Query 019384
Match_columns 342
No_of_seqs 174 out of 1513
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 09:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1036 Mitotic spindle checkp 100.0 6.3E-53 1.4E-57 349.6 33.7 319 10-333 4-323 (323)
2 KOG0647 mRNA export protein (c 100.0 4.7E-48 1E-52 319.6 32.2 323 6-335 14-346 (347)
3 KOG0271 Notchless-like WD40 re 100.0 2.6E-43 5.5E-48 299.7 25.6 274 15-306 111-430 (480)
4 KOG0271 Notchless-like WD40 re 100.0 3.1E-42 6.7E-47 293.1 24.9 278 13-307 151-473 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 3.9E-41 8.4E-46 289.6 23.4 271 18-307 174-452 (459)
6 KOG0318 WD40 repeat stress pro 100.0 3.5E-39 7.5E-44 284.3 31.6 301 1-326 172-560 (603)
7 KOG0315 G-protein beta subunit 100.0 2.3E-38 4.9E-43 255.8 27.3 260 31-307 10-280 (311)
8 KOG0286 G-protein beta subunit 100.0 2.6E-37 5.7E-42 254.9 27.2 276 11-304 47-334 (343)
9 KOG0279 G protein beta subunit 100.0 3.3E-35 7.2E-40 241.0 29.5 282 14-326 10-313 (315)
10 KOG0316 Conserved WD40 repeat- 100.0 3.6E-34 7.9E-39 229.8 25.5 276 12-304 8-289 (307)
11 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-35 2.4E-40 256.0 16.9 237 16-271 214-458 (459)
12 KOG0265 U5 snRNP-specific prot 100.0 4.5E-34 9.7E-39 236.6 24.8 281 13-307 41-330 (338)
13 KOG0293 WD40 repeat-containing 100.0 5.4E-34 1.2E-38 245.0 23.3 293 8-328 213-515 (519)
14 KOG0282 mRNA splicing factor [ 100.0 1.6E-34 3.4E-39 252.8 19.1 291 2-307 183-496 (503)
15 KOG0273 Beta-transducin family 100.0 2.8E-33 6.2E-38 244.1 25.0 282 5-307 166-474 (524)
16 KOG0278 Serine/threonine kinas 100.0 6.3E-34 1.4E-38 230.2 16.6 275 14-307 9-289 (334)
17 KOG0284 Polyadenylation factor 100.0 2.2E-33 4.9E-38 240.9 19.1 280 8-306 84-371 (464)
18 KOG0266 WD40 repeat-containing 100.0 6.3E-32 1.4E-36 252.6 30.0 281 12-305 151-442 (456)
19 KOG1446 Histone H3 (Lys4) meth 100.0 1.8E-31 3.8E-36 223.0 29.1 275 18-306 13-296 (311)
20 KOG0263 Transcription initiati 100.0 2.1E-33 4.6E-38 258.8 19.2 263 19-307 378-641 (707)
21 KOG0286 G-protein beta subunit 100.0 3E-32 6.6E-37 225.0 23.5 241 16-271 94-343 (343)
22 KOG0295 WD40 repeat-containing 100.0 2.5E-32 5.4E-37 231.4 23.0 285 5-306 94-397 (406)
23 KOG0313 Microtubule binding pr 100.0 6.9E-32 1.5E-36 229.9 25.1 276 15-307 101-410 (423)
24 PLN00181 protein SPA1-RELATED; 100.0 5.1E-31 1.1E-35 263.3 35.6 280 17-325 481-792 (793)
25 KOG0291 WD40-repeat-containing 100.0 4.1E-31 8.8E-36 242.2 31.0 273 19-307 265-542 (893)
26 KOG0285 Pleiotropic regulator 100.0 3.2E-31 7E-36 224.3 26.3 290 5-327 138-440 (460)
27 KOG0281 Beta-TrCP (transducin 100.0 3.2E-32 6.9E-37 229.7 18.8 272 16-327 194-478 (499)
28 KOG0279 G protein beta subunit 100.0 4.5E-31 9.7E-36 216.8 25.0 248 16-273 60-313 (315)
29 KOG0296 Angio-associated migra 100.0 4.9E-31 1.1E-35 223.7 25.5 282 10-307 95-390 (399)
30 KOG0315 G-protein beta subunit 100.0 1.1E-30 2.4E-35 211.3 26.1 260 19-293 40-308 (311)
31 KOG0273 Beta-transducin family 100.0 1.1E-30 2.3E-35 228.1 27.6 270 17-307 233-515 (524)
32 KOG0288 WD40 repeat protein Ti 100.0 2.3E-32 5.1E-37 235.0 14.9 283 8-307 164-453 (459)
33 cd00200 WD40 WD40 domain, foun 100.0 1.6E-29 3.5E-34 220.7 33.3 273 16-307 6-283 (289)
34 KOG0318 WD40 repeat stress pro 100.0 2.9E-29 6.2E-34 221.9 32.8 310 9-334 135-525 (603)
35 KOG0291 WD40-repeat-containing 100.0 9.5E-30 2.1E-34 233.2 30.6 252 17-274 348-613 (893)
36 KOG0645 WD40 repeat protein [G 100.0 9.1E-29 2E-33 202.5 30.0 269 15-307 10-303 (312)
37 KOG0292 Vesicle coat complex C 100.0 8.4E-30 1.8E-34 237.0 23.4 276 17-307 7-314 (1202)
38 KOG0263 Transcription initiati 100.0 6E-30 1.3E-34 236.1 21.8 229 16-303 448-703 (707)
39 KOG0278 Serine/threonine kinas 100.0 8.5E-31 1.9E-35 212.1 13.6 242 16-276 56-300 (334)
40 KOG0643 Translation initiation 100.0 5.8E-29 1.3E-33 203.3 23.5 277 16-307 7-309 (327)
41 KOG0319 WD40-repeat-containing 100.0 4.2E-29 9.2E-34 228.6 25.0 276 17-307 321-611 (775)
42 KOG0283 WD40 repeat-containing 100.0 1.7E-29 3.7E-34 234.7 22.5 246 13-273 261-576 (712)
43 KOG0284 Polyadenylation factor 100.0 1.7E-30 3.7E-35 223.2 14.4 248 8-273 127-380 (464)
44 KOG0276 Vesicle coat complex C 100.0 3.8E-28 8.3E-33 218.7 27.0 272 18-307 12-291 (794)
45 KOG0319 WD40-repeat-containing 100.0 1.7E-28 3.7E-33 224.6 24.3 273 22-307 284-569 (775)
46 KOG0306 WD40-repeat-containing 100.0 2.7E-28 5.9E-33 223.6 25.5 274 16-306 370-655 (888)
47 KOG0266 WD40 repeat-containing 100.0 2.8E-28 6E-33 228.2 26.3 246 16-273 200-454 (456)
48 KOG0645 WD40 repeat protein [G 100.0 1.5E-27 3.2E-32 195.4 24.1 242 16-273 58-311 (312)
49 KOG1407 WD40 repeat protein [F 100.0 5.1E-27 1.1E-31 191.3 27.0 287 17-326 18-311 (313)
50 KOG0277 Peroxisomal targeting 100.0 2.4E-28 5.2E-33 198.4 18.0 231 16-307 57-300 (311)
51 KOG0310 Conserved WD40 repeat- 100.0 5.9E-27 1.3E-31 205.7 24.8 268 19-307 26-301 (487)
52 KOG0295 WD40 repeat-containing 100.0 1.6E-27 3.4E-32 202.4 20.0 235 57-307 105-356 (406)
53 KOG0265 U5 snRNP-specific prot 100.0 3.7E-27 8.1E-32 195.6 21.2 241 15-270 86-335 (338)
54 KOG0268 Sof1-like rRNA process 100.0 8.1E-28 1.8E-32 204.1 16.8 269 16-307 63-337 (433)
55 KOG0299 U3 snoRNP-associated p 100.0 1.4E-26 3E-31 202.0 24.3 299 7-317 130-457 (479)
56 KOG0275 Conserved WD40 repeat- 100.0 1.6E-27 3.5E-32 199.8 17.5 276 19-307 213-501 (508)
57 KOG0643 Translation initiation 100.0 4.2E-27 9.1E-32 192.4 19.5 261 9-273 40-317 (327)
58 KOG0293 WD40 repeat-containing 100.0 3.9E-27 8.4E-32 202.9 18.4 246 13-274 263-514 (519)
59 PTZ00421 coronin; Provisional 100.0 1.3E-25 2.9E-30 209.9 28.3 267 18-298 19-316 (493)
60 KOG1407 WD40 repeat protein [F 99.9 1.6E-26 3.5E-31 188.5 18.6 241 54-313 14-265 (313)
61 KOG0281 Beta-TrCP (transducin 99.9 8.1E-27 1.8E-31 197.1 14.8 237 59-333 196-434 (499)
62 PLN00181 protein SPA1-RELATED; 99.9 6.2E-25 1.3E-29 219.6 30.7 248 19-272 532-792 (793)
63 PTZ00421 coronin; Provisional 99.9 8.4E-25 1.8E-29 204.5 29.1 203 16-222 72-292 (493)
64 KOG0310 Conserved WD40 repeat- 99.9 1.1E-25 2.4E-30 197.7 20.6 237 17-273 66-309 (487)
65 KOG0285 Pleiotropic regulator 99.9 1.8E-25 3.9E-30 189.6 20.3 235 58-314 149-394 (460)
66 KOG0282 mRNA splicing factor [ 99.9 6.8E-26 1.5E-30 198.8 18.2 242 16-271 255-503 (503)
67 KOG0973 Histone transcription 99.9 5E-25 1.1E-29 210.0 25.3 276 19-307 13-347 (942)
68 PTZ00420 coronin; Provisional 99.9 2.5E-24 5.4E-29 202.6 29.1 226 16-298 71-319 (568)
69 KOG0296 Angio-associated migra 99.9 1.6E-24 3.5E-29 184.2 24.7 282 16-312 61-359 (399)
70 KOG0274 Cdc4 and related F-box 99.9 2.6E-24 5.6E-29 201.8 27.3 261 18-305 207-472 (537)
71 KOG0772 Uncharacterized conser 99.9 8.9E-25 1.9E-29 193.2 22.5 290 8-307 156-479 (641)
72 KOG0305 Anaphase promoting com 99.9 9.8E-25 2.1E-29 198.1 22.8 243 13-274 211-462 (484)
73 KOG0316 Conserved WD40 repeat- 99.9 1.9E-24 4.1E-29 174.0 21.1 248 53-333 10-264 (307)
74 cd00200 WD40 WD40 domain, foun 99.9 1.6E-23 3.6E-28 182.6 28.7 237 16-271 48-289 (289)
75 KOG2096 WD40 repeat protein [G 99.9 8.8E-24 1.9E-28 177.0 25.1 279 14-305 81-393 (420)
76 KOG0275 Conserved WD40 repeat- 99.9 1.6E-25 3.4E-30 187.9 13.9 237 18-271 262-507 (508)
77 KOG0292 Vesicle coat complex C 99.9 1.9E-23 4.1E-28 195.1 27.7 276 16-304 48-384 (1202)
78 KOG0264 Nucleosome remodeling 99.9 4.4E-24 9.6E-29 186.3 21.2 234 16-307 121-395 (422)
79 KOG0277 Peroxisomal targeting 99.9 1.7E-24 3.7E-29 176.0 17.2 225 23-308 12-257 (311)
80 KOG0289 mRNA splicing factor [ 99.9 1.6E-23 3.6E-28 181.7 24.0 277 14-307 214-498 (506)
81 KOG0305 Anaphase promoting com 99.9 2.6E-23 5.6E-28 188.9 26.5 274 24-327 182-462 (484)
82 KOG0308 Conserved WD40 repeat- 99.9 1.3E-24 2.8E-29 196.9 17.0 231 19-307 21-277 (735)
83 KOG0640 mRNA cleavage stimulat 99.9 6.2E-24 1.3E-28 177.3 19.5 280 17-305 110-416 (430)
84 KOG0274 Cdc4 and related F-box 99.9 1.3E-23 2.7E-28 197.1 23.8 242 16-281 246-490 (537)
85 KOG0313 Microtubule binding pr 99.9 1.4E-23 3.1E-28 179.3 20.8 240 15-273 140-418 (423)
86 KOG0283 WD40 repeat-containing 99.9 1.6E-23 3.6E-28 195.1 22.1 235 58-306 265-567 (712)
87 KOG0639 Transducin-like enhanc 99.9 1.3E-23 2.9E-28 185.3 19.1 270 17-307 417-696 (705)
88 KOG0294 WD40 repeat-containing 99.9 2.7E-22 5.7E-27 167.9 25.5 251 33-307 3-273 (362)
89 KOG0288 WD40 repeat protein Ti 99.9 4.1E-24 8.8E-29 184.4 14.4 238 17-270 217-458 (459)
90 KOG0294 WD40 repeat-containing 99.9 2.1E-22 4.5E-27 168.5 24.1 254 16-293 40-305 (362)
91 KOG0300 WD40 repeat-containing 99.9 3.6E-23 7.9E-28 173.3 19.4 273 16-307 145-468 (481)
92 KOG0641 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 157.2 27.2 273 18-307 31-341 (350)
93 PTZ00420 coronin; Provisional 99.9 1E-21 2.2E-26 185.1 30.0 214 37-307 50-285 (568)
94 KOG1332 Vesicle coat complex C 99.9 6.6E-23 1.4E-27 166.0 18.5 254 58-335 9-296 (299)
95 KOG1274 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 184.2 29.3 275 10-304 4-289 (933)
96 KOG0301 Phospholipase A2-activ 99.9 5.1E-22 1.1E-26 181.3 25.3 261 16-307 11-280 (745)
97 KOG0772 Uncharacterized conser 99.9 7.4E-23 1.6E-27 181.1 19.1 249 11-270 206-484 (641)
98 KOG1408 WD40 repeat protein [F 99.9 1.1E-21 2.3E-26 179.8 26.3 279 23-326 328-713 (1080)
99 KOG0276 Vesicle coat complex C 99.9 2E-22 4.3E-27 182.0 20.9 233 57-307 10-249 (794)
100 KOG0306 WD40-repeat-containing 99.9 1.4E-21 3.1E-26 179.9 25.8 271 19-307 320-614 (888)
101 KOG0641 WD40 repeat protein [G 99.9 3.6E-21 7.9E-26 154.4 24.7 240 17-272 87-348 (350)
102 KOG0300 WD40 repeat-containing 99.9 1.4E-22 3.1E-27 169.8 17.2 244 16-275 187-478 (481)
103 KOG1539 WD repeat protein [Gen 99.9 6.8E-22 1.5E-26 183.8 23.2 287 7-307 230-598 (910)
104 KOG0640 mRNA cleavage stimulat 99.9 1.4E-22 3E-27 169.3 16.5 246 16-273 169-426 (430)
105 KOG0289 mRNA splicing factor [ 99.9 9.6E-22 2.1E-26 170.8 22.2 243 16-272 258-505 (506)
106 KOG0299 U3 snoRNP-associated p 99.9 9.6E-22 2.1E-26 171.9 21.8 250 5-271 190-454 (479)
107 KOG1063 RNA polymerase II elon 99.9 2.6E-21 5.7E-26 176.7 25.4 292 14-328 262-650 (764)
108 KOG1332 Vesicle coat complex C 99.9 4.2E-22 9.2E-27 161.3 17.2 247 14-273 6-286 (299)
109 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.7E-20 1E-24 163.6 31.3 275 32-330 2-283 (300)
110 KOG2055 WD40 repeat protein [G 99.9 7.1E-21 1.5E-25 166.6 25.1 286 13-325 207-511 (514)
111 KOG0321 WD40 repeat-containing 99.9 2.4E-21 5.1E-26 175.5 22.8 294 23-336 53-402 (720)
112 KOG2048 WD40 repeat protein [G 99.9 3.1E-20 6.7E-25 169.4 29.0 268 19-305 25-309 (691)
113 KOG1446 Histone H3 (Lys4) meth 99.9 2.6E-20 5.5E-25 156.3 26.2 231 59-307 13-254 (311)
114 KOG2445 Nuclear pore complex c 99.9 8.8E-21 1.9E-25 158.4 22.9 248 15-307 9-310 (361)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6E-20 1.3E-24 162.9 28.9 258 20-295 31-300 (300)
116 KOG0646 WD40 repeat protein [G 99.9 2.7E-21 5.9E-26 169.4 19.4 260 33-298 52-332 (476)
117 KOG4283 Transcription-coupled 99.9 1.3E-20 2.8E-25 156.6 21.8 286 9-307 33-357 (397)
118 KOG0267 Microtubule severing p 99.9 3.6E-22 7.7E-27 183.1 11.1 233 18-309 27-262 (825)
119 KOG0301 Phospholipase A2-activ 99.9 1.7E-20 3.7E-25 171.4 21.1 234 13-273 51-288 (745)
120 KOG2106 Uncharacterized conser 99.9 3.4E-19 7.3E-24 157.7 28.5 257 20-306 247-512 (626)
121 KOG2106 Uncharacterized conser 99.9 6.7E-19 1.5E-23 155.9 29.5 273 19-327 200-478 (626)
122 KOG0973 Histone transcription 99.9 3.7E-20 8.1E-25 177.0 22.2 244 16-274 66-356 (942)
123 KOG0268 Sof1-like rRNA process 99.9 3.7E-21 8E-26 163.8 13.5 226 56-307 62-294 (433)
124 KOG0269 WD40 repeat-containing 99.9 5.7E-21 1.2E-25 176.5 15.4 259 4-276 65-343 (839)
125 KOG0642 Cell-cycle nuclear pro 99.9 5.5E-21 1.2E-25 171.1 14.6 253 17-285 292-573 (577)
126 KOG1539 WD repeat protein [Gen 99.9 1.8E-19 3.9E-24 167.8 24.3 274 15-307 284-639 (910)
127 KOG0264 Nucleosome remodeling 99.9 2.8E-20 6.2E-25 162.6 17.7 212 16-273 174-404 (422)
128 KOG1274 WD40 repeat protein [G 99.9 4.2E-19 9.1E-24 167.0 26.3 249 57-327 10-263 (933)
129 KOG0308 Conserved WD40 repeat- 99.9 1.6E-20 3.5E-25 170.5 16.2 241 16-273 70-327 (735)
130 KOG0269 WD40 repeat-containing 99.9 3.9E-20 8.5E-25 171.0 18.5 271 20-306 40-331 (839)
131 KOG0650 WD40 repeat nucleolar 99.9 4.1E-19 9E-24 160.1 24.1 274 15-307 396-727 (733)
132 KOG0321 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 163.3 21.5 246 17-274 98-392 (720)
133 KOG0302 Ribosome Assembly prot 99.8 1.2E-19 2.6E-24 155.3 18.4 234 17-307 149-431 (440)
134 KOG2919 Guanine nucleotide-bin 99.8 7.1E-19 1.5E-23 148.0 22.3 293 2-307 28-362 (406)
135 KOG0647 mRNA export protein (c 99.8 7.9E-19 1.7E-23 146.4 22.4 231 16-261 69-311 (347)
136 KOG1063 RNA polymerase II elon 99.8 5.2E-19 1.1E-23 161.8 23.2 289 16-307 188-594 (764)
137 KOG0307 Vesicle coat complex C 99.8 3.6E-20 7.9E-25 177.9 16.3 283 23-328 10-329 (1049)
138 KOG2096 WD40 repeat protein [G 99.8 6.5E-19 1.4E-23 148.0 20.3 265 56-334 82-385 (420)
139 KOG0639 Transducin-like enhanc 99.8 1.1E-19 2.4E-24 160.6 16.5 236 55-307 414-655 (705)
140 KOG4328 WD40 protein [Function 99.8 1.7E-18 3.8E-23 151.6 22.3 282 16-306 183-485 (498)
141 KOG0322 G-protein beta subunit 99.8 2.3E-19 5.1E-24 147.0 15.2 293 6-325 2-322 (323)
142 KOG2048 WD40 repeat protein [G 99.8 1.6E-17 3.6E-22 151.8 28.2 204 8-214 58-271 (691)
143 KOG4283 Transcription-coupled 99.8 1.4E-18 3E-23 144.6 18.2 247 13-273 95-365 (397)
144 KOG1273 WD40 repeat protein [G 99.8 5.7E-18 1.2E-22 142.1 22.0 275 22-305 26-313 (405)
145 KOG1408 WD40 repeat protein [F 99.8 1.3E-18 2.8E-23 159.8 19.1 241 18-273 458-713 (1080)
146 KOG1036 Mitotic spindle checkp 99.8 1.1E-17 2.4E-22 140.0 22.7 232 16-263 51-294 (323)
147 KOG0270 WD40 repeat-containing 99.8 1.5E-18 3.2E-23 151.5 17.7 232 31-278 192-454 (463)
148 KOG1538 Uncharacterized conser 99.8 4.4E-18 9.6E-23 155.3 21.0 263 21-307 14-285 (1081)
149 KOG4378 Nuclear protein COP1 [ 99.8 3.6E-18 7.7E-23 151.0 19.5 276 12-305 27-312 (673)
150 KOG1034 Transcriptional repres 99.8 2.1E-18 4.5E-23 145.5 16.5 248 17-273 87-383 (385)
151 KOG4328 WD40 protein [Function 99.8 3.8E-18 8.2E-23 149.5 17.9 258 4-273 219-495 (498)
152 KOG0644 Uncharacterized conser 99.8 5E-19 1.1E-23 164.9 12.1 262 17-304 188-457 (1113)
153 KOG2055 WD40 repeat protein [G 99.8 6.4E-18 1.4E-22 148.2 18.2 248 60-322 213-472 (514)
154 KOG1445 Tumor-specific antigen 99.8 1.5E-17 3.2E-22 151.1 20.4 162 13-176 73-250 (1012)
155 KOG1009 Chromatin assembly com 99.8 2.9E-17 6.2E-22 142.1 20.1 276 19-307 13-364 (434)
156 KOG4227 WD40 repeat protein [G 99.8 5.4E-17 1.2E-21 140.0 21.5 280 16-305 53-377 (609)
157 KOG4378 Nuclear protein COP1 [ 99.8 2.4E-17 5.3E-22 145.8 18.6 259 36-312 7-283 (673)
158 KOG1034 Transcriptional repres 99.8 7.7E-17 1.7E-21 136.1 19.2 283 13-307 32-375 (385)
159 KOG0267 Microtubule severing p 99.8 8.4E-19 1.8E-23 161.2 7.9 187 16-209 67-259 (825)
160 KOG0646 WD40 repeat protein [G 99.8 1.2E-16 2.7E-21 140.4 20.3 220 19-254 81-330 (476)
161 KOG0270 WD40 repeat-containing 99.7 6.3E-17 1.4E-21 141.4 16.4 202 15-222 239-451 (463)
162 KOG0290 Conserved WD40 repeat- 99.7 3.6E-16 7.8E-21 130.1 20.0 273 21-307 46-358 (364)
163 KOG0303 Actin-binding protein 99.7 2.8E-16 6.1E-21 135.6 18.5 206 13-222 75-296 (472)
164 COG2319 FOG: WD40 repeat [Gene 99.7 1.8E-14 4E-19 132.1 31.8 273 14-304 60-347 (466)
165 KOG0771 Prolactin regulatory e 99.7 4.2E-15 9E-20 129.5 22.1 199 104-327 148-355 (398)
166 KOG1334 WD40 repeat protein [G 99.7 3.2E-16 6.8E-21 138.6 15.2 279 15-304 138-455 (559)
167 KOG0302 Ribosome Assembly prot 99.7 1.9E-16 4E-21 136.0 13.3 159 16-176 208-380 (440)
168 KOG1963 WD40 repeat protein [G 99.7 2.8E-14 6.1E-19 134.5 28.7 284 17-306 203-530 (792)
169 KOG1273 WD40 repeat protein [G 99.7 2.6E-15 5.5E-20 126.4 19.5 244 16-273 62-322 (405)
170 KOG1517 Guanine nucleotide bin 99.7 2.2E-15 4.7E-20 144.2 21.5 260 7-275 1097-1383(1387)
171 PRK11028 6-phosphogluconolacto 99.7 6.7E-14 1.5E-18 126.4 30.1 276 34-326 5-304 (330)
172 KOG1188 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 128.9 17.5 252 10-273 59-346 (376)
173 KOG1007 WD repeat protein TSSC 99.7 5.7E-15 1.2E-19 122.9 20.3 177 18-199 62-269 (370)
174 KOG0642 Cell-cycle nuclear pro 99.7 4.3E-16 9.2E-21 140.0 14.7 247 55-307 289-553 (577)
175 KOG0307 Vesicle coat complex C 99.7 2.5E-16 5.3E-21 151.9 14.0 241 19-275 64-329 (1049)
176 KOG2110 Uncharacterized conser 99.7 5.2E-14 1.1E-18 120.9 26.1 243 62-335 7-256 (391)
177 KOG1310 WD40 repeat protein [G 99.7 6.9E-16 1.5E-20 138.3 15.3 160 16-175 47-232 (758)
178 KOG1517 Guanine nucleotide bin 99.7 4.3E-15 9.3E-20 142.2 21.1 272 23-306 1068-1372(1387)
179 COG2319 FOG: WD40 repeat [Gene 99.7 7.4E-13 1.6E-17 121.4 33.9 271 16-305 152-432 (466)
180 KOG1538 Uncharacterized conser 99.7 5E-15 1.1E-19 135.6 17.6 235 16-273 50-293 (1081)
181 KOG1524 WD40 repeat-containing 99.7 5.6E-15 1.2E-19 132.2 17.3 259 16-307 11-278 (737)
182 PRK01742 tolB translocation pr 99.6 1.1E-14 2.3E-19 136.0 18.7 235 39-296 182-426 (429)
183 KOG1587 Cytoplasmic dynein int 99.6 1.3E-13 2.9E-18 129.1 25.4 272 40-334 221-524 (555)
184 KOG1445 Tumor-specific antigen 99.6 2.4E-15 5.3E-20 136.9 13.1 159 19-177 627-801 (1012)
185 KOG2445 Nuclear pore complex c 99.6 6.9E-14 1.5E-18 117.5 20.5 209 96-307 9-249 (361)
186 KOG1587 Cytoplasmic dynein int 99.6 2.1E-13 4.5E-18 127.9 23.7 246 15-273 238-516 (555)
187 KOG0650 WD40 repeat nucleolar 99.6 3.8E-14 8.1E-19 128.4 16.7 237 56-308 396-673 (733)
188 KOG0303 Actin-binding protein 99.6 4E-14 8.7E-19 122.4 16.1 224 58-296 79-320 (472)
189 PRK11028 6-phosphogluconolacto 99.6 5.2E-12 1.1E-16 114.1 30.4 245 19-273 34-304 (330)
190 KOG1188 WD40 repeat protein [G 99.6 8.8E-14 1.9E-18 118.3 17.0 180 113-303 41-231 (376)
191 KOG0649 WD40 repeat protein [G 99.6 8.9E-13 1.9E-17 107.5 21.4 257 21-303 12-303 (325)
192 KOG2919 Guanine nucleotide-bin 99.6 2.9E-13 6.4E-18 114.5 17.6 232 19-264 104-361 (406)
193 KOG0290 Conserved WD40 repeat- 99.5 8.9E-13 1.9E-17 110.1 18.6 234 17-263 94-356 (364)
194 KOG1007 WD repeat protein TSSC 99.5 1.3E-12 2.7E-17 109.1 17.3 159 14-176 118-291 (370)
195 KOG1009 Chromatin assembly com 99.5 1.3E-12 2.8E-17 113.6 18.1 115 16-130 62-195 (434)
196 KOG1963 WD40 repeat protein [G 99.5 9.1E-12 2E-16 117.8 25.2 267 24-306 21-313 (792)
197 KOG1523 Actin-related protein 99.5 2.1E-12 4.6E-17 109.1 18.8 244 19-303 10-267 (361)
198 KOG0771 Prolactin regulatory e 99.5 3E-13 6.5E-18 118.1 14.1 189 23-214 148-350 (398)
199 KOG2394 WD40 protein DMR-N9 [G 99.5 1.2E-11 2.6E-16 111.2 23.8 191 74-295 188-384 (636)
200 PRK01742 tolB translocation pr 99.5 1.4E-12 3.1E-17 121.8 18.6 188 17-213 201-396 (429)
201 KOG1240 Protein kinase contain 99.5 6.2E-12 1.3E-16 122.6 23.0 257 16-277 1045-1338(1431)
202 KOG2110 Uncharacterized conser 99.5 3.2E-11 6.8E-16 104.0 24.7 239 17-273 3-248 (391)
203 PRK03629 tolB translocation pr 99.5 8.7E-12 1.9E-16 116.4 23.1 235 41-295 179-427 (429)
204 KOG1524 WD40 repeat-containing 99.5 7.2E-13 1.6E-17 118.9 14.5 179 16-213 101-281 (737)
205 KOG2111 Uncharacterized conser 99.5 3.2E-11 7E-16 102.1 23.3 229 62-305 7-246 (346)
206 KOG0649 WD40 repeat protein [G 99.5 1.1E-11 2.4E-16 101.2 19.1 165 7-177 49-238 (325)
207 KOG1523 Actin-related protein 99.5 2.1E-12 4.5E-17 109.2 14.9 196 101-305 11-226 (361)
208 PF08662 eIF2A: Eukaryotic tra 99.5 4.1E-12 8.8E-17 105.3 16.6 139 167-326 38-179 (194)
209 KOG3881 Uncharacterized conser 99.5 1E-11 2.2E-16 107.6 18.5 258 19-296 55-342 (412)
210 PRK04922 tolB translocation pr 99.4 5.4E-11 1.2E-15 111.4 23.1 235 41-295 184-432 (433)
211 KOG4227 WD40 repeat protein [G 99.4 2.1E-11 4.6E-16 105.7 18.4 245 16-272 102-386 (609)
212 PRK05137 tolB translocation pr 99.4 1.2E-10 2.6E-15 109.1 24.9 234 41-295 182-432 (435)
213 KOG1310 WD40 repeat protein [G 99.4 4E-12 8.8E-17 114.5 13.9 118 57-176 47-180 (758)
214 KOG2111 Uncharacterized conser 99.4 5.6E-10 1.2E-14 94.7 25.5 239 21-274 7-257 (346)
215 PRK02889 tolB translocation pr 99.4 4.8E-11 1.1E-15 111.4 21.3 237 41-295 176-424 (427)
216 KOG2321 WD40 repeat protein [G 99.4 4.8E-11 1E-15 108.2 20.1 241 17-273 49-343 (703)
217 KOG2139 WD40 repeat protein [G 99.4 9.7E-11 2.1E-15 100.8 21.0 186 16-207 95-299 (445)
218 KOG4497 Uncharacterized conser 99.4 1.6E-11 3.5E-16 104.4 14.7 221 24-271 13-238 (447)
219 PRK05137 tolB translocation pr 99.4 2.1E-10 4.5E-15 107.6 23.3 205 82-306 183-397 (435)
220 KOG2394 WD40 protein DMR-N9 [G 99.4 9.3E-12 2E-16 111.9 12.6 185 110-336 183-372 (636)
221 PRK04922 tolB translocation pr 99.3 2E-10 4.3E-15 107.6 21.4 205 82-306 185-399 (433)
222 PRK02889 tolB translocation pr 99.3 1.6E-10 3.4E-15 108.0 19.9 206 82-307 177-392 (427)
223 KOG1240 Protein kinase contain 99.3 5.8E-10 1.2E-14 109.2 23.1 224 46-281 1034-1281(1431)
224 PF02239 Cytochrom_D1: Cytochr 99.3 1.1E-08 2.3E-13 93.3 30.4 288 23-327 40-348 (369)
225 KOG4497 Uncharacterized conser 99.3 8E-10 1.7E-14 94.2 20.0 266 17-307 89-424 (447)
226 KOG0644 Uncharacterized conser 99.3 8.8E-12 1.9E-16 117.2 9.0 226 54-306 184-416 (1113)
227 KOG1272 WD40-repeat-containing 99.3 2.1E-11 4.6E-16 107.9 10.8 264 18-304 128-398 (545)
228 PRK03629 tolB translocation pr 99.3 1.1E-09 2.3E-14 102.4 21.6 195 18-219 197-405 (429)
229 KOG0974 WD-repeat protein WDR6 99.2 6.3E-10 1.4E-14 107.4 17.8 154 18-174 86-246 (967)
230 KOG0974 WD-repeat protein WDR6 99.2 5.2E-11 1.1E-15 114.6 10.3 115 15-130 171-288 (967)
231 KOG1334 WD40 repeat protein [G 99.2 3.8E-10 8.2E-15 100.6 14.5 243 58-306 140-415 (559)
232 PRK00178 tolB translocation pr 99.2 6.8E-09 1.5E-13 97.3 23.4 234 42-295 180-427 (430)
233 TIGR02800 propeller_TolB tol-p 99.2 6.7E-09 1.5E-13 96.9 23.0 114 18-131 188-311 (417)
234 KOG4547 WD40 repeat-containing 99.2 8.2E-10 1.8E-14 100.7 15.7 181 110-305 3-209 (541)
235 PF08662 eIF2A: Eukaryotic tra 99.2 9.2E-10 2E-14 91.3 14.9 109 19-130 59-179 (194)
236 TIGR02800 propeller_TolB tol-p 99.2 5.6E-09 1.2E-13 97.5 21.6 206 82-307 171-386 (417)
237 PRK04792 tolB translocation pr 99.2 9.8E-09 2.1E-13 96.4 22.9 234 42-295 199-446 (448)
238 KOG2139 WD40 repeat protein [G 99.1 4.5E-09 9.8E-14 90.7 17.1 186 102-305 100-300 (445)
239 KOG0322 G-protein beta subunit 99.1 4E-10 8.7E-15 93.2 9.9 152 20-173 151-322 (323)
240 KOG1272 WD40-repeat-containing 99.1 2.1E-10 4.5E-15 101.7 8.6 198 8-210 197-401 (545)
241 KOG2315 Predicted translation 99.1 1.4E-08 3.1E-13 92.2 20.4 288 12-323 67-395 (566)
242 PF10282 Lactonase: Lactonase, 99.1 1.7E-06 3.7E-11 78.6 33.5 278 34-326 2-322 (345)
243 PF02239 Cytochrom_D1: Cytochr 99.1 6.2E-08 1.3E-12 88.3 22.5 268 32-304 6-287 (369)
244 KOG1354 Serine/threonine prote 99.1 1.2E-08 2.6E-13 87.6 16.5 249 19-274 25-360 (433)
245 PRK01029 tolB translocation pr 99.1 7.9E-08 1.7E-12 89.7 23.1 243 41-297 165-426 (428)
246 PRK04792 tolB translocation pr 99.0 3.9E-08 8.5E-13 92.4 20.9 205 82-306 199-413 (448)
247 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.2E-07 6.9E-12 82.2 25.5 229 26-281 52-338 (352)
248 PRK01029 tolB translocation pr 99.0 8.9E-08 1.9E-12 89.3 22.8 209 82-305 166-390 (428)
249 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.7E-06 3.7E-11 77.6 28.7 250 41-304 27-318 (352)
250 PRK00178 tolB translocation pr 99.0 1.1E-07 2.3E-12 89.3 22.2 197 17-220 196-406 (430)
251 KOG3881 Uncharacterized conser 99.0 4.2E-08 9.1E-13 85.5 17.5 233 59-306 54-311 (412)
252 KOG2314 Translation initiation 99.0 3.6E-07 7.9E-12 83.2 22.8 267 17-306 247-558 (698)
253 KOG2041 WD40 repeat protein [G 99.0 1.1E-07 2.3E-12 89.0 19.6 274 12-305 7-328 (1189)
254 KOG4532 WD40-like repeat conta 98.9 3E-07 6.4E-12 76.7 19.4 200 24-224 72-286 (344)
255 KOG0280 Uncharacterized conser 98.9 1.8E-07 3.9E-12 78.9 15.9 178 19-201 69-266 (339)
256 PLN02919 haloacid dehalogenase 98.9 5.2E-06 1.1E-10 85.5 30.0 242 23-305 571-878 (1057)
257 KOG1409 Uncharacterized conser 98.8 2.5E-07 5.5E-12 79.6 16.5 155 19-176 68-272 (404)
258 TIGR03300 assembly_YfgL outer 98.8 1.4E-06 3E-11 80.3 22.9 254 30-306 104-370 (377)
259 KOG2321 WD40 repeat protein [G 98.8 6.8E-08 1.5E-12 88.2 13.2 165 4-174 158-343 (703)
260 PF10282 Lactonase: Lactonase, 98.8 2.6E-05 5.7E-10 70.8 30.4 250 20-277 37-328 (345)
261 KOG1354 Serine/threonine prote 98.8 5E-08 1.1E-12 83.9 10.6 200 100-305 25-292 (433)
262 COG2706 3-carboxymuconate cycl 98.8 7.2E-05 1.6E-09 65.3 29.9 262 40-305 15-310 (346)
263 KOG3914 WD repeat protein WDR4 98.8 2E-07 4.3E-12 81.8 14.2 156 21-179 64-228 (390)
264 COG2706 3-carboxymuconate cycl 98.7 1.4E-05 3E-10 69.7 23.4 216 80-305 15-263 (346)
265 COG5170 CDC55 Serine/threonine 98.7 5.2E-07 1.1E-11 76.8 14.1 244 18-305 25-357 (460)
266 KOG0309 Conserved WD40 repeat- 98.7 2.9E-07 6.2E-12 86.5 12.1 272 8-297 13-311 (1081)
267 KOG4190 Uncharacterized conser 98.7 4.1E-08 8.9E-13 89.3 6.4 180 95-282 730-915 (1034)
268 KOG4190 Uncharacterized conser 98.7 5.2E-07 1.1E-11 82.3 13.2 161 16-178 732-910 (1034)
269 TIGR03300 assembly_YfgL outer 98.6 2.1E-05 4.6E-10 72.4 24.1 232 30-281 64-305 (377)
270 KOG4547 WD40 repeat-containing 98.6 4.5E-06 9.8E-11 76.7 18.4 174 28-207 2-208 (541)
271 PF00400 WD40: WD domain, G-be 98.6 1.1E-07 2.4E-12 56.7 5.5 35 94-128 5-39 (39)
272 PF00400 WD40: WD domain, G-be 98.6 8.5E-08 1.8E-12 57.2 4.8 32 16-47 8-39 (39)
273 KOG1409 Uncharacterized conser 98.6 2E-06 4.3E-11 74.3 14.4 241 16-274 21-271 (404)
274 KOG1064 RAVE (regulator of V-A 98.6 5E-07 1.1E-11 92.3 12.2 193 61-282 2209-2407(2439)
275 PF15492 Nbas_N: Neuroblastoma 98.6 2.8E-05 6E-10 65.9 20.5 104 19-122 43-169 (282)
276 PF13360 PQQ_2: PQQ-like domai 98.6 2.9E-05 6.2E-10 66.5 21.6 223 39-279 1-236 (238)
277 PLN02919 haloacid dehalogenase 98.6 3.8E-05 8.3E-10 79.2 25.8 112 20-131 624-771 (1057)
278 PF04762 IKI3: IKI3 family; I 98.6 0.00017 3.8E-09 73.2 29.9 277 17-307 73-448 (928)
279 PRK04043 tolB translocation pr 98.6 1.9E-05 4.2E-10 73.4 21.5 201 82-305 170-387 (419)
280 COG5354 Uncharacterized protei 98.6 0.00012 2.6E-09 66.6 25.1 269 14-304 66-378 (561)
281 KOG3914 WD repeat protein WDR4 98.5 3.6E-07 7.7E-12 80.2 8.8 98 36-134 127-227 (390)
282 PF08450 SGL: SMP-30/Gluconola 98.5 0.00024 5.2E-09 61.3 26.4 230 24-304 4-244 (246)
283 KOG1064 RAVE (regulator of V-A 98.5 1E-06 2.2E-11 90.2 12.3 184 20-222 2209-2400(2439)
284 KOG0280 Uncharacterized conser 98.5 1.8E-06 3.9E-11 73.0 11.5 110 22-131 124-242 (339)
285 COG4946 Uncharacterized protei 98.5 5.9E-05 1.3E-09 68.0 21.2 211 72-304 278-507 (668)
286 COG4946 Uncharacterized protei 98.5 0.00015 3.3E-09 65.5 23.6 125 8-132 348-479 (668)
287 KOG0309 Conserved WD40 repeat- 98.5 2.6E-06 5.6E-11 80.3 12.7 258 12-274 60-340 (1081)
288 KOG4532 WD40-like repeat conta 98.5 7.4E-06 1.6E-10 68.6 13.9 174 112-298 84-263 (344)
289 KOG2041 WD40 repeat protein [G 98.4 6.2E-06 1.4E-10 77.6 14.3 235 61-306 15-279 (1189)
290 PRK04043 tolB translocation pr 98.4 8.8E-05 1.9E-09 69.0 21.7 191 21-220 189-400 (419)
291 PF04762 IKI3: IKI3 family; I 98.4 0.00028 6.1E-09 71.8 26.7 264 18-306 208-507 (928)
292 COG5170 CDC55 Serine/threonine 98.4 3.6E-06 7.9E-11 71.8 10.8 199 100-305 26-300 (460)
293 KOG0882 Cyclophilin-related pe 98.4 4.2E-06 9.1E-11 74.7 11.0 218 57-279 6-237 (558)
294 KOG1832 HIV-1 Vpr-binding prot 98.4 1.1E-06 2.4E-11 84.3 7.5 214 56-300 1097-1316(1516)
295 KOG2315 Predicted translation 98.3 0.0003 6.5E-09 64.7 21.7 195 16-220 162-390 (566)
296 PRK11138 outer membrane biogen 98.3 0.0002 4.3E-09 66.4 21.2 230 31-282 120-362 (394)
297 KOG0882 Cyclophilin-related pe 98.3 5.3E-06 1.2E-10 74.1 9.9 196 98-306 7-222 (558)
298 KOG1920 IkappaB kinase complex 98.3 0.0017 3.6E-08 65.3 27.2 199 19-220 68-322 (1265)
299 COG5354 Uncharacterized protei 98.2 0.00059 1.3E-08 62.3 20.3 261 19-303 32-333 (561)
300 KOG2695 WD40 repeat protein [G 98.2 5.8E-06 1.3E-10 71.5 7.3 142 31-176 225-378 (425)
301 KOG4714 Nucleoporin [Nuclear s 98.2 1.9E-05 4.2E-10 65.9 9.7 147 146-305 91-244 (319)
302 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0018 4E-08 59.0 23.3 100 28-127 1-128 (353)
303 PF15492 Nbas_N: Neuroblastoma 98.1 0.0043 9.4E-08 52.9 23.7 107 101-209 44-168 (282)
304 KOG2114 Vacuolar assembly/sort 98.1 0.0006 1.3E-08 66.0 19.2 205 70-287 34-258 (933)
305 KOG2114 Vacuolar assembly/sort 98.0 0.0021 4.5E-08 62.4 21.8 192 21-220 27-243 (933)
306 KOG1275 PAB-dependent poly(A) 98.0 0.00017 3.8E-09 69.9 14.3 180 74-271 150-340 (1118)
307 KOG1645 RING-finger-containing 97.9 0.0011 2.3E-08 59.0 17.0 80 13-92 187-269 (463)
308 KOG2314 Translation initiation 97.9 0.0058 1.3E-07 56.6 21.7 258 23-305 214-512 (698)
309 KOG4714 Nucleoporin [Nuclear s 97.9 7.5E-05 1.6E-09 62.4 8.8 75 16-90 176-255 (319)
310 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0012 2.6E-08 48.5 14.0 100 22-125 2-109 (111)
311 KOG2066 Vacuolar assembly/sort 97.9 0.0014 3.1E-08 63.0 17.6 142 30-175 82-234 (846)
312 KOG2695 WD40 repeat protein [G 97.8 4.5E-05 9.8E-10 66.1 6.2 115 19-133 252-379 (425)
313 PF13360 PQQ_2: PQQ-like domai 97.8 0.0021 4.6E-08 54.8 16.8 185 28-222 33-232 (238)
314 PF00780 CNH: CNH domain; Int 97.8 0.021 4.6E-07 50.0 24.9 237 28-284 4-266 (275)
315 PF11768 DUF3312: Protein of u 97.7 0.0011 2.3E-08 61.9 14.5 111 19-130 205-329 (545)
316 KOG1920 IkappaB kinase complex 97.7 0.031 6.7E-07 56.6 24.7 228 61-304 69-308 (1265)
317 PRK11138 outer membrane biogen 97.7 0.02 4.3E-07 53.1 22.7 230 30-280 68-319 (394)
318 PF11768 DUF3312: Protein of u 97.7 0.0016 3.5E-08 60.7 14.8 112 60-175 205-330 (545)
319 KOG1912 WD40 repeat protein [G 97.7 0.017 3.6E-07 55.9 21.2 112 16-128 52-184 (1062)
320 PF06433 Me-amine-dh_H: Methyl 97.7 0.019 4.1E-07 51.0 20.2 261 8-283 24-330 (342)
321 KOG1832 HIV-1 Vpr-binding prot 97.6 9.1E-05 2E-09 71.7 6.1 197 94-312 1095-1294(1516)
322 PF08450 SGL: SMP-30/Gluconola 97.6 0.033 7.2E-07 47.9 21.6 178 22-205 42-242 (246)
323 KOG1275 PAB-dependent poly(A) 97.6 0.0025 5.3E-08 62.3 14.5 180 31-218 147-340 (1118)
324 PF07433 DUF1513: Protein of u 97.5 0.057 1.2E-06 47.4 23.5 55 246-303 219-274 (305)
325 KOG1645 RING-finger-containing 97.5 0.012 2.6E-07 52.5 16.5 76 58-134 191-270 (463)
326 KOG3617 WD40 and TPR repeat-co 97.5 0.0057 1.2E-07 59.5 15.3 111 19-130 14-131 (1416)
327 KOG2066 Vacuolar assembly/sort 97.5 0.0023 5E-08 61.6 12.6 145 21-177 41-190 (846)
328 smart00320 WD40 WD40 repeats. 97.4 0.00027 5.8E-09 40.4 4.1 31 17-47 10-40 (40)
329 smart00320 WD40 WD40 repeats. 97.4 0.00043 9.3E-09 39.5 4.6 33 96-128 8-40 (40)
330 KOG1008 Uncharacterized conser 97.4 7.4E-05 1.6E-09 69.8 1.5 168 7-175 90-276 (783)
331 cd00216 PQQ_DH Dehydrogenases 97.3 0.17 3.8E-06 48.3 25.5 49 254-303 405-456 (488)
332 KOG1008 Uncharacterized conser 97.3 0.00029 6.3E-09 66.0 4.1 199 19-221 56-276 (783)
333 KOG1912 WD40 repeat protein [G 97.2 0.0048 1E-07 59.4 11.1 100 33-132 439-553 (1062)
334 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.034 7.4E-07 40.9 13.2 64 103-173 2-70 (111)
335 PF07433 DUF1513: Protein of u 97.1 0.092 2E-06 46.1 18.1 52 24-75 55-113 (305)
336 KOG3617 WD40 and TPR repeat-co 97.1 0.0011 2.3E-08 64.3 6.7 60 246-305 62-121 (1416)
337 PF08553 VID27: VID27 cytoplas 97.1 0.039 8.5E-07 54.8 17.5 129 78-208 501-638 (794)
338 KOG3621 WD40 repeat-containing 97.1 0.005 1.1E-07 58.6 10.9 150 16-166 30-190 (726)
339 KOG3621 WD40 repeat-containing 97.1 0.0051 1.1E-07 58.6 10.1 148 148-304 37-188 (726)
340 PRK02888 nitrous-oxide reducta 97.0 0.037 8.1E-07 53.1 15.7 139 155-305 287-451 (635)
341 COG0823 TolB Periplasmic compo 96.8 0.02 4.3E-07 53.3 12.2 123 167-306 219-346 (425)
342 COG0823 TolB Periplasmic compo 96.7 0.075 1.6E-06 49.5 15.2 194 95-307 187-391 (425)
343 PF08596 Lgl_C: Lethal giant l 96.7 0.45 9.6E-06 44.0 19.9 110 21-130 3-173 (395)
344 KOG2395 Protein involved in va 96.7 0.039 8.5E-07 51.2 12.6 142 30-175 344-501 (644)
345 PF08553 VID27: VID27 cytoplas 96.7 0.061 1.3E-06 53.5 14.7 133 38-174 501-647 (794)
346 KOG4640 Anaphase-promoting com 96.6 0.0097 2.1E-07 56.1 8.0 92 190-295 22-115 (665)
347 PF04841 Vps16_N: Vps16, N-ter 96.5 0.67 1.5E-05 43.2 20.8 54 245-298 218-272 (410)
348 PF03178 CPSF_A: CPSF A subuni 96.5 0.36 7.7E-06 43.4 18.0 150 20-174 27-202 (321)
349 PF12894 Apc4_WD40: Anaphase-p 96.5 0.0074 1.6E-07 37.1 4.7 32 245-277 13-44 (47)
350 PF06977 SdiA-regulated: SdiA- 96.5 0.49 1.1E-05 40.7 18.6 200 96-303 17-239 (248)
351 PF12894 Apc4_WD40: Anaphase-p 96.4 0.014 3E-07 35.9 5.3 33 19-51 11-43 (47)
352 PRK02888 nitrous-oxide reducta 96.1 1.3 2.8E-05 43.0 19.4 75 101-175 321-405 (635)
353 KOG2395 Protein involved in va 96.1 0.38 8.2E-06 45.0 15.2 182 19-207 276-490 (644)
354 KOG2444 WD40 repeat protein [G 95.9 0.025 5.5E-07 46.9 6.5 100 31-130 70-177 (238)
355 KOG4640 Anaphase-promoting com 95.9 0.046 1E-06 51.7 8.9 69 246-326 23-92 (665)
356 PF14583 Pectate_lyase22: Olig 95.7 1.5 3.4E-05 39.9 23.9 88 21-108 37-130 (386)
357 PF04053 Coatomer_WDAD: Coatom 95.6 0.78 1.7E-05 43.1 15.8 156 7-170 21-219 (443)
358 PF00780 CNH: CNH domain; Int 95.6 1.4 3.1E-05 38.3 21.6 144 70-220 6-165 (275)
359 KOG2444 WD40 repeat protein [G 95.6 0.042 9.1E-07 45.6 6.3 96 33-130 32-132 (238)
360 COG3386 Gluconolactonase [Carb 95.4 1.9 4.1E-05 38.4 19.5 108 190-305 164-275 (307)
361 PF04053 Coatomer_WDAD: Coatom 95.2 1.2 2.5E-05 42.0 15.4 133 31-173 117-261 (443)
362 COG3386 Gluconolactonase [Carb 95.2 2.2 4.7E-05 38.1 17.8 153 20-174 66-243 (307)
363 KOG4649 PQQ (pyrrolo-quinoline 95.1 0.9 2E-05 38.8 12.8 127 157-300 24-151 (354)
364 KOG2079 Vacuolar assembly/sort 95.0 0.066 1.4E-06 53.7 6.8 63 242-304 129-194 (1206)
365 KOG4649 PQQ (pyrrolo-quinoline 94.9 2.2 4.8E-05 36.5 14.8 101 31-132 23-125 (354)
366 PF02897 Peptidase_S9_N: Proly 94.8 3.5 7.7E-05 38.4 28.7 196 22-220 126-357 (414)
367 PF03178 CPSF_A: CPSF A subuni 94.7 3.1 6.7E-05 37.3 23.0 133 81-218 62-202 (321)
368 PF10313 DUF2415: Uncharacteri 94.6 0.12 2.5E-06 30.9 4.7 30 245-274 2-34 (43)
369 PF06977 SdiA-regulated: SdiA- 94.5 2.8 6E-05 36.1 19.2 110 20-130 22-147 (248)
370 PRK13616 lipoprotein LpqB; Pro 94.5 1.3 2.9E-05 43.2 14.3 106 21-129 398-524 (591)
371 KOG3630 Nuclear pore complex, 94.5 0.18 3.9E-06 51.1 8.3 133 192-339 104-243 (1405)
372 PRK13616 lipoprotein LpqB; Pro 93.8 7.3 0.00016 38.2 18.3 102 20-126 350-472 (591)
373 PHA02713 hypothetical protein; 93.6 7.6 0.00017 37.9 18.5 23 254-276 512-536 (557)
374 COG3391 Uncharacterized conser 93.5 6.1 0.00013 36.5 20.7 194 23-221 77-284 (381)
375 PF05694 SBP56: 56kDa selenium 93.5 2.4 5.2E-05 39.2 12.9 60 246-305 314-393 (461)
376 PF15390 DUF4613: Domain of un 93.3 5.4 0.00012 38.2 15.1 110 20-129 57-185 (671)
377 PF04841 Vps16_N: Vps16, N-ter 93.2 7.2 0.00016 36.4 27.4 182 25-214 34-242 (410)
378 cd00216 PQQ_DH Dehydrogenases 93.2 8.3 0.00018 36.9 22.8 64 31-94 61-133 (488)
379 KOG4441 Proteins containing BT 93.1 9.3 0.0002 37.4 20.1 225 28-275 282-548 (571)
380 COG3391 Uncharacterized conser 92.9 7.5 0.00016 35.9 24.7 264 21-298 32-311 (381)
381 KOG2377 Uncharacterized conser 92.9 1.2 2.5E-05 41.2 9.9 99 16-115 63-168 (657)
382 PF08596 Lgl_C: Lethal giant l 92.8 8 0.00017 35.9 20.6 196 19-219 86-337 (395)
383 KOG2079 Vacuolar assembly/sort 92.2 0.73 1.6E-05 46.7 8.4 64 19-82 130-198 (1206)
384 KOG1916 Nuclear protein, conta 91.9 0.11 2.4E-06 51.3 2.5 117 12-130 125-265 (1283)
385 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.5 14 0.0003 35.8 24.9 52 254-305 471-524 (527)
386 PF10168 Nup88: Nuclear pore c 90.8 20 0.00043 36.1 20.7 95 16-131 81-180 (717)
387 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.8 17 0.00036 35.3 18.9 106 71-178 69-193 (527)
388 PF02897 Peptidase_S9_N: Proly 90.6 14 0.00031 34.3 25.7 112 65-176 128-262 (414)
389 PF05694 SBP56: 56kDa selenium 90.1 16 0.00035 34.0 14.3 95 39-133 220-345 (461)
390 PF07569 Hira: TUP1-like enhan 89.8 3.3 7.2E-05 34.9 9.3 28 26-53 17-44 (219)
391 KOG4499 Ca2+-binding protein R 89.8 11 0.00025 31.9 14.1 78 103-180 160-247 (310)
392 TIGR02604 Piru_Ver_Nterm putat 89.8 16 0.00035 33.5 16.3 37 265-302 164-200 (367)
393 COG3490 Uncharacterized protei 89.7 13 0.00028 32.5 13.0 53 26-78 120-179 (366)
394 PF14761 HPS3_N: Hermansky-Pud 89.0 6.8 0.00015 32.7 10.2 122 151-274 22-164 (215)
395 PF07569 Hira: TUP1-like enhan 89.0 4 8.6E-05 34.5 9.2 55 251-305 18-86 (219)
396 PF12234 Rav1p_C: RAVE protein 88.8 11 0.00023 37.1 12.9 105 23-129 33-155 (631)
397 KOG1897 Damage-specific DNA bi 88.8 31 0.00066 35.4 27.5 291 20-327 488-816 (1096)
398 KOG2377 Uncharacterized conser 88.6 15 0.00033 34.2 12.9 109 65-175 27-141 (657)
399 COG5167 VID27 Protein involved 88.5 1.9 4.1E-05 40.4 7.2 53 254-306 572-624 (776)
400 PF07676 PD40: WD40-like Beta 88.5 1.1 2.3E-05 26.0 3.9 25 282-306 5-29 (39)
401 PF05096 Glu_cyclase_2: Glutam 88.4 16 0.00034 31.7 15.7 118 53-177 35-160 (264)
402 PF14870 PSII_BNR: Photosynthe 88.3 18 0.00039 32.2 17.9 108 17-125 142-256 (302)
403 PF12234 Rav1p_C: RAVE protein 88.2 26 0.00056 34.6 15.0 94 81-174 51-156 (631)
404 KOG2280 Vacuolar assembly/sort 88.1 30 0.00064 34.4 15.9 52 245-297 218-271 (829)
405 PF10313 DUF2415: Uncharacteri 87.6 3.3 7.3E-05 24.8 5.5 31 20-50 1-34 (43)
406 PF05096 Glu_cyclase_2: Glutam 87.5 18 0.0004 31.3 16.9 112 19-132 44-159 (264)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 87.4 7.6 0.00016 36.2 10.6 102 193-295 6-118 (415)
408 TIGR03074 PQQ_membr_DH membran 87.4 36 0.00078 34.6 21.0 63 31-93 194-282 (764)
409 PF10647 Gmad1: Lipoprotein Lp 87.1 19 0.00041 31.1 13.9 63 245-307 113-187 (253)
410 PF00930 DPPIV_N: Dipeptidyl p 86.4 26 0.00055 31.9 20.6 50 81-131 23-72 (353)
411 COG3490 Uncharacterized protei 85.9 2.7 5.7E-05 36.6 6.2 56 250-305 120-181 (366)
412 KOG4460 Nuclear pore complex, 85.2 10 0.00022 35.9 10.0 107 6-132 80-200 (741)
413 TIGR02276 beta_rpt_yvtn 40-res 84.7 4.3 9.4E-05 23.6 5.3 30 253-282 1-31 (42)
414 PF14870 PSII_BNR: Photosynthe 83.8 31 0.00068 30.7 26.6 224 59-305 15-252 (302)
415 PHA02713 hypothetical protein; 83.2 48 0.001 32.4 17.8 52 254-307 463-523 (557)
416 PF14761 HPS3_N: Hermansky-Pud 83.0 6.9 0.00015 32.6 7.3 49 256-305 29-79 (215)
417 PF08728 CRT10: CRT10; InterP 82.7 55 0.0012 32.8 16.3 106 157-272 115-245 (717)
418 KOG3630 Nuclear pore complex, 82.5 64 0.0014 33.9 14.9 61 245-305 200-263 (1405)
419 PF07995 GSDH: Glucose / Sorbo 81.4 30 0.00065 31.2 11.7 101 21-122 3-135 (331)
420 TIGR02276 beta_rpt_yvtn 40-res 81.3 8.2 0.00018 22.3 5.8 29 29-57 1-30 (42)
421 PF10647 Gmad1: Lipoprotein Lp 81.2 35 0.00075 29.4 12.1 97 21-119 25-130 (253)
422 PF10168 Nup88: Nuclear pore c 80.8 53 0.0012 33.1 13.9 90 186-275 82-181 (717)
423 PF03088 Str_synth: Strictosid 80.5 11 0.00024 26.7 6.8 47 260-307 32-78 (89)
424 PF11715 Nup160: Nucleoporin N 80.4 4.6 9.9E-05 39.3 6.5 37 19-55 214-254 (547)
425 KOG4460 Nuclear pore complex, 79.2 42 0.00091 32.1 11.6 89 189-278 104-203 (741)
426 smart00564 PQQ beta-propeller 78.6 5 0.00011 21.9 3.8 25 256-280 7-31 (33)
427 PLN00033 photosystem II stabil 78.1 59 0.0013 30.2 14.0 107 18-127 279-396 (398)
428 COG5167 VID27 Protein involved 78.0 48 0.001 31.6 11.6 135 36-175 485-633 (776)
429 PF06433 Me-amine-dh_H: Methyl 77.6 54 0.0012 29.6 21.0 195 22-223 97-323 (342)
430 TIGR02604 Piru_Ver_Nterm putat 77.0 60 0.0013 29.7 14.9 100 19-119 13-142 (367)
431 KOG4441 Proteins containing BT 76.5 81 0.0017 31.0 20.5 206 82-307 302-533 (571)
432 PHA03098 kelch-like protein; P 76.4 77 0.0017 30.7 16.9 73 254-334 437-519 (534)
433 PF15390 DUF4613: Domain of un 76.2 80 0.0017 30.7 14.9 129 158-298 74-215 (671)
434 KOG3616 Selective LIM binding 75.1 7.7 0.00017 38.4 6.0 69 100-173 14-82 (1636)
435 PF12657 TFIIIC_delta: Transcr 74.5 32 0.00069 27.7 8.9 30 101-130 86-121 (173)
436 KOG4499 Ca2+-binding protein R 74.0 56 0.0012 27.9 12.3 59 250-308 218-277 (310)
437 PRK10115 protease 2; Provision 73.8 1E+02 0.0023 31.0 27.4 109 63-174 129-255 (686)
438 PF14727 PHTB1_N: PTHB1 N-term 73.3 82 0.0018 29.5 15.3 172 86-271 10-202 (418)
439 PRK10115 protease 2; Provision 73.2 1.1E+02 0.0023 30.9 30.2 194 21-219 128-345 (686)
440 PF08728 CRT10: CRT10; InterP 73.0 81 0.0017 31.7 12.4 111 19-129 100-245 (717)
441 PF11715 Nup160: Nucleoporin N 70.8 7.6 0.00016 37.8 5.2 34 246-279 217-254 (547)
442 PF12768 Rax2: Cortical protei 67.2 80 0.0017 27.8 10.2 88 41-128 16-121 (281)
443 COG4880 Secreted protein conta 66.1 1.2E+02 0.0025 28.4 14.2 154 141-303 422-583 (603)
444 COG4590 ABC-type uncharacteriz 65.6 52 0.0011 30.9 8.8 145 152-305 228-377 (733)
445 PRK13684 Ycf48-like protein; P 64.2 1.1E+02 0.0024 27.6 16.9 157 12-172 165-329 (334)
446 PHA03098 kelch-like protein; P 63.9 1.4E+02 0.0031 28.8 18.8 22 254-275 487-513 (534)
447 PF14781 BBS2_N: Ciliary BBSom 62.9 68 0.0015 24.7 12.7 107 23-129 2-124 (136)
448 PF01011 PQQ: PQQ enzyme repea 62.8 16 0.00035 20.9 3.5 25 258-282 3-27 (38)
449 PF14583 Pectate_lyase22: Olig 62.7 1.3E+02 0.0028 27.8 20.1 235 24-271 85-379 (386)
450 TIGR03606 non_repeat_PQQ dehyd 62.0 1.5E+02 0.0032 28.2 13.0 52 20-71 30-89 (454)
451 PF01436 NHL: NHL repeat; Int 61.7 23 0.00049 18.7 3.9 25 22-46 4-28 (28)
452 KOG1897 Damage-specific DNA bi 61.0 2.1E+02 0.0046 29.8 26.8 115 149-272 492-612 (1096)
453 KOG1983 Tomosyn and related SN 60.3 2.3E+02 0.0051 30.0 16.1 33 19-51 35-67 (993)
454 KOG2247 WD40 repeat-containing 59.5 2.5 5.3E-05 39.5 -0.6 135 155-305 45-179 (615)
455 TIGR02608 delta_60_rpt delta-6 59.2 17 0.00037 23.1 3.4 21 287-307 2-22 (55)
456 PF07995 GSDH: Glucose / Sorbo 57.8 55 0.0012 29.5 7.8 59 246-305 4-72 (331)
457 PF13449 Phytase-like: Esteras 57.4 75 0.0016 28.5 8.6 57 248-305 89-166 (326)
458 PF10584 Proteasome_A_N: Prote 56.5 3.1 6.7E-05 21.2 -0.3 8 292-299 7-14 (23)
459 PF01731 Arylesterase: Arylest 55.5 70 0.0015 22.5 6.5 49 265-326 36-84 (86)
460 KOG3616 Selective LIM binding 55.3 30 0.00064 34.5 5.7 32 19-50 14-45 (1636)
461 TIGR02171 Fb_sc_TIGR02171 Fibr 54.8 49 0.0011 33.9 7.3 58 265-327 329-386 (912)
462 TIGR03606 non_repeat_PQQ dehyd 54.0 93 0.002 29.5 8.7 68 255-323 369-449 (454)
463 PF13570 PQQ_3: PQQ-like domai 53.8 26 0.00056 20.1 3.4 21 254-274 20-40 (40)
464 PF12768 Rax2: Cortical protei 53.7 1.1E+02 0.0023 27.0 8.6 56 14-69 31-97 (281)
465 PF10433 MMS1_N: Mono-function 53.2 2.2E+02 0.0047 27.4 22.1 101 28-128 219-340 (504)
466 PLN00033 photosystem II stabil 52.7 2E+02 0.0043 26.8 17.8 147 20-171 239-396 (398)
467 PF12341 DUF3639: Protein of u 52.6 35 0.00076 18.1 3.8 24 148-171 3-26 (27)
468 PF14655 RAB3GAP2_N: Rab3 GTPa 48.7 32 0.0007 32.1 4.8 42 245-286 309-350 (415)
469 KOG1916 Nuclear protein, conta 48.3 23 0.00049 36.1 3.8 82 199-285 194-282 (1283)
470 COG3292 Predicted periplasmic 48.3 1.3E+02 0.0028 29.3 8.5 122 4-130 357-491 (671)
471 KOG1898 Splicing factor 3b, su 46.8 3.8E+02 0.0082 28.4 15.8 74 143-219 932-1005(1205)
472 KOG2247 WD40 repeat-containing 45.9 2.5 5.5E-05 39.4 -2.7 116 13-131 28-148 (615)
473 PF10214 Rrn6: RNA polymerase 41.9 4E+02 0.0087 27.3 13.1 109 20-131 146-277 (765)
474 KOG3522 Predicted guanine nucl 41.4 1E+02 0.0022 31.3 7.1 62 203-275 638-699 (925)
475 PF01731 Arylesterase: Arylest 41.1 55 0.0012 23.0 4.0 28 246-273 56-84 (86)
476 PF03088 Str_synth: Strictosid 40.0 72 0.0016 22.6 4.5 44 165-211 36-79 (89)
477 PF08954 DUF1900: Domain of un 39.8 1.3E+02 0.0029 23.2 6.3 53 19-71 10-67 (136)
478 PF11635 Med16: Mediator compl 39.4 80 0.0017 32.2 6.4 63 245-307 261-342 (753)
479 PF03022 MRJP: Major royal jel 38.2 1.9E+02 0.0042 25.4 8.0 60 246-305 188-255 (287)
480 COG3823 Glutamine cyclotransfe 36.9 2.6E+02 0.0056 23.6 10.5 52 120-176 109-160 (262)
481 TIGR03118 PEPCTERM_chp_1 conse 35.8 3.3E+02 0.007 24.5 22.9 27 23-49 26-52 (336)
482 PF08309 LVIVD: LVIVD repeat; 35.0 1E+02 0.0022 18.3 5.0 30 150-179 5-34 (42)
483 COG5290 IkappaB kinase complex 34.7 5.3E+02 0.011 26.6 16.2 35 14-48 107-141 (1243)
484 KOG1900 Nuclear pore complex, 34.4 2.1E+02 0.0046 30.8 8.3 68 62-131 180-273 (1311)
485 PF10433 MMS1_N: Mono-function 34.0 4.1E+02 0.009 25.4 10.2 29 246-274 46-74 (504)
486 KOG2280 Vacuolar assembly/sort 32.2 5.6E+02 0.012 26.1 20.1 70 20-91 44-114 (829)
487 PF14269 Arylsulfotran_2: Aryl 31.8 1.3E+02 0.0028 26.8 5.8 39 246-284 146-184 (299)
488 PF10395 Utp8: Utp8 family; I 31.7 5.5E+02 0.012 25.8 15.5 155 19-176 129-307 (670)
489 KOG1520 Predicted alkaloid syn 31.2 4.2E+02 0.0092 24.4 13.5 46 259-305 193-238 (376)
490 PF14781 BBS2_N: Ciliary BBSom 30.2 2.6E+02 0.0056 21.6 13.4 108 158-280 12-132 (136)
491 PF06739 SBBP: Beta-propeller 29.5 1.2E+02 0.0025 17.4 3.8 22 20-41 13-34 (38)
492 PHA02790 Kelch-like protein; P 28.0 5.4E+02 0.012 24.6 15.8 67 254-331 407-475 (480)
493 smart00036 CNH Domain found in 26.6 4.5E+02 0.0098 23.2 25.5 59 30-89 12-73 (302)
494 PF05787 DUF839: Bacterial pro 26.5 2.1E+02 0.0045 27.8 6.6 19 284-302 500-518 (524)
495 PF08801 Nucleoporin_N: Nup133 25.7 5.5E+02 0.012 23.9 13.8 169 64-273 29-219 (422)
496 KOG3522 Predicted guanine nucl 25.6 73 0.0016 32.3 3.3 58 245-305 628-688 (925)
497 COG3204 Uncharacterized protei 25.6 4.8E+02 0.01 23.2 19.4 198 97-305 82-303 (316)
498 KOG4659 Uncharacterized conser 24.9 2E+02 0.0044 31.1 6.2 56 247-302 596-678 (1899)
499 PF14269 Arylsulfotran_2: Aryl 22.6 4.1E+02 0.009 23.6 7.3 37 21-57 145-181 (299)
500 TIGR03074 PQQ_membr_DH membran 21.6 9E+02 0.019 24.9 16.5 148 30-177 259-480 (764)
No 1
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.3e-53 Score=349.59 Aligned_cols=319 Identities=60% Similarity=1.011 Sum_probs=296.3
Q ss_pred CCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEec
Q 019384 10 SGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFS 89 (342)
Q Consensus 10 ~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~ 89 (342)
+..+|-+++.++|.+|.|+|.++.|+.+|+||++|+||+....++.++.|+.++++|+|.++.+.++++.|+.|+++|+.
T Consensus 4 ~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 4 NEFELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred cccccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEec
Confidence 46788899999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred cCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEE
Q 019384 90 HGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVN 169 (342)
Q Consensus 90 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~ 169 (342)
+++...+..|..+|.|+.+++..+.+++||||++|++||.+... ..........|.+++..++.|++|+.+..|.
T Consensus 84 ~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 84 TGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----VVGTFDQGKKVYCMDVSGNRLVVGTSDRKVL 158 (323)
T ss_pred CCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----cccccccCceEEEEeccCCEEEEeecCceEE
Confidence 99999999999999999999988899999999999999988522 2233445568999999999999999999999
Q ss_pred EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384 170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249 (342)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 249 (342)
+||+|+...+.++++..+++++.||++.|++..+++++.+|++.+.++|.++..+.++|++++|++...+....+||+++
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence 99999998888888899999999999999999999999999999999999877788999999999999999999999999
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCC-CCCCCcEEEEEccCC
Q 019384 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDK-PHEPDAIFVRSVNEI 328 (342)
Q Consensus 250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~-~~~~~~~~~~~~~~~ 328 (342)
+|||-.++||||+.||.|.+||..+.+.+.++.+....|.+++|+-||..||+++++--+++.. ..+.+.|+++.+.++
T Consensus 239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~ 318 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTDY 318 (323)
T ss_pred EeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEecccc
Confidence 9999999999999999999999999999999998888899999999999999999988888777 777789999999999
Q ss_pred ccccC
Q 019384 329 EVKPK 333 (342)
Q Consensus 329 ~~~~~ 333 (342)
+.+||
T Consensus 319 e~~pk 323 (323)
T KOG1036|consen 319 ETKPK 323 (323)
T ss_pred ccCCC
Confidence 99987
No 2
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.7e-48 Score=319.57 Aligned_cols=323 Identities=40% Similarity=0.732 Sum_probs=279.8
Q ss_pred CCCCCCccCCCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCC-cee--eeeeecCCceEEEEEeCCCC-eEEEecC
Q 019384 6 PPPTSGRELGNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASA-NVL--RGEFMHGGPVLDCCFHDDSS-GFSASAD 80 (342)
Q Consensus 6 ~~~~~~~~~~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~-~~~--~~~~~h~~~V~~~~~~~~~~-~~s~s~D 80 (342)
..|.++.|+.+++++.|.+|+|||. ...++.+|+||+||+|+++. +.+ .....|.++|.+++|++++. +++|+.|
T Consensus 14 ~~~~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D 93 (347)
T KOG0647|consen 14 ADPNKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD 93 (347)
T ss_pred CCcccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC
Confidence 3689999999999999999999994 45666899999999999976 333 33457999999999996665 5799999
Q ss_pred CcEEEEEeccCceeecccCCcceeEEEEeCCCC--EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384 81 HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAG--QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158 (342)
Q Consensus 81 ~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~ 158 (342)
+.+++||+.++....+..|..+|.+|.|.+... .|+|||+|++||.||+|.... +.....+.++++++..-..
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-----v~t~~LPeRvYa~Dv~~pm 168 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-----VATLQLPERVYAADVLYPM 168 (347)
T ss_pred CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-----eeeeeccceeeehhccCce
Confidence 999999999998888899999999999997554 789999999999999985432 3344567888888887778
Q ss_pred EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA 238 (342)
Q Consensus 159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~ 238 (342)
++.+++++.|.+|+|++......+.+.+++.++.||+++.+.+.+++|+.+|++.+...|.. .+...+.+++|+....
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~--~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP--NPKDNFTFKCHRSTNS 246 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC--CccCceeEEEeccCCC
Confidence 99999999999999998766556667788999999999999999999999999988777763 2367789999997654
Q ss_pred CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCC---C
Q 019384 239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKP---H 315 (342)
Q Consensus 239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~---~ 315 (342)
..+..++|++|+|+|....|+|++.||++.+||-+....+.+.+.|..+|.+.+|+-+|.++|-+.++||..|-+. .
T Consensus 247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~ 326 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQ 326 (347)
T ss_pred CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccccccCCCC
Confidence 4455899999999999999999999999999998887788888899999999999999999999999999888765 6
Q ss_pred CCCcEEEEEccCCccccCCC
Q 019384 316 EPDAIFVRSVNEIEVKPKPK 335 (342)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~ 335 (342)
-++.|+++..++.++||||+
T Consensus 327 ~~~~I~l~~~~~~evK~r~~ 346 (347)
T KOG0647|consen 327 YKPQIFLHPVSTEEVKPRPK 346 (347)
T ss_pred CCCeEEEeeccccccccCCC
Confidence 67799999999999999997
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-43 Score=299.66 Aligned_cols=274 Identities=18% Similarity=0.221 Sum_probs=220.8
Q ss_pred CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc
Q 019384 15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK 92 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~ 92 (342)
.++|.+.|.+++|+|+|.+|||||.|.|+|+||+.++.. .+..+|..-|.|++|+||++. ++|+.||+|++||..++.
