BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019384
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WVA3|BUB3_MOUSE Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2
Length = 326
Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/322 (55%), Positives = 229/322 (71%), Gaps = 6/322 (1%)
Query: 13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
+L PP DGIS+++FS N S LLVSSWD SVRLYD AN +R ++ H G VLDC F+D
Sbjct: 8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67
Query: 72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
+ +S DH ++ + +E+++G HDAP+RC+EY ++TGSWD+++K WDPR
Sbjct: 68 THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 127
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM +QRRESSLKYQT
Sbjct: 128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182
Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
RC+R +PN GY LSS+EGRVA+E+ D S Q KKYAFKCHR E + +YPVNAI+F
Sbjct: 183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242
Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
H I+ TFATGG DGFVN+WD NKKRL Q+ +YPTSIA+L+FS DG LA+ASSY +E
Sbjct: 243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302
Query: 312 DKPHEPDAIFVRSVNEIEVKPK 333
D H D IF+R V + E KPK
Sbjct: 303 DTEHPEDGIFIRQVTDAETKPK 324
>sp|Q1JQB2|BUB3_BOVIN Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1
Length = 326
Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/322 (55%), Positives = 229/322 (71%), Gaps = 6/322 (1%)
Query: 13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
+L PP DGIS+++FS N S LLVSSWD SVRLYD AN +R ++ H G VLDC F+D
Sbjct: 8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67
Query: 72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
+ +S DH ++ + +E+++G HDAP+RC+EY ++TGSWD+++K WDPR
Sbjct: 68 THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 127
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM +QRRESSLKYQT
Sbjct: 128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182
Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
RC+R +PN GY LSS+EGRVA+E+ D S Q KKYAFKCHR E + +YPVNAI+F
Sbjct: 183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242
Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
H I+ TFATGG DGFVN+WD NKKRL Q+ +YPTSIA+L+FS DG LA+ASSY +E
Sbjct: 243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302
Query: 312 DKPHEPDAIFVRSVNEIEVKPK 333
D H D IF+R V + E KPK
Sbjct: 303 DTEHPEDGIFIRQVTDAETKPK 324
>sp|O43684|BUB3_HUMAN Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1
Length = 328
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/322 (55%), Positives = 229/322 (71%), Gaps = 6/322 (1%)
Query: 13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
+L PP DGIS+++FS N S LLVSSWD SVRLYD AN +R ++ H G VLDC F+D
Sbjct: 8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67
Query: 72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
+ +S DH ++ + +E+++G HDAP+RC+EY ++TGSWD+++K WDPR
Sbjct: 68 THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 127
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM +QRRESSLKYQT
Sbjct: 128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182
Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
RC+R +PN GY LSS+EGRVA+E+ D S Q KKYAFKCHR E + +YPVNAI+F
Sbjct: 183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242
Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
H I+ TFATGG DGFVN+WD NKKRL Q+ +YPTSIA+L+FS DG LA+ASSY +E
Sbjct: 243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302
Query: 312 DKPHEPDAIFVRSVNEIEVKPK 333
D H D IF+R V + E KPK
Sbjct: 303 DTEHPEDGIFIRQVTDAETKPK 324
>sp|Q5RB58|BUB3_PONAB Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1
Length = 328
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/322 (55%), Positives = 227/322 (70%), Gaps = 6/322 (1%)
Query: 13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
+L PP DGIS+++FS N S LLVSSWD SVRLYD AN +R ++ H G VLDC F+D
Sbjct: 8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67
Query: 72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
+ +S DH ++ + +E+++G HDAP+RC+EY + TGSWD+++K WDPR
Sbjct: 68 THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMATGSWDQTVKLWDPRT 127
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM +QRRESSLKYQT
Sbjct: 128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182
Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
RC+R + N GY LSS+EGRVA+E+ D S Q KKYAFKCHR E + +YPVNAI+F
Sbjct: 183 RCIRAFLNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242
Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
H I+ TFATGG DGFVN+WD NKKRL Q+ +YPTSIA+L+FS DG LA+ASSY +E
Sbjct: 243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302
Query: 312 DKPHEPDAIFVRSVNEIEVKPK 333
D H D IF+R V + E KPK
Sbjct: 303 DTEHPEDGIFIRQVTDAETKPK 324
>sp|Q9YGY3|BUB3_XENLA Mitotic checkpoint protein BUB3 OS=Xenopus laevis GN=bub3 PE=1 SV=1
Length = 330
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/322 (54%), Positives = 227/322 (70%), Gaps = 6/322 (1%)
Query: 13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
+L P DGIS ++FS N S LLVSSWD SVRLYD AN +R ++ H GPVLDC F+D
Sbjct: 14 KLNQAPEDGISAVKFSPNTSQFLLVSSWDSSVRLYDVPANTMRLKYQHAGPVLDCAFYDP 73
Query: 72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
+ +S DH ++ + + ++G HDAP+RC+EY ++TGSWD+++K WDPR
Sbjct: 74 THAWSGGLDHQLKMHDLNTDGDTVVGSHDAPIRCVEYCPEVNVIVTGSWDQTVKLWDPRT 133
Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
GT+ QP++VY+LS+ G+RL+V TAGR V V+DLRNM +QRRESSLKYQT
Sbjct: 134 PCN-----AGTFSQPDKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 188
Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
RC+R +PN GY LSS+EGRVA+E+ D S Q KKYAFKCHR E + +YPVNA++F
Sbjct: 189 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKENNIEQIYPVNAVSF 248
Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
H ++ TFATGG DGFVN+WD NKKRL Q+ +YPTSIA+L+FS DG LA+A+SY +E
Sbjct: 249 HNLHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGSTLAIAASYMYEMD 308
Query: 312 DKPHEPDAIFVRSVNEIEVKPK 333
D H DAI++R V + E KPK
Sbjct: 309 DIDHPEDAIYIRQVTDAETKPK 330
>sp|Q54DM1|BUB3_DICDI Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum GN=bub3
PE=3 SV=1
Length = 331
Score = 327 bits (839), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 161/329 (48%), Positives = 223/329 (67%), Gaps = 7/329 (2%)
Query: 7 PPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDC 66
P +S EL PPSDGIS++ F +S +LLV+SWD +VR YD NV + ++ H GPV+D
Sbjct: 5 PTSSFYELRLPPSDGISSVNFCPNSVNLLVTSWDSTVRCYDTQNNVQKWQYNHKGPVMDG 64
Query: 67 CFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKC 126
CF + + FS +V+ G E +G H+ VR + Y+ Q+ TG WD+ LK
Sbjct: 65 CFPEKNKVFSGDVFGSVKHYDPVAGVEKEVGSHEDGVRSVVYNSDTQQLFTGGWDQQLKL 124
Query: 127 WDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRE 184
WD R ++ + + +++++ + + N LV+ TA ++V +YD R M Q+RE
Sbjct: 125 WDIRS----DKMEISNHDLQSKIFTMDVSPISNMLVIGTADKYVTIYDTRQMETHLQKRE 180
Query: 185 SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVY 244
SS+KYQTRC+R + +G GYAL+SVEGR+AME+FD S A Q+KKYAFKCHR +E+G D+VY
Sbjct: 181 SSIKYQTRCIRTFTDGKGYALASVEGRIAMEYFDPSPAVQSKKYAFKCHRLTESGVDVVY 240
Query: 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
PVN IAF+P YGTFATGGCD V WDG N+KRL+ YPTSI+++SF+ DG +LAVAS
Sbjct: 241 PVNCIAFNPHYGTFATGGCDKNVFFWDGANRKRLHALKTYPTSISSMSFNTDGNILAVAS 300
Query: 305 SYTFEEGDKPHEPDAIFVRSV-NEIEVKP 332
SYTFEEG+K H PD IF+ ++ +E +KP
Sbjct: 301 SYTFEEGEKDHPPDQIFIHNILSEKIIKP 329
>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rae1 PE=1 SV=1
Length = 352
Score = 224 bits (571), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 185/333 (55%), Gaps = 17/333 (5%)
Query: 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA---NVLRGEFMHGGPVLDCCFH 69
E+ PP D IS+L FS +++L SSWD VR+Y+ A ++ + + H GPVL +
Sbjct: 24 EVAQPPEDSISDLAFSPQAEYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWS 83
Query: 70 DDSSGF-SASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ---VITGSWDKSLK 125
D + S S D + + G+ + HD VRC+ + A G + TGSWDK+LK
Sbjct: 84 RDGTKVASGSVDKSAKVFDIQTGQNQQVAAHDDAVRCVRFVEAMGTSPILATGSWDKTLK 143
Query: 126 CWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES 185
WD R + T + T PERVY++ V L VATA R++ V +L ++ + S
Sbjct: 144 YWDLR-----QSTPIATVSLPERVYAMDCVHPLLTVATAERNICVINLSEPTKIFKLAMS 198
Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP 245
LK+QTR + C+ G GYA+ SVEGR A++ D ASQ ++F+CHR VY
Sbjct: 199 PLKFQTRSLACFIKGDGYAIGSVEGRCAIQNIDEKNASQ--NFSFRCHRNQAGNSADVYS 256
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
VN+IAFHP YGTF+T G DG + WD ++ +RL Y +I+ +F+R G + A A S
Sbjct: 257 VNSIAFHPQYGTFSTAGSDGTFSFWDKDSHQRLKSYPNVGGTISCSTFNRTGDIFAYAIS 316
Query: 306 YTFEEG---DKPHEPDAIFVRSVNEIEVKPKPK 335
Y + +G + P+ I + V + E+KP+PK
Sbjct: 317 YDWSKGYTFNNAQLPNKIMLHPVPQDEIKPRPK 349
>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GLE2 PE=1 SV=1
Length = 365
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 186/341 (54%), Gaps = 26/341 (7%)
Query: 14 LGNPPSDGISNLRFSNHSDHLL-VSSWDKSVRLYDASANVLRGEFMH--GGPVLDCCFHD 70
+ +P D IS++ FS D + SSWD VR++D V +G H PVL + +
Sbjct: 31 INSPAEDSISDIAFSPQQDFMFSASSWDGKVRIWDVQNGVPQGRAQHESSSPVLCTRWSN 90
Query: 71 DSSGF-SASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ----VITGSWDKSLK 125
D + S D+ ++ + G+ +G H AP++ + + ++TGSWDK++K
Sbjct: 91 DGTKVASGGCDNALKLYDIASGQTQQIGMHSAPIKVLRFVQCGPSNTECIVTGSWDKTIK 150
Query: 126 CWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES 185
WD R + V T PERVYS+ + LVVATA RH+ + +L N + + S
Sbjct: 151 YWDMR-----QPQPVSTVMMPERVYSMDNKQSLLVVATAERHIAIINLANPTTIFKATTS 205
Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK-YAFKCHRKSEA------ 238
LK+QTRCV CY GYA+ SVEGR ++ + D + Q K ++FKCHR++
Sbjct: 206 PLKWQTRCVACYNEADGYAIGSVEGRCSIRYID--DGMQKKSGFSFKCHRQTNPNRAPGS 263
Query: 239 -GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG 297
G+ +VYPVN+IAFHP+YGTF T G DG N WD N + RL Y SI SF+R+G
Sbjct: 264 NGQSLVYPVNSIAFHPLYGTFVTAGGDGTFNFWDKNQRHRLKGYPTLQASIPVCSFNRNG 323
