLL 300
VN++ ++P FA+G D ++D + + YSK A S FS GRLL
Sbjct: 243 VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGFSA- 77
+ + + R +S LL S+D +V++++ +F+ H G VL C D++ FS+
Sbjct: 1051 ETVKDFRLLKNS-RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSST 1109
Query: 78 SADHTVRRLVFSHGKEDIL------GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
SAD T + F D+L H+ VRC +S + + TG + ++ W+
Sbjct: 1110 SADKTAKIWSF-----DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 258 FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
ATG D F+ +WD N K+ + S+ FS D +LLA S+
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSA 769
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 15/203 (7%)
Query: 34 LLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGK 92
+L W + + S V+R H V CF +D S AD T++ G+
Sbjct: 598 MLYLEWINKKNITNLSRLVVRP---HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGE 654
Query: 93 EDI-LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ-PERVY 150
+ + + H+ V C +S + T S DK +K W+ +G+ LV TY + E+V
Sbjct: 655 KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN--SMTGE---LVHTYDEHSEQVN 709
Query: 151 SLSLVG--NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV 208
+ L++AT G L +++Q E R + + C + L+S
Sbjct: 710 CCHFTNSSHHLLLAT-GSSDCFLKLWDLNQKECRN-TMFGHTNSVNHCRFSPDDKLLASC 767
Query: 209 EGRVAMEFFDLSEASQAKKYAFK 231
++ +D + A++ K K
Sbjct: 768 SADGTLKLWDATSANERKSINVK 790
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 66 CCFHDDSSGFSASADHTVRRLVFSHGKED---ILGKHDAPVRCIEYSYAAGQVITGSWDK 122
C +DD S D+T++ ++ + IL H V C++Y +ITGS D
Sbjct: 138 CLQYDDQKIVSGLRDNTIK--IWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDS 193
Query: 123 SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQR 182
+++ WD TL+ E V L +V + R + V+D+ + + R
Sbjct: 194 TVRVWDV-NTGEMLNTLIH---HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 249
Query: 183 R 183
R
Sbjct: 250 R 250
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 12/158 (7%)
Query: 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASA---NVLRGEFMHGGPVLDCCFHDDSSGFS 76
+ + +LRF+N ++ S D+S+ ++D ++ LR + ++ DD S
Sbjct: 214 EAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 271
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
AS D T++ S + L H + C++Y V++GS D +++ WD +
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACL 329
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL 173
R L G E V + R+V + V+DL
Sbjct: 330 -RVLEG---HEELVRCIRFDNKRIVSGAYDGKIKVWDL 363
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF 216
NR+V R+ V+ L+ + + RCVR PN +A+ S +++ +
Sbjct: 65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 124
Query: 217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD 264
F+ Q + H K + I V ++ +HP A G CD
Sbjct: 125 FE-----QENDWWVCKHIK----KPIRSTVLSLDWHPNSVLLAAGSCD 163
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF 216
NR+V R+ V+ L+ + + RCVR PN +A+ S +++ +
Sbjct: 65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 124
Query: 217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD 264
F+ Q + H K + I V ++ +HP A G CD
Sbjct: 125 FE-----QENDWWVCKHIK----KPIRSTVLSLDWHPNSVLLAAGSCD 163
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 79/214 (36%), Gaps = 29/214 (13%)
Query: 76 SASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVIT-GSWDKSLKCWDPRGASG 134
S S D TVR G+ + + V + S G+ I GS D++++ WD
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 135 QER----TLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK 188
ER GT + VYS+ G +V + R V +++L+N + + +S
Sbjct: 242 VERLDSENESGT-GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN---KSDSKTP 297
Query: 189 YQTRCVRCY------------PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS 236
C Y Y LS + R + F+D + S + HR S
Sbjct: 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL-FWD--KKSGNPLLMLQGHRNS 354
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW 270
V N + P Y FATG D +W
Sbjct: 355 VIS---VAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 219 LSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRL 278
LS+ S A K + S D+ + ++ F P ATG D + +WD N+K +