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 479999999999999999999999999999999988653 445689999999999988775 599999999999988887
Q ss_pred e--eecccCCcceeEEEEeC-----CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC-eEEEEEc
Q 019384 93 E--DILGKHDAPVRCIEYSY-----AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN-RLVVATA 164 (342)
Q Consensus 93 ~--~~~~~h~~~V~~~~~~~-----~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~-~~~~~s~ 164 (342)
. +.+.+|+..|++++|.| ...+|+|+|.||+|+|||+..+.. .+....|+..|.++.+.|+ .+++++.
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~----~~~lsgHT~~VTCvrwGG~gliySgS~ 266 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC----VRTLSGHTASVTCVRWGGEGLIYSGSQ 266 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE----EEEeccCccceEEEEEcCCceEEecCC
Confidence 4 57899999999999986 456899999999999999864322 2223346778889999754 7899999
Q ss_pred CCeEEEEeCCCCCCcccccccccceeeEEEE-----------EeeCCc-------------------------eEEEEcc
Q 019384 165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVR-----------CYPNGT-------------------------GYALSSV 208 (342)
Q Consensus 165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~-----------~~~~~~-------------------------~~~~~s~ 208 (342)
|++|++|+...+........+.. .++.++ |.|.+. .+++++.
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CceEEEEEccchhHHHhhcccch--heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 99999999887643322222211 122222 233333 3888888
Q ss_pred CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce
Q 019384 209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI 288 (342)
Q Consensus 209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V 288 (342)
|.++ .+|+....++.. ..+.+|++ -|+.+.||||++++|++|-|.+|++||.++++.+.+|.+|...|
T Consensus 345 d~tl--flW~p~~~kkpi-~rmtgHq~---------lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 345 DFTL--FLWNPFKSKKPI-TRMTGHQA---------LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred CceE--EEecccccccch-hhhhchhh---------heeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence 8875 569875543322 23456665 48999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCEEEEEEec
Q 019384 289 AALSFSRDGRLLAVASSY 306 (342)
Q Consensus 289 ~~v~~spdg~~las~s~~ 306 (342)
+.++||.|.++|++||.+
T Consensus 413 YqvawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 413 YQVAWSADSRLLVSGSKD 430 (480)
T ss_pred EEEEeccCccEEEEcCCC
Confidence 999999999999999975
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-42 Score=293.07 Aligned_cols=278 Identities=21% Similarity=0.229 Sum_probs=223.2
Q ss_pred cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee--eeeeecCCceEEEEEeC------CCCeEEEecCCcEE
Q 019384 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL--RGEFMHGGPVLDCCFHD------DSSGFSASADHTVR 84 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~--~~~~~h~~~V~~~~~~~------~~~~~s~s~D~~i~ 84 (342)
+.+.+|.++|.+|+|+|||..||||+.||+|++||..++.. +.+.+|...|++++|.| .+.++++|.||+++
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr 230 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR 230 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence 45679999999999999999999999999999999987653 45678999999999953 24567999999999
Q ss_pred EEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe----------
Q 019384 85 RLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS---------- 153 (342)
Q Consensus 85 ~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s---------- 153 (342)
+||+..+. ...+.+|+.+|+|+.|.-+ .+|+|||.|++||+|+...+.. ...+..|.+-....+++
T Consensus 231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~--~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 231 IWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL--CRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred EEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH--HHhhcccchheeeeeccchhhhhcccc
Confidence 99998887 4578999999999999754 5899999999999999754221 12233322221112222
Q ss_pred -c-------------------------cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc
Q 019384 154 -L-------------------------VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS 207 (342)
Q Consensus 154 -~-------------------------~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s 207 (342)
. .++.+++++.|.++.+|+-....++..+.. .+...++.++|+||+.++++++
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh-chhhheeeEEECCCccEEEEee
Confidence 1 123599999999999999876655554443 2334578899999999999999
Q ss_pred cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcc
Q 019384 208 VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTS 287 (342)
Q Consensus 208 ~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 287 (342)
-|..++ +||.++.+. .-.+++|- .+|..|+|+.|.+.|++||.|.++++||+++.+....+.+|..+
T Consensus 387 FDkSVk--LW~g~tGk~--lasfRGHv---------~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 387 FDKSVK--LWDGRTGKF--LASFRGHV---------AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE 453 (480)
T ss_pred ccccee--eeeCCCcch--hhhhhhcc---------ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce
Confidence 999875 599876543 23455554 47999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCCEEEEEEecc
Q 019384 288 IAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 288 V~~v~~spdg~~las~s~~~ 307 (342)
|+++.|||||+.+++|+.+.
T Consensus 454 Vf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred EEEEEecCCCceeecCCCce
Confidence 99999999999999988765
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-41 Score=289.61 Aligned_cols=271 Identities=23% Similarity=0.257 Sum_probs=227.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCC---CeEEEecCCcEEEEEeccCc-
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDS---SGFSASADHTVRRLVFSHGK- 92 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~---~~~s~s~D~~i~~w~~~~~~- 92 (342)
....|..+.||+|+..|||||++|+++||...... +..+.+|...|.++.|+|.. .++||+.||++++|.+++..
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 35688999999999999999999999999987754 55667999999999998652 57899999999999998865
Q ss_pred eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEE
Q 019384 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNV 170 (342)
Q Consensus 93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~i 170 (342)
..-+.+|...|..++|+|+|++|+|+|.|.+-|+||+++... .+....|...+.++++ +|..+++|+-|..-|+
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh----hHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 456889999999999999999999999999999999986432 1222223444555554 6778899999999999
Q ss_pred EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250 (342)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 250 (342)
||+|+++.. .... .+...+..|+|+|+|..+++|+.|++++ +||++... ..+.+.+|.. -|+.|+
T Consensus 330 WDlRtgr~i-m~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~k--VWDLR~r~--~ly~ipAH~n---------lVS~Vk 394 (459)
T KOG0272|consen 330 WDLRTGRCI-MFLA-GHIKEILSVAFSPNGYHLATGSSDNTCK--VWDLRMRS--ELYTIPAHSN---------LVSQVK 394 (459)
T ss_pred eecccCcEE-EEec-ccccceeeEeECCCceEEeecCCCCcEE--Eeeecccc--cceecccccc---------hhhheE
Confidence 999998543 3333 2344678999999999999999999875 59997543 3677888876 388999
Q ss_pred EcC-CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 251 FHP-IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 251 ~sp-~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
|+| .|.+|+|+|.|++++||...+..+++++.||.+.|.++++||||.++++++.+.
T Consensus 395 ~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 395 YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred ecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence 999 688999999999999999999999999999999999999999999999988665
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-39 Score=284.32 Aligned_cols=301 Identities=18% Similarity=0.312 Sum_probs=237.2
Q ss_pred CcccCCCCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee----ecCCceEEEEEeCCCC-eE
Q 019384 1 MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF----MHGGPVLDCCFHDDSS-GF 75 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~----~h~~~V~~~~~~~~~~-~~ 75 (342)
+.|+||||+..+.--..|+..|++++|+|||.++||++.||++.|||-.+++...++ +|+|.|.++.|+||++ ++
T Consensus 172 v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~ 251 (603)
T KOG0318|consen 172 VAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFL 251 (603)
T ss_pred EEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEE
Confidence 358999999999999999999999999999999999999999999999988766655 5999999999997765 57
Q ss_pred EEecCCcEEEEEeccCcee--------------------------------------------ecccCCcceeEEEEeCC
Q 019384 76 SASADHTVRRLVFSHGKED--------------------------------------------ILGKHDAPVRCIEYSYA 111 (342)
Q Consensus 76 s~s~D~~i~~w~~~~~~~~--------------------------------------------~~~~h~~~V~~~~~~~~ 111 (342)
++|+|.++++||+.+.... .+.+|...|++++.+++
T Consensus 252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 9999999999998765310 13479999999999999
Q ss_pred CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEEEcCCeEEEEeCCCCC-----------Cc
Q 019384 112 AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVATAGRHVNVYDLRNMS-----------QP 179 (342)
Q Consensus 112 ~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s~d~~v~iwd~~~~~-----------~~ 179 (342)
++.|+||+.||.|.-||..++... .+....+...+..+.... +.+++++.|.++++.++.... +|
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~---~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP 408 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSD---RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP 408 (603)
T ss_pred CCEEEeeccCceEEEEecCCcccc---ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCc
Confidence 999999999999999998765442 122223455677777765 678889999999998763211 11
Q ss_pred c--------------------------cccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeE
Q 019384 180 E--------------------------QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 233 (342)
Q Consensus 180 ~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h 233 (342)
. .....++.++..+++++|++..+++|..|+.+. +|.+........-.+.
T Consensus 409 ~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvh--vysl~g~~l~ee~~~~-- 484 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVH--VYSLSGDELKEEAKLL-- 484 (603)
T ss_pred eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEE--EEEecCCcccceeeee--
Confidence 0 000122345567899999999999999999865 4766543322222222
Q ss_pred EecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee-ccCCCCcceEEEEECCCCCEEEEEEeccccCCC
Q 019384 234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY-QYSKYPTSIAALSFSRDGRLLAVASSYTFEEGD 312 (342)
Q Consensus 234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~ 312 (342)
.|..+|++++||||+.+||+|...+.|.+||+++.+... .+.-|.++|++|+|||+.++||+||-+.
T Consensus 485 -------~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt----- 552 (603)
T KOG0318|consen 485 -------EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT----- 552 (603)
T ss_pred -------cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc-----
Confidence 233479999999999999999999999999999876532 3445999999999999999999999877
Q ss_pred CCCCCCcEEEEEcc
Q 019384 313 KPHEPDAIFVRSVN 326 (342)
Q Consensus 313 ~~~~~~~~~~~~~~ 326 (342)
+|++|+++
T Consensus 553 ------~Viiysv~ 560 (603)
T KOG0318|consen 553 ------NVIIYSVK 560 (603)
T ss_pred ------eEEEEEcc
Confidence 57777664
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.3e-38 Score=255.77 Aligned_cols=260 Identities=20% Similarity=0.279 Sum_probs=209.5
Q ss_pred CCeEEEEeCCCcEEEEECCCceeeeeeecCC-ceEEEEEeCCCCeEEEecCCcEEEEEeccCc---eeecccCCcceeEE
Q 019384 31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGG-PVLDCCFHDDSSGFSASADHTVRRLVFSHGK---EDILGKHDAPVRCI 106 (342)
Q Consensus 31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~-~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~---~~~~~~h~~~V~~~ 106 (342)
.-+|+|+|+|.|||+|.+.+|.+..++.|.+ .|+++...|++..+.++....||+||+.+.+ ...+.+|++.|.++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 3578999999999999999999999998875 5899999999999888889999999998876 35689999999999
Q ss_pred EEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC--eEEEEEcCCeEEEEeCCCCCCcccccc
Q 019384 107 EYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLVVATAGRHVNVYDLRNMSQPEQRRE 184 (342)
Q Consensus 107 ~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--~~~~~s~d~~v~iwd~~~~~~~~~~~~ 184 (342)
.|..+|+.++|||+||++||||+|.... ...+.+...|.++.+.++ .++++..+|.|++||+++.....+ ..
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-li 163 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-LI 163 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCccc-----chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-cC
Confidence 9999999999999999999999997433 223334455666776665 789999999999999987643221 11
Q ss_pred cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc----cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEE
Q 019384 185 SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK----KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFAT 260 (342)
Q Consensus 185 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~----~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~s 260 (342)
+.....+.++...|+|..++.+...|+. ++|++-...... ...++.|.. =+..+.+|||+++||+
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~c--yvW~l~~~~~~s~l~P~~k~~ah~~---------~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNC--YVWRLLNHQTASELEPVHKFQAHNG---------HILRCLLSPDVKYLAT 232 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccE--EEEEccCCCccccceEhhheecccc---------eEEEEEECCCCcEEEe
Confidence 2222456788899999998888777764 668875421111 123444443 3778999999999999
Q ss_pred ecCCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 261 GGCDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 261 gs~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
+|.|.+++||+.++. +...++++|+.++++.+||.||+||++++++.
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 999999999999987 55567899999999999999999999999865
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=254.86 Aligned_cols=276 Identities=20% Similarity=0.293 Sum_probs=224.5
Q ss_pred CccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEeCCCCeE-EEecCCcEEEEEe
Q 019384 11 GRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVF 88 (342)
Q Consensus 11 ~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~ 88 (342)
.+-...+|.+.|+++.|++|+++|+|+|.||.+.|||.-+. +.........-|..|+|+|.+..+ .|+.|+...+|++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 34445799999999999999999999999999999998654 333333456678999999888765 6788999999999
Q ss_pred ccCc-------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCe
Q 019384 89 SHGK-------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNR 158 (342)
Q Consensus 89 ~~~~-------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~ 158 (342)
.+.+ .+.+.+|++.+.|+.|.+ +..|+|+|.|.++.+||++++.. ....+.|...|.++++. ++.
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~----~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQ----TQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceE----EEEecCCcccEEEEecCCCCCCe
Confidence 8662 245789999999999987 55899999999999999986532 12223456677776664 579
Q ss_pred EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA 238 (342)
Q Consensus 159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~ 238 (342)
+++++.|+.-++||+|.+....... .+...++.|.|+|+|..+++++.|++.+ +||++.......|. |.
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~--ghesDINsv~ffP~G~afatGSDD~tcR--lyDlRaD~~~a~ys---~~---- 270 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFE--GHESDINSVRFFPSGDAFATGSDDATCR--LYDLRADQELAVYS---HD---- 270 (343)
T ss_pred EEecccccceeeeeccCcceeEeec--ccccccceEEEccCCCeeeecCCCceeE--EEeecCCcEEeeec---cC----
Confidence 9999999999999999874433222 2344688999999999999999999875 59998765554443 11
Q ss_pred CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384 239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304 (342)
Q Consensus 239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s 304 (342)
....+|++|+||..|++|..|..|.++.+||.-.++.+..+.+|.++|.++..+|||.-|++||
T Consensus 271 --~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 271 --SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred --cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecc
Confidence 2234799999999999999999999999999999999999999999999999999999999887
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-35 Score=241.02 Aligned_cols=282 Identities=23% Similarity=0.294 Sum_probs=215.5
Q ss_pred CCCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCC-----ce-eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEE
Q 019384 14 LGNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASA-----NV-LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRR 85 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~-----~~-~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~ 85 (342)
..+.|.+.|++++..+. .+.|++++.|.++.+|++.. |. .+...+|+..|..+..++++.. +++|.|+++++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl 89 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL 89 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence 34899999999999986 67889999999999999854 22 4566789999999999877665 69999999999
Q ss_pred EEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC----eEE
Q 019384 86 LVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN----RLV 160 (342)
Q Consensus 86 w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~----~~~ 160 (342)
||+.+++ .+.|.+|+.-|.+++|++|+.+|+|||-|++|++|++-..-. -.+....+..-|.++.+.|+ .|+
T Consensus 90 WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck---~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---YTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE---EEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 9999976 467899999999999999999999999999999999753211 11222211333445555443 789
Q ss_pred EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCC
Q 019384 161 VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240 (342)
Q Consensus 161 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~ 240 (342)
+++.|++|++||+++.+.... .......++.+.++|||...++|..++.. .+||+++.+. .+.+.+
T Consensus 167 s~s~DktvKvWnl~~~~l~~~--~~gh~~~v~t~~vSpDGslcasGgkdg~~--~LwdL~~~k~--lysl~a-------- 232 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTT--FIGHSGYVNTVTVSPDGSLCASGGKDGEA--MLWDLNEGKN--LYSLEA-------- 232 (315)
T ss_pred EccCCceEEEEccCCcchhhc--cccccccEEEEEECCCCCEEecCCCCceE--EEEEccCCce--eEeccC--------
Confidence 999999999999998643222 12334557888999999999999888875 5699976533 233221
Q ss_pred ceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC----CC-----CcceEEEEECCCCCEEEEEEeccccCC
Q 019384 241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS----KY-----PTSIAALSFSRDGRLLAVASSYTFEEG 311 (342)
Q Consensus 241 ~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~----~~-----~~~V~~v~~spdg~~las~s~~~~~~~ 311 (342)
.-+|++++|+|+...|+.+ .+-.|+|||.+++.++..++ +. ...+.+++||+||..|.+|-.+.
T Consensus 233 --~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~---- 305 (315)
T KOG0279|consen 233 --FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN---- 305 (315)
T ss_pred --CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC----
Confidence 1269999999987666555 45569999999887776553 22 33578999999999999887665
Q ss_pred CCCCCCCcEEEEEcc
Q 019384 312 DKPHEPDAIFVRSVN 326 (342)
Q Consensus 312 ~~~~~~~~~~~~~~~ 326 (342)
.|.+|++.
T Consensus 306 -------~irv~qv~ 313 (315)
T KOG0279|consen 306 -------VIRVWQVA 313 (315)
T ss_pred -------cEEEEEee
Confidence 68888763
No 10
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-34 Score=229.77 Aligned_cols=276 Identities=22% Similarity=0.328 Sum_probs=223.3
Q ss_pred ccCC--CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEe-CCCCeEEEecCCcEEEEE
Q 019384 12 RELG--NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFH-DDSSGFSASADHTVRRLV 87 (342)
Q Consensus 12 ~~~~--~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~ 87 (342)
++|. ..+.+.|.+++|+-||++.+|++.|.|||+|+...+.++.+ .+|...|.+++.+ ++.++.+|+.|.-+.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 3444 67789999999999999999999999999999988876655 5799999999987 566678999999999999
Q ss_pred eccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384 88 FSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR 166 (342)
Q Consensus 88 ~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~ 166 (342)
+.+++ .+.+++|..+|+.++|+-+...++|||.|.++++||.++....+.+++.. ....+.++...++.|+.++.||
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE--AKDGVSSIDVAEHEIVAGSVDG 165 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh--hcCceeEEEecccEEEeeccCC
Confidence 99998 56899999999999999988999999999999999998765544444433 3345777888888999999999
Q ss_pred eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384 167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV 246 (342)
Q Consensus 167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v 246 (342)
++|.||+|.+..... -+..+++|++++++++..+.++.+++++ +.|-.+.+....| .+|...+ +.+
T Consensus 166 tvRtydiR~G~l~sD----y~g~pit~vs~s~d~nc~La~~l~stlr--LlDk~tGklL~sY--kGhkn~e------ykl 231 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSD----YFGHPITSVSFSKDGNCSLASSLDSTLR--LLDKETGKLLKSY--KGHKNME------YKL 231 (307)
T ss_pred cEEEEEeecceeehh----hcCCcceeEEecCCCCEEEEeeccceee--ecccchhHHHHHh--cccccce------eee
Confidence 999999998743222 3445689999999999999999999765 5777655444333 4554432 223
Q ss_pred eEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcc-eEEEEECCCCCEEEEEE
Q 019384 247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTS-IAALSFSRDGRLLAVAS 304 (342)
Q Consensus 247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~-V~~v~~spdg~~las~s 304 (342)
.++++.....+++||+||.|++||+.+...+..+.-+... |.++++.|.-.-|.++.
T Consensus 232 -dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 232 -DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred -eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence 3566666778999999999999999998888888777666 89999999877555554
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=255.97 Aligned_cols=237 Identities=20% Similarity=0.209 Sum_probs=193.7
Q ss_pred CCCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccC
Q 019384 16 NPPSDGISNLRFSNH--SDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHG 91 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~--~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~ 91 (342)
.+|...|.++.|+|. +..||||+.||++++|++++... ...-+|...|..++|+|+++. .|+|.|.+.++||+.++
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence 689999999999997 56899999999999999988554 445579999999999988876 59999999999999998
Q ss_pred cee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE--eccCCeEEEEEcCCeE
Q 019384 92 KED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL--SLVGNRLVVATAGRHV 168 (342)
Q Consensus 92 ~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s~d~~v 168 (342)
.+. ..+||...|.+|+|.+||.+++||+.|..=||||++++.+ .+.+.. |...|+++ +++|..+++|+.|+++
T Consensus 294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~--im~L~g--H~k~I~~V~fsPNGy~lATgs~Dnt~ 369 (459)
T KOG0272|consen 294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC--IMFLAG--HIKEILSVAFSPNGYHLATGSSDNTC 369 (459)
T ss_pred hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE--EEEecc--cccceeeEeECCCceEEeecCCCCcE
Confidence 865 4589999999999999999999999999999999998654 344554 34445554 5556689999999999
Q ss_pred EEEeCCCCCCcccccccccceeeEEEEEee-CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384 169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYP-NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247 (342)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~ 247 (342)
++||++..+...+ .+++...+..|.+.| .|.++++++.|++++| |...+.+.. ..+.+|.. .|.
T Consensus 370 kVWDLR~r~~ly~--ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki--Ws~~~~~~~--ksLaGHe~---------kV~ 434 (459)
T KOG0272|consen 370 KVWDLRMRSELYT--IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI--WSTRTWSPL--KSLAGHEG---------KVI 434 (459)
T ss_pred EEeeeccccccee--cccccchhhheEecccCCeEEEEcccCcceee--ecCCCcccc--hhhcCCcc---------ceE
Confidence 9999997544222 233444567788998 6778899999998755 887654332 34566654 599
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEe
Q 019384 248 AIAFHPIYGTFATGGCDGFVNVWD 271 (342)
Q Consensus 248 ~v~~sp~~~~l~sgs~Dg~I~iWd 271 (342)
+|..+||+.+++|++.|++|++|.
T Consensus 435 s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999995
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.5e-34 Score=236.55 Aligned_cols=281 Identities=20% Similarity=0.244 Sum_probs=220.4
Q ss_pred cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--eeeeeeecCCceEEEEEeCC-CCeEEEecCCcEEEEEec
Q 019384 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--VLRGEFMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFS 89 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~~~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~ 89 (342)
++...|++.|+.+.|+|+|..||||+.|..|-||++... ..-...+|+++|..+.|..+ ..++++|.|.+++.||.+
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 445789999999999999999999999999999998653 23344589999999999855 456899999999999999
Q ss_pred cCc-eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcC
Q 019384 90 HGK-EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAG 165 (342)
Q Consensus 90 ~~~-~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d 165 (342)
+++ .+...+|.+.|++++-+.-| ..+.|++.|+++|+||.|+... ...+...-.+.++.+ .++.+++|+-|
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----~~t~~~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----IKTFENKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-----hhccccceeEEEEEecccccceeecccc
Confidence 998 45788999999999855555 4568899999999999985332 122212223444554 56789999999
Q ss_pred CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc--cceeeeEEecCCCCcee
Q 019384 166 RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK--KYAFKCHRKSEAGRDIV 243 (342)
Q Consensus 166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~--~~~~~~h~~~~~~~~~~ 243 (342)
+.|++||++....... .......++.++.+++|..+.+.++|.++. +||.+...... ...+.+|.... .
T Consensus 196 n~ikvWd~r~~d~~~~--lsGh~DtIt~lsls~~gs~llsnsMd~tvr--vwd~rp~~p~~R~v~if~g~~hnf-----e 266 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYT--LSGHADTITGLSLSRYGSFLLSNSMDNTVR--VWDVRPFAPSQRCVKIFQGHIHNF-----E 266 (338)
T ss_pred CceeeeccccCcceEE--eecccCceeeEEeccCCCccccccccceEE--EEEecccCCCCceEEEeecchhhh-----h
Confidence 9999999988654322 223445688999999999999999998765 59987543222 22333333211 1
Q ss_pred eeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.....++|+|++..+..|+.|+.+++||......+..++||.+.|++++|.|...+|.+++++.
T Consensus 267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred hhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence 1355689999999999999999999999999889999999999999999999999999999876
No 13
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-34 Score=244.98 Aligned_cols=293 Identities=16% Similarity=0.172 Sum_probs=221.7
Q ss_pred CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-ce---eeeeeecCCceEEEEEeCCC-CeEEEecCCc
Q 019384 8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-NV---LRGEFMHGGPVLDCCFHDDS-SGFSASADHT 82 (342)
Q Consensus 8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-~~---~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~ 82 (342)
|...-..-..|.++|+.+.||++|++|||++.|.|+.+|++.. .. ..+..+|..+|.-+.|+||+ .+++|+.|..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 3444444568999999999999999999999999999999854 22 34556899999999999765 5679999999
Q ss_pred EEEEEeccCceeecc--cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEE--EEeccCCe
Q 019384 83 VRRLVFSHGKEDILG--KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVY--SLSLVGNR 158 (342)
Q Consensus 83 i~~w~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~--~~s~~~~~ 158 (342)
+++||..++...... +|...+.|++|.||+..+++|+.|++|..||++..... ...... ..++. ++..+|+.
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~---~W~gvr-~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG---NWEGVR-DPKVHDLAITYDGKY 368 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh---cccccc-cceeEEEEEcCCCcE
Confidence 999999999865443 45688999999999999999999999999998743211 111111 13344 45567889
Q ss_pred EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA 238 (342)
Q Consensus 159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~ 238 (342)
+++.+.|..|++++..+.... ........++++..+.+++.+++.-.+..+ .+||+.+...+++| .+|...
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr---~lise~~~its~~iS~d~k~~LvnL~~qei--~LWDl~e~~lv~kY--~Ghkq~-- 439 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDR---GLISEEQPITSFSISKDGKLALVNLQDQEI--HLWDLEENKLVRKY--FGHKQG-- 439 (519)
T ss_pred EEEEecccceeeechhhhhhh---ccccccCceeEEEEcCCCcEEEEEcccCee--EEeecchhhHHHHh--hccccc--
Confidence 999999999999998653211 011222357788889999988877777655 56999866555554 345432
Q ss_pred CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC-CEEEEEEeccccCCCCCCCC
Q 019384 239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG-RLLAVASSYTFEEGDKPHEP 317 (342)
Q Consensus 239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg-~~las~s~~~~~~~~~~~~~ 317 (342)
.+-|.+|--.-+..++++||+|+.|+||+..+++++..+.||...|++++|+|.. +++|++|.++
T Consensus 440 ----~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg---------- 505 (519)
T KOG0293|consen 440 ----HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG---------- 505 (519)
T ss_pred ----ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC----------
Confidence 1235543323455799999999999999999999999999999999999999954 5788777666
Q ss_pred CcEEEEEccCC
Q 019384 318 DAIFVRSVNEI 328 (342)
Q Consensus 318 ~~~~~~~~~~~ 328 (342)
.|.+|..+..
T Consensus 506 -tIRIWg~~~~ 515 (519)
T KOG0293|consen 506 -TIRIWGPSDN 515 (519)
T ss_pred -eEEEecCCcc
Confidence 5888876543
No 14
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=252.75 Aligned_cols=291 Identities=21% Similarity=0.323 Sum_probs=222.8
Q ss_pred cccCCCCCCCccCC--------------CCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCC-ce-eeeeeecCCceE
Q 019384 2 TAVHPPPTSGRELG--------------NPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASA-NV-LRGEFMHGGPVL 64 (342)
Q Consensus 2 ~~~~~~~~~~~~~~--------------~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~-~~-~~~~~~h~~~V~ 64 (342)
+|||+|-+.+.+|+ .+|..+|.++.|.| .+.+|+|++.|+.|+||++.. ++ +++..+|..+|.
T Consensus 183 ~~l~~P~dv~vnlR~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vr 262 (503)
T KOG0282|consen 183 SYLQKPKDVGVNLREERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVR 262 (503)
T ss_pred ccccCCcccCCccccceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhh
Confidence 58999999999996 37889999999999 889999999999999999865 44 556678999999
Q ss_pred EEEEeCCC-CeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeee
Q 019384 65 DCCFHDDS-SGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGT 142 (342)
Q Consensus 65 ~~~~~~~~-~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~ 142 (342)
+++|+..+ +++++|.|+.+++||.+++.+..--.-...++|+.|+|++ +.|++|+.|+.|+.||+|++.. ++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-----vqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-----VQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-----HHH
Confidence 99999554 5789999999999999999865433334568899999998 7889999999999999997542 222
Q ss_pred c-CCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384 143 Y-PQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDL 219 (342)
Q Consensus 143 ~-~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~ 219 (342)
+ .+-..+..+.+ .+..+++.+.|+.+++|+.+.......... .......|+..+|+++.++.=+.++.+.+ |.+
T Consensus 338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs~dN~i~i--fs~ 414 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFAAQSMDNYIAI--FST 414 (503)
T ss_pred HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeehhhccCceEEE--Eec
Confidence 2 22234444444 567899999999999999987532211111 11122457889999999888888887654 654
Q ss_pred hhhh-hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC
Q 019384 220 SEAS-QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR 298 (342)
Q Consensus 220 ~~~~-~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~ 298 (342)
.... ..+...+.+|.-. | + -..|.|||||.+|++|..||.+.+||.++-+.+..++.|...|..+.|.|-..
T Consensus 415 ~~~~r~nkkK~feGh~va--G----y-s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 415 VPPFRLNKKKRFEGHSVA--G----Y-SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred ccccccCHhhhhcceecc--C----c-eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCc
Confidence 3221 1222344566432 1 2 24589999999999999999999999999999999999999999999999877
Q ss_pred EEEEEEecc
Q 019384 299 LLAVASSYT 307 (342)
Q Consensus 299 ~las~s~~~ 307 (342)
--+++++++
T Consensus 488 Skvat~~w~ 496 (503)
T KOG0282|consen 488 SKVATCGWD 496 (503)
T ss_pred ceeEecccC
Confidence 544455444
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-33 Score=244.13 Aligned_cols=282 Identities=17% Similarity=0.260 Sum_probs=218.3
Q ss_pred CCCCCCCccCCCCCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCc--e------eeeee-------ecCCceEEEEE
Q 019384 5 HPPPTSGRELGNPPSDGISNLRFSNHSD-HLLVSSWDKSVRLYDASAN--V------LRGEF-------MHGGPVLDCCF 68 (342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~--~------~~~~~-------~h~~~V~~~~~ 68 (342)
|-|...-+.++ |+..|.+.+|+|-.+ .|++++.|-+.|+|++... . +++-+ ..+..|++++|
T Consensus 166 ~I~~~~~kvl~--~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 166 EIPSSKAKVLR--HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred cccccceeecc--CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe
Confidence 34444444454 999999999999776 8999999999999998641 1 11111 12357999999
Q ss_pred eCCCC-eEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC
Q 019384 69 HDDSS-GFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE 147 (342)
Q Consensus 69 ~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~ 147 (342)
+.++. +++|+.||.+++|+........+..|.++|.++.|+.+|++|++++-|+++.+||..+++... .+..+. .
T Consensus 244 n~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q--~f~~~s--~ 319 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ--QFEFHS--A 319 (524)
T ss_pred cCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE--eeeecc--C
Confidence 85555 579999999999998877778899999999999999999999999999999999986544321 122222 2
Q ss_pred cEEEEec-cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc
Q 019384 148 RVYSLSL-VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK 226 (342)
Q Consensus 148 ~v~~~s~-~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~ 226 (342)
....+.+ +.+.+++++.|+.|+++.+... .|..... .+...+.++.|.|.+..++++|.|++++ +|+..... .
T Consensus 320 ~~lDVdW~~~~~F~ts~td~~i~V~kv~~~-~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~Tlk--iWs~~~~~--~ 393 (524)
T KOG0273|consen 320 PALDVDWQSNDEFATSSTDGCIHVCKVGED-RPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLK--IWSMGQSN--S 393 (524)
T ss_pred CccceEEecCceEeecCCCceEEEEEecCC-Ccceeee-cccCceEEEEECCCCceEEEecCCCeeE--eeecCCCc--c
Confidence 2234555 3458999999999999988654 3333332 3556789999999999999999999875 58864321 2
Q ss_pred cceeeeEEecCCCCceeeeeeEEEEcCCC---------CeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384 227 KYAFKCHRKSEAGRDIVYPVNAIAFHPIY---------GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG 297 (342)
Q Consensus 227 ~~~~~~h~~~~~~~~~~~~v~~v~~sp~~---------~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg 297 (342)
...+..|.+ .|.++.|+|+| .++++++.|++|++||+..+.+++.|.+|+.+|++++|||+|
T Consensus 394 ~~~l~~Hsk---------ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g 464 (524)
T KOG0273|consen 394 VHDLQAHSK---------EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG 464 (524)
T ss_pred hhhhhhhcc---------ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence 233455654 48888888863 579999999999999999999999999999999999999999
Q ss_pred CEEEEEEecc
Q 019384 298 RLLAVASSYT 307 (342)
Q Consensus 298 ~~las~s~~~ 307 (342)
+|||+|+.+.
T Consensus 465 ~ylAsGs~dg 474 (524)
T KOG0273|consen 465 RYLASGSLDG 474 (524)
T ss_pred cEEEecCCCC
Confidence 9999999754
No 16
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-34 Score=230.25 Aligned_cols=275 Identities=20% Similarity=0.251 Sum_probs=222.5
Q ss_pred CCCCCCCCeEEEEEcC---CCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCC-eEEEecCCcEEEEEe
Q 019384 14 LGNPPSDGISNLRFSN---HSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSS-GFSASADHTVRRLVF 88 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~---~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~ 88 (342)
.|.+|+..|-.|+||| +|..|+|++.|+.-.|-+-.++..+.+ .+|++.|+.++...+.. .+++++|-+.++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4689999999999996 788999999999999988888876655 58999999999975544 468999999999999
Q ss_pred ccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384 89 SHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV 168 (342)
Q Consensus 89 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v 168 (342)
-++.+..--.|.-.|.+++|+.|.++|+||+.++-+|++|++...... +.+..+....+-.-++...+.|++.+.|++|
T Consensus 89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 888877667788899999999999999999999999999998654432 2233333344445567777899999999999
Q ss_pred EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384 169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248 (342)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 248 (342)
|+||.+++.... . ..++.+++++.++++|..+.++- .+. +.|||.......+.+.+++ .|.+
T Consensus 168 RLWD~rTgt~v~-s--L~~~s~VtSlEvs~dG~ilTia~-gss--V~Fwdaksf~~lKs~k~P~------------nV~S 229 (334)
T KOG0278|consen 168 RLWDHRTGTEVQ-S--LEFNSPVTSLEVSQDGRILTIAY-GSS--VKFWDAKSFGLLKSYKMPC------------NVES 229 (334)
T ss_pred EEEEeccCcEEE-E--EecCCCCcceeeccCCCEEEEec-Cce--eEEeccccccceeeccCcc------------cccc
Confidence 999999974332 1 23445678888999998665543 333 4689986544444443332 5888
Q ss_pred EEEcCCCCeEEEecCCCeEEEEeCCCceeeecc-CCCCcceEEEEECCCCCEEEEEEecc
Q 019384 249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY-SKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
...+|+..+++.|++|..++.||..++..+..+ ++|.++|.|+.|||||...|+||.++
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 999999999999999999999999999988876 89999999999999999999999876
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=240.87 Aligned_cols=280 Identities=20% Similarity=0.269 Sum_probs=222.1
Q ss_pred CCCCccCC-CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCC-eEEEecCCcEE
Q 019384 8 PTSGRELG-NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSS-GFSASADHTVR 84 (342)
Q Consensus 8 ~~~~~~~~-~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~ 84 (342)
++....+. |.-...|+.|+|.|+|++|++|+..|.+.||+...-.. ....+|..+|.++.|++++. ++||..+|.|+
T Consensus 84 ~tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 84 TTKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred ccceEeccccccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEE
Confidence 34444555 77788999999999999999999999999999865322 22347999999999986665 57999999999
Q ss_pred EEEeccCceeecccCC-cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC--eEEE
Q 019384 85 RLVFSHGKEDILGKHD-APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLVV 161 (342)
Q Consensus 85 ~w~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--~~~~ 161 (342)
+|+........+..|. ..|++++|+|.+..|+|+|.|++|+|||......+ ..+.. +...+.++++.+. .+++
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee--~vL~G--HgwdVksvdWHP~kgLias 239 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE--RVLRG--HGWDVKSVDWHPTKGLIAS 239 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh--heecc--CCCCcceeccCCccceeEE
Confidence 9998877776665554 89999999999999999999999999998754332 22333 3345667777664 7889
Q ss_pred EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384 162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD 241 (342)
Q Consensus 162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~ 241 (342)
++.|..|++||-++++.... .+.++..+..+.|.++++.+++++.|..+ ++||++.- ...+..++|++.
T Consensus 240 gskDnlVKlWDprSg~cl~t--lh~HKntVl~~~f~~n~N~Llt~skD~~~--kv~DiR~m--kEl~~~r~Hkkd----- 308 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLAT--LHGHKNTVLAVKFNPNGNWLLTGSKDQSC--KVFDIRTM--KELFTYRGHKKD----- 308 (464)
T ss_pred ccCCceeEeecCCCcchhhh--hhhccceEEEEEEcCCCCeeEEccCCceE--EEEehhHh--HHHHHhhcchhh-----
Confidence 99999999999999865432 23445567889999999999999999865 56999743 334556788773
Q ss_pred eeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCceeeecc-CCCCcceEEEEECCCCCEEEEEEec
Q 019384 242 IVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRLYQY-SKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 242 ~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
|+++.|||-.+ +|.+|+.||.|..|.+...+.+..+ ..|...|++++|.|=|.+||+||.+
T Consensus 309 ----v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 309 ----VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSND 371 (464)
T ss_pred ----heeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCC
Confidence 89999999755 6789999999999998855555433 4789999999999999999998864
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.3e-32 Score=252.65 Aligned_cols=281 Identities=22% Similarity=0.242 Sum_probs=221.4
Q ss_pred ccCCCCC-CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--ee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEE
Q 019384 12 RELGNPP-SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRL 86 (342)
Q Consensus 12 ~~~~~~~-~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w 86 (342)
+.+...+ ...|.++.|+++|+.|++++.|+++++|+....+ +. ...+|...|.+++|+++++ +++++.|+++++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4444444 7899999999999999999999999999996554 33 3358999999999998775 5699999999999
Q ss_pred EeccC-c-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc
Q 019384 87 VFSHG-K-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA 164 (342)
Q Consensus 87 ~~~~~-~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~ 164 (342)
|+... . .+.+.+|...|++++|+|+++++++|+.|++||+||+++++. ...+..+......+++..+++.+++++.
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~--~~~l~~hs~~is~~~f~~d~~~l~s~s~ 308 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC--VRKLKGHSDGISGLAFSPDGNLLVSASY 308 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE--EEeeeccCCceEEEEECCCCCEEEEcCC
Confidence 99444 3 467889999999999999999999999999999999987433 3344455444555566667789999999
Q ss_pred CCeEEEEeCCCCCCc--cc-ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384 165 GRHVNVYDLRNMSQP--EQ-RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD 241 (342)
Q Consensus 165 d~~v~iwd~~~~~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~ 241 (342)
|+.|++||+.++... .. ....... .+.++.++|++.+++++..++.+. +||+......+.+ ..|...
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~--~w~l~~~~~~~~~--~~~~~~----- 378 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLK--LWDLRSGKSVGTY--TGHSNL----- 378 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEE--EEEccCCcceeee--cccCCc-----
Confidence 999999999988621 11 1111112 578899999999999999998765 5998654333322 233221
Q ss_pred eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCC-CcceEEEEECCCCCEEEEEEe
Q 019384 242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKY-PTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~V~~v~~spdg~~las~s~ 305 (342)
...+.+..+++.+.++++|+.|+.|++||..++..+..+.+| ...+..++++|...++++++.
T Consensus 379 -~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 379 -VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred -ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCc
Confidence 123445566889999999999999999999998889999999 889999999999999998874
No 19
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-31 Score=222.97 Aligned_cols=275 Identities=22% Similarity=0.298 Sum_probs=212.9
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ecCCceEEEEEe-CCCCeEEEec--CCcEEEEEeccCc-
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFH-DDSSGFSASA--DHTVRRLVFSHGK- 92 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~V~~~~~~-~~~~~~s~s~--D~~i~~w~~~~~~- 92 (342)
....|+++.|+++|.+|++++.|.+++|||..+++....+ .++-.|..++|. ++..++.++. |.+||+.++...+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 5779999999999999999999999999999988765554 455678889996 6666776666 8899999998776
Q ss_pred eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172 (342)
Q Consensus 93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd 172 (342)
.+.+.||...|.+++.+|-++.|+|+|.|++||+||++...++. .+. .....+.++++.|-.+|++...+.|++||
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg--~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG--LLN--LSGRPIAAFDPEGLIFALANGSELIKLYD 168 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce--EEe--cCCCcceeECCCCcEEEEecCCCeEEEEE
Confidence 67899999999999999999999999999999999998654432 221 12344667777777788888878999999
Q ss_pred CCCCCC-ccccccc--ccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384 173 LRNMSQ-PEQRRES--SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249 (342)
Q Consensus 173 ~~~~~~-~~~~~~~--~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 249 (342)
+|.... |.+.... .-...-+.+.|+|+|+.++++...+.+ ++.|.-.+. ....+..+..... -+ -..
T Consensus 169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~--~~lDAf~G~--~~~tfs~~~~~~~-----~~-~~a 238 (311)
T KOG1446|consen 169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFI--YLLDAFDGT--VKSTFSGYPNAGN-----LP-LSA 238 (311)
T ss_pred ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcE--EEEEccCCc--EeeeEeeccCCCC-----cc-eeE
Confidence 998733 3332221 112345778999999999998887755 446653332 2223333322110 02 356
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC-CCcceEEEEECCCCCEEEEEEec
Q 019384 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK-YPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~V~~v~~spdg~~las~s~~ 306 (342)
+|+||++++++|+.||+|++|++++++.+..+.+ +..++.++.|+|.-..+|++++.
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~ 296 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN 296 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCce
Confidence 8999999999999999999999999999988887 78899999999999999988863
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-33 Score=258.76 Aligned_cols=263 Identities=25% Similarity=0.295 Sum_probs=206.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-eeecc
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILG 97 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~ 97 (342)
..+++|..|++|+..||.|-.|..|++|.+...+++..... .+. ...=+.++|-.+.+.|..... .+.+.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~-------~~l--~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDA-------SDL--SNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccch-------hhh--ccccccccchhhhhccccCCceeEEee
Confidence 46899999999999999999999999999976554443211 110 011144555556666655544 45689
Q ss_pred cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384 98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS 177 (342)
Q Consensus 98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~ 177 (342)
+|+++|+.+.|+|+.++|+|||.|+++|+|.+++.... .....+..+..-+.|++.|.++++++.|++-++|.....
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~--V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~- 525 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL--VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN- 525 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeE--EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-
Confidence 99999999999999999999999999999999864431 222333344444566777789999999999999998764
Q ss_pred CcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe
Q 019384 178 QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT 257 (342)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~ 257 (342)
.+.+.. ..+-..+.|++|+|+..++++||.|.+++ +||...+..++. +.+|.. +|.+++|||+|++
T Consensus 526 ~PlRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVR--lWDv~~G~~VRi--F~GH~~---------~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 526 KPLRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVR--LWDVSTGNSVRI--FTGHKG---------PVTALAFSPCGRY 591 (707)
T ss_pred Cchhhh-cccccccceEEECCcccccccCCCCceEE--EEEcCCCcEEEE--ecCCCC---------ceEEEEEcCCCce
Confidence 332222 23334678999999999999999999875 599977665555 455554 7999999999999
Q ss_pred EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 258 FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 258 l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
|++|++||.|.|||+.+++.+.++.+|.+.|.+|.||.||..||+|+.+.
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999864
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3e-32 Score=224.99 Aligned_cols=241 Identities=19% Similarity=0.241 Sum_probs=195.8
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-------eeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEe
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-------VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVF 88 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-------~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~ 88 (342)
.-++.+|...+|+|.|+.+|.|+.|+...||+++.. ..+.+.+|.+-+.+|.|.++.+++++|.|.+..+||+
T Consensus 94 pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDI 173 (343)
T ss_pred ecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEc
Confidence 566889999999999999999999999999999743 1344568999999999999999999999999999999
Q ss_pred ccCc-eeecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384 89 SHGK-EDILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR 166 (342)
Q Consensus 89 ~~~~-~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~ 166 (342)
+++. ...+.+|++-|.++++.| +++.|+||+.|++.+|||+|.+.. .+.+..+..-...+.|-+++..|++++.|+
T Consensus 174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c--~qtF~ghesDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC--VQTFEGHESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce--eEeecccccccceEEEccCCCeeeecCCCc
Confidence 9988 457899999999999999 889999999999999999997533 233433333333444555677899999999
Q ss_pred eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384 167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV 246 (342)
Q Consensus 167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v 246 (342)
+.|+||+|................+++++|+..|+.+..+..|.++. +||.-.. .+.-.+.+|.. .|
T Consensus 252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~--vWDtlk~--e~vg~L~GHeN---------Rv 318 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCN--VWDTLKG--ERVGVLAGHEN---------RV 318 (343)
T ss_pred eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCcee--Eeecccc--ceEEEeeccCC---------ee
Confidence 99999999864333222233445688999999999999998888765 5997432 33344556654 69
Q ss_pred eEEEEcCCCCeEEEecCCCeEEEEe
Q 019384 247 NAIAFHPIYGTFATGGCDGFVNVWD 271 (342)
Q Consensus 247 ~~v~~sp~~~~l~sgs~Dg~I~iWd 271 (342)
+++..+|||..|+|||+|.++|||.
T Consensus 319 Scl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 319 SCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999994
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=231.44 Aligned_cols=285 Identities=16% Similarity=0.201 Sum_probs=223.7
Q ss_pred CCCCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeC-CCCeEEEecCCc
Q 019384 5 HPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHD-DSSGFSASADHT 82 (342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~-~~~~~s~s~D~~ 82 (342)
|+|+.+=+.-..+|...|+.+-|.|+-..+++++.|++|++||..++.+ ..+.+|.+.|.++.|.. +..+++++.|-.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 4555444444456889999999999999999999999999999988764 45678999999999985 445679999999
Q ss_pred EEEEEeccCc--eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEE
Q 019384 83 VRRLVFSHGK--EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLV 160 (342)
Q Consensus 83 i~~w~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~ 160 (342)
+++||+++.. .+.+.+|.-.|.+++|-|.|+.|+|++.|.+|+.||+.++.. ...+..+..=.+++.+.-++..++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c--v~t~~~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC--VKTFPGHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee--EEeccCchHhEEEEEecCCeeEEE
Confidence 9999998743 346788999999999999999999999999999999986543 222332222233445555677888
Q ss_pred EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC---------------CceEEEEccCCeEEEEEeechhhhhc
Q 019384 161 VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN---------------GTGYALSSVEGRVAMEFFDLSEASQA 225 (342)
Q Consensus 161 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~~~~~s~~~~~~i~~~d~~~~~~~ 225 (342)
+++.|.++++|-+.+.+.....++ +...+.|++|-|. ++.+.+++.|+++ ++||+... .
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~lR~--hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI--k~wdv~tg--~ 325 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAELRE--HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI--KIWDVSTG--M 325 (406)
T ss_pred ecCCCceEEEEEeccchhhhhhhc--cccceEEEEecccccCcchhhccCCCCCccEEEeecccceE--EEEeccCC--e
Confidence 999999999999988644333232 2334667766432 1356667777765 56998654 4
Q ss_pred ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 226 KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 226 ~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
..+.+.+|.. .|+.++|+|.|++|+|+.+|+++++||++++++...+..|...|++++|..+.-++++|+-
T Consensus 326 cL~tL~ghdn---------wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 326 CLFTLVGHDN---------WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV 396 (406)
T ss_pred EEEEEecccc---------eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc
Confidence 4566777765 6999999999999999999999999999999999999999999999999999999999885
Q ss_pred c
Q 019384 306 Y 306 (342)
Q Consensus 306 ~ 306 (342)
+
T Consensus 397 d 397 (406)
T KOG0295|consen 397 D 397 (406)
T ss_pred c
Confidence 4
No 23
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.9e-32 Score=229.89 Aligned_cols=276 Identities=20% Similarity=0.332 Sum_probs=214.7
Q ss_pred CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe-CCCC---eEEEecCCcEEEEEecc
Q 019384 15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSS---GFSASADHTVRRLVFSH 90 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~-~~~~---~~s~s~D~~i~~w~~~~ 90 (342)
+-.|.++|.+|.-. ++.++||++||++||||..+.......+|.++|.++.|. .+.. +++||.|+++++|-++.
T Consensus 101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 35678999999877 789999999999999999988777888999999999985 4443 78999999999999987
Q ss_pred Cce-----eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC--------C------------cceeee-eecC
Q 019384 91 GKE-----DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS--------G------------QERTLV-GTYP 144 (342)
Q Consensus 91 ~~~-----~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~--------~------------~~~~~~-~~~~ 144 (342)
+.. ....||...|.+++..+++.+++|||+|.+|++|+..+.. . ..+..+ ....
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 762 1235999999999999999999999999999999932110 0 000111 1122
Q ss_pred CCCcEEEEecc-CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh
Q 019384 145 QPERVYSLSLV-GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS 223 (342)
Q Consensus 145 ~~~~v~~~s~~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~ 223 (342)
|...|.++.+. ...+++++.|.+|+.||+.++...... ..+...+|+..+|....+++++.|..+ ++||.+...
T Consensus 259 Ht~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~---~~~ksl~~i~~~~~~~Ll~~gssdr~i--rl~DPR~~~ 333 (423)
T KOG0313|consen 259 HTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL---TTNKSLNCISYSPLSKLLASGSSDRHI--RLWDPRTGD 333 (423)
T ss_pred cccceeeEEEcCCCceEeecccceEEEEEeecccceeee---ecCcceeEeecccccceeeecCCCCce--eecCCCCCC
Confidence 44556666664 457899999999999999987543222 233457899999998999999998865 569987643
Q ss_pred h-cccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCce-eeeccCCCCcceEEEEECCCCCEE
Q 019384 224 Q-AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSIAALSFSRDGRLL 300 (342)
Q Consensus 224 ~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~spdg~~l 300 (342)
. .-...+.+|.. -|.+|.++|... +|++|+.|+++++||+++.+ .+..+.+|...|.++.|+ ++.+|
T Consensus 334 gs~v~~s~~gH~n---------wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~I 403 (423)
T KOG0313|consen 334 GSVVSQSLIGHKN---------WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLI 403 (423)
T ss_pred CceeEEeeecchh---------hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceE
Confidence 2 22345556654 599999999876 57999999999999999876 788999999999999994 66788
Q ss_pred EEEEecc
Q 019384 301 AVASSYT 307 (342)
Q Consensus 301 as~s~~~ 307 (342)
++|+.+.
T Consensus 404 vSGGaD~ 410 (423)
T KOG0313|consen 404 VSGGADN 410 (423)
T ss_pred EeccCcc
Confidence 8888765
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.1e-31 Score=263.27 Aligned_cols=280 Identities=18% Similarity=0.232 Sum_probs=206.9
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc----e----eeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEE
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----V----LRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRL 86 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~----~----~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w 86 (342)
.|.+.|.+++|+|++++||||+.|++|+|||.... . ......+...|.+++|.+ ...+++++.|++|++|
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 37889999999999999999999999999997531 1 122334567889999974 3456799999999999
Q ss_pred EeccCc-eeecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec---cCCeEEE
Q 019384 87 VFSHGK-EDILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL---VGNRLVV 161 (342)
Q Consensus 87 ~~~~~~-~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~---~~~~~~~ 161 (342)
|+.++. ...+.+|...|++++|+| ++.+|+||+.|++|++||+++... ...+. ....+.++.+ ++..+++
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~---~~~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IGTIK---TKANICCVQFPSESGRSLAF 635 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EEEEe---cCCCeEEEEEeCCCCCEEEE
Confidence 998776 345788999999999997 678999999999999999975432 11222 2233445544 4678999
Q ss_pred EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh----cccceeeeEEecC
Q 019384 162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ----AKKYAFKCHRKSE 237 (342)
Q Consensus 162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~----~~~~~~~~h~~~~ 237 (342)
++.|+.|++||+++...+.... ..+...+.++.|. ++..+++++.|+.+ ++||...... .....+.+|.
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~i--kiWd~~~~~~~~~~~~l~~~~gh~--- 708 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTL--KLWDLSMSISGINETPLHSFMGHT--- 708 (793)
T ss_pred EeCCCeEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEE--EEEeCCCCccccCCcceEEEcCCC---
Confidence 9999999999998754322211 1233456777776 67788999999976 4598753211 1122333443
Q ss_pred CCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeec-------------cCCCCcceEEEEECCCCCEEEEEE
Q 019384 238 AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQ-------------YSKYPTSIAALSFSRDGRLLAVAS 304 (342)
Q Consensus 238 ~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~-------------~~~~~~~V~~v~~spdg~~las~s 304 (342)
..+++++|+|++.+|++|+.|++|++|+......+.. ...+...|.+++|+|++.+|++|+
T Consensus 709 ------~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 709 ------NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred ------CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 2578899999999999999999999999765432211 123456799999999999999999
Q ss_pred eccccCCCCCCCCCcEEEEEc
Q 019384 305 SYTFEEGDKPHEPDAIFVRSV 325 (342)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~ 325 (342)
+++ .|.+|++
T Consensus 783 ~dG-----------~I~i~~~ 792 (793)
T PLN00181 783 STG-----------NIKILEM 792 (793)
T ss_pred CCC-----------cEEEEec
Confidence 876 4777764
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-31 Score=242.17 Aligned_cols=273 Identities=18% Similarity=0.230 Sum_probs=214.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeec-CCceEEEEEeCCCCeEEEec--CCcEEEEEeccCc-ee
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH-GGPVLDCCFHDDSSGFSASA--DHTVRRLVFSHGK-ED 94 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h-~~~V~~~~~~~~~~~~s~s~--D~~i~~w~~~~~~-~~ 94 (342)
+..|++.+|.+..+.||+|-..|...||++....+++...- ..+|..+.|..-+-+++-+. =|-+-+|++.... ..
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL 344 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence 47899999999999999999999999999998877665543 47899999985555544333 3467789887765 34
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~ 174 (342)
...+|...+.|++++|||++++||+.||+|||||..++.+ ...+..+....+.+.+...++.+++++-||+||.||+.
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 5678999999999999999999999999999999876544 33444444445556666678899999999999999998
Q ss_pred CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384 175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI 254 (342)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~ 254 (342)
.+..- +.+..+-+.+..|++..|.|..++.|+.|. ..|++|+..+.+ ..-.+.+|. +||.+++|+|+
T Consensus 423 RYrNf-RTft~P~p~QfscvavD~sGelV~AG~~d~-F~IfvWS~qTGq--llDiLsGHE---------gPVs~l~f~~~ 489 (893)
T KOG0291|consen 423 RYRNF-RTFTSPEPIQFSCVAVDPSGELVCAGAQDS-FEIFVWSVQTGQ--LLDILSGHE---------GPVSGLSFSPD 489 (893)
T ss_pred cccee-eeecCCCceeeeEEEEcCCCCEEEeeccce-EEEEEEEeecCe--eeehhcCCC---------CcceeeEEccc
Confidence 77442 333445567889999999998777777664 478899986543 223345554 48999999999
Q ss_pred CCeEEEecCCCeEEEEeCCCce-eeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 255 YGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 255 ~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
+..|+|||+|.|||+||+-... .+.++ .+...+..++|+|||+.||++..++
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence 9999999999999999975432 33333 4678899999999999999998753
No 26
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-31 Score=224.31 Aligned_cols=290 Identities=18% Similarity=0.237 Sum_probs=220.9
Q ss_pred CCCCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCC-CCeEEEecCCc
Q 019384 5 HPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDD-SSGFSASADHT 82 (342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~-~~~~s~s~D~~ 82 (342)
|.|=+.-+ +.++|.++|.+|++.|-.+-++||+.|+|++|||+.++.+..+ -+|-..|..+++++. -.+++|+.|+.
T Consensus 138 HapwKl~r-Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 138 HAPWKLYR-VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred cCcceehh-hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence 44433333 3478999999999999999999999999999999999987655 469999999999854 46789999999
Q ss_pred EEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeE
Q 019384 83 VRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRL 159 (342)
Q Consensus 83 i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~ 159 (342)
|+-||++..+ .+.+.+|-..|+|++.+|.-+.|+||+.|.+||+||+++... ...+..+ ...|..+-. ..-.+
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~--V~~l~GH--~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS--VHVLSGH--TNPVASVMCQPTDPQV 292 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce--EEEecCC--CCcceeEEeecCCCce
Confidence 9999999877 456789999999999999999999999999999999986433 2233333 334444433 24479
Q ss_pred EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC
Q 019384 160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG 239 (342)
Q Consensus 160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~ 239 (342)
++++-|++|++||++.++..... .+.+..+.+++.+|....+++++.|+ ++.|++....... .+.+|..
T Consensus 293 it~S~D~tvrlWDl~agkt~~tl--t~hkksvral~lhP~e~~fASas~dn---ik~w~~p~g~f~~--nlsgh~~---- 361 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITL--THHKKSVRALCLHPKENLFASASPDN---IKQWKLPEGEFLQ--NLSGHNA---- 361 (460)
T ss_pred EEecCCceEEEeeeccCceeEee--ecccceeeEEecCCchhhhhccCCcc---ceeccCCccchhh--ccccccc----
Confidence 99999999999999987643322 23444578888999988899888774 4678885443222 2444443
Q ss_pred CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC-----C---CCcceEEEEECCCCCEEEEEEeccccCC
Q 019384 240 RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS-----K---YPTSIAALSFSRDGRLLAVASSYTFEEG 311 (342)
Q Consensus 240 ~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~-----~---~~~~V~~v~~spdg~~las~s~~~~~~~ 311 (342)
-|++++...|+ .+++|++.|.+..||.+++..-+..+ | ....|.+.+|...|..|++|..+-
T Consensus 362 -----iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadK---- 431 (460)
T KOG0285|consen 362 -----IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADK---- 431 (460)
T ss_pred -----eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCc----
Confidence 48888887764 67899999999999999875443321 1 224689999999999999987665
Q ss_pred CCCCCCCcEEEEEccC
Q 019384 312 DKPHEPDAIFVRSVNE 327 (342)
Q Consensus 312 ~~~~~~~~~~~~~~~~ 327 (342)
.|.+|+-.|
T Consensus 432 -------tIk~~keDe 440 (460)
T KOG0285|consen 432 -------TIKMYKEDE 440 (460)
T ss_pred -------ceEEEeccc
Confidence 466765443
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=229.70 Aligned_cols=272 Identities=20% Similarity=0.289 Sum_probs=206.9
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-e
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-E 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~ 93 (342)
.+.+++|+|+.++. ..++||..|+||+|||..+.. ++.+.+|.|.|.|+.|.. ..+++||.|.+|++||+.+++ .
T Consensus 194 Se~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 194 SENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cccCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchh
Confidence 45678999999864 588999999999999998754 455678999999999953 366799999999999999998 4
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc-eeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE-RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~-~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd 172 (342)
.++.+|...|..+.|+ .++++|+|.|.+|++||+.+..... +..+.. +-..+..+.++.+.|++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG--HrAaVNvVdfd~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVG--HRAAVNVVDFDDKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhh--hhhheeeeccccceEEEecCCceEEEEe
Confidence 5788999999999997 4689999999999999987644211 111222 3344666788888999999999999999
Q ss_pred CCCCCCcccccccccceeeEEEEEe-eCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384 173 LRNMSQPEQRRESSLKYQTRCVRCY-PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~ 251 (342)
+.+..... ... ++...+++. =.++.+++|+.|++++ +||+..+.. ...+++|++. |.|+.|
T Consensus 347 ~st~efvR--tl~---gHkRGIAClQYr~rlvVSGSSDntIR--lwdi~~G~c--LRvLeGHEeL---------vRciRF 408 (499)
T KOG0281|consen 347 TSTCEFVR--TLN---GHKRGIACLQYRDRLVVSGSSDNTIR--LWDIECGAC--LRVLEGHEEL---------VRCIRF 408 (499)
T ss_pred ccceeeeh--hhh---cccccceehhccCeEEEecCCCceEE--EEeccccHH--HHHHhchHHh---------hhheee
Confidence 98864322 112 223334433 2456788889888764 599865433 3446788764 899999
Q ss_pred cCCCCeEEEecCCCeEEEEeCCCce---------eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEE
Q 019384 252 HPIYGTFATGGCDGFVNVWDGNNKK---------RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFV 322 (342)
Q Consensus 252 sp~~~~l~sgs~Dg~I~iWd~~~~~---------~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~ 322 (342)
|.+.+++|+.||+|+|||...+. ++..+..|.++|..+.| |...+++++-++ .|++
T Consensus 409 --d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd-----------tILi 473 (499)
T KOG0281|consen 409 --DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD-----------TILI 473 (499)
T ss_pred --cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC-----------eEEE
Confidence 56889999999999999987532 45566789999999999 556666666555 6999
Q ss_pred EEccC
Q 019384 323 RSVNE 327 (342)
Q Consensus 323 ~~~~~ 327 (342)
|..-+
T Consensus 474 WdFl~ 478 (499)
T KOG0281|consen 474 WDFLN 478 (499)
T ss_pred EEcCC
Confidence 98764
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-31 Score=216.80 Aligned_cols=248 Identities=19% Similarity=0.228 Sum_probs=185.1
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCC-CCeEEEecCCcEEEEEeccCce
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~~~~~ 93 (342)
.+|+..|..+..++||++.+|+|+|+++|+||+.+++ .+.+.+|...|.+++|+++ .++++||-|.++++|+.-....
T Consensus 60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK 139 (315)
T ss_pred eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE
Confidence 5799999999999999999999999999999998865 4566799999999999854 5667999999999999876654
Q ss_pred eeccc--CCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEE
Q 019384 94 DILGK--HDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVN 169 (342)
Q Consensus 94 ~~~~~--h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~ 169 (342)
..+.. |++-|.|+.|+|. ...|+++|+|+++|+||+++... ...+..+.+-...+.++++|...++|+.|+.+.
T Consensus 140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence 44433 3788999999997 56899999999999999986432 222333334445567888888999999999999
Q ss_pred EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384 170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249 (342)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 249 (342)
+||++..+..... .....+.+++|+|+...++.+... . |++||+........+.+..-.... ..... -..++
T Consensus 218 LwdL~~~k~lysl---~a~~~v~sl~fspnrywL~~at~~-s--IkIwdl~~~~~v~~l~~d~~g~s~-~~~~~-~clsl 289 (315)
T KOG0279|consen 218 LWDLNEGKNLYSL---EAFDIVNSLCFSPNRYWLCAATAT-S--IKIWDLESKAVVEELKLDGIGPSS-KAGDP-ICLSL 289 (315)
T ss_pred EEEccCCceeEec---cCCCeEeeEEecCCceeEeeccCC-c--eEEEeccchhhhhhcccccccccc-ccCCc-EEEEE
Confidence 9999987653221 223457889999997766555443 3 467998654433322222111000 00111 24568
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCC
Q 019384 250 AFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 250 ~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
+|+++|..|..|-.|+.|++|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 999999999999999999999864
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.9e-31 Score=223.71 Aligned_cols=282 Identities=17% Similarity=0.221 Sum_probs=209.5
Q ss_pred CCccCC--CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCCceEEEEEeCCCCe-EEEecCCcEEE
Q 019384 10 SGRELG--NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSG-FSASADHTVRR 85 (342)
Q Consensus 10 ~~~~~~--~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~~~~~~~~~~-~s~s~D~~i~~ 85 (342)
+|+.++ .+|.+.|+++.||.||.+||||..+|.|+||+.+++.....+. .-+.+.-+.|+|...+ +.|+.||.+.+
T Consensus 95 ~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 95 TGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM 174 (399)
T ss_pred CCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEE
Confidence 455555 6899999999999999999999999999999999876555443 4556777888886665 57889999999
Q ss_pred EEeccC-ceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc
Q 019384 86 LVFSHG-KEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA 164 (342)
Q Consensus 86 w~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~ 164 (342)
|.+..+ ...++.+|+.++++-.|.|+|++++++..|++|++||+.++....... ..........++...+..++.|+.
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~-~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT-QAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec-ccccCcCCccccccccceeEeccC
Confidence 999884 467889999999999999999999999999999999998764422111 111222334445555666777777
Q ss_pred CCeEEEEeCCCCCCccccc------ccccceeeEEEEEee---CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384 165 GRHVNVYDLRNMSQPEQRR------ESSLKYQTRCVRCYP---NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK 235 (342)
Q Consensus 165 d~~v~iwd~~~~~~~~~~~------~~~~~~~~~~v~~~~---~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~ 235 (342)
++.+++-+..+++...-.. .........||.+.| .=...++++.|+++.| ||++.... +.. --|+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i--yD~a~~~~--R~~-c~he- 327 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI--YDLAASTL--RHI-CEHE- 327 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE--Eecccchh--hee-ccCC-
Confidence 7666666554443211100 011112344554443 3345689999998765 99854322 111 1122
Q ss_pred cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.+|..+.|-+ ..+|+++..||.|+.||.+++.++.++.||+..|.+++++||+++++++|.+.
T Consensus 328 --------~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 328 --------DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred --------CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 2588999988 78899999999999999999999999999999999999999999999999776
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=211.31 Aligned_cols=260 Identities=18% Similarity=0.204 Sum_probs=204.8
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCcee
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKED 94 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~ 94 (342)
...|+.|...||+..||+++.- .|||||+.++. ..+.-+|.+.|.++.|..+++. +++|.||++++||++.....
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q 118 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ 118 (311)
T ss_pred ccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc
Confidence 4589999999999999987765 69999998754 3455689999999999877775 69999999999999987666
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~ 174 (342)
....|..+|+++..+|+...|++|..+|.|++||+...... ...+...........+.+++..++.+..-|...+|++-
T Consensus 119 R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~-~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 119 RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT-HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc-cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 66778899999999999999999999999999999754321 12222222233445566778888888888999999997
Q ss_pred CCCC-----cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384 175 NMSQ-----PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249 (342)
Q Consensus 175 ~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 249 (342)
+... +..+. .....++..+.++|+++++++++.|.+++| |+..+. ......+.+|+. .+..+
T Consensus 198 ~~~~~s~l~P~~k~-~ah~~~il~C~lSPd~k~lat~ssdktv~i--wn~~~~-~kle~~l~gh~r---------WvWdc 264 (311)
T KOG0315|consen 198 NHQTASELEPVHKF-QAHNGHILRCLLSPDVKYLATCSSDKTVKI--WNTDDF-FKLELVLTGHQR---------WVWDC 264 (311)
T ss_pred CCCccccceEhhhe-ecccceEEEEEECCCCcEEEeecCCceEEE--EecCCc-eeeEEEeecCCc---------eEEee
Confidence 6321 11111 233445677779999999999999998755 887544 333455666654 68999
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE
Q 019384 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF 293 (342)
Q Consensus 250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~ 293 (342)
+||.||++|++|+.|+++++||++.++.++++.+|-..-.|++.
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99999999999999999999999999999999999877667665
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-30 Score=228.11 Aligned_cols=270 Identities=19% Similarity=0.284 Sum_probs=208.7
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCce-e
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGKE-D 94 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~~-~ 94 (342)
+....|++|+|+.+|..||+|+.||.+|||+..++.+..+-.|+++|.++.|.. +..+++++.|+++.+||..++.. .
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 345799999999999999999999999999999888777788999999999984 45678999999999999988774 4
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEe
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYD 172 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd 172 (342)
.+.-|..+-..+.|- +...|++++.|+.|.++.+....+ ...+.. |+..|.++-++ +..+++++.|++++||.
T Consensus 313 ~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P--~~t~~G--H~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRP--VKTFIG--HHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred eeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCc--ceeeec--ccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 566677776677886 456799999999999998753322 122333 44556666665 67899999999999999
Q ss_pred CCCCCCcccccccccceeeEEEEEeeCCc---------eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384 173 LRNMSQPEQRRESSLKYQTRCVRCYPNGT---------GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV 243 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~ 243 (342)
+......... ..+...+..+.|+|.|. .+++++.|+++. +||.... .....+..|+.
T Consensus 388 ~~~~~~~~~l--~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~--lwdv~~g--v~i~~f~kH~~-------- 453 (524)
T KOG0273|consen 388 MGQSNSVHDL--QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK--LWDVESG--VPIHTLMKHQE-------- 453 (524)
T ss_pred cCCCcchhhh--hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEE--EEEccCC--ceeEeeccCCC--------
Confidence 7654332211 22333456667777653 367777888764 5998544 33344545543
Q ss_pred eeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
||.+|+|+|+|+++|+|+.||.|.+|+.++++..+.+.+- +.|..++|+.+|.+|.++-++.
T Consensus 454 -pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 454 -PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred -ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCC
Confidence 8999999999999999999999999999999988887654 5699999999999988776554
No 32
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=234.96 Aligned_cols=283 Identities=19% Similarity=0.255 Sum_probs=218.9
Q ss_pred CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--ee-eeeecCCceEEEEEe-CCCCeEEEecCCcE
Q 019384 8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LR-GEFMHGGPVLDCCFH-DDSSGFSASADHTV 83 (342)
Q Consensus 8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~-~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i 83 (342)
|..+......|..+|..+.|-++...|++|+.|..|++|++..++ +. .+.+..++|+++.|. ++...++++.|+..
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 556666677899999999999999999999999999999997665 33 344677899999997 55567899999999
Q ss_pred EEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE
Q 019384 84 RRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA 162 (342)
Q Consensus 84 ~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~ 162 (342)
++|++...+. .++.+|++.|+++.|......+++|+.|.+||+||+....+. ...+ -...+..+...+..++++
T Consensus 244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~-kt~l----~~S~cnDI~~~~~~~~Sg 318 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS-KTVL----PGSQCNDIVCSISDVISG 318 (459)
T ss_pred eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee-cccc----ccccccceEecceeeeec
Confidence 9999988774 478899999999999987767999999999999999753221 1111 112233444445678889
Q ss_pred EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384 163 TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI 242 (342)
Q Consensus 163 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~ 242 (342)
..|++||+||++..... ...+....++++..++++..+++++-|..+. ++|++.......+.-.+ ...
T Consensus 319 H~DkkvRfwD~Rs~~~~---~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~--viDlRt~eI~~~~sA~g-------~k~ 386 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKT---RSVPLGGRVTSLDLSMDGLELLSSSRDDTLK--VIDLRTKEIRQTFSAEG-------FKC 386 (459)
T ss_pred ccccceEEEeccCCcee---eEeecCcceeeEeeccCCeEEeeecCCCcee--eeecccccEEEEeeccc-------ccc
Confidence 99999999999986432 2334556789999999999999888887654 58886543322221111 111
Q ss_pred eeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCc--ceEEEEECCCCCEEEEEEecc
Q 019384 243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT--SIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~--~V~~v~~spdg~~las~s~~~ 307 (342)
....+.+.|||++.++++||.||.|+||++.++++...++.... .|++++|+|-|++|++++.+.
T Consensus 387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence 12377899999999999999999999999999998877765544 499999999999999887643
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-29 Score=220.70 Aligned_cols=273 Identities=25% Similarity=0.340 Sum_probs=211.2
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccCc-
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHGK- 92 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~- 92 (342)
.+|.+.|++++|+|++++|++++.||.+++||..++. ......|...+..+.|.+++ .+++++.|+.+++|++...+
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence 3788999999999999999999999999999998764 34445788899999998766 56788899999999998754
Q ss_pred eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC--CeEEEEEcCCeEEE
Q 019384 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG--NRLVVATAGRHVNV 170 (342)
Q Consensus 93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~--~~~~~~s~d~~v~i 170 (342)
...+..|...|.++.|++++..+++++.|+.|++||+++... ...+. .+...+.++.+.+ ..+++++.++.|++
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC--LTTLR--GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE--EEEec--cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 445678888999999999988888888899999999874322 11222 2333455555544 45565666999999
Q ss_pred EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250 (342)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 250 (342)
||++..+..... . .....+.++.+.|++..+++++.++.+ .+||......... +..|. .++.+++
T Consensus 162 ~d~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~~~~~~~~i--~i~d~~~~~~~~~--~~~~~---------~~i~~~~ 226 (289)
T cd00200 162 WDLRTGKCVATL-T-GHTGEVNSVAFSPDGEKLLSSSSDGTI--KLWDLSTGKCLGT--LRGHE---------NGVNSVA 226 (289)
T ss_pred EEccccccceeE-e-cCccccceEEECCCcCEEEEecCCCcE--EEEECCCCceecc--hhhcC---------CceEEEE
Confidence 999865432221 1 223357789999999888888888765 5688854322222 22222 2689999
Q ss_pred EcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 251 FHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 251 ~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
|+|++.++++++.||.|++||..+++.+..+..|...|.+++|+|++++|++++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred EcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC
Confidence 999988899998899999999998888888889999999999999999999988665
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=2.9e-29 Score=221.87 Aligned_cols=310 Identities=20% Similarity=0.237 Sum_probs=229.1
Q ss_pred CCCccCC--CCCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCe-EEEecCCcE
Q 019384 9 TSGRELG--NPPSDGISNLRFSNHSD-HLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSG-FSASADHTV 83 (342)
Q Consensus 9 ~~~~~~~--~~~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i 83 (342)
++|-.++ .+|+..|+++.|-|... +++|||.|++|-+|+-.=-+.. +...|..-|.++.|+||+.+ ++++.|+++
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 3455566 47899999999999764 6999999999999986544433 33469999999999988775 599999999
Q ss_pred EEEEeccCce-eecc---cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE
Q 019384 84 RRLVFSHGKE-DILG---KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL 159 (342)
Q Consensus 84 ~~w~~~~~~~-~~~~---~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~ 159 (342)
.+||=.+++. ..+. +|++.|.+++|+||+++|+|+|.|+++||||..+........+.. ......+.+-+..+.|
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~-~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS-TVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC-chhceEEEEEEeCCeE
Confidence 9999777763 3454 799999999999999999999999999999997653321111111 1112234455557889
Q ss_pred EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc---------cee
Q 019384 160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK---------YAF 230 (342)
Q Consensus 160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~---------~~~ 230 (342)
++.+.+|+|.+++....+.+.. ...+...++++..+|++..+++++.||.+. -|+.......+. ..+
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~--i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~--~W~~~~g~~~~~~g~~h~nqI~~~ 369 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKV--ISGHNKSITALTVSPDGKTIYSGSYDGHIN--SWDSGSGTSDRLAGKGHTNQIKGM 369 (603)
T ss_pred EEEEcCcEEEEecccCCChhhe--ecccccceeEEEEcCCCCEEEeeccCceEE--EEecCCccccccccccccceEEEE
Confidence 9999999999999988763322 233445688999999999999999999765 476543221110 000
Q ss_pred eeEE-----------------------------ec----------CC----------------------CCceeeeeeEE
Q 019384 231 KCHR-----------------------------KS----------EA----------------------GRDIVYPVNAI 249 (342)
Q Consensus 231 ~~h~-----------------------------~~----------~~----------------------~~~~~~~v~~v 249 (342)
..+. +. .. ..+..+...++
T Consensus 370 ~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v 449 (603)
T KOG0318|consen 370 AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV 449 (603)
T ss_pred eecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence 0000 00 00 01122456789
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCCCcee--eeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384 250 AFHPIYGTFATGGCDGFVNVWDGNNKKR--LYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE 327 (342)
Q Consensus 250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~--~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
+++|++..+|.|+.||.|+||.+..... ...+..|.+.|++++||||++|||++...+ .+++|++++
T Consensus 450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r-----------kvv~yd~~s 518 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR-----------KVVLYDVAS 518 (603)
T ss_pred EEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC-----------cEEEEEccc
Confidence 9999999999999999999999886543 345678999999999999999999998777 588898887
Q ss_pred CccccCC
Q 019384 328 IEVKPKP 334 (342)
Q Consensus 328 ~~~~~~~ 334 (342)
..++.+-
T Consensus 519 ~~~~~~~ 525 (603)
T KOG0318|consen 519 REVKTNR 525 (603)
T ss_pred Cceecce
Confidence 7765543
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=9.5e-30 Score=233.23 Aligned_cols=252 Identities=18% Similarity=0.252 Sum_probs=190.4
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccCc-e
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHGK-E 93 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~-~ 93 (342)
+|...++++++||||+++|||+.||.|||||...+-+. +.-.|...|+++.|+..+ .++++|.||+|+.||+...+ .