Query: 298 RLLAVASSYTFEE---GDKPHEPDAIFVRSVNEIEVKPKPK 335
+ A A SY + + G++P P+ I + + + EVK K K
Sbjct: 324 SVFAYALSYDWHQGHMGNRPDYPNVIRLHATTDEEVKEKKK 364
>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670
PE=2 SV=2
Length = 349
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 188/340 (55%), Gaps = 23/340 (6%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDAS------ANVLRGEFMHGG 61
P E+ P+D IS+L FS +D L+ +SWD VR ++ S A+ + H
Sbjct: 14 PNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKASISHDQ 73
Query: 62 PVLDCCFHDD-SSGFSASADHTVRRL-VFSHGKEDILGKHDAPVRCIEYSYAAGQVITGS 119
PVL + DD ++ FS D + + S G+ + H+ P+ + + + TGS
Sbjct: 74 PVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGS 133
Query: 120 WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP 179
WDK+LK WD R ++ V T P++ Y+LS+ +VV TA R++ V++L+N
Sbjct: 134 WDKTLKYWDTR-----QQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQTE 188
Query: 180 EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG 239
+R +S LKYQTRCV +P+ G+ + S+EGRV + D S+ Q+K + FKCHR G
Sbjct: 189 FKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLDDSQ--QSKNFTFKCHRD---G 243
Query: 240 RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRL 299
DI Y VN++ FHP++GTFAT G DG N WD ++K+RL S+ I SF+ DG +
Sbjct: 244 NDI-YSVNSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDGSI 302
Query: 300 LAVASSYTFEEGDKPHEP----DAIFVRSVNEIEVKPKPK 335
A A+ Y + +G + H P +IF+ E EVK KP+
Sbjct: 303 YAYAACYDWSKGAENHNPATAKSSIFLHLPQESEVKAKPR 342
>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1
Length = 368
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 191/348 (54%), Gaps = 28/348 (8%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLYDASAN---VLRGEFMHGG 61
P E+ +PP D IS L FS + + L+ SW VR ++ N + + + MH G
Sbjct: 28 PMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWANDVRCWEVQDNGQTIPKAQQMHTG 87
Query: 62 PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
PVLD C+ DD S F+AS D T + + + + +HDAP++ + + A ++TG
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQSIQIAQHDAPIKTVHWVKAPNYSCIMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
SWDKSLK WD R + + T PER Y +V VVATA R + VY L N
Sbjct: 148 SWDKSLKFWDTRSPNP-----LLTLQLPERCYCADVVYPMAVVATAERGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+R +S LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR
Sbjct: 203 EFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
+ A +DI Y VN IAFHP++GT AT G DG + WD + + +L + I+A
Sbjct: 262 SNGTNTTAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320
Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNEIEVKPKPK 335
SF+ +G + A +SSY + +G + P + + IF+R+ E E+KP+ K
Sbjct: 321 CSFNHNGNIFAYSSSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRNK 367
>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1
Length = 368
Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 189/348 (54%), Gaps = 28/348 (8%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGG 61
P E+ + P D I L FS + + L+ SW VR + D+ + + + MH G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 62 PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
PVLD C+ DD S F+AS D T + S + + +HDAPV+ I + A V+TG
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
SWDK+LK WD R ++ + PER Y ++ VVATAGR + VY L N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQL-----PERYYCADVIYPMAVVATAGRGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR
Sbjct: 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
+ A +DI Y VN IAFHP++GT AT G DG + WD + + +L + I+A
Sbjct: 262 SNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320
Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNEIEVKPKPK 335
F+ +G + A ASSY + +G + P + + IF+R+ E E+KP+ K
Sbjct: 321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRNK 367
>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1
Length = 368
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 188/348 (54%), Gaps = 28/348 (8%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGG 61
P E+ + P D I L FS + + L+ SW VR + D+ + + + MH G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 62 PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
PVLD C+ DD S F+AS D T + + + + +HDAPV+ I + A V+TG
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
SWDK+LK WD R ++ + PER Y ++ VVATA R + VY L N
Sbjct: 148 SWDKTLKFWDTRSSNP-----MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR
Sbjct: 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
+ A +DI Y VN IAFHP++GT AT G DG + WD + + +L + IAA
Sbjct: 262 SNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPIAA 320
Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNEIEVKPKPK 335
F+ +G + A ASSY + +G + P + + IF+R+ E E+KP+ K
Sbjct: 321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRNK 367
>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1
Length = 368
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 188/348 (54%), Gaps = 28/348 (8%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGG 61
P E+ + P D I L FS + + L+ SW VR + D+ + + + MH G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 62 PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
PVLD C+ DD S F+AS D T + S + + +HDAPV+ I + A V+TG
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
SWDK+LK WD R ++ + PER Y ++ VVATA R + VY L N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQL-----PERCYCADVIYPMAVVATAERGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR
Sbjct: 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
+ A +DI Y VN IAFHP++GT AT G DG + WD + + +L + I+A
Sbjct: 262 SNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320
Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNEIEVKPKPK 335
F+ +G + A ASSY + +G + P + + IF+R+ E E+KP+ K
Sbjct: 321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRNK 367
>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1
Length = 368
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 188/348 (54%), Gaps = 28/348 (8%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGG 61
P E+ + P D I L FS + + L+ SW VR + D+ + + + MH G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 62 PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
PVLD C+ DD S F+AS D T + S + + +HDAPV+ I + A V+TG
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
SWDK+LK WD R ++ + PER Y ++ VVATA R + VY L N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQL-----PERCYCADVIYPMAVVATAERGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR
Sbjct: 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
+ A +DI Y VN IAFHP++GT AT G DG + WD + + +L + I+A
Sbjct: 262 SNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320
Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNEIEVKPKPK 335
F+ +G + A ASSY + +G + P + + IF+R+ E E+KP+ K
Sbjct: 321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRNK 367
>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2
Length = 368
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 187/347 (53%), Gaps = 26/347 (7%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLYDASAN---VLRGEFMHGG 61
P E+ +PP D IS L FS + + L+ SW VR ++ N V + + MH G
Sbjct: 28 PMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQMHTG 87
Query: 62 PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
PVLD C+ DD S F+AS D T + + + + +H+ P+R I + A ++TG
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHEGPIRTIHWIKAPNYSCIMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
SWDK+LK WD R + + + PER Y +V VVATA R + VY L N
Sbjct: 148 SWDKTLKFWDTRSPNP-----MMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR
Sbjct: 203 EFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 KS---EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAAL 291
+ A +Y VNAI+FHP++GT AT G DG + WD + + +L + I A
Sbjct: 262 SNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPITAC 321
Query: 292 SFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNEIEVKPKPK 335
F+ +G + A ASSY + +G + P + + IF+R+ E E+KP+ K
Sbjct: 322 CFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE-ELKPRNK 367
>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1
Length = 368
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 188/348 (54%), Gaps = 28/348 (8%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGG 61
P E+ + P D I L FS + + L+ SW VR + D+ + + + MH G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 62 PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
PVLD C+ DD S F+AS D T + + + + +HDAPV+ I + A V+TG
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
SWDK+LK WD R ++ + PER Y ++ VVATA R + VY L N
Sbjct: 148 SWDKTLKFWDTRSSNP-----MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR
Sbjct: 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
+ A +DI Y VN IAFHP++GT AT G DG + WD + + +L + +AA
Sbjct: 262 SNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPVAA 320
Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNEIEVKPKPK 335
F+ +G + A ASSY + +G + P + + IF+R+ E E+KP+ K
Sbjct: 321 CGFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRNK 367
>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1
Length = 368
Score = 198 bits (503), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 188/348 (54%), Gaps = 28/348 (8%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGG 61
P E+ + P D I L FS + + L+ SW VR + D+ + + + MH G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 62 PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
PVLD C+ DD S F+AS D T + + + + +HDAPV+ I + A V+TG
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
SWDK+LK WD R ++ + PER Y ++ VVATA R + VY L N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQL-----PERCYCADVIYPMAVVATAERGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR
Sbjct: 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
+ A +DI Y VN IAFHP++GT AT G DG + WD + + +L + I+A
Sbjct: 262 SNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320
Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNEIEVKPKPK 335