Sbjct: 101 LSDDSAANKDPENLNTSSSPSSDLY--IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 158
Query: 279 YQYSKYPTSIAALSFSRDGRLLAVAS 304
+ I +L + G L S
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGS 184
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 67 CFHDDSSGFSASADHTVRRLVFSHGKED--ILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
CF D + A+ + R+ ++ IL H+ + ++Y + ++++GS D+++
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 125 KCWDPR 130
+ WD R
Sbjct: 190 RIWDLR 195
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 80 DHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCW 127
D + +V + G + H+ + C+ S + TGSWDK+LK W
Sbjct: 326 DTLLAEMVLNLGT--LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTS-------IAALSFSRDGR 298
+N++ F P F TG DG ++D +L Y++ P + +++FS GR
Sbjct: 252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR 311
Query: 299 LL 300
LL
Sbjct: 312 LL 313
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 49/243 (20%)
Query: 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY-----PQPE 147
ED++ HDA + Y ++ T S D+S+K +D R + L+ P +
Sbjct: 13 EDMI--HDA-----QMDYYGTRLATCSSDRSVKIFDVRNGG---QILIADLRGHEGPVWQ 62
Query: 148 RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS- 206
++ + GN L + R V ++ N + + + V P+ G L+
Sbjct: 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC 122
Query: 207 -SVEGRVAMEFFDLSEASQAKK----YAFKCHRKSEA-----GRDIVYPVNAIAFHPIY- 255
S +G +++ + + KK + C+ S A G I +P P Y
Sbjct: 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ---KPNYI 179
Query: 256 GTFATGGCDGFVNVW----DGNNK--KRLYQYSKY------------PTSIAALSFSRDG 297
FA+GGCD + +W DG K ++L +S + PTS A S S+DG
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA-SCSQDG 238
Query: 298 RLL 300
R+
Sbjct: 239 RVF 241
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 32/181 (17%)
Query: 29 NHSDHLLVSSWDKSVRLYDASA-----------NVLRGEFMHGGPVLDCCFHD-DSSGFS 76
N + +LL +S D ++ L+D +A N+ G H V D +H S F
Sbjct: 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG---HTAVVEDVAWHLLHESLFG 248
Query: 77 ASADHTVRRLVFSHGKEDILGK-------HDAPVRCIEYS-YAAGQVITGSWDKSLKCWD 128
+ AD ++L+ + + K H A V C+ ++ Y+ + TGS DK++ WD
Sbjct: 249 SVADD--QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 129 PRGASGQERTLVGTYPQPERVYSLSLV-GNRLVVATAG--RHVNVYDLRNMSQPEQRRES 185
R + + + ++ + N ++A++G R ++V+DL + + EQ E
Sbjct: 307 LRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE-EQSTED 362
Query: 186 S 186
+
Sbjct: 363 A 363
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 246 VNAIAFHPIYGTF--ATGGCDGFVNVWDGNN-KKRLYQYSKYPTSIAALSFSRDGRLLAV 302
VN ++F+P Y F ATG D V +WD N K +L+ + + I + +S +
Sbjct: 280 VNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338
Query: 303 AS 304
+S
Sbjct: 339 SS 340
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 32/181 (17%)
Query: 29 NHSDHLLVSSWDKSVRLYDASA-----------NVLRGEFMHGGPVLDCCFHD-DSSGFS 76
N + +LL +S D ++ L+D +A N+ G H V D +H S F
Sbjct: 194 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG---HTAVVEDVAWHLLHESLFG 250
Query: 77 ASADHTVRRLVFSHGKEDILGK-------HDAPVRCIEYS-YAAGQVITGSWDKSLKCWD 128
+ AD ++L+ + + K H A V C+ ++ Y+ + TGS DK++ WD
Sbjct: 251 SVADD--QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 129 PRGASGQERTLVGTYPQPERVYSLSLV-GNRLVVATAG--RHVNVYDLRNMSQPEQRRES 185
R + + + ++ + N ++A++G R ++V+DL + + EQ E
Sbjct: 309 LRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE-EQSTED 364
Query: 186 S 186
+
Sbjct: 365 A 365
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 246 VNAIAFHPIYGTF--ATGGCDGFVNVWDGNN-KKRLYQYSKYPTSIAALSFSRDGRLLAV 302
VN ++F+P Y F ATG D V +WD N K +L+ + + I + +S +
Sbjct: 282 VNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 340
Query: 303 AS 304
+S
Sbjct: 341 SS 342
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 53 LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGK---HDAPVRCIEYS 109
LRG H V+ C +D+ + + D +R V+ + L + HD V ++Y+
Sbjct: 117 LRG---HMTSVITCLQFEDNYVITGADDKMIR--VYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 110 YAAGQVITGSWDKSLKCWDPR 130
+ G +++GS D++++ WD +
Sbjct: 172 HG-GILVSGSTDRTVRVWDIK 191