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence 78999999999999999999999999999999887654 455799999999998554 56799999999999997765 3
Q ss_pred eecccCC-cceeEEEEeCCCCEEEEeeCCC-cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384 94 DILGKHD-APVRCIEYSYAAGQVITGSWDK-SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVY 171 (342)
Q Consensus 94 ~~~~~h~-~~V~~~~~~~~~~~l~sgs~D~-~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw 171 (342)
+++.... -+..|++..|.|..+..|+.|. .|.+|+++++.. ...+..|+.+....++++.++.+++++.|++||+|
T Consensus 428 RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql--lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL--LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee--eehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 4444322 4567899999999999999997 599999986533 23444555554445577778899999999999999
Q ss_pred eCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc----cceeeeEEec-----CCCCce
Q 019384 172 DLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK----KYAFKCHRKS-----EAGRDI 242 (342)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~----~~~~~~h~~~-----~~~~~~ 242 (342)
|+-......+. ..+...+..+++.|+|+.+++++.||.+. +||..+..+.. +..+..-++. ......
T Consensus 506 ~if~s~~~vEt--l~i~sdvl~vsfrPdG~elaVaTldgqIt--f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~ 581 (893)
T KOG0291|consen 506 DIFSSSGTVET--LEIRSDVLAVSFRPDGKELAVATLDGQIT--FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK 581 (893)
T ss_pred EeeccCceeee--EeeccceeEEEEcCCCCeEEEEEecceEE--EEEhhhceeeccccchhhccccccccceeehhhccc
Confidence 98654222221 12334567899999999999999999764 69987654431 1111111111 111222
Q ss_pred eeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384 243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~ 274 (342)
..++++++|++||..+++|+....|.|||+.+
T Consensus 582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 582 GKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred CCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 35789999999999999999999999999764
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.1e-29 Score=202.49 Aligned_cols=269 Identities=17% Similarity=0.198 Sum_probs=199.6
Q ss_pred CCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCc---eeeeee--ecCCceEEEEEeCCCCe-EEEecCCcEEEEE
Q 019384 15 GNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASAN---VLRGEF--MHGGPVLDCCFHDDSSG-FSASADHTVRRLV 87 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~---~~~~~~--~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~ 87 (342)
..+|.+.|+.++|+|- |..|||+|.|++||||+...+ .+++.+ +|+..|.+++|+|.++. ++||.|.++.+|.
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK 89 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence 3678889999999998 889999999999999999853 233332 69999999999987765 5899999999997
Q ss_pred eccCc---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEEEeccC--CeEEE
Q 019384 88 FSHGK---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYSLSLVG--NRLVV 161 (342)
Q Consensus 88 ~~~~~---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~~s~~~--~~~~~ 161 (342)
-..+. ..+++||...|.|++|+++|.+|||||-|+.+-||....+.. .....++. |.+.|-.+.+.| +.|++
T Consensus 90 k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~--HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 90 KEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE--HTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred cCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc--ccccccEEEEcCCcceeEE
Confidence 76555 346899999999999999999999999999999998763322 11222333 444454555555 78999
Q ss_pred EEcCCeEEEEeCCCCCC-c-ccccccccceeeEEEEEeeCCceEEEEccCCeEEEEE--eechhhhhcccceeeeEEecC
Q 019384 162 ATAGRHVNVYDLRNMSQ-P-EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF--FDLSEASQAKKYAFKCHRKSE 237 (342)
Q Consensus 162 ~s~d~~v~iwd~~~~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~--~d~~~~~~~~~~~~~~h~~~~ 237 (342)
+++|++|++|+-..... . .+.. ......+-+++|.+.|..+++++.|+++.|+. .++..
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~---------------- 230 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG---------------- 230 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch----------------
Confidence 99999999998663211 0 1111 12223567899999999999999999987744 22210
Q ss_pred CCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc------eee-eccCCCCcceEEEEECCC-CCEEEEEEecc
Q 019384 238 AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK------KRL-YQYSKYPTSIAALSFSRD-GRLLAVASSYT 307 (342)
Q Consensus 238 ~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~------~~~-~~~~~~~~~V~~v~~spd-g~~las~s~~~ 307 (342)
.+..++..+++. ...|||++.|+.|+|+..... +.+ ..-..|...|++++|+|. ..+|++|+.++
T Consensus 231 ---~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 231 ---MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred ---hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCc
Confidence 111257788887 568999999999999975532 112 133468889999999996 55788777665
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.4e-30 Score=237.02 Aligned_cols=276 Identities=16% Similarity=0.187 Sum_probs=215.6
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCce-
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKE- 93 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~- 93 (342)
..+..|-.|+|.|...-++++-..|+|++||..-+.++. +..|.|+|.+++|++..-+ ++|+.|-.|++|...+.+.
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence 446788899999999999999999999999998776554 4579999999999976654 6999999999999998885
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC--CeEEEEEcCCeEEEE
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG--NRLVVATAGRHVNVY 171 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~--~~~~~~s~d~~v~iw 171 (342)
..+.+|-+.|+.+.|++.-..|+|+|.|.|||||+..+... ...+..| ...|.+-.+.+ +.++++|-|.+||+|
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~--iavltGH--nHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC--IAVLTGH--NHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce--EEEEecC--ceEEEeeccCCccceEEEecccceEEEE
Confidence 46889999999999999999999999999999999876543 2344443 34566666654 689999999999999
Q ss_pred eCCCCCCc----c----c---------cc---c-------cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh
Q 019384 172 DLRNMSQP----E----Q---------RR---E-------SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ 224 (342)
Q Consensus 172 d~~~~~~~----~----~---------~~---~-------~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~ 224 (342)
|+...+.. . + .. . ..+..-++-++|+|.-..+++|+.|..+++|-|+- .+.
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne--tKa 240 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE--TKA 240 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc--ccc
Confidence 98643210 0 0 00 0 00111244568899988999999999887644443 211
Q ss_pred cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384 225 AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304 (342)
Q Consensus 225 ~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s 304 (342)
-..-..++| .++|+++-|||....++|.|+|++|||||.+..+.++++..-..+-|.++-.|...++|+|=
T Consensus 241 WEvDtcrgH---------~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 241 WEVDTCRGH---------YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH 311 (1202)
T ss_pred eeehhhhcc---------cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec
Confidence 111122333 34799999999999999999999999999999888999887778999999999999999886
Q ss_pred ecc
Q 019384 305 SYT 307 (342)
Q Consensus 305 ~~~ 307 (342)
..+
T Consensus 312 DsG 314 (1202)
T KOG0292|consen 312 DSG 314 (1202)
T ss_pred CCc
Confidence 544
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=6e-30 Score=236.05 Aligned_cols=229 Identities=27% Similarity=0.328 Sum_probs=172.6
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK- 92 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~- 92 (342)
-+|++.|+.++|+|+.++|+|+|.|+++|||.+.+.. +....+|..+|+++.|+|-+.. +|||.|++.++|......
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence 4899999999999999999999999999999998754 4455689999999999988764 699999999999987755
Q ss_pred eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172 (342)
Q Consensus 93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd 172 (342)
.+.+.+|-.-|.|+.|+|+..+++|||.|+++|+||..++.. ...+..|..+...+.++++|.++++|+.|+.|++||
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~--VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS--VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE--EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 678899999999999999999999999999999999876433 223333444444555555666677777777777777
Q ss_pred CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384 173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH 252 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 252 (342)
+.+++.. ..+.+|. +.|.++.||
T Consensus 606 l~~~~~v------------------------------------------------~~l~~Ht---------~ti~SlsFS 628 (707)
T KOG0263|consen 606 LANGSLV------------------------------------------------KQLKGHT---------GTIYSLSFS 628 (707)
T ss_pred cCCCcch------------------------------------------------hhhhccc---------CceeEEEEe
Confidence 6654211 1123342 248889999
Q ss_pred CCCCeEEEecCCCeEEEEeCCCce------------------------eeeccCCCCcceEEEEECCCCCEEEEE
Q 019384 253 PIYGTFATGGCDGFVNVWDGNNKK------------------------RLYQYSKYPTSIAALSFSRDGRLLAVA 303 (342)
Q Consensus 253 p~~~~l~sgs~Dg~I~iWd~~~~~------------------------~~~~~~~~~~~V~~v~~spdg~~las~ 303 (342)
.+|..||+|+.|.+|++||+.... ++..+..-..+|.++.|.--.-.|+.|
T Consensus 629 ~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 629 RDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 999999999999999999875321 223333334567777776655555444
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=8.5e-31 Score=212.13 Aligned_cols=242 Identities=15% Similarity=0.271 Sum_probs=192.3
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCC-CCeEEEecCCcEEEEEeccCce-
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFSHGKE- 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~~~~~- 93 (342)
++|.+.|++.+.+.+..+-||++.|-+.+|||.-++..+..+.|+..|.+|+|+.+ ..+++++.+..+|++|++..+.
T Consensus 56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence 68999999999999999999999999999999998888888899999999999854 5678999999999999988763
Q ss_pred -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384 94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172 (342)
Q Consensus 94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd 172 (342)
.-+.+|.+.|+.+.|....+.|+|++.|++||+||.++++.. ..+ ..+++.....++.+++ +++.+.++.|++||
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v--~sL-~~~s~VtSlEvs~dG~-ilTia~gssV~Fwd 211 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEV--QSL-EFNSPVTSLEVSQDGR-ILTIAYGSSVKFWD 211 (334)
T ss_pred chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEE--EEE-ecCCCCcceeeccCCC-EEEEecCceeEEec
Confidence 357899999999999998899999999999999999876432 112 2344555556666665 56677778999999
Q ss_pred CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384 173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH 252 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 252 (342)
..+...... -.++..+++.+.+|+...++++..|..+ +.||..+...... + ..++.+||.||.|+
T Consensus 212 aksf~~lKs---~k~P~nV~SASL~P~k~~fVaGged~~~--~kfDy~TgeEi~~-----~-----nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 212 AKSFGLLKS---YKMPCNVESASLHPKKEFFVAGGEDFKV--YKFDYNTGEEIGS-----Y-----NKGHFGPVHCVRFS 276 (334)
T ss_pred cccccceee---ccCccccccccccCCCceEEecCcceEE--EEEeccCCceeee-----c-----ccCCCCceEEEEEC
Confidence 988643322 2345667888899999888888887765 4577654322211 1 22445699999999
Q ss_pred CCCCeEEEecCCCeEEEEeCCCce
Q 019384 253 PIYGTFATGGCDGFVNVWDGNNKK 276 (342)
Q Consensus 253 p~~~~l~sgs~Dg~I~iWd~~~~~ 276 (342)
|+|..+++||+||+||||....++
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCCceeeccCCCceEEEEEecCCC
Confidence 999999999999999999876544
No 40
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.8e-29 Score=203.28 Aligned_cols=277 Identities=16% Similarity=0.221 Sum_probs=208.3
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~ 93 (342)
.+|+..++.|.|+.+|++|.|++.|.++.||-..+++.+. ..+|.+.|++|... ....++++++|.++++||++++++
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 5799999999999999999999999999999986666554 46899999999997 556678999999999999999998
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCC-----CcEEEEcCCCCC----C-cceeeeeecCCCCcEEEEeccCCeEEEEE
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWD-----KSLKCWDPRGAS----G-QERTLVGTYPQPERVYSLSLVGNRLVVAT 163 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D-----~~I~iWd~~~~~----~-~~~~~~~~~~~~~~v~~~s~~~~~~~~~s 163 (342)
...-....+|+.+.|+++|++++.+..+ +.|.++|++... . .+...+..........-+.+.++.|++|.
T Consensus 87 la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 87 LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 7777778899999999999887766554 578999987432 1 11122223333334445666788999999
Q ss_pred cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384 164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV 243 (342)
Q Consensus 164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~ 243 (342)
.+|.|.+||++++........ .+...++.+.++++...+++++.|.+- ++||..+-...+.|.- .
T Consensus 167 e~G~is~~da~~g~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dtta--kl~D~~tl~v~Kty~t------------e 231 (327)
T KOG0643|consen 167 EDGSISIYDARTGKELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTA--KLVDVRTLEVLKTYTT------------E 231 (327)
T ss_pred CCCcEEEEEcccCceeeechh-hhccccccccccCCcceEEecccCccc--eeeeccceeeEEEeee------------c
Confidence 999999999998754333222 223367888999999999999999876 4588865443333321 1
Q ss_pred eeeeEEEEcCCCCeEEEec-CCC-eEEEEeCCCc------------eeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 244 YPVNAIAFHPIYGTFATGG-CDG-FVNVWDGNNK------------KRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 244 ~~v~~v~~sp~~~~l~sgs-~Dg-~I~iWd~~~~------------~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.||++.+++|....++.|+ .+- .|.-=+.+.+ +.+..+++|-++|+++||+|||+..++|+.++
T Consensus 232 ~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 232 RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence 2899999999888776654 321 1222222222 33456789999999999999999999987655
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.2e-29 Score=228.59 Aligned_cols=276 Identities=17% Similarity=0.184 Sum_probs=217.2
Q ss_pred CCCCCeEEEEEc-CCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEE-eCCCCeEEEecCCcEEEEEeccCce-
Q 019384 17 PPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCF-HDDSSGFSASADHTVRRLVFSHGKE- 93 (342)
Q Consensus 17 ~~~~~V~~l~fs-~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~-~~~~~~~s~s~D~~i~~w~~~~~~~- 93 (342)
+..+.|..++|- |+.++||.++..+.+|+|++.+..+.-..+|...|.++.. ..+..++|||.|+++++|.++....
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 446889999987 4678999999999999999988777666789999999994 4454678999999999998844432
Q ss_pred ----eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCC-cceeee----eecCCCCcE--EEEeccCCeEEE
Q 019384 94 ----DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASG-QERTLV----GTYPQPERV--YSLSLVGNRLVV 161 (342)
Q Consensus 94 ----~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~-~~~~~~----~~~~~~~~v--~~~s~~~~~~~~ 161 (342)
....+|+..|.+++++..+ ..|+|+|.|.+|++|++..... .....+ ....|...+ ++++++...+++
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 2357899999999998755 6789999999999999864111 111111 111233334 455566678999
Q ss_pred EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384 162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD 241 (342)
Q Consensus 162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~ 241 (342)
|+.|++.+||++.... .......++-.+.||+|++.++.++++|.|.+++| |.+.+.+..+ .+.+|..
T Consensus 481 ~SqDktaKiW~le~~~--l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI--W~is~fSClk--T~eGH~~------ 548 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLR--LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI--WSISTFSCLK--TFEGHTS------ 548 (775)
T ss_pred cccccceeeecccCce--EEEEeeCCccceEEEEeccccceeEeccCCceEEE--EEeccceeee--eecCccc------
Confidence 9999999999998532 22222334445789999999999999999998754 8886554333 3556654
Q ss_pred eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
+|..+.|-.++..|+||+.||-|+||+++++.|+.++-.|..+||+++.+|+..++++|+++.
T Consensus 549 ---aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 549 ---AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG 611 (775)
T ss_pred ---eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCe
Confidence 688899999999999999999999999999999999999999999999999999999998876
No 42
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=234.74 Aligned_cols=246 Identities=17% Similarity=0.241 Sum_probs=184.8
Q ss_pred cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC--------------------------------ce--------
Q 019384 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA--------------------------------NV-------- 52 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~--------------------------------~~-------- 52 (342)
|+-+.|.++|+++.||+||++|||||.|+.||||.+.. ..
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 44468999999999999999999999999999999754 00
Q ss_pred ---------------------eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeC-
Q 019384 53 ---------------------LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSY- 110 (342)
Q Consensus 53 ---------------------~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~- 110 (342)
+....+|.+.|+++.|+.++.++++|.|.++|+|++........-.|.+.|+|++|+|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 0111258999999999999999999999999999999888877788999999999999
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc-------
Q 019384 111 AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR------- 183 (342)
Q Consensus 111 ~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~------- 183 (342)
|+++|+|||.|+.||||++....- ........-.+.+++.++|+..++|+.+|.+++|+.+..+......
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~V---v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKV---VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred CCCcEeecccccceEEeecCcCee---EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 668999999999999999853111 1111122334556677788899999999999999988753221100
Q ss_pred ccccceeeEEEEEeeCCc-eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec
Q 019384 184 ESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG 262 (342)
Q Consensus 184 ~~~~~~~~~~v~~~~~~~-~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs 262 (342)
.... ..++.+.+.|... .+++.+.|.+|+ +||+++.....++ ++..... .=....|+.||++|++++
T Consensus 498 k~~~-~rITG~Q~~p~~~~~vLVTSnDSrIR--I~d~~~~~lv~Kf--KG~~n~~-------SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 498 KKQG-KRITGLQFFPGDPDEVLVTSNDSRIR--IYDGRDKDLVHKF--KGFRNTS-------SQISASFSSDGKHIVSAS 565 (712)
T ss_pred cccC-ceeeeeEecCCCCCeEEEecCCCceE--EEeccchhhhhhh--cccccCC-------cceeeeEccCCCEEEEee
Confidence 1111 2588888887654 478888888765 5998654444332 3322211 123468999999999999
Q ss_pred CCCeEEEEeCC
Q 019384 263 CDGFVNVWDGN 273 (342)
Q Consensus 263 ~Dg~I~iWd~~ 273 (342)
+|..|+||+..
T Consensus 566 eDs~VYiW~~~ 576 (712)
T KOG0283|consen 566 EDSWVYIWKND 576 (712)
T ss_pred cCceEEEEeCC
Confidence 99999999964
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=223.20 Aligned_cols=248 Identities=21% Similarity=0.313 Sum_probs=192.1
Q ss_pred CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecC-CceEEEEEeC-CCCeEEEecCCcEEE
Q 019384 8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG-GPVLDCCFHD-DSSGFSASADHTVRR 85 (342)
Q Consensus 8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~-~~V~~~~~~~-~~~~~s~s~D~~i~~ 85 (342)
..+.+-..-.|...|.++.|++++..++||+.||.||+|+..-.......+|. ..|.+++|+| |..+++||.|++|++
T Consensus 127 ~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~iki 206 (464)
T KOG0284|consen 127 SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKI 206 (464)
T ss_pred eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEE
Confidence 34455555789999999999999999999999999999999766555555554 8999999985 556789999999999
Q ss_pred EEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEE
Q 019384 86 LVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVA 162 (342)
Q Consensus 86 w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~ 162 (342)
||....+ +..+.+|.--|+|++|+|...+|++||.|..|++||.+++.+. ..+. .+..+|..+.+ +++.++++
T Consensus 207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl--~tlh--~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL--ATLH--GHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh--hhhh--hccceEEEEEEcCCCCeeEEc
Confidence 9987766 5788999999999999999999999999999999999976542 2233 34455665555 56799999
Q ss_pred EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCc-eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384 163 TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD 241 (342)
Q Consensus 163 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~ 241 (342)
+.|..++++|+|+.+.... ...++..+.++.++|-.. .+.+++.|+.+..+.++....... .-.+|
T Consensus 283 skD~~~kv~DiR~mkEl~~--~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~---i~~AH-------- 349 (464)
T KOG0284|consen 283 SKDQSCKVFDIRTMKELFT--YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE---IPPAH-------- 349 (464)
T ss_pred cCCceEEEEehhHhHHHHH--hhcchhhheeeccccccccceeeccCCCceEEEeccccccccC---CCccc--------
Confidence 9999999999996533222 223444578899998754 466778899876655553221111 11233
Q ss_pred eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
...|.+++|||-|..|++|+.|.++++|...
T Consensus 350 -d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 350 -DGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred -ccceeeeeccccceeEeecCCCcceeeeccC
Confidence 3369999999999999999999999999754
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-28 Score=218.66 Aligned_cols=272 Identities=18% Similarity=0.253 Sum_probs=216.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-ee
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-ED 94 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-~~ 94 (342)
+++.|-+|.|.|...-++++-+.|.|.|||..++.+... -...-+|.++.|.....+ ++|+.|..|++++..+.+ ..
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~ 91 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK 91 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence 789999999999999999999999999999988765443 346678999999876665 588899999999999987 56
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---CeEEEEEcCCeEEEE
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---NRLVVATAGRHVNVY 171 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---~~~~~~s~d~~v~iw 171 (342)
.+..|.+.|+|++.+|...+++|+|.|.+||+||-+..-... +.+. .|...|.+++++| +.+++++-|++|++|
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~-qtfe--GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE-QTFE--GHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee-eEEc--CcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 789999999999999999999999999999999987543322 2222 3556677777764 589999999999999
Q ss_pred eCCCCCCcccccccccceeeEEEEEeeCC--ceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384 172 DLRNMSQPEQRRESSLKYQTRCVRCYPNG--TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249 (342)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 249 (342)
.+.......+ .. .+..-++||.+.+.| .++++++.|..+ ++||..+.+.. ..+.+|.. .|+.+
T Consensus 169 slgs~~~nfT-l~-gHekGVN~Vdyy~~gdkpylIsgaDD~ti--KvWDyQtk~CV--~TLeGHt~---------Nvs~v 233 (794)
T KOG0276|consen 169 SLGSPHPNFT-LE-GHEKGVNCVDYYTGGDKPYLISGADDLTI--KVWDYQTKSCV--QTLEGHTN---------NVSFV 233 (794)
T ss_pred EcCCCCCcee-ee-ccccCcceEEeccCCCcceEEecCCCceE--EEeecchHHHH--HHhhcccc---------cceEE
Confidence 9976532222 22 233347899888755 567777777765 56998654333 34556543 69999
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.|||.=..++|||+||++|||...+-+...++.--..+|||++-.+++..+++|...+
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg 291 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEG 291 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCC
Confidence 9999999999999999999999888777777766678999999999999999887643
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.7e-28 Score=224.64 Aligned_cols=273 Identities=19% Similarity=0.220 Sum_probs=213.3
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEe-C-CCCeEEEecCCcEEEEEeccCceeeccc
Q 019384 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFH-D-DSSGFSASADHTVRRLVFSHGKEDILGK 98 (342)
Q Consensus 22 V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~-~-~~~~~s~s~D~~i~~w~~~~~~~~~~~~ 98 (342)
+..+..-+....++....|.++.++|..+..+. ...+..+.|.+++|- | +..++.|+....+|+++..+.....+.+
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G 363 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG 363 (775)
T ss_pred hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC
Confidence 566555666667777888999999999876654 445788999999996 4 4567799999999999999888889999
Q ss_pred CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--Eecc-CCeEEEEEcCCeEEEEeCCC
Q 019384 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLV-GNRLVVATAGRHVNVYDLRN 175 (342)
Q Consensus 99 h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~-~~~~~~~s~d~~v~iwd~~~ 175 (342)
|+..|.+++...+|.+|+|||.|+++++|.++..............+...+.+ ++.. ...+++++.|.++++|++..
T Consensus 364 H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred chhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 99999999955567799999999999999774322211111111223334444 4332 35899999999999999986
Q ss_pred CCC---ccc----ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384 176 MSQ---PEQ----RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248 (342)
Q Consensus 176 ~~~---~~~----~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 248 (342)
.+. +.. .....+.-.++||++.|++..++++|.|.+.+ +|++. .....-.+.+|.. .|.+
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK--iW~le--~~~l~~vLsGH~R---------Gvw~ 510 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK--IWDLE--QLRLLGVLSGHTR---------GVWC 510 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee--eeccc--CceEEEEeeCCcc---------ceEE
Confidence 211 111 11223445689999999999999999999875 58875 2334456777776 4999
Q ss_pred EEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
|.|+|..+.++|+|.|+||+||.+++..+++++.||...|..++|-.+|+.|+++++++
T Consensus 511 V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG 569 (775)
T KOG0319|consen 511 VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG 569 (775)
T ss_pred EEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999876
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.7e-28 Score=223.63 Aligned_cols=274 Identities=19% Similarity=0.242 Sum_probs=216.0
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-e
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-E 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-~ 93 (342)
-+|...|.+++||.+...++||+ .+.++||+..+.+++.++... -+.++.|.|++. +++|...|.+.++|+.... .
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred ccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence 58899999999999987777765 458999999988777766544 788999987665 5688899999999998876 4
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC-----CCCcceeee---eecCCCCcEEE--EeccCCeEEEEE
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG-----ASGQERTLV---GTYPQPERVYS--LSLVGNRLVVAT 163 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~-----~~~~~~~~~---~~~~~~~~v~~--~s~~~~~~~~~s 163 (342)
..+..|.+.|++++.+||+..++|||.|++|++||..- ++......+ ...+.+..+.+ +++++..++++-
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 56779999999999999999999999999999999641 111000011 11123344554 455577899999
Q ss_pred cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384 164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV 243 (342)
Q Consensus 164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~ 243 (342)
-|.+|++|=+.+.+.-.... .++.++.|+..+||++.+++++.|.++.+|=.|..+ ....+-+|+.
T Consensus 528 LdnTVkVyflDtlKFflsLY--GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD----CHKS~fAHdD-------- 593 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLY--GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD----CHKSFFAHDD-------- 593 (888)
T ss_pred ccCeEEEEEecceeeeeeec--ccccceeEEeccCCcCeEEeccCCCceEEeccccch----hhhhhhcccC--------
Confidence 99999999888764332222 344568899999999999999999988764444422 2223445554
Q ss_pred eeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
.|++|.|-|...++.+||.|+.|+-||.++.+.++.+.+|...|+|++.+|+|.+++++|.+
T Consensus 594 -Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 594 -SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred -ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999874
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.8e-28 Score=228.16 Aligned_cols=246 Identities=23% Similarity=0.288 Sum_probs=189.4
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEEC-CCce-eeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDA-SANV-LRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK 92 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~-~~~~-~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~ 92 (342)
.+|...|+.++|+|++.++++++.|++|||||+ ..+. ++.+.+|...|++++|++.+. +++|+.|++|++|++.+++
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 679999999999999999999999999999999 4434 455669999999999997764 5699999999999999976
Q ss_pred -eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC--CCcEEEEeccCCeEEEEEcCCeEE
Q 019384 93 -EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ--PERVYSLSLVGNRLVVATAGRHVN 169 (342)
Q Consensus 93 -~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~v~~~s~~~~~~~~~s~d~~v~ 169 (342)
.+.+.+|.+.|.+++|++++..|++++.|+.|++||+.++.......+..... ....+.++.++..+++++.|++++
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 56889999999999999999999999999999999998654210112222222 234556677788999999999999
Q ss_pred EEeCCCCCCcccccccccc-eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384 170 VYDLRNMSQPEQRRESSLK-YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248 (342)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 248 (342)
+||++..........+... .-+.....++.+..+++++.|+.+ ++||....... ..+.+|. ..++..
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v--~~~~~~s~~~~--~~l~~h~--------~~~~~~ 427 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV--YVWDSSSGGIL--QRLEGHS--------KAAVSD 427 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceE--EEEeCCccchh--hhhcCCC--------CCceec
Confidence 9999987554433332222 112223346788999999999876 45998653222 2344442 125788
Q ss_pred EEEcCCCCeEEEec--CCCeEEEEeCC
Q 019384 249 IAFHPIYGTFATGG--CDGFVNVWDGN 273 (342)
Q Consensus 249 v~~sp~~~~l~sgs--~Dg~I~iWd~~ 273 (342)
++++|..+++++++ .|+.|++|..+
T Consensus 428 ~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 428 LSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999998 68899999754
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=195.40 Aligned_cols=242 Identities=17% Similarity=0.262 Sum_probs=173.9
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--ee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccC
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHG 91 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~ 91 (342)
..|...|.+++|+|.|++||+||.|.|+-||.-..+. .. .+-+|...|.+++|+.++. +++||-|..+.+|.....
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 5788999999999999999999999999999976543 33 3348999999999996555 569999999999988755
Q ss_pred ce----eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC-CCCcceeeeeecCCCCcEEEEec--cCCeEEEEEc
Q 019384 92 KE----DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG-ASGQERTLVGTYPQPERVYSLSL--VGNRLVVATA 164 (342)
Q Consensus 92 ~~----~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~-~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~ 164 (342)
.+ ..+..|+.-|..+.|+|...+|+|+|+|.+||+|+-.. ..=.....+.. ++.++.+++| .++++++++.
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSD 215 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecC
Confidence 53 36889999999999999999999999999999997652 21122223333 3346666665 4679999999
Q ss_pred CCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceee
Q 019384 165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVY 244 (342)
Q Consensus 165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~ 244 (342)
|++++||-+.+.-.. -.+..+..+++. ...++++..|+.+.+ |-....-....+.+..+... .|..
T Consensus 216 D~tv~Iw~~~~~~~~------~~sr~~Y~v~W~--~~~IaS~ggD~~i~l--f~~s~~~d~p~~~l~~~~~~----aHe~ 281 (312)
T KOG0645|consen 216 DGTVSIWRLYTDLSG------MHSRALYDVPWD--NGVIASGGGDDAIRL--FKESDSPDEPSWNLLAKKEG----AHEV 281 (312)
T ss_pred CcceEeeeeccCcch------hcccceEeeeec--ccceEeccCCCEEEE--EEecCCCCCchHHHHHhhhc----cccc
Confidence 999999987643111 111234456666 445777777777655 43322111112222221111 1112
Q ss_pred eeeEEEEcCC-CCeEEEecCCCeEEEEeCC
Q 019384 245 PVNAIAFHPI-YGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 245 ~v~~v~~sp~-~~~l~sgs~Dg~I~iWd~~ 273 (342)
.|++|+|.|. .++|++|+.||+|++|.++
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 5999999995 6789999999999999764
No 49
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.1e-27 Score=191.33 Aligned_cols=287 Identities=17% Similarity=0.232 Sum_probs=210.1
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee---eeecCCceEEEEEe--CCCCeEEEecCCcEEEEEeccC
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---EFMHGGPVLDCCFH--DDSSGFSASADHTVRRLVFSHG 91 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~---~~~h~~~V~~~~~~--~~~~~~s~s~D~~i~~w~~~~~ 91 (342)
+|...|.+|+|+.+|.+|++|+.|+++++|++...+++. ..+|.+.|-.++|. ....+++++.|.+|++||..++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 567899999999999999999999999999997654332 34799999999986 3557789999999999999988
Q ss_pred ceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEE
Q 019384 92 KEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVN 169 (342)
Q Consensus 92 ~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~ 169 (342)
+......-+..=.-+.|+|+|++++.+..|..|...|.++... ....+..-.+..+++ +.+.++..+.-|+|.
T Consensus 98 k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~-----~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 98 KCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI-----VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred cEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccce-----eehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 7543222222333578999999999999999999999875322 222222222333443 445555555558999
Q ss_pred EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384 170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249 (342)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 249 (342)
|......+.. +. ..+++..-.|+.+.|+|+++++|+.|..+. +||..+---.+. +. .+..||+++
T Consensus 173 ILsypsLkpv-~s-i~AH~snCicI~f~p~GryfA~GsADAlvS--LWD~~ELiC~R~--is---------RldwpVRTl 237 (313)
T KOG1407|consen 173 ILSYPSLKPV-QS-IKAHPSNCICIEFDPDGRYFATGSADALVS--LWDVDELICERC--IS---------RLDWPVRTL 237 (313)
T ss_pred EEeccccccc-cc-cccCCcceEEEEECCCCceEeeccccceee--ccChhHhhhhee--ec---------cccCceEEE
Confidence 9887654322 21 123344567888999999999999998765 599865322222 21 123589999
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN 326 (342)
Q Consensus 250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~ 326 (342)
.||-+|++||+||+|..|-|=++++|..+.+.+ +.++-+.+||.|...+||-++.+- +++.-.+-..+.++.++
T Consensus 238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk--~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK--DGDSNREAGTVKIFGLS 311 (313)
T ss_pred EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC--CCccccccceeEEecCC
Confidence 999999999999999999999999999888765 678889999999999999888654 22223333355566553
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-28 Score=198.35 Aligned_cols=231 Identities=18% Similarity=0.255 Sum_probs=177.9
Q ss_pred CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCc--eeeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEEecc
Q 019384 16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASAN--VLRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLVFSH 90 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~--~~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~~~ 90 (342)
-.-+++++.|+|++. .+.+++++.||++||||+... -+.....|+.+|.++.|.+ ...+++.|.|++|++|+...
T Consensus 57 ~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 57 YDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred eecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 345789999999985 578899999999999997432 2444567999999999973 34467889999999999877
Q ss_pred Cc-eeecccCCcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec---cCCeEEEEEcC
Q 019384 91 GK-EDILGKHDAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL---VGNRLVVATAG 165 (342)
Q Consensus 91 ~~-~~~~~~h~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~---~~~~~~~~s~d 165 (342)
++ ..++.+|...|++.+|+|. .+.|+++|.|+++++||++...+ . +.+..+. .++.++++ +.+.+++++.|
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-~-~~i~ah~--~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-F-MSIEAHN--SEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-e-eEEEecc--ceeEeecccccCCcEEEecCCC
Confidence 66 5678999999999999994 57899999999999999986533 2 3344333 34666655 35688999999
Q ss_pred CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384 166 RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP 245 (342)
Q Consensus 166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~ 245 (342)
+.|+.||+|+.+.+. +.+.+| ..+
T Consensus 213 ~~vr~wDir~~r~pl-----------------------------------------------~eL~gh---------~~A 236 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPL-----------------------------------------------FELNGH---------GLA 236 (311)
T ss_pred ceEEEEehhhccccc-----------------------------------------------eeecCC---------ceE
Confidence 999999999864321 001122 236
Q ss_pred eeEEEEcCCC-CeEEEecCCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCC-CCEEEEEEecc
Q 019384 246 VNAIAFHPIY-GTFATGGCDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRD-GRLLAVASSYT 307 (342)
Q Consensus 246 v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spd-g~~las~s~~~ 307 (342)
|+.|+|||.. ..|||++.|-++||||.+.+ .++.+...|+..|..+.||+- +.++|++ ++|
T Consensus 237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~-gWD 300 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST-GWD 300 (311)
T ss_pred EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec-ccc
Confidence 8899999975 47899999999999998844 456777889999999999995 4466554 444
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.9e-27 Score=205.69 Aligned_cols=268 Identities=21% Similarity=0.276 Sum_probs=200.7
Q ss_pred CCCeEEEEEcCCCCe-EEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCeEE-EecCCcEEEEEeccCc-ee
Q 019384 19 SDGISNLRFSNHSDH-LLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFS-ASADHTVRRLVFSHGK-ED 94 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~-l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~~s-~s~D~~i~~w~~~~~~-~~ 94 (342)
.+.|.+|+|||...+ +|++| .-++.||+..+...+. ....+..|.+++|-.|+.++. |...|.|+++|..++. .+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 578999999996543 55443 4479999987654333 345788999999987777764 5567899999955533 45
Q ss_pred ecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec---cCCeEEEEEcCCeEEE
Q 019384 95 ILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL---VGNRLVVATAGRHVNV 170 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~---~~~~~~~~s~d~~v~i 170 (342)
.+..|+.+|..+.|+|++ ..|++|+.|+.+++||+.+.. .+. ....++..+-+.++ +++.+++|++||+||+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v~~--~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--VQA--ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--EEE--EecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 678999999999999966 567889999999999997543 221 22234455555544 3458999999999999
Q ss_pred EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250 (342)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 250 (342)
||.|...... .+..+..++..+.+.|.|..+++++.. .+++||+....+ ....+..|.+ .|+|++
T Consensus 181 ~DtR~~~~~v--~elnhg~pVe~vl~lpsgs~iasAgGn---~vkVWDl~~G~q-ll~~~~~H~K---------tVTcL~ 245 (487)
T KOG0310|consen 181 WDTRSLTSRV--VELNHGCPVESVLALPSGSLIASAGGN---SVKVWDLTTGGQ-LLTSMFNHNK---------TVTCLR 245 (487)
T ss_pred EEeccCCcee--EEecCCCceeeEEEcCCCCEEEEcCCC---eEEEEEecCCce-ehhhhhcccc---------eEEEEE
Confidence 9999863222 233445568888899998888777643 357799864322 2222333554 699999
Q ss_pred EcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 251 FHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 251 ~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
+..++..|.+||.|+.|++||+.+.+.+..+. .+++|.+++.|||++.++.|-+++
T Consensus 246 l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 246 LASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred eecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccc
Confidence 99999999999999999999998888887764 779999999999999999998876
No 52
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-27 Score=202.39 Aligned_cols=235 Identities=19% Similarity=0.199 Sum_probs=182.2
Q ss_pred eecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC
Q 019384 57 FMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG 134 (342)
Q Consensus 57 ~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~ 134 (342)
.+|..+|+.+.|.|+..+ ++|+.|++|++||..+++ +..+.+|++.|..++|+..|++++++|.|-.+++||.+...
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~- 183 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF- 183 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH-
Confidence 357788999999887655 588899999999999988 56789999999999999999999999999999999986421
Q ss_pred cceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384 135 QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM 214 (342)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i 214 (342)
.....+..+++....+.+-+.++++++++.|.+|+.|++.++-...+.. +.+..+..+...-||..+++++.+.++++
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~--~h~ewvr~v~v~~DGti~As~s~dqtl~v 261 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP--GHSEWVRMVRVNQDGTIIASCSNDQTLRV 261 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc--CchHhEEEEEecCCeeEEEecCCCceEEE
Confidence 1111222333444445566678999999999999999999875433322 33345677778888888888888888776
Q ss_pred EEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC---------------CCeEEEecCCCeEEEEeCCCceeee
Q 019384 215 EFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI---------------YGTFATGGCDGFVNVWDGNNKKRLY 279 (342)
Q Consensus 215 ~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~---------------~~~l~sgs~Dg~I~iWd~~~~~~~~ 279 (342)
|.....+.. ..++.| .++|-+++|-|. +++++++|.|++|++||+.++.++.
T Consensus 262 W~~~t~~~k----~~lR~h---------Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 262 WVVATKQCK----AELREH---------EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred EEeccchhh----hhhhcc---------ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence 544432221 223333 347888887662 2589999999999999999999999
Q ss_pred ccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 280 QYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 280 ~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
++.+|.+.|..++|+|-|+||+++..+.
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDK 356 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCC
Confidence 9999999999999999999999887643
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=3.7e-27 Score=195.58 Aligned_cols=241 Identities=22% Similarity=0.223 Sum_probs=186.5
Q ss_pred CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCC-Ce-EEEecCCcEEEEEeccC
Q 019384 15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDS-SG-FSASADHTVRRLVFSHG 91 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~-~~-~s~s~D~~i~~w~~~~~ 91 (342)
.++|+++|..|.|.+|+..|+|+|.|++++.||..+++. +....|.+-|+.+....-+ ++ .+++.|+++++||++++
T Consensus 86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 369999999999999999999999999999999998864 4556788889988855333 33 48899999999999987
Q ss_pred ceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384 92 KEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVY 171 (342)
Q Consensus 92 ~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw 171 (342)
.......-..+++++.|..++..+.+|+-|+.|++||++..... ..+..+..+.+-++++..+..+++-+-|.++++|
T Consensus 166 ~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~--~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvw 243 (338)
T KOG0265|consen 166 EAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL--YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVW 243 (338)
T ss_pred chhhccccceeEEEEEecccccceeeccccCceeeeccccCcce--EEeecccCceeeEEeccCCCccccccccceEEEE
Confidence 75544445678999999999999999999999999999865442 2334444444445566677899999999999999
Q ss_pred eCCCCCCccc---cc-cc--ccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384 172 DLRNMSQPEQ---RR-ES--SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP 245 (342)
Q Consensus 172 d~~~~~~~~~---~~-~~--~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~ 245 (342)
|++-...... .. .. .+..+...++|+|++..+-.++.|..+ ++||.. .....|.+.+|.. .
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v--yvwd~~--~r~~lyklpGh~g---------s 310 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV--YVWDTT--SRRILYKLPGHYG---------S 310 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE--EEeecc--cccEEEEcCCcce---------e
Confidence 9986532211 11 11 112223456789999999999988865 569973 2345567777765 6
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEE
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVW 270 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iW 270 (342)
|+++.|+|...+|.+++.|++|++=
T Consensus 311 vn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 311 VNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EEEeeecCCCcEEEEeccCceeEee
Confidence 9999999999999999999999873
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.1e-28 Score=204.06 Aligned_cols=269 Identities=19% Similarity=0.264 Sum_probs=199.9
Q ss_pred CCCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384 16 NPPSDGISNLRFSNHS-DHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~ 93 (342)
.+|.++|++++-.|.. ..+|||+.||.|+|||+.... +.....|.|.|.++++.. ...++++.|.+++.|-+.....
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~ 141 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPL 141 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcc
Confidence 6899999999999987 779999999999999998765 455668999999999976 6689999999999998776433
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---CeEEEEEcCCeEEE
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---NRLVVATAGRHVNV 170 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---~~~~~~s~d~~v~i 170 (342)
..+. -...+..++-+..+..++||+. .|-|||.+...+.....+ ....+.++.+++ +.|+++..|+.|.|
T Consensus 142 ~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smsw----G~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 142 HTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSW----GADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred eeee-ccccccccccccccccccccCc--eeeecccccCCccceeec----CCCceeEEecCCCcchheeeeccCCceEE
Confidence 2222 2245666776767778999886 789999865443222222 223455566654 36778889999999
Q ss_pred EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250 (342)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 250 (342)
||+|... +..+. .+...++.++|.|+.-.+++++.|-. ++.||.+.-..+ +..|. +|+.+|..|.
T Consensus 215 yD~R~~~-Pl~KV--i~~mRTN~IswnPeafnF~~a~ED~n--lY~~DmR~l~~p----~~v~~------dhvsAV~dVd 279 (433)
T KOG0268|consen 215 YDLRQAS-PLKKV--ILTMRTNTICWNPEAFNFVAANEDHN--LYTYDMRNLSRP----LNVHK------DHVSAVMDVD 279 (433)
T ss_pred EecccCC-cccee--eeeccccceecCccccceeecccccc--ceehhhhhhccc----chhhc------ccceeEEEec
Confidence 9999864 32222 34456788999997777777777664 567888643221 22222 4455899999
Q ss_pred EcCCCCeEEEecCCCeEEEEeCCCceeeec-cCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 251 FHPIYGTFATGGCDGFVNVWDGNNKKRLYQ-YSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 251 ~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
|||.|+.+++||.|.+||||.+..+..-.. ++.....|.|+.||-|.+|+.+||.+.
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence 999999999999999999999886543322 234455799999999999999988655
No 55
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.4e-26 Score=202.00 Aligned_cols=299 Identities=17% Similarity=0.203 Sum_probs=218.7
Q ss_pred CCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee----e-------------e--eecCCceEEEE
Q 019384 7 PPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR----G-------------E--FMHGGPVLDCC 67 (342)
Q Consensus 7 ~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~----~-------------~--~~h~~~V~~~~ 67 (342)
|....+-+..+|.-.|.+++++|+..++.+++.|++|.=|++.+++.. . . ..|.+.+.+++
T Consensus 130 ~~s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a 209 (479)
T KOG0299|consen 130 PESSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA 209 (479)
T ss_pred cccccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence 333444455788999999999999999999999999999998665411 0 0 16788899999
Q ss_pred EeCCCCe-EEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC
Q 019384 68 FHDDSSG-FSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ 145 (342)
Q Consensus 68 ~~~~~~~-~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~ 145 (342)
.+++++. ++++.|..+.+|+.++.+ ...+.+|.+.|.+++|-.....++++|.|++|++|+++.... .. ..+.|
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~--ve--tlyGH 285 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY--VE--TLYGH 285 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH--HH--HHhCC
Confidence 9977765 689999999999999988 456799999999999998788999999999999999863211 01 22345
Q ss_pred CCcEEEEecc-CCeEEEE-EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh
Q 019384 146 PERVYSLSLV-GNRLVVA-TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS 223 (342)
Q Consensus 146 ~~~v~~~s~~-~~~~~~~-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~ 223 (342)
+..+..++.. ....+++ ..|+++++|++....+..- . +....+.|+++-.+ ..+++|+.+|.+. +|++...+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlif--r-g~~~sidcv~~In~-~HfvsGSdnG~Ia--LWs~~KKk 359 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIF--R-GGEGSIDCVAFIND-EHFVSGSDNGSIA--LWSLLKKK 359 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccccceeee--e-CCCCCeeeEEEecc-cceeeccCCceEE--EeeecccC
Confidence 6667777764 3455555 4899999999955432221 1 22335677766544 5689999999875 59885432
Q ss_pred hcccceeeeEEecCCC--CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc----eeeeccCCCCcceEEEEECCCC
Q 019384 224 QAKKYAFKCHRKSEAG--RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK----KRLYQYSKYPTSIAALSFSRDG 297 (342)
Q Consensus 224 ~~~~~~~~~h~~~~~~--~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~----~~~~~~~~~~~~V~~v~~spdg 297 (342)
...... ..|.-.... ......|++++..|...++|+||.+|.||+|-++++ .++..++ ..+.|++++|+++|
T Consensus 360 plf~~~-~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 360 PLFTSR-LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSG 437 (479)
T ss_pred ceeEee-ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCC
Confidence 222111 233322211 111237999999999999999999999999998876 3345554 66889999999999
Q ss_pred CEEEEEEeccccCCCCCCCC
Q 019384 298 RLLAVASSYTFEEGDKPHEP 317 (342)
Q Consensus 298 ~~las~s~~~~~~~~~~~~~ 317 (342)
++|++|..-..+-|++.+.+
T Consensus 438 k~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred CEEEEecccccccceeeEee
Confidence 99999988777777764433
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=199.76 Aligned_cols=276 Identities=16% Similarity=0.190 Sum_probs=210.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee---------eeecCCceEEEEEeCCCC-eEEEecCCcEEEEEe
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---------EFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVF 88 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~---------~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~ 88 (342)
..-+-|..|||||++|+|||-||-|.|||..+++++. ...+.++|.|++|+.|.. +++|+.||.|++|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 4567899999999999999999999999998877543 224788999999996665 469999999999999
Q ss_pred ccCce-eec-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384 89 SHGKE-DIL-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR 166 (342)
Q Consensus 89 ~~~~~-~~~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~ 166 (342)
.++.+ +.+ ..|+..|+|+.|+.|+..++++|.|.++|+--+.++... ..+..+..-..-..+..+|+.+++++.|+
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L--KEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL--KEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH--HHhcCccccccceEEcCCCCeEEEecCCc
Confidence 99884 344 589999999999999999999999999999998765431 12222222222334667888999999999
Q ss_pred eEEEEeCCCCCCcccccccccceeeEEEEEeeCCc-eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384 167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP 245 (342)
Q Consensus 167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~ 245 (342)
+|++|+..+.+.............++.+...|.+. .++++...+++ ++.+... +..+.+. .+.+ + .+.
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv--~imn~qG-QvVrsfs-SGkR--E-----gGd 439 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV--YIMNMQG-QVVRSFS-SGKR--E-----GGD 439 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE--EEEeccc-eEEeeec-cCCc--c-----CCc
Confidence 99999999876654444444456677777777654 45666655554 4455521 1122221 1111 1 124
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.-+++.||.|.++.+.++|+.++.+.+.+++.-+++.-|...|..++-.|-.++||+=+.++
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccc
Confidence 56778999999999999999999999999998888999999999999999999999876654
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.2e-27 Score=192.42 Aligned_cols=261 Identities=16% Similarity=0.192 Sum_probs=189.9
Q ss_pred CCCccCC--CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCC-----
Q 019384 9 TSGRELG--NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADH----- 81 (342)
Q Consensus 9 ~~~~~~~--~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~----- 81 (342)
.+|+-|+ .+|...|+++..+-+.++|+||+.|.+++|||+.+++.+.+..-..+|..+.|+.++.++.++.|.
T Consensus 40 ~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~ 119 (327)
T KOG0643|consen 40 LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYT 119 (327)
T ss_pred cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcc
Confidence 4788888 699999999999999999999999999999999999999888888999999999888888777664
Q ss_pred -cEEEEEeccCc--------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384 82 -TVRRLVFSHGK--------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL 152 (342)
Q Consensus 82 -~i~~w~~~~~~--------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~ 152 (342)
.|.+++++... ...+.-+.+.++.+-|.|-++.|++|..||.|.+||.+++... ......+.....-..+
T Consensus 120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-v~s~~~h~~~Ind~q~ 198 (327)
T KOG0643|consen 120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL-VDSDEEHSSKINDLQF 198 (327)
T ss_pred eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-eechhhhccccccccc
Confidence 57788876332 2345567789999999999999999999999999999865321 1111223333333445
Q ss_pred eccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh-cccceee
Q 019384 153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ-AKKYAFK 231 (342)
Q Consensus 153 s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~-~~~~~~~ 231 (342)
+.+...+++++.|.+-++||+++....... ....++++.+++|....+++++......+.--+.+..+- .+-+.+-
T Consensus 199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty---~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i 275 (327)
T KOG0643|consen 199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTY---TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI 275 (327)
T ss_pred cCCcceEEecccCccceeeeccceeeEEEe---eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence 556678999999999999999986443221 122357788899988877777655444332222211110 0101110
Q ss_pred eEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
..++...-..|.+||++|+|||+|+.++||++||+||+.-.+
T Consensus 276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 111111224566799999999999999999999999998544
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-27 Score=202.92 Aligned_cols=246 Identities=20% Similarity=0.253 Sum_probs=182.6
Q ss_pred cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecC--CceEEEEEeCCCC-eEEEecCCcEEEEEec
Q 019384 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG--GPVLDCCFHDDSS-GFSASADHTVRRLVFS 89 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~--~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~ 89 (342)
+...+|...|..+.||||.++|++++.|..+++||+.++.++..+.++ ..+.+|+|.||+. +++|+.|+++..|+++
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 344789999999999999999999999999999999999888877655 7899999987765 5799999999999998
Q ss_pred cCceeecccC-CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384 90 HGKEDILGKH-DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV 168 (342)
Q Consensus 90 ~~~~~~~~~h-~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v 168 (342)
........+- ...|.+++.++||+.+++...|..|++++.++... +... ...++....+++-+++.+++.-.+.++
T Consensus 343 gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--r~li-se~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 343 GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--RGLI-SEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh--hccc-cccCceeEEEEcCCCcEEEEEcccCee
Confidence 7665444443 36799999999999999999999999999764221 1111 222334445556667788888999999
Q ss_pred EEEeCCCCCCcccccccccc-eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384 169 NVYDLRNMSQPEQRRESSLK-YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247 (342)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~ 247 (342)
++||+...........+... +-+.++.-.-+...+++||.|+++ ++|+.... ...-.+.+|.+ .|+
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv--yIWhr~sg--kll~~LsGHs~---------~vN 486 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV--YIWHRISG--KLLAVLSGHSK---------TVN 486 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE--EEEEccCC--ceeEeecCCcc---------eee
Confidence 99999864332222111111 222322223445678999999976 56987543 23344566654 699
Q ss_pred EEEEcCCCC-eEEEecCCCeEEEEeCCC
Q 019384 248 AIAFHPIYG-TFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 248 ~v~~sp~~~-~l~sgs~Dg~I~iWd~~~ 274 (342)
+|+|+|... ++|+||.||+||||....
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999754 899999999999997653
No 59
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.3e-25 Score=209.91 Aligned_cols=267 Identities=12% Similarity=0.110 Sum_probs=183.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee--------------eeeecCCceEEEEEeC-CC-CeEEEecCC
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR--------------GEFMHGGPVLDCCFHD-DS-SGFSASADH 81 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~--------------~~~~h~~~V~~~~~~~-~~-~~~s~s~D~ 81 (342)
+-..|....+++++..+++++.+..+..|+..++... ...+|.+.|.+++|+| ++ .+++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3456667777888888889999999999986543211 2457999999999987 54 567999999
Q ss_pred cEEEEEeccCc--------eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE-
Q 019384 82 TVRRLVFSHGK--------EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS- 151 (342)
Q Consensus 82 ~i~~w~~~~~~--------~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~- 151 (342)
+|++|++.... ...+.+|...|.+++|+|++ +.|+||+.|++|+|||++++.. ...+.. +...+.+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--~~~l~~--h~~~V~sl 174 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--VEVIKC--HSDQITSL 174 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--EEEEcC--CCCceEEE
Confidence 99999997642 23578899999999999975 6899999999999999975432 122222 3334544
Q ss_pred -EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC--CeEEEEEeechhhhhcccc
Q 019384 152 -LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE--GRVAMEFFDLSEASQAKKY 228 (342)
Q Consensus 152 -~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~--~~~~i~~~d~~~~~~~~~~ 228 (342)
++.+++.+++++.|++|++||+++++.... ...+.......+.+.+++..+++++.+ .+..+++||.+.......
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~t-l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~- 252 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS- 252 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCCCcEEEE-EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee-
Confidence 455677899999999999999998643221 111111223455677777766654321 223456799864322111
Q ss_pred eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec-CCCeEEEEeCCCceeeeccC-CCCcceEEEEECCCCC
Q 019384 229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG-CDGFVNVWDGNNKKRLYQYS-KYPTSIAALSFSRDGR 298 (342)
Q Consensus 229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iWd~~~~~~~~~~~-~~~~~V~~v~~spdg~ 298 (342)
....+. ...+....|++++.+|++|+ .|++|++||+.+++.+.... .+...+..++|.|.-.
T Consensus 253 ~~~~d~--------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 253 TVDLDQ--------SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred EeccCC--------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc
Confidence 111111 11355667999999998887 59999999999887665443 2445678888888533
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=188.46 Aligned_cols=241 Identities=24% Similarity=0.287 Sum_probs=187.7
Q ss_pred eeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce---eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEc
Q 019384 54 RGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE---DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWD 128 (342)
Q Consensus 54 ~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~---~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd 128 (342)
+.+.+|.+.|.+++|. ++..+++++.|+++.+|.++..+. ....+|++.|-+++|.|.. ++|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3445799999999997 555678999999999999887652 3467899999999999854 7899999999999999
Q ss_pred CCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc
Q 019384 129 PRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV 208 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 208 (342)
.+.+++..+ ...........+++++++++.+..|..|.+.|.++.+..... ..+..++.++|+.++..++..+.
T Consensus 94 ~r~~k~~~~---i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGKCTAR---IETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---QFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred eccCcEEEE---eeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh---cccceeeeeeecCCCCEEEEecC
Confidence 987654211 112233445678888999999999999999999986432211 23345666778877777777777
Q ss_pred CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce
Q 019384 209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI 288 (342)
Q Consensus 209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V 288 (342)
.|.+.| .... .......+++|.. ..-||.|+|+|++||+|+.|-.+-+||++..-+++.++.+.-+|
T Consensus 168 lG~v~I--Lsyp--sLkpv~si~AH~s---------nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV 234 (313)
T KOG1407|consen 168 LGCVEI--LSYP--SLKPVQSIKAHPS---------NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPV 234 (313)
T ss_pred CceEEE--Eecc--ccccccccccCCc---------ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCce
Confidence 788766 3332 2344566777753 36678999999999999999999999999888888999999999
Q ss_pred EEEEECCCCCEEEEEEeccc------cCCCC
Q 019384 289 AALSFSRDGRLLAVASSYTF------EEGDK 313 (342)
Q Consensus 289 ~~v~~spdg~~las~s~~~~------~~~~~ 313 (342)
..++||-||++||++|.+.+ ++|++
T Consensus 235 RTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 235 RTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred EEEEeccCcceeeccCccceEEeEecccCCe
Confidence 99999999999999998533 55664
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=8.1e-27 Score=197.12 Aligned_cols=237 Identities=16% Similarity=0.252 Sum_probs=180.0
Q ss_pred cCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcce
Q 019384 59 HGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQER 137 (342)
Q Consensus 59 h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~ 137 (342)
..+.|+|+.+ +|..+++|.-|.+|++||..... ...+.||++.|.|+.|. ...|+|||.|.||++||.+++...
T Consensus 196 ~skgVYClQY-DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l-- 270 (499)
T KOG0281|consen 196 NSKGVYCLQY-DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL-- 270 (499)
T ss_pred cCCceEEEEe-cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh--
Confidence 4567899988 46678999999999999987766 45789999999999985 468999999999999999876542
Q ss_pred eeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcc-cccccccceeeEEEEEeeCCceEEEEccCCeEEEEE
Q 019384 138 TLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE-QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF 216 (342)
Q Consensus 138 ~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~ 216 (342)
. ....+...+..+-++.+.+++++.|.++.+||+....... .+....+...++.|.+. .+++++++.|.++ +.
T Consensus 271 ~--tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi--kv 344 (499)
T KOG0281|consen 271 N--TLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI--KV 344 (499)
T ss_pred h--HHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE--EE
Confidence 1 1223556678888888999999999999999998764221 11112223334555443 4578888888765 56
Q ss_pred eechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCC
Q 019384 217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296 (342)
Q Consensus 217 ~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spd 296 (342)
|++.+.. ....+.+|+. .|.|+.+ .++++++||.|.+|++||++.|.+++.++||..-|.++.| |
T Consensus 345 W~~st~e--fvRtl~gHkR---------GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d 409 (499)
T KOG0281|consen 345 WSTSTCE--FVRTLNGHKR---------GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D 409 (499)
T ss_pred Eecccee--eehhhhcccc---------cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--c
Confidence 8886543 3344667765 3666666 5889999999999999999999999999999999999999 4
Q ss_pred CCEEEEEEeccccCCCCCCCCCcEEEEEccCCccccC
Q 019384 297 GRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPK 333 (342)
Q Consensus 297 g~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (342)
.+.+++|..++ +|.+|.+. -+-.||
T Consensus 410 ~krIVSGaYDG-----------kikvWdl~-aaldpr 434 (499)
T KOG0281|consen 410 NKRIVSGAYDG-----------KIKVWDLQ-AALDPR 434 (499)
T ss_pred Cceeeeccccc-----------eEEEEecc-cccCCc
Confidence 57788888777 69999883 334443
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=6.2e-25 Score=219.64 Aligned_cols=248 Identities=15% Similarity=0.159 Sum_probs=175.7
Q ss_pred CCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeC-CC-CeEEEecCCcEEEEEeccCcee
Q 019384 19 SDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHD-DS-SGFSASADHTVRRLVFSHGKED 94 (342)
Q Consensus 19 ~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~-~~-~~~s~s~D~~i~~w~~~~~~~~ 94 (342)
...|.+++|++ ++.+||+++.||+|+|||+.++... ....|.+.|++++|++ ++ .+++|+.|++|++||+.++...
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 45789999987 4789999999999999999876544 4457999999999984 44 4679999999999999877643
Q ss_pred ecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEEEEEcCCeEEEEe
Q 019384 95 ILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYD 172 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd 172 (342)
....+...|.++.|++ ++..|++|+.|++|++||+++.... ...+. .+...+..+.+ +++.+++++.|++|++||
T Consensus 612 ~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~-~~~~~--~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 612 GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP-LCTMI--GHSKTVSYVRFVDSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc-ceEec--CCCCCEEEEEEeCCCEEEEEECCCEEEEEe
Confidence 2222346799999964 6889999999999999999754321 11122 23344555555 567899999999999999
Q ss_pred CCCCCC-----cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecC--CCCceeee
Q 019384 173 LRNMSQ-----PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSE--AGRDIVYP 245 (342)
Q Consensus 173 ~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~--~~~~~~~~ 245 (342)
++.... +.... ..+...+.++++++++..+++++.|+.+.+ |+.........+.+....... ....+...
T Consensus 689 ~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~~~lasgs~D~~v~i--w~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 689 LSMSISGINETPLHSF-MGHTNVKNFVGLSVSDGYIATGSETNEVFV--YHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred CCCCccccCCcceEEE-cCCCCCeeEEEEcCCCCEEEEEeCCCEEEE--EECCCCCceEEEecccCCcccccccCCCCcE
Confidence 975321 11111 122334577889999999999999998754 775432111111111000000 00122236
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDG 272 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~ 272 (342)
|++++|+|++.+|++|+.||+|+||++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999999985
No 63
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=8.4e-25 Score=204.53 Aligned_cols=203 Identities=18% Similarity=0.190 Sum_probs=148.5
Q ss_pred CCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCce--------eeeeeecCCceEEEEEeCCC--CeEEEecCCcEE
Q 019384 16 NPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANV--------LRGEFMHGGPVLDCCFHDDS--SGFSASADHTVR 84 (342)
Q Consensus 16 ~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~--------~~~~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~ 84 (342)
.+|.+.|++++|+| ++++|||||.|++|+|||+..+. +....+|...|.+++|+|.. .+++++.|++|+
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 57899999999999 88999999999999999986532 33456799999999999753 467999999999
Q ss_pred EEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC-cEEEEeccCCeEEEE
Q 019384 85 RLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE-RVYSLSLVGNRLVVA 162 (342)
Q Consensus 85 ~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~-~v~~~s~~~~~~~~~ 162 (342)
+||+.++.. ..+.+|...|.+++|+|++.+|++++.|++|++||++++.. ...+..+.... ....+..+.+.++++
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI--VSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE--EEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999988763 45778999999999999999999999999999999986432 12222222211 122234445566655
Q ss_pred E----cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhh
Q 019384 163 T----AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEA 222 (342)
Q Consensus 163 s----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~ 222 (342)
+ .|+.|++||+++...+...........+....+++++..+++++. |+.+ ++||+...
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I--riwdl~~~ 292 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI--RCFELMNE 292 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE--EEEEeeCC
Confidence 4 468999999987654432221111122334567889888888764 6654 66998643
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=197.73 Aligned_cols=237 Identities=25% Similarity=0.319 Sum_probs=180.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEeC-CCCe-EEEecCCcEEEEEeccCce
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFHD-DSSG-FSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~-~~~~-~s~s~D~~i~~w~~~~~~~ 93 (342)
...+.|+++.|-.||.+||.|...|.|+|||.++. .++...+|+.+|..+.|++ ++++ ++|+.|+.+++||+.+...
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 45689999999999999999999999999996553 3566778999999999984 4444 5788888999999998875
Q ss_pred e-ecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEE
Q 019384 94 D-ILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVN 169 (342)
Q Consensus 94 ~-~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~ 169 (342)
. .+.+|++.|+|.+|+|... .++|||+||+||+||+++.+. .+....+...+-.+.+ ++..|++|+ +..|+
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~----~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vk 220 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS----RVVELNHGCPVESVLALPSGSLIASAG-GNSVK 220 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc----eeEEecCCCceeeEEEcCCCCEEEEcC-CCeEE
Confidence 4 5789999999999999654 789999999999999987542 1223334444544444 344555544 45899
Q ss_pred EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384 170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249 (342)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 249 (342)
+||+.++.+....... +.-.++|+.+..++..+++++.|+.+++ ||+..-+....+. ..+||.++
T Consensus 221 VWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~rLlS~sLD~~VKV--fd~t~~Kvv~s~~------------~~~pvLsi 285 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFN-HNKTVTCLRLASDSTRLLSGSLDRHVKV--FDTTNYKVVHSWK------------YPGPVLSI 285 (487)
T ss_pred EEEecCCceehhhhhc-ccceEEEEEeecCCceEeecccccceEE--EEccceEEEEeee------------cccceeeE
Confidence 9999876554433332 2335889999889999999999998755 8864332222222 23489999
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCC
Q 019384 250 AFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 250 ~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
+.+|+++.++.|..||.+-+=+..
T Consensus 286 avs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 286 AVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred EecCCCceEEEecccceeeeehhh
Confidence 999999999999999988776444
No 65
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=189.63 Aligned_cols=235 Identities=24% Similarity=0.333 Sum_probs=189.4
Q ss_pred ecCCceEEEEEeCCCCeE-EEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCc
Q 019384 58 MHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135 (342)
Q Consensus 58 ~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~ 135 (342)
+|.+-|.++++.|.++++ +++.|+++++||+.++.. ..+.+|-..|..+++++...++++++.|+.|+-||++...
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-- 226 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-- 226 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh--
Confidence 699999999999888875 899999999999999985 4678999999999999999999999999999999997432
Q ss_pred ceeee-eecCCCCcEEEEeccC--CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeE
Q 019384 136 ERTLV-GTYPQPERVYSLSLVG--NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV 212 (342)
Q Consensus 136 ~~~~~-~~~~~~~~v~~~s~~~--~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~ 212 (342)
.+ ..+.+-..|.+++..+ +.+++++.|.++|+||+|+...... ...+...+..|.+-|.+..++++|.|+++
T Consensus 227 ---vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~--l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 227 ---VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV--LSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred ---hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE--ecCCCCcceeEEeecCCCceEEecCCceE
Confidence 22 2334556678888764 5899999999999999998643221 22344567788888888889999999987
Q ss_pred EEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEE
Q 019384 213 AMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALS 292 (342)
Q Consensus 213 ~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~ 292 (342)
+ +||++.... ...+..|.+ .|++++.+|.-..+|+++.| .|+-|++-.+..++.+.+|...|++++
T Consensus 302 r--lWDl~agkt--~~tlt~hkk---------svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 302 R--LWDLRAGKT--MITLTHHKK---------SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS 367 (460)
T ss_pred E--EeeeccCce--eEeeecccc---------eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeee
Confidence 5 699965432 233455554 59999999998899999988 789999999999999999999999999
Q ss_pred ECCCCCEEEEEEe------ccccCCCCC
Q 019384 293 FSRDGRLLAVASS------YTFEEGDKP 314 (342)
Q Consensus 293 ~spdg~~las~s~------~~~~~~~~~ 314 (342)
.+.||.+++ |+. ++|+.|-++
T Consensus 368 ~nsD~v~~~-G~dng~~~fwdwksg~ny 394 (460)
T KOG0285|consen 368 VNSDGVLVS-GGDNGSIMFWDWKSGHNY 394 (460)
T ss_pred eccCceEEE-cCCceEEEEEecCcCccc
Confidence 999998765 543 555555543
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=6.8e-26 Score=198.82 Aligned_cols=242 Identities=19% Similarity=0.334 Sum_probs=185.3
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC--CeEEEecCCcEEEEEeccCce
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS--SGFSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~~w~~~~~~~ 93 (342)
-+|...|.+++|+.+|..++|+|.|+++++||+.+|.....+.-...++|+.|.|++ .+++|+.|+.|+.||+++++.
T Consensus 255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 478999999999999999999999999999999999887766556677899998765 357899999999999999883
Q ss_pred -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384 94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172 (342)
Q Consensus 94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd 172 (342)
..+..|-+.|..+.|-+++.+++|++.|++++||+.+.+-... .......+....+.+.+++..++.-+-|+.|-+|.
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch-hhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 4567788999999999999999999999999999986532211 11122234555666777778888889999999998
Q ss_pred CCCCCCcc--ccc-ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384 173 LRNMSQPE--QRR-ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249 (342)
Q Consensus 173 ~~~~~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 249 (342)
+...-... .++ .+...+-...+.|+|||.++++|..+|.+. +||..+.+... .+++|.+ ++..+
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~--~wdwkt~kl~~--~lkah~~---------~ci~v 480 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN--FWDWKTTKLVS--KLKAHDQ---------PCIGV 480 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE--Eeechhhhhhh--ccccCCc---------ceEEE
Confidence 65432111 111 112223345688999999999999999764 58876544332 3445533 68889
Q ss_pred EEcCCC-CeEEEecCCCeEEEEe
Q 019384 250 AFHPIY-GTFATGGCDGFVNVWD 271 (342)
Q Consensus 250 ~~sp~~-~~l~sgs~Dg~I~iWd 271 (342)
.|||.- ..+|+|++||.|++||
T Consensus 481 ~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EecCCCcceeEecccCceeEecC
Confidence 999974 4799999999999996
No 67
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=5e-25 Score=210.02 Aligned_cols=276 Identities=20% Similarity=0.233 Sum_probs=200.5
Q ss_pred CCCeEEEEEcCCCCeEEEEe--CCCcEEEEECCC------------ce-eeeeeecCCceEEEEEeCCCC-eEEEecCCc
Q 019384 19 SDGISNLRFSNHSDHLLVSS--WDKSVRLYDASA------------NV-LRGEFMHGGPVLDCCFHDDSS-GFSASADHT 82 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s--~Dgti~vwd~~~------------~~-~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~ 82 (342)
...|++|..+|++..+|||+ .|+.++||+..- .+ +-....|.+.|+|+.|+++++ +++||.|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 44599999999999999999 999999999641 11 223346999999999997776 568999999
Q ss_pred EEEEEecc----------Cc---------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec
Q 019384 83 VRRLVFSH----------GK---------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY 143 (342)
Q Consensus 83 i~~w~~~~----------~~---------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~ 143 (342)
|.+|.... +. ...+.+|...|..++|+|++.+|+|+|.|++|.+|+.++.. ....+..|
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~--~~~vl~~H 170 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE--LLKVLRGH 170 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce--eeeeeecc
Confidence 99998872 11 12567899999999999999999999999999999987642 23344555
Q ss_pred CCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc----ccccceeeEEEEEeeCCceEEEEcc--CCeEEEEEe
Q 019384 144 PQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR----ESSLKYQTRCVRCYPNGTGYALSSV--EGRVAMEFF 217 (342)
Q Consensus 144 ~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~s~--~~~~~i~~~ 217 (342)
.....-+.+++.|.+|++-+.|++|++|+..+-....... .......+..++|+|||+++++... ++.-.+.++
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 5455555677778899999999999999965532211110 1122344667899999999876632 222233334
Q ss_pred echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC-----CC------------eEEEecCCCeEEEEeCCCceeeec
Q 019384 218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI-----YG------------TFATGGCDGFVNVWDGNNKKRLYQ 280 (342)
Q Consensus 218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~-----~~------------~l~sgs~Dg~I~iWd~~~~~~~~~ 280 (342)
+-. ...-...+.+|.+ |+.+++|+|. .+ .+|+||.|++|-||.....+++..
T Consensus 251 eR~--tWk~~~~LvGH~~---------p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 251 ERG--TWKVDKDLVGHSA---------PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV 319 (942)
T ss_pred ecC--CceeeeeeecCCC---------ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence 321 1111234555654 7999999982 11 579999999999999877776544
Q ss_pred cC-CCCcceEEEEECCCCCEEEEEEecc
Q 019384 281 YS-KYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 281 ~~-~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.. -....|.+|+|||||..|.++|.++
T Consensus 320 i~~lf~~SI~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 320 IHNLFNKSIVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred hhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence 32 2345799999999999999898765
No 68
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.5e-24 Score=202.60 Aligned_cols=226 Identities=15% Similarity=0.102 Sum_probs=157.8
Q ss_pred CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCce---------eeeeeecCCceEEEEEeCCCC-e-EEEecCCcE
Q 019384 16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANV---------LRGEFMHGGPVLDCCFHDDSS-G-FSASADHTV 83 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~---------~~~~~~h~~~V~~~~~~~~~~-~-~s~s~D~~i 83 (342)
..|.+.|.+++|+|+ +++|||||.|++|+|||+..+. +....+|.+.|.+++|+|++. + ++++.|++|
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence 578999999999997 7899999999999999986531 123457999999999998664 3 588999999
Q ss_pred EEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE-----EeccCCe
Q 019384 84 RRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS-----LSLVGNR 158 (342)
Q Consensus 84 ~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~-----~s~~~~~ 158 (342)
++||+.++.......|...|.+++|+|+|.+|++++.|++|+|||++++.. ...+..+........ ++.+++.
T Consensus 151 rIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~--i~tl~gH~g~~~s~~v~~~~fs~d~~~ 228 (568)
T PTZ00420 151 NIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI--ASSFHIHDGGKNTKNIWIDGLGGDDNY 228 (568)
T ss_pred EEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE--EEEEecccCCceeEEEEeeeEcCCCCE
Confidence 999998877433224667899999999999999999999999999986432 122333322211111 2234567
Q ss_pred EEEEEcCC----eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEE
Q 019384 159 LVVATAGR----HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234 (342)
Q Consensus 159 ~~~~s~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~ 234 (342)
+++++.|+ +|+|||+++...+... + . .|. .