F+ +G + A ASSY + +G + P + + IF+R+ E E+KP+ K
Sbjct: 321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRNK 367
>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1
Length = 368
Score = 198 bits (503), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 126/348 (36%), Positives = 188/348 (54%), Gaps = 28/348 (8%)
Query: 8 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGG 61
P E+ + P D I L FS + + L+ SW VR + D+ + + + MH G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 62 PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
PVLD C+ DD S F+AS D T + + + + +HDAPV+ + + A V+TG
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTVHWIKAPNYSCVMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
SWDK+LK WD R ++ + PER Y ++ VVATA R + VY L N
Sbjct: 148 SWDKTLKFWDTRSSNP-----MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR
Sbjct: 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
+ A +DI Y VN IAFHP++GT AT G DG + WD + + +L + I+A
Sbjct: 262 SNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320
Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNEIEVKPKPK 335
F+ +G + A ASSY + +G + P + + IF+R+ E E+KP+ K
Sbjct: 321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRNK 367
>sp|O42860|BUB3_SCHPO Mitotic checkpoint protein bub3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=bub3 PE=1 SV=1
Length = 320
Score = 195 bits (496), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 162/295 (54%), Gaps = 7/295 (2%)
Query: 12 RELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFH 69
+ L DGIS++ FS + + L+ WD S+ Y S N L G++ P+L +
Sbjct: 5 KTLLKNSKDGISSVIFSPSVKNELIAGCWDGSLLHYQISENPELLGKYDLSSPILSLEYT 64
Query: 70 DDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDP 129
D+ + + D TV L + + LG H V CI I+GSWDKS + WD
Sbjct: 65 DEKTALVGNLDGTVTTLDLNTRNHEFLGNHGKGVSCISKLRLENCFISGSWDKSFRVWDV 124
Query: 130 RGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKY 189
R E +G +++++ S N LV+ + R VYD+RN+ P QRR SS KY
Sbjct: 125 RVKQPVEGQDIG-----KKIFASSSRDNILVLGCSERENLVYDIRNLKLPFQRRPSSFKY 179
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249
TR V C N G+ SS+EGR ++E+ + S+ +Q+K + FKCHR+ + DIVYPVN +
Sbjct: 180 MTRSVCCNQNFEGFVSSSIEGRTSVEYINPSQEAQSKNFTFKCHRQIQKDYDIVYPVNDL 239
Query: 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
FHPI+ T AT G DG V WD +KRL + +I+++SF+ DG +LA+A+
Sbjct: 240 KFHPIHQTLATAGGDGVVAFWDIQVRKRLRVLNPSKINISSISFNVDGSMLAIAT 294
>sp|Q93454|NPP17_CAEEL Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17 PE=1 SV=1
Length = 373
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/334 (31%), Positives = 166/334 (49%), Gaps = 21/334 (6%)
Query: 18 PSDGISNLRFS---NHSDHLLVSSWDKSVRLYDAS-ANVLRGEFMHG--GPVLDCCFHDD 71
P D I ++FS L SWD ++R++ + AN G+ P+LD + +D
Sbjct: 41 PEDTIQVIKFSPTPQDKPMLACGSWDGTIRVWMFNDANTFEGKAQQNIPAPILDIAWIED 100
Query: 72 SSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWD 128
SS F A AD R + + ++G HD PV+ + ++TGS+DK+L+ WD
Sbjct: 101 SSKIFIACADKEARLWDLASNQVAVVGTHDGPVKTCHWINGNNYQCLMTGSFDKTLRFWD 160
Query: 129 PRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK 188
+ Q T + PERVY+ ++ VVA A +H+ VY+L N + ES LK
Sbjct: 161 MKNLPNQ--TQMAQIQLPERVYAADVLYPMAVVALANKHIKVYNLENGPTEVKDIESQLK 218
Query: 189 YQTRCVRCYP-----NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA--GRD 241
+Q RC+ + N G+AL S+EGRVA+++ D+ A+ + FKCHR +E G
Sbjct: 219 FQIRCISIFKDKSNQNPAGFALGSIEGRVAVQYVDV--ANPKDNFTFKCHRSAELVNGFQ 276
Query: 242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA 301
+Y VN I FHP +GT T G DG ++WD + + +L +P + G L
Sbjct: 277 EIYAVNDICFHPQHGTLVTIGSDGRYSMWDKDARTKLKTSEPHPMPLTCCDVHSSGAFLV 336
Query: 302 VASSYTFEEGDKPH-EPDAIFVRSVNEIEVKPKP 334
A Y + G + + +P + V ++KP+P
Sbjct: 337 YALGYDWSRGHEGNTQPGSKIVIHKCIEDMKPRP 370
>sp|P26449|BUB3_YEAST Cell cycle arrest protein BUB3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUB3 PE=1 SV=1
Length = 341
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 141/313 (45%), Gaps = 16/313 (5%)
Query: 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLY--DASA-NV-LRGEFMHGGPVLDCCF 68
++ P D IS+++ LL++SWD S+ +Y D A NV L + P+L C F
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 69 HD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
D D + + + + L+ S + + C Y ++I SWD +
Sbjct: 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 125 KCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
+ DPR G + +++++ +RL+V V + L
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184
Query: 181 -QRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKS 236
ES LKYQ R V P GYA SS++GRVA+EFFD + + +K++AF+CHR +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296
++ YPVN+I F P + T G DG ++ W+ +K++ ++K+ D
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 297 GRLLAVASSYTFE 309
L S TF+
Sbjct: 305 NILCLATSDDTFK 317
>sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1
SV=1
Length = 476
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 24/286 (8%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-SAS 78
I++ FS + + +SWD + L+ + ++ H V F + SAS
Sbjct: 20 AITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASAS 79
Query: 79 ADHTVRRLVFSH-GKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQER 137
D TVR V GK H APVR +++S ++T S DKS+K W + ++R
Sbjct: 80 RDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVW----SMFRQR 135
Query: 138 TLVGTYPQPE--RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVR 195
L Y R S G +V + + + ++D N Q S+ + V
Sbjct: 136 FLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN-KQCVNNFSDSVGF-ANFVD 193
Query: 196 CYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY 255
PNGT ++S A++ +D+ + Y G VN ++FHP+
Sbjct: 194 FNPNGT--CIASAGSDHAVKIWDIRMNKLLQHYQVH-----SCG------VNCLSFHPLG 240
Query: 256 GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA 301
+ T DG V + D + +Y + + +SFS+DG LL
Sbjct: 241 NSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLT 286
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
+ + F P AT D F+ +W R Y+Y + + +L FS G LLA AS
Sbjct: 21 ITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASAS 79
>sp|Q75AV4|PFS2_ASHGO Polyadenylation factor subunit 2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PSF2
PE=3 SV=1
Length = 449
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 119/260 (45%), Gaps = 26/260 (10%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCF-HDDSSGFSAS 78
++ +++S+ D L+ D +++++ + N+++ + H + D F + D + S
Sbjct: 123 AVTVMQYSHAGDWLISGDADGTIKIWQPNFNMVKVLDRAHTECMRDISFSYSDQKFVTCS 182
Query: 79 ADHTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS---- 133
D+ ++ FS+G+++ +L H V+ ++ G +++GS D +K WDPR
Sbjct: 183 DDNVLKIWNFSNGQQERVLSGHHWDVKSCDWHPKMGLIVSGSKDNLIKLWDPRTGRNVST 242
Query: 134 --GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
G + T++ T QP + GN L V + + + +YD+R + Q + Y +
Sbjct: 243 ILGLKHTVIKTKFQPTQ-------GNLLAVVSKDKSIKIYDMRQHMRELQTIRDDMDYMS 295
Query: 192 RCVRCYP-NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250
+ +P N T +++ G A++ FDL + A CH A V ++A
Sbjct: 296 --LSWHPINETIFSVGCYNG--AIKHFDLLHDNSNSTPA--CHTIPYAHEK---SVTSLA 346
Query: 251 FHPIYGTFATGGCDGFVNVW 270
+ P+ A+ D + W
Sbjct: 347 YSPVGHILASAAKDRTIRFW 366
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 48/269 (17%)
Query: 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL 152
E I+ HD+ V ++YS+A +I+G D ++K W P + L + + R S
Sbjct: 114 ESIMQAHDSAVTVMQYSHAGDWLISGDADGTIKIWQPN--FNMVKVLDRAHTECMRDISF 171
Query: 153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKY-------------------QTRC 193
S + V + NV + N S +Q R S + +
Sbjct: 172 SYSDQKFVTCSDD---NVLKIWNFSNGQQERVLSGHHWDVKSCDWHPKMGLIVSGSKDNL 228
Query: 194 VRCYPNGTGYALSSVEG---RVAMEFFD---------LSEASQAKKYAFKCH-RKSEAGR 240
++ + TG +S++ G V F +S+ K Y + H R+ + R
Sbjct: 229 IKLWDPRTGRNVSTILGLKHTVIKTKFQPTQGNLLAVVSKDKSIKIYDMRQHMRELQTIR 288
Query: 241 DIVYPVNAIAFHPIYGTFATGGC-----DGFVNVWDGNNKKRLYQYSKYP--TSIAALSF 293
D + ++++HPI T + GC F + D +N Y S+ +L++
Sbjct: 289 DDM-DYMSLSWHPINETIFSVGCYNGAIKHFDLLHDNSNSTPACHTIPYAHEKSVTSLAY 347
Query: 294 SRDGRLLAVAS---SYTFEEGDKPHEPDA 319
S G +LA A+ + F +P +P+A
Sbjct: 348 SPVGHILASAAKDRTIRFWARSRPVDPNA 376
>sp|Q6CP71|PFS2_KLULA Polyadenylation factor subunit 2 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=PFS2 PE=3 SV=1
Length = 452
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 120/260 (46%), Gaps = 27/260 (10%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSGF-SAS 78
++ + +S+ D ++ S D ++++ + N+++ + H V + F F S S
Sbjct: 125 AVTVMTYSHTGDWMVSGSADGELKIWQPNFNMVKVMDQAHMECVREISFSPTDQKFVSCS 184
Query: 79 ADHTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS---- 133
D+ ++ FS+G+++ +L H V+ ++ G +++GS D +K WDPR S
Sbjct: 185 DDNVLKIWNFSNGQQERVLSGHHWDVKSCDWHPKMGLIVSGSKDNLIKFWDPRSGSCVST 244
Query: 134 --GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
G + T++ T QP++ GN L V + + VYD+R ++ + Y T
Sbjct: 245 MLGFKHTIISTKFQPKQ-------GNLLSVISKDKTCKVYDIRQQAKELFSVRDDVDYMT 297
Query: 192 RCVRCYP-NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250
++ +P + T + + +G +++ FDLS+ +Q K E V ++A
Sbjct: 298 --LQWHPIDETVFTVGCYDG--SIKHFDLSQENQPNKPTHNIPYAHEKC------VTSLA 347
Query: 251 FHPIYGTFATGGCDGFVNVW 270
+ PI A+ D + W
Sbjct: 348 YSPIGHIMASASKDRTIRFW 367
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL 152
E I+ HD+ V + YS+ +++GS D LK W P + + + + R S
Sbjct: 116 ESIMQAHDSAVTVMTYSHTGDWMVSGSADGELKIWQPN--FNMVKVMDQAHMECVREISF 173
Query: 153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRR 183
S + V + NV + N S +Q R
Sbjct: 174 SPTDQKFVSCSDD---NVLKIWNFSNGQQER 201
>sp|Q6FJS0|PFS2_CANGA Polyadenylation factor subunit 2 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=PFS2 PE=3 SV=1
Length = 455
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 126/266 (47%), Gaps = 43/266 (16%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFSASAD 80
++ +++S+ D ++ D +++++ + N+++ + +H + D F ++ S F +D
Sbjct: 127 VTTMKYSHAGDWMISGDADGTIKIWQPNFNMVKELDRIHTEGIRDVAFSNNDSKFVTCSD 186