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 260 TGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGD 312
TG D + V+D NKK L Q S + + AL ++ G L++ ++ T D
Sbjct: 137 TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 189
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 32/181 (17%)
Query: 29 NHSDHLLVSSWDKSVRLYDASA-----------NVLRGEFMHGGPVLDCCFHD-DSSGFS 76
N + +LL +S D ++ L+D +A N+ G H V D +H S F
Sbjct: 196 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG---HTAVVEDVAWHLLHESLFG 252
Query: 77 ASADHTVRRLVFSHGKEDILGK-------HDAPVRCIEYS-YAAGQVITGSWDKSLKCWD 128
+ AD ++L+ + + K H A V C+ ++ Y+ + TGS DK++ WD
Sbjct: 253 SVADD--QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 129 PRGASGQERTLVGTYPQPERVYSLSLV-GNRLVVATAG--RHVNVYDLRNMSQPEQRRES 185
R + L + ++ + N ++A++G R ++V+DL + + EQ E
Sbjct: 311 LRNL---KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE-EQSTED 366
Query: 186 S 186
+
Sbjct: 367 A 367
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 246 VNAIAFHPIYGTF--ATGGCDGFVNVWDGNN-KKRLYQYSKYPTSIAALSFSRDGRLLAV 302
VN ++F+P Y F ATG D V +WD N K +L+ + + I + +S +
Sbjct: 284 VNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 342
Query: 303 AS 304
+S
Sbjct: 343 SS 344
>pdb|3QFK|A Chain A, 2.05 Angstrom Crystal Structure Of Putative
5'-Nucleotidase From Staphylococcus Aureus In Complex
With Alpha-Ketoglutarate
Length = 527
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 62/178 (34%), Gaps = 35/178 (19%)
Query: 44 RLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK----------- 92
R YD S + G+F+ G P C + SG S R F G
Sbjct: 60 RQYDQSFKIDNGDFLQGSPF--CNYLIAHSGSSQPLVDFYNRXAFDFGTLGNHEFNYGLP 117
Query: 93 --EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR-GASGQERTLVGTYPQPERV 149
+D L + + PV C Y +T + K + D G G + + QPE +
Sbjct: 118 YLKDTLRRLNYPVLCANI-YENDSTLTDNGVKYFQVGDQTVGVIGLTTQFIPHWEQPEHI 176
Query: 150 YSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS 207
SL+ H + +++ PE +R + + V CY G L S
Sbjct: 177 QSLTF------------H-SAFEILQQYLPEXKRHADI-----IVVCYHGGFEKDLES 216
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 53 LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGK---HDAPVRCIEYS 109
LRG H V+ C +D+ + + D +R V+ + L + HD V ++Y+
Sbjct: 117 LRG---HXTSVITCLQFEDNYVITGADDKXIR--VYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 110 YAAGQVITGSWDKSLKCWDPR 130
+ G +++GS D++++ WD +
Sbjct: 172 HG-GILVSGSTDRTVRVWDIK 191
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 86 LVFSHGKED-----ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV 140
LVF +E+ +L H A VR + S V++GS+D +L WD Q + L
Sbjct: 251 LVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDV----AQXKCLY 304
Query: 141 GTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRN 175
+R+YS R + A+ + ++DL N
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 260 TGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGD 312
TG D + V+D NKK L Q S + + AL ++ G L++ ++ T D
Sbjct: 137 TGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 189
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/213 (17%), Positives = 82/213 (38%), Gaps = 20/213 (9%)
Query: 97 GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG 156
GK V C+ +S+ ++TG + L+ W+ GA + R +S+
Sbjct: 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA-------LLNVLNFHRAPIVSVKW 157
Query: 157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR--VAM 214
N+ G H+ D+ N++ ++ + S +G V +
Sbjct: 158 NK-----DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDV 212
Query: 215 EFFD----LSEASQAKKYAFKCHRKSEAGRDIVY--PVNAIAFHPIYGTFATGGCDGFVN 268
E+ D + + + ++ K+ G+ I + P++ + F+ + DG +
Sbjct: 213 EWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272
Query: 269 VWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA 301
+W G N + + SI + S+ D ++++
Sbjct: 273 IWHGGNGNSQNCFYGHSQSIVSASWVGDDKVIS 305
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 32/169 (18%)
Query: 110 YAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRH 167
+++G V+ + D S+ W +SG L+ E + S++ + GN L V T+
Sbjct: 33 WSSGNVLAVALDNSVYLWS--ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 90