T Consensus 229 IlTtG~d~~~~R~VkLWDlr~~~~pl~~-----------~------------~---------ld~--~------------ 262 (568)
T PTZ00420 229 ILSTGFSKNNMREMKLWDLKNTTSALVT-----------M------------S---------IDN--A------------ 262 (568)
T ss_pred EEEEEcCCCCccEEEEEECCCCCCceEE-----------E------------E---------ecC--C------------
Confidence 88877664 6999999864221100 0 0 000 0
Q ss_pred ecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee--eeccCCCCcceEEEEECCCCC
Q 019384 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR--LYQYSKYPTSIAALSFSRDGR 298 (342)
Q Consensus 235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~--~~~~~~~~~~V~~v~~spdg~ 298 (342)
...+...-..+++.+|++|+.|++|++|++..+.. +..+ .+..++.+++|.|+..
T Consensus 263 --------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~-~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 263 --------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEY-KSCSPFRSFGFLPKQI 319 (568)
T ss_pred --------ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccc-ccCCCccceEEccccc
Confidence 00122222345688899999999999999976542 2222 2556789999999755
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.6e-24 Score=184.24 Aligned_cols=282 Identities=15% Similarity=0.185 Sum_probs=192.6
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCce
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~ 93 (342)
..|.+.|++++.+|+.+.++||+.|....||++.++.... ..+|++.|+++.|+.++++ +||..+|.+++|...++..
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce
Confidence 4789999999999999999999999999999999887544 4589999999999966665 6899999999999998874
Q ss_pred e-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384 94 D-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172 (342)
Q Consensus 94 ~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd 172 (342)
. .+..-...|.=+.|+|.+..|+.|+.||.+-+|.+.+. ... ..+..+....+.-.|.++|++++++..|++|++||
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~-kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALC-KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-cee-eEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 3 34344456777889999999999999999999998753 222 33444444444556888899999999999999999
Q ss_pred CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh--------hhcccceeeeEEecCCCCceee
Q 019384 173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA--------SQAKKYAFKCHRKSEAGRDIVY 244 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~--------~~~~~~~~~~h~~~~~~~~~~~ 244 (342)
..+..... +....-.....|+.+...+..+..++.++.+.+ .+.... ..+.. ...+.. ...
T Consensus 219 ~ktg~p~~-~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~--~~~~sgKVv~~~n~~~~~l--~~~~e~------~~e 287 (399)
T KOG0296|consen 219 PKTGQPLH-KITQAEGLELPCISLNLAGSTLTKGNSEGVACG--VNNGSGKVVNCNNGTVPEL--KPSQEE------LDE 287 (399)
T ss_pred cCCCceeE-EecccccCcCCccccccccceeEeccCCccEEE--EccccceEEEecCCCCccc--cccchh------hhh
Confidence 99874322 221111111233333333333333333333211 111100 00000 001111 111
Q ss_pred eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe------ccccCCC
Q 019384 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS------YTFEEGD 312 (342)
Q Consensus 245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~------~~~~~~~ 312 (342)
.|-++.++..=...|+|+.||+|-|||....+..+.+ .|...|..+.|-+ -.+|++++. |+.+.|+
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence 2344445555567799999999999999876544444 4888899999998 566677776 5667777
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.6e-24 Score=201.77 Aligned_cols=261 Identities=19% Similarity=0.244 Sum_probs=201.3
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eee-eeecCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCce-
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRG-EFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGKE- 93 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~-~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~~- 93 (342)
+...|.+..|. .+++++++.|.+|++||...+. ++. ..+|.+.|.+++|.. +..+++|+.|.++++||..++..
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 45678888888 5789999999999999998775 444 679999999999974 66788999999999999998884
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL 173 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~ 173 (342)
..+.+|...|.++... ..++++||.|.+|++|+++++.. ...+.. +...|.++..+++.++++++|++|++||+
T Consensus 285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~--l~l~~~--h~~~V~~v~~~~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGAC--LNLLRG--HTGPVNCVQLDEPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcce--EEEecc--ccccEEEEEecCCEEEEEecCceEEEEEh
Confidence 5678999999999875 46788999999999999985432 222322 55678888888999999999999999999
Q ss_pred CCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC
Q 019384 174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP 253 (342)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp 253 (342)
++++..... ..+...+.++.+... ..++.++.|..+ ++||+.... .....+.+|... |+.+.+
T Consensus 359 ~~~~cl~sl--~gH~~~V~sl~~~~~-~~~~Sgs~D~~I--kvWdl~~~~-~c~~tl~~h~~~---------v~~l~~-- 421 (537)
T KOG0274|consen 359 RTGKCLKSL--SGHTGRVYSLIVDSE-NRLLSGSLDTTI--KVWDLRTKR-KCIHTLQGHTSL---------VSSLLL-- 421 (537)
T ss_pred hhceeeeee--cCCcceEEEEEecCc-ceEEeeeeccce--EeecCCchh-hhhhhhcCCccc---------cccccc--
Confidence 976543222 234455677655544 778999999866 459986542 334555666542 344433
Q ss_pred CCCeEEEecCCCeEEEEeCCCceeeeccCC-CCcceEEEEECCCCCEEEEEEe
Q 019384 254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSK-YPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~V~~v~~spdg~~las~s~ 305 (342)
.+++|++++.|++|++||.+++++++.+++ |...|.++++. +. .+++++.
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~-~il~s~~ 472 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KE-EILCSSD 472 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cc-eEEEEec
Confidence 578899999999999999999999999988 67889999998 33 3444443
No 71
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=8.9e-25 Score=193.15 Aligned_cols=290 Identities=14% Similarity=0.146 Sum_probs=206.6
Q ss_pred CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--eeeee----eecCCceEEEEEeC-CCCeEEEecC
Q 019384 8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--VLRGE----FMHGGPVLDCCFHD-DSSGFSASAD 80 (342)
Q Consensus 8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~~~~~----~~h~~~V~~~~~~~-~~~~~s~s~D 80 (342)
|..-+--...|+..|.++++.|.|-+|+|||.|-+|++||...- ..+.. ......|.++.|++ +++++..+..
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 33333334566789999999999999999999999999998652 12211 12345789999984 5566677777
Q ss_pred CcEEEEEeccCcee-------------ecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeec---
Q 019384 81 HTVRRLVFSHGKED-------------ILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTY--- 143 (342)
Q Consensus 81 ~~i~~w~~~~~~~~-------------~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~--- 143 (342)
.-.+++|-+..... ...||...++|.+|+|+. +.|+|++.|+++||||+.....+.+.+....
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 77788876544311 235899999999999976 5789999999999999975443322221111
Q ss_pred -CCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCC-ccccc-ccccc-eeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384 144 -PQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ-PEQRR-ESSLK-YQTRCVRCYPNGTGYALSSVEGRVAMEFFDL 219 (342)
Q Consensus 144 -~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~-~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~ 219 (342)
......+.++.++..|++|..||.|.+||.+.... +.... ..+.+ ..++|++|+.+|+.+++-+.|+++ ++||+
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL--KvWDL 393 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL--KVWDL 393 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce--eeeec
Confidence 12234455666778899999999999999865322 11111 11222 358999999999999999998875 56999
Q ss_pred hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec------CCCeEEEEeCCCceeeeccCCCCcceEEEEE
Q 019384 220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG------CDGFVNVWDGNNKKRLYQYSKYPTSIAALSF 293 (342)
Q Consensus 220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs------~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~ 293 (342)
+........ . .+....++-..|+|||+.+.|++|. .-|++.+||..+...+..+.-....|..+.|
T Consensus 394 rq~kkpL~~-~-------tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W 465 (641)
T KOG0772|consen 394 RQFKKPLNV-R-------TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLW 465 (641)
T ss_pred cccccchhh-h-------cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEee
Confidence 765443211 0 1112234567799999999999985 3668999999998888777656788999999
Q ss_pred CCCCCEEEEEEecc
Q 019384 294 SRDGRLLAVASSYT 307 (342)
Q Consensus 294 spdg~~las~s~~~ 307 (342)
.|-=+.|.+|++++
T Consensus 466 hpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 466 HPKLNQIFAGSGDG 479 (641)
T ss_pred cchhhheeeecCCC
Confidence 99877777788754
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.8e-25 Score=198.09 Aligned_cols=243 Identities=16% Similarity=0.177 Sum_probs=186.6
Q ss_pred cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeee-cCCceEEEEEeCCCCeEEEecCCcEEEEEecc
Q 019384 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFM-HGGPVLDCCFHDDSSGFSASADHTVRRLVFSH 90 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~-h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~ 90 (342)
+|+..+.+.|++|.|+++|++||.|-.+|+|.|||....+ ...... |...|-+++|. ...+.+|+.|+.|..+|+..
T Consensus 211 ~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 211 ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEec
Confidence 4555558999999999999999999999999999997765 344445 89999999997 44567899999999999988
Q ss_pred Cce--eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEEEE--E
Q 019384 91 GKE--DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLVVA--T 163 (342)
Q Consensus 91 ~~~--~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~~~--s 163 (342)
... .++.+|...|..+.|++|+.+||+|+.|+.+.|||...... ...+.. +...|.++++. .+.||+| +
T Consensus 290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p--~~~~~~--H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP--KFTFTE--HTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc--cEEEec--cceeeeEeeeCCCccCceEEcCCC
Confidence 762 35789999999999999999999999999999999843222 222333 33444444444 4567775 6
Q ss_pred cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384 164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV 243 (342)
Q Consensus 164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~ 243 (342)
+|++|++||..++.... ......++..+.|++..+.++++-......|.+|+... ..+...+.+|..
T Consensus 366 ~D~~i~fwn~~~g~~i~---~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~-------- 432 (484)
T KOG0305|consen 366 ADRCIKFWNTNTGARID---SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTS-------- 432 (484)
T ss_pred cccEEEEEEcCCCcEec---ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeecCCcc--------
Confidence 77899999998764322 22344678999999998888777554444566788754 233344556654
Q ss_pred eeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384 244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~ 274 (342)
.|..++++|||..+++|+.|.++++|++-+
T Consensus 433 -RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 433 -RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred -eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 699999999999999999999999998765
No 73
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-24 Score=173.99 Aligned_cols=248 Identities=15% Similarity=0.148 Sum_probs=185.3
Q ss_pred eeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384 53 LRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 53 ~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~ 130 (342)
+.....|+++|.++.|. +++..++|+.|.++++|+.-.+. ...+.+|...|..++.+.|+..|++|+.|+.|.+||+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 34445689999999998 55566899999999999987776 45788999999999999999999999999999999998
Q ss_pred CCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCC-cccccccccceeeEEEEEeeCCceEEEEc
Q 019384 131 GASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQ-PEQRRESSLKYQTRCVRCYPNGTGYALSS 207 (342)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~s 207 (342)
++... ..+..+ ...+..+.++ ...+++++-|..+++||-|..+. |++..... ...+.++ .-.+..++.++
T Consensus 90 TGkv~--Rr~rgH--~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si--~v~~heIvaGS 162 (307)
T KOG0316|consen 90 TGKVD--RRFRGH--LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSI--DVAEHEIVAGS 162 (307)
T ss_pred cCeee--eecccc--cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEE--EecccEEEeec
Confidence 75432 233333 3445555554 45789999999999999987543 22322211 1123333 33445688999
Q ss_pred cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcc
Q 019384 208 VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTS 287 (342)
Q Consensus 208 ~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 287 (342)
.||+++ .||++....... ....||++++|+++++.+..++.|+++|+-|-++++.++.+++|.+.
T Consensus 163 ~DGtvR--tydiR~G~l~sD-------------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ 227 (307)
T KOG0316|consen 163 VDGTVR--TYDIRKGTLSSD-------------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM 227 (307)
T ss_pred cCCcEE--EEEeecceeehh-------------hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc
Confidence 999875 488864422111 12248999999999999999999999999999999999999999874
Q ss_pred e--EEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCccccC
Q 019384 288 I--AALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPK 333 (342)
Q Consensus 288 V--~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (342)
- ...+++....++++||.++ .+++|++.+..+.+|
T Consensus 228 eykldc~l~qsdthV~sgSEDG-----------~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 228 EYKLDCCLNQSDTHVFSGSEDG-----------KVYFWDLVDETQISK 264 (307)
T ss_pred eeeeeeeecccceeEEeccCCc-----------eEEEEEeccceeeee
Confidence 4 5667788888899888766 477777765544444
No 74
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=1.6e-23 Score=182.64 Aligned_cols=237 Identities=23% Similarity=0.319 Sum_probs=177.0
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEe-cCCcEEEEEeccCc-
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSAS-ADHTVRRLVFSHGK- 92 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s-~D~~i~~w~~~~~~- 92 (342)
..|...+..+.|++++++|++++.||.|++||+.+++ ......|...|.++.|.+++.++.++ .|+.+.+|++.+.+
T Consensus 48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (289)
T cd00200 48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127 (289)
T ss_pred ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE
Confidence 4677888999999999999999999999999998754 34445688899999999777666555 49999999998655
Q ss_pred eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEE
Q 019384 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNV 170 (342)
Q Consensus 93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~i 170 (342)
...+..|...|.+++|+|++.++++++.|+.|++||+++.... ..+..+ ...+.++.+ +++.+++++.++.+++
T Consensus 128 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV--ATLTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc--eeEecC--ccccceEEECCCcCEEEEecCCCcEEE
Confidence 3456679999999999999888888888999999998753321 222222 223444444 4558888998999999
Q ss_pred EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250 (342)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 250 (342)
||++........ ......+.++.++|++..+++++.++.+ ++||....... ..+..|. ..|.+++
T Consensus 204 ~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~i--~i~~~~~~~~~--~~~~~~~---------~~i~~~~ 268 (289)
T cd00200 204 WDLSTGKCLGTL--RGHENGVNSVAFSPDGYLLASGSEDGTI--RVWDLRTGECV--QTLSGHT---------NSVTSLA 268 (289)
T ss_pred EECCCCceecch--hhcCCceEEEEEcCCCcEEEEEcCCCcE--EEEEcCCceeE--EEccccC---------CcEEEEE
Confidence 999875332211 1223357788999998777777767765 56887543221 2222332 2589999
Q ss_pred EcCCCCeEEEecCCCeEEEEe
Q 019384 251 FHPIYGTFATGGCDGFVNVWD 271 (342)
Q Consensus 251 ~sp~~~~l~sgs~Dg~I~iWd 271 (342)
|+|++..|++++.||.|++|+
T Consensus 269 ~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 269 WSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ECCCCCEEEEecCCCeEEecC
Confidence 999999999999999999996
No 75
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.8e-24 Score=177.01 Aligned_cols=279 Identities=18% Similarity=0.201 Sum_probs=188.0
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-----eeeeeecCCceEEEEEeCCCC-e-EEEecCCcEEEE
Q 019384 14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-----LRGEFMHGGPVLDCCFHDDSS-G-FSASADHTVRRL 86 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-----~~~~~~h~~~V~~~~~~~~~~-~-~s~s~D~~i~~w 86 (342)
...+|++.|++++||+||.+|||++.|++||||++..-. .+.....-+..+.+.|.||-+ + +++-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 346899999999999999999999999999999997532 111112234568899987765 3 344455678888
Q ss_pred EeccCcee-------------ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe
Q 019384 87 VFSHGKED-------------ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS 153 (342)
Q Consensus 87 ~~~~~~~~-------------~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s 153 (342)
-+...+.. .-..|.-.|..+-.-..+.+|+|++.|.+|.|||++. +....+........-..++
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG---q~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG---QLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC---ceeeeeccccccccceeeC
Confidence 76544321 1134555566665555678899999999999999872 1112222222334456789
Q ss_pred ccCCeEEEEEcCCeEEEEeCCC---CCCcccccc---cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh----
Q 019384 154 LVGNRLVVATAGRHVNVYDLRN---MSQPEQRRE---SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS---- 223 (342)
Q Consensus 154 ~~~~~~~~~s~d~~v~iwd~~~---~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~---- 223 (342)
++|..+++++-.-+|++|.+-= +......+. ..+...+..++|+++....++.|.||+.++ ||+.-..
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri--wdtdVrY~~~q 315 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI--WDTDVRYEAGQ 315 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE--eeccceEecCC
Confidence 9999999998888999998632 211111111 122233567789999999999999998765 6653211
Q ss_pred h---cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC-CCCcceEEEEECCCCCE
Q 019384 224 Q---AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS-KYPTSIAALSFSRDGRL 299 (342)
Q Consensus 224 ~---~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~V~~v~~spdg~~ 299 (342)
. .+......|.. +. .|+ .++.+|.|+.||.+. ..+++++..++++..-.++ -|...|.+++|+|||++
T Consensus 316 Dpk~Lk~g~~pl~aa---g~---~p~-RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAA---GS---EPV-RLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY 387 (420)
T ss_pred CchHhhcCCcchhhc---CC---Cce-EEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcE
Confidence 1 11111111111 11 134 689999999887653 4479999998887665554 58889999999999999
Q ss_pred EEEEEe
Q 019384 300 LAVASS 305 (342)
Q Consensus 300 las~s~ 305 (342)
+|+++.
T Consensus 388 ~atcGd 393 (420)
T KOG2096|consen 388 IATCGD 393 (420)
T ss_pred Eeeecc
Confidence 998874
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.6e-25 Score=187.91 Aligned_cols=237 Identities=19% Similarity=0.227 Sum_probs=181.6
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee--eecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce-
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE--FMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE- 93 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~--~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~- 93 (342)
+.+.|.|++||.|...||||+.||.|+||.+.++.++.. .+|...|+|+.|+ ++.++++++.|.++++.-+..++.
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L 341 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL 341 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence 468999999999999999999999999999998865433 4799999999999 556778999999999999998884
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC---cEEEEeccCCeEEEEEcCCeEEE
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE---RVYSLSLVGNRLVVATAGRHVNV 170 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~---~v~~~s~~~~~~~~~s~d~~v~i 170 (342)
.-+.+|+..|+...|+++|..++++|.||+|++|+..+..+. ..+....... .+.-+..++..+++|...+++.+
T Consensus 342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~--~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i 419 (508)
T KOG0275|consen 342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL--STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI 419 (508)
T ss_pred HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhh--hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence 468999999999999999999999999999999998764431 1121111112 23334446778999999999999
Q ss_pred EeCCCCCCccccccc--ccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384 171 YDLRNMSQPEQRRES--SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248 (342)
Q Consensus 171 wd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 248 (342)
.++... ....... ...+...+...+|.|..+.+.+.|+-. +.|..... .....+..|.+. |-.
T Consensus 420 mn~qGQ--vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vl--YCF~~~sG--~LE~tl~VhEkd---------vIG 484 (508)
T KOG0275|consen 420 MNMQGQ--VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVL--YCFSVLSG--KLERTLPVHEKD---------VIG 484 (508)
T ss_pred Eeccce--EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEE--EEEEeecC--ceeeeeeccccc---------ccc
Confidence 988642 1121111 112344556689999999998888854 55666433 344556677764 556
Q ss_pred EEEcCCCCeEEEecCCCeEEEEe
Q 019384 249 IAFHPIYGTFATGGCDGFVNVWD 271 (342)
Q Consensus 249 v~~sp~~~~l~sgs~Dg~I~iWd 271 (342)
++.||..+.||+-++||.+++|.
T Consensus 485 l~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 485 LTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccCcccchhhhhcccchhhhcC
Confidence 88899999999999999999994
No 77
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.9e-23 Score=195.06 Aligned_cols=276 Identities=17% Similarity=0.252 Sum_probs=188.6
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~ 93 (342)
.+|.+.|..|+|.|.+.+++|||.|-+|+||+.+..++ .++.+|-+-|..+.|++.-- +++||.|++|++|++.++++
T Consensus 48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ 127 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC 127 (1202)
T ss_pred hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce
Confidence 37899999999999999999999999999999988764 46679999999999986554 46999999999999999985
Q ss_pred -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCccee----------------eee-------e-c-CCCC
Q 019384 94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT----------------LVG-------T-Y-PQPE 147 (342)
Q Consensus 94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~----------------~~~-------~-~-~~~~ 147 (342)
-.+.||.-.|.|..|+|..++++|+|.|.+||+||+..-.+.... .++ . . .|..
T Consensus 128 iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR 207 (1202)
T KOG0292|consen 128 IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR 207 (1202)
T ss_pred EEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc
Confidence 468999999999999999999999999999999997521110000 000 0 0 1112
Q ss_pred cEEEEeccC--CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc
Q 019384 148 RVYSLSLVG--NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA 225 (342)
Q Consensus 148 ~v~~~s~~~--~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~ 225 (342)
.|...++.+ ..|++|+.|+.|++|.+...+.=..-.--.+-.++.|+.|+|....+++.+.|+.+++ ||....+..
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV--wDm~kRt~v 285 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV--WDMTKRTSV 285 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE--Eecccccce
Confidence 233445555 3788999999999999865432111011122345788999999999999999998754 887433222
Q ss_pred ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC--------------------------CCeEEEEeCCCcee--
Q 019384 226 KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC--------------------------DGFVNVWDGNNKKR-- 277 (342)
Q Consensus 226 ~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~--------------------------Dg~I~iWd~~~~~~-- 277 (342)
..+ +... .....++-||..+++|.|-. |..|+-+|..+.+.
T Consensus 286 ~tf--rren---------dRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~ 354 (1202)
T KOG0292|consen 286 QTF--RREN---------DRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTA 354 (1202)
T ss_pred eee--eccC---------CeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccce
Confidence 211 1000 13455666665555544432 33444444433221
Q ss_pred eeccCC---CCcceEEEEECCCCCEEEEEE
Q 019384 278 LYQYSK---YPTSIAALSFSRDGRLLAVAS 304 (342)
Q Consensus 278 ~~~~~~---~~~~V~~v~~spdg~~las~s 304 (342)
+.+++. ...++.+|.|+|-..-+..++
T Consensus 355 v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 355 VASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred eEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 122221 125788999999877666665
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=4.4e-24 Score=186.28 Aligned_cols=234 Identities=17% Similarity=0.249 Sum_probs=177.0
Q ss_pred CCCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEECCCc----ee-------eeeeecCCceEEEEEe--CCCCeEEEecCC
Q 019384 16 NPPSDGISNLRFSNHS-DHLLVSSWDKSVRLYDASAN----VL-------RGEFMHGGPVLDCCFH--DDSSGFSASADH 81 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~----~~-------~~~~~h~~~V~~~~~~--~~~~~~s~s~D~ 81 (342)
-.|.+.|+.++.-|+. ..+||.+..+.|.|||.... +. +.+.+|++.-++++|+ ..+.+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3678899999999965 55677788899999997531 11 2566899988899997 466789999999
Q ss_pred cEEEEEeccCce--------eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384 82 TVRRLVFSHGKE--------DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL 152 (342)
Q Consensus 82 ~i~~w~~~~~~~--------~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~ 152 (342)
++++||+..... ..+.+|+..|..++|++.. .+|++++.|+.+.|||+|+.+........ .+...+.++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~--ah~~~vn~~ 278 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK--AHSAEVNCV 278 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc--ccCCceeEE
Confidence 999999876442 2567999999999999954 67899999999999999963222222222 344556666
Q ss_pred eccC---CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccce
Q 019384 153 SLVG---NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229 (342)
Q Consensus 153 s~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~ 229 (342)
.+++ ..||++++|++|.+||+|+...+. +.
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l-----------------------------------------------h~ 311 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPL-----------------------------------------------HT 311 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCc-----------------------------------------------ee
Confidence 6653 478999999999999999863210 11
Q ss_pred eeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCC--------------ceeeeccCCCCcceEEEEEC
Q 019384 230 FKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNN--------------KKRLYQYSKYPTSIAALSFS 294 (342)
Q Consensus 230 ~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~--------------~~~~~~~~~~~~~V~~v~~s 294 (342)
+..|.. .|.+|.|+|... .|||++.|+.+.|||+.. .+++...-||+..|..++|+
T Consensus 312 ~e~H~d---------ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 312 FEGHED---------EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred ccCCCc---------ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC
Confidence 223332 488899999865 679999999999999752 13456778999999999999
Q ss_pred CCCCEEEEEEecc
Q 019384 295 RDGRLLAVASSYT 307 (342)
Q Consensus 295 pdg~~las~s~~~ 307 (342)
|...+++++.+++
T Consensus 383 p~ePW~I~SvaeD 395 (422)
T KOG0264|consen 383 PNEPWTIASVAED 395 (422)
T ss_pred CCCCeEEEEecCC
Confidence 9999877666555
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-24 Score=176.04 Aligned_cols=225 Identities=17% Similarity=0.321 Sum_probs=159.4
Q ss_pred EEEEEcC--CCCeEE-EE-----eCCCcEEEEECCCceeee---eeecCCceEEEEEe--CCCCeEEEecCCcEEEEEec
Q 019384 23 SNLRFSN--HSDHLL-VS-----SWDKSVRLYDASANVLRG---EFMHGGPVLDCCFH--DDSSGFSASADHTVRRLVFS 89 (342)
Q Consensus 23 ~~l~fs~--~~~~l~-s~-----s~Dgti~vwd~~~~~~~~---~~~h~~~V~~~~~~--~~~~~~s~s~D~~i~~w~~~ 89 (342)
+++.||| ++++.+ ++ ...|++.|-++..+.-+. .+.-++.+.+++|+ ...++++|+.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 6899999 343332 22 245889999986443222 23457889999998 45678899999999999965
Q ss_pred cCc--eeecccCCcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEEEEE
Q 019384 90 HGK--EDILGKHDAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLVVAT 163 (342)
Q Consensus 90 ~~~--~~~~~~h~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~~~s 163 (342)
... ...+..|...|.+++|++. +..++++|+|++||+||...+.. .+.+. .+...|....++ ++.+++++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S--v~Tf~--gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS--VQTFN--GHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc--eEeec--CCccEEEEEecCCCCCCeEEEcc
Confidence 443 3467899999999999984 46788999999999999753221 12222 234455555443 57899999
Q ss_pred cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384 164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV 243 (342)
Q Consensus 164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~ 243 (342)
.|+++++||++..... + .+..|..
T Consensus 168 gd~~l~lwdvr~~gk~-----------------------~-------------------------~i~ah~~-------- 191 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKF-----------------------M-------------------------SIEAHNS-------- 191 (311)
T ss_pred CCceEEEEEecCCCce-----------------------e-------------------------EEEeccc--------
Confidence 9999999998753110 0 0112221
Q ss_pred eeeeEEEEcCC-CCeEEEecCCCeEEEEeCCCce-eeeccCCCCcceEEEEECCCCCEEEEEEeccc
Q 019384 244 YPVNAIAFHPI-YGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSIAALSFSRDGRLLAVASSYTF 308 (342)
Q Consensus 244 ~~v~~v~~sp~-~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~spdg~~las~s~~~~ 308 (342)
.|.++-|+.- ..+|+||+.|+.||+||+++.+ .+..+.+|.-.|..+.|||-..-|++++++|+
T Consensus 192 -Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 192 -EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred -eeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 2667777654 4578999999999999998754 57888999999999999998875555555543
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=181.68 Aligned_cols=277 Identities=19% Similarity=0.211 Sum_probs=217.0
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccC
Q 019384 14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHG 91 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~ 91 (342)
|++-...+|.++...+....++||+.|.++.++|...+.++ ...+|...|+.+.|+++. ..++++.|..|++|.....
T Consensus 214 LH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 214 LHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred eeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 44444568899988888889999999999999999876544 456899999999998654 5679999999999998766
Q ss_pred ce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEec--cCCeEEEEEcCCe
Q 019384 92 KE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSL--VGNRLVVATAGRH 167 (342)
Q Consensus 92 ~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~--~~~~~~~~s~d~~ 167 (342)
.. .....|..+|+.+..+|.|++|+++|.|+++...|++++... ...... ....+.+..+ ++..+.+++.|+.
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l---t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~ 370 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL---TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV 370 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE---EEEeeccccceeEEeeEcCCceEEeccCCCce
Confidence 54 356789999999999999999999999999999999875442 122221 2233444444 5557788999999
Q ss_pred EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384 168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247 (342)
Q Consensus 168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~ 247 (342)
|++||+.+.... .++ ..+...+..++|+.+|.++++++.|+.+ ++||++.....+.+.+... ++|+
T Consensus 371 vkiwdlks~~~~-a~F-pght~~vk~i~FsENGY~Lat~add~~V--~lwDLRKl~n~kt~~l~~~----------~~v~ 436 (506)
T KOG0289|consen 371 VKIWDLKSQTNV-AKF-PGHTGPVKAISFSENGYWLATAADDGSV--KLWDLRKLKNFKTIQLDEK----------KEVN 436 (506)
T ss_pred EEEEEcCCcccc-ccC-CCCCCceeEEEeccCceEEEEEecCCeE--EEEEehhhcccceeecccc----------ccce
Confidence 999999886532 222 2355678999999999999999999875 5699986655444443321 2589
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEeCC--CceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 248 AIAFHPIYGTFATGGCDGFVNVWDGN--NKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~--~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
++.|.+.|.+|+.++.|=+|++++-. +..++..+..|.+..+++.|.-..++++++|.+.
T Consensus 437 s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred eEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchh
Confidence 99999999999999988888888744 3456777888888999999999999999998765
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-23 Score=188.86 Aligned_cols=274 Identities=16% Similarity=0.159 Sum_probs=201.4
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-eeeccc-C
Q 019384 24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-EDILGK-H 99 (342)
Q Consensus 24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-~~~~~~-h 99 (342)
-+.|++ .+.||.| ....|.+|+..++....+.. +...|+++.|++++.. +.|..+|.+.+||....+ ...+.+ |
T Consensus 182 lldWss-~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhccc-CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 366773 3455544 45579999998877544332 3789999999976664 578899999999987765 455666 9
Q ss_pred CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCc
Q 019384 100 DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP 179 (342)
Q Consensus 100 ~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~ 179 (342)
...|-+++|. ...+.+|+.|+.|..+|++....... .+..|..+.+...++.++..+++++.|+.+.|||.......
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 9999999997 57899999999999999986443222 23333333334445556779999999999999999654332
Q ss_pred ccccccccceeeEEEEEeeC-CceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE
Q 019384 180 EQRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF 258 (342)
Q Consensus 180 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l 258 (342)
... ..+...+..++|+|- ...+|+|....+..|+|||.......... +-...|.+|.|++..+.|
T Consensus 337 ~~~--~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v------------dtgsQVcsL~Wsk~~kEi 402 (484)
T KOG0305|consen 337 FTF--TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV------------DTGSQVCSLIWSKKYKEL 402 (484)
T ss_pred EEE--eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc------------ccCCceeeEEEcCCCCEE
Confidence 222 234456778889985 45577877766777899998644322211 111258999999998777
Q ss_pred EE--ecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384 259 AT--GGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE 327 (342)
Q Consensus 259 ~s--gs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
++ |-.+..|.||+..+.+.+..+.+|..+|..+++||||..+++|+++. .+.+|++-+
T Consensus 403 ~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE-----------Tlrfw~~f~ 462 (484)
T KOG0305|consen 403 LSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE-----------TLRFWNLFD 462 (484)
T ss_pred EEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccC-----------cEEeccccC
Confidence 66 44677999999999999999999999999999999999999999876 466666543
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=196.89 Aligned_cols=231 Identities=20% Similarity=0.304 Sum_probs=170.2
Q ss_pred CCCeE---EEEEcC-CCCeEEEEeCCCcEEEEECCC--ce-----eeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEE
Q 019384 19 SDGIS---NLRFSN-HSDHLLVSSWDKSVRLYDASA--NV-----LRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRL 86 (342)
Q Consensus 19 ~~~V~---~l~fs~-~~~~l~s~s~Dgti~vwd~~~--~~-----~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w 86 (342)
..+|. ++..+. .+++|.|||.||.|++|+... ++ +..+..|.+-|+++... .+..+++||.|-+|++|
T Consensus 21 ~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W 100 (735)
T KOG0308|consen 21 RNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVW 100 (735)
T ss_pred cccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEe
Confidence 44555 566665 456799999999999999853 21 33344688889988886 45578999999999999
Q ss_pred EeccCc---eeecccCCcceeEEEE-eCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec----------CCCCcEEEE
Q 019384 87 VFSHGK---EDILGKHDAPVRCIEY-SYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY----------PQPERVYSL 152 (342)
Q Consensus 87 ~~~~~~---~~~~~~h~~~V~~~~~-~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~----------~~~~~v~~~ 152 (342)
+..... ..+++.|++.|.|+++ -++..+++||+.|+.|.+||++++... .+..+ .....++++
T Consensus 101 ~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~---l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 101 NAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT---LVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred ecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh---hhhhccccccccCCCCCccceeee
Confidence 987664 3468899999999999 677788999999999999999864321 11110 011123333
Q ss_pred eccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384 153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC 232 (342)
Q Consensus 153 s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~ 232 (342)
+. .+.+..++.|+.++.+ ++||.+.. .+...+++
T Consensus 178 A~------------------------------------------N~t~t~ivsGgtek~l--r~wDprt~--~kimkLrG 211 (735)
T KOG0308|consen 178 AM------------------------------------------NQTGTIIVSGGTEKDL--RLWDPRTC--KKIMKLRG 211 (735)
T ss_pred ec------------------------------------------CCcceEEEecCcccce--EEeccccc--cceeeeec
Confidence 33 2333334444444433 34555432 23344566
Q ss_pred EEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
|.. .|.++..++||..++++|.||+|++||+...++++++.-|...||++.-+|+=.++-+|++++
T Consensus 212 HTd---------NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 212 HTD---------NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred ccc---------ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCC
Confidence 664 589999999999999999999999999999999999999999999999999999999998864
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=6.2e-24 Score=177.34 Aligned_cols=280 Identities=16% Similarity=0.150 Sum_probs=199.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-------------------ceeeeeeecCCceEEEEEeCCCCe-EE
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-------------------NVLRGEFMHGGPVLDCCFHDDSSG-FS 76 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-------------------~~~~~~~~h~~~V~~~~~~~~~~~-~s 76 (342)
.|...+.+.+||+||.++||||.|..|+|.|+.. ..+++++.|.++|+++.|+|..++ ++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 5678899999999999999999999999999751 125667789999999999987765 69
Q ss_pred EecCCcEEEEEeccCcee---ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe
Q 019384 77 ASADHTVRRLVFSHGKED---ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS 153 (342)
Q Consensus 77 ~s~D~~i~~w~~~~~~~~---~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s 153 (342)
++.|++++++|+.....+ +.-....+|+++.|+|.|++|+.|....++++||+++..+.. ......++...+.++-
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv-sanPd~qht~ai~~V~ 268 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV-SANPDDQHTGAITQVR 268 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee-ecCcccccccceeEEE
Confidence 999999999999765422 223445789999999999999999999999999998643211 1111223344455554
Q ss_pred --ccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceee
Q 019384 154 --LVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK 231 (342)
Q Consensus 154 --~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~ 231 (342)
..++..++++.||.|+|||=-.++........+-+..+.+..|..+++++++.+.|..+ ++|.+.+....+.|.-.
T Consensus 269 Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v--kLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 269 YSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV--KLWEISTGRMLKEYTGA 346 (430)
T ss_pred ecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee--eeeeecCCceEEEEecC
Confidence 45678899999999999997665444333333334456677788999999988888866 56888766555555332
Q ss_pred eEEecCCCCceeeeeeEEEEcCCCCeEEEec-CCCeEEEEeCCCceeeecc-CCCCcceEEEEECCCCCEEEEEEe
Q 019384 232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATGG-CDGFVNVWDGNNKKRLYQY-SKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iWd~~~~~~~~~~-~~~~~~V~~v~~spdg~~las~s~ 305 (342)
+-.+.. .+ -+...|+-.-.++..-. ..+.+.-||.++...+..+ .+|.+.+..+.-||.+.-+.+||.
T Consensus 347 g~tgrq---~~---rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 347 GTTGRQ---KH---RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD 416 (430)
T ss_pred Ccccch---hh---hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence 111100 00 01223444444443322 3457889999987665544 389999999999999999887764
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=197.13 Aligned_cols=242 Identities=24% Similarity=0.333 Sum_probs=182.3
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce-
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE- 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~- 93 (342)
.+|.++|++++|..-+++|++|+.|.|+||||+.++.+... .+|.+.|.++... ...+++||.|.+|++|+++++..
T Consensus 246 ~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~-~~~~~sgs~D~tVkVW~v~n~~~l 324 (537)
T KOG0274|consen 246 VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID-PFLLVSGSRDNTVKVWDVTNGACL 324 (537)
T ss_pred cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-CceEeeccCCceEEEEeccCcceE
Confidence 68999999999998889999999999999999988876654 5699888887764 33457889999999999998885
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEEEcCCeEEEEe
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVATAGRHVNVYD 172 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s~d~~v~iwd 172 (342)
.++.+|..+|+++..+ +..+++|+.|++|++||..+... ...+. .|...|.++.+++ +.+++++.|++|++||
T Consensus 325 ~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c--l~sl~--gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 325 NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC--LKSLS--GHTGRVYSLIVDSENRLLSGSLDTTIKVWD 398 (537)
T ss_pred EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee--eeeec--CCcceEEEEEecCcceEEeeeeccceEeec
Confidence 4566799999999986 78999999999999999874332 22222 2567788888888 8999999999999999
Q ss_pred CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384 173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH 252 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 252 (342)
+++.......... ....+.. ....++.+++++.|+.+ ++||..+....+. +.++ +...|.++++.
T Consensus 399 l~~~~~c~~tl~~-h~~~v~~--l~~~~~~Lvs~~aD~~I--k~WD~~~~~~~~~--~~~~--------~~~~v~~l~~~ 463 (537)
T KOG0274|consen 399 LRTKRKCIHTLQG-HTSLVSS--LLLRDNFLVSSSADGTI--KLWDAEEGECLRT--LEGR--------HVGGVSALALG 463 (537)
T ss_pred CCchhhhhhhhcC-Ccccccc--cccccceeEeccccccE--EEeecccCceeee--eccC--------CcccEEEeecC
Confidence 9987211111111 1111122 23456778888999966 5599865543322 2221 11247777765
Q ss_pred CCCCeEEEecCCCeEEEEeCCCceeeecc
Q 019384 253 PIYGTFATGGCDGFVNVWDGNNKKRLYQY 281 (342)
Q Consensus 253 p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 281 (342)
...+++++.||++++||++++++.+.+
T Consensus 464 --~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 464 --KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred --cceEEEEecCCeeEEEecccCchhhhh
Confidence 467899999999999999998887655
No 85
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=1.4e-23 Score=179.32 Aligned_cols=240 Identities=18% Similarity=0.255 Sum_probs=176.8
Q ss_pred CCCCCCCeEEEEEcCCCC---eEEEEeCCCcEEEEECCCcee-----eeeeecCCceEEEEEeCCC-CeEEEecCCcEEE
Q 019384 15 GNPPSDGISNLRFSNHSD---HLLVSSWDKSVRLYDASANVL-----RGEFMHGGPVLDCCFHDDS-SGFSASADHTVRR 85 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~~~---~l~s~s~Dgti~vwd~~~~~~-----~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~ 85 (342)
..+|++.|.+++|-.-.. .++++|.|.++++|....+.. ..-.+|+.+|.++...+++ .+++||.|.++.+
T Consensus 140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lki 219 (423)
T KOG0313|consen 140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKI 219 (423)
T ss_pred EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeee
Confidence 368899999888765433 599999999999999876531 1123899999999987555 5579999999999
Q ss_pred EEeccCc--------------------------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceee
Q 019384 86 LVFSHGK--------------------------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTL 139 (342)
Q Consensus 86 w~~~~~~--------------------------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~ 139 (342)
|+..... ..++.+|+.+|.++.|++ ...++|+|+|.+|+.||+.++.... .
T Consensus 220 Ws~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~--~ 296 (423)
T KOG0313|consen 220 WSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS--T 296 (423)
T ss_pred cccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee--e
Confidence 9932211 014679999999999997 6789999999999999998754321 1
Q ss_pred eeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCcc-cccccccceeeEEEEEeeCCce-EEEEccCCeEEEE
Q 019384 140 VGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPE-QRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAME 215 (342)
Q Consensus 140 ~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~ 215 (342)
+. ......+++.. .+.+++++.|..+++||-|++.... ......++.-+..+.++|...+ +++++.|++++
T Consensus 297 ~~---~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k-- 371 (423)
T KOG0313|consen 297 LT---TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK-- 371 (423)
T ss_pred ee---cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE--
Confidence 11 12234455544 4688999999999999999874322 1111233345678899997654 67888999875
Q ss_pred EeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 216 FFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 216 ~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
+||.+... ...|.+.+|.. .|.++.|+. +..+++|+.|.+|+|+...
T Consensus 372 lWDvRS~k-~plydI~~h~D---------Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 372 LWDVRSTK-APLYDIAGHND---------KVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEeccCC-CcceeeccCCc---------eEEEEeccC-CceEEeccCcceEEEeccc
Confidence 59998653 34577777754 488899975 6789999999999999654
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-23 Score=195.11 Aligned_cols=235 Identities=18% Similarity=0.313 Sum_probs=176.9
Q ss_pred ecCCceEEEEEeCCCC-eEEEecCCcEEEEEecc--------------------------------Cce-----------
Q 019384 58 MHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSH--------------------------------GKE----------- 93 (342)
Q Consensus 58 ~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~--------------------------------~~~----------- 93 (342)
.|++.|+++.|+++++ +++||.|+.|++|-+.. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6999999999997766 56999999999998654 000
Q ss_pred ------------------eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc
Q 019384 94 ------------------DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV 155 (342)
Q Consensus 94 ------------------~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~ 155 (342)
..+.||.+.|..|.|+. .++|+|+|.|+|+|||++.... ++..+.|...|+++.++
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~-----CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKE-----CLKVFSHNDFVTCVAFN 418 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcc-----eeeEEecCCeeEEEEec
Confidence 01347999999999996 5699999999999999986433 35555566777777765
Q ss_pred ---CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384 156 ---GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC 232 (342)
Q Consensus 156 ---~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~ 232 (342)
.++|++|+-|+.||||++...+.. .. ..+..-++.+.+.|+|++.++|+.+|.+ ++|++...+....+.+..
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv-~W--~Dl~~lITAvcy~PdGk~avIGt~~G~C--~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVV-DW--NDLRDLITAVCYSPDGKGAVIGTFNGYC--RFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeE-ee--hhhhhhheeEEeccCCceEEEEEeccEE--EEEEccCCeEEEeeeEee
Confidence 458999999999999999764322 11 1334568899999999999999999976 468876544333343433
Q ss_pred EEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCceeeeccCCCCc--ceEEEEECCCCCEEEEEEec
Q 019384 233 HRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRLYQYSKYPT--SIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 233 h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~--~V~~v~~spdg~~las~s~~ 306 (342)
|++. ...+. .|+.+.|.|... .|+..+.|..|||+|.++..++..|+|+.+ .=....|+.||++|+++|.+
T Consensus 494 ~~~K--k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 494 HNKK--KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred ccCc--cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence 3321 11222 599999987543 577888999999999988888888887654 33688999999999999953
No 87
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=185.28 Aligned_cols=270 Identities=17% Similarity=0.225 Sum_probs=205.1
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeee---eecCCceEEEEEeCC-CCeEEEecCCcEEEEEec
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGE---FMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFS 89 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~---~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~ 89 (342)
.|..=|-++.+|...+++.||+.. -|||||+.... .... ..-.+-|.+|...++ .++++|+.-.++.+||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 456677789999999999998765 59999996532 1221 123456788888755 467899998899999998
Q ss_pred cCceee---cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384 90 HGKEDI---LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR 166 (342)
Q Consensus 90 ~~~~~~---~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~ 166 (342)
....++ +..-....+.++.+||.+..++|..||.|+|||+++.... + .+..+.....++.++.++..|-+++-|+
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V-r-qfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV-R-QFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee-e-cccCCCCCceeEEecCCCceeecCCCcc
Confidence 766432 2222345678999999999999999999999999864331 1 2333444445566777788999999999
Q ss_pred eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384 167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV 246 (342)
Q Consensus 167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v 246 (342)
+||.||+|.+.++. .+.+..++.++.+.|++..+++|..++.+.+ .... ...+|.+..|.. .|
T Consensus 574 tvRcWDlregrqlq---qhdF~SQIfSLg~cP~~dWlavGMens~vev--lh~s---kp~kyqlhlheS---------cV 636 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQ---QHDFSSQIFSLGYCPTGDWLAVGMENSNVEV--LHTS---KPEKYQLHLHES---------CV 636 (705)
T ss_pred ceeehhhhhhhhhh---hhhhhhhheecccCCCccceeeecccCcEEE--EecC---Cccceeeccccc---------EE
Confidence 99999999875543 2345567888889999999999999887754 3332 334455555544 58
Q ss_pred eEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.++.|.+-|+++++.+.|.-+..|..--+..+.+.+ ..+.|.++.+|.|.+|+++||.+.
T Consensus 637 LSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 637 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred EEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCc
Confidence 999999999999999999999999987777777665 457899999999999999999775
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.7e-22 Score=167.91 Aligned_cols=251 Identities=16% Similarity=0.215 Sum_probs=180.8
Q ss_pred eEEEEeCCCcEEEEECCCce-------------eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-eeeccc
Q 019384 33 HLLVSSWDKSVRLYDASANV-------------LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILGK 98 (342)
Q Consensus 33 ~l~s~s~Dgti~vwd~~~~~-------------~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~ 98 (342)
.++.|++...|.=+++.-.. +.....|.++|++++.+ ...+++||.|.+|++||+.... ...+..
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs-~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS-GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec-ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 36778888888777763211 12233699999999985 3356799999999999998876 356778
Q ss_pred CCcceeEEEEeCCCC--EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCC
Q 019384 99 HDAPVRCIEYSYAAG--QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 99 h~~~V~~~~~~~~~~--~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~ 174 (342)
|.+.|+++.|.+... .|++|+.||.|.+|+...= .....+..+.+ .|..++. ++...++.+.|+.+++||+-
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H~~--~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAHKG--QVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeeccccc--ccceeEecCCCceEEEEcCCceeeeehhh
Confidence 999999999998764 7999999999999997531 11122333333 3555554 55677788999999999998
Q ss_pred CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384 175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI 254 (342)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~ 254 (342)
+++.... ..++.....|.|+|.|..+++...+ .|-+|.+...+..+....+ ..+.++.|- +
T Consensus 158 ~Gr~a~v---~~L~~~at~v~w~~~Gd~F~v~~~~---~i~i~q~d~A~v~~~i~~~------------~r~l~~~~l-~ 218 (362)
T KOG0294|consen 158 RGRVAFV---LNLKNKATLVSWSPQGDHFVVSGRN---KIDIYQLDNASVFREIENP------------KRILCATFL-D 218 (362)
T ss_pred cCcccee---eccCCcceeeEEcCCCCEEEEEecc---EEEEEecccHhHhhhhhcc------------ccceeeeec-C
Confidence 7754321 1233344568999999988877654 2344665443322221111 024455553 4
Q ss_pred CCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE--CCCCCEEEEEEecc
Q 019384 255 YGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF--SRDGRLLAVASSYT 307 (342)
Q Consensus 255 ~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~--spdg~~las~s~~~ 307 (342)
+..|++|+.|+.|++||.++..+...+..|..+|.++.+ .|++.||+++|+++
T Consensus 219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 219 GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence 778999999999999999998889999999999999995 78999999999964
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=4.1e-24 Score=184.37 Aligned_cols=238 Identities=21% Similarity=0.270 Sum_probs=173.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCC-CCeEEEecCCcEEEEEeccCcee
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFSHGKED 94 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~~~~~~ 94 (342)
+..+.|+++.|.+++.++++++.|+++++|++....++. +.+|++.|+++.|... ..+++++.|.++++||+......
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 345679999999999999999999999999998876554 4589999999999743 34889999999999999886643
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~ 174 (342)
.-.-....+..|..+ ...++||-.|++||.||.++.+......+ .+..+.+.+++++..+++++-|.++.+.|++
T Consensus 297 kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~---gg~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 297 KTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL---GGRVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred ccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeec---CcceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 222223344444443 45689999999999999987655221111 1223344556677789999999999999999
Q ss_pred CCCCccccccccc--ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384 175 NMSQPEQRRESSL--KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH 252 (342)
Q Consensus 175 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 252 (342)
+............ ....+.+.|+|++.+++.|+.|+.+. +|+....+..+...... ....|++++|+
T Consensus 372 t~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~--iW~v~tgKlE~~l~~s~---------s~~aI~s~~W~ 440 (459)
T KOG0288|consen 372 TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY--IWSVFTGKLEKVLSLST---------SNAAITSLSWN 440 (459)
T ss_pred cccEEEEeeccccccccccceeEECCCCceeeeccCCCcEE--EEEccCceEEEEeccCC---------CCcceEEEEEc
Confidence 8643222111111 12245678999999999999999875 58885543322221111 01159999999
Q ss_pred CCCCeEEEecCCCeEEEE
Q 019384 253 PIYGTFATGGCDGFVNVW 270 (342)
Q Consensus 253 p~~~~l~sgs~Dg~I~iW 270 (342)
|.|..|++++.++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 999999999999999999
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.1e-22 Score=168.54 Aligned_cols=254 Identities=19% Similarity=0.243 Sum_probs=180.7
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCC---CeEEEecCCcEEEEEeccC
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDS---SGFSASADHTVRRLVFSHG 91 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~---~~~s~s~D~~i~~w~~~~~ 91 (342)
..|...|++|+-+ +.++||||.|-+|+|||..... +.....|.+.|+++.|.++. .+++|+.||.|.+|+...-
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence 4678999999865 6899999999999999998764 33456799999999998554 6899999999999997665
Q ss_pred c-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384 92 K-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV 170 (342)
Q Consensus 92 ~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i 170 (342)
. ...+..|..+|+.++.+|.+++-++.+.|+++++||+-.+.... .-........+.++..|++++....+ .|-+
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~---v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i 193 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF---VLNLKNKATLVSWSPQGDHFVVSGRN-KIDI 193 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce---eeccCCcceeeEEcCCCCEEEEEecc-EEEE
Confidence 4 34678999999999999999988999999999999986544321 11222334456777778888877765 5888
Q ss_pred EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250 (342)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 250 (342)
|.+.+...... ...+..+.|+-|. ++..+++|..++.+ .+||... ......+.+|.. .|-.+.
T Consensus 194 ~q~d~A~v~~~---i~~~~r~l~~~~l-~~~~L~vG~d~~~i--~~~D~ds--~~~~~~~~AH~~---------RVK~i~ 256 (362)
T KOG0294|consen 194 YQLDNASVFRE---IENPKRILCATFL-DGSELLVGGDNEWI--SLKDTDS--DTPLTEFLAHEN---------RVKDIA 256 (362)
T ss_pred EecccHhHhhh---hhccccceeeeec-CCceEEEecCCceE--EEeccCC--Cccceeeecchh---------heeeeE
Confidence 98876432111 1111234444443 44567788777755 5688754 233345666765 365665
Q ss_pred E--cCCCCeEEEecCCCeEEEEeCCCc-----eeeeccCCCCcceEEEEE
Q 019384 251 F--HPIYGTFATGGCDGFVNVWDGNNK-----KRLYQYSKYPTSIAALSF 293 (342)
Q Consensus 251 ~--sp~~~~l~sgs~Dg~I~iWd~~~~-----~~~~~~~~~~~~V~~v~~ 293 (342)
+ .|++.+|+|+|.||.|+|||++.. +.+..+.. ..+++|+..
T Consensus 257 ~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 257 SYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred EEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 3 477889999999999999998743 23333221 445666655
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.6e-23 Score=173.29 Aligned_cols=273 Identities=16% Similarity=0.161 Sum_probs=194.0
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCCe-EEEecCCcEEEEE------
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSSG-FSASADHTVRRLV------ 87 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~------ 87 (342)
.+|.++|+.++-......+.|+|.|.|.+||.+.+++++.+ .+|.|.|+++.|++.+.+ +++|.|++..+|-
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 68999999999988888999999999999999999876654 589999999999976665 6999999998886
Q ss_pred eccC--------c-e----------------------e----ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384 88 FSHG--------K-E----------------------D----ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132 (342)
Q Consensus 88 ~~~~--------~-~----------------------~----~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~ 132 (342)
.... + + + .+.+|...|.+++|-..+++++|+|||.+-.+||++++
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg 304 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG 304 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence 2110 0 0 0 24579999999999999999999999999999999865
Q ss_pred CCcceeeeeecCCCCcEEEEeccCC--eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCC
Q 019384 133 SGQERTLVGTYPQPERVYSLSLVGN--RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG 210 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~v~~~s~~~~--~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 210 (342)
.. ...+..+.++ ..-++..++ .+++.+.|-+.++||.+..-..... -+.+...++++.|.-+ ..+++++.|.
T Consensus 305 e~--v~~LtGHd~E--LtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~V-FQGHtdtVTS~vF~~d-d~vVSgSDDr 378 (481)
T KOG0300|consen 305 EV--VNILTGHDSE--LTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAV-FQGHTDTVTSVVFNTD-DRVVSGSDDR 378 (481)
T ss_pred ce--eccccCcchh--ccccccCCcceEEEEeccCceeEeccchhhcceeee-ecccccceeEEEEecC-CceeecCCCc
Confidence 43 2334433332 333444443 5778899999999999853211111 1223334555555544 4588888888
Q ss_pred eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceee----eccCCCCc
Q 019384 211 RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRL----YQYSKYPT 286 (342)
Q Consensus 211 ~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~----~~~~~~~~ 286 (342)
++ ++||++.-..+. -.++. ..+++.++.+..++.++.--.++.|++||+...... ..-++|..
T Consensus 379 Tv--KvWdLrNMRspl-ATIRt----------dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR 445 (481)
T KOG0300|consen 379 TV--KVWDLRNMRSPL-ATIRT----------DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR 445 (481)
T ss_pred eE--EEeeeccccCcc-eeeec----------CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce
Confidence 76 569986432211 11111 126888999988889999999999999998753321 13458999
Q ss_pred ceEEEEECCCCC--EEEEEEecc
Q 019384 287 SIAALSFSRDGR--LLAVASSYT 307 (342)
Q Consensus 287 ~V~~v~~spdg~--~las~s~~~ 307 (342)
.|.|++|+-+.- -|.+++.+.
T Consensus 446 MV~c~AW~eehp~cnLftcGFDR 468 (481)
T KOG0300|consen 446 MVTCCAWLEEHPACNLFTCGFDR 468 (481)
T ss_pred eeeeeeccccCcccccccccccc
Confidence 999999976643 344554443
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=157.19 Aligned_cols=273 Identities=15% Similarity=0.172 Sum_probs=195.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC------c--------e--eeeeeecCCceEEEEEeCCCCeE-EEecC
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA------N--------V--LRGEFMHGGPVLDCCFHDDSSGF-SASAD 80 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~------~--------~--~~~~~~h~~~V~~~~~~~~~~~~-s~s~D 80 (342)
.+..|.+|+|.|.|.+.|.||..+|.||-.... + . +....-|.+.|+|.+|++.++++ +++.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 357899999999999999999999999876321 0 0 22233589999999999888875 89999
Q ss_pred CcEEEEEeccCce------eecccCCcceeEEEEeCC----CCEEEEe-eCCCcEEEEcCCCCCCcceeeeeecCCCCcE
Q 019384 81 HTVRRLVFSHGKE------DILGKHDAPVRCIEYSYA----AGQVITG-SWDKSLKCWDPRGASGQERTLVGTYPQPERV 149 (342)
Q Consensus 81 ~~i~~w~~~~~~~------~~~~~h~~~V~~~~~~~~----~~~l~sg-s~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v 149 (342)
.+|++.-+..... ..+.-|.+.|+.++|-.+ +..|+++ ..|..|.+-|...+.+ ...+. .++..+
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~--~~a~s--ghtghi 186 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG--FHALS--GHTGHI 186 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc--ceeec--CCcccE
Confidence 9999987755432 245679999999999753 2345553 3445566656654433 22222 244445
Q ss_pred EE-EeccCCeEEEEEcCCeEEEEeCCCCCCccccc----cccc-ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh
Q 019384 150 YS-LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR----ESSL-KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS 223 (342)
Q Consensus 150 ~~-~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~ 223 (342)
.+ .++++-.++++++|++||+||+|-........ ...+ ...+..|++.|.|+.++++-.|.... +||++...
T Consensus 187 lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~--lydirg~r 264 (350)
T KOG0641|consen 187 LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCM--LYDIRGGR 264 (350)
T ss_pred EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceE--EEEeeCCc
Confidence 55 46788899999999999999998754322111 1111 12367788999999999998888764 59987654
Q ss_pred hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc----eeeeccCCCCcceEEEEECCCCCE
Q 019384 224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK----KRLYQYSKYPTSIAALSFSRDGRL 299 (342)
Q Consensus 224 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~----~~~~~~~~~~~~V~~v~~spdg~~ 299 (342)
..+.+ .-|. ..|.||.|+|.-.++.+|+.|..|++-|++.. -.+.....|...+..+.|.|..-.
T Consensus 265 ~iq~f--~phs---------adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 265 MIQRF--HPHS---------ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred eeeee--CCCc---------cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccce
Confidence 43332 1222 25999999999999999999999999998731 123344578899999999999888
Q ss_pred EEEEEecc
Q 019384 300 LAVASSYT 307 (342)
Q Consensus 300 las~s~~~ 307 (342)
+++.|.+.
T Consensus 334 fisssadk 341 (350)
T KOG0641|consen 334 FISSSADK 341 (350)
T ss_pred eeeccCcc
Confidence 88877765
No 93
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=1e-21 Score=185.05 Aligned_cols=214 Identities=17% Similarity=0.205 Sum_probs=147.5
Q ss_pred EeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCC--CCeEEEecCCcEEEEEeccCce---------eecccCCccee
Q 019384 37 SSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDD--SSGFSASADHTVRRLVFSHGKE---------DILGKHDAPVR 104 (342)
Q Consensus 37 ~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~--~~~~s~s~D~~i~~w~~~~~~~---------~~~~~h~~~V~ 104 (342)
|+.++.|+||+..... +....+|.+.|.+++|+|. ..+++|+.|++|++|++.+... ..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 6678899999875543 3445689999999999964 4567999999999999976421 24678999999
Q ss_pred EEEEeCCCCE-EEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE--eccCCeEEEEEcCCeEEEEeCCCCCCccc
Q 019384 105 CIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL--SLVGNRLVVATAGRHVNVYDLRNMSQPEQ 181 (342)
Q Consensus 105 ~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s~d~~v~iwd~~~~~~~~~ 181 (342)
+++|+|++.. |+|++.|++|++||++++.. ...+. +...+.++ +.++..+++++.|+.|++||++++...
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i~---~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-- 202 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQIN---MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-- 202 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEEe---cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE--
Confidence 9999998865 57999999999999986432 11121 22334444 456778888889999999999875211
Q ss_pred ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe
Q 019384 182 RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG 261 (342)
Q Consensus 182 ~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg 261 (342)
..+. +|... -....+....|++++.+|+++
T Consensus 203 ----------~tl~------------------------------------gH~g~----~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 203 ----------SSFH------------------------------------IHDGG----KNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred ----------EEEe------------------------------------cccCC----ceeEEEEeeeEcCCCCEEEEE
Confidence 0000 00000 000023445678899999987
Q ss_pred cCCC----eEEEEeCCC-ceeeec--cCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 262 GCDG----FVNVWDGNN-KKRLYQ--YSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 262 s~Dg----~I~iWd~~~-~~~~~~--~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
+.|+ +|+|||+++ .+.+.. +..+.+.+...-..++|.++++|+.+.
T Consensus 233 G~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred EcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 7764 799999985 444443 333444555555577799999998765
No 94
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.6e-23 Score=165.96 Aligned_cols=254 Identities=17% Similarity=0.226 Sum_probs=176.9
Q ss_pred ecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce----eecccCCcceeEEEEeC--CCCEEEEeeCCCcEEEEcCC
Q 019384 58 MHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE----DILGKHDAPVRCIEYSY--AAGQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 58 ~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~----~~~~~h~~~V~~~~~~~--~~~~l~sgs~D~~I~iWd~~ 130 (342)
.|.+.|.++... -+.+++|||.|++|+++..+.... ..|.+|.++|+.++|-. -|.+|+|+|+||.|.||.-+
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 477777766654 566788999999999998876552 35789999999999964 67899999999999999865
Q ss_pred CCCCcceeeeeecCCCCcEEEEeccCC----eEEEEEcCCeEEEEeCCCCC-CcccccccccceeeEEEEEeeC---C--
Q 019384 131 GASGQERTLVGTYPQPERVYSLSLVGN----RLVVATAGRHVNVYDLRNMS-QPEQRRESSLKYQTRCVRCYPN---G-- 200 (342)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~v~~~s~~~~----~~~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~---~-- 200 (342)
++. -........+...+.++++-++ .|+++++||.|.+.+.+... -...+....+..-++++++.|. |
T Consensus 89 ~g~--w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 89 NGR--WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred CCc--hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 431 1111111123445556665443 68889999999999987641 1112222234445677888775 3
Q ss_pred ---------ceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC----CeEEEecCCCeE
Q 019384 201 ---------TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY----GTFATGGCDGFV 267 (342)
Q Consensus 201 ---------~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~----~~l~sgs~Dg~I 267 (342)
+.+++++.|+.++| |......-.....|.+|.. -|+.+|+.|.- .++|+||.||+|
T Consensus 167 ~~~~~~~~~krlvSgGcDn~Vki--W~~~~~~w~~e~~l~~H~d---------wVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKI--WKFDSDSWKLERTLEGHKD---------WVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred cccCcccccceeeccCCccceee--eecCCcchhhhhhhhhcch---------hhhhhhhccccCCCceeeEEecCCCcE
Confidence 34889999988766 6654433333334666765 48899999974 468999999999
Q ss_pred EEEeCCCc-e--eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc-CCccccCCC
Q 019384 268 NVWDGNNK-K--RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN-EIEVKPKPK 335 (342)
Q Consensus 268 ~iWd~~~~-~--~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 335 (342)
.||..+.. + ....++..+..++.++||+.|.+||+++.+. .+.+|+=+ ++.+++-++
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN-----------kvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN-----------KVTLWKENVDGKWEEVGE 296 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc-----------EEEEEEeCCCCcEEEccc
Confidence 99976521 1 1233455678899999999999999988766 58888554 566666554
No 95
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-21 Score=184.20 Aligned_cols=275 Identities=17% Similarity=0.265 Sum_probs=201.0
Q ss_pred CCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-e-eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEE
Q 019384 10 SGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-V-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLV 87 (342)
Q Consensus 10 ~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~-~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~ 87 (342)
+-..|+..|..+-+.|+|.|+|..|.+++.||.||+|+.... . ....-.++..|.+++.. ...+++++.+++|.++-
T Consensus 4 ~r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~-s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 4 TRLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY-SNHFLTGSEQNTVLRYK 82 (933)
T ss_pred ccccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec-ccceEEeeccceEEEee
Confidence 345677899999999999999999999999999999997543 2 22222277778777764 33788999999999999
Q ss_pred eccCcee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEc
Q 019384 88 FSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATA 164 (342)
Q Consensus 88 ~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~ 164 (342)
+..+... .+...+-++++++|+-+|+.++.||.|-.|++-+......+ ..+..+ ...+.++++ .++.+++.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--~~lrgh--~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--KVLRGH--DAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh--eeeccc--CCceeeeeEcCCCCEEEEEec
Confidence 9888754 56667789999999999999999999999999987644332 233333 344555555 4568999999
Q ss_pred CCeEEEEeCCCCCCccccccc-----cc-ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384 165 GRHVNVYDLRNMSQPEQRRES-----SL-KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA 238 (342)
Q Consensus 165 d~~v~iwd~~~~~~~~~~~~~-----~~-~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~ 238 (342)
||.|++||+.++......... .. ......++|+|++..+++...++.|.+ |+..... ..+.++..
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv--y~r~~we--~~f~Lr~~----- 229 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV--YSRKGWE--LQFKLRDK----- 229 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE--EccCCce--eheeeccc-----
Confidence 999999999876432211110 01 112345789999999999999998765 6653322 22222221
Q ss_pred CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384 239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304 (342)
Q Consensus 239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s 304 (342)
.+...++.+.|+|+|++||++..||.|-|||+++... ......|.+++|-|++.-|-.-.
T Consensus 230 --~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 230 --LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred --ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEe
Confidence 1111388899999999999999999999999997322 23346799999999988665443
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=5.1e-22 Score=181.31 Aligned_cols=261 Identities=16% Similarity=0.254 Sum_probs=186.8
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee---eeecCCceEE-EEEe--CCCCeEEEecCCcEEEEEec
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---EFMHGGPVLD-CCFH--DDSSGFSASADHTVRRLVFS 89 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~---~~~h~~~V~~-~~~~--~~~~~~s~s~D~~i~~w~~~ 89 (342)
++|...|..+++.+. ..++++|.||++++|+-....... ..+|.+-|.. ++|. +.+++++|+.|..+.+|...
T Consensus 11 ~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred ccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 688999999987644 478899999999999986554332 4467787766 8885 45568999999999999988
Q ss_pred cCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEEEEEcCCe
Q 019384 90 HGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGRH 167 (342)
Q Consensus 90 ~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~ 167 (342)
+.. ..++.+|...|.|++...++. ++|||||.|.++|-..... ..+.. |+..|.++.. ..+.+++|++|++
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~----~~l~g--H~asVWAv~~l~e~~~vTgsaDKt 162 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV----YSLQG--HTASVWAVASLPENTYVTGSADKT 162 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh----cccCC--cchheeeeeecCCCcEEeccCcce
Confidence 776 457899999999998776665 9999999999999764211 11222 3344544443 3458999999999
Q ss_pred EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384 168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247 (342)
Q Consensus 168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~ 247 (342)
|++|.-.+. . ..+ ..+..-+..+++.+++ .+++++.|+.+ ++|+.... ..+.+.+|... |.
T Consensus 163 IklWk~~~~--l-~tf-~gHtD~VRgL~vl~~~-~flScsNDg~I--r~w~~~ge---~l~~~~ghtn~---------vY 223 (745)
T KOG0301|consen 163 IKLWKGGTL--L-KTF-SGHTDCVRGLAVLDDS-HFLSCSNDGSI--RLWDLDGE---VLLEMHGHTNF---------VY 223 (745)
T ss_pred eeeccCCch--h-hhh-ccchhheeeeEEecCC-CeEeecCCceE--EEEeccCc---eeeeeeccceE---------EE
Confidence 999986432 1 111 1122234455566654 57888888876 56888432 23334455542 67
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCc-ceEEEEECCCCCEEEEEEecc
Q 019384 248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT-SIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~-~V~~v~~spdg~~las~s~~~ 307 (342)
++...++++.++|+++|++++||+.. .+.+.++ |+. .||++.+-++|.++ +|++++
T Consensus 224 sis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~-lPttsiWsa~~L~NgDIv-vg~SDG 280 (745)
T KOG0301|consen 224 SISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT-LPTTSIWSAKVLLNGDIV-VGGSDG 280 (745)
T ss_pred EEEecCCCCeEEEecCCceEEEeecC--ceEEEEe-cCccceEEEEEeeCCCEE-EeccCc
Confidence 77777778899999999999999866 5665554 444 89999999999965 466654
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=7.4e-23 Score=181.09 Aligned_cols=249 Identities=21% Similarity=0.265 Sum_probs=179.1
Q ss_pred CccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-------------eeeeecCCceEEEEEeCCC--CeE
Q 019384 11 GRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-------------RGEFMHGGPVLDCCFHDDS--SGF 75 (342)
Q Consensus 11 ~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-------------~~~~~h~~~V~~~~~~~~~--~~~ 75 (342)
+|.|-.-....|.+++||+.|+.|+..+...-++|+|-.+..+ .-+.+|-..++|.+|+|.. .++
T Consensus 206 fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl 285 (641)
T KOG0772|consen 206 FRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL 285 (641)
T ss_pred hhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE
Confidence 4445445567899999999999999999999999999765332 2234688889999998654 578
Q ss_pred EEecCCcEEEEEeccCce--eec-----ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeee-eecCC--
Q 019384 76 SASADHTVRRLVFSHGKE--DIL-----GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV-GTYPQ-- 145 (342)
Q Consensus 76 s~s~D~~i~~w~~~~~~~--~~~-----~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~-~~~~~-- 145 (342)
+++.|+++|+|++...+. .++ .+-.-++++|+|++|++.||+|..||.|.+||.++........+ ..|..
T Consensus 286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~ 365 (641)
T KOG0772|consen 286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ 365 (641)
T ss_pred EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC
Confidence 999999999999876552 122 23445689999999999999999999999999865333222222 23332
Q ss_pred CCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccc-cccceeeEEEEEeeCCceEEEEcc----CCeEEEEEeech
Q 019384 146 PERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRE-SSLKYQTRCVRCYPNGTGYALSSV----EGRVAMEFFDLS 220 (342)
Q Consensus 146 ~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~s~----~~~~~i~~~d~~ 220 (342)
..+.+.|+.+++.|++-+.|+++++||+++.+.+..... ....+..+.+.|+|+.+.+++|+. ...-.+.|||..
T Consensus 366 ~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 366 DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred ceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 234556777889999999999999999999876543222 223344566779999999888863 222356788864
Q ss_pred hhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEE
Q 019384 221 EASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW 270 (342)
Q Consensus 221 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iW 270 (342)
+-..+.+..+. ...|..+.|||.-+.|..|+.||+++||
T Consensus 446 t~d~v~ki~i~-----------~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 446 TLDTVYKIDIS-----------TASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ceeeEEEecCC-----------CceEEEEeecchhhheeeecCCCceEEE
Confidence 33222221111 1147788999998888899999999988
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.1e-21 Score=179.76 Aligned_cols=279 Identities=17% Similarity=0.172 Sum_probs=204.1
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEECCC----ceeeeeeecCCceEEEEEeC------------CCCeEEEecCCcEEEE
Q 019384 23 SNLRFSNHSDHLLVSSWDKSVRLYDASA----NVLRGEFMHGGPVLDCCFHD------------DSSGFSASADHTVRRL 86 (342)
Q Consensus 23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~----~~~~~~~~h~~~V~~~~~~~------------~~~~~s~s~D~~i~~w 86 (342)
-++.|++..+.|...=.|..+.|||+.. ++....+-|+..|+++.-.| .+-+++|+.|++||+|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 3678999999998888999999999975 45666677998888876533 2346799999999999
Q ss_pred EeccCc---e--e-e---------c-----------------------ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEc
Q 019384 87 VFSHGK---E--D-I---------L-----------------------GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128 (342)
Q Consensus 87 ~~~~~~---~--~-~---------~-----------------------~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd 128 (342)
+++... . + . + .+....+++++.+|+++.|++|..-|.|+++|
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 987621 0 0 0 0 01234599999999999999999999999999
Q ss_pred CCCCCCcceeeeeecCCCCcEEEEeccC-----CeEEEEEcCCeEEEEeCCCCCCccccccc------------------
Q 019384 129 PRGASGQERTLVGTYPQPERVYSLSLVG-----NRLVVATAGRHVNVYDLRNMSQPEQRRES------------------ 185 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~v~~~s~~~-----~~~~~~s~d~~v~iwd~~~~~~~~~~~~~------------------ 185 (342)
+..... ...+.. |...+.++.++- +.+++++.|+.|++||+...-.+.+....
T Consensus 488 Lq~l~~--~~~~eA--HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 488 LQELEY--TCFMEA--HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred ehhhhh--hhheec--ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE
Confidence 875332 122333 345566666542 36889999999999997532111000000
Q ss_pred -----------------------------c-cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384 186 -----------------------------S-LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK 235 (342)
Q Consensus 186 -----------------------------~-~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~ 235 (342)
. -+.....+.+.|..+.++++..|..++ +||+...++.+.+ ++.+
T Consensus 564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir--if~i~sgKq~k~F--Kgs~- 638 (1080)
T KOG1408|consen 564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR--IFDIESGKQVKSF--KGSR- 638 (1080)
T ss_pred EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE--EEeccccceeeee--cccc-
Confidence 0 001123456677777788888887664 5888766555443 2211
Q ss_pred cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCC
Q 019384 236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPH 315 (342)
Q Consensus 236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~ 315 (342)
++.+..-.+...|.|-+||+...|+++.++|..+++++.++.||..-|+.|.|++|-++|++.++++
T Consensus 639 -----~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg-------- 705 (1080)
T KOG1408|consen 639 -----DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG-------- 705 (1080)
T ss_pred -----cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCc--------
Confidence 1122355688899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEcc
Q 019384 316 EPDAIFVRSVN 326 (342)
Q Consensus 316 ~~~~~~~~~~~ 326 (342)
|||||++.
T Consensus 706 ---CIFvW~lp 713 (1080)
T KOG1408|consen 706 ---CIFVWKLP 713 (1080)
T ss_pred ---eEEEEECc
Confidence 99999985
No 99
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2e-22 Score=182.03 Aligned_cols=233 Identities=16% Similarity=0.206 Sum_probs=186.4
Q ss_pred eecCCceEEEEEeCCCCeE-EEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC
Q 019384 57 FMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG 134 (342)
Q Consensus 57 ~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~ 134 (342)
..++..|.++.|+|-.-++ ++-..|.+.+|+.++.. .+.+....-+|+++.|...-+.+++||.|..||+++..+..+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence 3488899999999876664 66689999999998876 445666778899999998888999999999999999876544
Q ss_pred cceeeeeecCCCCcEEEEeccCC--eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC-CceEEEEccCCe
Q 019384 135 QERTLVGTYPQPERVYSLSLVGN--RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN-GTGYALSSVEGR 211 (342)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~s~~~~--~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~s~~~~ 211 (342)
. ..+. .|...+.++...|. .++++|.|-+|++||..+.=...+.++ .+..-+.++++.|. .+.+++++.|.+
T Consensus 90 V--~~Fe--AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 90 V--KTFE--AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred e--EEee--ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeecccc
Confidence 2 2233 34455556666554 789999999999999987533333333 23345788899885 467999999998
Q ss_pred EEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC--CeEEEecCCCeEEEEeCCCceeeeccCCCCcceE
Q 019384 212 VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY--GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA 289 (342)
Q Consensus 212 ~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~--~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~ 289 (342)
++ +|.+. +....+.+.+|.+ .|+||.|-+.| .+|+||+.|.+|+|||.++..|++++.||...|.