Query: 81 HTVRRLV-FSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ--- 135
+ ++ FS+G+++ +L H VR ++ G +++GS D +K WDPR SGQ
Sbjct: 187 DNILKIWNFSNGQQERVLSGHHWDVRSCDWHPELGLIVSGSKDNLVKLWDPR--SGQCVS 244
Query: 136 -----ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR-NMSQPEQRRES---- 185
+ T++ T QP + GN L + + V+DLR +M++ R+
Sbjct: 245 TLLKFKHTVLKTRFQPTK-------GNLLAAISKDKSCRVFDLRASMNELMCVRDEVDFM 297
Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK-CHRKSEAGRDIVY 244
L++ T N + + + +G +++ FDL + ++ + H K
Sbjct: 298 ELEWSTI------NESMFTVGCYDG--SLKHFDLGQDTEKPIHIIPFAHEKC-------- 341
Query: 245 PVNAIAFHPIYGTFATGGCDGFVNVW 270
++AIA++P+ AT D + W
Sbjct: 342 -ISAIAYNPVGHILATAAKDRTIRFW 366
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL 152
E I+ HD V ++YS+A +I+G D ++K W P +E + T E + +
Sbjct: 117 ETIMQAHDTSVTTMKYSHAGDWMISGDADGTIKIWQPNFNMVKELDRIHT----EGIRDV 172
Query: 153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRR 183
+ N T N+ + N S +Q R
Sbjct: 173 AFSNNDSKFVTCSDD-NILKIWNFSNGQQER 202
>sp|Q8JZX3|POC1A_MOUSE POC1 centriolar protein homolog A OS=Mus musculus GN=Poc1a PE=2
SV=2
Length = 405
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 83/208 (39%), Gaps = 19/208 (9%)
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158
H V C+ +S + + +GS DK+++ W P E T+ + R G
Sbjct: 60 HKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKG--ESTVFRAHTATVRSVHFCSDGQS 117
Query: 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD 218
LV A+ + V V+ S QR SL VRC A S +GR+ + D
Sbjct: 118 LVTASDDKTVKVW-----STHRQRFLFSLTQHINWVRC-------AKFSPDGRLIVSASD 165
Query: 219 LSEASQAKKYAFKC-HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR 277
K + +C H E G + Y + FHP A G D V VWD +
Sbjct: 166 DKTVKLWDKTSRECIHSYCEHGGFVTY----VDFHPSGTCIAAAGMDNTVKVWDARTHRL 221
Query: 278 LYQYSKYPTSIAALSFSRDGRLLAVASS 305
L Y + ++ ALSF G L ASS
Sbjct: 222 LQHYQLHSAAVNALSFHPSGNYLITASS 249
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 112/296 (37%), Gaps = 34/296 (11%)
Query: 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF--SA 77
D ++ + FS ++ HL S D ++ ++ F + C S S
Sbjct: 20 DAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASG 79
Query: 78 SADHTVRRLVFS-HGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE 136
S D TVR V + G+ + H A VR + + ++T S DK++K W ++ ++
Sbjct: 80 SRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVW----STHRQ 135
Query: 137 RTLVGTYPQPE--RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQ---- 190
R L R S G +V A+ + V ++D + RE Y
Sbjct: 136 RFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-------KTSRECIHSYCEHGG 188
Query: 191 -TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249
V +P+GT A + ++ V K + + HR + + VNA+
Sbjct: 189 FVTYVDFHPSGTCIAAAGMDNTV-------------KVWDARTHRLLQHYQLHSAAVNAL 235
Query: 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
+FHP T D + + D + LY + ++FSR G A S
Sbjct: 236 SFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 107/277 (38%), Gaps = 60/277 (21%)
Query: 20 DGISNLRFSNHSDHLLVS-SWDKSVRLY----DASANVLRGEFMHGGPVLDCCF-HDDSS 73
D ++ + FS S HLL S S DK+VR++ + V R H V F D S
Sbjct: 62 DAVTCVNFSP-SGHLLASGSRDKTVRIWVPNVKGESTVFRA---HTATVRSVHFCSDGQS 117
Query: 74 GFSASADHTVR-------RLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKC 126
+AS D TV+ R +FS L +H VRC ++S +++ S DK++K
Sbjct: 118 LVTASDDKTVKVWSTHRQRFLFS------LTQHINWVRCAKFSPDGRLIVSASDDKTVKL 171
Query: 127 WDPRGAS--------GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN--M 176
WD G T V +P G + A V V+D R +
Sbjct: 172 WDKTSRECIHSYCEHGGFVTYVDFHPS----------GTCIAAAGMDNTVKVWDARTHRL 221
Query: 177 SQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS 236
Q Q +++ + +P+G +S + ++ DL E Y H+
Sbjct: 222 LQHYQLHSAAVN----ALSFHPSGNYLITASSDS--TLKILDLMEGRLL--YTLHGHQG- 272
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273
P +AF FA+GG D V VW N
Sbjct: 273 --------PATTVAFSRTGEYFASGGSDEQVMVWKSN 301
>sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b
PE=2 SV=1
Length = 477
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 24/286 (8%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-SAS 78
I++ FS + + +SWD + L+ + ++ H V F + SAS
Sbjct: 20 AITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASAS 79
Query: 79 ADHTVRRLVFSH-GKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQER 137
D TVR V GK H APVR +++S ++T S DKS+K W + ++R
Sbjct: 80 RDKTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQFLVTASEDKSIKVW----SMYRQR 135
Query: 138 TLVGTYPQPE--RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVR 195
L Y R S G +V + + + ++D + Q S+ + V
Sbjct: 136 FLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTS-KQCVNNFSDSVGF-ANFVD 193
Query: 196 CYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY 255
PNGT ++S A+ +D+ + Y G VN ++FHP
Sbjct: 194 FSPNGT--CIASAGSDHAVRIWDIRMNRLLQHYQVH-----SCG------VNCLSFHPSG 240
Query: 256 GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA 301
+ T DG V + D + +Y + + +SFS+DG L
Sbjct: 241 NSLVTASSDGTVKILDLVEGRLIYTLQGHTGPVFTVSFSKDGELFT 286
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 82/209 (39%), Gaps = 21/209 (10%)
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCW--DPRGASGQERTLVGTYPQPERVYSLSLVG 156
H V +++S + + S DK+++ W D +G S + + + P R S G
Sbjct: 59 HKDVVTSLQFSPQGNLLASASRDKTVRLWVLDRKGKSSEFKA----HTAPVRSVDFSADG 114
Query: 157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF 216
LV A+ + + V+ S QR SL T VRC A S +GR+ +
Sbjct: 115 QFLVTASEDKSIKVW-----SMYRQRFLYSLYRHTHWVRC-------AKFSPDGRLIVS- 161
Query: 217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK 276
SE K + + D V N + F P A+ G D V +WD +
Sbjct: 162 --CSEDKTIKIWDTTSKQCVNNFSDSVGFANFVDFSPNGTCIASAGSDHAVRIWDIRMNR 219
Query: 277 RLYQYSKYPTSIAALSFSRDGRLLAVASS 305
L Y + + LSF G L ASS
Sbjct: 220 LLQHYQVHSCGVNCLSFHPSGNSLVTASS 248
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
+ + F P AT D F+ +W R Y+Y + + +L FS G LLA AS
Sbjct: 21 ITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASAS 79
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora
curvata GN=pkwA PE=3 SV=1
Length = 742
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 23/256 (8%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-S 76
+D + + FS L S D +VRL+D +A R F H VLD F D S S
Sbjct: 501 TDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSMVAS 560
Query: 77 ASADHTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
S D T R + G E +L H V + +S V +GS D +++ WD A+G+
Sbjct: 561 GSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWD--VATGK 618
Query: 136 ERTLVGTYPQPERVYSLSLVGN-RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCV 194
ER ++ E V SL+ + ++V + V+++D+ + + E + R V
Sbjct: 619 ERDVLQA--PAENVVSLAFSPDGSMLVHGSDSTVHLWDVAS-GEALHTFEGHTDW-VRAV 674
Query: 195 RCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI 254
P+G L+S + +D+ A+Q + + H + PV+++AFHP
Sbjct: 675 AFSPDGA--LLASGSDDRTIRLWDV--AAQEEHTTLEGHTE---------PVHSVAFHPE 721
Query: 255 YGTFATGGCDGFVNVW 270
T A+ DG + +W
Sbjct: 722 GTTLASASEDGTIRIW 737
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 32/216 (14%)
Query: 96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV 155
L H VR + +S + +GS D +++ WD A+ +ER + + V ++
Sbjct: 497 LEGHTDWVRAVAFSPDGALLASGSDDATVRLWD--VAAAEERAVFEGHTH--YVLDIAFS 552
Query: 156 GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTR---CVRCYPNGTGYALSSVEGRV 212
+ +VA+ R L N++ + + LK T V P+G+ A S +G +
Sbjct: 553 PDGSMVASGSRD-GTARLWNVATGTEH--AVLKGHTDYVYAVAFSPDGSMVASGSRDGTI 609
Query: 213 AMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP----VNAIAFHPIYGTFATGGCDGFVN 268
+D++ + RD++ V ++AF P G+ G D V+
Sbjct: 610 --RLWDVATGKE---------------RDVLQAPAENVVSLAFSP-DGSMLVHGSDSTVH 651
Query: 269 VWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
+WD + + L+ + + + A++FS DG LLA S
Sbjct: 652 LWDVASGEALHTFEGHTDWVRAVAFSPDGALLASGS 687
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 76/194 (39%), Gaps = 21/194 (10%)
Query: 121 DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
DK + WD ASG E + + R + S G L + V ++D+ + E
Sbjct: 480 DKLIHVWD--VASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDV---AAAE 534
Query: 181 QRR--ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA 238
+R E Y + P+G+ A S +G + + A+ + K H
Sbjct: 535 ERAVFEGHTHY-VLDIAFSPDGSMVASGSRDGTARL----WNVATGTEHAVLKGHT---- 585
Query: 239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR 298
D VY A+AF P A+G DG + +WD K ++ +L+FS DG
Sbjct: 586 --DYVY---AVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGS 640
Query: 299 LLAVASSYTFEEGD 312
+L S T D
Sbjct: 641 MLVHGSDSTVHLWD 654
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
A+AF P A G D ++VWD + L+ + + A++FS DG LLA S
Sbjct: 464 AVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGS 520
>sp|Q59WJ4|PFS2_CANAL Polyadenylation factor subunit 2 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=PFS2 PE=3 SV=1
Length = 543
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 112/272 (41%), Gaps = 31/272 (11%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSSGFSASAD 80
I +++SNH + LL + +V+ + + N + H V D F +DS + D
Sbjct: 180 ILTMKYSNHDEWLLSGDQNGTVKYWQPNFNNVNNISAHANGVRDIAFSPNDSKFLTCGDD 239
Query: 81 HTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS------ 133
++ F++GKE+ L H V+ ++ G +++GS D +K WDPR A+
Sbjct: 240 SAIKIWNFNNGKEERTLSGHHWEVKSADWHPNLGLIVSGSKDNLVKLWDPRSANCVSTLH 299
Query: 134 GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRC 193
G + T+ T QP L L + R ++DLR M R+S C
Sbjct: 300 GFKHTVNKTRFQPNGTARL------LASVSRDRSCRIFDLRTMKDMLVIRDSETDLS--C 351
Query: 194 VRCYP-NGTGYALSSVEGRVAMEFFDL----SEASQAKKYAFKCHRKS------EAGRDI 242
V +P + + ++ G ++ D S S K+ + + +A + I
Sbjct: 352 VAWHPIHASMVTTAAYNGSISNFLLDSYIPDSNESVPKRSNNNSNLSTNTNNTIDAVQKI 411
Query: 243 VY----PVNAIAFHPIYGTFATGGCDGFVNVW 270
Y ++A+ +HP+ T G D W
Sbjct: 412 PYAHEKAIHAVEYHPLGHLLCTAGSDKTARFW 443
>sp|Q2TBP4|POC1A_BOVIN POC1 centriolar protein homolog A OS=Bos taurus GN=POC1A PE=2 SV=1
Length = 407
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 82/208 (39%), Gaps = 19/208 (9%)