Query: 168 VNVYD------LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSE 221
V ++D LRNM+ R SL + + Y LSS + D+
Sbjct: 91 VQLWDVQQQKRLRNMTS-HSARVGSLSWNS-----------YILSSGSRSGHIHHHDVRV 138
Query: 222 ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW 270
A H + +G V + + P A+GG D VNVW
Sbjct: 139 AEH--------HVATLSGHS--QEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 32/169 (18%)
Query: 110 YAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRH 167
+++G V+ + D S+ W +SG L+ E + S++ + GN L V T+
Sbjct: 124 WSSGNVLAVALDNSVYLWS--ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 181
Query: 168 VNVYD------LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSE 221
V ++D LRNM+ R SL + + Y LSS + D+
Sbjct: 182 VQLWDVQQQKRLRNMTS-HSARVGSLSWNS-----------YILSSGSRSGHIHHHDVRV 229
Query: 222 ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW 270
A H + +G V + + P A+GG D VNVW
Sbjct: 230 AEH--------HVATLSGHS--QEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 32/169 (18%)
Query: 110 YAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRH 167
+++G V+ + D S+ W +SG L+ E + S++ + GN L V T+
Sbjct: 113 WSSGNVLAVALDNSVYLWS--ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170
Query: 168 VNVYD------LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSE 221
V ++D LRNM+ R SL + + Y LSS + D+
Sbjct: 171 VQLWDVQQQKRLRNMTS-HSARVGSLSWNS-----------YILSSGSRSGHIHHHDVRV 218
Query: 222 ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW 270
A H + +G V + + P A+GG D VNVW
Sbjct: 219 AEH--------HVATLSGHS--QEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 112 AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN------RLVVATAG 165
A +++TGS D ++K WDPR + + +R GN R+V A
Sbjct: 129 APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD 188
Query: 166 R-HVNVYDLRNMSQPEQRRESSLK 188
+ ++DLRNM+ R E+++K
Sbjct: 189 NGDIKLFDLRNMA---LRWETNIK 209
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 243 VYPVNAIAFHPIYG--TFATGGCDGFVNVW 270
VY +N + + + G ATGG DG VN W
Sbjct: 295 VYEINVVKWLELNGKTILATGGDDGIVNFW 324
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 11/162 (6%)
Query: 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR--GEFMHGGPVLDCCFHDDSSG 74
P S S + SN + V D V +Y S + +H + F ++ +
Sbjct: 446 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA- 504
Query: 75 FSASADHTVRRLVFSHGKEDILGK------HDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
F + D + + + +S L H A V C+ +S ++ TGS D S+ W+
Sbjct: 505 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
Query: 129 PRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV 170
S + G + + L N + +AG+ N+
Sbjct: 565 MNKPSDHPIIIKGAHAMSSVNSVIWL--NETTIVSAGQDSNI 604
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 109 SYAAGQVITGSWDKSLKCWDPRGASGQERTLV-GTYPQPERVYSLSLVG---NRLVVATA 164
S+ G VI+GSWDK+ K W +E +LV V+ +V N+ + A+A
Sbjct: 111 SFQDGVVISGSWDKTAKVW-------KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163
Query: 165 GRHVNVY 171
+ + ++
Sbjct: 164 DKTIKLW 170
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 195 RCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS-EAGRDIVYPVNAIAFHP 253
R P G S E + DLS+ +Q +++ ++S +AG DIVY A ++ P
Sbjct: 117 RATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLP 176
Query: 254 I 254
+
Sbjct: 177 L 177
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 195 RCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS-EAGRDIVYPVNAIAFHP 253
R P G S E + DLS+ +Q +++ ++S +AG DIVY A ++ P
Sbjct: 117 RATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLP 176
Query: 254 I 254
+
Sbjct: 177 L 177
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 260 TGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPD 318
TGG D V WD ++L Q+ + + I +L + G LAV + E ++PD
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,581,978
Number of Sequences: 62578
Number of extensions: 439204
Number of successful extensions: 1262
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 859
Number of HSP's gapped (non-prelim): 307
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)