T Consensus 165 VK--VWslg--s~~~nfTl~gHek---------GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs 231 (794)
T KOG0276|consen 165 VK--VWSLG--SPHPNFTLEGHEK---------GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVS 231 (794)
T ss_pred EE--EEEcC--CCCCceeeecccc---------CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccce
Confidence 75 58884 3456678889887 49999998754 5899999999999999999999999999999999
Q ss_pred EEEECCCCCEEEEEEecc
Q 019384 290 ALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 290 ~v~~spdg~~las~s~~~ 307 (342)
.+.|.|.=.++++||.++
T Consensus 232 ~v~fhp~lpiiisgsEDG 249 (794)
T KOG0276|consen 232 FVFFHPELPIIISGSEDG 249 (794)
T ss_pred EEEecCCCcEEEEecCCc
Confidence 999999999999999765
No 100
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=1.4e-21 Score=179.86 Aligned_cols=271 Identities=18% Similarity=0.213 Sum_probs=204.3
Q ss_pred CCCeEEEEEcCCCC---eEEEEeCCCcEEEEECCC-cee---------eeeeecCCceEEEEEeCCCCeEEEecCCcEEE
Q 019384 19 SDGISNLRFSNHSD---HLLVSSWDKSVRLYDASA-NVL---------RGEFMHGGPVLDCCFHDDSSGFSASADHTVRR 85 (342)
Q Consensus 19 ~~~V~~l~fs~~~~---~l~s~s~Dgti~vwd~~~-~~~---------~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~ 85 (342)
+..|-++.+-|.+. .|++ -.++++.+|-+.. +.. +...+|...|.+++++.+..++..++.+.+++
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Siki 398 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKI 398 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEE
Confidence 45677778877653 3344 6788999998754 221 44558999999999998877776667789999
Q ss_pred EEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc
Q 019384 86 LVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA 164 (342)
Q Consensus 86 w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~ 164 (342)
|+..+.++ +++. ...+.+..|.|.+.++++|...|.+.++|+.+..... ....|....-..++.+++..++++++
T Consensus 399 Wn~~t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E--ti~AHdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 399 WNRDTLKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE--TIRAHDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred EEccCcceeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh--hhhccccceeeeeecCCCCceEEecC
Confidence 99987764 3332 2378899999999999999999999999997644321 22233222223345556678999999
Q ss_pred CCeEEEEeCCCCCC-c---------ccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEE
Q 019384 165 GRHVNVYDLRNMSQ-P---------EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234 (342)
Q Consensus 165 d~~v~iwd~~~~~~-~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~ 234 (342)
|++|++||..-... + .+.....+...+.|++++||+++++++-.|+++.+++.|.- .....+=+|.
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl----KFflsLYGHk 550 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL----KFFLSLYGHK 550 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce----eeeeeecccc
Confidence 99999999642111 0 01112234456789999999999999999999999888752 2222344555
Q ss_pred ecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
. ||.|+..|||+.+++|||.|++|+||-++=|.|-+.+..|...|.++.|-|+...+-+++.+.
T Consensus 551 L---------PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 551 L---------PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG 614 (888)
T ss_pred c---------ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence 4 899999999999999999999999999888888889999999999999999999999888743
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.6e-21 Score=154.37 Aligned_cols=240 Identities=21% Similarity=0.275 Sum_probs=171.0
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc------eeeeeeecCCceEEEEEeCC----CCeE-EEe-cCCcEE
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN------VLRGEFMHGGPVLDCCFHDD----SSGF-SAS-ADHTVR 84 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~------~~~~~~~h~~~V~~~~~~~~----~~~~-s~s-~D~~i~ 84 (342)
-|.+.|++++|||.|++|||||.|++|++...... .-..+..|.+.|..++|.++ +.++ +++ .|..|.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 34789999999999999999999999999876432 22344569999999999733 2333 433 455666
Q ss_pred EEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec-------CCCCcEEEEeccC
Q 019384 85 RLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY-------PQPERVYSLSLVG 156 (342)
Q Consensus 85 ~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~-------~~~~~v~~~s~~~ 156 (342)
+-|...+. ...+.+|++-|.++ ++.++-.|++||.|++||.||++-.... ..+... ......+++++.+
T Consensus 167 ~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v--~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 167 ITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCV--NTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred EeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecccee--eeccCcccCCCcccceeEEEEECCCc
Confidence 66665555 35688999999888 5667889999999999999999743221 112111 1112334566667
Q ss_pred CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh--hcccceeeeEE
Q 019384 157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS--QAKKYAFKCHR 234 (342)
Q Consensus 157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~--~~~~~~~~~h~ 234 (342)
..++++-+|....+||+|.++. ++++ .++...+.||.|+|...++++++-|..++ +-|+...- .........|.
T Consensus 244 rll~sg~~dssc~lydirg~r~-iq~f-~phsadir~vrfsp~a~yllt~syd~~ik--ltdlqgdla~el~~~vv~ehk 319 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRM-IQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIK--LTDLQGDLAHELPIMVVAEHK 319 (350)
T ss_pred ceeeeccCCCceEEEEeeCCce-eeee-CCCccceeEEEeCCCceEEEEecccceEE--EeecccchhhcCceEEEEecc
Confidence 7899999999999999998743 3433 34556789999999999999999988765 46664321 11111222232
Q ss_pred ecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG 272 (342)
Q Consensus 235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~ 272 (342)
. .+-.+.|+|..-.+++.+.|.++.+|-.
T Consensus 320 d---------k~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 320 D---------KAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred C---------ceEEEEecCccceeeeccCcceEEEecc
Confidence 2 2456899998888999999999999964
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=169.77 Aligned_cols=244 Identities=24% Similarity=0.302 Sum_probs=181.8
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECC------C--------c--e-------------------------ee
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDAS------A--------N--V-------------------------LR 54 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~------~--------~--~-------------------------~~ 54 (342)
.+|.+.|++|+|++.+.+++|+|.|++.-||... . + + +.
T Consensus 187 ~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~ 266 (481)
T KOG0300|consen 187 TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLM 266 (481)
T ss_pred cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeee
Confidence 5899999999999999999999999999999821 0 0 0 11
Q ss_pred eeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384 55 GEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132 (342)
Q Consensus 55 ~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~ 132 (342)
.+.+|.+.|.++.|. .+.+++++|.|.+..+||++++.. ..+.+|....+-|.-+|..++++|+|.|.+.|+||++..
T Consensus 267 ~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 267 RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred eeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh
Confidence 233688999999997 455678999999999999999984 568999999999999999999999999999999999832
Q ss_pred CCcceeeeeecCCCCcEEEEecc-CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe
Q 019384 133 SGQERTLVGTYPQPERVYSLSLV-GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR 211 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~v~~~s~~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~ 211 (342)
......++. ++..+.+..+. ++.+++++.|.+|++||++++..+.... .....++.++++..+..+++--.+..
T Consensus 347 -I~sV~VFQG--HtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATI--RtdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 347 -IQSVAVFQG--HTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATI--RTDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred -cceeeeecc--cccceeEEEEecCCceeecCCCceEEEeeeccccCcceee--ecCCccceeEeecCCceEEeccCCce
Confidence 222222332 45667777774 5689999999999999999986553221 12234566777776666666665555
Q ss_pred EEEEEeechhhhhcc--cceeeeEEecCCCCceeeeeeEEEEcCCC--CeEEEecCCCeEEEEeCCCc
Q 019384 212 VAMEFFDLSEASQAK--KYAFKCHRKSEAGRDIVYPVNAIAFHPIY--GTFATGGCDGFVNVWDGNNK 275 (342)
Q Consensus 212 ~~i~~~d~~~~~~~~--~~~~~~h~~~~~~~~~~~~v~~v~~sp~~--~~l~sgs~Dg~I~iWd~~~~ 275 (342)
+ ++||+......+ +..-++|+. .|.|++|..+. .-|++|+.|+.+.-|.+...
T Consensus 422 v--RlfDlnG~RlaRlPrtsRqgHrR---------MV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 422 V--RLFDLNGNRLARLPRTSRQGHRR---------MVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred E--EEEecCCCccccCCcccccccce---------eeeeeeccccCcccccccccccceeeeeEeccc
Confidence 4 569986443222 123446665 48999997543 35889999999999988653
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=6.8e-22 Score=183.77 Aligned_cols=287 Identities=18% Similarity=0.249 Sum_probs=210.3
Q ss_pred CCCCCccCCCC-CC-CCeEEEEEcCCCCe-EEEEeCCCcEEEEECCCceeeee--eecCCceEEEEEeCCCCe-EEEecC
Q 019384 7 PPTSGRELGNP-PS-DGISNLRFSNHSDH-LLVSSWDKSVRLYDASANVLRGE--FMHGGPVLDCCFHDDSSG-FSASAD 80 (342)
Q Consensus 7 ~~~~~~~~~~~-~~-~~V~~l~fs~~~~~-l~s~s~Dgti~vwd~~~~~~~~~--~~h~~~V~~~~~~~~~~~-~s~s~D 80 (342)
|...++.|... +. +.|++++|..||+. ||+|+..|.+-+||+...++... -.|.+.|....|.++.-+ ++++.|
T Consensus 230 NlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D 309 (910)
T KOG1539|consen 230 NLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD 309 (910)
T ss_pred EcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC
Confidence 34556666643 33 79999999999976 56667779999999998776543 369899999999877665 699999
Q ss_pred CcEEEEEeccCc--ee---ecccCCcceeEEEEe-CCCCEEEEeeCCCcEEEEcCCCCC-----Cc-----------ce-
Q 019384 81 HTVRRLVFSHGK--ED---ILGKHDAPVRCIEYS-YAAGQVITGSWDKSLKCWDPRGAS-----GQ-----------ER- 137 (342)
Q Consensus 81 ~~i~~w~~~~~~--~~---~~~~h~~~V~~~~~~-~~~~~l~sgs~D~~I~iWd~~~~~-----~~-----------~~- 137 (342)
+.+++|..+++. .+ .-.||..+-.|+.|. .++..+++++.|++.+.+++.... ++ ..
T Consensus 310 nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~ 389 (910)
T KOG1539|consen 310 NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFS 389 (910)
T ss_pred CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccc
Confidence 999999888665 22 336899999999988 466778899999988877542100 00 00
Q ss_pred ---------e--------------eeeec-----------------------------CCCCcEEEEeccCCeEEEEEcC
Q 019384 138 ---------T--------------LVGTY-----------------------------PQPERVYSLSLVGNRLVVATAG 165 (342)
Q Consensus 138 ---------~--------------~~~~~-----------------------------~~~~~v~~~s~~~~~~~~~s~d 165 (342)
. .+..+ ......++++..|+..+.|++.
T Consensus 390 ~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~ 469 (910)
T KOG1539|consen 390 TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK 469 (910)
T ss_pred hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC
Confidence 0 00000 0011234456668888889999
Q ss_pred CeEEEEeCCCCCCcccc-cccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceee
Q 019384 166 RHVNVYDLRNMSQPEQR-RESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVY 244 (342)
Q Consensus 166 ~~v~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~ 244 (342)
|+|-+|+++.+-..... ....++..++.+++...++.+++++.+|.+ .+||.........+. ...
T Consensus 470 G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil--kfw~f~~k~l~~~l~------------l~~ 535 (910)
T KOG1539|consen 470 GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL--KFWDFKKKVLKKSLR------------LGS 535 (910)
T ss_pred CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE--EEEecCCcceeeeec------------cCC
Confidence 99999999886332111 123455678888888888888999888864 689985432111111 112
Q ss_pred eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
++.++.+|.....++.+..|=.|+++|..+.+.++.+.+|.++|++++|||||++|++++.+.
T Consensus 536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~ 598 (910)
T KOG1539|consen 536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS 598 (910)
T ss_pred CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence 577888999899999999999999999999999999999999999999999999999999855
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.4e-22 Score=169.30 Aligned_cols=246 Identities=19% Similarity=0.235 Sum_probs=171.5
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEEeCCCCeEEEecCC-cEEEEEeccC
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHDDSSGFSASADH-TVRRLVFSHG 91 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~~~~~~s~s~D~-~i~~w~~~~~ 91 (342)
..|.+.|+.|.|.|-...|+||+.|++|++||.+... ....+....+|.++.|+|.+..+..+.|. ++++||+.+-
T Consensus 169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence 4688999999999999999999999999999997542 12233456789999999998887666665 7899999987
Q ss_pred ceee----cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--EeccCCeEEEEEcC
Q 019384 92 KEDI----LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLVGNRLVVATAG 165 (342)
Q Consensus 92 ~~~~----~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~~~~~~~~s~d 165 (342)
+... -.+|++.|+++.+++.+++-+|+|.||.|||||=-+..+ ...+........+++ |..+++++++.+.|
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 7432 357999999999999999999999999999999433222 112222222334444 45567899999999
Q ss_pred CeEEEEeCCCCCCccccccccccee--eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384 166 RHVNVYDLRNMSQPEQRRESSLKYQ--TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV 243 (342)
Q Consensus 166 ~~v~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~ 243 (342)
..+++|.+.+++....-........ ...-+.+....-+++--.+.+..+.-||.+.......+.+ +|.
T Consensus 327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl----------gHn 396 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL----------GHN 396 (430)
T ss_pred ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc----------CCC
Confidence 9999999998765433222211111 0011111111112222233334456799876654444332 334
Q ss_pred eeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
++++++..||.+.-+++||.|..+|+|-.+
T Consensus 397 ~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 397 GAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceEEEeCCCCCceeeecccceeeeeeec
Confidence 579999999999999999999999999643
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=9.6e-22 Score=170.77 Aligned_cols=243 Identities=17% Similarity=0.179 Sum_probs=180.4
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccCce
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~~ 93 (342)
.+|...|+++.|+++...+++++.|..||||...... ......|..+|+.+...+.+ .+++++.|+++...|++++..
T Consensus 258 ~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~ 337 (506)
T KOG0289|consen 258 KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ 337 (506)
T ss_pred cCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE
Confidence 5888999999999999999999999999999986543 33445699999999998654 567999999999999988875
Q ss_pred eecccCC---cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384 94 DILGKHD---APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV 170 (342)
Q Consensus 94 ~~~~~h~---~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i 170 (342)
.....|. -.+++++|+|||-.|.+|+.|+.+++||+.++.. ...+..+..+.+.++|+-+|..+++++.|+.|++
T Consensus 338 lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~--~a~Fpght~~vk~i~FsENGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 338 LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN--VAKFPGHTGPVKAISFSENGYWLATAADDGSVKL 415 (506)
T ss_pred EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc--cccCCCCCCceeEEEeccCceEEEEEecCCeEEE
Confidence 5443342 3488999999999999999999999999986543 2233344445555566667789999999999999
Q ss_pred EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250 (342)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 250 (342)
||+|..+...... ..-...+..+.+...|+++++++. ++.+++++-..........+. ++.+..+++.
T Consensus 416 wDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~L~~~g~--~l~Vy~~~k~~k~W~~~~~~~---------~~sg~st~v~ 483 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTYLGIAGS--DLQVYICKKKTKSWTEIKELA---------DHSGLSTGVR 483 (506)
T ss_pred EEehhhcccceee-ccccccceeEEEcCCCCeEEeecc--eeEEEEEecccccceeeehhh---------hcccccceee
Confidence 9999865322221 122235788889999999888844 455555653222111111122 2233578899
Q ss_pred EcCCCCeEEEecCCCeEEEEeC
Q 019384 251 FHPIYGTFATGGCDGFVNVWDG 272 (342)
Q Consensus 251 ~sp~~~~l~sgs~Dg~I~iWd~ 272 (342)
|....++++++|-|..++++..
T Consensus 484 Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 484 FGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccceEEeeccchhheEEeec
Confidence 9999999999999999998753
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=9.6e-22 Score=171.91 Aligned_cols=250 Identities=18% Similarity=0.212 Sum_probs=180.2
Q ss_pred CCCCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEe-CCCCeEEEecCCc
Q 019384 5 HPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFH-DDSSGFSASADHT 82 (342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~-~~~~~~s~s~D~~ 82 (342)
|+.|..-.. ..|...|.+++.|+||++||||+.|..|.||+..+.+.+. +.+|.+.|.+++|- .-.+++++|.|.+
T Consensus 190 ~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drs 267 (479)
T KOG0299|consen 190 HGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRS 267 (479)
T ss_pred ccCCCCccc--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCc
Confidence 555554443 4899999999999999999999999999999999876544 46899999999997 4457899999999
Q ss_pred EEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEE
Q 019384 83 VRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLV 160 (342)
Q Consensus 83 i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~ 160 (342)
+++|+++... ...+.+|.+.|.++........+-.|+-|+++++|++...+ +.++.. +...+-++++ +.+.++
T Consensus 268 vkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---qlifrg--~~~sidcv~~In~~Hfv 342 (479)
T KOG0299|consen 268 VKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QLIFRG--GEGSIDCVAFINDEHFV 342 (479)
T ss_pred eEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc---eeeeeC--CCCCeeeEEEeccccee
Confidence 9999998766 45788999999999877545444446699999999984322 223332 2333445555 567899
Q ss_pred EEEcCCeEEEEeCCCCCCcccccc-cc---------cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee
Q 019384 161 VATAGRHVNVYDLRNMSQPEQRRE-SS---------LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF 230 (342)
Q Consensus 161 ~~s~d~~v~iwd~~~~~~~~~~~~-~~---------~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~ 230 (342)
+|+.+|.|.+|++...+....... +. .+..+++++..|....+++++.+|.+++ |-+.+.......
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrL--W~i~~g~r~i~~-- 418 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRL--WKIEDGLRAINL-- 418 (479)
T ss_pred eccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEE--EEecCCccccce--
Confidence 999999999999987654322111 11 1135788999999999999999998765 766544221111
Q ss_pred eeEEecCCCCceeeeeeEEEEcCCCCeEEEe-cCCCeEEEEe
Q 019384 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATG-GCDGFVNVWD 271 (342)
Q Consensus 231 ~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg-s~Dg~I~iWd 271 (342)
-.. ....+-|++++|+++|+++++| +....+--|-
T Consensus 419 l~~------ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 419 LYS------LSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred eee------cccccEEEEEEEccCCCEEEEecccccccceee
Confidence 110 0123469999999999966554 5555555553
No 107
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=2.6e-21 Score=176.69 Aligned_cols=292 Identities=16% Similarity=0.160 Sum_probs=206.2
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--e-----eeeeee-cCCceEEEEEeCCCCe-EEEecCCcEE
Q 019384 14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--V-----LRGEFM-HGGPVLDCCFHDDSSG-FSASADHTVR 84 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~-----~~~~~~-h~~~V~~~~~~~~~~~-~s~s~D~~i~ 84 (342)
|.-+|+++|+++-|.|++..|+|+|+|+++.||...+. . ..++.+ ..+..+++.|++++.. ++-+.-|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 34599999999999999999999999999999997543 2 223333 3456889999877655 4667888999
Q ss_pred EEEeccCc----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEecc--CC
Q 019384 85 RLVFSHGK----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLV--GN 157 (342)
Q Consensus 85 ~w~~~~~~----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~--~~ 157 (342)
+|-..... +..+.||.+.|+.++|.|.|++|+|.|.|.|=|++-.- +.+..-..+...+ |.-...++++- +.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccCCc
Confidence 99732221 34678999999999999999999999999999998643 1111111111111 11223445542 34
Q ss_pred eEEEEEcCCeEEEEeCCCC--------------------------------CCcc--------------c----------
Q 019384 158 RLVVATAGRHVNVYDLRNM--------------------------------SQPE--------------Q---------- 181 (342)
Q Consensus 158 ~~~~~s~d~~v~iwd~~~~--------------------------------~~~~--------------~---------- 181 (342)
.++++...+-+|+|+.... +... +
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 6676666677888874210 0000 0
Q ss_pred ------------------ccccccceeeEEEEEeeCCceEEEEccCCe---EEEEEeechhhhhcccceeeeEEecCCCC
Q 019384 182 ------------------RRESSLKYQTRCVRCYPNGTGYALSSVEGR---VAMEFFDLSEASQAKKYAFKCHRKSEAGR 240 (342)
Q Consensus 182 ------------------~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~---~~i~~~d~~~~~~~~~~~~~~h~~~~~~~ 240 (342)
...-.+.+.+.+++++|+++.++++..... -.|++|+.....+ ...+..|..
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~--~~~L~~HsL----- 573 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ--VQELEGHSL----- 573 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh--hheecccce-----
Confidence 000013455788999999999988865433 3468899865433 335666765
Q ss_pred ceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce----eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCC
Q 019384 241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK----RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHE 316 (342)
Q Consensus 241 ~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~----~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~ 316 (342)
.|+.++||||+++|++.|-|+++.+|..+... .....+.|+.-|++..|+||+++||++|.+-
T Consensus 574 ----TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK--------- 640 (764)
T KOG1063|consen 574 ----TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK--------- 640 (764)
T ss_pred ----EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc---------
Confidence 59999999999999999999999999875321 1233678999999999999999999999876
Q ss_pred CCcEEEEEccCC
Q 019384 317 PDAIFVRSVNEI 328 (342)
Q Consensus 317 ~~~~~~~~~~~~ 328 (342)
.+.+|+..+.
T Consensus 641 --~VkVW~~~~~ 650 (764)
T KOG1063|consen 641 --KVKVWEEPDL 650 (764)
T ss_pred --eEEEEeccCc
Confidence 5777877665
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.2e-22 Score=161.31 Aligned_cols=247 Identities=21% Similarity=0.208 Sum_probs=175.2
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc---e-eeeeeecCCceEEEEEe-C--CCCeEEEecCCcEEEE
Q 019384 14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN---V-LRGEFMHGGPVLDCCFH-D--DSSGFSASADHTVRRL 86 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~---~-~~~~~~h~~~V~~~~~~-~--~~~~~s~s~D~~i~~w 86 (342)
....|.+-|..+..+=-|.+|||+|.|++|||+.+... . +..+.+|+|+|+.+.|. | +..+++|++|+.+.+|
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 45788999999888888999999999999999998643 2 34456899999999996 3 3345799999999999
Q ss_pred EeccCcee---ecccCCcceeEEEEeCCC--CEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEEEecc-----
Q 019384 87 VFSHGKED---ILGKHDAPVRCIEYSYAA--GQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYSLSLV----- 155 (342)
Q Consensus 87 ~~~~~~~~---~~~~h~~~V~~~~~~~~~--~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~~s~~----- 155 (342)
.-.+++.. ....|...|++++|-|.+ -.|++++.||.|.+.+.++... ....+... |+..+.++++.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a--H~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA--HEIGVNSVSWAPASAP 163 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc--cccccceeeecCcCCC
Confidence 88777632 346799999999999964 4578999999999998765411 11112222 33333344332
Q ss_pred C-----------CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCC----ceEEEEccCCeEEEEEeech
Q 019384 156 G-----------NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLS 220 (342)
Q Consensus 156 ~-----------~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~s~~~~~~i~~~d~~ 220 (342)
+ ..|++++.|+.|+||+..+.+=........+..-+..+++.|.- ..++++++|+++.| |..+
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI--wt~~ 241 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII--WTKD 241 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE--EEec
Confidence 1 36999999999999998875322222223344456778888764 35889999998866 5554
Q ss_pred hhhhccc-ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 221 EASQAKK-YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 221 ~~~~~~~-~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
......+ ..+.. -.-++..+.||+.|..|+.++-|..|++|.-.
T Consensus 242 ~e~e~wk~tll~~---------f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 242 EEYEPWKKTLLEE---------FPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CccCccccccccc---------CCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2211111 11110 01258889999999999999999999999643
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=4.7e-20 Score=163.61 Aligned_cols=275 Identities=15% Similarity=0.110 Sum_probs=178.6
Q ss_pred CeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe--EEEecCCcEEEEEeccCcee-ecccCCcceeEEEE
Q 019384 32 DHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG--FSASADHTVRRLVFSHGKED-ILGKHDAPVRCIEY 108 (342)
Q Consensus 32 ~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~--~s~s~D~~i~~w~~~~~~~~-~~~~h~~~V~~~~~ 108 (342)
+.++|++.|+++++||+.+++....+.+...+.++.|++++.. ++++.++.+++|+..+++.. .+..+. .+..++|
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~ 80 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFAL 80 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEE
Confidence 5788999999999999988776666655556788999887764 35667899999999877643 233333 3567899
Q ss_pred eCCCCEEE-EeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC-eEEEEeCCCCCCcccccccc
Q 019384 109 SYAAGQVI-TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR-HVNVYDLRNMSQPEQRRESS 186 (342)
Q Consensus 109 ~~~~~~l~-sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~-~v~iwd~~~~~~~~~~~~~~ 186 (342)
+|+++.++ +++.|+.|++||+++... ...+. .........++.+++.+++++.++ .+..||..+....... .
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---~ 154 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKV--LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---L 154 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeE--EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---E
Confidence 99998775 556789999999875321 11111 111223345666777888777664 4677898765322111 1
Q ss_pred cceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEE-EecCC
Q 019384 187 LKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFA-TGGCD 264 (342)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~-sgs~D 264 (342)
......+++++|+++.+++++ .++.+ .+||.........+.+.. ..... . ......++|+|++++++ +.+.+
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v--~i~d~~~~~~~~~~~~~~--~~~~~-~-~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTV--SVIDVATRKVIKKITFEI--PGVHP-E-AVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEE--EEEEcCcceeeeeeeecc--ccccc-c-cCCccceEECCCCCEEEEEcCCC
Confidence 122345688999998876554 46654 669986543222221111 00000 0 00134588999999854 44567
Q ss_pred CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCcc
Q 019384 265 GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEV 330 (342)
Q Consensus 265 g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (342)
+.|.+||.++++.+..+. +...+.+++|+|||++|++++... + .|.+|+++...+
T Consensus 229 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~---~-------~i~v~d~~~~~~ 283 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVS---N-------DVSVIDVAALKV 283 (300)
T ss_pred CeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCC---C-------eEEEEECCCCcE
Confidence 789999999877665443 335789999999999998875422 2 388888876543
No 110
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.1e-21 Score=166.58 Aligned_cols=286 Identities=14% Similarity=0.199 Sum_probs=203.6
Q ss_pred cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc---eeeeeeecCCceEEEEEeCCCC--eEEEecCCcEEEEE
Q 019384 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN---VLRGEFMHGGPVLDCCFHDDSS--GFSASADHTVRRLV 87 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~---~~~~~~~h~~~V~~~~~~~~~~--~~s~s~D~~i~~w~ 87 (342)
+...+...+|++|.|.|..+.|++|+.|++++||.+++. ++....--.-+|.+++|.|.++ +++++-......||
T Consensus 207 Na~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 207 NAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred ccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 444566789999999999999999999999999999753 2334444567899999998776 45777777889999
Q ss_pred eccCceee---cccCC-cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--EeccCCeEEE
Q 019384 88 FSHGKEDI---LGKHD-APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLVGNRLVV 161 (342)
Q Consensus 88 ~~~~~~~~---~~~h~-~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~~~~~~~ 161 (342)
+.+.+... ..++. ..+...+.++++++|+..+..|.|.+.-..+. + .+...+....+.. |+.++..+++
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~--e---li~s~KieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK--E---LITSFKIEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh--h---hhheeeeccEEeeEEEecCCcEEEE
Confidence 98887543 33444 46778899999999999999999999875432 1 2333333444444 4445678888
Q ss_pred EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh---hcccceeeeEEecCC
Q 019384 162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS---QAKKYAFKCHRKSEA 238 (342)
Q Consensus 162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~---~~~~~~~~~h~~~~~ 238 (342)
++++|.|.+||++.......... .-..+.+.++.++++.++++|+..|-|+| ||..... .++. + ..
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNI--Yd~~s~~~s~~PkP--i------k~ 430 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNI--YDGNSCFASTNPKP--I------KT 430 (514)
T ss_pred EcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEE--eccchhhccCCCCc--h------hh
Confidence 88999999999998744333222 22235667778899999999999998876 6643221 1110 0 01
Q ss_pred CCceeeeeeEEEEcCCCCeEEEec--CCCeEEEEeCCCceeeeccCC---CCcceEEEEECCCCCEEEEEEeccccCCCC
Q 019384 239 GRDIVYPVNAIAFHPIYGTFATGG--CDGFVNVWDGNNKKRLYQYSK---YPTSIAALSFSRDGRLLAVASSYTFEEGDK 313 (342)
Q Consensus 239 ~~~~~~~v~~v~~sp~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~---~~~~V~~v~~spdg~~las~s~~~~~~~~~ 313 (342)
-......|+++.|+|+++.||.+| .+..+|+--+-+...-..++. -.+.|+||+|||.|-+||+|-. .|+
T Consensus 431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe----~gr- 505 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE----AGR- 505 (514)
T ss_pred hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC----CCc-
Confidence 122334699999999999998877 466888887665443333332 2356899999999999999844 345
Q ss_pred CCCCCcEEEEEc
Q 019384 314 PHEPDAIFVRSV 325 (342)
Q Consensus 314 ~~~~~~~~~~~~ 325 (342)
+.||++
T Consensus 506 ------v~l~kL 511 (514)
T KOG2055|consen 506 ------VHLFKL 511 (514)
T ss_pred ------eeeEee
Confidence 777766
No 111
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=2.4e-21 Score=175.53 Aligned_cols=294 Identities=17% Similarity=0.181 Sum_probs=195.3
Q ss_pred EEEEEcCC---CCeEEEEeCCCcEEEEECCCce-------eeeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccC
Q 019384 23 SNLRFSNH---SDHLLVSSWDKSVRLYDASANV-------LRGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHG 91 (342)
Q Consensus 23 ~~l~fs~~---~~~l~s~s~Dgti~vwd~~~~~-------~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~ 91 (342)
++..|++. ...|+.+-.||.|.++|..... +.....|.+.|.++.|.++. ++++++.|.+++.||+.+.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 34777763 4568889999999999986432 34445799999999998754 4579999999999999988
Q ss_pred ce---eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCC--cc---eeeeeec------------------C
Q 019384 92 KE---DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASG--QE---RTLVGTY------------------P 144 (342)
Q Consensus 92 ~~---~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~--~~---~~~~~~~------------------~ 144 (342)
+. ..+.+|+..|.+++|.|.+ ..|++|+.||.|.|||++-... .. ......+ .
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 73 3478999999999999966 5689999999999999862210 00 0000000 0
Q ss_pred CCCc----EEEE-eccCCeEEEEEc-CCeEEEEeCCCCCCcccccc---ccc------ceeeEEEEEeeCCceEEEEccC
Q 019384 145 QPER----VYSL-SLVGNRLVVATA-GRHVNVYDLRNMSQPEQRRE---SSL------KYQTRCVRCYPNGTGYALSSVE 209 (342)
Q Consensus 145 ~~~~----v~~~-s~~~~~~~~~s~-d~~v~iwd~~~~~~~~~~~~---~~~------~~~~~~v~~~~~~~~~~~~s~~ 209 (342)
.... |..+ ..+.+.++++++ |+.|++||++.......... ... ...+.++.....|.++.....|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 0111 2222 335678998888 99999999997643211110 011 1224556666677777766667
Q ss_pred CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce-eeeccCCCCcce
Q 019384 210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSI 288 (342)
Q Consensus 210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V 288 (342)
+.| ++|++..-.......+.++.... . -..-..+|++.+|++|++|..+++|.+.+.. ....+.+|.-.|
T Consensus 293 ~sI--y~ynm~s~s~sP~~~~sg~~~~s-----f--~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV 363 (720)
T KOG0321|consen 293 NSI--YFYNMRSLSISPVAEFSGKLNSS-----F--YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV 363 (720)
T ss_pred CcE--EEEeccccCcCchhhccCcccce-----e--eeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence 765 67998654333333333332210 0 1122468999999999999999999998754 356778999999
Q ss_pred EEEEECCCCC-EEEEEEeccccCCCCCCCCCcEEEEEccC-CccccCCCC
Q 019384 289 AALSFSRDGR-LLAVASSYTFEEGDKPHEPDAIFVRSVNE-IEVKPKPKA 336 (342)
Q Consensus 289 ~~v~~spdg~-~las~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 336 (342)
++++|.|..- -+|++ ++|+ .+.+|.++. +...+.++.
T Consensus 364 t~V~w~pS~~t~v~Tc-SdD~----------~~kiW~l~~~l~e~~~adk 402 (720)
T KOG0321|consen 364 TTVRWLPSATTPVATC-SDDF----------RVKIWRLSNGLEEIYAADK 402 (720)
T ss_pred EEEeeccccCCCceee-ccCc----------ceEEEeccCchhhcccccc
Confidence 9999977433 34455 4441 467777753 444444443
No 112
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.1e-20 Score=169.43 Aligned_cols=268 Identities=15% Similarity=0.153 Sum_probs=197.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeec---CCceEEEEEeCCCCeEEEecCCcEEEEEeccCcee-
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH---GGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKED- 94 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h---~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~- 94 (342)
..+|.++||+.+++.||.+-.||+|.||++..+-......| ...|.+++|.+++++++.+.+|+|.-||+.+.+..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence 57999999999999999999999999999987654333323 45799999999999999999999999999988754
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec-CCCCcEEEEeccCC--eEEEEEcCCeEEEE
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY-PQPERVYSLSLVGN--RLVVATAGRHVNVY 171 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~v~~~s~~~~--~~~~~s~d~~v~iw 171 (342)
.+..-.+.|++++.+|.++.++.|+.||.+..++...+... ..... ..+.++++++++++ .++.|+.||.|++|
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~---~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT---YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE---EEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 45556689999999999999999999998777776533221 11122 23467888888765 57999999999999
Q ss_pred eCCCCCCccccc--ccc----cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384 172 DLRNMSQPEQRR--ESS----LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP 245 (342)
Q Consensus 172 d~~~~~~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~ 245 (342)
|+..+....... .-. -+.-+.+|.+..++ .++++...|+ ++|||...+... ..+.+|.. .
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~--V~FWd~~~gTLi--qS~~~h~a---------d 247 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT--VTFWDSIFGTLI--QSHSCHDA---------D 247 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce--EEEEcccCcchh--hhhhhhhc---------c
Confidence 998764332100 001 11224456666554 3666655565 578998655433 33455554 3
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeCCCcee----eeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR----LYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~----~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
|.|++..+++.++++++.|+.|.-+...+.+. ......|...|.+++..++ .|.+|+.
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~ 309 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR 309 (691)
T ss_pred eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence 89999999999999999999999998765533 2234568889999999987 5555654
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.6e-20 Score=156.30 Aligned_cols=231 Identities=17% Similarity=0.219 Sum_probs=166.9
Q ss_pred cCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeC--CCcEEEEcCCCCCC
Q 019384 59 HGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSW--DKSLKCWDPRGASG 134 (342)
Q Consensus 59 h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~--D~~I~iWd~~~~~~ 134 (342)
-.+.|.++.|++++.. ++++.|.++++||...+.. ..+..+.-.|..+.|......++.++. |.+||..++.....
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 4678999999977765 5778888999999988774 455555567888888877777766666 89999999875322
Q ss_pred cceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeE
Q 019384 135 QERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV 212 (342)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~ 212 (342)
...+.. |...|.+++. -++.+++++.|++|++||+|..+........ .....++.|+|-.+|++...+
T Consensus 93 --lRYF~G--H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~----~~pi~AfDp~GLifA~~~~~~-- 162 (311)
T KOG1446|consen 93 --LRYFPG--HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS----GRPIAAFDPEGLIFALANGSE-- 162 (311)
T ss_pred --EEEcCC--CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC----CCcceeECCCCcEEEEecCCC--
Confidence 122222 3455655554 4679999999999999999965443222111 234567999999999888776
Q ss_pred EEEEeechhhhh-cc-cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce--
Q 019384 213 AMEFFDLSEASQ-AK-KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI-- 288 (342)
Q Consensus 213 ~i~~~d~~~~~~-~~-~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V-- 288 (342)
.|++||.+.-.. +. .+.+.. ...-..+.+.|||||+.++.+...+.+++.|.-+|..+.++.+++..-
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~--------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITD--------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred eEEEEEecccCCCCceeEccCC--------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 457799875321 11 122211 001136789999999999999999999999999998888887776533
Q ss_pred -EEEEECCCCCEEEEEEecc
Q 019384 289 -AALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 289 -~~v~~spdg~~las~s~~~ 307 (342)
-+..|+|||+++.+|+.++
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg 254 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDG 254 (311)
T ss_pred ceeEEECCCCcEEEEecCCC
Confidence 6889999999999888754
No 114
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.8e-21 Score=158.38 Aligned_cols=248 Identities=16% Similarity=0.220 Sum_probs=161.7
Q ss_pred CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC--cee---eeeeecCCceEEEEEe-C-CCC-eEEEecCCcEEEE
Q 019384 15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA--NVL---RGEFMHGGPVLDCCFH-D-DSS-GFSASADHTVRRL 86 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~--~~~---~~~~~h~~~V~~~~~~-~-~~~-~~s~s~D~~i~~w 86 (342)
-..|.+-|+++.|+..|+++||||.|++++|||... +.. -.-..|.+.|..+.|. | =++ +++||.|+++.+|
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 357888999999999999999999999999999643 222 2235799999999996 3 244 4699999999999
Q ss_pred EeccCc----------eeecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec
Q 019384 87 VFSHGK----------EDILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL 154 (342)
Q Consensus 87 ~~~~~~----------~~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~ 154 (342)
.=.... ...+..-...|+.+.|.|. |-.+++++.||++|||+.-......+..+. ++...+ .++
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq---~Ei~~~-~~p 164 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ---HEIQNV-IDP 164 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh---hhhhhc-cCC
Confidence 642111 1235566788999999985 446899999999999985321111111111 111000 000
Q ss_pred cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC---CceEEEEccC-----CeEEEEEeechhhhh--
Q 019384 155 VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN---GTGYALSSVE-----GRVAMEFFDLSEASQ-- 224 (342)
Q Consensus 155 ~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~s~~-----~~~~i~~~d~~~~~~-- 224 (342)
-++ ....-.||+|.|. .+.+++++.+ +++ ++|...+...
T Consensus 165 p~~-----------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~--~Iye~~e~~rKw 213 (361)
T KOG2445|consen 165 PGK-----------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV--KIYEYNENGRKW 213 (361)
T ss_pred ccc-----------------------------ccCcceEEeeccccccCceEEEEcccCCccccce--EEEEecCCccee
Confidence 000 0011234444432 2446666654 233 3455433221
Q ss_pred cccceeeeEEecCCCCceeeeeeEEEEcCC----CCeEEEecCCCeEEEEeCCC--------------------ceeeec
Q 019384 225 AKKYAFKCHRKSEAGRDIVYPVNAIAFHPI----YGTFATGGCDGFVNVWDGNN--------------------KKRLYQ 280 (342)
Q Consensus 225 ~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~----~~~l~sgs~Dg~I~iWd~~~--------------------~~~~~~ 280 (342)
.+.-.+. ++.-+|..++|.|+ ...||+++.|| |+||.+.. -+.+..
T Consensus 214 ~kva~L~---------d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~ 283 (361)
T KOG2445|consen 214 LKVAELP---------DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE 283 (361)
T ss_pred eeehhcC---------CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence 1111222 33348999999997 34689999999 99998762 023456
Q ss_pred cCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 281 YSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 281 ~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
+.+|+..|+.++|+-.|..|++.+.++
T Consensus 284 ~~~H~~~VWrv~wNmtGtiLsStGdDG 310 (361)
T KOG2445|consen 284 LDDHNGEVWRVRWNMTGTILSSTGDDG 310 (361)
T ss_pred ccCCCCceEEEEEeeeeeEEeecCCCc
Confidence 779999999999999999999888765
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=6e-20 Score=162.94 Aligned_cols=258 Identities=15% Similarity=0.048 Sum_probs=169.8
Q ss_pred CCeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EE-EecCCcEEEEEeccCceeec
Q 019384 20 DGISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FS-ASADHTVRRLVFSHGKEDIL 96 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s-~s~D~~i~~w~~~~~~~~~~ 96 (342)
..+..++|+|+++.+ ++++.|++|++||..+++....+.....+..++|++++.. +. ++.|+.+++||+.+.+....
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 457789999999876 5677899999999988766554433344567888877664 33 45688999999987653322
Q ss_pred ccCCcceeEEEEeCCCCEEEEeeCCC-cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE-EcCCeEEEEeCC
Q 019384 97 GKHDAPVRCIEYSYAAGQVITGSWDK-SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA-TAGRHVNVYDLR 174 (342)
Q Consensus 97 ~~h~~~V~~~~~~~~~~~l~sgs~D~-~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~-s~d~~v~iwd~~ 174 (342)
..+...+.+++|+|+++.+++++.++ .+.+||.++.... .... .........++.++..++++ ..++.|++||+.
T Consensus 111 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~--~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 111 IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV--DNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE--EEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence 22334568899999999999888775 4677897653221 1111 11222334566677766544 458899999998
Q ss_pred CCCCccccccc--c---cceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384 175 NMSQPEQRRES--S---LKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248 (342)
Q Consensus 175 ~~~~~~~~~~~--~---~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 248 (342)
+.+........ . .......++++|+++.++++. .++. +.+||..+...... +. + ...+.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~--i~v~d~~~~~~~~~--~~-~---------~~~~~~ 253 (300)
T TIGR03866 188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR--VAVVDAKTYEVLDY--LL-V---------GQRVWQ 253 (300)
T ss_pred cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe--EEEEECCCCcEEEE--EE-e---------CCCcce
Confidence 76432111100 0 011234577899998765543 3333 56788854321111 11 1 114778
Q ss_pred EEEcCCCCeEEEe-cCCCeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384 249 IAFHPIYGTFATG-GCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 249 v~~sp~~~~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp 295 (342)
++|+|+|++|+++ +.+++|++||.++++.+..++.. ...+.++|+|
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9999999999876 56999999999999988877643 5569999876
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-21 Score=169.40 Aligned_cols=260 Identities=17% Similarity=0.172 Sum_probs=182.9
Q ss_pred eEEEE-eCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEe-cCCcEEEEEeccCce-eecccCCcceeEEEE
Q 019384 33 HLLVS-SWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSAS-ADHTVRRLVFSHGKE-DILGKHDAPVRCIEY 108 (342)
Q Consensus 33 ~l~s~-s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s-~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~ 108 (342)
+++++ ..--.+-+|.+.... ......-.++|.++.-++.+.++.|| -.+.+.+|.+.++.. ..+.+|-..|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 55554 344567778775432 22233456789999988988887776 899999999999984 456889999999999
Q ss_pred eCCCCEEEEeeCCCcEEEEcCCC-------CCCcceeeeeecCCCCcEEEEecc----CCeEEEEEcCCeEEEEeCCCCC
Q 019384 109 SYAAGQVITGSWDKSLKCWDPRG-------ASGQERTLVGTYPQPERVYSLSLV----GNRLVVATAGRHVNVYDLRNMS 177 (342)
Q Consensus 109 ~~~~~~l~sgs~D~~I~iWd~~~-------~~~~~~~~~~~~~~~~~v~~~s~~----~~~~~~~s~d~~v~iwd~~~~~ 177 (342)
+.|+..|+|||.||.|.+|.+-. ....+...+. .|.-.|..+-.. ..++++++.|.++|+||+..+.
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~--~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS--DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec--cCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 99999999999999999997531 1111111111 234445555443 1379999999999999998764
Q ss_pred CcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc----ccceeeeEEecCCCCceee--eeeEEEE
Q 019384 178 QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA----KKYAFKCHRKSEAGRDIVY--PVNAIAF 251 (342)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~----~~~~~~~h~~~~~~~~~~~--~v~~v~~ 251 (342)
.. ....++..+.+++..|-...+.+|+.+|.+.+..+........ +.+.... .+.....++.+ +|+|++.
T Consensus 210 LL---lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~-t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 210 LL---LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEEN-TQINVLVGHENESAITCLAI 285 (476)
T ss_pred ee---EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccc-ceeeeeccccCCcceeEEEE
Confidence 32 2223455678999999999999999999876533222110000 1110000 00001123333 8999999
Q ss_pred cCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC
Q 019384 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR 298 (342)
Q Consensus 252 sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~ 298 (342)
+-||..|++|+.||.|.|||+.+.++++++....++|+-+.+.|=-+
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 99999999999999999999999999998887889999999977544
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.3e-20 Score=156.62 Aligned_cols=286 Identities=13% Similarity=0.123 Sum_probs=198.3
Q ss_pred CCCccCCCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCce------e----------eeeeecCCceEEEEEeC-
Q 019384 9 TSGRELGNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANV------L----------RGEFMHGGPVLDCCFHD- 70 (342)
Q Consensus 9 ~~~~~~~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~------~----------~~~~~h~~~V~~~~~~~- 70 (342)
++++..-.+|.++|++|...+ +|++++||+.||.|-|||+++.. + ....+|+-.|.++.|.|
T Consensus 33 n~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 33 NNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred cCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 445555678999999999998 78999999999999999986421 1 11235777899999864
Q ss_pred -CCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCC---CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC
Q 019384 71 -DSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYA---AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP 146 (342)
Q Consensus 71 -~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~ 146 (342)
.+-+.++|.|.++++||..+-++..--.-.+.|++-+++|- ..+||+|..|-.|++-|+.++.. ...+.. +.
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~--sH~LsG--Hr 188 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF--SHTLSG--HR 188 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc--eeeecc--cc
Confidence 33445889999999999988775433334566777778773 35788899999999999987543 223333 34
Q ss_pred CcEEEEeccCC---eEEEEEcCCeEEEEeCCCCCC-------------cccccccccceeeEEEEEeeCCceEEEEccCC
Q 019384 147 ERVYSLSLVGN---RLVVATAGRHVNVYDLRNMSQ-------------PEQRRESSLKYQTRCVRCYPNGTGYALSSVEG 210 (342)
Q Consensus 147 ~~v~~~s~~~~---~~~~~s~d~~v~iwd~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 210 (342)
..|.++++++. .++++++|+.||+||+|..+- +..+...++...++.+++..++..+++...|.
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 55666666553 578999999999999986421 11111233445678899999999999998888
Q ss_pred eEEEEEeechhhhh-cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceE
Q 019384 211 RVAMEFFDLSEASQ-AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA 289 (342)
Q Consensus 211 ~~~i~~~d~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~ 289 (342)
+++ +|+...... .+.+.-..|++......+ |. +.+...++---.|+++.++.+-.+..++.+..|-..|.
T Consensus 269 r~r--~wn~~~G~ntl~~~g~~~~n~~~~~~~~---~~----~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~ 339 (397)
T KOG4283|consen 269 RIR--VWNMESGRNTLREFGPIIHNQTTSFAVH---IQ----SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN 339 (397)
T ss_pred ceE--EeecccCcccccccccccccccccceEE---Ee----ecccceEEEEecCCeEEEEEccCceEEEeeecccceee
Confidence 765 588654332 223333334332211111 22 22333333334568899999888888988999988999
Q ss_pred EEEECCCCCEEEEEEecc
Q 019384 290 ALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 290 ~v~~spdg~~las~s~~~ 307 (342)
|.+|-||=+..-+++.+.
T Consensus 340 c~~~~~~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 340 CAAYRPDFEQCFTGDMNG 357 (397)
T ss_pred EEeecCchhhhhccccCC
Confidence 999999988777777654
No 118
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.6e-22 Score=183.08 Aligned_cols=233 Identities=21% Similarity=0.290 Sum_probs=180.3
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-ee
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-ED 94 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-~~ 94 (342)
|+..|.++..-..++.+++|+.|..+-||.+.... +..+.+|..+|.++.|..+..+ .+|+.||+|++||++..+ .+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr 106 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR 106 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh
Confidence 57788888887778899999999999999987654 3445789999999999865554 578899999999998776 56
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~ 174 (342)
.+.+|...+.+++|+|-+.++++||.|.-+++||.+...+ ......+.....+..|+++|..++.++.|.++++||+.
T Consensus 107 tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc--~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 107 TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC--SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred hhhccccCcceeeeccceEEeccccccccceehhhhccCc--eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence 8899999999999999999999999999999999873222 12222222233445566666667777777777777765
Q ss_pred CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384 175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI 254 (342)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~ 254 (342)
.++.. ..+..|. +.+.++-|||.
T Consensus 185 agk~~------------------------------------------------~ef~~~e---------~~v~sle~hp~ 207 (825)
T KOG0267|consen 185 AGKLS------------------------------------------------KEFKSHE---------GKVQSLEFHPL 207 (825)
T ss_pred ccccc------------------------------------------------ccccccc---------ccccccccCch
Confidence 43210 0111221 14667779998
Q ss_pred CCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecccc
Q 019384 255 YGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFE 309 (342)
Q Consensus 255 ~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~ 309 (342)
.-.+++||.|++|++||+++...+.........|.+++|+|||+.+++|...-..
T Consensus 208 e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 208 EVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred hhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 8889999999999999999988888777778899999999999999999875444
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=1.7e-20 Score=171.45 Aligned_cols=234 Identities=16% Similarity=0.157 Sum_probs=172.0
Q ss_pred cCCCCCCCCeEE-EEEcC-CCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEec
Q 019384 13 ELGNPPSDGISN-LRFSN-HSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFS 89 (342)
Q Consensus 13 ~~~~~~~~~V~~-l~fs~-~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~ 89 (342)
+....|.+.|.. ++|.+ ++-+|++|+.|++|.||...+.. +..+.+|++.|.++.-..++.++++|.|.++++|-..
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~ 130 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG 130 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch
Confidence 334567777877 88885 66679999999999999998765 4456789999999987777779999999999999765
Q ss_pred cCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEEEcCCeE
Q 019384 90 HGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVATAGRHV 168 (342)
Q Consensus 90 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s~d~~v 168 (342)
.-. ..+.+|+..|++++.-|++ .++|||.|++||+|.-.+ . . ..+.. |...|..+..-+ ..|++|+.||.|
T Consensus 131 ~l~-~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~-l-~tf~g--HtD~VRgL~vl~~~~flScsNDg~I 202 (745)
T KOG0301|consen 131 ELV-YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--L-L-KTFSG--HTDCVRGLAVLDDSHFLSCSNDGSI 202 (745)
T ss_pred hhh-cccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc--h-h-hhhcc--chhheeeeEEecCCCeEeecCCceE
Confidence 432 2378999999999999977 899999999999997421 1 1 12222 445566676644 489999999999
Q ss_pred EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384 169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248 (342)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 248 (342)
++|++.. .... ....+...+.+++...+++.+++++.|++++| |+..+..+... |+. ..|.+
T Consensus 203 r~w~~~g-e~l~--~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlri--W~~~e~~q~I~-----lPt--------tsiWs 264 (745)
T KOG0301|consen 203 RLWDLDG-EVLL--EMHGHTNFVYSISMALSDGLIVSTGEDRTLRI--WKKDECVQVIT-----LPT--------TSIWS 264 (745)
T ss_pred EEEeccC-ceee--eeeccceEEEEEEecCCCCeEEEecCCceEEE--eecCceEEEEe-----cCc--------cceEE
Confidence 9999943 2322 22334445667776677788999999998755 77643222211 111 14777
Q ss_pred EEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 249 IAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 249 v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
+.+=++|. +++|+.||.||||..+
T Consensus 265 a~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 265 AKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEeeCCC-EEEeccCceEEEEEec
Confidence 77777665 7788899999999755
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=3.4e-19 Score=157.73 Aligned_cols=257 Identities=16% Similarity=0.234 Sum_probs=181.2
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce--eec
Q 019384 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE--DIL 96 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~--~~~ 96 (342)
.-|.+++|.++|+. +||..+|+|.||+..+.++ +...+|.+.|.+++...++.+++|+.|..|..||-.-.+. ..+
T Consensus 247 k~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~el 325 (626)
T KOG2106|consen 247 KFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETEL 325 (626)
T ss_pred eEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccC
Confidence 68999999999865 5999999999999976553 3445899999999999999999999999999999433332 234
Q ss_pred ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCC
Q 019384 97 GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 97 ~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~ 174 (342)
....+.|+.++=.. ++ |+.|..-+.|--=.++.+.. . .... +......+.. +.+.+++++.|+.+++|+-
T Consensus 326 Pe~~G~iRtv~e~~-~d-i~vGTtrN~iL~Gt~~~~f~--~-~v~g--h~delwgla~hps~~q~~T~gqdk~v~lW~~- 397 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGK-GD-ILVGTTRNFILQGTLENGFT--L-TVQG--HGDELWGLATHPSKNQLLTCGQDKHVRLWND- 397 (626)
T ss_pred chhcCCeeEEecCC-Cc-EEEeeccceEEEeeecCCce--E-EEEe--cccceeeEEcCCChhheeeccCcceEEEccC-
Confidence 44556788876443 22 77777666665444443322 1 1222 2233444544 4568999999999999992
Q ss_pred CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384 175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI 254 (342)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~ 254 (342)
.+....+ .+.....|+.|+|.| .++++...|.- .++|.... ..+..|.. ..++++|+|+|+
T Consensus 398 -~k~~wt~---~~~d~~~~~~fhpsg-~va~Gt~~G~w--~V~d~e~~-----~lv~~~~d-------~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 398 -HKLEWTK---IIEDPAECADFHPSG-VVAVGTATGRW--FVLDTETQ-----DLVTIHTD-------NEQLSVVRYSPD 458 (626)
T ss_pred -CceeEEE---EecCceeEeeccCcc-eEEEeeccceE--EEEecccc-----eeEEEEec-------CCceEEEEEcCC
Confidence 1111111 233456789999999 88999888864 34666431 11233332 137999999999
Q ss_pred CCeEEEecCCCeEEEEeCCC-cee---eeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 255 YGTFATGGCDGFVNVWDGNN-KKR---LYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 255 ~~~l~sgs~Dg~I~iWd~~~-~~~---~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
|.+||.|+.|+.|+||-+.. +.. +....+ ++|..+.||+|+++|.+-|.+
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCc
Confidence 99999999999999998764 322 233334 799999999999999987764
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=6.7e-19 Score=155.86 Aligned_cols=273 Identities=15% Similarity=0.158 Sum_probs=194.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-----cCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-----h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~ 93 (342)
.+.|....|.|-...|+....-+.+.+|+..++.+....+ .+.-|.|++|.+++.+++|-.+|.|.+|+..+.+.
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI 279 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE
Confidence 3577889999977666666677889999998765433221 23679999999999999999999999999866552
Q ss_pred -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384 94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172 (342)
Q Consensus 94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd 172 (342)
+....|.+.|.+++.-.+| .|+||+.|+.|..||-. -.+.....+ .+....+..+......|++++..+.|..=.
T Consensus 280 ~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~-y~k~r~~el--Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 280 SKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDN-YRKLRETEL--PEQFGPIRTVAEGKGDILVGTTRNFILQGT 355 (626)
T ss_pred EeEeeecCCceEEEEEecCc-cEeecCccceEEecccc-ccccccccC--chhcCCeeEEecCCCcEEEeeccceEEEee
Confidence 2233899999999998877 46779999999999932 111111111 112233444555433477788777666555
Q ss_pred CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384 173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH 252 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 252 (342)
+.+.-.. ...........++.+|+...+++++.|+.+.+ |+- ....|... ...++.|+.|+
T Consensus 356 ~~~~f~~---~v~gh~delwgla~hps~~q~~T~gqdk~v~l--W~~----~k~~wt~~----------~~d~~~~~~fh 416 (626)
T KOG2106|consen 356 LENGFTL---TVQGHGDELWGLATHPSKNQLLTCGQDKHVRL--WND----HKLEWTKI----------IEDPAECADFH 416 (626)
T ss_pred ecCCceE---EEEecccceeeEEcCCChhheeeccCcceEEE--ccC----CceeEEEE----------ecCceeEeecc
Confidence 5543221 11122234567888999999999999998765 872 12222211 12368899999
Q ss_pred CCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384 253 PIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE 327 (342)
Q Consensus 253 p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
|.| .+|.|...|.-.+.|.++...++.... ..++.+|+|||||.+||+||-+. .|.+|.+++
T Consensus 417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~-----------~iyiy~Vs~ 478 (626)
T KOG2106|consen 417 PSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN-----------HIYIYRVSA 478 (626)
T ss_pred Ccc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCC-----------eEEEEEECC
Confidence 999 999999999999999999777665555 78999999999999999999765 466666554
No 122
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=3.7e-20 Score=177.05 Aligned_cols=244 Identities=18% Similarity=0.191 Sum_probs=170.7
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC----------c---------eeeeeeecCCceEEEEEeCCCCe-E
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA----------N---------VLRGEFMHGGPVLDCCFHDDSSG-F 75 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~----------~---------~~~~~~~h~~~V~~~~~~~~~~~-~ 75 (342)
..|...|+|++|++||.+||+||.|+.|.||+... + ......+|.+.|.+++|+|++.+ +
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 57889999999999999999999999999999762 0 12334579999999999987765 6
Q ss_pred EEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC---CCCc--E
Q 019384 76 SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP---QPER--V 149 (342)
Q Consensus 76 s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~---~~~~--v 149 (342)
++|.|++|.+|+..+.+ ...+.+|...|..+.|.|-|++|+|-+.|++|++|.+.. .+....+-..++ ..-. .
T Consensus 146 S~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred EecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeee
Confidence 99999999999988775 457899999999999999999999999999999999643 221111111111 1111 2
Q ss_pred EEEeccCCeEEEEEcC----CeEEEEeCCCCCCcccccccccceeeEEEEEeeC-----Cc------------eEEEEcc
Q 019384 150 YSLSLVGNRLVVATAG----RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN-----GT------------GYALSSV 208 (342)
Q Consensus 150 ~~~s~~~~~~~~~s~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~------------~~~~~s~ 208 (342)
.+++++|++|++..+= .++.|.+-.+-+... ....+...++++.|.|. .+ .+++|+.
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~--~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDK--DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeee--eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 3456667777765332 246665533221111 11223345677777641 11 4678888
Q ss_pred CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384 209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~ 274 (342)
|+.+.| |...... + .+..|.-.. .+|..++|+|||-.|..||.||+|.+...+.
T Consensus 303 DrSlSV--W~T~~~R-P---l~vi~~lf~------~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 303 DRSLSV--WNTALPR-P---LFVIHNLFN------KSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CccEEE--EecCCCC-c---hhhhhhhhc------CceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 888765 7763221 1 122232211 2689999999999999999999999998763
No 123
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=3.7e-21 Score=163.77 Aligned_cols=226 Identities=19% Similarity=0.201 Sum_probs=166.2
Q ss_pred eeecCCceEEEEEeCCC--CeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384 56 EFMHGGPVLDCCFHDDS--SGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132 (342)
Q Consensus 56 ~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~ 132 (342)
+.+|.++|.+++=.|.. .+++|+.||.|++|++.+..+ ..+..|.+.|+.|++.. ..++|++.|++||.|..+..
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence 34799999999987664 468999999999999999874 57889999999999976 67999999999999987642
Q ss_pred CCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEccC
Q 019384 133 SGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSSVE 209 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~ 209 (342)
. ...+.....+..++.. .+.++++ +..|.|||.... .|.+...... ..+.++++.|.-.. ++++..|
T Consensus 140 --p----~~tilg~s~~~gIdh~~~~~~FaTc--Ge~i~IWD~~R~-~Pv~smswG~-Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 140 --P----LHTILGKSVYLGIDHHRKNSVFATC--GEQIDIWDEQRD-NPVSSMSWGA-DSISSVKFNPVETSILASCASD 209 (433)
T ss_pred --c----ceeeecccccccccccccccccccc--CceeeecccccC-CccceeecCC-CceeEEecCCCcchheeeeccC
Confidence 1 1111112223344443 2344444 446999998654 3333332222 23677888886554 4555577
Q ss_pred CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce-eeeccCCCCcce
Q 019384 210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSI 288 (342)
Q Consensus 210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V 288 (342)
+.+ .+||.++++..++..+.. .-+.++|+|..-.+++|++|..++.+|.+..+ .+..+.+|.+.|
T Consensus 210 rsI--vLyD~R~~~Pl~KVi~~m------------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV 275 (433)
T KOG0268|consen 210 RSI--VLYDLRQASPLKKVILTM------------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV 275 (433)
T ss_pred Cce--EEEecccCCccceeeeec------------cccceecCccccceeeccccccceehhhhhhcccchhhcccceeE
Confidence 765 569999877665544332 35789999977788999999999999998754 577889999999
Q ss_pred EEEEECCCCCEEEEEEecc
Q 019384 289 AALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 289 ~~v~~spdg~~las~s~~~ 307 (342)
.+++|||.|+-+++||.+.
T Consensus 276 ~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred EEeccCCCcchhccccccc
Confidence 9999999999999999754
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.7e-21 Score=176.48 Aligned_cols=259 Identities=17% Similarity=0.139 Sum_probs=181.9
Q ss_pred cCCCCCCCccCCCCC-------CCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCC---ceee-eeeecCCceEEEEEe--
Q 019384 4 VHPPPTSGRELGNPP-------SDGISNLRFSN-HSDHLLVSSWDKSVRLYDASA---NVLR-GEFMHGGPVLDCCFH-- 69 (342)
Q Consensus 4 ~~~~~~~~~~~~~~~-------~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~---~~~~-~~~~h~~~V~~~~~~-- 69 (342)
|.+||....+-++-. .-.+..|.|.. +.++|||++..|.|-+||+.. .+++ .+..|+-.+.+++|+
T Consensus 65 yai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t 144 (839)
T KOG0269|consen 65 YAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST 144 (839)
T ss_pred EeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC
Confidence 345555555544322 11344677775 468899999999999999976 3333 334699999999997
Q ss_pred CCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC
Q 019384 70 DDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE 147 (342)
Q Consensus 70 ~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~ 147 (342)
....+++||.|++|+.||++..+ ..++.+-...|+.+.|+|. +..|+++...|.+++||+|...... ..+..| ..
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-~k~~AH--~G 221 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-KKLTAH--NG 221 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-HHhhcc--cC
Confidence 34567899999999999998776 4566677788999999994 5789999999999999998654322 223333 44
Q ss_pred cEEEEeccC--CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEccCCeEEEEEeechhhhh
Q 019384 148 RVYSLSLVG--NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSEASQ 224 (342)
Q Consensus 148 ~v~~~s~~~--~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~~~~ 224 (342)
.+.++++++ ..|++|+.|+.|+|||+.+.... ..........+.+|+|-|..++ +++++.-++-.|++||++....
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI 300 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI 300 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCcc-ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence 566666654 58999999999999999764322 1112223345788999998664 6777776666788999975433
Q ss_pred cccceeeeEEecCCCCceeeeeeEEEEcC-CCCeEEEecCCCeEEEEeCCCce
Q 019384 225 AKKYAFKCHRKSEAGRDIVYPVNAIAFHP-IYGTFATGGCDGFVNVWDGNNKK 276 (342)
Q Consensus 225 ~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-~~~~l~sgs~Dg~I~iWd~~~~~ 276 (342)
+. ..+..|.. .+..++|-. |...|.+++.||+|..--.++..
T Consensus 301 P~-~t~~eH~~---------~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 301 PY-ATFLEHTD---------SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cc-eeeeccCc---------cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 32 23444543 366778743 45678999999998776665543
No 125
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.5e-21 Score=171.09 Aligned_cols=253 Identities=19% Similarity=0.237 Sum_probs=172.4
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc---------eeeeeeecCCceEEEEEeCC-CCeEEEecCCcEEEE
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN---------VLRGEFMHGGPVLDCCFHDD-SSGFSASADHTVRRL 86 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~---------~~~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w 86 (342)
-|-+.|++++|.+-...|++++.||++++|+++.. .+.+..+|.++|.|++++.. ...++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 46789999999999999999999999999999321 25667799999999999854 456899999999999
Q ss_pred EeccCc-----------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc
Q 019384 87 VFSHGK-----------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV 155 (342)
Q Consensus 87 ~~~~~~-----------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~ 155 (342)
.+.... ...+.||++.|+.+++++...+|+++|.|||+++|+...... ..+..........++++.
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc---cccCCccccCCcceEeec
Confidence 664211 135789999999999999888999999999999999753322 112222222223344443
Q ss_pred CCeEEEEEcCCeEEEEeCCCCCCccc--ccc-cc-----cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc
Q 019384 156 GNRLVVATAGRHVNVYDLRNMSQPEQ--RRE-SS-----LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK 227 (342)
Q Consensus 156 ~~~~~~~s~d~~v~iwd~~~~~~~~~--~~~-~~-----~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~ 227 (342)
...++...++...+.+++.+...... ... .. ...+++.+..+|.....+++-.+..+ +++|..... ..
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I--r~~dn~~~~--~l 524 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI--RFFDNKTGK--IL 524 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCce--ecccccccc--cc
Confidence 33322223333333333322211100 000 00 11235667788888777777777765 568764432 23
Q ss_pred ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCC
Q 019384 228 YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP 285 (342)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~ 285 (342)
.....|.. .++++++.|+|.+|++|+.|+.+++|......++.....|+
T Consensus 525 ~s~~a~~~---------svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 525 HSMVAHKD---------SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred hheeeccc---------eecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 33444443 58999999999999999999999999988777776655554
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=1.8e-19 Score=167.84 Aligned_cols=274 Identities=16% Similarity=0.187 Sum_probs=196.8
Q ss_pred CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC--c--e-eeeeeecCCceEEEEEe-CCC-CeEEEecCCcEEEEE
Q 019384 15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA--N--V-LRGEFMHGGPVLDCCFH-DDS-SGFSASADHTVRRLV 87 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~--~--~-~~~~~~h~~~V~~~~~~-~~~-~~~s~s~D~~i~~w~ 87 (342)
.|.|..+|..+.|-+....|+|++.|+.+++|=.++ + + ++.-.+|..+..++.|. ..+ .+++++.|.+.+.++
T Consensus 284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs 363 (910)
T KOG1539|consen 284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFS 363 (910)
T ss_pred eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhh
Confidence 367889999999999999999999999999887653 2 2 33445899999999996 333 456899998776444
Q ss_pred ecc-----------------------------------------------------------------Cce-eecccCC-
Q 019384 88 FSH-----------------------------------------------------------------GKE-DILGKHD- 100 (342)
Q Consensus 88 ~~~-----------------------------------------------------------------~~~-~~~~~h~- 100 (342)
+.. ... ...-.+.
T Consensus 364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~ 443 (910)
T KOG1539|consen 364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR 443 (910)
T ss_pred hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence 311 000 0000122
Q ss_pred -----cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee-ecCCCCcEEEEeccC--CeEEEEEcCCeEEEEe
Q 019384 101 -----APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG-TYPQPERVYSLSLVG--NRLVVATAGRHVNVYD 172 (342)
Q Consensus 101 -----~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~v~~~s~~~--~~~~~~s~d~~v~iwd 172 (342)
..+++++.++-|+..+.|+.-|+|-+++++++- .+..++ ...+...+..++.++ ..+++++++|.+++||
T Consensus 444 ~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi--~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 444 FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI--HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD 521 (910)
T ss_pred ccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe--eecccccCccccCceeEEEecCCCceEEEccCcceEEEEe
Confidence 457888888889888999999999999998642 223332 223455677777764 4689999999999999
Q ss_pred CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384 173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH 252 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 252 (342)
..+.. .. ....+...++++..+.....++++..+-.+ .++|..+....+ .+.+|.. .|++++||
T Consensus 522 f~~k~-l~--~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I--~vvD~~t~kvvR--~f~gh~n---------ritd~~FS 585 (910)
T KOG1539|consen 522 FKKKV-LK--KSLRLGSSITGIVYHRVSDLLAIALDDFSI--RVVDVVTRKVVR--EFWGHGN---------RITDMTFS 585 (910)
T ss_pred cCCcc-ee--eeeccCCCcceeeeeehhhhhhhhcCceeE--EEEEchhhhhhH--Hhhcccc---------ceeeeEeC
Confidence 97653 11 111233345666666666666666666554 568885443333 3455543 59999999
Q ss_pred CCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 253 PIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 253 p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
|||++|++++.|++||+||+-++.++-.+. -..++.++.|||.|.+||+...+.
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecC
Confidence 999999999999999999999988876543 457899999999999999998753
No 127
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=2.8e-20 Score=162.59 Aligned_cols=212 Identities=19% Similarity=0.259 Sum_probs=151.2
Q ss_pred CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCce--------eeeeeecCCceEEEEEe--CCCCeEEEecCCcEE
Q 019384 16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANV--------LRGEFMHGGPVLDCCFH--DDSSGFSASADHTVR 84 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~--------~~~~~~h~~~V~~~~~~--~~~~~~s~s~D~~i~ 84 (342)
.+|.+.=+.|+|++. .-+|++++.|++|++||+.... .....+|+..|..++|+ ....+.+++.|+.+.
T Consensus 174 ~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~ 253 (422)
T KOG0264|consen 174 KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM 253 (422)
T ss_pred EeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence 466665688999995 4578999999999999986421 12234799999999997 344556999999999
Q ss_pred EEEeccC--c-eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC---
Q 019384 85 RLVFSHG--K-EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--- 157 (342)
Q Consensus 85 ~w~~~~~--~-~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--- 157 (342)
+||.++. + .....+|+..|+|++|+|-+ ..|||||.|++|++||+|+-.... ..+. .+...++.+.++++
T Consensus 254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l-h~~e--~H~dev~~V~WSPh~et 330 (422)
T KOG0264|consen 254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL-HTFE--GHEDEVFQVEWSPHNET 330 (422)
T ss_pred EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc-eecc--CCCcceEEEEeCCCCCc
Confidence 9999863 2 23457899999999999955 567999999999999999754321 1122 24456777766654
Q ss_pred eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecC
Q 019384 158 RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSE 237 (342)
Q Consensus 158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~ 237 (342)
.+++++.|+++.+||+..-..... ++. ..+ ......+...+|..
T Consensus 331 vLASSg~D~rl~vWDls~ig~eq~----------------~ed------a~d------------gppEllF~HgGH~~-- 374 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLSRIGEEQS----------------PED------AED------------GPPELLFIHGGHTA-- 374 (422)
T ss_pred eeEecccCCcEEEEeccccccccC----------------hhh------hcc------------CCcceeEEecCccc--
Confidence 688889999999999965311100 000 000 11112233444543
Q ss_pred CCCceeeeeeEEEEcCCCCe-EEEecCCCeEEEEeCC
Q 019384 238 AGRDIVYPVNAIAFHPIYGT-FATGGCDGFVNVWDGN 273 (342)
Q Consensus 238 ~~~~~~~~v~~v~~sp~~~~-l~sgs~Dg~I~iWd~~ 273 (342)
.|+.+.|+|+..+ ++|.++|+.+.||+..
T Consensus 375 -------kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 375 -------KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -------ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 4889999999875 6889999999999865
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.2e-19 Score=167.05 Aligned_cols=249 Identities=19% Similarity=0.296 Sum_probs=187.1
Q ss_pred eecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccC-c-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC
Q 019384 57 FMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHG-K-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS 133 (342)
Q Consensus 57 ~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~-~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~ 133 (342)
+.|.++-+.++|.+++.. ++|+.|+.|++|..... + ...+.-++..|.+++.. ..+|++|+.+++|.++.+.+..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 468899999999877765 58999999999987655 2 23444488899999864 4689999999999999986543
Q ss_pred CcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384 134 GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA 213 (342)
Q Consensus 134 ~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~ 213 (342)
....+..+..+.++++++-+|+.++.|+.|-.|++.++.+..+. +....+..++.++.++|++..+++.+.+|.+.