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158
H V C+ +S + + +GS DK+++ W P E T+ + R G
Sbjct: 60 HKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKG--ESTVFRAHTATVRSVHFCSDGQS 117
Query: 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD 218
V A+ + V V+ S Q+ SL VRC A S +GR+ + D
Sbjct: 118 FVTASDDKTVKVW-----STHRQKFLFSLSQHINWVRC-------AKFSPDGRLIVSASD 165
Query: 219 LSEASQAKKYAFKC-HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR 277
K + +C H E G + Y + FHP A G D V VWD +
Sbjct: 166 DKTVKLWDKTSRECVHSYCEHGGFVTY----VDFHPSGTCIAAAGMDNTVKVWDVRTHRL 221
Query: 278 LYQYSKYPTSIAALSFSRDGRLLAVASS 305
L Y + ++ ALSF G L ASS
Sbjct: 222 LQHYQLHSAAVNALSFHPSGNYLVTASS 249
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 107/271 (39%), Gaps = 48/271 (17%)
Query: 20 DGISNLRFSNHSDHLLVS-SWDKSVRLY----DASANVLRGEFMHGGPVLDCCFHDDSSG 74
D ++ + FS S HLL S S DK+VR++ + V R H V F D
Sbjct: 62 DAVTCVNFSP-SGHLLASGSRDKTVRIWVPNVKGESTVFRA---HTATVRSVHFCSDGQS 117
Query: 75 FSASADHTVRRLVFSHGKEDI--LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132
F ++D ++ +H ++ + L +H VRC ++S +++ S DK++K WD
Sbjct: 118 FVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSR 177
Query: 133 S--------GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN--MSQPEQR 182
G T V +P G + A V V+D+R + Q Q
Sbjct: 178 ECVHSYCEHGGFVTYVDFHPS----------GTCIAAAGMDNTVKVWDVRTHRLLQHYQL 227
Query: 183 RESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI 242
+++ + +P+G +S + ++ DL E Y H+
Sbjct: 228 HSAAVN----ALSFHPSGNYLVTASSDS--TLKILDLMEGRLL--YTLHGHQG------- 272
Query: 243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273
P +AF FA+GG D V VW N
Sbjct: 273 --PATTVAFSRTGEYFASGGSDEQVMVWKSN 301
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 112/296 (37%), Gaps = 34/296 (11%)
Query: 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF--SA 77
D ++++ FS ++ L S D + ++ F + C S S
Sbjct: 20 DAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHLLASG 79
Query: 78 SADHTVRRLVFS-HGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE 136
S D TVR V + G+ + H A VR + + +T S DK++K W ++ ++
Sbjct: 80 SRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVW----STHRQ 135
Query: 137 RTL--VGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQ---- 190
+ L + + R S G +V A+ + V ++D + RE Y
Sbjct: 136 KFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-------KTSRECVHSYCEHGG 188
Query: 191 -TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249
V +P+GT A + ++ V K + + HR + + VNA+
Sbjct: 189 FVTYVDFHPSGTCIAAAGMDNTV-------------KVWDVRTHRLLQHYQLHSAAVNAL 235
Query: 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
+FHP T D + + D + LY + ++FSR G A S
Sbjct: 236 SFHPSGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 230 FKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA 289
FK HR + V ++ F A+G D + VW + R Y+++ + ++
Sbjct: 15 FKGHRDA---------VTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVT 65
Query: 290 ALSFSRDGRLLAVAS 304
++FS G LLA S
Sbjct: 66 CVNFSPSGHLLASGS 80
>sp|Q9W7F2|WDR1A_XENLA WD repeat-containing protein 1-A OS=Xenopus laevis GN=wdr1-a PE=2
SV=2
Length = 607
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 127/297 (42%), Gaps = 35/297 (11%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLD----CCFHDDSSGFS 76
GI + +S LL +S DK+ +++D +AN F G VLD C + D S
Sbjct: 236 GIYAVSWSPDGTQLLSASGDKTTKIWDVAANSAVTTFNLGSDVLDQQLGCLWQKDYL-LS 294
Query: 77 ASADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGA 132
S + L ++ ++ H+ ++C+ + + G+ + TGS D + WD
Sbjct: 295 VSLSGYINYLDKNNPARPLRVIKGHNKSIQCMTVNNSDGRSTIYTGSHDGHINYWDAE-- 352
Query: 133 SGQERTLVGTYPQPERVYSLSLVG-NRLVVATAGRHVNVYDLRNMSQPEQRRES-SLKYQ 190
+G+ T G +V S+ L G N+L+ + + L +S+ ES + Q
Sbjct: 353 TGENDTFTGK-GHTNQVSSMDLDGCNQLITCSMDDTLRYTSL--ISKDYSSSESVKMDVQ 409
Query: 191 TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250
+CV GY ++ G++ + K +K A + Y A+A
Sbjct: 410 PKCVAV--GSGGYVVTVCIGQIVL---------------LKDKKKVFAIDSLDYEPEAVA 452
Query: 251 FHPIYGTFATGGCDGFVNVW--DGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
H GT A GG DG V+++ GN+ K + ++ L++S DG LAV +
Sbjct: 453 IHKGSGTVAVGGADGKVHLYSIQGNSLKDEGKTLPAKGAVTDLAYSHDGAFLAVTDA 509
>sp|Q6DIF4|WDR1_XENTR WD repeat-containing protein 1 OS=Xenopus tropicalis GN=wdr1 PE=2
SV=1
Length = 607
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 40/313 (12%)
Query: 10 SGRELGN-----PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVL 64
+G ++GN GI + +S S LL +S DK+ +++D +AN F G VL
Sbjct: 220 TGEKVGNLGGSKAHDGGIYAVSWSADSTQLLSASGDKTAKIWDVAANSAVTTFHLGTEVL 279
Query: 65 D---CCFHDDSSGFSASADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSYAAGQ--VIT 117
D C S S + L ++ ++ H+ ++C+ + G+ + T
Sbjct: 280 DQQLGCLWQKDYLLSVSLSGYINYLDKNNPSRPLRVIKGHNKSIQCMTVHNSDGRSTIYT 339
Query: 118 GSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYDL--R 174
GS D + WD +G+ T G +V + L N+L+ + V L +
Sbjct: 340 GSHDGHINYWDAE--TGENDTFTGK-GHTNQVSRMDLDSSNQLITCSMDDTVRYTSLTSK 396
Query: 175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
+ S E + + Q +CV GY ++ G++ + K +
Sbjct: 397 DYSSSESVK---MDVQPKCVAV--GSGGYVVTLCIGQIVL---------------LKDKK 436
Query: 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW--DGNNKKRLYQYSKYPTSIAALS 292
K A + Y A+A H GT A GG DG V+++ GN+ K + ++ L+
Sbjct: 437 KVFAIDSLDYEPEAVAIHKGSGTVAVGGVDGNVHLYSIQGNSLKDEGKSLPVKGAVTDLA 496
Query: 293 FSRDGRLLAVASS 305
+S DG LAV +
Sbjct: 497 YSHDGAFLAVTDA 509
>sp|Q5JTN6|WDR38_HUMAN WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1
Length = 314
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 111/278 (39%), Gaps = 18/278 (6%)
Query: 27 FSNHSDHLLVSSWDKSVRLYDA-SANVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVR 84
FS LL S D V ++ S +L H GPV C F D F SAS D TVR
Sbjct: 29 FSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTVR 88
Query: 85 RLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY 143
+ K +L H V + +S + Q+ +G WDK + WD + SGQ L+ +
Sbjct: 89 LWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQ--SGQMLRLLVGH 146
Query: 144 PQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGY 203
+ S N L + V+++DLR M P + +L+ + + C
Sbjct: 147 RDSIQSSDFSPTVNCLATGSWDSTVHIWDLR-MVTPAVSHQ-ALEGHSANISCLCYSASG 204
Query: 204 ALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC 263
L+S + + + +S + K H V V +IAF P A+ G
Sbjct: 205 LLASGSWDKTIHIWKPTTSSLLIQ--LKGH---------VTWVKSIAFSPDELWLASAGY 253
Query: 264 DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA 301
V VWD N K L +F+ DG++L
Sbjct: 254 SRMVKVWDCNTGKCLETLKGVLDVAHTCAFTPDGKILV 291
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDA-SANVLRGEFMHGGPVLDCCFHDDSSGF-SASA 79
+ + FS S L WDK V L+D S +LR H + F + + S
Sbjct: 108 VETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSW 167
Query: 80 DHTVR----RLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
D TV R+V L H A + C+ YS A+G + +GSWDK++ W P +S
Sbjct: 168 DSTVHIWDLRMVTPAVSHQALEGHSANISCLCYS-ASGLLASGSWDKTIHIWKPTTSS-- 224
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYD 172
L+ V S++ + L +A+AG R V V+D
Sbjct: 225 --LLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWD 261
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
VN+ AF P TG DG V W+ + + L++ + + FS DG L A AS
Sbjct: 24 VNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASAS 82
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 70/193 (36%), Gaps = 24/193 (12%)
Query: 79 ADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT 138
A VRR+ F G+H V +S ++TGS D + W+ R SGQ
Sbjct: 7 ATLAVRRVKF-------FGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETR--SGQLLW 57
Query: 139 LVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP 198
+G + P + S G+ A+ V ++D+ + +T V P
Sbjct: 58 RLGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVET--VSFSP 115
Query: 199 NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF 258
+ A + RV + +D+ + HR S D F P
Sbjct: 116 DSRQLASGGWDKRVML--WDVQSGQMLRLLVG--HRDSIQSSD---------FSPTVNCL 162
Query: 259 ATGGCDGFVNVWD 271
ATG D V++WD
Sbjct: 163 ATGSWDSTVHIWD 175
>sp|Q6PAX7|WDR1B_XENLA WD repeat-containing protein 1-B OS=Xenopus laevis GN=wdr1-b PE=2
SV=1
Length = 607
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 35/297 (11%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLD----CCFHDDSSGFS 76
GI + +S LL +S DK+ +++D +AN F G VLD C + D S
Sbjct: 236 GIYAVSWSPDGTQLLSASGDKTAKIWDVAANSAVTTFNLGSDVLDQQLGCLWQKDYL-LS 294
Query: 77 ASADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGA 132
S + L ++ + I+ H+ ++C+ + G+ + TGS D + WD
Sbjct: 295 VSLSGYINYLDKNNPAKPFRIIKGHNKSIQCMTVDKSDGRSTIYTGSHDGHINYWDAE-- 352
Query: 133 SGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKY--Q 190
+G+ T G +V S+ L G+ ++ + Y N+ + S+K Q
Sbjct: 353 TGENNTFTGK-GHTNQVSSMDLDGSSQLITCSMDDTLRY--TNLISKDYSSSESVKMDVQ 409
Query: 191 TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250
+CV GY ++ G++ + K +K A + Y A+A
Sbjct: 410 PKCVAV--GSGGYVVTVCIGQIVL---------------LKDKKKVFAIDSLDYEPEAVA 452
Query: 251 FHPIYGTFATGGCDGFVNVW--DGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
H GT + GG DG V+++ GN+ K + ++ L++S DG LAV +
Sbjct: 453 IHKGSGTVSVGGADGKVHLYSIQGNSLKDEGKTLPAKGAVTDLAYSPDGAFLAVTDA 509
>sp|Q23256|YH92_CAEEL Uncharacterized WD repeat-containing protein ZC302.2
OS=Caenorhabditis elegans GN=ZC302.2 PE=4 SV=1
Length = 501
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 105/259 (40%), Gaps = 20/259 (7%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDA-SANVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
GI++ +S++S + +S D +V+++D S LR H V C F+ SS SA
Sbjct: 257 GINDFSWSSNSQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASAG 316
Query: 79 ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
D TVR F G + H P+ I Y++ + T S+D ++ WD ASG
Sbjct: 317 FDETVRVWDFKTGLCVKCIPAHSDPITSISYNHDGNTMATSSYDGCIRVWD--AASGSCL 374
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRC 196
+TLV T P S G L+ A + ++D ++ LKY
Sbjct: 375 KTLVDTDHAPVTFVCFSPNGKYLLSAQLDSSLKLWD--------PKKAKPLKY----YNG 422
Query: 197 YPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG 256
+ N +++ + SE + ++ + + + PV A HP
Sbjct: 423 HKNKKYCLFANMSVPLGKHIISGSEDGRILVWSIQTKQIVQILEGHTTPVLATDSHPTLN 482
Query: 257 TFATGGC--DGFVNVWDGN 273
A+GG D + +W N
Sbjct: 483 IIASGGLEPDNVIRIWRRN 501
>sp|O74855|NLE1_SCHPO Ribosome assembly protein C18.05c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC18.05c PE=3 SV=1
Length = 502
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 46/287 (16%)
Query: 38 SWDKSVRLYDASANVLRGEFM--HGGPVLDCCFHD-----DSSGF---SASADHTVR--- 84
S D ++R +D G+ + H P++ C+ DS + S S D+TVR
Sbjct: 196 SMDNTIRFWDPKKGSPIGDALRRHTKPIMALCWQPLHLAPDSGPYLLASGSKDNTVRIWN 255
Query: 85 ----RLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV 140
L+F+ L H AP+ C+ + + + S+DK+++ WD + + L
Sbjct: 256 VKLRTLLFT------LSGHTAPITCVRWG-GQNWIYSSSYDKTIRIWDAKDG----KCLH 304
Query: 141 GTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG 200
RV LSL ++ + A H D + S ++RR++ +Y+ C++
Sbjct: 305 ILKGHAARVNHLSLSTEHVLRSGAYDHT---DFKPKSFSDERRKAKERYEA-CLK----Q 356
Query: 201 TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFAT 260
+G L S + + +D ++ K K H + VN +F P AT
Sbjct: 357 SGERLVSASDDLQLILWD---PQKSTKPITKMHGHQKV-------VNHASFSPDGRCIAT 406
Query: 261 GGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307
D V +WDG K L + ++ ++S D RLL +S T
Sbjct: 407 ASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVSSSQDT 453
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VLRGEFMHGGPVLDCCFHDDSSGFSA 77
+++ FS + +S+D SVRL+D LRG H V C + DS +
Sbjct: 392 VNHASFSPDGRCIATASFDSSVRLWDGKTGKFLATLRG---HVAAVYQCAWSTDSRLLVS 448
Query: 78 SADHTVRRL--VFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCW 127
S+ T ++ V S + L H+ V +++S +V +G DK+++ W
Sbjct: 449 SSQDTTLKVWDVRSKKMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIW 500
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1
Length = 1526
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 126/291 (43%), Gaps = 28/291 (9%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VLRGEFMHGGPVLDCCFHDDSSGF-S 76
+ ++ F+ L S D++VRL+D S++ + +G H V F D + S
Sbjct: 993 VYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQG---HTSCVRSVVFSSDGAMLAS 1049
Query: 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
S D TVR S G L H + VR + +S + +G D+ ++ WD +SG
Sbjct: 1050 GSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDI--SSGN 1107
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVR 195
+ Y R S G L ++ + V ++D+ + ++ +L+ T V
Sbjct: 1108 CLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISS-----KKCLYTLQGHTNWVN 1162
Query: 196 CYP-NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI 254
+ G L+S G + +D+S S Y + H VN++ F+P
Sbjct: 1163 AVAFSPDGATLASGSGDQTVRLWDIS--SSKCLYILQGHTS---------WVNSVVFNPD 1211
Query: 255 YGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
T A+G D V +W+ N+ K L + + + + ++ F+ DG +LA SS
Sbjct: 1212 GSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSS 1262
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 112/272 (41%), Gaps = 31/272 (11%)
Query: 47 DASANVLRGEFMHGGPVLDCCFHD---DSSGFS--------ASADHTVRRLVFSHGK-ED 94
D+ V E G +L C H+ +S GFS S D TVR S G+
Sbjct: 883 DSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLK 942
Query: 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL 154
H + VR + +S + + +GS D++++ WD +SG+ + + + +L
Sbjct: 943 TFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDI--SSGECLYIFQGHTGWVYSVAFNL 1000
Query: 155 VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP-NGTGYALSSVEGRVA 213
G+ L + + V ++D+ + + + T CVR + G L+S
Sbjct: 1001 DGSMLATGSGDQTVRLWDISS-----SQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQT 1055
Query: 214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273
+ +D+S + Y + H V ++ F P A+GG D V +WD +
Sbjct: 1056 VRLWDISSGNCL--YTLQGHTSC---------VRSVVFSPDGAMLASGGDDQIVRLWDIS 1104
Query: 274 NKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
+ LY Y + + L FS +G LA SS
Sbjct: 1105 SGNCLYTLQGYTSWVRFLVFSPNGVTLANGSS 1136
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 123/297 (41%), Gaps = 36/297 (12%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VLRGEFMHGGPVLDCCFHDDSSG 74
++ ++ + FS L S D++VRL+D S++ +L+G H V F+ D S
Sbjct: 1158 TNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQG---HTSWVNSVVFNPDGST 1214
Query: 75 F-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132
S S+D TVR + K H + V + ++ + +GS DK+++ WD +
Sbjct: 1215 LASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI-SS 1273
Query: 133 SGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS-----QPEQRRESSL 187
S T G V + + G+ L + + V ++++ + Q SS+
Sbjct: 1274 SKCLHTFQGHTNWVNSV-AFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSV 1332
Query: 188 KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247
+ P+GT A S + V + S +S Y F H V
Sbjct: 1333 TFS-------PDGTMLASGSDDQTVRL----WSISSGECLYTFLGHTN---------WVG 1372
Query: 248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
++ F P A+G D V +W ++ K LY + + ++ FS DG LLA S
Sbjct: 1373 SVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGS 1429
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 136/326 (41%), Gaps = 58/326 (17%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYD-ASANVLRGEFMHGGPVLDCCFHDDSSGFSASAD 80
+ ++ FS+ L S D++VRL+D +S N L H V F D + ++ D
Sbjct: 1035 VRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGD 1094
Query: 81 HTVRRL--VFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD---------- 128
+ RL + S L + + VR + +S + GS D+ ++ WD
Sbjct: 1095 DQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTL 1154
Query: 129 -------------PRGA-----SGQERTLVGTYPQPERVYSL--------SLV----GNR 158
P GA SG + + + +Y L S+V G+
Sbjct: 1155 QGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGST 1214
Query: 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD 218
L ++ + V ++++ N S+ + + V P+G+ A S + V + +D
Sbjct: 1215 LASGSSDQTVRLWEI-NSSKCLCTFQGHTSW-VNSVVFNPDGSMLASGSSDKTVRL--WD 1270
Query: 219 LSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRL 278
+S S + F+ H VN++AF+P A+G D V +W+ ++ K L
Sbjct: 1271 IS--SSKCLHTFQGHTN---------WVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCL 1319
Query: 279 YQYSKYPTSIAALSFSRDGRLLAVAS 304
+ + + + +++++FS DG +LA S
Sbjct: 1320 HTFQGHTSWVSSVTFSPDGTMLASGS 1345
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 197 YPNGTGYALSSVEGRVAMEFFDLSEA----SQAKKYAFKCHRKSEAG------RDIVYPV 246
Y G L ++ +E DLS + + +C +EA I+ V
Sbjct: 808 YVGGNAATLLVKLNKMVLEGRDLSHTVIIGADFTNTSLRCVNFTEANLAYSVFTKILGSV 867
Query: 247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
+AF P FATG G V W+ K L + + + ++ FS+DG++LA S
Sbjct: 868 LTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGS 925
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 117/286 (40%), Gaps = 20/286 (6%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-SASA 79
++++ F+ L S D++VRL++ +++ F H V F+ D S S S+
Sbjct: 1203 VNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSS 1262
Query: 80 DHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT 138
D TVR S K H V + ++ + +GS D++++ W+ +S T
Sbjct: 1263 DKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEI-SSSKCLHT 1321
Query: 139 LVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP 198
G V + S G L + + V ++ + + + + L +
Sbjct: 1322 FQGHTSWVSSV-TFSPDGTMLASGSDDQTVRLWSISS----GECLYTFLGHTNWVGSVIF 1376
Query: 199 NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF 258
+ G L+S G + + +S S Y + H V +I F P
Sbjct: 1377 SPDGAILASGSGDQTVRLWSIS--SGKCLYTLQGHNN---------WVGSIVFSPDGTLL 1425
Query: 259 ATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
A+G D V +W+ ++ + LY + S+ +++FS DG +LA S
Sbjct: 1426 ASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGS 1471
>sp|P42841|PFS2_YEAST Polyadenylation factor subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PFS2 PE=1 SV=1
Length = 465
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 118/265 (44%), Gaps = 39/265 (14%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFSASA 79
++ +++S+ SD ++ D ++++ + ++++ + H + D F + S F +
Sbjct: 137 AVTTMKYSHDSDWMISGDADGMIKIWQPNFSMVKEIDAAHTESIRDMAFSSNDSKFVTCS 196
Query: 80 DHTVRRLV-FSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS---- 133
D + ++ FS+GK++ +L H V+ ++ G + + S D +K WDPR +
Sbjct: 197 DDNILKIWNFSNGKQERVLSGHHWDVKSCDWHPEMGLIASASKDNLVKLWDPRSGNCISS 256
Query: 134 --GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
+ T++ T QP + GN L+ + + V+D+R + Y T
Sbjct: 257 ILKFKHTVLKTRFQPTK-------GNLLMAISKDKSCRVFDIRYSMKELMCVRDETDYMT 309
Query: 192 RCVRCYP-NGTGYALSSVEGRVAMEFFD----LSEASQAKKYAF-KCHRKSEAGRDIVYP 245
+ +P N + + L+ +G +++ FD L+E YA KC
Sbjct: 310 --LEWHPINESMFTLACYDG--SLKHFDLLQNLNEPILTIPYAHDKC------------- 352
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVW 270
+ +++++P+ FAT D + W
Sbjct: 353 ITSLSYNPVGHIFATAAKDRTIRFW 377
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL 152
E ++ HD+ V ++YS+ + +I+G D +K W P + +E T E + +
Sbjct: 128 ETLMQAHDSAVTTMKYSHDSDWMISGDADGMIKIWQPNFSMVKEIDAAHT----ESIRDM 183
Query: 153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRR 183
+ N T N+ + N S +Q R
Sbjct: 184 AFSSNDSKFVTCSDD-NILKIWNFSNGKQER 213
>sp|Q8NBT0|POC1A_HUMAN POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1
SV=2
Length = 407
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 19/208 (9%)
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158
H V C+ +S + + +GS DK+++ W P E T+ + R G
Sbjct: 60 HKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKG--ESTVFRAHTATVRSVHFCSDGQS 117
Query: 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD 218
V A+ + V V+ + Q+ SL VRC A S +GR+ + D
Sbjct: 118 FVTASDDKTVKVW-----ATHRQKFLFSLSQHINWVRC-------AKFSPDGRLIVSASD 165
Query: 219 LSEASQAKKYAFKC-HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR 277
K + +C H E G + Y + FHP A G D V VWD +
Sbjct: 166 DKTVKLWDKSSRECVHSYCEHGGFVTY----VDFHPSGTCIAAAGMDNTVKVWDVRTHRL 221
Query: 278 LYQYSKYPTSIAALSFSRDGRLLAVASS 305