T Consensus 88 --~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 88 --EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred --ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh--eeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 23345555667778888888899999999999999998876433 22335667899999999999999999999875
Q ss_pred EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC--CCcceEEE
Q 019384 214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK--YPTSIAAL 291 (342)
Q Consensus 214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~--~~~~V~~v 291 (342)
+||+.+...... +.+-.+... ......+..++|+|+|..|+.-..|+.|++|+..+......+.. +...+.++
T Consensus 164 --iw~~~~~~~~~t--l~~v~k~n~-~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 164 --IWDLQDGILSKT--LTGVDKDNE-FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred --EEEcccchhhhh--cccCCcccc-ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence 588864432221 111111111 11123567789999999999999999999999998877666542 33458999
Q ss_pred EECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384 292 SFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE 327 (342)
Q Consensus 292 ~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
+|||.|+|||+++.++ .|.||+++-
T Consensus 239 ~wsPnG~YiAAs~~~g-----------~I~vWnv~t 263 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDG-----------QILVWNVDT 263 (933)
T ss_pred EEcCCCcEEeeeccCC-----------cEEEEeccc
Confidence 9999999999988765 577777763
No 129
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.6e-20 Score=170.53 Aligned_cols=241 Identities=17% Similarity=0.228 Sum_probs=178.4
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEE-eCCCC-eEEEecCCcEEEEEecc
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCF-HDDSS-GFSASADHTVRRLVFSH 90 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~-~~~~~-~~s~s~D~~i~~w~~~~ 90 (342)
+-|+++|+.+..-.+++.|+|+|.|-||++|+...+. ......|.+-|.|+++ ..+.. +++||-|+.|.+||+.+
T Consensus 70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~ 149 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINT 149 (735)
T ss_pred hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccC
Confidence 5788999999999999999999999999999986542 3344569999999999 45544 46999999999999997
Q ss_pred Ccee------------ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384 91 GKED------------ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158 (342)
Q Consensus 91 ~~~~------------~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~ 158 (342)
+... ...++...|+++|.++.+..|++|+.++-|++||.++... .+.+..|....+++-++-+|.+
T Consensus 150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k--imkLrGHTdNVr~ll~~dDGt~ 227 (735)
T KOG0308|consen 150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK--IMKLRGHTDNVRVLLVNDDGTR 227 (735)
T ss_pred cchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc--eeeeeccccceEEEEEcCCCCe
Confidence 7321 2238899999999999999999999999999999987543 3445555444556666667889
Q ss_pred EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA 238 (342)
Q Consensus 159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~ 238 (342)
+++++.|++|++||+......... . .++..+..+...|+-..+.+|+.++.+ +.-|++... ...+-+.++
T Consensus 228 ~ls~sSDgtIrlWdLgqQrCl~T~-~-vH~e~VWaL~~~~sf~~vYsG~rd~~i--~~Tdl~n~~---~~tlick~d--- 297 (735)
T KOG0308|consen 228 LLSASSDGTIRLWDLGQQRCLATY-I-VHKEGVWALQSSPSFTHVYSGGRDGNI--YRTDLRNPA---KSTLICKED--- 297 (735)
T ss_pred EeecCCCceEEeeeccccceeeeE-E-eccCceEEEeeCCCcceEEecCCCCcE--EecccCCch---hheEeecCC---
Confidence 999999999999999875443322 1 222236667777887888888888865 346665421 111112111
Q ss_pred CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
.||..+..+...+-+.++..|+.|+-|..+
T Consensus 298 -----aPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 298 -----APVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred -----CchhhhhhccccCCceeeeccccceecCCc
Confidence 256666666555556888899999999755
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.9e-20 Score=170.97 Aligned_cols=271 Identities=17% Similarity=0.286 Sum_probs=188.5
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc----eeeeeeec----CCceEEEEEe--CCCCeEEEecCCcEEEEEec
Q 019384 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VLRGEFMH----GGPVLDCCFH--DDSSGFSASADHTVRRLVFS 89 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~----~~~~~~~h----~~~V~~~~~~--~~~~~~s~s~D~~i~~w~~~ 89 (342)
....+|+-.++-..++.++.. .++||-+... ++..-+.- .-.+..|.|. .+..+++|+..|.|-+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 455677777887777766544 7888887432 11111111 1123456675 44556899999999999997
Q ss_pred cC--c--eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc-CCeEEEEE
Q 019384 90 HG--K--EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV-GNRLVVAT 163 (342)
Q Consensus 90 ~~--~--~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~-~~~~~~~s 163 (342)
.. + ...+..|+..|++++|++.. .+|+|||.||+||+||++..... .....-....+-+.|++. ++.|+++.
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~--~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK--STFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc--ccccccchhhhceeeccCCCceEEEec
Confidence 73 2 23578899999999999854 67899999999999999864331 112221122334456664 56899999
Q ss_pred cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384 164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV 243 (342)
Q Consensus 164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~ 243 (342)
..|.+++||+|.......+. .++.+.+.|+.|+|++..+++|+-|+.++| ||..+........+ + -.
T Consensus 197 dsG~lqlWDlRqp~r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vki--Wd~t~~~~~~~~tI--n--------Ti 263 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKI--WDMTDSRAKPKHTI--N--------TI 263 (839)
T ss_pred CCceEEEeeccCchhHHHHh-hcccCceEEEeecCCCceeeecCCCccEEE--EeccCCCccceeEE--e--------ec
Confidence 99999999999876554433 356678899999999999999999998766 55532211111111 1 12
Q ss_pred eeeeEEEEcCCCC-eEEEec--CCCeEEEEeCCCce-eeeccCCCCcceEEEEE-CCCCCEEEEEEec
Q 019384 244 YPVNAIAFHPIYG-TFATGG--CDGFVNVWDGNNKK-RLYQYSKYPTSIAALSF-SRDGRLLAVASSY 306 (342)
Q Consensus 244 ~~v~~v~~sp~~~-~l~sgs--~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~-spdg~~las~s~~ 306 (342)
.||..|+|-|... .||+++ .|-.|+|||++..- +-.++..|...+..++| +-|...|.+++.+
T Consensus 264 apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 264 APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCc
Confidence 4799999999866 478776 58899999987543 34678889999999999 4466677777764
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.1e-19 Score=160.07 Aligned_cols=274 Identities=20% Similarity=0.227 Sum_probs=194.1
Q ss_pred CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC--eEEEecCCcEEEEEeccCc
Q 019384 15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS--GFSASADHTVRRLVFSHGK 92 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~--~~s~s~D~~i~~w~~~~~~ 92 (342)
-.+|.+.|.+|+-.|.|..||+|+.||+||||.+.+++++......+.|.+++|.|... ++.++....+.+.+..-+.
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 36899999999999999999999999999999999999888888889999999986543 3455544444333321110
Q ss_pred --------------------------------------eeecccCCcceeEEEEeCCCCEEEEeeCC---CcEEEEcCCC
Q 019384 93 --------------------------------------EDILGKHDAPVRCIEYSYAAGQVITGSWD---KSLKCWDPRG 131 (342)
Q Consensus 93 --------------------------------------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~~I~iWd~~~ 131 (342)
..+...|...|+++.|+.+|++|++...| ..|-|.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 01223578889999999999999987665 4688888754
Q ss_pred CCCcceeeeeecCCCCcEEEEeccC--CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384 132 ASGQERTLVGTYPQPERVYSLSLVG--NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE 209 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~s~~~--~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~ 209 (342)
...+ ..+.. ....+....+.+ .+++++++ ..|++||+..... .+........+..++.+|.|..+++++.+
T Consensus 556 ~~sQ--~PF~k--skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel--vKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 556 RKSQ--SPFRK--SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL--VKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred cccc--Cchhh--cCCceeEEEecCCCceEEEEec-cceEEEehhHHHH--HHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 3221 22211 222334444443 46666665 5799999975321 11111223457788999999999999999
Q ss_pred CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC-------Cc--eeeec
Q 019384 210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN-------NK--KRLYQ 280 (342)
Q Consensus 210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~-------~~--~~~~~ 280 (342)
+.+. +||+.-...+.+ .+..|.+ ++++|+||+.-..+++|+.||++.|+-.. +. ..+..
T Consensus 629 ~k~~--WfDldlsskPyk-~lr~H~~---------avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 629 KKMC--WFDLDLSSKPYK-TLRLHEK---------AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred CeeE--EEEcccCcchhH-Hhhhhhh---------hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 9764 577644332222 2445554 58999999999999999999999999532 22 23567
Q ss_pred cCCCCcc----eEEEEECCCCCEEEEEEecc
Q 019384 281 YSKYPTS----IAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 281 ~~~~~~~----V~~v~~spdg~~las~s~~~ 307 (342)
+.+|... |.++.|.|.--+|.+++.+.
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ 727 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADG 727 (733)
T ss_pred ccCceeecccceEeecccCCCceEEecCCCc
Confidence 8888766 89999999999999988764
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.9e-19 Score=163.29 Aligned_cols=246 Identities=18% Similarity=0.246 Sum_probs=162.9
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee---eeecCCceEEEEEeCCCC--eEEEecCCcEEEEEeccC
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---EFMHGGPVLDCCFHDDSS--GFSASADHTVRRLVFSHG 91 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~---~~~h~~~V~~~~~~~~~~--~~s~s~D~~i~~w~~~~~ 91 (342)
-|-+.|..+.|-|-..+|++++.|.|+|+||+.+.++.+ .++|.+.|.++||.+... +++|+.|+.+.+||+.-.
T Consensus 98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 467899999999966789999999999999999877654 468999999999985443 469999999999998543
Q ss_pred cee--------e--------------------cccCCcceeE---EEEeCCCCEEEEeeC-CCcEEEEcCCCCCCcc-ee
Q 019384 92 KED--------I--------------------LGKHDAPVRC---IEYSYAAGQVITGSW-DKSLKCWDPRGASGQE-RT 138 (342)
Q Consensus 92 ~~~--------~--------------------~~~h~~~V~~---~~~~~~~~~l~sgs~-D~~I~iWd~~~~~~~~-~~ 138 (342)
... . ...|...|.+ +-+..|...|||++. |+.||+||++...... +.
T Consensus 178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e 257 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE 257 (720)
T ss_pred chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccC
Confidence 210 0 0123333444 445568888999887 9999999998643211 11
Q ss_pred eeee--cC-C---CCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCccc-ccccccc-eeeEEEEEeeCCceEEEEcc
Q 019384 139 LVGT--YP-Q---PERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPEQ-RRESSLK-YQTRCVRCYPNGTGYALSSV 208 (342)
Q Consensus 139 ~~~~--~~-~---~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~s~ 208 (342)
..+. +. + ...+++|..+ |.++++...|+.|.+||++....... ....... .....-..+|++.++++++.
T Consensus 258 p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs 337 (720)
T KOG0321|consen 258 PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS 337 (720)
T ss_pred CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC
Confidence 1111 11 1 1234455554 56665555599999999987654211 1111111 11122236799999999999
Q ss_pred CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCC
Q 019384 209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~ 274 (342)
+....+ |.+..... -...+.+|.. .|.+|+|.|.. .-+++|+.|-+++||++.+
T Consensus 338 d~~ayi--w~vs~~e~-~~~~l~Ght~---------eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 338 DEQAYI--WVVSSPEA-PPALLLGHTR---------EVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred Ccceee--eeecCccC-ChhhhhCcce---------EEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 998766 44432221 1122344433 58899988753 2477889999999999864
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=155.32 Aligned_cols=234 Identities=20% Similarity=0.265 Sum_probs=161.5
Q ss_pred CCCCCeEEEEEcCCC--CeEEEEeCCCcEEEEECCCc-----------------eeeeeeecCCceEEEEEeC--CCCeE
Q 019384 17 PPSDGISNLRFSNHS--DHLLVSSWDKSVRLYDASAN-----------------VLRGEFMHGGPVLDCCFHD--DSSGF 75 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~--~~l~s~s~Dgti~vwd~~~~-----------------~~~~~~~h~~~V~~~~~~~--~~~~~ 75 (342)
+|-+.|+-++-++-+ .+.|+=+..|.|+|||+... .+....+|++.-++++|+| .+.++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 455667777666644 45566677899999997421 1334447999999999997 34466
Q ss_pred EEecCCcEEEEEeccCce----eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEE
Q 019384 76 SASADHTVRRLVFSHGKE----DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVY 150 (342)
Q Consensus 76 s~s~D~~i~~w~~~~~~~----~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~ 150 (342)
+|-.-+.|++|-..++.. ..+.+|+..|-.++|+|.. ..|+|||.|++|+|||+|++.+........ +...|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA--h~sDVN 306 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA--HNSDVN 306 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec--cCCcee
Confidence 776677899998888763 3567799999999999954 678999999999999999764433333333 334566
Q ss_pred EEeccCC--eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccc
Q 019384 151 SLSLVGN--RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKY 228 (342)
Q Consensus 151 ~~s~~~~--~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~ 228 (342)
.++++++ .|++|+.||+++|||+|..+.. . . ++
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----~----p------------VA------------------------ 341 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG-----Q----P------------VA------------------------ 341 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCC-----C----c------------ce------------------------
Confidence 6777654 6889999999999999875211 0 0 00
Q ss_pred eeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCc-------------------eeeeccCCCCcce
Q 019384 229 AFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNK-------------------KRLYQYSKYPTSI 288 (342)
Q Consensus 229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~-------------------~~~~~~~~~~~~V 288 (342)
.++.|. .||++|.|+|.. ..|++++.|.+|.|||+... +++...++ +..|
T Consensus 342 ~fk~Hk---------~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~ 411 (440)
T KOG0302|consen 342 TFKYHK---------APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEV 411 (440)
T ss_pred eEEecc---------CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHh
Confidence 012232 279999999974 46888999999999997421 11111111 3468
Q ss_pred EEEEECCCCC-EEEEEEecc
Q 019384 289 AALSFSRDGR-LLAVASSYT 307 (342)
Q Consensus 289 ~~v~~spdg~-~las~s~~~ 307 (342)
..|.|.+.-. +|++.+-++
T Consensus 412 KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 412 KEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred hhheeccCCCCeEEEecccc
Confidence 8999988755 555555444
No 134
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=7.1e-19 Score=147.98 Aligned_cols=293 Identities=17% Similarity=0.252 Sum_probs=198.0
Q ss_pred cccCCCCCCCccCCC----CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-----c---e----eee--eeecCCce
Q 019384 2 TAVHPPPTSGRELGN----PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-----N---V----LRG--EFMHGGPV 63 (342)
Q Consensus 2 ~~~~~~~~~~~~~~~----~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-----~---~----~~~--~~~h~~~V 63 (342)
.|+-+|-..+-+... ++.+..-...|||||.-|++-+.|..+++|++.. . . ... .+.....|
T Consensus 28 ~y~qg~~~l~g~~~~~stt~p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tv 107 (406)
T KOG2919|consen 28 GYVQGPINLGGNVIAFSTTKPLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETV 107 (406)
T ss_pred ceeecceeccCceEEeccCCchhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEE
Confidence 344445444433331 2445566789999999999999999999999732 1 0 011 11234567
Q ss_pred EEEEEe-------CCCCe-EEEecCCcEEEEEeccCceee---cccCCcce---eEEEEeCCCCEEEEeeCCCcEEEEcC
Q 019384 64 LDCCFH-------DDSSG-FSASADHTVRRLVFSHGKEDI---LGKHDAPV---RCIEYSYAAGQVITGSWDKSLKCWDP 129 (342)
Q Consensus 64 ~~~~~~-------~~~~~-~s~s~D~~i~~w~~~~~~~~~---~~~h~~~V---~~~~~~~~~~~l~sgs~D~~I~iWd~ 129 (342)
...+|- |+..+ ++.+.|..|++||.-+++.+. ...|.+.+ .|++|+|||.+|++| ..+.||++|+
T Consensus 108 ydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt 186 (406)
T KOG2919|consen 108 YDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDT 186 (406)
T ss_pred EEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeec
Confidence 888874 23333 466788999999998887542 23455444 489999999999865 5789999998
Q ss_pred -CCCCCcc-eeeee--ecCCCCcEEEEeccC---CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce
Q 019384 130 -RGASGQE-RTLVG--TYPQPERVYSLSLVG---NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG 202 (342)
Q Consensus 130 -~~~~~~~-~~~~~--~~~~~~~v~~~s~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 202 (342)
|.+.... ...+. .......+.++++++ ..++.+++..++-|+.-....... .......-++-+.+.++|+.
T Consensus 187 ~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~--llggh~gGvThL~~~edGn~ 264 (406)
T KOG2919|consen 187 SRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ--LLGGHGGGVTHLQWCEDGNK 264 (406)
T ss_pred cCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee--eecccCCCeeeEEeccCcCe
Confidence 4332211 11111 111223344455543 478899999998888776543222 22234456788999999999
Q ss_pred EEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE--cCCCCeEEEecCCCeEEEEeCCC-ceeee
Q 019384 203 YALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF--HPIYGTFATGGCDGFVNVWDGNN-KKRLY 279 (342)
Q Consensus 203 ~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~--sp~~~~l~sgs~Dg~I~iWd~~~-~~~~~ 279 (342)
+.+++-... .|..||++.. ....+.+..|....+. .|-| .|++++|++|+.||.|++||.++ +..+.
T Consensus 265 lfsGaRk~d-kIl~WDiR~~-~~pv~~L~rhv~~TNQ--------RI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 265 LFSGARKDD-KILCWDIRYS-RDPVYALERHVGDTNQ--------RILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred ecccccCCC-eEEEEeehhc-cchhhhhhhhccCccc--------eEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 998874333 4567999754 3345667777653221 2334 58899999999999999999987 45566
Q ss_pred ccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 280 QYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 280 ~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.+..|...|+.++++|--.++|++|...
T Consensus 335 v~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 335 VTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccccccccccceecCcccceeeeccCce
Confidence 7778888999999999999999998743
No 135
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=7.9e-19 Score=146.42 Aligned_cols=231 Identities=11% Similarity=0.159 Sum_probs=165.3
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC---CeEEEecCCcEEEEEeccCc
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS---SGFSASADHTVRRLVFSHGK 92 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~---~~~s~s~D~~i~~w~~~~~~ 92 (342)
..|...|.+++|+.||..+++|+.|+.+++||+.++.....-.|.++|.+|.|.+.. -+++||.|.+++.||.+...
T Consensus 69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 578899999999999999999999999999999998887788899999999997433 35799999999999998776
Q ss_pred eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172 (342)
Q Consensus 93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd 172 (342)
......--+.+++++.- ...++.+..|+.|.+++++++..+.....-..+...+.+++-.+.+..+.|+-.|.+-+..
T Consensus 149 pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 149 PVATLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQY 226 (347)
T ss_pred eeeeeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEe
Confidence 44333333566766543 3567788899999999997654322111111122334445555667779999999998888
Q ss_pred CCCCCC--cc----cccc---cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384 173 LRNMSQ--PE----QRRE---SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV 243 (342)
Q Consensus 173 ~~~~~~--~~----~~~~---~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~ 243 (342)
+..... .. .+.. ...-+.+++++|+|....+++.+.||+. .+||-...... ...+.|.
T Consensus 227 id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf--~FWDkdar~kL--k~s~~~~--------- 293 (347)
T KOG0647|consen 227 IDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF--SFWDKDARTKL--KTSETHP--------- 293 (347)
T ss_pred cCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE--EEecchhhhhh--hccCcCC---------
Confidence 766421 11 1110 1112457889999999999999999976 47997433222 2222222
Q ss_pred eeeeEEEEcCCCCeEEEe
Q 019384 244 YPVNAIAFHPIYGTFATG 261 (342)
Q Consensus 244 ~~v~~v~~sp~~~~l~sg 261 (342)
.+|.+++|+.+|.++|-+
T Consensus 294 qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 294 QPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CccceeEecCCCCEEEEE
Confidence 389999999999988665
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=5.2e-19 Score=161.84 Aligned_cols=289 Identities=18% Similarity=0.212 Sum_probs=194.9
Q ss_pred CCCCCCeEEEEEcCCCC---eEEEEeCCCcEEEEECCCc-------------------------eee------e-eeecC
Q 019384 16 NPPSDGISNLRFSNHSD---HLLVSSWDKSVRLYDASAN-------------------------VLR------G-EFMHG 60 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~---~l~s~s~Dgti~vwd~~~~-------------------------~~~------~-~~~h~ 60 (342)
++|.++|.+|+|...+. +|||+|.|..||||.+.-. ++. . ..+|.
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe 267 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE 267 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence 68999999999997554 7899999999999997311 001 1 12699
Q ss_pred CceEEEEEeCCC-CeEEEecCCcEEEEEeccCc---e---e--ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC
Q 019384 61 GPVLDCCFHDDS-SGFSASADHTVRRLVFSHGK---E---D--ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131 (342)
Q Consensus 61 ~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~---~---~--~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~ 131 (342)
+-|.++.|+|.+ .++++|+|.++.+|-..... . + -..+.....+.+-|+|++..|++-+.-|..++|....
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 999999999777 67899999999999765542 1 1 1223345688899999999999999999999998332
Q ss_pred CCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCc--ccccccccceeeEEEEEeeCCceEEEEc
Q 019384 132 ASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQP--EQRRESSLKYQTRCVRCYPNGTGYALSS 207 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~s 207 (342)
...-.+..+ ...+...|..+.+ .|+++++++.|.+.|+|--...++. ...+.+-+.+..+|+++-+....++++.
T Consensus 348 ~~~w~~~~~-iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA 426 (764)
T KOG1063|consen 348 KTFWTQEPV-ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA 426 (764)
T ss_pred ccceeeccc-cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence 111011111 1123344555555 5889999999999999865421111 1111233456678888887644455554
Q ss_pred cCCeEEEEEeechhhhh-----------------ccc----------ceee-------eE--------------------
Q 019384 208 VEGRVAMEFFDLSEASQ-----------------AKK----------YAFK-------CH-------------------- 233 (342)
Q Consensus 208 ~~~~~~i~~~d~~~~~~-----------------~~~----------~~~~-------~h-------------------- 233 (342)
.+ ++ ++.|+.....- +.. ..+. .+
T Consensus 427 dE-KV-lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 427 DE-KV-LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cc-ee-eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 43 33 23444211100 000 0000 00
Q ss_pred -----------EecCCCCceeeeeeEEEEcCCCCeEEEecC-----CCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384 234 -----------RKSEAGRDIVYPVNAIAFHPIYGTFATGGC-----DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG 297 (342)
Q Consensus 234 -----------~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-----Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg 297 (342)
++...-.+|.+.|.+++.+|+++++||+.. ---|+||+..+-..++.+.+|.-.|+.|+|||||
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg 584 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG 584 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC
Confidence 000112556688999999999999999853 3369999999888888899999999999999999
Q ss_pred CEEEEEEecc
Q 019384 298 RLLAVASSYT 307 (342)
Q Consensus 298 ~~las~s~~~ 307 (342)
+||++.|.+.
T Consensus 585 ~~LLsvsRDR 594 (764)
T KOG1063|consen 585 RYLLSVSRDR 594 (764)
T ss_pred cEEEEeecCc
Confidence 9999999864
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.6e-20 Score=177.95 Aligned_cols=283 Identities=16% Similarity=0.189 Sum_probs=199.8
Q ss_pred EEEEEcCCCC-eEEE----------EeCCCcEEEEECCC--c----eeeeeeecCCceEEEEEeCC-----CCeEEEecC
Q 019384 23 SNLRFSNHSD-HLLV----------SSWDKSVRLYDASA--N----VLRGEFMHGGPVLDCCFHDD-----SSGFSASAD 80 (342)
Q Consensus 23 ~~l~fs~~~~-~l~s----------~s~Dgti~vwd~~~--~----~~~~~~~h~~~V~~~~~~~~-----~~~~s~s~D 80 (342)
..++|||.+. +||+ -|.+.++.||.+.. . +.+....-....+.+.|.+- +.++.|..|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 3578999886 3332 24566777887642 1 23444445566788999632 235577789
Q ss_pred CcEEEEEeccC---c-e---eecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384 81 HTVRRLVFSHG---K-E---DILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL 152 (342)
Q Consensus 81 ~~i~~w~~~~~---~-~---~~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~ 152 (342)
|.|.+|+...- . . .....|++.|..++|++... .||+|+.||.|.|||+..... ............|.++
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t--P~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET--PFTPGSQAPPSEIKCL 167 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC--CCCCCCCCCcccceEe
Confidence 99999997652 2 1 23568999999999999765 899999999999999975322 1112222234567788
Q ss_pred eccCC---eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEc-cCCeEEEEEeechhhhhccc
Q 019384 153 SLVGN---RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSS-VEGRVAMEFFDLSEASQAKK 227 (342)
Q Consensus 153 s~~~~---~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s-~~~~~~i~~~d~~~~~~~~~ 227 (342)
+++.. .+++++.++++.|||+|..+.........-+.+...++|+|++.. +++++ .|+.-.|.+||++......+
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 88753 688999999999999998643333222233345667899998754 44454 44445678999876543322
Q ss_pred ceeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC-EEEEEEe
Q 019384 228 YAFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR-LLAVASS 305 (342)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~-~las~s~ 305 (342)
.+++|+. .|.++.|++.+ .+|+|++.|+.|.+|+.++++.+.++....+++..+.|+|..- .+++++.
T Consensus 248 -~~~~H~~---------GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asf 317 (1049)
T KOG0307|consen 248 -ILEGHQR---------GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASF 317 (1049)
T ss_pred -hhccccc---------ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhee
Confidence 2467765 48899999876 7899999999999999999999999988888999999999877 6665555
Q ss_pred ccccCCCCCCCCCcEEEEEccCC
Q 019384 306 YTFEEGDKPHEPDAIFVRSVNEI 328 (342)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~ 328 (342)
++ .|-+|++...
T Consensus 318 dg-----------kI~I~sl~~~ 329 (1049)
T KOG0307|consen 318 DG-----------KISIYSLQGT 329 (1049)
T ss_pred cc-----------ceeeeeeecC
Confidence 55 3666666543
No 138
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.5e-19 Score=147.95 Aligned_cols=265 Identities=16% Similarity=0.172 Sum_probs=166.8
Q ss_pred eeecCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCc---eeeccc--CCcceeEEEEeCCCCE-EEEeeCCCcEEEEc
Q 019384 56 EFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGK---EDILGK--HDAPVRCIEYSYAAGQ-VITGSWDKSLKCWD 128 (342)
Q Consensus 56 ~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~---~~~~~~--h~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd 128 (342)
+.+|++.|++++|+. +..+++++.|++|++|+++.-. .+.++. --+--+.+.|.||-+. ++++-...++++|.
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 447999999999985 4567899999999999976422 111110 0123467899998765 46666777899996
Q ss_pred CCC--CCCcceeee--eec----CCCCcEEEE--eccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEee
Q 019384 129 PRG--ASGQERTLV--GTY----PQPERVYSL--SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP 198 (342)
Q Consensus 129 ~~~--~~~~~~~~~--~~~----~~~~~v~~~--s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 198 (342)
+.. ..+...... ..+ .+...+..+ .-.+..|++++.|.+|.||+++ ++......... ....-.+++|
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--~~n~~aavSP 238 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--SSNYDAAVSP 238 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc--ccccceeeCC
Confidence 532 111111111 111 122223333 2234589999999999999998 32221111100 1123356899
Q ss_pred CCceEEEEccCCeEEEEEeech---h---hhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384 199 NGTGYALSSVEGRVAMEFFDLS---E---ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG 272 (342)
Q Consensus 199 ~~~~~~~~s~~~~~~i~~~d~~---~---~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~ 272 (342)
+|+.++++.---++.+ |..- + ..-.+.+.+.+|+. .|.+++|+|+...++|.|.||++||||+
T Consensus 239 ~GRFia~~gFTpDVkV--wE~~f~kdG~fqev~rvf~LkGH~s---------aV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKV--WEPIFTKDGTFQEVKRVFSLKGHQS---------AVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred CCcEEEEecCCCCceE--EEEEeccCcchhhhhhhheeccchh---------heeeeeeCCCcceeEEEecCCcEEEeec
Confidence 9999998887776654 5531 1 11234577888875 5999999999999999999999999997
Q ss_pred C-------CceeeeccC----CCCcceEEEEECCCCCEEEEEEecc-----ccCCCCCCCCCcEEEEEccCCccccCC
Q 019384 273 N-------NKKRLYQYS----KYPTSIAALSFSRDGRLLAVASSYT-----FEEGDKPHEPDAIFVRSVNEIEVKPKP 334 (342)
Q Consensus 273 ~-------~~~~~~~~~----~~~~~V~~v~~spdg~~las~s~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (342)
+ +.+.+.+.. ...+.-..++.||.|+.||.++..+ .|+|+++.+-+.+-=-.+..+++-|.|
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g 385 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG 385 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCC
Confidence 5 233333321 1223334899999999999988744 366776666554433333344444433
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=1.1e-19 Score=160.64 Aligned_cols=236 Identities=16% Similarity=0.206 Sum_probs=172.9
Q ss_pred eeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceee------cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEc
Q 019384 55 GEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDI------LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128 (342)
Q Consensus 55 ~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~------~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd 128 (342)
.++.|...|.++..+...+.+-.+..+-|++||+.....+. ...-...|++|.+.||+..|++|+.-.++.|||
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 34568888888888855555544556789999997754221 123457899999999999999999999999999
Q ss_pred CCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc
Q 019384 129 PRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV 208 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 208 (342)
+...+......+....-.-...+++++.+..+++..||.|.+||+++.....+ ......-..|+.++++|..+.+|+.
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq--fqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec--ccCCCCCceeEEecCCCceeecCCC
Confidence 97654321111111101111234455556777889999999999998643322 2233445678999999999999999
Q ss_pred CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce
Q 019384 209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI 288 (342)
Q Consensus 209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V 288 (342)
|++++ .||+++..+...+.+.. .|.++.++|++.+|+.|.+++.+.|-..... ...++..|.+-|
T Consensus 572 DntvR--cWDlregrqlqqhdF~S------------QIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScV 636 (705)
T KOG0639|consen 572 DNTVR--CWDLREGRQLQQHDFSS------------QIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCV 636 (705)
T ss_pred cccee--ehhhhhhhhhhhhhhhh------------hheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEE
Confidence 99875 59999876665554432 4888999999999999999999998876643 344566788999
Q ss_pred EEEEECCCCCEEEEEEecc
Q 019384 289 AALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 289 ~~v~~spdg~~las~s~~~ 307 (342)
.++.|++-|+++++.+.++
T Consensus 637 LSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 637 LSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred EEEEecccCceeeecCchh
Confidence 9999999999999998754
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=1.7e-18 Score=151.59 Aligned_cols=282 Identities=18% Similarity=0.217 Sum_probs=195.1
Q ss_pred CCCCCCeEEEEEcCCC--CeEEEEeCCCcEEEEECCCc-----eeeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEE
Q 019384 16 NPPSDGISNLRFSNHS--DHLLVSSWDKSVRLYDASAN-----VLRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRL 86 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~--~~l~s~s~Dgti~vwd~~~~-----~~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w 86 (342)
..+...|++++|.|-- +.+|+|..-|.|-+||+.++ ...-...|+++|.++.|+| ..++++.|+||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 4567899999999954 57888889999999999532 2344456999999999985 4568899999999999
Q ss_pred EeccCcee-eccc--CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEE
Q 019384 87 VFSHGKED-ILGK--HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLV 160 (342)
Q Consensus 87 ~~~~~~~~-~~~~--h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~ 160 (342)
|++..... ++.. ....+.++.|+.+...++.+..=|...+||+++..... ..+.. +..+|..+.++ +..++
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-~~~~l--h~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY-ENLRL--HKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc-hhhhh--hhcccceeecCCCCchhee
Confidence 99887632 2322 33456778888877778887777799999998754321 11222 23456666665 45899
Q ss_pred EEEcCCeEEEEeCCCCCCccc--ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh--cccceeeeEEec
Q 019384 161 VATAGRHVNVYDLRNMSQPEQ--RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ--AKKYAFKCHRKS 236 (342)
Q Consensus 161 ~~s~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~--~~~~~~~~h~~~ 236 (342)
+++.|++.+|||+|....... .....+...+.+..|+|++..+++.+.|..++ +||..-... .....+ .|...
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR--v~dss~~sa~~~p~~~I-~Hn~~ 416 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR--VFDSSCISAKDEPLGTI-PHNNR 416 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE--EeecccccccCCcccee-eccCc
Confidence 999999999999997533221 12223445577888999998899999988765 588731111 111111 12211
Q ss_pred CCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCC-cce-EEEEECCCCCEEEEEEec
Q 019384 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP-TSI-AALSFSRDGRLLAVASSY 306 (342)
Q Consensus 237 ~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~-~~V-~~v~~spdg~~las~s~~ 306 (342)
. + .+. ..-..+|.|+..++++|-.-..|-|+|.+.++.+..+..-. ..| .-.+|.|-+..+++|+..
T Consensus 417 t-~-Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 417 T-G-RWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred c-c-ccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence 0 0 001 12235899999999999999999999999988777754322 233 456899999977777654
No 141
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=2.3e-19 Score=147.01 Aligned_cols=293 Identities=15% Similarity=0.139 Sum_probs=184.6
Q ss_pred CCCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeCCCCeEEEecCCcE
Q 019384 6 PPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHDDSSGFSASADHTV 83 (342)
Q Consensus 6 ~~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~~~~~~s~s~D~~i 83 (342)
+||+-.+.|+ +|...|+++.|..+++ |.+|..-|.|++|++++.+-...+ .|...|+.+.-.+++++.+-+-|..+
T Consensus 2 ~pPdP~fvLR-p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L 79 (323)
T KOG0322|consen 2 VPPDPFFVLR-PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLL 79 (323)
T ss_pred CCCCCeeEec-cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceE
Confidence 6899999998 9999999999998765 889999999999999886533332 46778888888888889999999999
Q ss_pred EEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCC-cEEEEcCC---------CCCCcceeeee---ecCCCCcEE
Q 019384 84 RRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDK-SLKCWDPR---------GASGQERTLVG---TYPQPERVY 150 (342)
Q Consensus 84 ~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~-~I~iWd~~---------~~~~~~~~~~~---~~~~~~~v~ 150 (342)
.+|.+..... +..|.-.++++-|.+-. +...+.-. ..-.++-+ .+.. .+..+. .......+.
T Consensus 80 ~lw~ia~s~~--i~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~-tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 80 ILWTIAYSAF--ISIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDT-TQVQIADDSERSKLGSVM 154 (323)
T ss_pred EEEEccCcce--EEEeeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCcc-ceeEccCchhccccCcee
Confidence 9999876442 22344455555555411 11111100 01111111 0110 011111 011122344
Q ss_pred EEecc---CC--eEEEEEcCCeEEEEeCCCCCCcccc--------cccccceeeEEEEEeeCCceEEEEccCCeEEEEEe
Q 019384 151 SLSLV---GN--RLVVATAGRHVNVYDLRNMSQPEQR--------RESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFF 217 (342)
Q Consensus 151 ~~s~~---~~--~~~~~s~d~~v~iwd~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~ 217 (342)
++... +. .++.|-.+|.+.+||+.++....+. ....+...+.++.+.+.-..-+.++.+..... |
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~--~ 232 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM--Y 232 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee--e
Confidence 44432 22 3556777899999999886322111 11122334555555543333344555554443 5
Q ss_pred echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384 218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG 297 (342)
Q Consensus 218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg 297 (342)
++........ ++...... +. .|+.+..-||++.+||+++|+.||||..++...+..++.|...|++++|+||.
T Consensus 233 Sl~~s~gslq--~~~e~~lk----np-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~ 305 (323)
T KOG0322|consen 233 SLNHSTGSLQ--IRKEITLK----NP-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC 305 (323)
T ss_pred eeccccCccc--ccceEEec----CC-CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC
Confidence 5433211111 11101100 00 37778889999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeccccCCCCCCCCCcEEEEEc
Q 019384 298 RLLAVASSYTFEEGDKPHEPDAIFVRSV 325 (342)
Q Consensus 298 ~~las~s~~~~~~~~~~~~~~~~~~~~~ 325 (342)
.++|++|.+. -|=+|++
T Consensus 306 ~lmAaaskD~-----------rISLWkL 322 (323)
T KOG0322|consen 306 ELMAAASKDA-----------RISLWKL 322 (323)
T ss_pred chhhhccCCc-----------eEEeeec
Confidence 9999998876 3777765
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.6e-17 Score=151.78 Aligned_cols=204 Identities=13% Similarity=0.177 Sum_probs=145.0
Q ss_pred CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ecCCceEEEEEeCCCCe-EEEecCCcEEE
Q 019384 8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFHDDSSG-FSASADHTVRR 85 (342)
Q Consensus 8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~V~~~~~~~~~~~-~s~s~D~~i~~ 85 (342)
+..-.++.-+....|-+|+|+ ++.+|.|.+.+|+|.-||+.+.+.+... ...+.|++++..|.... ..++.||.+..
T Consensus 58 w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 58 WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYD 136 (691)
T ss_pred ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence 334444555556789999999 7778899999999999999887655443 45678999999876655 46778886555
Q ss_pred EEeccCce---eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceee--eeecCC--CCcEEEEec-cCC
Q 019384 86 LVFSHGKE---DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTL--VGTYPQ--PERVYSLSL-VGN 157 (342)
Q Consensus 86 w~~~~~~~---~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~--~~~v~~~s~-~~~ 157 (342)
.+...+.. +.+...++.|.+++|+|++..|++|+.||.|++||..++....... +..... ...+.++-+ .++
T Consensus 137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~ 216 (691)
T KOG2048|consen 137 FSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS 216 (691)
T ss_pred EecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC
Confidence 55554442 2344567899999999999999999999999999987654321111 111111 122333332 467
Q ss_pred eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384 158 RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM 214 (342)
Q Consensus 158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i 214 (342)
.|++|-..|+|.+||...+...... ..+...+.|++..+++..+.+++.|+.+..
T Consensus 217 tI~sgDS~G~V~FWd~~~gTLiqS~--~~h~adVl~Lav~~~~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIFGTLIQSH--SCHDADVLALAVADNEDRVFSAGVDPKIIQ 271 (691)
T ss_pred cEEEecCCceEEEEcccCcchhhhh--hhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence 8999988899999999876432211 123456889999999999999999998643
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=1.4e-18 Score=144.61 Aligned_cols=247 Identities=20% Similarity=0.289 Sum_probs=164.3
Q ss_pred cCCCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC---CeE-EEecCCcEEEEE
Q 019384 13 ELGNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS---SGF-SASADHTVRRLV 87 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~---~~~-s~s~D~~i~~w~ 87 (342)
--.+.|.=+|.++.|-| |...+.|+|.|.++||||..+-...-.+...+.|++-+++|-. .++ +|..|-.|++-|
T Consensus 95 ~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 95 QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 33467788999999999 6678889999999999999875554555677888888887532 244 445566799999
Q ss_pred eccCce-eecccCCcceeEEEEeCCCCE-EEEeeCCCcEEEEcCCCCCCcceeeeeec------------CCCCcEEEEe
Q 019384 88 FSHGKE-DILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVGTY------------PQPERVYSLS 153 (342)
Q Consensus 88 ~~~~~~-~~~~~h~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~~------------~~~~~v~~~s 153 (342)
+..+.. ..+.+|.+.|.++.|+|..+. |+|||.||.||+||++...+.. ..+..+ .+..++..++
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf-~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF-RVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee-EEeecccCccCccccccccccceeeeee
Confidence 999884 578999999999999998876 5899999999999998653321 222211 2334566666
Q ss_pred c--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEe---eCCceEEEEccCCeEEEEEeechhhhhcccc
Q 019384 154 L--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY---PNGTGYALSSVEGRVAMEFFDLSEASQAKKY 228 (342)
Q Consensus 154 ~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~ 228 (342)
+ ++..+++++.|..+++|+..+++............+...++++ .+...++.--.++.+ .++++-+....+.
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~l--all~~~sgs~ir~- 330 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSL--ALLNLLEGSFVRR- 330 (397)
T ss_pred ecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeE--EEEEccCceEEEe-
Confidence 5 4668899999999999999887543221111111111111111 111112211222222 3344433322222
Q ss_pred eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
+..|.+ .|+|.+|-|+=+...+|.-|+.|..|...
T Consensus 331 -l~~h~k---------~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 331 -LSTHLK---------RINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred -eecccc---------eeeEEeecCchhhhhccccCCcccccccc
Confidence 233432 58999999998999999999999999763
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.7e-18 Score=142.13 Aligned_cols=275 Identities=13% Similarity=0.165 Sum_probs=183.6
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCceeecccC
Q 019384 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKEDILGKH 99 (342)
Q Consensus 22 V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~h 99 (342)
-.++.|++.|.+||+|+.||.|-|||..+..+ +...+|--+|.+++|+++++ ++++|.|..+.+||+..+....-...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 67999999999999999999999999987653 33457999999999996665 57999999999999988875444445
Q ss_pred CcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeec-----CCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384 100 DAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTY-----PQPERVYSLSLVGNRLVVATAGRHVNVYDL 173 (342)
Q Consensus 100 ~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~-----~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~ 173 (342)
..+|+.+.|+|.. +.++.+-.+..=.+-++..+. +..+... ........+...|++|++|++-|.+.++|.
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~---h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK---HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCc---eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 6889999999954 333333333322233332111 1111110 011111235666889999999999999999
Q ss_pred CCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc-ccceeeeEEecCCCCcee--eeeeEEE
Q 019384 174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA-KKYAFKCHRKSEAGRDIV--YPVNAIA 250 (342)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~-~~~~~~~h~~~~~~~~~~--~~v~~v~ 250 (342)
.+.+.....+ ......+..+.++..|..+++.+.|..++ .|+..+.-.. +-.......+.. +.+ -+=.+|+
T Consensus 183 ~t~e~vas~r-its~~~IK~I~~s~~g~~liiNtsDRvIR--~ye~~di~~~~r~~e~e~~~K~q---DvVNk~~Wk~cc 256 (405)
T KOG1273|consen 183 ETLECVASFR-ITSVQAIKQIIVSRKGRFLIINTSDRVIR--TYEISDIDDEGRDGEVEPEHKLQ---DVVNKLQWKKCC 256 (405)
T ss_pred chheeeeeee-echheeeeEEEEeccCcEEEEecCCceEE--EEehhhhcccCccCCcChhHHHH---HHHhhhhhhhee
Confidence 8864432111 11113456677888899999988887654 5776532111 000000000000 000 0235689
Q ss_pred EcCCCCeEEEecCC-CeEEEEeCCCceeeeccCCCC-cceEEEEECCCCCEEEEEEe
Q 019384 251 FHPIYGTFATGGCD-GFVNVWDGNNKKRLYQYSKYP-TSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 251 ~sp~~~~l~sgs~D-g~I~iWd~~~~~~~~~~~~~~-~~V~~v~~spdg~~las~s~ 305 (342)
|+.+|.+++.|+.. ..++||....|.+++.+.|-. ....++.|.|-...+++-.+
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s 313 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS 313 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccC
Confidence 99999999877743 479999999999999998877 46788999998888877654
No 145
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=1.3e-18 Score=159.79 Aligned_cols=241 Identities=17% Similarity=0.200 Sum_probs=178.5
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEe-CC---CCeEEEecCCcEEEEEeccCc
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFH-DD---SSGFSASADHTVRRLVFSHGK 92 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~-~~---~~~~s~s~D~~i~~w~~~~~~ 92 (342)
...+|.+|+.||+|++||+|..-|++|||++..-+. ...-+|...|.|+.|+ |. ..+++|+-|..|.++|....-
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 357999999999999999999999999999976543 3345799999999998 43 345699999999999987654
Q ss_pred --eeecccCCcceeEEEEeCCC--CEEEEeeCCCcEEEEcCCC-CCCcceeeeee--cCCCCcEEEEeccC--CeEEEEE
Q 019384 93 --EDILGKHDAPVRCIEYSYAA--GQVITGSWDKSLKCWDPRG-ASGQERTLVGT--YPQPERVYSLSLVG--NRLVVAT 163 (342)
Q Consensus 93 --~~~~~~h~~~V~~~~~~~~~--~~l~sgs~D~~I~iWd~~~-~~~~~~~~~~~--~~~~~~v~~~s~~~--~~~~~~s 163 (342)
...+.+|...|+++.|--.| .+.++++.|+.|..--.+. ..+ ...... .....+++.+..++ +.++++.
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g--~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG--RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCc--eeccccccccccceEEEeeeCCCcceEEEEe
Confidence 35688999999999998766 5689999999886432221 111 111111 11233455555554 5899999
Q ss_pred cCCeEEEEeCCCCCCcccccc-cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384 164 AGRHVNVYDLRNMSQPEQRRE-SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI 242 (342)
Q Consensus 164 ~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~ 242 (342)
+|+.|+|||+.++++...... ....+....+...|.|.++++...|.++. ++|+..... .-.+.+|.+
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~--~~Df~sgEc--vA~m~GHsE------- 684 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC--FVDFVSGEC--VAQMTGHSE------- 684 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE--EEEeccchh--hhhhcCcch-------
Confidence 999999999998865433222 22334566778899999999999988765 577754322 222345544
Q ss_pred eeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
.|+.+.|.+|-+.|++.+.||-|.||.+.
T Consensus 685 --~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 685 --AVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred --heeeeeecccchhheeecCCceEEEEECc
Confidence 58999999999999999999999999864
No 146
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.1e-17 Score=140.02 Aligned_cols=232 Identities=16% Similarity=0.198 Sum_probs=162.5
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCcee
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKED 94 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~~ 94 (342)
-.|...+.+.+|-++ ..+++|+-||.||++|+.++.......|.++|.++.+. ..+.+++||+|++|++||..+....
T Consensus 51 ~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~ 129 (323)
T KOG1036|consen 51 FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV 129 (323)
T ss_pred eecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence 467889999999974 57889999999999999987766666799999999998 4667899999999999998864322
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE--Ee
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV--YD 172 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i--wd 172 (342)
.-..-.+.|.|+... ++.|+.|..|..+.+||+++.....+..--..+...+.+++-+++..+++++-+|+|-+ +|
T Consensus 130 ~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 130 GTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred cccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 222234589998775 67899999999999999986443211100112223344445556677899999998665 44
Q ss_pred CCCCCCc-------cc--ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384 173 LRNMSQP-------EQ--RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV 243 (342)
Q Consensus 173 ~~~~~~~-------~~--~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~ 243 (342)
-+...+. .. .....+-+.++.++|+|-.+.+++|+.||.+.+ ||....+..+.+ |+- .
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~--Wd~~~rKrl~q~----~~~-------~ 274 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI--WDLFNRKRLKQL----AKY-------E 274 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE--ccCcchhhhhhc----cCC-------C
Confidence 3311000 00 001122356788999999999999999998765 998543322221 111 1
Q ss_pred eeeeEEEEcCCCCeEEEecC
Q 019384 244 YPVNAIAFHPIYGTFATGGC 263 (342)
Q Consensus 244 ~~v~~v~~sp~~~~l~sgs~ 263 (342)
..|.+++|+.+|..||+++.
T Consensus 275 ~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEEeccCCCeEEEEec
Confidence 25899999999999999874
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.5e-18 Score=151.50 Aligned_cols=232 Identities=20% Similarity=0.267 Sum_probs=160.3
Q ss_pred CCeEEEEeCCCcEEEEECCCc--e----ee----------------eeeecCCceEEEEEeC--CCCeEEEecCCcEEEE
Q 019384 31 SDHLLVSSWDKSVRLYDASAN--V----LR----------------GEFMHGGPVLDCCFHD--DSSGFSASADHTVRRL 86 (342)
Q Consensus 31 ~~~l~s~s~Dgti~vwd~~~~--~----~~----------------~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w 86 (342)
|+++|.|..|-.|.|||+.-. . .+ ...+|++.|.++.|.- ..-+++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 689999999999999997421 0 00 0124888888888863 3446799999999999
Q ss_pred EeccCce-eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc-CCeEEEEE
Q 019384 87 VFSHGKE-DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV-GNRLVVAT 163 (342)
Q Consensus 87 ~~~~~~~-~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~-~~~~~~~s 163 (342)
|+.+++. ..+..|++.|.+++|+|.. ..|++||.|+++++.|.|..... .....+......+.+.+. .+.+++++
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--GKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--CceEEeccceEEEEecCCCceeEEEec
Confidence 9999985 4567799999999999954 67899999999999999842221 111222233333344442 45788889
Q ss_pred cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEccCCeEEEEEeechhhh--hcccceeeeEEecCCCC
Q 019384 164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSEAS--QAKKYAFKCHRKSEAGR 240 (342)
Q Consensus 164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~~~--~~~~~~~~~h~~~~~~~ 240 (342)
.||+|+-+|+|+...+. ....++...+.++.+.+.... +++++.++.+.+ |++.... ......+.
T Consensus 350 ddG~v~~~D~R~~~~~v-wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vkl--w~~~~~~~~~v~~~~~~--------- 417 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPV-WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKL--WKFDVDSPKSVKEHSFK--------- 417 (463)
T ss_pred CCceEEeeecCCCCCce-eEEEeccCCcceEEecCCCCcceeeccccceEEE--EeecCCCCccccccccc---------
Confidence 99999999999875443 222344556778877766544 567788887765 6554322 22221111
Q ss_pred ceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCceee
Q 019384 241 DIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRL 278 (342)
Q Consensus 241 ~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~ 278 (342)
++...|.++.|+-. +||.|+..+-++|||+.+...+
T Consensus 418 --~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 --LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred --ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 22355677777754 5788999999999998876544
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=4.4e-18 Score=155.26 Aligned_cols=263 Identities=16% Similarity=0.222 Sum_probs=183.9
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCceeeccc
Q 019384 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKEDILGK 98 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~ 98 (342)
.|+.++|-|||..|+.+. +..+.|||.+.|. +.+..+|++-|++++|+.++. +++|++|..+.+|.-.... ..-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeeec
Confidence 899999999999887664 5579999998875 456679999999999996655 5699999999999643322 22357
Q ss_pred CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCC
Q 019384 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNM 176 (342)
Q Consensus 99 h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~ 176 (342)
|++.|.|+.|+|-...|+||+.. ..-+|..+. + .+..+....++.+.++ +|..++.|-.+|+|.+-+....
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q--K----~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ--K----SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchh-hccccChhh--h----hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 99999999999988899999864 356787542 1 1222334456667776 5678999999999998865433
Q ss_pred CCcccccccccceeeEEEEEeeCCc-----eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384 177 SQPEQRRESSLKYQTRCVRCYPNGT-----GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251 (342)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~ 251 (342)
......+....+.++.+++|.|... .+++...+.+ +.++.+......+. ......-.|+.+
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT--LSFy~LsG~~Igk~------------r~L~FdP~CisY 230 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT--LSFYQLSGKQIGKD------------RALNFDPCCISY 230 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce--eEEEEecceeeccc------------ccCCCCchhhee
Confidence 2222222122334577888887643 1222222222 23343322111100 111123468899
Q ss_pred cCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 252 sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.|+|+++..|+.|+.+++|-.+ |-.+.++-....+||.++..|+++++++|+-++
T Consensus 231 f~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred ccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence 9999999999999999999654 666777777788999999999999999999754
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.6e-18 Score=151.05 Aligned_cols=276 Identities=13% Similarity=0.171 Sum_probs=185.8
Q ss_pred ccCCCCCCCCeEEEEEcCCCCe-EEEEeCCCcEEEEECCCc--ee-eeeeecCCceEEEEEe-CCCCeEEEecCCcEEEE
Q 019384 12 RELGNPPSDGISNLRFSNHSDH-LLVSSWDKSVRLYDASAN--VL-RGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRL 86 (342)
Q Consensus 12 ~~~~~~~~~~V~~l~fs~~~~~-l~s~s~Dgti~vwd~~~~--~~-~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w 86 (342)
+.+....+-+|+++.|+....+ +++.+.|..+++|.-... .. +....-.+.-.|+... ....+++++..+.|++|
T Consensus 27 ~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiw 106 (673)
T KOG4378|consen 27 EYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIW 106 (673)
T ss_pred ccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeeh
Confidence 3444444566999999987643 456678999999986543 21 1111111222222221 22456789999999999
Q ss_pred EeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC-CCcEEEEeccCC-eEEEEE
Q 019384 87 VFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ-PERVYSLSLVGN-RLVVAT 163 (342)
Q Consensus 87 ~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~-~~~v~~~s~~~~-~~~~~s 163 (342)
|+..+. .+.+.+|+..|+++.++..+.+||+++..|-|.|-.+.+... ...+..... ..+.+.++.... .+.+++
T Consensus 107 dl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 107 DLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred hhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--ccceecCCCCeEEEeecccccceeeEeec
Confidence 998554 356789999999999999999999999999999998765322 222322211 112334444433 567889
Q ss_pred cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384 164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI 242 (342)
Q Consensus 164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~ 242 (342)
.+|.|.+||+...+ +.......+..+...++|+|.... +++.+.|.++ .+||.+........ . .
T Consensus 185 d~G~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki--~~yD~~s~~s~~~l--~----------y 249 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI--NIYDIRSQASTDRL--T----------Y 249 (673)
T ss_pred cCCeEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceE--EEeeccccccccee--e----------e
Confidence 99999999997653 333233334455667888887654 4555666654 56998633222111 1 1
Q ss_pred eeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
.+|..+|+|+++|.+|+.|...|.|..||++.. ..+..+..|...|++++|=|-. .+++=++
T Consensus 250 ~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~-tvltkss 312 (673)
T KOG4378|consen 250 SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP-TVLTKSS 312 (673)
T ss_pred cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc-eeeeccc
Confidence 237899999999999999999999999999854 5678888999999999996665 3444443
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=2.1e-18 Score=145.47 Aligned_cols=248 Identities=18% Similarity=0.211 Sum_probs=171.9
Q ss_pred CCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCC--CeEEEecCCcEEEEEec
Q 019384 17 PPSDGISNLRFSNH----SDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDS--SGFSASADHTVRRLVFS 89 (342)
Q Consensus 17 ~~~~~V~~l~fs~~----~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~~w~~~ 89 (342)
.|.+..+-++|+-+ ..+||.|+.-|.|||.|+..+.+ ....+|.+.|+.+.|.|.. .+++||.|.+||+|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 46777888888864 34788999999999999987654 3456899999999998765 56799999999999999
Q ss_pred cCceee----cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC---ccee----------eee----ec-----
Q 019384 90 HGKEDI----LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG---QERT----------LVG----TY----- 143 (342)
Q Consensus 90 ~~~~~~----~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~---~~~~----------~~~----~~----- 143 (342)
+..... +.+|.+.|.+++|+.++.+|+||+.|.+|++|++....- .... .+. .+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 988543 367999999999999999999999999999999862110 0000 000 00
Q ss_pred --CCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccc---ccc------cccce-----eeEEEEEeeCCceEEEEc
Q 019384 144 --PQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQ---RRE------SSLKY-----QTRCVRCYPNGTGYALSS 207 (342)
Q Consensus 144 --~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~---~~~------~~~~~-----~~~~v~~~~~~~~~~~~s 207 (342)
.|...|-++-+-++.+++=+.++.|..|..-....... ..+ ..++. ....+++.|-++.++++.
T Consensus 247 ~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred cccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence 01111222333467788889999999997622111100 000 00111 122345667778889999
Q ss_pred cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 208 VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 208 ~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
+.|++ ++||++.........+..+.. ...|...+|+.|+..|+...+|++|.-||..
T Consensus 327 q~g~v--~vwdL~~~ep~~~ttl~~s~~-------~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 327 QSGKV--YVWDLDNNEPPKCTTLTHSKS-------GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCcE--EEEECCCCCCccCceEEeccc-------cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 98876 569987554433333332221 1258889999999999999999999999864
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=3.8e-18 Score=149.51 Aligned_cols=258 Identities=19% Similarity=0.252 Sum_probs=169.7
Q ss_pred cCCCCCCCccCCCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCceeeeee---ecCCceEEEEEe-CCCCeEEEe
Q 019384 4 VHPPPTSGRELGNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANVLRGEF---MHGGPVLDCCFH-DDSSGFSAS 78 (342)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~~~~~~---~h~~~V~~~~~~-~~~~~~s~s 78 (342)
+..|-..+.-+.++|+..|.++.|+|. ..++++.|+||+||+-|+.+......+ .-...+..+.|+ .+..++.+.
T Consensus 219 ~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~ 298 (498)
T KOG4328|consen 219 TQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD 298 (498)
T ss_pred CCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee
Confidence 345666778888999999999999994 578999999999999999865322221 122345567776 445566766
Q ss_pred cCCcEEEEEeccCce--eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcE--EEEe
Q 019384 79 ADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERV--YSLS 153 (342)
Q Consensus 79 ~D~~i~~w~~~~~~~--~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v--~~~s 153 (342)
.=|...+||..+... ..+.-|...|.+++++|-. .+|||+|.|++.+|||+|.-.+.....+....|...| ..|+
T Consensus 299 ~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 666888999988763 4567899999999999965 5789999999999999986433221123333333333 4466
Q ss_pred ccCCeEEEEEcCCeEEEEeCCCCCC---cccccccc--cceeeE--EEEEeeCCceEEEEccCCeEEEEEeechhhhhcc
Q 019384 154 LVGNRLVVATAGRHVNVYDLRNMSQ---PEQRRESS--LKYQTR--CVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK 226 (342)
Q Consensus 154 ~~~~~~~~~s~d~~v~iwd~~~~~~---~~~~~~~~--~~~~~~--~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~ 226 (342)
+++..+++.++|.+|++||...... +.....+. ...+.+ ...|.|+...++++..-..+ -+||....+
T Consensus 379 Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~I--Dv~~~~~~q--- 453 (498)
T KOG4328|consen 379 PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPI--DVFDGNGGQ--- 453 (498)
T ss_pred CCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcce--eEEcCCCCE---
Confidence 6666799999999999999852211 11100011 111122 23588988888888766654 457764322
Q ss_pred cceeeeEEecCCCCceeeeeeE-EEEcCCCCeE-EEecCCCeEEEEeCC
Q 019384 227 KYAFKCHRKSEAGRDIVYPVNA-IAFHPIYGTF-ATGGCDGFVNVWDGN 273 (342)
Q Consensus 227 ~~~~~~h~~~~~~~~~~~~v~~-v~~sp~~~~l-~sgs~Dg~I~iWd~~ 273 (342)
.....|.... ..|.+ ..|||-+..+ +.|+..|.|+||.-+
T Consensus 454 -~v~el~~P~~------~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 454 -MVCELHDPES------STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred -EeeeccCccc------cccccceeecccccceeccCCccceEEEEecC
Confidence 1122222211 12444 3799998845 555678899999644
No 152
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=5e-19 Score=164.88 Aligned_cols=262 Identities=16% Similarity=0.208 Sum_probs=173.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-e
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-E 93 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-~ 93 (342)
+|-++|+|+.|+..|.+++||+.|..+|||...++.+. ...+|++.|+.++.+....+ .++|.|..|++|-+..+. .
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 45588999999999999999999999999998776654 44689999999999855554 589999999999998877 4
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC-CCcceeeeeecCCCCcEE--EEeccCCeEEEEEcCCeEEE
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA-SGQERTLVGTYPQPERVY--SLSLVGNRLVVATAGRHVNV 170 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~-~~~~~~~~~~~~~~~~v~--~~s~~~~~~~~~s~d~~v~i 170 (342)
.++.+|++.|++++|+|- .+.+.||++++||.+-. .......... .....+. -+.-.+..+++++.|++-+.
T Consensus 268 svLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n 342 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFENNGDRFLTGSRDGEARN 342 (1113)
T ss_pred HHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCc-ccccceeeeeccccccccccccCCccccc
Confidence 578999999999999994 38899999999997611 1100001110 0111122 23334567888888887776
Q ss_pred EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250 (342)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 250 (342)
|.+....-. . .....+....+-..+ +.+.-....+..|+..+.+.. ..+.+| ...+..+.
T Consensus 343 ~e~~~l~~~----~----~~lif~t~ssd~~~~-~~~ar~~~~~~vwnl~~g~l~--H~l~gh---------sd~~yvLd 402 (1113)
T KOG0644|consen 343 HEFEQLAWR----S----NLLIFVTRSSDLSSI-VVTARNDHRLCVWNLYTGQLL--HNLMGH---------SDEVYVLD 402 (1113)
T ss_pred chhhHhhhh----c----cceEEEecccccccc-ceeeeeeeEeeeeecccchhh--hhhccc---------ccceeeee
Confidence 654321100 0 001111111111111 111223345566777544222 112222 23577889
Q ss_pred EcCCCCeE-EEecCCCeEEEEeCCCceeeecc-CCCCcceEEEEECCCCCEEEEEE
Q 019384 251 FHPIYGTF-ATGGCDGFVNVWDGNNKKRLYQY-SKYPTSIAALSFSRDGRLLAVAS 304 (342)
Q Consensus 251 ~sp~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~V~~v~~spdg~~las~s 304 (342)
+||-+..+ .+++.||...|||+-.+..++.+ .+| ..+..-+||+||+.++...
T Consensus 403 ~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd 457 (1113)
T KOG0644|consen 403 VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSD 457 (1113)
T ss_pred ecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCC
Confidence 99976654 78999999999999877766544 454 5677899999999887554
No 153
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=6.4e-18 Score=148.22 Aligned_cols=248 Identities=17% Similarity=0.197 Sum_probs=177.3
Q ss_pred CCceEEEEEeCCCCe-EEEecCCcEEEEEeccCceee---cccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCC
Q 019384 60 GGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDI---LGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASG 134 (342)
Q Consensus 60 ~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~~---~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~ 134 (342)
.++|+++.|+|...+ ++|+.|++++++-++...-.. +.--..+|.+++|.|+|. .+++++--.....||+.+...
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 468999999987765 699999999999987665222 222357899999999998 889999989999999986543
Q ss_pred cceeeeeec-CCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384 135 QERTLVGTY-PQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA 213 (342)
Q Consensus 135 ~~~~~~~~~-~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~ 213 (342)
......... +.....+.++.++++|++++..|.|.+.-..++... ..-.+.+.+..+.|+.+++.+++++.+|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli---~s~KieG~v~~~~fsSdsk~l~~~~~~Ge-- 367 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI---TSFKIEGVVSDFTFSSDSKELLASGGTGE-- 367 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh---heeeeccEEeeEEEecCCcEEEEEcCCce--
Confidence 211111111 122345678888899999999999999887765321 11234466788889999998888888885
Q ss_pred EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC------ceeeeccCCCCcc
Q 019384 214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN------KKRLYQYSKYPTS 287 (342)
Q Consensus 214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~------~~~~~~~~~~~~~ 287 (342)
+++||++......+|.-.+.. -=.++|.++++.+||+||..|.|.|||.++ .+++..+..-...
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v----------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSV----------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEEEecCCcceEEEEeecCcc----------ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 477999765433333222110 124678889999999999999999999653 4567777777788
Q ss_pred eEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEE
Q 019384 288 IAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFV 322 (342)
Q Consensus 288 V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~ 322 (342)
|.+|+|+||+++||.+|.-.-..=+..+-|++-+-
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF 472 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF 472 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeee
Confidence 99999999999999998643222223444444443
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=1.5e-17 Score=151.14 Aligned_cols=162 Identities=23% Similarity=0.264 Sum_probs=113.6
Q ss_pred cCCCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCce---e---eeeeecCC-ceEEEEEeC-CCCeEEEecCCcE
Q 019384 13 ELGNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANV---L---RGEFMHGG-PVLDCCFHD-DSSGFSASADHTV 83 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~---~---~~~~~h~~-~V~~~~~~~-~~~~~s~s~D~~i 83 (342)
.+...|++.|+.+.|+| +..+|||||.|..|+||.+..+. + ...++|++ .|-++.|++ .+.++..+.-+.+
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 34468999999999999 56789999999999999997432 2 11234554 456888973 3334444556889
Q ss_pred EEEEeccCcee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC--eEE
Q 019384 84 RRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLV 160 (342)
Q Consensus 84 ~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--~~~ 160 (342)
.+||+.+++.. -+.+|.+.|.+..|+.||.+|+++..|+.|+|||.+.... ..+....+... +-..+.+-|+ +++
T Consensus 153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~-piQ~te~H~~~-rdsRv~w~Gn~~rli 230 (1012)
T KOG1445|consen 153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME-PIQTTEGHGGM-RDSRVLWAGNWERLI 230 (1012)
T ss_pred EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC-ccccccccccc-hhheeeeccchhhhh
Confidence 99999998854 5789999999999999999999999999999999985322 22222333221 2223444454 455
Q ss_pred EEEcC----CeEEEEeCCCC
Q 019384 161 VATAG----RHVNVYDLRNM 176 (342)
Q Consensus 161 ~~s~d----~~v~iwd~~~~ 176 (342)
+.+.+ ..|++||.+..
T Consensus 231 sTGF~~~R~reV~~~Dtr~f 250 (1012)
T KOG1445|consen 231 STGFTTKRIREVRAYDTRKF 250 (1012)
T ss_pred hcccchhhheeeeeeecccc
Confidence 44433 35888887653
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=2.9e-17 Score=142.12 Aligned_cols=276 Identities=18% Similarity=0.205 Sum_probs=169.6
Q ss_pred CCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCc-------e---eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEE
Q 019384 19 SDGISNLRFSNHSD-HLLVSSWDKSVRLYDASAN-------V---LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRL 86 (342)
Q Consensus 19 ~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~-------~---~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w 86 (342)
...|+++.|.+++. .||||+.|..||||.+... + +-.+..|...|++|.|++++.+ ++|+.++.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56789999999776 9999999999999998532 1 1122369999999999987765 588888999999
Q ss_pred Eec--------c-----Cc----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcE
Q 019384 87 VFS--------H-----GK----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERV 149 (342)
Q Consensus 87 ~~~--------~-----~~----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v 149 (342)
-.. + .+ ...+.+|...|+.++|+|++..+++++.|.++++||+..+.. ...+..+.+-..-
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l--~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL--LAILDDHEHYVQG 170 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee--Eeeccccccccce
Confidence 765 2 11 134678999999999999999999999999999999975432 2233333332333
Q ss_pred EEEeccCCeEEEEEcCCeEEEEeCCCCCCc-------------------cccccc--ccceeeEEEEEeeCCceEEEEcc
Q 019384 150 YSLSLVGNRLVVATAGRHVNVYDLRNMSQP-------------------EQRRES--SLKYQTRCVRCYPNGTGYALSSV 208 (342)
Q Consensus 150 ~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~-------------------~~~~~~--~~~~~~~~v~~~~~~~~~~~~s~ 208 (342)
+++++....+++-+.|...+.+.+...... ..+.-+ .++.-...++|.|+|..+++.+.
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 334333445666666654444443221110 000000 01111234567888887765432
Q ss_pred ----CCeE---EEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC------------------CCCeEEEecC
Q 019384 209 ----EGRV---AMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP------------------IYGTFATGGC 263 (342)
Q Consensus 209 ----~~~~---~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp------------------~~~~l~sgs~ 263 (342)
++.+ ..++|+-..-+.+ .+|.... ..++.++.|+| .+..+|.+..
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~l~rP-----~~~lp~~-----~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~ 320 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKDLKRP-----AARLPSP-----KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK 320 (434)
T ss_pred eeeeCCceeeceeEeeccccccCc-----eeecCCC-----CcceEEEEeeeeEEEeccccccccccccccceEEEEeec
Confidence 2221 1123332111000 0111100 11233344443 2333455554
Q ss_pred CCeEEEEeCCCceeeeccC-CCCcceEEEEECCCCCEEEEEEecc
Q 019384 264 DGFVNVWDGNNKKRLYQYS-KYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 264 Dg~I~iWd~~~~~~~~~~~-~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
..|+|||.+....+.... -|-..|++++||+||..|+.+|-++
T Consensus 321 -~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 321 -NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred -ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 589999999876665433 4778899999999999999988654
No 156
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.4e-17 Score=139.95 Aligned_cols=280 Identities=17% Similarity=0.210 Sum_probs=188.9
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC------ceeeeeee--cCCceEEEEEe-CCCCeEEEecCCcEEEE
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA------NVLRGEFM--HGGPVLDCCFH-DDSSGFSASADHTVRRL 86 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~------~~~~~~~~--h~~~V~~~~~~-~~~~~~s~s~D~~i~~w 86 (342)
.+|.+.|++|.||.+++.||+|+.|-.++||.... .+.+...+ |...|.|++|. .+..+++|..++++.+.
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 37889999999999999999999999999999743 34444444 55789999997 45556799999999999
Q ss_pred EeccCceeecccCCc---ceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEEEecc---CCeE
Q 019384 87 VFSHGKEDILGKHDA---PVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYSLSLV---GNRL 159 (342)
Q Consensus 87 ~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~~s~~---~~~~ 159 (342)
|+++........|.. .|+.+..+|.++.|++.+.++.|.+||.+.... ....+.. ..+....+.-++ +..|
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A--N~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA--NSGKNFYTAEFHPETPALI 210 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec--CCCccceeeeecCCCceeE
Confidence 999987655555554 899999999989999999999999999874321 1111112 122223333343 4478
Q ss_pred EEEEcCCeEEEEeCCCCCCcccccccccceee-----EEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceee-eE
Q 019384 160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQT-----RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK-CH 233 (342)
Q Consensus 160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~-~h 233 (342)
++++..+.+.+||.+....+..+..-....+. ..+.|+|+|+.++..-- +..- .+||+... +.+.++ .|
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR-~~~P-~~~D~~S~---R~~V~k~D~ 285 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR-GKCP-LYFDFISQ---RCFVLKSDH 285 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc-cCCC-EEeeeecc---cceeEeccC
Confidence 88888888999999987655433322111111 35678888876643321 1111 24565321 112221 11
Q ss_pred EecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC-----c------------------eeeeccCCCCcceEE
Q 019384 234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN-----K------------------KRLYQYSKYPTSIAA 290 (342)
Q Consensus 234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~-----~------------------~~~~~~~~~~~~V~~ 290 (342)
.. .+.-....+-+++|--|. .+++||.+=.|++|.+-. + +.+..+++|.+-++.
T Consensus 286 N~--~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 286 NP--NGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred CC--Ccceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 11 121222346678887654 499999999999997531 1 123467899999999
Q ss_pred EEECCCCCEEEEEEe
Q 019384 291 LSFSRDGRLLAVASS 305 (342)
Q Consensus 291 v~~spdg~~las~s~ 305 (342)
+.|+|-..+|++++-
T Consensus 363 VRF~~H~~~l~SSGV 377 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGV 377 (609)
T ss_pred eeecCCcceEeccch
Confidence 999999888876653
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=2.4e-17 Score=145.82 Aligned_cols=259 Identities=17% Similarity=0.232 Sum_probs=165.9
Q ss_pred EEeCCCcEEEEECCCceeeeeeecC---CceEEEEEeCCCCeEEEe--cCCcEEEEEeccC--ceeeccc-CCcceeEEE
Q 019384 36 VSSWDKSVRLYDASANVLRGEFMHG---GPVLDCCFHDDSSGFSAS--ADHTVRRLVFSHG--KEDILGK-HDAPVRCIE 107 (342)
Q Consensus 36 s~s~Dgti~vwd~~~~~~~~~~~h~---~~V~~~~~~~~~~~~s~s--~D~~i~~w~~~~~--~~~~~~~-h~~~V~~~~ 107 (342)
.+|...+++|||...-.....+.|. -.+..++|.....+++++ .|..+++|.-... ....++. ..+.-.|++
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHh
Confidence 3444457999999765444444332 238899997655565554 5666788864433 1222211 112333444
Q ss_pred EeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCccccccc
Q 019384 108 YSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPEQRRES 185 (342)
Q Consensus 108 ~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~ 185 (342)
.....-++++|+..+.|+|||++. +.....+..+ ..+|..+.++ ..+|++++.+|+|.+-.+.++... ..+..
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lkdh--~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-t~f~~ 161 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRA--KLIHRFLKDH--QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-TTFTI 161 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHH--HHHhhhccCC--cceeEEEEecCCcceeEEeccCCcEEEEecccCccc-cceec
Confidence 333446899999999999999973 2222233333 3456666654 568999999999999998876332 22222
Q ss_pred ccceeeEEEEEeeCCceE-EEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecC
Q 019384 186 SLKYQTRCVRCYPNGTGY-ALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGC 263 (342)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~-~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~ 263 (342)
.....+.-+.++|..+.+ .+++.+|.+ .+||+........+ ...|. .|...|+|+|.++ .|++-+.
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~V--tlwDv~g~sp~~~~-~~~Hs---------AP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAV--TLWDVQGMSPIFHA-SEAHS---------APCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeE--EEEeccCCCcccch-hhhcc---------CCcCcceecCCccceEEEecc
Confidence 222334567788876654 455677766 56998543322222 23343 2678899999877 5688999
Q ss_pred CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe------ccccCCC
Q 019384 264 DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS------YTFEEGD 312 (342)
Q Consensus 264 Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~------~~~~~~~ 312 (342)
|..|++||....+....+. +..+...++|+++|.+|++|.+ +|+++.+
T Consensus 230 Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 9999999998765544432 4457899999999999999997 5666554
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=7.7e-17 Score=136.07 Aligned_cols=283 Identities=18% Similarity=0.287 Sum_probs=180.0
Q ss_pred cCCCCCCCCeEEEEEcC-----CCCeEEEEeCCCcEEEEECCCce---eeeee---ecCCceEEEEEe-C----CCCeEE
Q 019384 13 ELGNPPSDGISNLRFSN-----HSDHLLVSSWDKSVRLYDASANV---LRGEF---MHGGPVLDCCFH-D----DSSGFS 76 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~-----~~~~l~s~s~Dgti~vwd~~~~~---~~~~~---~h~~~V~~~~~~-~----~~~~~s 76 (342)
.|.+.|...|+.++|++ +.+.+||++. .++.||...... +...+ .|...-..|+|. + +-.++.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45678889999999995 3345565554 578999975432 22222 256677888886 2 123567
Q ss_pred EecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEe
Q 019384 77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLS 153 (342)
Q Consensus 77 ~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s 153 (342)
|+.-|.|++.|+.++. ...+.+|+..|+.+.+.|+. ++++|+|.|.+||+|++++..+ ...++..+ |-..|.+++
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--v~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--VAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--EEEecccccccCcEEEEE
Confidence 8888999999998877 45689999999999999976 6889999999999999986543 23344332 334566655
Q ss_pred c--cCCeEEEEEcCCeEEEEeCCCCCCccc--cc--------c-------ccc---------ceeeEEEEEeeCCceEEE
Q 019384 154 L--VGNRLVVATAGRHVNVYDLRNMSQPEQ--RR--------E-------SSL---------KYQTRCVRCYPNGTGYAL 205 (342)
Q Consensus 154 ~--~~~~~~~~s~d~~v~iwd~~~~~~~~~--~~--------~-------~~~---------~~~~~~v~~~~~~~~~~~ 205 (342)
+ ++++|++++-|-.+++|++...+.... .. . .++ ...+.|+.|. |..+++
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS 266 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS 266 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee
Confidence 5 577999999999999999974321100 00 0 000 0011122222 244556
Q ss_pred EccCCeEEEEEeechhhhh----ccc----ceeeeEEecCCCCceeeeeeEE--EEcCCCCeEEEecCCCeEEEEeCCCc
Q 019384 206 SSVEGRVAMEFFDLSEASQ----AKK----YAFKCHRKSEAGRDIVYPVNAI--AFHPIYGTFATGGCDGFVNVWDGNNK 275 (342)
Q Consensus 206 ~s~~~~~~i~~~d~~~~~~----~~~----~~~~~h~~~~~~~~~~~~v~~v--~~sp~~~~l~sgs~Dg~I~iWd~~~~ 275 (342)
-+.++.+. +|-...-.. .+. ..+.++-+.. +..|.-+ +|.|-+++||.|...|.|++||+++.