L Y + ++ LSF G L ASS
Sbjct: 222 LQHYQLHSAAVNGLSFHPSGNYLITASS 249
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 108/266 (40%), Gaps = 38/266 (14%)
Query: 20 DGISNLRFSNHSDHLLVS-SWDKSVRLY----DASANVLRGEFMHGGPVLDCCFHDDSSG 74
D ++ + FS S HLL S S DK+VR++ + V R H V F D
Sbjct: 62 DAVTCVNFSP-SGHLLASGSRDKTVRIWVPNVKGESTVFRA---HTATVRSVHFCSDGQS 117
Query: 75 FSASADHTVRRLVFSHGKEDI--LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132
F ++D ++ +H ++ + L +H VRC ++S +++ S DK++K WD
Sbjct: 118 FVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDK--- 174
Query: 133 SGQERTLVGTYPQPERVYS---LSLVGNRLVVATAGRHVNVYDLRN--MSQPEQRRESSL 187
R V +Y + + G + A V V+D+R + Q Q +++
Sbjct: 175 --SSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAV 232
Query: 188 KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247
+ +P+G +S + ++ DL E Y H+ P
Sbjct: 233 N----GLSFHPSGNYLITASSDS--TLKILDLMEGRLL--YTLHGHQG---------PAT 275
Query: 248 AIAFHPIYGTFATGGCDGFVNVWDGN 273
+AF FA+GG D V VW N
Sbjct: 276 TVAFSRTGEYFASGGSDEQVMVWKSN 301
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 230 FKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA 289
FK HR + V + F A+G D + VW + R Y+++ + ++
Sbjct: 15 FKGHRDA---------VTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVT 65
Query: 290 ALSFSRDGRLLAVAS 304
++FS G LLA S
Sbjct: 66 CVNFSPSGHLLASGS 80
>sp|A8NEG8|LIS1_COPC7 Nuclear distribution protein PAC1 OS=Coprinopsis cinerea (strain
Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=PAC1
PE=3 SV=3
Length = 434
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 47/281 (16%)
Query: 49 SANVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCI 106
+A+VL G H P+ FH S SAS D TV+ + G+ E L H PV +
Sbjct: 100 AAHVLTG---HRAPLTSIAFHPQYSILASASEDTTVKIWDWETGEFERTLKGHTKPVNDL 156
Query: 107 EYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV-GNRLVV-ATA 164
++ + ++T S D +K WD + +T VG V ++ + G++L+V A+
Sbjct: 157 DFDHKGHLLVTCSSDLFIKIWDSQNEWKNTKTFVG---HDHAVSAVRFMPGDQLIVSASR 213
Query: 165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVRC-YPNGTGYALSSVEGRVAMEFFDLSEAS 223
R + V+D+ + Q +L + VRC P+ G L+S + +D +
Sbjct: 214 DRTIRVFDVASTHQVR-----TLSGHSEWVRCVIPSADGTMLASGSKDQTVRLWD--PLT 266
Query: 224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI-------------------YGTF-ATGGC 263
K + H V A+AF PI +G F A+G
Sbjct: 267 GEPKSELRGHEND---------VEAVAFAPISAYAAIRELAGIPNDRTKRHGLFLASGAR 317
Query: 264 DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
D V +WD + + + + + AL+F G+ L +S
Sbjct: 318 DKTVKLWDTQTGQMIRNLAGHDNWVRALAFHPSGKYLLSSS 358
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%)
Query: 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
P+ +IAFHP Y A+ D V +WD + + + L F G LL S
Sbjct: 110 PLTSIAFHPQYSILASASEDTTVKIWDWETGEFERTLKGHTKPVNDLDFDHKGHLLVTCS 169
Query: 305 SYTF 308
S F
Sbjct: 170 SDLF 173
>sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2
SV=1
Length = 451
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 24/286 (8%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-SAS 78
I++L S + L +SWD + L++ + ++ H V F + SAS
Sbjct: 20 AITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASAS 79
Query: 79 ADHTVRRLV-FSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQER 137
D TVR + GK H APVR +++S + T S DKS+K W + ++R
Sbjct: 80 RDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVW----SMYRQR 135
Query: 138 TLVGTYPQPE--RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVR 195
L Y R S G +V + + + ++D N Q S+ + V
Sbjct: 136 FLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN-KQCVNNFSDSVGF-ANFVD 193
Query: 196 CYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY 255
P+GT A + + V + +++ Q H + +G VN I+FHP
Sbjct: 194 FNPSGTCIASAGSDQTVKVWDVRVNKLLQ--------HYQVHSG-----GVNCISFHPSD 240
Query: 256 GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA 301
T DG + + D + +Y + + +SFS+ G L A
Sbjct: 241 NYLVTASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFA 286
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 34/264 (12%)
Query: 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFHDDSSGF-SA 77
D +++++FS H + L +S D++VRL+ EF H PV F D +A
Sbjct: 61 DVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATA 120
Query: 78 SADHTVRRLVFSHGKEDI---LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG 134
S D +++ V+S ++ L +H VRC ++S +++ S DK++K WD
Sbjct: 121 SEDKSIK--VWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN--- 175
Query: 135 QERTLVGTYPQP---ERVYSLSLVGNRLVVATAGRHVNVYDLR--NMSQPEQRRESSLKY 189
+ V + + G + A + + V V+D+R + Q Q +
Sbjct: 176 --KQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVN- 232
Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249
C+ +P+ +S +G ++ DL E Y + H PV +
Sbjct: 233 ---CISFHPSDNYLVTASSDG--TLKILDLLEGRLI--YTLQGHTG---------PVFTV 276
Query: 250 AFHPIYGTFATGGCDGFVNVWDGN 273
+F FA+GG D V +W N
Sbjct: 277 SFSKGGELFASGGADTQVLLWRTN 300
>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1
SV=1
Length = 478
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 24/286 (8%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-SAS 78
I++L S + L +SWD + L++ + ++ H V F + SAS
Sbjct: 20 AITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASAS 79
Query: 79 ADHTVRRLV-FSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQER 137
D TVR + GK H APVR +++S + T S DKS+K W + ++R
Sbjct: 80 RDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVW----SMYRQR 135
Query: 138 TLVGTYPQPE--RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVR 195
L Y R S G +V + + + ++D N Q S+ + V
Sbjct: 136 FLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN-KQCVNNFSDSVGF-ANFVD 193
Query: 196 CYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY 255
P+GT A + + V + +++ Q H + +G VN I+FHP
Sbjct: 194 FNPSGTCIASAGSDQTVKVWDVRVNKLLQ--------HYQVHSG-----GVNCISFHPSG 240
Query: 256 GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA 301
T DG + + D + +Y + + +SFS+ G L A
Sbjct: 241 NYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFA 286
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 132/327 (40%), Gaps = 52/327 (15%)
Query: 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF----MHGGPVLDCCFHDDSSGF 75
D +++++FS H + L +S D++VRL+ RG+F H PV F D
Sbjct: 61 DVVTSVQFSPHGNLLASASRDRTVRLWIPDK---RGKFSEFKAHTAPVRSVDFSADGQFL 117
Query: 76 -SASADHTVRRLVFSHGKEDI---LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
+AS D +++ V+S ++ L +H VRC ++S +++ S DK++K WD
Sbjct: 118 ATASEDKSIK--VWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN 175
Query: 132 ASGQERTLVGTYPQP---ERVYSLSLVGNRLVVATAGRHVNVYDLR--NMSQPEQRRESS 186
+ V + + G + A + + V V+D+R + Q Q
Sbjct: 176 -----KQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGG 230
Query: 187 LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV 246
+ C+ +P+G +S +G ++ DL E Y + H PV
Sbjct: 231 VN----CISFHPSGNYLITASSDG--TLKILDLLEGRLI--YTLQGHTG---------PV 273
Query: 247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY 306
++F FA+GG D V +W N L+ ++ L F LL +
Sbjct: 274 FTVSFSKGGELFASGGADTQVLLW-RTNFDELHCKGLTKRNLKRLHFDSPPHLLDI---- 328
Query: 307 TFEEGDKPHEPDAIFVRSVNEIEVKPK 333
+ PHE V +E+ PK
Sbjct: 329 -YPRTPHPHE------EKVETVEINPK 348
>sp|Q9VU65|POC1_DROME POC1 centriolar protein homolog OS=Drosophila melanogaster GN=Poc1
PE=2 SV=1
Length = 391
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 120/294 (40%), Gaps = 28/294 (9%)
Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGFSA 77
S GI+ LRF + SS D +V L++ + F H PV + A
Sbjct: 18 SGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAW-SPKGNLVA 76
Query: 78 SADHTVRRLVFSHGKEDILGK---HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG 134
SA H ++ + G+ H VR +++ ++T S DKS K W R A
Sbjct: 77 SAGHDRTVKIWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIW--RVA-- 132
Query: 135 QERTLVGTYPQPER-VYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQRRESSLKYQT 191
R V ++ Q V S N +VATA + V +YD+ S R + +
Sbjct: 133 -RRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDVD--SGECVRTFTEERAAP 189
Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
R + +P G A++ R+ + FD+S + + Y PVN +AF
Sbjct: 190 RQLAWHPWGNMLAVALGCNRI--KIFDVSGSQLLQLYVVHS-----------APVNDVAF 236
Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
HP +G D + + D + +Y + + ++ A++FSRDG A S
Sbjct: 237 HPSGHFLLSGSDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGS 290
>sp|Q4V7Z1|POC1B_XENLA POC1 centriolar protein homolog B OS=Xenopus laevis GN=poc1b PE=1
SV=1
Length = 468
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 25/211 (11%)
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158
H V C+++S + V + S D++++ W P E T++ + R + S G
Sbjct: 59 HKEAVTCVQFSPSGHLVASSSKDRTVRLWAPNIKG--ESTVLKAHTAVVRCVNFSSDGQT 116
Query: 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT---RCVRCYPNGTGYALSSVEGRVAME 215
+ A+ + + ++L QR SL T RC R P+G A S + V
Sbjct: 117 FITASDDKSIKAWNLH-----RQRFLFSLTQHTNWVRCARFSPDGRLIASCSDDKTV--R 169
Query: 216 FFDLSEASQAKKYA-FKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN 274
+DL+ + +K H N + F+ + A+ G D V VWD
Sbjct: 170 IWDLTNRLCINTFVDYKGHS------------NYVDFNQMGTCVASAGADSTVKVWDIRM 217
Query: 275 KKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
K L Y + +++LSF G L ASS
Sbjct: 218 NKLLQHYQVHNAGVSSLSFHPSGNYLLTASS 248
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 114/279 (40%), Gaps = 58/279 (20%)
Query: 20 DGISNLRFSNHSDHLLVSS-WDKSVRLY----DASANVLRGEFMHGGPVLDCCFHDDSSG 74
+ ++ ++FS S HL+ SS D++VRL+ + VL+ H V F D
Sbjct: 61 EAVTCVQFSP-SGHLVASSSKDRTVRLWAPNIKGESTVLKA---HTAVVRCVNFSSDGQT 116
Query: 75 F-SASADHTVR-------RLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKC 126
F +AS D +++ R +FS L +H VRC +S + + S DK+++
Sbjct: 117 FITASDDKSIKAWNLHRQRFLFS------LTQHTNWVRCARFSPDGRLIASCSDDKTVRI 170
Query: 127 WDPRGASGQERTLVGT---YPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR 183
WD R + T Y + +G + A A V V+D+R M++ Q
Sbjct: 171 WDLTN-----RLCINTFVDYKGHSNYVDFNQMGTCVASAGADSTVKVWDIR-MNKLLQHY 224