T Consensus 267 kscenaI~--~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-----~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 267 KSCENAIV--CWKPGKLEESIHNVKPPESATTILGEFDYP-----MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred cccCceEE--EEecchhhhhhhccCCCccceeeeeEeccC-----ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 56666544 455411000 000 0011111100 0123334 56677899999999999999999865
Q ss_pred eee--ecc--CCCCcceEEEEECCCCCEEEEEEecc
Q 019384 276 KRL--YQY--SKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 276 ~~~--~~~--~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
... .++ ......|...+||.||.+|+..+.+.
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred CCccCceEEeccccceeeeeeecccCcEEEEEeCCC
Confidence 432 222 23346899999999999988877543
No 159
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=8.4e-19 Score=161.18 Aligned_cols=187 Identities=18% Similarity=0.192 Sum_probs=147.2
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK- 92 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~- 92 (342)
..|+..|-+|.|+++..+|++|+.||+||+||+..++ .+.+.+|...+..+.|+|-+.. ++++.|..+++||.....
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc 146 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC 146 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc
Confidence 5789999999999999999999999999999998776 4566789999999999986654 578999999999998555
Q ss_pred eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccCC--eEEEEEcCCeEE
Q 019384 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVGN--RLVVATAGRHVN 169 (342)
Q Consensus 93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~~--~~~~~s~d~~v~ 169 (342)
...+.+|...|.+++|+|+|.++++|+.|.+++|||+..+. ++..++ ++..+..+.+++. .++.|+.|++++
T Consensus 147 ~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-----~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-----LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred eeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-----cccccccccccccccccCchhhhhccCCCCceee
Confidence 45677899999999999999999999999999999986432 222332 4455555666554 567899999999
Q ss_pred EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384 170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE 209 (342)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~ 209 (342)
+||+++...... .......+.|.+|.|++..+++|...
T Consensus 222 f~dletfe~I~s--~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 222 FWDLETFEVISS--GKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeccceeEEeec--cCCccCCceeeeecCCceeeecCchh
Confidence 999997533211 11123457788999999877776543
No 160
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=140.38 Aligned_cols=220 Identities=18% Similarity=0.215 Sum_probs=159.0
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccC-----
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHG----- 91 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~----- 91 (342)
.+-|.+|+-+|+|.+|+.|.--|.+.+|.+++|+++.. .+|=++|+++.|+.|+. ++|||.||.|.+|.+..-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 45689999999999999888999999999999986544 47889999999996655 579999999999986321
Q ss_pred -----ceeecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc
Q 019384 92 -----KEDILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA 164 (342)
Q Consensus 92 -----~~~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~ 164 (342)
....+..|+-+|+.+...+. ..+|+|+|.|.+||+||+..+... . ...+......+.+++....+.+|+.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--l-ti~fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--L-TITFPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--E-EEecCCcceeEEEcccccEEEecCC
Confidence 12357889999999887764 358999999999999999754321 1 1122333444556666678899999
Q ss_pred CCeEEEEeCCCCCCccc--------------ccccccce--eeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccc
Q 019384 165 GRHVNVYDLRNMSQPEQ--------------RRESSLKY--QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKY 228 (342)
Q Consensus 165 d~~v~iwd~~~~~~~~~--------------~~~~~~~~--~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~ 228 (342)
+|.|.+.++-....... ........ .++|++.+-||..+++|+.||.+.+ ||....+..+..
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv--Wdi~S~Q~iRtl 315 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV--WDIYSKQCIRTL 315 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE--EecchHHHHHHH
Confidence 99998888754321000 00111223 6899999999999999999998764 998544333322
Q ss_pred eeeeEEecCCCCceeeeeeEEEEcCC
Q 019384 229 AFKCHRKSEAGRDIVYPVNAIAFHPI 254 (342)
Q Consensus 229 ~~~~h~~~~~~~~~~~~v~~v~~sp~ 254 (342)
. | ..++|+.+.+.|-
T Consensus 316 ~---~--------~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 316 Q---T--------SKGPVTNLQINPL 330 (476)
T ss_pred h---h--------hccccceeEeecc
Confidence 1 1 1237888888664
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=6.3e-17 Score=141.43 Aligned_cols=202 Identities=19% Similarity=0.213 Sum_probs=144.6
Q ss_pred CCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCceeeeeee-cCCceEEEEEeC--CCCeEEEecCCcEEEEEecc
Q 019384 15 GNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHD--DSSGFSASADHTVRRLVFSH 90 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~~~ 90 (342)
+..|.+.|-+|+|... .+.|||||.|.||++||+.++++...+. |++.|.++.|.+ ...+++||.|+++.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 3579999999999986 4678999999999999999998776665 889999999974 34568999999999999875
Q ss_pred Cc-eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEEEEEcC
Q 019384 91 GK-EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLVVATAG 165 (342)
Q Consensus 91 ~~-~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~~~s~d 165 (342)
.. ....-...+.|-.++|.|.. ..++++..||+++-+|+|+... ....+..|.. .|.+++.+ ++.+++++.|
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-PVWTLKAHDD--EISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-ceeEEEeccC--CcceEEecCCCCcceeecccc
Confidence 32 12223345778999999866 4678889999999999997543 2333444444 44455553 5689999999
Q ss_pred CeEEEEeCCCCCCcccccccccc-eeeEEEEEeeCCceE-EEEccCCeEEEEEeechhh
Q 019384 166 RHVNVYDLRNMSQPEQRRESSLK-YQTRCVRCYPNGTGY-ALSSVEGRVAMEFFDLSEA 222 (342)
Q Consensus 166 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~s~~~~~~i~~~d~~~~ 222 (342)
+.|++|++...+. .....+.+. ....|.++.|+-..+ ++++..+ .+++||+...
T Consensus 396 ~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~--~~~vwd~~~~ 451 (463)
T KOG0270|consen 396 KVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA--VLRVWDIFTN 451 (463)
T ss_pred ceEEEEeecCCCC-cccccccccccceeecccCCCcceEEEecCccc--eEEEeecccC
Confidence 9999999876432 111122222 234566777776554 4555554 4567997543
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=3.6e-16 Score=130.09 Aligned_cols=273 Identities=19% Similarity=0.291 Sum_probs=181.9
Q ss_pred CeEEEEEcC---CCCeEEEEeC----CCcEEEEECCC--ceee--eeeecCCceEEEEEeCCCC----eEEEecCCcEEE
Q 019384 21 GISNLRFSN---HSDHLLVSSW----DKSVRLYDASA--NVLR--GEFMHGGPVLDCCFHDDSS----GFSASADHTVRR 85 (342)
Q Consensus 21 ~V~~l~fs~---~~~~l~s~s~----Dgti~vwd~~~--~~~~--~~~~h~~~V~~~~~~~~~~----~~s~s~D~~i~~ 85 (342)
.++++.||. ...+||.||. .+.|.|-.+.. ++++ ..+.|.-+++.+.|.|+.. -+.|+.+..+|+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRl 125 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRL 125 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEE
Confidence 567888884 2457888873 47777777643 3333 3457889999999987653 246667778999
Q ss_pred EEeccCc--ee---ec-----ccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCC-CCcceeeeeecCCCCcEEEEe
Q 019384 86 LVFSHGK--ED---IL-----GKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGA-SGQERTLVGTYPQPERVYSLS 153 (342)
Q Consensus 86 w~~~~~~--~~---~~-----~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~-~~~~~~~~~~~~~~~~v~~~s 153 (342)
|.+...+ .. .+ ..+..++++.+|+. +-++|.++|.|-|+.|||++++ .....+.+- .|-..|..+.
T Consensus 126 Wri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI--AHDKEV~DIa 203 (364)
T KOG0290|consen 126 WRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI--AHDKEVYDIA 203 (364)
T ss_pred EeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE--ecCcceeEEE
Confidence 9887432 11 12 34567899999986 4578999999999999999875 211122222 2445677777
Q ss_pred ccC---CeEEEEEcCCeEEEEeCCCCCCccccccccc-ceeeEEEEEeeCCceE-EEEccCCeEEEEEeechhhhhcccc
Q 019384 154 LVG---NRLVVATAGRHVNVYDLRNMSQPEQRRESSL-KYQTRCVRCYPNGTGY-ALSSVEGRVAMEFFDLSEASQAKKY 228 (342)
Q Consensus 154 ~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~s~~~~~~i~~~d~~~~~~~~~~ 228 (342)
+.. +.|+++++||.+|+||+|..+......+.+- ......+++.++...+ ++-..+ ...+.+.|++.... ..-
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d-S~~V~iLDiR~P~t-pva 281 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-SNKVVILDIRVPCT-PVA 281 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC-CceEEEEEecCCCc-cee
Confidence 743 5799999999999999998755433333322 2334556666655433 333333 23456688864322 223
Q ss_pred eeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCcee------eeccCCCCcceEEEEECC-CCCEE
Q 019384 229 AFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNKKR------LYQYSKYPTSIAALSFSR-DGRLL 300 (342)
Q Consensus 229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~~~------~~~~~~~~~~V~~v~~sp-dg~~l 300 (342)
.++.|+. .|+.++|.|.. ..|+||+.|..+-|||+...-. +-.++ ..++|+.+.|+| .+.+|
T Consensus 282 ~L~~H~a---------~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 282 RLRNHQA---------SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred hhhcCcc---------cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEE
Confidence 4556654 69999999985 4799999999999999874221 11222 457899999985 56699
Q ss_pred EEEEecc
Q 019384 301 AVASSYT 307 (342)
Q Consensus 301 as~s~~~ 307 (342)
+.++..-
T Consensus 352 ai~~~kk 358 (364)
T KOG0290|consen 352 AICFGKK 358 (364)
T ss_pred EEEecCe
Confidence 8887544
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=2.8e-16 Score=135.60 Aligned_cols=206 Identities=17% Similarity=0.174 Sum_probs=141.0
Q ss_pred cCCCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCce--------eeeeeecCCceEEEEEeC--CCCeEEEecCC
Q 019384 13 ELGNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANV--------LRGEFMHGGPVLDCCFHD--DSSGFSASADH 81 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~--------~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~ 81 (342)
.+--+|.+.|..++|.|. .+.|||||.|.+|+||++..+. ...+.+|+..|--++|+| ..-+++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 344689999999999995 5678999999999999985432 344568999999999985 44568999999
Q ss_pred cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC--CcEEEEeccCCeE
Q 019384 82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP--ERVYSLSLVGNRL 159 (342)
Q Consensus 82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~--~~v~~~s~~~~~~ 159 (342)
+|.+|++.++....-..|.+.|+++.|+.+|.+|+|.+.|+.|||||.++++... .. ..+.+. .+++ +--+++.+
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~-e~-~~heG~k~~Rai-fl~~g~i~ 231 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS-EG-VAHEGAKPARAI-FLASGKIF 231 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee-ec-ccccCCCcceeE-EeccCcee
Confidence 9999999999855444599999999999999999999999999999998754321 11 122222 2222 22345533
Q ss_pred EEEE---cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh
Q 019384 160 VVAT---AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA 222 (342)
Q Consensus 160 ~~~s---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~ 222 (342)
.++. .++.+-+||-.+.+.+....+.....-+..-.+.++...+.+++. |+..|++|.+...
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK-GD~~IRYyEit~d 296 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK-GDSSIRYFEITNE 296 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec-CCcceEEEEecCC
Confidence 3332 235688999887655533222222111222234566666655543 3335677877543
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=1.8e-14 Score=132.12 Aligned_cols=273 Identities=24% Similarity=0.325 Sum_probs=186.5
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--eeeeeecC-CceEEEEE-eCCCC-eE-EEec-CCcEEEE
Q 019384 14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LRGEFMHG-GPVLDCCF-HDDSS-GF-SASA-DHTVRRL 86 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~~~~~h~-~~V~~~~~-~~~~~-~~-s~s~-D~~i~~w 86 (342)
....|...|..+.|.+.+..++.++.|+.+.+|+...+. ......+. ..+..+.+ .++.. .+ ..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456889999999999999999999999999999998764 33333323 26666666 55444 33 3344 8899999
Q ss_pred Eecc--CceeecccCCcceeEEEEeCCCCEEEEeeC-CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCC-eEE
Q 019384 87 VFSH--GKEDILGKHDAPVRCIEYSYAAGQVITGSW-DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGN-RLV 160 (342)
Q Consensus 87 ~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~-D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~-~~~ 160 (342)
+... .....+..|...|..++|+|++..+++++. |+.+++|+...... ...+.. +...+..+.+ .+. .++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP--LSTLAG--HTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--EEeecc--CCCceEEEEEcCCcceEEE
Confidence 9987 445677899999999999999988888885 99999999875221 122222 2333444444 343 344
Q ss_pred EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCC
Q 019384 161 VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240 (342)
Q Consensus 161 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~ 240 (342)
+++.|+.+++||.............+. ... ...+++++..+++++.++.+. +|+...... ....+..|
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~-~~~~~~~~------- 283 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDGTIR--LWDLRSSSS-LLRTLSGH------- 283 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCCCC-cce-eEeECCCCCEEEEecCCCcEE--EeeecCCCc-EEEEEecC-------
Confidence 448899999998874422211111111 111 116788887777788888764 588754332 11111222
Q ss_pred ceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC--CCCcceEEEEECCCCCEEEEEE
Q 019384 241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSRDGRLLAVAS 304 (342)
Q Consensus 241 ~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~V~~v~~spdg~~las~s 304 (342)
...|.++.|+|++..+++++.|+.+++||..+........ .|...+..+.|++++..++.+.
T Consensus 284 --~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 284 --SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred --CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence 2368899999988888889999999999988776555444 7777899999954435666663
No 165
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.2e-15 Score=129.53 Aligned_cols=199 Identities=19% Similarity=0.160 Sum_probs=127.3
Q ss_pred eEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc
Q 019384 104 RCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR 183 (342)
Q Consensus 104 ~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~ 183 (342)
.+++|+.+|..+++|+.||++|+|+..+.... .....+.....-..|++++..+++.+.| ..++|+..++.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~--l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI--LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh--hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 67999999999999999999999994322111 0111222334445667777889999999 89999999874322222
Q ss_pred ccccceeeEEEEEeeCC---ceEEEEc--cCCeEE---EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC
Q 019384 184 ESSLKYQTRCVRCYPNG---TGYALSS--VEGRVA---MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY 255 (342)
Q Consensus 184 ~~~~~~~~~~v~~~~~~---~~~~~~s--~~~~~~---i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~ 255 (342)
....+.....+.|.-++ ...+.+. ..+.+. +.+|+-. ........+.. ...|++++.+++|
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~----------~~siSsl~VS~dG 293 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKR----------FKSISSLAVSDDG 293 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhc----------cCcceeEEEcCCC
Confidence 11222233344454443 2122222 222222 1223321 00011111111 1258999999999
Q ss_pred CeEEEecCCCeEEEEeCCCceeeecc-CCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384 256 GTFATGGCDGFVNVWDGNNKKRLYQY-SKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE 327 (342)
Q Consensus 256 ~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
+++|.|+.||.|-|++..+.++++.. +.|...|+.+.|+||.+++++.|++. .+.|.+++.
T Consensus 294 kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~-----------~~~v~~l~v 355 (398)
T KOG0771|consen 294 KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN-----------EAAVTKLAV 355 (398)
T ss_pred cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC-----------ceeEEEEee
Confidence 99999999999999999988877654 46889999999999999999977654 366666654
No 166
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.2e-16 Score=138.61 Aligned_cols=279 Identities=19% Similarity=0.202 Sum_probs=198.6
Q ss_pred CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--eeeeeecCCceEEEEEe---CCCCeEEEecCCcEEEEEec
Q 019384 15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LRGEFMHGGPVLDCCFH---DDSSGFSASADHTVRRLVFS 89 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~~~~~h~~~V~~~~~~---~~~~~~s~s~D~~i~~w~~~ 89 (342)
.++|.+.|..|.|+..|+.|+|||.|..|.+||...++ +.-..+|...|....|. .+..+++++.||-+++=.+.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 47899999999999999999999999999999997764 34445799999888885 45667899999998876543
Q ss_pred c-Cc---eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CC---CcEEEEecc---CC
Q 019384 90 H-GK---EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QP---ERVYSLSLV---GN 157 (342)
Q Consensus 90 ~-~~---~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~---~~v~~~s~~---~~ 157 (342)
. +. ...+..|.+.|.-++.-|+. ..|+|++.|+.+.-.|++...... .+.... .. ....++..+ .+
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~--~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE--KFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc--eeeeeccCCccceeeeeEecCCCCcc
Confidence 3 22 23467899999999999976 568999999999999998644322 111211 11 233444444 34
Q ss_pred eEEEEEcCCeEEEEeCCCCCCc-----ccccc-----cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh---
Q 019384 158 RLVVATAGRHVNVYDLRNMSQP-----EQRRE-----SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ--- 224 (342)
Q Consensus 158 ~~~~~s~d~~v~iwd~~~~~~~-----~~~~~-----~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~--- 224 (342)
.+++++.|.-+++||.+..... ..... ..-...++|++++.++..+++.-.|..+ ++|.-.-...
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I--YLF~~~~~~G~~p 373 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI--YLFNKSMGDGSEP 373 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce--EEeccccccCCCC
Confidence 7899999999999998764321 01111 1223568899988777777666666654 5564321111
Q ss_pred --------cccceeeeEEecCCCCceeeeeeEEE-EcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384 225 --------AKKYAFKCHRKSEAGRDIVYPVNAIA-FHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 225 --------~~~~~~~~h~~~~~~~~~~~~v~~v~-~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp 295 (342)
......++|+... .|-.|- |.|..+++++||.-|.|.||+-.+++.+.-+.+-..-|+||.-.|
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~-------TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSR-------TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred CCCcchhhccchhhccccccc-------ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 0011134555432 244443 578899999999999999999999998888887777899999999
Q ss_pred CCCEEEEEE
Q 019384 296 DGRLLAVAS 304 (342)
Q Consensus 296 dg~~las~s 304 (342)
---.||+++
T Consensus 447 ~~PvLAsSG 455 (559)
T KOG1334|consen 447 HLPVLASSG 455 (559)
T ss_pred CCchhhccC
Confidence 888888765
No 167
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=1.9e-16 Score=135.96 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=123.7
Q ss_pred CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCce----eeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEEe
Q 019384 16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANV----LRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLVF 88 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~----~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~ 88 (342)
+.|...=+.|+|||- ...|+||..-+-|++|...++. .+.+.+|...|-+++|+| ++-+++||.|++|++||+
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 677777799999993 3458888888999999998764 244557999999999985 445679999999999999
Q ss_pred ccCc---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCc-ceeeeeecCCCCcEEEEeccC---CeEEE
Q 019384 89 SHGK---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-ERTLVGTYPQPERVYSLSLVG---NRLVV 161 (342)
Q Consensus 89 ~~~~---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~-~~~~~~~~~~~~~v~~~s~~~---~~~~~ 161 (342)
+.+. ......|..-|+-|.|+.+-.+|++|+.||+++|||+|.-... +...+..|. ..|.++.+.+ ..|++
T Consensus 288 Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk--~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 288 RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK--APITSIEWHPHEDSVIAA 365 (440)
T ss_pred cCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc--CCeeEEEeccccCceEEe
Confidence 8874 2344789999999999988789999999999999999864322 222233333 4455666653 47888
Q ss_pred EEcCCeEEEEeCCCC
Q 019384 162 ATAGRHVNVYDLRNM 176 (342)
Q Consensus 162 ~s~d~~v~iwd~~~~ 176 (342)
++.|..|.|||+...
T Consensus 366 sg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 366 SGEDNQITIWDLSVE 380 (440)
T ss_pred ccCCCcEEEEEeecc
Confidence 899999999999754
No 168
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.8e-14 Score=134.50 Aligned_cols=284 Identities=20% Similarity=0.194 Sum_probs=187.9
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC--c-e--eeeeeecCCceEEEEEeC-CCCeEEEecCCcEEEEEecc
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA--N-V--LRGEFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSH 90 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~--~-~--~~~~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~ 90 (342)
.|.--+++.++||.++++|+|..||.|.+|.--. . . ....-=|...|.++.|+. +..+++|+..+.+-+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4555589999999999999999999999998643 1 1 222223889999999985 55678999999999999999
Q ss_pred CceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee--e--------cCCCCcEEEEeccCCeEE
Q 019384 91 GKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG--T--------YPQPERVYSLSLVGNRLV 160 (342)
Q Consensus 91 ~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~--~--------~~~~~~v~~~s~~~~~~~ 160 (342)
++...+..-..+|..+.++||++..+....|..|-+-...+-... ..+.+ . ...-.+.+++++..+.++
T Consensus 283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k-~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK-STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh-hhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 987777777889999999999999888889999888754211100 00000 0 011122344555456788
Q ss_pred EEEcCCeEEEEeCCCCCCcccccc---c------ccceeeEEEEEeeCCceEEEEc--------cCCeEEEEEeechhhh
Q 019384 161 VATAGRHVNVYDLRNMSQPEQRRE---S------SLKYQTRCVRCYPNGTGYALSS--------VEGRVAMEFFDLSEAS 223 (342)
Q Consensus 161 ~~s~d~~v~iwd~~~~~~~~~~~~---~------~~~~~~~~v~~~~~~~~~~~~s--------~~~~~~i~~~d~~~~~ 223 (342)
..+..+.|.+||+-+.+....... . .+...++.++.+..|...++.. .++.+.+++|.....
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~- 440 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN- 440 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC-
Confidence 888899999999977544311110 0 1111234455555566665543 356778889987543
Q ss_pred hcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCC------c----eeeeccCCCCcceEEEE
Q 019384 224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNN------K----KRLYQYSKYPTSIAALS 292 (342)
Q Consensus 224 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~------~----~~~~~~~~~~~~V~~v~ 292 (342)
.+.|.+...-...++.. -+..+.++|... +.++++.||.++||-..+ . .+...-.-|..++.+++
T Consensus 441 -~kt~~L~T~I~~PH~~~---~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~ 516 (792)
T KOG1963|consen 441 -SKTFILNTKINNPHGNA---FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC 516 (792)
T ss_pred -cceeEEEEEEecCCCce---eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence 33344443222211111 233344455444 899999999999997632 1 22222223788999999
Q ss_pred ECCCCCEEEEEEec
Q 019384 293 FSRDGRLLAVASSY 306 (342)
Q Consensus 293 ~spdg~~las~s~~ 306 (342)
||.||..|+.+..+
T Consensus 517 fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 517 FSQDGSLLAVSFDD 530 (792)
T ss_pred hcCCCcEEEEecCC
Confidence 99999999877763
No 169
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.6e-15 Score=126.35 Aligned_cols=244 Identities=20% Similarity=0.245 Sum_probs=162.6
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC--eEEEecCCcEEEEEeccCce
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS--GFSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~--~~s~s~D~~i~~w~~~~~~~ 93 (342)
..|-..|.+|+||+||+.|+|+|.|..|++||+..+.+...+....+|+.+.|+|.+. .+.+=.+..-.+-++..+..
T Consensus 62 saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h 141 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH 141 (405)
T ss_pred hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence 4678899999999999999999999999999999888888888899999999986443 33444444445555554443
Q ss_pred eecccCC----cc-eeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccCCeEEEEEcCCe
Q 019384 94 DILGKHD----AP-VRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVGNRLVVATAGRH 167 (342)
Q Consensus 94 ~~~~~h~----~~-V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~~~~~~~s~d~~ 167 (342)
..+.... +. -.+..|.+.|++|++|..-|.+-++|.++.... ..+.... ...+..-++..++.+++.++|+.
T Consensus 142 ~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v--as~rits~~~IK~I~~s~~g~~liiNtsDRv 219 (405)
T KOG1273|consen 142 SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV--ASFRITSVQAIKQIIVSRKGRFLIINTSDRV 219 (405)
T ss_pred eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheee--eeeeechheeeeEEEEeccCcEEEEecCCce
Confidence 3332211 11 123357889999999999999999998764321 1111111 12233457778899999999999
Q ss_pred EEEEeCCCCCCc----cccccccc-----ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384 168 VNVYDLRNMSQP----EQRRESSL-----KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA 238 (342)
Q Consensus 168 v~iwd~~~~~~~----~~~~~~~~-----~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~ 238 (342)
||.|+++..... .....+.+ +.+=+++.|+.+|.+++.++. ..-.+++|....+...+. +.+-+.
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~-~aHaLYIWE~~~GsLVKI--LhG~kg--- 293 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA-RAHALYIWEKSIGSLVKI--LHGTKG--- 293 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc-cceeEEEEecCCcceeee--ecCCch---
Confidence 999998742211 00000111 112346677888888777764 444678998765544333 222111
Q ss_pred CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
.....|.|+|-...+++- ..|.|+||...
T Consensus 294 -----E~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 294 -----EELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred -----hheeecccccceeeeeec-cCCceEEEEee
Confidence 124567899988888887 77899999754
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.2e-15 Score=144.16 Aligned_cols=260 Identities=19% Similarity=0.202 Sum_probs=170.9
Q ss_pred CCCCCccCCCCCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEECCC-----ceeeeee----ec----CCceEEEEEe-C
Q 019384 7 PPTSGRELGNPPSDGISNLRFSNH--SDHLLVSSWDKSVRLYDASA-----NVLRGEF----MH----GGPVLDCCFH-D 70 (342)
Q Consensus 7 ~~~~~~~~~~~~~~~V~~l~fs~~--~~~l~s~s~Dgti~vwd~~~-----~~~~~~~----~h----~~~V~~~~~~-~ 70 (342)
--.+++.+++++...|+.+.+-.+ ..+|++|+.||+||||+-.. .++.+-. ++ .+.-.-+.|. .
T Consensus 1097 ~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~ 1176 (1387)
T KOG1517|consen 1097 RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ 1176 (1387)
T ss_pred ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhh
Confidence 346788888999999999999874 45789999999999999532 2232211 11 1111223454 4
Q ss_pred CCCeEEEecCCcEEEEEeccCce--eecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCccee-eeeecCCC
Q 019384 71 DSSGFSASADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERT-LVGTYPQP 146 (342)
Q Consensus 71 ~~~~~s~s~D~~i~~w~~~~~~~--~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~-~~~~~~~~ 146 (342)
.+.++++|.-..|++||...... .+-.+....|+++.-+. .|+.|+.|..||.||+||.|........ ....+...
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 56677777778899999876552 22334555677765443 4688999999999999999865432111 22333333
Q ss_pred CcEEEEeccC--C-eEEEEEcCCeEEEEeCCCCCCccccccc--cc--ceeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384 147 ERVYSLSLVG--N-RLVVATAGRHVNVYDLRNMSQPEQRRES--SL--KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDL 219 (342)
Q Consensus 147 ~~v~~~s~~~--~-~~~~~s~d~~v~iwd~~~~~~~~~~~~~--~~--~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~ 219 (342)
..|+.+++.. - .+++++.+|.|++||+|..... ..... +- ....+++.+|+....+++|+. +. |++|++
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~--ikIy~~ 1332 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL--IKIYSL 1332 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCccc-ccceeeeccccCccceeeeeccCCCeeeecCc-ce--EEEEec
Confidence 3477777643 2 5999999999999999984211 11111 11 113678889999999999887 44 466888
Q ss_pred hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc
Q 019384 220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK 275 (342)
Q Consensus 220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~ 275 (342)
...... .++.+... .+ ...+.+.|++|||..-+||.|+.|.+|.||...+.
T Consensus 1333 ~G~~l~---~~k~n~~F-~~-q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1333 SGEQLN---IIKYNPGF-MG-QRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred Chhhhc---ccccCccc-cc-CcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 644221 11111111 00 11235789999999989999999999999987654
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=6.7e-14 Score=126.43 Aligned_cols=276 Identities=9% Similarity=0.052 Sum_probs=161.3
Q ss_pred EEEEeCCCcEEEEECCC-ce--eeeeeecCCceEEEEEeCCCCe-EEE-ecCCcEEEEEecc-Cceeecc--cCCcceeE
Q 019384 34 LLVSSWDKSVRLYDASA-NV--LRGEFMHGGPVLDCCFHDDSSG-FSA-SADHTVRRLVFSH-GKEDILG--KHDAPVRC 105 (342)
Q Consensus 34 l~s~s~Dgti~vwd~~~-~~--~~~~~~h~~~V~~~~~~~~~~~-~s~-s~D~~i~~w~~~~-~~~~~~~--~h~~~V~~ 105 (342)
.++...|+.|++||+.+ ++ +.....+.+....+.++++++. +.+ ..++.|..|+++. +...... ........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 44557899999999963 33 3344445567778899987765 444 3577888898863 2222111 12234678
Q ss_pred EEEeCCCCEEEEeeC-CCcEEEEcCCCCCCcceeeeeecCC--CCcEEEEeccCCeEEEE-EcCCeEEEEeCCCCCCccc
Q 019384 106 IEYSYAAGQVITGSW-DKSLKCWDPRGASGQERTLVGTYPQ--PERVYSLSLVGNRLVVA-TAGRHVNVYDLRNMSQPEQ 181 (342)
Q Consensus 106 ~~~~~~~~~l~sgs~-D~~I~iWd~~~~~~~~~~~~~~~~~--~~~v~~~s~~~~~~~~~-s~d~~v~iwd~~~~~~~~~ 181 (342)
++|+|+++.|++++. ++.|.+||++..... ......... ......++.+++.++++ ..++.|.+||+.+......
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~-~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIP-VAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCC-CCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999998877654 789999998632211 011111111 11223466666676554 4558999999976322110
Q ss_pred ----ccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcc--cceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384 182 ----RRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAK--KYAFKCHRKSEAGRDIVYPVNAIAFHPI 254 (342)
Q Consensus 182 ----~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~--~~~~~~h~~~~~~~~~~~~v~~v~~sp~ 254 (342)
............+.++|+++.+++... ++++ .+|++....... ...+..+.... ........+.|+|+
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v--~v~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~i~~~pd 238 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSV--DVWQLKDPHGEIECVQTLDMMPADF---SDTRWAADIHITPD 238 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEE--EEEEEeCCCCCEEEEEEEecCCCcC---CCCccceeEEECCC
Confidence 001111223457889999998877765 5554 557764221111 11111111100 00011235889999
Q ss_pred CCeEEEec-CCCeEEEEeCCCce----eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384 255 YGTFATGG-CDGFVNVWDGNNKK----RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN 326 (342)
Q Consensus 255 ~~~l~sgs-~Dg~I~iWd~~~~~----~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~ 326 (342)
+++|+++. .+++|.+|+++... .+..... ......++|+|||++|+++.... +.|.+|+++
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~----------~~v~v~~~~ 304 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKS----------HHISVYEID 304 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccC----------CcEEEEEEc
Confidence 99888774 57899999985432 2222211 12456899999999999876422 147777664
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=128.92 Aligned_cols=252 Identities=18% Similarity=0.247 Sum_probs=152.3
Q ss_pred CCccCC--CCCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEECCCce---eeeeeecCC-ceEEEEEeCCCCeEEEec--
Q 019384 10 SGRELG--NPPSDGISNLRFSN--HSDHLLVSSWDKSVRLYDASANV---LRGEFMHGG-PVLDCCFHDDSSGFSASA-- 79 (342)
Q Consensus 10 ~~~~~~--~~~~~~V~~l~fs~--~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~-~V~~~~~~~~~~~~s~s~-- 79 (342)
+|.-|. ..++..++.++|.. ....+.||+.||+||+||+.... .+..-++.+ +-.+++-.-...++.++.
T Consensus 59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~ 138 (376)
T KOG1188|consen 59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL 138 (376)
T ss_pred chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc
Confidence 344444 46677788889988 45778899999999999997643 222223442 333444433455555553
Q ss_pred ---CCcEEEEEeccCce---eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384 80 ---DHTVRRLVFSHGKE---DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL 152 (342)
Q Consensus 80 ---D~~i~~w~~~~~~~---~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~ 152 (342)
|-.+.+||++.... .....|.+-|+++.|+|.. ++|+|||.||-|.++|+... .+.-..+....+...|-.+
T Consensus 139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d-~EeDaL~~viN~~sSI~~i 217 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD-NEEDALLHVINHGSSIHLI 217 (376)
T ss_pred ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC-cchhhHHHhhcccceeeee
Confidence 34588999987654 2457899999999999965 78999999999999998643 2221222222333334444
Q ss_pred eccC---CeEEEEEcCCeEEEEeCCCCCCcccccccc------------cceeeEEEEEeeC-CceEEEEcc-CCeEEEE
Q 019384 153 SLVG---NRLVVATAGRHVNVYDLRNMSQPEQRRESS------------LKYQTRCVRCYPN-GTGYALSSV-EGRVAME 215 (342)
Q Consensus 153 s~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~------------~~~~~~~v~~~~~-~~~~~~~s~-~~~~~i~ 215 (342)
-+.+ +.|.+-+-.++..+|++..++. ......+ ..+.+.+ .+|. ....+++.. -++..+.
T Consensus 218 gw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~d~r~~~~~dY~I~~--~~~~~~~~~~l~g~~~n~~~~~ 294 (376)
T KOG1188|consen 218 GWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSADDLRKEDNCDYVINE--HSPGDKDTCALAGTDSNKGTIF 294 (376)
T ss_pred eeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhhhHHhhhhhhheeec--ccCCCcceEEEeccccCceeEE
Confidence 4443 3677888889999999987652 2211111 1111221 1233 333444433 4444443
Q ss_pred Eeec-hhhh-hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 216 FFDL-SEAS-QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 216 ~~d~-~~~~-~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
.+.. .... ......+.++ +...|+++.|...+.++.||++||.+.+|..+
T Consensus 295 ~~~~~~s~~~~~~~a~l~g~--------~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 295 PLVDTSSGSLLTEPAILQGG--------HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred EeeecccccccCccccccCC--------cHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 3331 1111 1111222221 11247888888889999999999999999853
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.69 E-value=5.7e-15 Score=122.90 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=118.4
Q ss_pred CCCCeEEEEEcCCC-CeEEEEeCC-------CcEEEEECCCcee---------eeee--ecCCceEEEEEeCCCCeEEEe
Q 019384 18 PSDGISNLRFSNHS-DHLLVSSWD-------KSVRLYDASANVL---------RGEF--MHGGPVLDCCFHDDSSGFSAS 78 (342)
Q Consensus 18 ~~~~V~~l~fs~~~-~~l~s~s~D-------gti~vwd~~~~~~---------~~~~--~h~~~V~~~~~~~~~~~~s~s 78 (342)
|.+.|+.|+-+|-. +.|+|+-.| -.+.||.+....- ...+ .+-+.|.|+.|.|++..+.+-
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM 141 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence 46789999989854 455554332 3477999854221 1111 245689999999887777777
Q ss_pred cCCcEEEEEeccCcee---e----cccCCcceeEEEEeC--CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcE
Q 019384 79 ADHTVRRLVFSHGKED---I----LGKHDAPVRCIEYSY--AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERV 149 (342)
Q Consensus 79 ~D~~i~~w~~~~~~~~---~----~~~h~~~V~~~~~~~--~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v 149 (342)
.|..|.+|+++..... + -.+|+...++-+|+| +++.+++. .|++++.||+|+..+.. .+ ...+.+.+
T Consensus 142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~--sI-~dAHgq~v 217 (370)
T KOG1007|consen 142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN--SI-EDAHGQRV 217 (370)
T ss_pred ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc--ch-hhhhccee
Confidence 8999999999876542 1 124667788999999 66777765 58999999998643321 11 12244567
Q ss_pred EEEeccCC---eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC
Q 019384 150 YSLSLVGN---RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN 199 (342)
Q Consensus 150 ~~~s~~~~---~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 199 (342)
..++++++ .+++|+.|+.|+|||.|+.+.+...+. .+...+.+|.|.|.
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPE 269 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCc
Confidence 78888876 688999999999999998755543221 22233445555443
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4.3e-16 Score=140.02 Aligned_cols=247 Identities=19% Similarity=0.234 Sum_probs=155.7
Q ss_pred eeeecCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCc---------eeecccCCcceeEEEEeCCCCEEEEeeCCCcE
Q 019384 55 GEFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGK---------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124 (342)
Q Consensus 55 ~~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~---------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I 124 (342)
+...|.+.|....|.+ ...+++|+.|+++++|.+.... ...+++|.++|.|+++.+.++.++||+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 3446888899999974 4567899999999999993221 12578999999999999999999999999999
Q ss_pred EEEcCCCC----C-Ccceeeeeec-CCCCcE--EEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEE
Q 019384 125 KCWDPRGA----S-GQERTLVGTY-PQPERV--YSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRC 196 (342)
Q Consensus 125 ~iWd~~~~----~-~~~~~~~~~~-~~~~~v--~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 196 (342)
+.|++-.. . .......+.. .++..+ +.++...+.++++++||++++|+...... .......-.....++.+
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 99954310 0 0000111111 233344 34455567899999999999999876532 11111110111223322
Q ss_pred eeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce
Q 019384 197 YPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK 276 (342)
Q Consensus 197 ~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~ 276 (342)
-.......+.+. . ..++++..........+...... .+......++-+..+|.+.+.+++.+|+.|+++|..+++
T Consensus 448 ~ss~~a~~~~s~--~--~~~~~~~~~ev~s~~~~~~s~~~-~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 448 TSSRPAHSLASF--R--FGYTSIDDMEVVSDLLIFESSAS-PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ccchhHhhhhhc--c--cccccchhhhhhhheeeccccCC-CcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 221111111111 1 11122111111111111000000 000000136778889999999999999999999999999
Q ss_pred eeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 277 RLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 277 ~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.+.....|...+.++++-|.|-+|++++.+.
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCc
Confidence 9999999999999999999999999998766
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.5e-16 Score=151.91 Aligned_cols=241 Identities=17% Similarity=0.226 Sum_probs=169.3
Q ss_pred CCCeEEEEEcCCCCe----EEEEeCCCcEEEEECCC----ce---eeeeeecCCceEEEEEeCCC--CeEEEecCCcEEE
Q 019384 19 SDGISNLRFSNHSDH----LLVSSWDKSVRLYDASA----NV---LRGEFMHGGPVLDCCFHDDS--SGFSASADHTVRR 85 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~----l~s~s~Dgti~vwd~~~----~~---~~~~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~~ 85 (342)
....+.|+|.+.+.. ||.|..||.|.+||... .+ +.+...|.|.|.++.|.+.. .+++|+.||.|.+
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 457889999998766 88899999999999754 11 34445799999999998543 4678999999999
Q ss_pred EEeccCceee-cc--cCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC---e
Q 019384 86 LVFSHGKEDI-LG--KHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN---R 158 (342)
Q Consensus 86 w~~~~~~~~~-~~--~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~---~ 158 (342)
||+.+.+... .. .-.+.|.+++|+..- ..|++++.++++-|||++..... ..+.....-..+-.+.++++ .
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi--i~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI--IKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc--cccccCCCccceeeeeeCCCCcee
Confidence 9998855332 21 234679999999754 46789999999999999854221 11211111122345666654 6
Q ss_pred EEEEEcCC---eEEEEeCCCCCCcccccccccceeeEEEEEeeCC-ceEEEEccCCeEEEEEeechhhhhcccceeeeEE
Q 019384 159 LVVATAGR---HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG-TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234 (342)
Q Consensus 159 ~~~~s~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~ 234 (342)
+++++.|. .|.+||+|....+.+... .+..-+.++.|.+.+ ..++++..|+++. +|+..+......+ ...
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsWc~~D~~lllSsgkD~~ii--~wN~~tgEvl~~~--p~~- 295 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSWCPQDPRLLLSSGKDNRII--CWNPNTGEVLGEL--PAQ- 295 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhc-ccccceeeeccCCCCchhhhcccCCCCee--EecCCCceEeeec--CCC-
Confidence 88888886 499999998766655443 233347788888877 5667777888764 5888654332221 110
Q ss_pred ecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCc
Q 019384 235 KSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNK 275 (342)
Q Consensus 235 ~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~ 275 (342)
...+..+.|+|... .++.++.||.|-||.++..
T Consensus 296 --------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 296 --------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred --------CcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 11467789999876 6788999999999998754
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=5.2e-14 Score=120.87 Aligned_cols=243 Identities=20% Similarity=0.277 Sum_probs=151.5
Q ss_pred ceEEEEEeCCCCeEE-EecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCC--cEEEEcCCCCCCccee
Q 019384 62 PVLDCCFHDDSSGFS-ASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDK--SLKCWDPRGASGQERT 138 (342)
Q Consensus 62 ~V~~~~~~~~~~~~s-~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~--~I~iWd~~~~~~~~~~ 138 (342)
.+....|..+..+++ |+.|| .+++..+.-.. ....-...+.=+..--...+++-.+.+. .+++.+++....
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~---- 80 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT---- 80 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCce----
Confidence 345555766666665 44444 34554332211 1111112222222222345666555554 488888764322
Q ss_pred eeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccc-eeeEEEEEeeCCceEEEEccCCeEEEEEe
Q 019384 139 LVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK-YQTRCVRCYPNGTGYALSSVEGRVAMEFF 217 (342)
Q Consensus 139 ~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~~i~~~ 217 (342)
+=...-+..+.++-++.++++++-.+. |.|||+++.+........+.+ .....++.++.+.+++.-+.-..-.+.+|
T Consensus 81 -ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 81 -ICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred -EEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 111223456788888889998888775 999999998654433322111 11333444444556655443333345679
Q ss_pred echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe-EEEEeCCCceeeeccCCC--CcceEEEEEC
Q 019384 218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF-VNVWDGNNKKRLYQYSKY--PTSIAALSFS 294 (342)
Q Consensus 218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~-I~iWd~~~~~~~~~~~~~--~~~V~~v~~s 294 (342)
|...... ...+.+|.. ++.+++|+|+|.+|||+|+.|+ |||+.+.+++.+.+|..- ...|.+++|+
T Consensus 159 d~~nl~~--v~~I~aH~~---------~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 159 DTINLQP--VNTINAHKG---------PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred Eccccee--eeEEEecCC---------ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 9854322 234567764 6999999999999999999997 899999999999887633 4578999999
Q ss_pred CCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCccccCCC
Q 019384 295 RDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPK 335 (342)
Q Consensus 295 pdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (342)
||+++|++.|..+ .|=++++++-. .++++
T Consensus 228 ~ds~~L~~sS~Te-----------TVHiFKL~~~~-~~~~~ 256 (391)
T KOG2110|consen 228 PDSQFLAASSNTE-----------TVHIFKLEKVS-NNPPE 256 (391)
T ss_pred CCCCeEEEecCCC-----------eEEEEEecccc-cCCCC
Confidence 9999999888765 68888887644 55555
No 177
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=6.9e-16 Score=138.29 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=122.7
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeC---CCCeEEEecCCcEEEEEecc
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHD---DSSGFSASADHTVRRLVFSH 90 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~---~~~~~s~s~D~~i~~w~~~~ 90 (342)
.+|.+-|++|.|+.+|..|+|||.|-.+.|||....+++..+ +|.+.|.++.|.| +..+++|+.|..|+++|+..
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 689999999999999999999999999999999876666554 7999999999964 44567999999999999975
Q ss_pred Cce-----------eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCccee-----eeeec-C--CCCcEE
Q 019384 91 GKE-----------DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERT-----LVGTY-P--QPERVY 150 (342)
Q Consensus 91 ~~~-----------~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~-----~~~~~-~--~~~~v~ 150 (342)
.+. ..+.-|+..|..++..|++ ..|.+++.||+|+-+|++..+..... .+..+ . ...+.+
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence 332 1345699999999999988 78899999999999999854321110 01111 0 112233
Q ss_pred EEec-cCCeEEEEEcCCeEEEEeCCC
Q 019384 151 SLSL-VGNRLVVATAGRHVNVYDLRN 175 (342)
Q Consensus 151 ~~s~-~~~~~~~~s~d~~v~iwd~~~ 175 (342)
.+++ .+..+++|+.|--.++||.|.
T Consensus 207 tisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eecCCCCceEEecCCCchhhhhhhhh
Confidence 4454 356889999998999999764
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4.3e-15 Score=142.17 Aligned_cols=272 Identities=19% Similarity=0.225 Sum_probs=176.4
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee----cCCceEEEEEe---CCCCeEEEecCCcEEEEEeccC---c
Q 019384 23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM----HGGPVLDCCFH---DDSSGFSASADHTVRRLVFSHG---K 92 (342)
Q Consensus 23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~----h~~~V~~~~~~---~~~~~~s~s~D~~i~~w~~~~~---~ 92 (342)
..+.|+|=...++++...-+|+|||...++...-+. ....|+.+++. +...+++|+.||.||+|.-... +
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence 457888888899988877899999998776544332 23468888885 2335679999999999975332 1
Q ss_pred eee------cccCC----cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeE
Q 019384 93 EDI------LGKHD----APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRL 159 (342)
Q Consensus 93 ~~~------~~~h~----~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~ 159 (342)
.++ +.++. +.=.-++|.+..+.|++++.-..|||||............ .....+.+++.+ ++.+
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~---~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY---GSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc---CCCccceeecccccCCceE
Confidence 111 12211 1112357777777888887789999999864322111111 122334555543 6789
Q ss_pred EEEEcCCeEEEEeCCCCCCc--cccc-ccccceeeEEEEEeeCCce-EEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384 160 VVATAGRHVNVYDLRNMSQP--EQRR-ESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK 235 (342)
Q Consensus 160 ~~~s~d~~v~iwd~~~~~~~--~~~~-~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~ 235 (342)
+.|.+||.|++||.|..... .... .+.-...+..+.+-+.|-. +++++.+|++ ++||++.....-...+..|.+
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I--~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI--QLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE--EEEecccCcccccceeeeccc
Confidence 99999999999999875331 1111 1111112455556665544 8899999986 569998643322334444443
Q ss_pred cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce--eeec---cCC-CCcceEEEEECCCCCEEEEEEec
Q 019384 236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK--RLYQ---YSK-YPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~--~~~~---~~~-~~~~V~~v~~spdg~~las~s~~ 306 (342)
.. ..++++..|+....+|+|+. +.|+||++.... .++. +.+ ..+.+.|++|.|-.-+||+|+.+
T Consensus 1303 yG------s~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1303 YG------SALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred cC------ccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence 21 13789999999999999999 999999986422 1221 111 23467999999999999988543
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=7.4e-13 Score=121.43 Aligned_cols=271 Identities=24% Similarity=0.332 Sum_probs=184.0
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeC-CCcEEEEECCCceee-eeeecCCceEEEEEeCCCC-eE-EEecCCcEEEEEeccC
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSW-DKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSS-GF-SASADHTVRRLVFSHG 91 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~-Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~-~~-s~s~D~~i~~w~~~~~ 91 (342)
..|...|..++|+|++..+++++. |+++++|+...+... ....|...|.++.|.+++. ++ +++.|+.+++|+...+
T Consensus 152 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 678899999999999999988885 999999999875433 4445899999999997765 44 4489999999987755
Q ss_pred cee--ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCe
Q 019384 92 KED--ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRH 167 (342)
Q Consensus 92 ~~~--~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~ 167 (342)
... .+.+|...+ ...|++++..+++++.|+.+++||.+.... ..... ..+...+.++.+. +..+++++.|+.
T Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 232 KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEEE--ecCCccEEEEEECCCCCEEEEeeCCCc
Confidence 543 477888775 448999888889999999999999875433 11111 2233445555554 467777888888
Q ss_pred EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384 168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV 246 (342)
Q Consensus 168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v 246 (342)
+++||+.+...............+..+.+.+++..+..+ ..++.+ .+|+..... ... .... ...+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~--~~~---~~~~-------~~~~ 373 (466)
T COG2319 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI--RLWDLRTGK--PLK---TLEG-------HSNV 373 (466)
T ss_pred EEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE--EeeecCCCc--eeE---EecC-------CceE
Confidence 999998876433222201111234555562332445555 455443 447765432 111 0000 0126
Q ss_pred eEEEEcCCCCeEEE-ecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 247 NAIAFHPIYGTFAT-GGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 247 ~~v~~sp~~~~l~s-gs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
..+.+++ ...+.. +..++.+.+|+............+...+....+++++.++++++.
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432 (466)
T ss_pred EEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecC
Confidence 7788888 544444 789999999999887766555444378999999999999988544
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=5e-15 Score=135.59 Aligned_cols=235 Identities=14% Similarity=0.230 Sum_probs=164.1
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCcee
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKED 94 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~ 94 (342)
.+|.+-|++|+|+.||.++|||+.|+.|.||..+-..+ -.+.|.+.|.|+.|.|-.+. ++|+- ...-+|..+++...
T Consensus 50 KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~ 127 (1081)
T KOG1538|consen 50 KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS 127 (1081)
T ss_pred ccccceEEEEEEccCCceeccCCCceeEEEecccccce-eeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH
Confidence 68999999999999999999999999999998754322 23569999999999876654 45554 33446765554322
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccC-------CeEEEEEcCC
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVG-------NRLVVATAGR 166 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~-------~~~~~~s~d~ 166 (342)
.. .....|.+|+|+.||++|+-|-.||||.+-+.. +++...+.... ....+.++.+++ +.++++--+.
T Consensus 128 K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~---gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q 203 (1081)
T KOG1538|consen 128 KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN---GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ 203 (1081)
T ss_pred hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCC---CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence 11 123568899999999999999999999987643 22222233221 123455555432 3677778888
Q ss_pred eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384 167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV 246 (342)
Q Consensus 167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v 246 (342)
++.++.+...... ....+.+...|++..++|.++++|+.++...+ |.-. ..+.-.+ + +....|
T Consensus 204 TLSFy~LsG~~Ig---k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~--fTR~---GvrLGTv--------g-~~D~WI 266 (1081)
T KOG1538|consen 204 TLSFYQLSGKQIG---KDRALNFDPCCISYFTNGEYILLGGSDKQLSL--FTRD---GVRLGTV--------G-EQDSWI 266 (1081)
T ss_pred eeEEEEecceeec---ccccCCCCchhheeccCCcEEEEccCCCceEE--Eeec---CeEEeec--------c-ccceeE
Confidence 8998888643211 12245567889999999999999999887543 4321 1111000 0 112379
Q ss_pred eEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 247 NAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
.+|+.+|+++.++.|..||+|-.|++.
T Consensus 267 WtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999999999999999999999864
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=5.6e-15 Score=132.18 Aligned_cols=259 Identities=18% Similarity=0.169 Sum_probs=163.1
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe---------CCCCeEEEecCCcEEEE
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH---------DDSSGFSASADHTVRRL 86 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~---------~~~~~~s~s~D~~i~~w 86 (342)
|.|..-|-++.|+.....+.+++.+.-++-||+.+...........-|....+. ....++.++.||.+.+.
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 467777889999988766655544444444455432211101111112111111 12346789999998877
Q ss_pred EeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384 87 VFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR 166 (342)
Q Consensus 87 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~ 166 (342)
.-..+-+..+..|.++|.|-.|+|||.-|+|++.||.||+|.. + +..+..+........+..+.++.+.++.+.+ +
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-s--GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~ 166 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-S--GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-G 166 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-c--chHHHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence 6554446678899999999999999999999999999999973 2 3233333332223333344445555655544 4
Q ss_pred eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384 167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV 246 (342)
Q Consensus 167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v 246 (342)
.+.|=-+.....+.+.. ++.+-+.|+.|++..+.+++++.|-+. ++||.-. ...+. ...+.+||
T Consensus 167 h~~IKpL~~n~k~i~Wk--AHDGiiL~~~W~~~s~lI~sgGED~kf--KvWD~~G---~~Lf~---------S~~~ey~I 230 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWR--AHDGLVLSLSWSTQSNIIASGGEDFRF--KIWDAQG---ANLFT---------SAAEEYAI 230 (737)
T ss_pred eEEEeecccccceeEEe--ccCcEEEEeecCccccceeecCCceeE--EeecccC---ccccc---------CChhccce
Confidence 55555554433333322 344567899999999988888877654 6699632 12222 22345689
Q ss_pred eEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
++++|.|+ +.++.+|.. ++|+ -+...+.|..++|||||..++.|++.+
T Consensus 231 TSva~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eeeeeccc-cceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCc
Confidence 99999999 667776643 4441 123457899999999999999988743
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.1e-14 Score=136.04 Aligned_cols=235 Identities=11% Similarity=0.040 Sum_probs=151.8
Q ss_pred CCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecC---CcEEEEEeccCceeecccCCcceeEEEEeCCCCE
Q 019384 39 WDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASAD---HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ 114 (342)
Q Consensus 39 ~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D---~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 114 (342)
.+..|.|||......+....|...+.+..|+|+++. +.++.+ ..|.+|++.+++...+........+++|+||++.
T Consensus 182 ~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 182 QPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred ceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 357999999987665555567888999999988765 455543 3589999987764433322233446899999998
Q ss_pred EEEe-eCCCcEEEE--cCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEE-cCCeEEEEeCCCCCCccccccccccee
Q 019384 115 VITG-SWDKSLKCW--DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVAT-AGRHVNVYDLRNMSQPEQRRESSLKYQ 190 (342)
Q Consensus 115 l~sg-s~D~~I~iW--d~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~ 190 (342)
|+.+ +.|+.+.|| |+.++. . ..+...........++++++.++.++ .++..++|++........... ...
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~--~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--~~~- 335 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGT--P-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--GRG- 335 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCC--e-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--CCC-
Confidence 8765 468877666 554322 1 12222222233456777777777655 457788887654222111111 111
Q ss_pred eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEE
Q 019384 191 TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW 270 (342)
Q Consensus 191 ~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iW 270 (342)
.+..++|+++.++..+.++ +..||..+..... +..+. ....++|+|+|++|+.++.++.+.+|
T Consensus 336 -~~~~~SpDG~~ia~~~~~~---i~~~Dl~~g~~~~---lt~~~----------~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN---VVKQDLTSGSTEV---LSSTF----------LDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC---EEEEECCCCCeEE---ecCCC----------CCCCceECCCCCEEEEEEcCCCceEE
Confidence 3456899999988776643 3457875432111 11000 12356899999999999999998888
Q ss_pred eCC--CceeeeccCCCCcceEEEEECCC
Q 019384 271 DGN--NKKRLYQYSKYPTSIAALSFSRD 296 (342)
Q Consensus 271 d~~--~~~~~~~~~~~~~~V~~v~~spd 296 (342)
.+. +++.++.+..|.+.+...+|||-
T Consensus 399 ~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEECCCCceEEccCCCCCCCCcccCCC
Confidence 753 56778888888888999999984
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=1.3e-13 Score=129.13 Aligned_cols=272 Identities=17% Similarity=0.149 Sum_probs=176.1
Q ss_pred CCcEEEEECCCc-eeeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEEeccCcee-------ecccCCcceeEEEEe
Q 019384 40 DKSVRLYDASAN-VLRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLVFSHGKED-------ILGKHDAPVRCIEYS 109 (342)
Q Consensus 40 Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~~~~~~~-------~~~~h~~~V~~~~~~ 109 (342)
++.+.||++... .....+.-...|.+++|++ ...++.|+.+|.|.+||+...... ....|..++..+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 357999999775 3334445678899999984 345568889999999999876642 234688999999998
Q ss_pred CCCC--EEEEeeCCCcEEEEcCCCCCCcc-eeeeeec-------CCCCcEEEEec---cCCeEEEEEcCCeEEEEeCCCC
Q 019384 110 YAAG--QVITGSWDKSLKCWDPRGASGQE-RTLVGTY-------PQPERVYSLSL---VGNRLVVATAGRHVNVYDLRNM 176 (342)
Q Consensus 110 ~~~~--~l~sgs~D~~I~iWd~~~~~~~~-~~~~~~~-------~~~~~v~~~s~---~~~~~~~~s~d~~v~iwd~~~~ 176 (342)
++-. .|+++|.||.|+.|+++.-.... ....... .....+.++.+ +++.+++|+..|.|.--+-...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 7543 49999999999999987432211 1111111 11222344444 4678999999998765332222
Q ss_pred CCcc------cccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384 177 SQPE------QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250 (342)
Q Consensus 177 ~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 250 (342)
.... +.......+.+..+.+.|=+..+...+.|..++ +|...-...+ .+.+..+. ..|.+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vr--iWs~~~~~~P-l~~~~~~~---------~~v~~va 448 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVR--IWSEDVIASP-LLSLDSSP---------DYVTDVA 448 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeE--eccccCCCCc-chhhhhcc---------ceeeeeE
Confidence 1111 000111224467777777666555555576665 5776411111 11122221 1488999
Q ss_pred EcCCCC-eEEEecCCCeEEEEeCCC--ceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384 251 FHPIYG-TFATGGCDGFVNVWDGNN--KKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE 327 (342)
Q Consensus 251 ~sp~~~-~l~sgs~Dg~I~iWd~~~--~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
|||... .++++..||.|.+||+.. ...+.+..-.....+.+.|++.|+.|+.|...+ .+.++++++
T Consensus 449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G-----------~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG-----------TTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC-----------cEEEEEcCc
Confidence 999866 568888999999999863 334444444455678899999999999998777 588898987
Q ss_pred CccccCC
Q 019384 328 IEVKPKP 334 (342)
Q Consensus 328 ~~~~~~~ 334 (342)
--.+|.+
T Consensus 518 ~l~~~~~ 524 (555)
T KOG1587|consen 518 SLAVPSP 524 (555)
T ss_pred hhhccCc
Confidence 5555555
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=2.4e-15 Score=136.89 Aligned_cols=159 Identities=20% Similarity=0.249 Sum_probs=119.3
Q ss_pred CCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCcee--------eeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEE
Q 019384 19 SDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVL--------RGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLV 87 (342)
Q Consensus 19 ~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~--------~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~ 87 (342)
...|+.+.|+| |..+||.++.||.|+||.+..+.+ .-...|...|+++.|+| .+.++++++|.+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 46799999999 788999999999999999854321 12336999999999985 45678999999999999
Q ss_pred eccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384 88 FSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR 166 (342)
Q Consensus 88 ~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~ 166 (342)
+.+... ..+.+|++.|..++|+|+|++++|.+.||+|++|..++.....+.--+-...-...+-+..++..+++.+-|+
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 998874 4689999999999999999999999999999999988654311110000011111234566777777666664
Q ss_pred ----eEEEEeCCCCC
Q 019384 167 ----HVNVYDLRNMS 177 (342)
Q Consensus 167 ----~v~iwd~~~~~ 177 (342)
.|.+||..+..
T Consensus 787 ~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLD 801 (1012)
T ss_pred cchhhhhhhhhhhcc
Confidence 47888876643
No 185
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=6.9e-14 Score=117.46 Aligned_cols=209 Identities=15% Similarity=0.269 Sum_probs=136.9
Q ss_pred cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec----cCCeEEEEEcCCeEEEE
Q 019384 96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL----VGNRLVVATAGRHVNVY 171 (342)
Q Consensus 96 ~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~----~~~~~~~~s~d~~v~iw 171 (342)
..+|.+-|.++.|.+-|++++|||.|++|+|||.+..++.-.....-..+...+..+.+ .|..+++++.|++++||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35788999999999999999999999999999976554432111110113344555555 35689999999999999
Q ss_pred eCCCC--CCc-----ccccccccceeeEEEEEeeCC--ceEEEEccCCeEEEEEeechhhhhcccceeeeEEec---CCC
Q 019384 172 DLRNM--SQP-----EQRRESSLKYQTRCVRCYPNG--TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS---EAG 239 (342)
Q Consensus 172 d~~~~--~~~-----~~~~~~~~~~~~~~v~~~~~~--~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~---~~~ 239 (342)
.-... +.. ........+..++.|.|.|.. -.+++++.||.++ +|+..+......|.+....+. ..+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR--IYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR--IYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEE--EEecCCccccccchhhhhhhhccCCcc
Confidence 86321 110 001111233457788888864 4567788888765 477655544444444321110 000
Q ss_pred CceeeeeeEEEEcCC---CCeEEEecCC-----CeEEEEeCCCc----eeeeccCCCCcceEEEEECCC----CCEEEEE
Q 019384 240 RDIVYPVNAIAFHPI---YGTFATGGCD-----GFVNVWDGNNK----KRLYQYSKYPTSIAALSFSRD----GRLLAVA 303 (342)
Q Consensus 240 ~~~~~~v~~v~~sp~---~~~l~sgs~D-----g~I~iWd~~~~----~~~~~~~~~~~~V~~v~~spd----g~~las~ 303 (342)
. ..-+..||.|+|. .++||.|+.+ +.++||..... ..+.++.+|+.+|++++|.|. -++||++
T Consensus 167 ~-~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 K-NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred c-ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 0 1114668888875 3578888866 48899975432 345688899999999999995 4588888
Q ss_pred Eecc
Q 019384 304 SSYT 307 (342)
Q Consensus 304 s~~~ 307 (342)
+.++
T Consensus 246 ~kDg 249 (361)
T KOG2445|consen 246 TKDG 249 (361)
T ss_pred ecCc
Confidence 8775
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=2.1e-13 Score=127.86 Aligned_cols=246 Identities=15% Similarity=0.165 Sum_probs=157.9
Q ss_pred CCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCcee-------eeeeecCCceEEEEEeC---CCCeEEEecCCcE
Q 019384 15 GNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVL-------RGEFMHGGPVLDCCFHD---DSSGFSASADHTV 83 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~-------~~~~~h~~~V~~~~~~~---~~~~~s~s~D~~i 83 (342)
.-.....|+++.|+| +.++||.|+++|.|-+||+..+.. ...-.|..+|+.+.|.. +..++++|.||.|
T Consensus 238 ~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 238 VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI 317 (555)
T ss_pred EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence 334567999999999 677888999999999999976432 12235889999999962 2347899999999
Q ss_pred EEEEeccCce---eec---ccC-------CcceeEEEEeCCC-CEEEEeeCCCcEEE---EcCCCCCCcceeee-eecCC
Q 019384 84 RRLVFSHGKE---DIL---GKH-------DAPVRCIEYSYAA-GQVITGSWDKSLKC---WDPRGASGQERTLV-GTYPQ 145 (342)
Q Consensus 84 ~~w~~~~~~~---~~~---~~h-------~~~V~~~~~~~~~-~~l~sgs~D~~I~i---Wd~~~~~~~~~~~~-~~~~~ 145 (342)
..|+++.-.. ..+ ..| ...+++++|.+.. ..|+.|+.+|.|.. ++.+.......... ....+
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h 397 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH 397 (555)
T ss_pred eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc
Confidence 9997654321 111 111 2458899998844 67899999998865 23322110000011 11123
Q ss_pred CCcEEEEecc--C-CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEccCCeEEEEEeechh
Q 019384 146 PERVYSLSLV--G-NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSE 221 (342)
Q Consensus 146 ~~~v~~~s~~--~-~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~ 221 (342)
...+.++..+ . ..+++++ |-+++||.......+........ ..+..++|+|.... |+++..+|.+ .+||+..
T Consensus 398 ~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~-~~v~~vaWSptrpavF~~~d~~G~l--~iWDLl~ 473 (555)
T KOG1587|consen 398 IGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP-DYVTDVAWSPTRPAVFATVDGDGNL--DIWDLLQ 473 (555)
T ss_pred CcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc-ceeeeeEEcCcCceEEEEEcCCCce--ehhhhhc
Confidence 3445555544 3 3455555 99999998763333433332222 23788999998764 4555667765 5699865
Q ss_pred hhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 222 ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 222 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
....-......+ ....+.+.+++.|+.|+.|...|++++|++.
T Consensus 474 ~~~~Pv~s~~~~---------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 474 DDEEPVLSQKVC---------SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccCCccccccc---------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 432221111111 1245667888889999999999999999985
No 187
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.8e-14 Score=128.44 Aligned_cols=237 Identities=16% Similarity=0.154 Sum_probs=161.7
Q ss_pred eeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCE-EEEeeCCCcEEEEcCCCCC
Q 019384 56 EFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGAS 133 (342)
Q Consensus 56 ~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~ 133 (342)
..+|.+.|.++...+.+.+ ++|+.||++++|.+.++++.......+.|.|++|+|.+.. ++..+.+..+.|-+..-++
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 3479999999999877765 5899999999999999986544445568999999997653 3444444445554432110
Q ss_pred Ccc----eee---------------e--------------eecCCCCcEEEEecc--CCeEEEEEcCC---eEEEEeCCC
Q 019384 134 GQE----RTL---------------V--------------GTYPQPERVYSLSLV--GNRLVVATAGR---HVNVYDLRN 175 (342)
Q Consensus 134 ~~~----~~~---------------~--------------~~~~~~~~v~~~s~~--~~~~~~~s~d~---~v~iwd~~~ 175 (342)
... ... . ....+...+..+++. |++|++...++ .|.|.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 000 000 0 001122334455553 67888876653 588888865
Q ss_pred CCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC
Q 019384 176 MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY 255 (342)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~ 255 (342)
.... ..-...++.+.++.|+|...++++++.. .+++||+......++. +.+ ...|..++.||.|
T Consensus 556 ~~sQ--~PF~kskG~vq~v~FHPs~p~lfVaTq~---~vRiYdL~kqelvKkL-~tg----------~kwiS~msihp~G 619 (733)
T KOG0650|consen 556 RKSQ--SPFRKSKGLVQRVKFHPSKPYLFVATQR---SVRIYDLSKQELVKKL-LTG----------SKWISSMSIHPNG 619 (733)
T ss_pred cccc--CchhhcCCceeEEEecCCCceEEEEecc---ceEEEehhHHHHHHHH-hcC----------CeeeeeeeecCCC
Confidence 4321 1111234567889999999888887753 3567998654333221 111 1258899999999
Q ss_pred CeEEEecCCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCCCCEEEEEEeccc
Q 019384 256 GTFATGGCDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF 308 (342)
Q Consensus 256 ~~l~sgs~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~ 308 (342)
..|+.|+.|+.+..+|++-. +..+++.-|...|.+|+|.+.-.++|+|+.++.
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 99999999999999998743 566788889999999999999999999987653
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.60 E-value=4e-14 Score=122.45 Aligned_cols=224 Identities=16% Similarity=0.184 Sum_probs=144.3
Q ss_pred ecCCceEEEEEe--CCCCeEEEecCCcEEEEEeccCc--------eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEE
Q 019384 58 MHGGPVLDCCFH--DDSSGFSASADHTVRRLVFSHGK--------EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKC 126 (342)
Q Consensus 58 ~h~~~V~~~~~~--~~~~~~s~s~D~~i~~w~~~~~~--------~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~i 126 (342)
+|.++|..+.|. .|..+++||.|.+|.+|.+.... ...+.+|...|.-++|+|.. +.|+|++.|.+|++
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 799999999997 45566799999999999986543 23578999999999999965 67899999999999
Q ss_pred EcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEE
Q 019384 127 WDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYA 204 (342)
Q Consensus 127 Wd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 204 (342)
|++.++.. ... ..|+..+.++++ +|..+++.+.|+.||+||.+++...... ..+.......+.|..++..+-
T Consensus 159 Wnv~tgea--li~---l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 159 WNVGTGEA--LIT---LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EeccCCce--eee---cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceee
Confidence 99986543 111 225555666555 6779999999999999999987554333 222233344555677777443
Q ss_pred EEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE-EEecCCCeEEEEeCCCcee-eecc
Q 019384 205 LSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF-ATGGCDGFVNVWDGNNKKR-LYQY 281 (342)
Q Consensus 205 ~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l-~sgs~Dg~I~iWd~~~~~~-~~~~ 281 (342)
+|- .-....+-+||...-.... ..+..+. +. .|.-=-|.||..++ ++|--|+.||.|.+.+... +..+
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~----~~~elDt-Sn----Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPI----ALQELDT-SN----GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred eccccccccceeccCcccccCcc----eeEEecc-CC----ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 332 2223344568864322221 1111110 11 12222467887765 5677899999999876432 2222
Q ss_pred CCC--CcceEEEEECCC
Q 019384 282 SKY--PTSIAALSFSRD 296 (342)
Q Consensus 282 ~~~--~~~V~~v~~spd 296 (342)
..+ ..+=..+.|-|.
T Consensus 304 n~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 304 NTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cccccCCcccccccccc
Confidence 221 223355566554
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.60 E-value=5.2e-12 Score=114.12 Aligned_cols=245 Identities=13% Similarity=0.085 Sum_probs=148.4
Q ss_pred CCCeEEEEEcCCCCeEEEEe-CCCcEEEEECCC-cee--eeeeecCCceEEEEEeCCCCe-EEEe-cCCcEEEEEeccCc
Q 019384 19 SDGISNLRFSNHSDHLLVSS-WDKSVRLYDASA-NVL--RGEFMHGGPVLDCCFHDDSSG-FSAS-ADHTVRRLVFSHGK 92 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s-~Dgti~vwd~~~-~~~--~~~~~h~~~V~~~~~~~~~~~-~s~s-~D~~i~~w~~~~~~ 92 (342)
......++|+|++++|+.++ .++.|.+|++.. +++ .......+....+.|+++++. ++++ .++.+.+|+++...
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 45678899999999987664 589999999863 433 222233445678889877765 4554 47889999986432
Q ss_pred -e-ee--cccCCcceeEEEEeCCCCEEE-EeeCCCcEEEEcCCCCCCcc---eeeeee-cCCCCcEEEEeccCCeEEEEE
Q 019384 93 -E-DI--LGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKCWDPRGASGQE---RTLVGT-YPQPERVYSLSLVGNRLVVAT 163 (342)
Q Consensus 93 -~-~~--~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~~~~~~---~~~~~~-~~~~~~v~~~s~~~~~~~~~s 163 (342)
. .. ...+.....+++++|++++++ +...++.|.+||+++..... ...... ......-..++.+++.++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe
Confidence 1 11 112334467788999998875 55667999999987521110 000110 111122345667777777766
Q ss_pred c-CCeEEEEeCCCC--CCc-ccccc---cc--cceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeE
Q 019384 164 A-GRHVNVYDLRNM--SQP-EQRRE---SS--LKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCH 233 (342)
Q Consensus 164 ~-d~~v~iwd~~~~--~~~-~~~~~---~~--~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h 233 (342)
. +++|.+||+... ... .+... .. .......+.++|+++.++++.. ++. |.+|++..... ...+..+
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~--I~v~~i~~~~~--~~~~~~~ 269 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL--ISVFSVSEDGS--VLSFEGH 269 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe--EEEEEEeCCCC--eEEEeEE
Confidence 5 789999999732 110 11000 00 0011234778999998888753 444 45577643221 1223333
Q ss_pred EecCCCCceeeeeeEEEEcCCCCeEEEecC-CCeEEEEeCC
Q 019384 234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGC-DGFVNVWDGN 273 (342)
Q Consensus 234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-Dg~I~iWd~~ 273 (342)
.... .....++++|+|++|+++.. +++|.+|+++
T Consensus 270 ~~~~------~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 270 QPTE------TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred Eecc------ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 3221 12457899999999887664 8999999874
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=8.8e-14 Score=118.33 Aligned_cols=180 Identities=14% Similarity=0.223 Sum_probs=118.8
Q ss_pred CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCccc-ccccccce
Q 019384 113 GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQ-RRESSLKY 189 (342)
Q Consensus 113 ~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~-~~~~~~~~ 189 (342)
..+|++-..|+|++||..++... ..+..++.....+.|.- .++.+.+|+.||+||+||+|......+ ......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l--~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL--EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh--heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 46888888999999998764321 11222222222233333 567899999999999999998643222 22222223
Q ss_pred eeEEEEEeeCCceEEEEcc--CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCe
Q 019384 190 QTRCVRCYPNGTGYALSSV--EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGF 266 (342)
Q Consensus 190 ~~~~v~~~~~~~~~~~~s~--~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~ 266 (342)
...|+.....++.++++.. .....+.+||.+..++...-....|.. -|++++|||.. ++|+|||.||.
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D---------DVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND---------DVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC---------cceeEEecCCCCCeEEeecccce
Confidence 4456655556667777753 344567899998776643333445544 49999999975 58999999999
Q ss_pred EEEEeCCCce---eeeccCCCCcceEEEEECCCC--CEEEEE
Q 019384 267 VNVWDGNNKK---RLYQYSKYPTSIAALSFSRDG--RLLAVA 303 (342)
Q Consensus 267 I~iWd~~~~~---~~~~~~~~~~~V~~v~~spdg--~~las~ 303 (342)
|.|+|++... .+.....|.+.|.++.|..++ ++....
T Consensus 190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT 231 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT 231 (376)
T ss_pred EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE
Confidence 9999987421 233444677889999999998 544433
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=8.9e-13 Score=107.51 Aligned_cols=257 Identities=11% Similarity=0.080 Sum_probs=163.6
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEECCC---------c--eeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEec
Q 019384 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA---------N--VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFS 89 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~---------~--~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~ 89 (342)
.|.+-+++|-+++|+.|..+|+|-+..++. + ....+.+|.++|+.+.|. +..+++|+ ||.|+-|.+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeecc-CceEEEeeeh
Confidence 466778999999999999999999999853 1 145567899999999998 44555555 5999999875
Q ss_pred cCce---------eecccCC-----cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-
Q 019384 90 HGKE---------DILGKHD-----APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL- 154 (342)
Q Consensus 90 ~~~~---------~~~~~h~-----~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~- 154 (342)
...+ .....|. ..|+++-..|..+.++.++.|+.|.-||++++.. ...+. .|+..+-++..
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i--~r~~r--GHtDYvH~vv~R 165 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI--QREYR--GHTDYVHSVVGR 165 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE--EEEEc--CCcceeeeeeec
Confidence 4332 1112233 4588898898877788888999999999987543 12222 23444444433
Q ss_pred c-CCeEEEEEcCCeEEEEeCCCCCCccccc--------ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc
Q 019384 155 V-GNRLVVATAGRHVNVYDLRNMSQPEQRR--------ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA 225 (342)
Q Consensus 155 ~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~ 225 (342)
+ ...+++++.||++|+||.++.+...... .++....+-+++... ..+++| .+-. +.+|.++.....