Query: 184 E------SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSE 237
+ SSL + +P+G +S +G ++ DL E Y H+
Sbjct: 225 QVHNAGVSSLSF-------HPSGNYLLTASSDG--TLKILDLLEGRLI--YTLHGHQG-- 271
Query: 238 AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK 276
PV ++ F FA+G D V VW N K
Sbjct: 272 -------PVLSVTFSKSGDQFASGATDAQVLVWKTNFDK 303
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
V + F P A+ D V +W+ + R Y+Y + ++ + FS G L+A +S
Sbjct: 21 VTCVDFSPDSKQLASSSADACVMIWNFKPQSRAYKYPGHKEAVTCVQFSPSGHLVASSS 79
>sp|F6ZT52|POC1B_XENTR POC1 centriolar protein homolog B OS=Xenopus tropicalis GN=poc1b
PE=2 SV=1
Length = 470
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 25/211 (11%)
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158
H V C+++S + V + S D++++ W P E +++ + R + S G+
Sbjct: 59 HKEAVTCVQFSPSGHLVASSSKDRTVRLWAPNIKG--ESSVLKAHTAVVRCVNFSSDGHT 116
Query: 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT---RCVRCYPNGTGYALSSVEGRVAME 215
+ A+ + + ++L QR SL T RC R P+G ++S +
Sbjct: 117 FITASDDKSIKAWNLH-----RQRFLYSLTEHTNWVRCARFSPDGR--LIASCSDDKTVR 169
Query: 216 FFDLSEASQAKKYA-FKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN 274
+D++ + +K H N + F+P+ A+ G D V VWD
Sbjct: 170 IWDITNRLCINTFVDYKGHS------------NYVDFNPMGTCVASAGVDSTVKVWDIRT 217
Query: 275 KKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
K L Y + + +LSF G L AS+
Sbjct: 218 NKLLQHYQVHNAGVNSLSFHPSGNYLLTASN 248
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 109/274 (39%), Gaps = 48/274 (17%)
Query: 20 DGISNLRFSNHSDHLLVSSWDKSVRLY----DASANVLRGEFMHGGPVLDCCFHDDSSGF 75
+ ++ ++FS + SS D++VRL+ ++VL+ H V F D F
Sbjct: 61 EAVTCVQFSPSGHLVASSSKDRTVRLWAPNIKGESSVLKA---HTAVVRCVNFSSDGHTF 117
Query: 76 -SASADHTVR-------RLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCW 127
+AS D +++ R ++S L +H VRC +S + + S DK+++ W
Sbjct: 118 ITASDDKSIKAWNLHRQRFLYS------LTEHTNWVRCARFSPDGRLIASCSDDKTVRIW 171
Query: 128 DPRGASGQERTLVGT---YPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN--MSQPEQR 182
D R + T Y + +G + A V V+D+R + Q Q
Sbjct: 172 DITN-----RLCINTFVDYKGHSNYVDFNPMGTCVASAGVDSTVKVWDIRTNKLLQHYQV 226
Query: 183 RESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI 242
+ + + +P+G +S +G V + DL E Y H+
Sbjct: 227 HNAGVN----SLSFHPSGNYLLTASNDGTV--KILDLLEGRLI--YTLHGHQG------- 271
Query: 243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK 276
PV ++AF FA+G D V VW N K
Sbjct: 272 --PVLSVAFSKSGDQFASGATDAQVLVWKTNFDK 303
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
V + F P A+ D V +W+ + R Y+Y + ++ + FS G L+A +S
Sbjct: 21 VTYVDFSPDGKQLASSSADACVMIWNFKPQSRAYKYPGHKEAVTCVQFSPSGHLVASSS 79
>sp|O93277|WDR1_CHICK WD repeat-containing protein 1 OS=Gallus gallus GN=WDR1 PE=2 SV=1
Length = 609
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 122/302 (40%), Gaps = 33/302 (10%)
Query: 15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLD---CCFHDD 71
G GI + +S S LL +S DK+ +++D AN + F G VLD C
Sbjct: 232 GKAHDGGIYAISWSPDSSQLLSASGDKTAKIWDVGANSVVSTFNMGSNVLDQQLGCLWQK 291
Query: 72 SSGFSASADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCW 127
S S + L ++ + ++ H ++C+ G+ + +GS D + W
Sbjct: 292 DHLLSLSLSGYINYLDKNNPDKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSNDGHINYW 351
Query: 128 DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSL 187
D + G Q R+ + ++LV + V N+S+ + + ++
Sbjct: 352 DSDTGENDGFSGKGHTNQVSRMAVDEM--DQLVTCSMDDTVR---YTNLSKRDYSGQDAV 406
Query: 188 KY--QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP 245
K Q +C+ P GY + G++ + K +K A D+ Y
Sbjct: 407 KMDVQPKCLAVGPG--GYTVVLCIGQIVL---------------MKDKKKCFAIDDLGYE 449
Query: 246 VNAIAFHPIYGTFATGGCDGFVNVW--DGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVA 303
A+A HP G+ A GG DG V ++ G + K + + + L++S DG LAV
Sbjct: 450 PEAVAVHPGGGSVAVGGTDGNVRLYSIQGTSLKSDDKTLEAKGPVTDLAYSHDGAFLAVC 509
Query: 304 SS 305
+
Sbjct: 510 DA 511
>sp|Q7ZVF0|POC1A_DANRE POC1 centriolar protein homolog A OS=Danio rerio GN=poc1a PE=2 SV=1
Length = 416
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 116/292 (39%), Gaps = 68/292 (23%)
Query: 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM----HGGPVLDCCFHDDSSGF 75
D ++ ++FS + L SS DK+VRL+ S ++GE + H G V CF D
Sbjct: 61 DAVTCVQFSPSAHLLASSSRDKTVRLWVPS---VKGESVLFRAHTGSVRSVCFSADGQSL 117
Query: 76 SASADHTVRRLVFSHGKEDI--LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS 133
++D +L H ++ I L +H+ VRC +S +++ S D+++K WD
Sbjct: 118 LTASDDQSIKLWSVHRQKIICTLREHNNWVRCARFSPDGQLMVSVSDDRTVKLWD----- 172
Query: 134 GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRC 193
R L+ T+ +P G + + D
Sbjct: 173 ASSRQLIHTFCEP------------------GGYSSYVDF-------------------- 194
Query: 194 VRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP 253
+P+ T A +S + V +D+ + + Y + H + VNA++FHP
Sbjct: 195 ---HPSSTCIATASSDNTV--RVWDIRTHTLLQHY--QVHSAA---------VNALSFHP 238
Query: 254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
T D + + D + LY + S + +SFSR G A A S
Sbjct: 239 SGNHLLTASSDSTLKILDLLEGRLLYTLHGHQGSASCVSFSRSGDQFASAGS 290
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 21/209 (10%)
Query: 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDP--RGASGQERTLVGTYPQPERVYSLSLVG 156
H V C+++S +A + + S DK+++ W P +G S R G+ R S G
Sbjct: 59 HKDAVTCVQFSPSAHLLASSSRDKTVRLWVPSVKGESVLFRAHTGSV----RSVCFSADG 114
Query: 157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF 216
L+ A+ + + ++ + RE + RC R P+G + SV ++
Sbjct: 115 QSLLTASDDQSIKLWSVHRQKIICTLREHN--NWVRCARFSPDG--QLMVSVSDDRTVKL 170
Query: 217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK 276
+D S H E G Y + FHP AT D V VWD
Sbjct: 171 WDASSRQ-------LIHTFCEPGGYSSY----VDFHPSSTCIATASSDNTVRVWDIRTHT 219
Query: 277 RLYQYSKYPTSIAALSFSRDGRLLAVASS 305
L Y + ++ ALSF G L ASS
Sbjct: 220 LLQHYQVHSAAVNALSFHPSGNHLLTASS 248
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 230 FKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA 289
FK HR + + ++ F P A+G D V VW+ + R Y+++ + ++
Sbjct: 14 FKGHRDA---------ITSLDFSPSGKQIASGSVDASVMVWNMKPQSRAYRFTGHKDAVT 64
Query: 290 ALSFSRDGRLLAVAS 304
+ FS LLA +S
Sbjct: 65 CVQFSPSAHLLASSS 79
>sp|Q4I7X1|PFS2_GIBZE Polyadenylation factor subunit 2 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PFS2 PE=3
SV=1
Length = 612
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASA 79
I L +S+ D L+ + D +V+ + + N ++ H P+ D F S F +AS
Sbjct: 139 AIRALEYSHSDDWLISADHDGAVKYWQPNFNNVQSINAHTDPIRDLAFSPSDSKFVTASD 198
Query: 80 DHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT 138
D T++ F+ G+ E L H + +++ G +++GS D +K WDPR S T
Sbjct: 199 DSTLKIFDFALGQMESKLEGHGWDAKSVDWHPTKGLLVSGSKDHLVKLWDPR-TSRCLTT 257
Query: 139 LVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNM 176
L G +V + G L + + V+DLR M
Sbjct: 258 LHGHKSTITKVLFEKVRGACLATSARDQTARVFDLRMM 295
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 60/203 (29%)
Query: 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL 152
E I+ HD+ +R +EYS++ +I+ D ++K W P + Q + + P R +
Sbjct: 130 ETIMQAHDSAIRALEYSHSDDWLISADHDGAVKYWQPNFNNVQS---INAHTDPIRDLAF 186
Query: 153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV 212
S ++ V A+ + ++D +AL +E ++
Sbjct: 187 SPSDSKFVTASDDSTLKIFD------------------------------FALGQMESKL 216
Query: 213 AMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG 272
+D ++ +HP G +G D V +WD
Sbjct: 217 EGHGWD---------------------------AKSVDWHPTKGLLVSGSKDHLVKLWDP 249
Query: 273 NNKKRLYQYSKYPTSIAALSFSR 295
+ L + ++I + F +
Sbjct: 250 RTSRCLTTLHGHKSTITKVLFEK 272
>sp|Q6BVZ3|PFS2_DEBHA Polyadenylation factor subunit 2 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PFS2 PE=3 SV=2
Length = 504
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 27/267 (10%)
Query: 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSSGFSASA 79
I +L++S++ + LL ++ + + N + H + D F +DS + S
Sbjct: 166 AILSLKYSHNDEWLLSGDQSGVIKYWQTNFNNVNIINGHSDGIRDIAFSPNDSKFLTCSD 225
Query: 80 DHTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS----- 133
D T++ F++G+E+ L H V+ ++ G +++GS D +K WDPR +S
Sbjct: 226 DSTMKIWNFNNGQEERSLVGHHWDVKSADWHPNLGLIVSGSKDNLIKLWDPRASSCVSTL 285
Query: 134 -GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRH--VNVYDLRNMSQPEQRRESSLKYQ 190
G + T+ T QP G + ++A+ R ++DLR M R+ +
Sbjct: 286 HGFKHTITKTKFQP--------TGTKRLLASVSRDKSCRIFDLRTMKDILVIRDH--ETD 335
Query: 191 TRCVRCYP-NGTGYALSSVEGRVAMEFFD--LSEASQAKKYAFKCHRKSEAGRDIVY--- 244
CV +P + + ++ +G + D +S+ + EA I Y
Sbjct: 336 LSCVEWHPVHPSMITTAAYDGSMNHYIMDSYISDNNIKNDSNNNSTSPIEASHKIPYAHE 395
Query: 245 -PVNAIAFHPIYGTFATGGCDGFVNVW 270
++A+ +HP+ + G D W
Sbjct: 396 KAIHALEYHPLGHLLCSAGADRSARFW 422
>sp|Q8K4P0|WDR33_MOUSE pre-mRNA 3' end processing protein WDR33 OS=Mus musculus GN=Wdr33
PE=2 SV=1
Length = 1330
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 102/254 (40%), Gaps = 63/254 (24%)
Query: 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSA-SAD 80
+ + +S++ +L + V+ + ++ N ++ H + + F + F+ S D
Sbjct: 164 VRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDD 223
Query: 81 HTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWD--KSLKCWDPRGASGQER 137
TVR F E+ IL H A V+C+++ G V++GS D + +K WDP+ +GQ
Sbjct: 224 GTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPK--TGQSL 281
Query: 138 TLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY 197
+ + L+L GN L+ A+ ++D+RN+ + Q
Sbjct: 282 ATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQ---------------- 325
Query: 198 PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY-G 256
F+ H+K A+A+HP++ G
Sbjct: 326 -------------------------------VFRGHKKE---------ATAVAWHPVHEG 345
Query: 257 TFATGGCDGFVNVW 270
FA+GG DG + W
Sbjct: 346 LFASGGSDGSLLFW 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,855,518
Number of Sequences: 539616
Number of extensions: 5731069
Number of successful extensions: 17735
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 502
Number of HSP's that attempted gapping in prelim test: 13916
Number of HSP's gapped (non-prelim): 3714
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)