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCG-gGp~--lslwhLrsse~t 240 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCG-GGPK--LSLWHLRSSEST 240 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEec-CCCc--eeEEeccCCCce
Confidence 2 3479999999999999999875421110 011111233443332 234433 3333 456998876666
Q ss_pred ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEE
Q 019384 226 KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVA 303 (342)
Q Consensus 226 ~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~ 303 (342)
..+.+++|.+ -|.|- ...++++++.+-|.-|... +..-...+.....+++..++...--+++.
T Consensus 241 ~vfpipa~v~------------~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ 303 (325)
T KOG0649|consen 241 CVFPIPARVH------------LVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISI 303 (325)
T ss_pred EEEeccccee------------Eeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEe
Confidence 6676666543 45563 4568888888889999765 33333333333345666665554434333
No 192
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.57 E-value=2.9e-13 Score=114.46 Aligned_cols=232 Identities=19% Similarity=0.274 Sum_probs=158.6
Q ss_pred CCCeEEEEEc-------CCCCeEEEEeCCCcEEEEECCCceeeeee---ecCCce---EEEEEeCCCCeEEEecCCcEEE
Q 019384 19 SDGISNLRFS-------NHSDHLLVSSWDKSVRLYDASANVLRGEF---MHGGPV---LDCCFHDDSSGFSASADHTVRR 85 (342)
Q Consensus 19 ~~~V~~l~fs-------~~~~~l~s~s~Dgti~vwd~~~~~~~~~~---~h~~~V---~~~~~~~~~~~~s~s~D~~i~~ 85 (342)
..-|+.-+|- |+..++|+.+.|.-|.+||.-+++++..+ .|.+.+ .+++|++|+..+.|+....|++
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirv 183 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRV 183 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEE
Confidence 4667777776 67789999999999999999998877653 576665 4799999999999999999999
Q ss_pred EEecc-Cc-eee--cc-----cCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc
Q 019384 86 LVFSH-GK-EDI--LG-----KHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV 155 (342)
Q Consensus 86 w~~~~-~~-~~~--~~-----~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~ 155 (342)
+++.. ++ ... .. +..+.|.|++|+|.. +.++.|+.-.++-|+.-.... ....+..+....+-..+..+
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--PLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC--ceeeecccCCCeeeEEeccC
Confidence 99843 33 111 11 235678899999965 478889988877666432221 12334444444555566778
Q ss_pred CCeEEEEEc-CCeEEEEeCCCCCCcccccccccc--eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384 156 GNRLVVATA-GRHVNVYDLRNMSQPEQRRESSLK--YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC 232 (342)
Q Consensus 156 ~~~~~~~s~-d~~v~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~ 232 (342)
++.+.+++. |..|..||+|....+.-...-+.. .+-..+...|+++.+++|+.+|.|++ ||+..-.. ....+..
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~v--wdlk~~gn-~~sv~~~ 338 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRV--WDLKDLGN-EVSVTGN 338 (406)
T ss_pred cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEE--EecCCCCC-ccccccc
Confidence 888887754 457999999987655433322222 11123445688999999999998765 99854211 1111222
Q ss_pred EEecCCCCceeeeeeEEEEcCCCCeEEEecCC
Q 019384 233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD 264 (342)
Q Consensus 233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D 264 (342)
|.. .++.|+++|-=.++|+++-.
T Consensus 339 ~sd---------~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 339 YSD---------TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccc---------cccceecCcccceeeeccCc
Confidence 222 48899999997788888743
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.55 E-value=8.9e-13 Score=110.06 Aligned_cols=234 Identities=17% Similarity=0.135 Sum_probs=152.3
Q ss_pred CCCCCeEEEEEcCCC-----CeEEEEeCCCcEEEEECCC--ceeee--------eeecCCceEEEEEe--CCCCeEEEec
Q 019384 17 PPSDGISNLRFSNHS-----DHLLVSSWDKSVRLYDASA--NVLRG--------EFMHGGPVLDCCFH--DDSSGFSASA 79 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~-----~~l~s~s~Dgti~vwd~~~--~~~~~--------~~~h~~~V~~~~~~--~~~~~~s~s~ 79 (342)
.|.=.++.+-|.|+. ++|||+ +.-+|||.+.. ..... ...+..++++..|. +...+.+.|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 456678899999986 345554 34699999863 22111 12356788888886 3445568899
Q ss_pred CCcEEEEEeccCc----eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC-CCcEEEEe
Q 019384 80 DHTVRRLVFSHGK----EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ-PERVYSLS 153 (342)
Q Consensus 80 D~~i~~w~~~~~~----~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~-~~~v~~~s 153 (342)
|-+-.+||++++. ..-+..|.+.|..++|..++ +.|+|++.||.+|++|+|... ..+++..... ......++
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--HSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--HSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--cceEEecCCCCCCcceeec
Confidence 9999999999873 23467899999999999865 578999999999999998532 2233322222 33456677
Q ss_pred cc---CCeEEEEEcC-CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh-cccc
Q 019384 154 LV---GNRLVVATAG-RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ-AKKY 228 (342)
Q Consensus 154 ~~---~~~~~~~s~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~-~~~~ 228 (342)
++ ++.+++...| ..|.+.|+|....+..+. ..+...++.++|.|.....++...|.... .+||+.+... ...-
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L-~~H~a~VNgIaWaPhS~~hictaGDD~qa-liWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL-RNHQASVNGIAWAPHSSSHICTAGDDCQA-LIWDLQQMPRENGED 327 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehh-hcCcccccceEecCCCCceeeecCCcceE-EEEecccccccCCCC
Confidence 75 4566665555 579999999876554433 23455688999999876554444443333 4799854322 1100
Q ss_pred eeeeEEecCCCCceeeeeeEEEEcCC-CCeEEEecC
Q 019384 229 AFKCHRKSEAGRDIVYPVNAIAFHPI-YGTFATGGC 263 (342)
Q Consensus 229 ~~~~h~~~~~~~~~~~~v~~v~~sp~-~~~l~sgs~ 263 (342)
.+.. ....+.|+.+.|+|. +.+++.+..
T Consensus 328 Pila-------y~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 328 PILA-------YTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred chhh-------hhccceeeeeeecccCCCEEEEEec
Confidence 0000 001235899999865 557777653
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.52 E-value=1.3e-12 Score=109.11 Aligned_cols=159 Identities=15% Similarity=0.191 Sum_probs=118.7
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eee------eecCCceEEEEEeC--CCCeEEEecCCcEE
Q 019384 14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGE------FMHGGPVLDCCFHD--DSSGFSASADHTVR 84 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~------~~h~~~V~~~~~~~--~~~~~s~s~D~~i~ 84 (342)
|-+++-..|.+|-|-|++..||+-. |..|.+|++..+.. ... ..|....++..|+| ++..+.+..|++++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~ 196 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQ 196 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEE
Confidence 3345566899999999999998765 99999999976532 222 23566778888974 67778888999999
Q ss_pred EEEeccCcee--ecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---Ce
Q 019384 85 RLVFSHGKED--ILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---NR 158 (342)
Q Consensus 85 ~w~~~~~~~~--~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---~~ 158 (342)
.||+++.... .-..|...|+.++|+|+-+ .|+||+.|+.||+||+|+.+... .....+..-+.++-+++ ..
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv---~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV---QELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc---cccCCCceEEEEEEecCccceE
Confidence 9999976642 3467999999999999764 57899999999999998643221 12223444455555543 36
Q ss_pred EEEEEcCCeEEEEeCCCC
Q 019384 159 LVVATAGRHVNVYDLRNM 176 (342)
Q Consensus 159 ~~~~s~d~~v~iwd~~~~ 176 (342)
+++++.|..|.+|.+...
T Consensus 274 iLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSV 291 (370)
T ss_pred EEecCCCceeEEEecccc
Confidence 889999999999987654
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=1.3e-12 Score=113.55 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=97.2
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECC--------C------ce---eeeeeecCCceEEEEEeCCCCe-EEE
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDAS--------A------NV---LRGEFMHGGPVLDCCFHDDSSG-FSA 77 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~--------~------~~---~~~~~~h~~~V~~~~~~~~~~~-~s~ 77 (342)
..|..+|+.++|+|+|++||||+.+|.|.+|... + .. .+...+|...|+.++|++++.. +++
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence 5788999999999999999999999999999875 2 11 2234469999999999977665 699
Q ss_pred ecCCcEEEEEeccCcee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384 78 SADHTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 78 s~D~~i~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~ 130 (342)
+.|.++++||+..+... .+.+|...|..++|.|-++++++-|.|...+.+.+.
T Consensus 142 s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 142 SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 99999999999998854 567899999999999999999999999866666543
No 196
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=9.1e-12 Score=117.81 Aligned_cols=267 Identities=16% Similarity=0.192 Sum_probs=161.6
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCC----CeEEEecCCcEEEEEeccCcee-ecc
Q 019384 24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDS----SGFSASADHTVRRLVFSHGKED-ILG 97 (342)
Q Consensus 24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~----~~~s~s~D~~i~~w~~~~~~~~-~~~ 97 (342)
.-.||+|++.++. ..+..|+||-..++.+.. .-.|..++..+.+.+.. .+++++.||+|++|++..+... ++.
T Consensus 21 ~avfSnD~k~l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 21 PAVFSNDAKFLFL-CTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred ccccccCCcEEEE-eeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 3578999988874 456689999998886554 44789999999986433 3469999999999999887743 222
Q ss_pred cCCcceeEEEEeC---CCCEEE-EeeCC------------CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEE
Q 019384 98 KHDAPVRCIEYSY---AAGQVI-TGSWD------------KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVV 161 (342)
Q Consensus 98 ~h~~~V~~~~~~~---~~~~l~-sgs~D------------~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~ 161 (342)
.+ -.+..+.+.| +...++ -+..| +.++-+.+.+.............. ..++..+..++....
T Consensus 100 ~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 100 NN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGI 177 (792)
T ss_pred cC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEE
Confidence 21 1222222211 001111 12222 222222221110000000001101 123334444444444
Q ss_pred EEcCCeEEEEeCCCCCC--cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechh--hhhcccceeeeEEecC
Q 019384 162 ATAGRHVNVYDLRNMSQ--PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSE--ASQAKKYAFKCHRKSE 237 (342)
Q Consensus 162 ~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~--~~~~~~~~~~~h~~~~ 237 (342)
+. ...+.+|+...... ........+...++|++++|++..++++..+|++.+ |..-. ........+.-|..
T Consensus 178 ~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v--w~d~~~~~~~~t~t~lHWH~~-- 252 (792)
T KOG1963|consen 178 VH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV--WRDFGSSDDSETCTLLHWHHD-- 252 (792)
T ss_pred EE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEE--EeccccccccccceEEEeccc--
Confidence 44 34577887765321 111111223344789999999999999999998765 54322 11111122222322
Q ss_pred CCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 238 AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 238 ~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
+|++++|+++|.+|.||+..|-+-+|..++++ -+-++.-.++|..+.+|||+.+.+....+
T Consensus 253 -------~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 253 -------EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred -------ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 59999999999999999999999999999877 44456777899999999999988887764
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=2.1e-12 Score=109.15 Aligned_cols=244 Identities=14% Similarity=0.128 Sum_probs=165.8
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce----eeeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccC-c
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV----LRGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHG-K 92 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~----~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~-~ 92 (342)
.+.|++.+|++|+..+|.+.....|-||...+.. ...+..|.+.|++++|.+.. ++++|+.|..-.+|....+ .
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4679999999999999999999999999976543 33445799999999998654 7899999999999987333 3
Q ss_pred ---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee--cCCCCcEEEEeccCC--eEEEEEcC
Q 019384 93 ---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT--YPQPERVYSLSLVGN--RLVVATAG 165 (342)
Q Consensus 93 ---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~v~~~s~~~~--~~~~~s~d 165 (342)
...+..|..+.+++.|+|..++|+.||.-+.|.+|=.+.... -..... .....+|.++++.++ .+++++.|
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eehhhhhCCccccceeeeeccCCcceecccccC
Confidence 235667899999999999999999999999999987653221 000111 122345778888766 56778888
Q ss_pred CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384 166 RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP 245 (342)
Q Consensus 166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~ 245 (342)
+..|+|..--... .++.. + .| |+.+........... ...+-
T Consensus 168 ~k~rVfSayIK~V-dekpa-p----------~p------------------Wgsk~PFG~lm~E~~---------~~ggw 208 (361)
T KOG1523|consen 168 GKCRVFSAYIKGV-DEKPA-P----------TP------------------WGSKMPFGQLMSEAS---------SSGGW 208 (361)
T ss_pred cceeEEEEeeecc-ccCCC-C----------CC------------------CccCCcHHHHHHhhc---------cCCCc
Confidence 8888886421100 00000 0 01 111000000000000 11125
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeCCCce-eeeccCCCCcceEEEEECCCCCEEEEE
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSIAALSFSRDGRLLAVA 303 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~spdg~~las~ 303 (342)
|..+.|+|.|..|+=-+.|.++.+=|..... .+..+....-+..++.|-.+...+++|
T Consensus 209 vh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 209 VHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAG 267 (361)
T ss_pred eeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence 8889999999999999999999999987654 344443333567888887777766554
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3e-13 Score=118.07 Aligned_cols=189 Identities=17% Similarity=0.160 Sum_probs=129.9
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEECC-CceeeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCceee--c-c
Q 019384 23 SNLRFSNHSDHLLVSSWDKSVRLYDAS-ANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDI--L-G 97 (342)
Q Consensus 23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~-~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~~--~-~ 97 (342)
-.++|+.+|..|++++.||++|||+.. ...+..+..|.+.|.++.|++|+++ ++.+.| ..++|+..++.... - .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 579999999999999999999999954 4455667789999999999988865 577888 89999998874211 1 1
Q ss_pred cCCcceeEEEEeCCC---C-EEEE-eeCCCcEEEEcCCCCCC----cceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384 98 KHDAPVRCIEYSYAA---G-QVIT-GSWDKSLKCWDPRGASG----QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV 168 (342)
Q Consensus 98 ~h~~~V~~~~~~~~~---~-~l~s-gs~D~~I~iWd~~~~~~----~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v 168 (342)
.-......|.|+.|+ . ++++ -..-+.|+.||+..-.+ ..++.+..+ .....+.++.+++.++.++.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEcCCCcEEEEeccCCcE
Confidence 222345677887765 2 2333 23334667666532111 111111111 133455677788999999999999
Q ss_pred EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384 169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM 214 (342)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i 214 (342)
-+++..+.+...... ..+...++.+.|+|+.+..+..+.+....+
T Consensus 306 ai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 999998765433322 234457899999999998888777766554
No 199
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=1.2e-11 Score=111.22 Aligned_cols=191 Identities=15% Similarity=0.187 Sum_probs=120.1
Q ss_pred eEEEecCCcEEEEEeccCceee-cc----cCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC
Q 019384 74 GFSASADHTVRRLVFSHGKEDI-LG----KHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE 147 (342)
Q Consensus 74 ~~s~s~D~~i~~w~~~~~~~~~-~~----~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~ 147 (342)
++.+-.-|.+++.|....+... +. --+..|+|+.|-|.+ .+|+.+-.+|.+.++|.+..... +.
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~----------t~ 257 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA----------TA 257 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC----------CC
Confidence 4566666677766655433211 11 123679999999854 56788889999999986421110 00
Q ss_pred cEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc
Q 019384 148 RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK 227 (342)
Q Consensus 148 ~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~ 227 (342)
.....-..++.+.... |--...+.+..+... -...++.++|+|||+.+++.+.|+..+| ||.........
T Consensus 258 p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRv--F~fdt~eLlg~ 327 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILT-------SKSKKTRNPVARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRI--FDFDTQELLGV 327 (636)
T ss_pred CcccccCCCCeeEEee-------eeccccCCccceeEe-ccccccceeEcCCCceEEEEecCceEEE--eeccHHHHHHH
Confidence 0111111233332211 111111111111110 1124667889999999999999998766 55532211110
Q ss_pred ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384 228 YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp 295 (342)
. ....+...||+|||||++|++|++|--|.||.....+.++.-++|+++|..|+|.|
T Consensus 328 m-----------kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 M-----------KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred H-----------HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 0 01123588999999999999999999999999999999999999999999999997
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.4e-12 Score=121.77 Aligned_cols=188 Identities=19% Similarity=0.136 Sum_probs=124.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEE-ecCCcEEEE--Eec
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWD---KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSA-SADHTVRRL--VFS 89 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~D---gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~-s~D~~i~~w--~~~ 89 (342)
.+...|.+.+|||||++|+.++.+ ..|++||+.++.........+......|+|++.. +.+ +.++.+.+| ++.
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 456679999999999999988765 3699999987653332223344557899988764 443 467776666 445
Q ss_pred cCceeecccCCcceeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384 90 HGKEDILGKHDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV 168 (342)
Q Consensus 90 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v 168 (342)
++....+..+...+.+.+|+||++.|+.++ .++..+||+++...... ..+. ... ....++++++.+++++.++ +
T Consensus 281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~-~~~--~~~~~SpDG~~ia~~~~~~-i 355 (429)
T PRK01742 281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVG-GRG--YSAQISADGKTLVMINGDN-V 355 (429)
T ss_pred CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEec-CCC--CCccCCCCCCEEEEEcCCC-E
Confidence 555556666777788999999999776544 57888999865432221 1221 111 2235677788888777654 6
Q ss_pred EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384 169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA 213 (342)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~ 213 (342)
.+||+.++...... .. .....+.|+|+++.++.++.++...
T Consensus 356 ~~~Dl~~g~~~~lt--~~--~~~~~~~~sPdG~~i~~~s~~g~~~ 396 (429)
T PRK01742 356 VKQDLTSGSTEVLS--ST--FLDESPSISPNGIMIIYSSTQGLGK 396 (429)
T ss_pred EEEECCCCCeEEec--CC--CCCCCceECCCCCEEEEEEcCCCce
Confidence 66999876432111 11 1224567999999999888776654
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.50 E-value=6.2e-12 Score=122.61 Aligned_cols=257 Identities=16% Similarity=0.155 Sum_probs=154.0
Q ss_pred CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCC-----ce--eeeeee-cCCceEEEEEeC-CCCeEEEecCCcEEE
Q 019384 16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASA-----NV--LRGEFM-HGGPVLDCCFHD-DSSGFSASADHTVRR 85 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~-----~~--~~~~~~-h~~~V~~~~~~~-~~~~~s~s~D~~i~~ 85 (342)
.+|+..|..++-+++ +.+++|||.|||||+||... +. ...++. ....+.++.+.+ +.+++.++.||.|++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 477888888888875 59999999999999999853 11 222233 466788888764 445667899999999
Q ss_pred EEeccCcee--------ec--ccCCcceeEEEEeCCC-C-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe
Q 019384 86 LVFSHGKED--------IL--GKHDAPVRCIEYSYAA-G-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS 153 (342)
Q Consensus 86 w~~~~~~~~--------~~--~~h~~~V~~~~~~~~~-~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s 153 (342)
..++..+.. .. .+....|.+-+|.... . .|+-+..-+.|-.||+++.... ..+.....++.+.+++
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~--w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA--WRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--HhhhcCccccceeEEE
Confidence 998773211 11 1222345555665433 3 5666777789999999864321 1122222234455554
Q ss_pred c--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCC---ceEEEEccCCeEEEEEeechhhhhcccc
Q 019384 154 L--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG---TGYALSSVEGRVAMEFFDLSEASQAKKY 228 (342)
Q Consensus 154 ~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~s~~~~~~i~~~d~~~~~~~~~~ 228 (342)
. .++.+++|+..|.+-+||+|=. .+...-..+....++.+..+|-- ...++++..+...+..|+...+. +.+
T Consensus 1203 idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~--~~~ 1279 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL--RQT 1279 (1431)
T ss_pred ecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc--ceE
Confidence 4 4568999999999999999853 33333333333445555555432 33444444345566778875442 222
Q ss_pred eeeeEEe---cCCC-------CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee
Q 019384 229 AFKCHRK---SEAG-------RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR 277 (342)
Q Consensus 229 ~~~~h~~---~~~~-------~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~ 277 (342)
.+-...+ .+.. ....-+...+++.-.+.++.+|+.|..||.||......
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 2221100 0000 01111223345555577899999999999999876543
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=3.2e-11 Score=103.97 Aligned_cols=239 Identities=17% Similarity=0.195 Sum_probs=153.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEeCCCCeEEEecCCc--EEEEEeccCce
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFHDDSSGFSASADHT--VRRLVFSHGKE 93 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~--i~~w~~~~~~~ 93 (342)
.....+....|+.+...|..|+.|| -++|..... +.......+-.|.-..|+.. .++..+.+.. +++.++..+..
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCce
Confidence 3455778888999999999999998 488887543 22221112223445556433 3334444443 66666655443
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC--eEEE--EEcCCeEE
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLVV--ATAGRHVN 169 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--~~~~--~s~d~~v~ 169 (342)
..-.-....|.++.++. ++|+.+=.+. |.|+|++.= +..........++..+.+++++.. +++. ....|.|.
T Consensus 81 ICe~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEecCCceEEEEEcc--ceEEEEEccc-EEEEecccc-eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 22122235788999875 5666665544 999998741 111111111134455777887654 4442 23347899
Q ss_pred EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384 170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249 (342)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 249 (342)
+||+.+.+.. ... ..++..+.|++++++|..++++|..|++ |++|.+.+.+. .+.++--.. .-.|.++
T Consensus 157 l~d~~nl~~v-~~I-~aH~~~lAalafs~~G~llATASeKGTV-IRVf~v~~G~k--l~eFRRG~~-------~~~IySL 224 (391)
T KOG2110|consen 157 LFDTINLQPV-NTI-NAHKGPLAALAFSPDGTLLATASEKGTV-IRVFSVPEGQK--LYEFRRGTY-------PVSIYSL 224 (391)
T ss_pred EEEcccceee-eEE-EecCCceeEEEECCCCCEEEEeccCceE-EEEEEcCCccE--eeeeeCCce-------eeEEEEE
Confidence 9999876332 222 2566778999999999999999999996 68899865543 333332111 1258899
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCC
Q 019384 250 AFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 250 ~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
+|+|++++|++.|.-++|+|+.++
T Consensus 225 ~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 225 SFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EECCCCCeEEEecCCCeEEEEEec
Confidence 999999999999999999999865
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=8.7e-12 Score=116.37 Aligned_cols=235 Identities=11% Similarity=0.056 Sum_probs=146.4
Q ss_pred CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEe---cCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE
Q 019384 41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SAS---ADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI 116 (342)
Q Consensus 41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s---~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 116 (342)
..|.+||..+...+....+...+.+..|+|+++.+ ..+ .+..+.+|++.+++...+......+...+|+|||+.|+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 47889998776555544567789999999888754 333 23468888888776554443444456789999999886
Q ss_pred Ee-eCCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-CeEEEE--eCCCCCCccccccccccee
Q 019384 117 TG-SWDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-RHVNVY--DLRNMSQPEQRRESSLKYQ 190 (342)
Q Consensus 117 sg-s~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-~~v~iw--d~~~~~~~~~~~~~~~~~~ 190 (342)
.. +.++ .|.+||++++.. . .+...........++++++.++..+.. +...+| |+.++.. ..... ....
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~--~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~lt~-~~~~ 332 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQI--R-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRITW-EGSQ 332 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCE--E-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEeec-CCCC
Confidence 43 4454 588899875432 1 121111222334577777888777654 344444 6655422 11111 1112
Q ss_pred eEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe---
Q 019384 191 TRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF--- 266 (342)
Q Consensus 191 ~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~--- 266 (342)
.....++|+|+.++..+ .++...+++||...... . .+.. . .......|+|||++|+.++.|+.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~--~Lt~------~----~~~~~p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q--VLTD------T----FLDETPSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E--EeCC------C----CCCCCceECCCCCEEEEEEcCCCceE
Confidence 34567899999887654 34445677788754321 1 1110 0 01234679999999988887764
Q ss_pred EEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384 267 VNVWDGNNKKRLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 267 I~iWd~~~~~~~~~~~~~~~~V~~v~~sp 295 (342)
++++++. ++..+.+.+|.+.+...+|||
T Consensus 400 l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 400 LNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 6777774 555666777888899999998
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.49 E-value=7.2e-13 Score=118.89 Aligned_cols=179 Identities=15% Similarity=0.165 Sum_probs=122.5
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEec-cCcee
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFS-HGKED 94 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~-~~~~~ 94 (342)
..|.+.|.+-+|+|||.-|+|++.||.|++|.-++-..........+|.|++|.|+..-+.-+..+.+.+=.+. +.+..
T Consensus 101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i 180 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII 180 (737)
T ss_pred hhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee
Confidence 36778999999999999999999999999998654322223346678999999866543322223333222222 22244
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE-EEEEcCCeEEEEeC
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL-VVATAGRHVNVYDL 173 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~-~~~s~d~~v~iwd~ 173 (342)
....|.+-|.|++|++..+.|+||+.|-..|+||-... ..+.+..+.-.+.+++++++.+ +.++. .+.|+=.
T Consensus 181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R~~~- 253 (737)
T KOG1524|consen 181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPEKDYLLWSY-NTARFSS- 253 (737)
T ss_pred EEeccCcEEEEeecCccccceeecCCceeEEeecccCc-----ccccCChhccceeeeeeccccceeeeee-eeeeecC-
Confidence 56789999999999999999999999999999996421 1222323344566777776643 33333 3444111
Q ss_pred CCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384 174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA 213 (342)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~ 213 (342)
+-.+.+..++|++||..++++...|.+.
T Consensus 254 ------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 254 ------------PRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred ------------CCccceEEEEEcCCCceeeccccCceEE
Confidence 1123567789999999999998888754
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=3.2e-11 Score=102.05 Aligned_cols=229 Identities=17% Similarity=0.247 Sum_probs=133.4
Q ss_pred ceEEEEEeCCCCeEEEecCCcEEEEEeccCceeeccc-CCcceeEEEEeCCCCEE-EEeeCC------CcEEEEcCCCCC
Q 019384 62 PVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGK-HDAPVRCIEYSYAAGQV-ITGSWD------KSLKCWDPRGAS 133 (342)
Q Consensus 62 ~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l-~sgs~D------~~I~iWd~~~~~ 133 (342)
....++|..|..-++++.|.-.+++..+--++..-.. +...+.-+..--..++| +.|+.. ..+.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k-- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK-- 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc--
Confidence 3456899888888888888888999875432211110 11111101111112333 334443 4899999321
Q ss_pred CcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384 134 GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA 213 (342)
Q Consensus 134 ~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~ 213 (342)
. + .+....-...|.++.+.++.|+++.. +.|.+|...+.-......+...+-.-.|....-.+..++..-.-....
T Consensus 85 ~--~-~i~el~f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 E--R-CIIELSFNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred C--c-EEEEEEeccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 1 1 12222233456677778888887665 579999876432111111100000012222222222222222222233
Q ss_pred EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe-EEEEeCCCceeeeccCC--CCcceEE
Q 019384 214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF-VNVWDGNNKKRLYQYSK--YPTSIAA 290 (342)
Q Consensus 214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~-I~iWd~~~~~~~~~~~~--~~~~V~~ 290 (342)
+.+.|+..........+.+|.. .|.|++.+-+|.+|||+|..|| |||||.++++.++++.. -...|++
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s---------~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDS---------DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccC---------ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 4567775432212245667765 5999999999999999999997 89999999999988763 2458999
Q ss_pred EEECCCCCEEEEEEe
Q 019384 291 LSFSRDGRLLAVASS 305 (342)
Q Consensus 291 v~~spdg~~las~s~ 305 (342)
|+||||+.+||++|.
T Consensus 232 iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSD 246 (346)
T ss_pred EEeCCCccEEEEEcC
Confidence 999999999998885
No 206
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.1e-11 Score=101.24 Aligned_cols=165 Identities=20% Similarity=0.311 Sum_probs=115.4
Q ss_pred CCCCCccCC-CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-------ee--eeeecCC-----ceEEEEEe-C
Q 019384 7 PPTSGRELG-NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-------LR--GEFMHGG-----PVLDCCFH-D 70 (342)
Q Consensus 7 ~~~~~~~~~-~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-------~~--~~~~h~~-----~V~~~~~~-~ 70 (342)
||-+.+-+. ..|...|+.++|. .++|++| .||.|+=|...... +. ....|.+ .|+++... .
T Consensus 49 ~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~ 125 (325)
T KOG0649|consen 49 PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS 125 (325)
T ss_pred CCCCcceeeccccCCCeeeeeee--hhheeec-cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence 344444444 5788999999998 3456655 56999999875321 10 0112332 36676665 4
Q ss_pred CCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC--
Q 019384 71 DSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE-- 147 (342)
Q Consensus 71 ~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~-- 147 (342)
.+.++.|+.|+-+.-||+++++ .+.+++|++.|.++.--.....++||+.||++|+||++++.. ..++..+.++.
T Consensus 126 enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~--v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 126 ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH--VSMIEPYKNPNLL 203 (325)
T ss_pred CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce--eEEeccccChhhc
Confidence 6678899999999999999998 467899999999998755567899999999999999986432 23343333221
Q ss_pred ------cEEEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384 148 ------RVYSLSLVGNRLVVATAGRHVNVYDLRNMS 177 (342)
Q Consensus 148 ------~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~ 177 (342)
-+.+++.+.+.++ |+.+..+.+|.++...
T Consensus 204 Rp~~g~wigala~~edWlv-CGgGp~lslwhLrsse 238 (325)
T KOG0649|consen 204 RPDWGKWIGALAVNEDWLV-CGGGPKLSLWHLRSSE 238 (325)
T ss_pred CcccCceeEEEeccCceEE-ecCCCceeEEeccCCC
Confidence 2455666666655 6667789999999764
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.47 E-value=2.1e-12 Score=109.24 Aligned_cols=196 Identities=16% Similarity=0.239 Sum_probs=135.6
Q ss_pred cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCC-
Q 019384 101 APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ- 178 (342)
Q Consensus 101 ~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~- 178 (342)
.+|+|-+|++|.+.++.+-....|-|+....... +....+..+......+++++..+.|++++.|+.-.+|....+..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 6799999999999999999999999998664331 11122222222333344445567899999999999998854321
Q ss_pred cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE
Q 019384 179 PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF 258 (342)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l 258 (342)
........++...+||.|+|..+.|++++....+.+.+|..+.+--..+ |. ++.+...|.++.|||++-.|
T Consensus 91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK-----hi----kkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK-----HI----KKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh-----hh----CCccccceeeeeccCCccee
Confidence 0111112344567899999999999999999888887776543321111 11 11222368999999999999
Q ss_pred EEecCCCeEEEEeC-----CC-------------ceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 259 ATGGCDGFVNVWDG-----NN-------------KKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 259 ~sgs~Dg~I~iWd~-----~~-------------~~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
+.||.|+.+||++. +. +..+.++....+.|..+.|||+|..||-.+-
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC
Confidence 99999999999973 11 1223344455679999999999999987764
No 208
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=4.1e-12 Score=105.30 Aligned_cols=139 Identities=21% Similarity=0.344 Sum_probs=90.8
Q ss_pred eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384 167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV 246 (342)
Q Consensus 167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v 246 (342)
...+|.++....+...........+..++|+|++..+++........+.+||... .....+. . .++
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~~~--~---------~~~ 103 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFSFG--T---------QPR 103 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEeec--C---------CCc
Confidence 3455555433333322222223358899999999998766433223567799841 1111111 1 157
Q ss_pred eEEEEcCCCCeEEEecC---CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEE
Q 019384 247 NAIAFHPIYGTFATGGC---DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVR 323 (342)
Q Consensus 247 ~~v~~sp~~~~l~sgs~---Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~ 323 (342)
++|.|+|+|++|++|+. .|.|.+||.++.+.+.+.. |. .+..++|||||++|+++...- +...-+++.+|
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~-----r~~~dng~~Iw 176 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSP-----RLRVDNGFKIW 176 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEecc-----ceeccccEEEE
Confidence 88999999999998864 4679999999888887764 33 478999999999999987641 12233477777
Q ss_pred Ecc
Q 019384 324 SVN 326 (342)
Q Consensus 324 ~~~ 326 (342)
...
T Consensus 177 ~~~ 179 (194)
T PF08662_consen 177 SFQ 179 (194)
T ss_pred Eec
Confidence 664
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1e-11 Score=107.63 Aligned_cols=258 Identities=18% Similarity=0.205 Sum_probs=167.9
Q ss_pred CCCeEEEEEcCCCC--eEEEEeCCCcEEEEECCCceeeeee-------ecCCceEEEEEeCCCCeEEEecCCcEEEEEec
Q 019384 19 SDGISNLRFSNHSD--HLLVSSWDKSVRLYDASANVLRGEF-------MHGGPVLDCCFHDDSSGFSASADHTVRRLVFS 89 (342)
Q Consensus 19 ~~~V~~l~fs~~~~--~l~s~s~Dgti~vwd~~~~~~~~~~-------~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~ 89 (342)
...|.+++|--+++ .|...+.|-.+..+......+.... ...++|.++... ++.+++|-.+|.+++|...
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CCEEEEEecCCcEEEEecc
Confidence 45788888887653 4555557888888877665433321 234556555553 5678899999999999987
Q ss_pred cCc-----eeecccCCcceeEEEEeCCC-CEEEEeeCC--CcEEEEcCCCCCCcceeeeeecCCC-------Cc--EEEE
Q 019384 90 HGK-----EDILGKHDAPVRCIEYSYAA-GQVITGSWD--KSLKCWDPRGASGQERTLVGTYPQP-------ER--VYSL 152 (342)
Q Consensus 90 ~~~-----~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D--~~I~iWd~~~~~~~~~~~~~~~~~~-------~~--v~~~ 152 (342)
.+. ...+. ....+..+.-++.. ..+++|+.. ..+++||++...+ ++..-..+ .. +.++
T Consensus 134 ~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q----iw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 134 SGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ----IWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred CCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeeccccee----eeeccCCCCccccceeeeeeccc
Confidence 443 22222 22445555555544 356779999 8899999985421 22211111 11 1222
Q ss_pred ec--c--CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccc
Q 019384 153 SL--V--GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKY 228 (342)
Q Consensus 153 s~--~--~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~ 228 (342)
-| . ...|++++.-+.+|+||.+.++.|...... ....+.++...|+++.++++..-+.+. .||.+.......
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~--~FD~r~~kl~g~- 284 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLA--KFDLRGGKLLGC- 284 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhh--eecccCceeecc-
Confidence 22 2 347999999999999999987776544332 223467888899999999998777654 588864322111
Q ss_pred eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCC
Q 019384 229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296 (342)
Q Consensus 229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spd 296 (342)
-.+ +..+.|+++..||..++|++|+.|++|||+|+++.+++.... -...++++-+.++
T Consensus 285 ----~~k-----g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 285 ----GLK-----GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred ----ccC-----CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 011 233579999999999999999999999999999977665432 1244566666554
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=5.4e-11 Score=111.39 Aligned_cols=235 Identities=11% Similarity=0.086 Sum_probs=146.1
Q ss_pred CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecC---CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE
Q 019384 41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASAD---HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI 116 (342)
Q Consensus 41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D---~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 116 (342)
.+|.+||..+...+....+...+.+..|+|+++. +.++.+ ..+.+|++.++....+..+.....+.+|+||++.|+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 4799999877665555567778999999988764 445533 358889998877655555555556889999998774
Q ss_pred -EeeCCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc-CCe--EEEEeCCCCCCccccccccccee
Q 019384 117 -TGSWDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA-GRH--VNVYDLRNMSQPEQRRESSLKYQ 190 (342)
Q Consensus 117 -sgs~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~-d~~--v~iwd~~~~~~~~~~~~~~~~~~ 190 (342)
+.+.++ .|.+||+.++.. ..+...........++.+++.++..+. ++. |.++|+.+++... .... ...
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~---~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~--lt~~-g~~ 337 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQL---TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER--LTFQ-GNY 337 (433)
T ss_pred EEEeCCCCceEEEEECCCCCe---EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE--eecC-CCC
Confidence 555565 589999875432 122222112223467777777777664 333 6666765543211 1111 112
Q ss_pred eEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC---Ce
Q 019384 191 TRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD---GF 266 (342)
Q Consensus 191 ~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---g~ 266 (342)
....+++|+|+.++..+. ++...+++||..+.... . +. +.. ......|+|||++|+..+.+ +.
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~--Lt-~~~---------~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T--LT-PGS---------LDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-E--CC-CCC---------CCCCceECCCCCEEEEEEecCCceE
Confidence 235789999999877653 44556788987543211 1 11 100 12346899999988766553 35
Q ss_pred EEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384 267 VNVWDGNNKKRLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 267 I~iWd~~~~~~~~~~~~~~~~V~~v~~sp 295 (342)
|.+++... .....+..+.+.+...+|||
T Consensus 405 L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 88888754 34455555566778888887
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.1e-11 Score=105.74 Aligned_cols=245 Identities=13% Similarity=0.119 Sum_probs=165.1
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCC---ceEEEEEeC-CCCeEEEecCCcEEEEEeccC
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGG---PVLDCCFHD-DSSGFSASADHTVRRLVFSHG 91 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~---~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~ 91 (342)
++|...|++|+|....+.|.+|+.|++|.+.|+.+...+....|.+ .|+.+..+| +..+++.+.++.+.+||....
T Consensus 102 ~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 102 HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred CccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 4566899999999999999999999999999998877777777765 899999875 666778899999999998655
Q ss_pred c----eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCccee--eeeecCCCC---cEEEEeccCCeEEE
Q 019384 92 K----EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERT--LVGTYPQPE---RVYSLSLVGNRLVV 161 (342)
Q Consensus 92 ~----~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~--~~~~~~~~~---~v~~~s~~~~~~~~ 161 (342)
. ...+..-.....++.|+|.. .+|++.+.-+.+.+||.+........ ......... -..-++.+++.+++
T Consensus 182 ~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 182 QNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred CCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence 4 22334455678889999966 56788888899999998753221100 001111111 12246667777776
Q ss_pred EEcCCeEEEEeCCCCCCcccccccccce--e---eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc---------
Q 019384 162 ATAGRHVNVYDLRNMSQPEQRRESSLKY--Q---TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK--------- 227 (342)
Q Consensus 162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~--------- 227 (342)
.-....=.+||+.....+..+..+...+ . +.++ ++.+...+++|+.+-.+ ++|-+.......-
T Consensus 262 iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~-~F~~D~~v~tGSD~~~i--~~WklP~~~ds~G~~~IG~~~~ 338 (609)
T KOG4227|consen 262 IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSM-TFIDDYTVATGSDHWGI--HIWKLPRANDSYGFTQIGHDEE 338 (609)
T ss_pred hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeee-eeecceeeeccCcccce--EEEecCCCccccCccccCcchh
Confidence 6666666778887755554444322211 1 1122 33444557777776544 5576533211111
Q ss_pred ------------ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384 228 ------------YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG 272 (342)
Q Consensus 228 ------------~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~ 272 (342)
..+++|+. .++.|.|+|...+|++.+....++||.-
T Consensus 339 ~~~~~~~i~~~~~VLrGHRS---------v~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 339 EMPSEIFIEKELTVLRGHRS---------VPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hCchhheecceeEEEecccc---------cccceeecCCcceEeccchhhheecccc
Confidence 12334443 4788999999999999999999999963
No 212
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.2e-10 Score=109.14 Aligned_cols=234 Identities=15% Similarity=0.115 Sum_probs=146.4
Q ss_pred CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEec---CCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE
Q 019384 41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASA---DHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI 116 (342)
Q Consensus 41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~---D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 116 (342)
..|.++|..+...+....|...+....|+|+++. +..+. +..|.+|++.++....+..+...+.+.+|+|||+.|+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 4788888877666655668889999999988764 34442 4579999998887666666777788899999998774
Q ss_pred -EeeCCCc--EEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-C--eEEEEeCCCCCCccccccccccee
Q 019384 117 -TGSWDKS--LKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-R--HVNVYDLRNMSQPEQRRESSLKYQ 190 (342)
Q Consensus 117 -sgs~D~~--I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-~--~v~iwd~~~~~~~~~~~~~~~~~~ 190 (342)
+.+.++. |.+||++++.. ..+...........++.+++.++..+.. + .|.++|+...... .... ....
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~---~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~--~lt~-~~~~ 335 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT---TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR--RISF-GGGR 335 (435)
T ss_pred EEEecCCCceEEEEECCCCce---EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--Eeec-CCCc
Confidence 6666665 66778765322 1222222222334677788888776643 3 5777887654221 1111 1122
Q ss_pred eEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC-----
Q 019384 191 TRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD----- 264 (342)
Q Consensus 191 ~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D----- 264 (342)
.....|+|+|+.++.... .+...+.++|..... .+. +.. + ..+....|+|||++|+..+.+
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~--lt~------~----~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERI--LTS------G----FLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEe--ccC------C----CCCCCCeECCCCCEEEEEEccCCCCC
Confidence 345679999999877654 344567778864321 111 110 0 124567899999988664432
Q ss_pred -CeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384 265 -GFVNVWDGNNKKRLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 265 -g~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp 295 (342)
..++++|+..+.. ..+. ..+.+...+|||
T Consensus 403 ~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 403 APKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred cceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 2577778765433 3443 234567777776
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=4e-12 Score=114.47 Aligned_cols=118 Identities=19% Similarity=0.124 Sum_probs=86.2
Q ss_pred eecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCcee--ecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCC
Q 019384 57 FMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKED--ILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRG 131 (342)
Q Consensus 57 ~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~--~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~ 131 (342)
.+|+|-|+++.|..++.+ ++||.|..+.+||.-..+.. +-.+|+..|.|+.|-|. +.+++||+.|..|+++|+..
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 479999999999866665 68999999999998765533 33789999999999994 46789999999999999874
Q ss_pred CCC--c------ceeeeeecCCCCcEE--EEec-cCCeEEEEEcCCeEEEEeCCCC
Q 019384 132 ASG--Q------ERTLVGTYPQPERVY--SLSL-VGNRLVVATAGRHVNVYDLRNM 176 (342)
Q Consensus 132 ~~~--~------~~~~~~~~~~~~~v~--~~s~-~~~~~~~~s~d~~v~iwd~~~~ 176 (342)
... . ....... +..++- ..+. .++.+.+++.||+++.+|+|..
T Consensus 127 ~~~~~~d~~~~~~~~~~~c--ht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSC--HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ccccccccCccchhhhhhh--hhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 211 0 0001111 122222 2333 3578999999999999999874
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=5.6e-10 Score=94.65 Aligned_cols=239 Identities=15% Similarity=0.220 Sum_probs=147.1
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCCc--eEEEEEeCCCCeEEEecC------CcEEEEEeccC
Q 019384 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGP--VLDCCFHDDSSGFSASAD------HTVRRLVFSHG 91 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~--V~~~~~~~~~~~~s~s~D------~~i~~w~~~~~ 91 (342)
...+++|+.|..-++.| .|.=.|||+++=-+...... +.+. +.-+.|-.+=..+.|+.+ ..+.+||-...
T Consensus 7 ~~lsvs~NQD~ScFava-~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVA-TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEE-ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 34569999887666655 45558999985311111111 1111 112222111122345544 36889995544
Q ss_pred ceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE---EcCCeE
Q 019384 92 KEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA---TAGRHV 168 (342)
Q Consensus 92 ~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~---s~d~~v 168 (342)
++..--....+|.++.+.+ ++|+.. .+++|.+|.....-+ ....+.....+...+++++..+.-+.+ ..-|.|
T Consensus 86 ~~i~el~f~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEEeccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChh-heeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 4433344567899999876 345544 578999998753222 122333334455666777654433333 333789
Q ss_pred EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384 169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248 (342)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 248 (342)
++-|+............++...+.|++..-+|..+|++|..|++ |++||..+.....+ ++ + |.+. ..|.+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL-IRIFdt~~g~~l~E--~R--R----G~d~-A~iy~ 231 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL-IRIFDTEDGTLLQE--LR--R----GVDR-ADIYC 231 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE-EEEEEcCCCcEeee--ee--c----CCch-heEEE
Confidence 99999765431112223455678999999999999999999995 68999876543322 22 1 1111 14899
Q ss_pred EEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384 249 IAFHPIYGTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 249 v~~sp~~~~l~sgs~Dg~I~iWd~~~ 274 (342)
++|||+..+||.+|.-||++|+.++.
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999998764
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=4.8e-11 Score=111.41 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=141.6
Q ss_pred CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEecC---CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE
Q 019384 41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASAD---HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI 116 (342)
Q Consensus 41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D---~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 116 (342)
..|.++|..+...+....+.+.+.+.+|+|+++.+ ..+.+ ..|.+|++.+++...+......+.+.+|+||++.|+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 46777777655555555678889999999887654 44432 348889998877555544445567899999998875
Q ss_pred -EeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc-CCeEEEEeCC--CCCCcccccccccceeeE
Q 019384 117 -TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA-GRHVNVYDLR--NMSQPEQRRESSLKYQTR 192 (342)
Q Consensus 117 -sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~-d~~v~iwd~~--~~~~~~~~~~~~~~~~~~ 192 (342)
+.+.|+...||.++...+.. ..+...........++.+++.++..+. ++...+|.+. .+.. ...... .....
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~--~~lt~~-g~~~~ 331 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA--QRVTFT-GSYNT 331 (427)
T ss_pred EEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce--EEEecC-CCCcC
Confidence 67778877777543222211 122222212223457778887776654 3556666543 3221 111111 11123
Q ss_pred EEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC---eEE
Q 019384 193 CVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG---FVN 268 (342)
Q Consensus 193 ~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg---~I~ 268 (342)
..+++|+|+.++..+. ++...+++||....... . +... . ......|+|||++|+.++.++ .++
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~--lt~~-~---------~~~~p~~spdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-A--LTDT-T---------RDESPSFAPNGRYILYATQQGGRSVLA 398 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-E--ccCC-C---------CccCceECCCCCEEEEEEecCCCEEEE
Confidence 4578999999876654 34456788887543211 1 1100 0 124568999999987776544 355
Q ss_pred EEeCCCceeeeccCCCCcceEEEEECC
Q 019384 269 VWDGNNKKRLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 269 iWd~~~~~~~~~~~~~~~~V~~v~~sp 295 (342)
+.+. ++...+.+..+.+.+...+|||
T Consensus 399 ~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 399 AVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EEEC-CCCceEEeecCCCCCCCCccCC
Confidence 5555 3444555555667788888887
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=4.8e-11 Score=108.17 Aligned_cols=241 Identities=17% Similarity=0.278 Sum_probs=160.5
Q ss_pred CCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeee-----------------------------ecCC-----
Q 019384 17 PPSDGISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEF-----------------------------MHGG----- 61 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~-----------------------------~h~~----- 61 (342)
+++..-+.|..+|||+++ |||-+-=.|++||+..-.+.-+. .|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 456677889999999985 57778899999998642211000 1211
Q ss_pred ------ceEEEEEe-CCCCeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC
Q 019384 62 ------PVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS 133 (342)
Q Consensus 62 ------~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~ 133 (342)
.-.+++++ +..-++.++....|..+++++++. ..+......+++|..++-.++|++|+.||.+..||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 11334443 444567777777888888888873 3455566889999999988999999999999999987532
Q ss_pred Ccceeeeee------cC---CCCcEEEEeccCC--eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce
Q 019384 134 GQERTLVGT------YP---QPERVYSLSLVGN--RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG 202 (342)
Q Consensus 134 ~~~~~~~~~------~~---~~~~v~~~s~~~~--~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 202 (342)
.. ..+.. +. ....+.++.+..+ .+++|+..|.+.|||+|.. .+.....+.-...+..+.|.+.++.
T Consensus 209 rv--~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 209 RV--GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hh--eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-CceeecccCCccceeeecccccCCC
Confidence 21 11111 11 1123667777553 7889999999999999985 3444444444456777778776555
Q ss_pred EEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 203 YALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 203 ~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
-.+.+.|..+ +++||-.+.+.-- .+ .....++.+|+-|++.++.++-++..+..|=+.
T Consensus 286 ~~v~S~Dk~~-~kiWd~~~Gk~~a--si----------Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 286 NKVVSMDKRI-LKIWDECTGKPMA--SI----------EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceEEecchHH-hhhcccccCCcee--ec----------cccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 4555556553 5789875442210 00 111248889999999999999998877776543
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=9.7e-11 Score=100.82 Aligned_cols=186 Identities=16% Similarity=0.137 Sum_probs=121.8
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeCC-CCeEEEecCCcEEEEEeccCc
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHDD-SSGFSASADHTVRRLVFSHGK 92 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~~~~ 92 (342)
+-.+..+.-++|.++-..+|++..|-+||+||-+... ...+ .-+..|.+++|-|. .+.++.+.-+-|.+|..+..-
T Consensus 95 ~ws~~dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tl 173 (445)
T KOG2139|consen 95 LWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL 173 (445)
T ss_pred hhhhcceeeEeechhhhhhhhhccCcEEEEeccCCCC-CceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence 3345678899999988889999999999999987632 2222 23567999999753 334555555667899764321
Q ss_pred -----ee--------ec--ccCCcceeEEEEeCCCCEEEEeeCC-CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC
Q 019384 93 -----ED--------IL--GKHDAPVRCIEYSYAAGQVITGSWD-KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG 156 (342)
Q Consensus 93 -----~~--------~~--~~h~~~V~~~~~~~~~~~l~sgs~D-~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~ 156 (342)
.+ ++ .+| .+|+++.|.+||..++++|.+ ..|+|||..++.+...... -........+++++
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPdg 250 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPDG 250 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCCC
Confidence 11 11 244 689999999999999998766 5799999987655322111 11223356788889
Q ss_pred CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc
Q 019384 157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS 207 (342)
Q Consensus 157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s 207 (342)
+.++.++-|+..++|+....-....... ....+..-.|+|+|..++...
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred CEEEEecccceeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEE
Confidence 9999999999999996543211111100 112334445778777665443
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.38 E-value=1.6e-11 Score=104.35 Aligned_cols=221 Identities=15% Similarity=0.158 Sum_probs=136.0
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-E-EEecCCcEEEEEeccCce-eecccCC
Q 019384 24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-F-SASADHTVRRLVFSHGKE-DILGKHD 100 (342)
Q Consensus 24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~-s~s~D~~i~~w~~~~~~~-~~~~~h~ 100 (342)
-.+|||+|+++|+++.- .+-|-|..+-.+...+..-+.|.-+.|..+... + .+..|+.|++|++.+.+. -.+....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 35899999999998765 677777766544444444456667788755543 3 456788999999988874 3455566
Q ss_pred cceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCc
Q 019384 101 APVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP 179 (342)
Q Consensus 101 ~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~ 179 (342)
..+.++.|+|||+ .|.+...|-.|.+|.+.+..+. .+...+...+.+++..++...+.++.-...-.+.+..-+.=
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~---~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY---LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeE---EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 7899999999995 5678889999999998764331 22223333456667767766555544311111111000000
Q ss_pred cccccccc-ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE
Q 019384 180 EQRRESSL-KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF 258 (342)
Q Consensus 180 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l 258 (342)
+....-.+ ....+.+.|+|||..+++ ||.--..... ..|... .+-.++|+|-+++|
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laV-----------wd~~Leykv~----aYe~~l--------G~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAV-----------WDNVLEYKVY----AYERGL--------GLKFVEWSPCNQFL 225 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEE-----------ecchhhheee----eeeecc--------ceeEEEeccccceE
Confidence 00000011 112456779999886653 5532111111 112211 37789999999999
Q ss_pred EEecCCCeEEEEe
Q 019384 259 ATGGCDGFVNVWD 271 (342)
Q Consensus 259 ~sgs~Dg~I~iWd 271 (342)
+.|+.|+.+||-+
T Consensus 226 avGsyD~~lrvln 238 (447)
T KOG4497|consen 226 AVGSYDQMLRVLN 238 (447)
T ss_pred Eeeccchhhhhhc
Confidence 9999999998854
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.1e-10 Score=107.55 Aligned_cols=205 Identities=13% Similarity=0.122 Sum_probs=129.0
Q ss_pred cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeC---CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384 82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSW---DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158 (342)
Q Consensus 82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~---D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~ 158 (342)
.|.++|.+......+..|...+.+.+|+||++.|+..+. +..|.+||++++.. ..+...........++++++.
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCCCCE
Confidence 566777766666667788889999999999998877654 35899999975432 223222222233467778877
Q ss_pred EE-EEEcCCe--EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEE
Q 019384 159 LV-VATAGRH--VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHR 234 (342)
Q Consensus 159 ~~-~~s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~ 234 (342)
++ +.+.++. |.+||+.++... ... ..........|+|+++.++..+ .++...++++|...... +. +..+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~--~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~--lt~~~ 333 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT--RLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RR--ISFGG 333 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE--Ecc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EE--eecCC
Confidence 65 4444544 777788765321 111 1122234578999999887766 34555677888643221 11 11110
Q ss_pred ecCCCCceeeeeeEEEEcCCCCeEEEecCC---CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCD---GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
..+....|+|+|+.|+..+.+ ..|.+||...+.. ..+. ....+..++|||||++|+..+..
T Consensus 334 ---------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 334 ---------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ---------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 124567899999998776533 3688888765432 2232 22357789999999998876653
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.36 E-value=9.3e-12 Score=111.89 Aligned_cols=185 Identities=17% Similarity=0.233 Sum_probs=121.5
Q ss_pred CCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee--cCCCCcEEEEec---cCCeEEEEEcCCeEEEEeCCCCCCcccccc
Q 019384 110 YAAGQVITGSWDKSLKCWDPRGASGQERTLVGT--YPQPERVYSLSL---VGNRLVVATAGRHVNVYDLRNMSQPEQRRE 184 (342)
Q Consensus 110 ~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~v~~~s~---~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~ 184 (342)
+++--++.|-.-|.+.+.|....+ ....+.. .-....+.++.+ +...++.+-.++.+.++|.... ...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~--~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-~~~---- 255 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFE--VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-CGA---- 255 (636)
T ss_pred CCCcceEEeeccCceEEecchhhH--HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-ccC----
Confidence 345557778888888888865311 1111110 111233455544 3457888899999999987431 000
Q ss_pred cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC
Q 019384 185 SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD 264 (342)
Q Consensus 185 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D 264 (342)
...+....+++..+.+....... +......|.+- ..+|+..+|+|||++||+-|.|
T Consensus 256 -----t~p~~~~~k~~~~f~i~t~ksk~--------~rNPv~~w~~~-----------~g~in~f~FS~DG~~LA~VSqD 311 (636)
T KOG2394|consen 256 -----TAPSYQALKDGDQFAILTSKSKK--------TRNPVARWHIG-----------EGSINEFAFSPDGKYLATVSQD 311 (636)
T ss_pred -----CCCcccccCCCCeeEEeeeeccc--------cCCccceeEec-----------cccccceeEcCCCceEEEEecC
Confidence 01122234455545443321110 01112222221 1268999999999999999999
Q ss_pred CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCccccCCCC
Q 019384 265 GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPKA 336 (342)
Q Consensus 265 g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (342)
|.+||+|..+.+++..++.+-+...|++|||||+||++|+.+| .+-||+..|.-|+-|+..
T Consensus 312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-----------LVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-----------LVTVWSFEERRVVARGQG 372 (636)
T ss_pred ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-----------eEEEEEeccceEEEeccc
Confidence 9999999999888887777788899999999999999999888 788899999999988764
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2e-10 Score=107.56 Aligned_cols=205 Identities=15% Similarity=0.101 Sum_probs=129.3
Q ss_pred cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384 82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158 (342)
Q Consensus 82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~ 158 (342)
.|.+||.+......+..|...+.+.+|+||++.|+..+.+ ..|.+||+.++.. ..+...........++.+++.
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---ELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---EEeccCCCCccCceECCCCCE
Confidence 4777887666556666777889999999999998877654 3699999875432 122222222233467777876
Q ss_pred EEE-EEcCC--eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEE
Q 019384 159 LVV-ATAGR--HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHR 234 (342)
Q Consensus 159 ~~~-~s~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~ 234 (342)
++. .+.++ .|.+||+.++.... .. .........+|+|+++.++..+. ++...++.+|...... .......
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~--lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g-- 335 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTR--LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQG-- 335 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEE--Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCC--
Confidence 654 44454 58999998764221 11 11112345789999998877663 4555677777643321 1111110
Q ss_pred ecCCCCceeeeeeEEEEcCCCCeEEEecCCC---eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDG---FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg---~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
......+|+|+|+.|+..+.++ .|.+||..+++.. .+. +.......+|+|||++|+..+..
T Consensus 336 ---------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 336 ---------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred ---------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec
Confidence 0133579999999987654332 6999999876543 333 22245678999999998877654
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.6e-10 Score=107.97 Aligned_cols=206 Identities=14% Similarity=0.075 Sum_probs=123.7
Q ss_pred cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384 82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158 (342)
Q Consensus 82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~ 158 (342)
.+.++|.+......+..+...+.+.+|+||++.|+..+.+ ..|.+||++++.. ..+...........++++++.
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---RVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---EEeecCCCCccceEECCCCCE
Confidence 3445555444444555677889999999999988776643 3599999975432 122222222334567778877
Q ss_pred EEE-EEcCCeEEEEe--CCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEE
Q 019384 159 LVV-ATAGRHVNVYD--LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHR 234 (342)
Q Consensus 159 ~~~-~s~d~~v~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~ 234 (342)
++. .+.++...||. +.... ...... .........|+|+|+.++..+. ++...++.++..... ........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~--~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g-- 327 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG--LRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTG-- 327 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC--cEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCC--
Confidence 764 56667666665 44332 111111 1122345679999998876654 455566556543221 11111110
Q ss_pred ecCCCCceeeeeeEEEEcCCCCeEEEecCCC---eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDG---FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg---~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
. .....+|+|+|++|+..+.++ .|++||..+++.. .+... ......+|+|||++|+.++...
T Consensus 328 -----~----~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 328 -----S----YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -----C----CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence 0 123468999999988766544 6999999876543 23322 2346889999999998877543
No 223
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.32 E-value=5.8e-10 Score=109.24 Aligned_cols=224 Identities=16% Similarity=0.155 Sum_probs=141.8
Q ss_pred EECCCceeeeeeecCCceEEEEEe-CC-CCeEEEecCCcEEEEEeccCc--------eeecccCCcceeEEEEeCCCCEE
Q 019384 46 YDASANVLRGEFMHGGPVLDCCFH-DD-SSGFSASADHTVRRLVFSHGK--------EDILGKHDAPVRCIEYSYAAGQV 115 (342)
Q Consensus 46 wd~~~~~~~~~~~h~~~V~~~~~~-~~-~~~~s~s~D~~i~~w~~~~~~--------~~~~~~h~~~V~~~~~~~~~~~l 115 (342)
|+..+-..-+...|+..|..++.+ +. ..++|||.||+|++|+...-. +.++.--+..+.++.+.+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 444433333445688888888887 44 345799999999999986432 11233346778899999999999
Q ss_pred EEeeCCCcEEEEcCCCCCCcceee--e--eecCCCCcEEEEec----cCC-eEEEEEcCCeEEEEeCCCCCCcccccccc
Q 019384 116 ITGSWDKSLKCWDPRGASGQERTL--V--GTYPQPERVYSLSL----VGN-RLVVATAGRHVNVYDLRNMSQPEQRRESS 186 (342)
Q Consensus 116 ~sgs~D~~I~iWd~~~~~~~~~~~--~--~~~~~~~~v~~~s~----~~~-~~~~~s~d~~v~iwd~~~~~~~~~~~~~~ 186 (342)
|.++.||.|++.+++......... . ........++.+-. ... .++.++.-+.|..||.+............
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 999999999999876411110000 0 11111222333321 122 56777888899999998754332222222
Q ss_pred cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC---CeEEE-ec
Q 019384 187 LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY---GTFAT-GG 262 (342)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~---~~l~s-gs 262 (342)
-.+.+++++.+|.+..+++|+..|.+ .+||++-......|.+..+. +++-|..+|-. ...++ ++
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l--~lWDLRF~~~i~sw~~P~~~----------~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQL--VLWDLRFRVPILSWEHPARA----------PIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceE--EEEEeecCceeecccCcccC----------CcceEEeeccCCCCceEEEecc
Confidence 23457889999999999999999875 46999765555555444331 45555555432 34444 44
Q ss_pred -CCCeEEEEeCCCceeeecc
Q 019384 263 -CDGFVNVWDGNNKKRLYQY 281 (342)
Q Consensus 263 -~Dg~I~iWd~~~~~~~~~~ 281 (342)
..+.|.+|+.+++.+-+.+
T Consensus 1262 ~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred cCCCceeeeecccCcceEEE
Confidence 5778999999987554433
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.32 E-value=1.1e-08 Score=93.26 Aligned_cols=288 Identities=16% Similarity=0.066 Sum_probs=149.3
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EE-ecCCcEEEEEeccCcee-ecc--
Q 019384 23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SA-SADHTVRRLVFSHGKED-ILG-- 97 (342)
Q Consensus 23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~-s~D~~i~~w~~~~~~~~-~~~-- 97 (342)
..+.|+|||+++.+++.||.|.++|+.+.+...++.-.....+++++++++.+ .+ -.++.+.++|.++.+.. .+.
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 34789999999999999999999999998888777777788899999887754 33 46889999998876632 221
Q ss_pred -----cCCcceeEEEEeCCCCEEEEeeCC-CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEE-EEcCCeEEE
Q 019384 98 -----KHDAPVRCIEYSYAAGQVITGSWD-KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVV-ATAGRHVNV 170 (342)
Q Consensus 98 -----~h~~~V~~~~~~~~~~~l~sgs~D-~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~-~s~d~~v~i 170 (342)
.....+..+-.++....++..-.| +.|-+-|...........+.. ...-.-..++.++.+++. +..++.|-+
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g~~~~D~~~dpdgry~~va~~~sn~i~v 198 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-GRFPHDGGFDPDGRYFLVAANGSNKIAV 198 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-cccccccccCcccceeeecccccceeEE
Confidence 133467777777877766655555 667666765432211111111 111112345556665554 466678999
Q ss_pred EeCCCCCCccccccc--ccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh--hcccceeeeEEecCCCCceeeee
Q 019384 171 YDLRNMSQPEQRRES--SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS--QAKKYAFKCHRKSEAGRDIVYPV 246 (342)
Q Consensus 171 wd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~--~~~~~~~~~h~~~~~~~~~~~~v 246 (342)
+|..+.......... ..+.....+ .+|....+......+...+-......-. ....|......+.. + .+
T Consensus 199 iD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~-G----~g- 271 (369)
T PF02239_consen 199 IDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ-G----GG- 271 (369)
T ss_dssp EETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S-S----SS-
T ss_pred EeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC-C----Cc-
Confidence 998875432211100 011111111 2343322222222121111111111000 00111111111110 1 12
Q ss_pred eEEEEcCCCCeEEEe----cCCCeEEEEeCCCceeeeccCCC-CcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEE
Q 019384 247 NAIAFHPIYGTFATG----GCDGFVNVWDGNNKKRLYQYSKY-PTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIF 321 (342)
Q Consensus 247 ~~v~~sp~~~~l~sg----s~Dg~I~iWd~~~~~~~~~~~~~-~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~ 321 (342)
.-+.-||++++|+.. ...++|.++|.++.+.+.++... ...+..++|++||+++-.+..+. .. .|+
T Consensus 272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~---~~------~i~ 342 (369)
T PF02239_consen 272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG---NG------AIV 342 (369)
T ss_dssp --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE-----TT------EEE
T ss_pred ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC---CC------EEE
Confidence 346779999999887 45689999999998777666422 23589999999999877654322 21 477
Q ss_pred EEEccC
Q 019384 322 VRSVNE 327 (342)
Q Consensus 322 ~~~~~~ 327 (342)
++.-..
T Consensus 343 v~D~~T 348 (369)
T PF02239_consen 343 VYDAKT 348 (369)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 776553
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.29 E-value=8e-10 Score=94.16 Aligned_cols=266 Identities=14% Similarity=0.127 Sum_probs=154.7
Q ss_pred CCCCCeEEEEEcCCCCe-EEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEec--CC------------
Q 019384 17 PPSDGISNLRFSNHSDH-LLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASA--DH------------ 81 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~-l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~--D~------------ 81 (342)
+..+++.+++|||||++ |.+...|-.|.||.+.+.+.....-.+..+..++|.++++..+-.. |.
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 34678999999999965 5577899999999998765433322334557778877776543221 11
Q ss_pred -----------------------cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCccee
Q 019384 82 -----------------------TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT 138 (342)
Q Consensus 82 -----------------------~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~ 138 (342)
.+.+||.--.........+-.+..++|+|-++.|+.|+.|+.+|+.+--+= .
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW-----k 243 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW-----K 243 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee-----e
Confidence 111222111000011223356889999999999999999999998552110 0
Q ss_pred eeeecCC------C---------Cc-----EEEEeccCCeEEEEEcCCeEEEEeCC-------CCCCccccccc-----c
Q 019384 139 LVGTYPQ------P---------ER-----VYSLSLVGNRLVVATAGRHVNVYDLR-------NMSQPEQRRES-----S 186 (342)
Q Consensus 139 ~~~~~~~------~---------~~-----v~~~s~~~~~~~~~s~d~~v~iwd~~-------~~~~~~~~~~~-----~ 186 (342)
.++.+.+ + .. .-++++.+.. -...+|... ..-.......+ .
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~-------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn 316 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD-------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN 316 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc-------cccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence 0110000 0 00 0122222211 011222211 10000011110 0
Q ss_pred cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe
Q 019384 187 LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF 266 (342)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~ 266 (342)
....+-.++|++|..++++....--..+|+||+..-. ..+.-. + .++|.+..|+|....|+.+.....
T Consensus 317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---l~avLi-Q--------k~piraf~WdP~~prL~vctg~sr 384 (447)
T KOG4497|consen 317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---LHAVLI-Q--------KHPIRAFEWDPGRPRLVVCTGKSR 384 (447)
T ss_pred cccccceeeecCCceEEeeecCCCCceEEEEechhhh---hhhhhh-h--------ccceeEEEeCCCCceEEEEcCCce
Confidence 1122345789999998888877766788999985321 111110 0 127999999999888888777778
Q ss_pred EEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 267 VNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 267 I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
+++|.......+.. .+-.-.|..+.|..+|..++..+.+-
T Consensus 385 LY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 385 LYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCc
Confidence 99998776554443 33335799999999999999887654
No 226
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.29 E-value=8.8e-12 Score=117.24 Aligned_cols=226 Identities=13% Similarity=0.144 Sum_probs=150.0
Q ss_pred eeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC
Q 019384 54 RGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131 (342)
Q Consensus 54 ~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~ 131 (342)
..+.+|-..|+|+.|. .+..+++++.|..+++|..++... ....||.+.|+.++.+.....++++|.|..|++|-+..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 3345799999999997 455578999999999999887764 35789999999999998888899999999999999875
Q ss_pred CCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccc----eeeEEEEEeeCCceEEEEc
Q 019384 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK----YQTRCVRCYPNGTGYALSS 207 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~s 207 (342)
+.. ...+.. ++..|.++.+.+- .+.+.||++++||.+-... .. ...+.+ ..+..+.+...+..+++++
T Consensus 264 ~~p--vsvLrg--htgavtaiafsP~--~sss~dgt~~~wd~r~~~~-~y-~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 264 GAP--VSVLRG--HTGAVTAIAFSPR--ASSSDDGTCRIWDARLEPR-IY-VPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred Cch--HHHHhc--cccceeeeccCcc--ccCCCCCceEecccccccc-cc-CCCCCCcccccceeeeecccccccccccc
Confidence 432 233333 4455666776653 3678899999999982111 00 000111 1122333444455566666
Q ss_pred cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC-CCeEEEecCCCeEEEEeCCCceeeeccCCCCc
Q 019384 208 VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI-YGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT 286 (342)
Q Consensus 208 ~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~-~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~ 286 (342)
.++.... |.... +.+|.. -+.-+.++.+ ..+.+++-.+..+.+|+..++..++.+.+|..
T Consensus 336 ~d~ea~n--~e~~~--------l~~~~~---------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 336 RDGEARN--HEFEQ--------LAWRSN---------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred CCccccc--chhhH--------hhhhcc---------ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 5554322 11100 001100 0111222222 23556677788899999999999999999999
Q ss_pred ceEEEEECCCCCEEEEEEec
Q 019384 287 SIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 287 ~V~~v~~spdg~~las~s~~ 306 (342)
.++.+.+.|=...++....+
T Consensus 397 ~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred ceeeeeecCCCcHhhhhccC
Confidence 99999999987777766553
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.29 E-value=2.1e-11 Score=107.85 Aligned_cols=264 Identities=15% Similarity=0.141 Sum_probs=183.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecc
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILG 97 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~ 97 (342)
+..+-+.+.++.+|++|+.|+.-|.+-.+|..+..+..++.-...|.++.|....+++......-+.+||-...+...+.
T Consensus 128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk 207 (545)
T KOG1272|consen 128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK 207 (545)
T ss_pred cccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehh
Confidence 35677899999999999999999999999999999999888888899999987777777777777777875544433444
Q ss_pred cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC--eEEEEEcCCeEEEEeCCC
Q 019384 98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLVVATAGRHVNVYDLRN 175 (342)
Q Consensus 98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--~~~~~s~d~~v~iwd~~~ 175 (342)
.| ..|..+.|-|-.-+|++++.-|.++.-|+..+... ..+.. ....+..+..++. .+-+|...|+|.+|.-..
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV--a~~~t--~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV--ASIRT--GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhhh--HHHHc--cCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 44 56888999997777888999999999998754321 11111 1222333444543 455778889999998765
Q ss_pred CCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC
Q 019384 176 MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY 255 (342)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~ 255 (342)
....... ..+...+.++++.++|.+.++.+.|..+. +||++...+...+.. ..+...++||..|
T Consensus 283 kePLvKi--LcH~g~V~siAv~~~G~YMaTtG~Dr~~k--IWDlR~~~ql~t~~t------------p~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 283 KEPLVKI--LCHRGPVSSIAVDRGGRYMATTGLDRKVK--IWDLRNFYQLHTYRT------------PHPASNLSLSQKG 346 (545)
T ss_pred cchHHHH--HhcCCCcceEEECCCCcEEeeccccccee--Eeeeccccccceeec------------CCCcccccccccc
Confidence 4322222 23445688999999999999999998764 599976543222111 1256778888654
Q ss_pred CeEEEecCCCeEEEEeC-CC--ceeeeccCCC--CcceEEEEECCCCCEEEEEE
Q 019384 256 GTFATGGCDGFVNVWDG-NN--KKRLYQYSKY--PTSIAALSFSRDGRLLAVAS 304 (342)
Q Consensus 256 ~~l~sgs~Dg~I~iWd~-~~--~~~~~~~~~~--~~~V~~v~~spdg~~las~s 304 (342)
++..|....|.||.- -. +..-..+..| .+.|..+.|.|-.-.|-.|-
T Consensus 347 --lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 347 --LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred --ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 444555668999942 22 1222233334 35899999999766665543
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.1e-09 Score=102.42 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=124.2
Q ss_pred CCCCeEEEEEcCCCCeEEEEeC---CCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE--EEecCC--cEEEEEecc
Q 019384 18 PSDGISNLRFSNHSDHLLVSSW---DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF--SASADH--TVRRLVFSH 90 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~---Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~--s~s~D~--~i~~w~~~~ 90 (342)
+...+.+.+|||||+.|+..+. +..+.+||+.+++........+.+....|+|+++.+ +.+.++ .|.+|++.+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3457889999999999986543 457999999877654443344556678999888754 334444 477888887
Q ss_pred CceeecccCCcceeEEEEeCCCCEEEEeeCC-CcEEEE--cCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC--
Q 019384 91 GKEDILGKHDAPVRCIEYSYAAGQVITGSWD-KSLKCW--DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-- 165 (342)
Q Consensus 91 ~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D-~~I~iW--d~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-- 165 (342)
+....+..+...+....|+||++.|+..+.+ +...|| |+.++. .. .+...........++++++.++..+.+
T Consensus 277 g~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 277 GQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred CCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eE-EeecCCCCccCEEECCCCCEEEEEEccCC
Confidence 7765555555567889999999988766654 455566 554322 11 121111122235677788888776544
Q ss_pred -CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe-EEEEEeec
Q 019384 166 -RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR-VAMEFFDL 219 (342)
Q Consensus 166 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~~i~~~d~ 219 (342)
..|.+||+.++.... .... .......|+|||+.++..+.++. ..+++++.
T Consensus 354 ~~~I~~~dl~~g~~~~--Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 354 QQHIAKQDLATGGVQV--LTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CceEEEEECCCCCeEE--eCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 358889987764221 1111 11234678999999888876543 34566665
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=6.3e-10 Score=107.36 Aligned_cols=154 Identities=13% Similarity=0.134 Sum_probs=118.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceE---EEEE--eCCC-CeEEEecCCcEEEEEeccC
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVL---DCCF--HDDS-SGFSASADHTVRRLVFSHG 91 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~---~~~~--~~~~-~~~s~s~D~~i~~w~~~~~ 91 (342)
-+++|..-.+.-+..+++.+..++.+-+||...+.......+..... ++.+ +.+. .+++|+.-+.+.+|.+...
T Consensus 86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 35667776667777889999999999999998877766666655432 2222 2222 2357778888999988744
Q ss_pred cee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384 92 KED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV 170 (342)
Q Consensus 92 ~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i 170 (342)
+.. .+.+|.+.|.++.++-+|.+++|.|.|++||+|++++..... ...+.|+.++..+.+.++.+++++.|-+.++
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n~i~t~gedctcrv 242 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPNRIITVGEDCTCRV 242 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccceeEEeccceEEEE
Confidence 433 488999999999999999999999999999999998654321 2345678889999998889999999999999
Q ss_pred EeCC
Q 019384 171 YDLR 174 (342)
Q Consensus 171 wd~~ 174 (342)
|+..
T Consensus 243 W~~~ 246 (967)
T KOG0974|consen 243 WGVN 246 (967)
T ss_pred Eecc
Confidence 9654
No 230
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=5.2e-11 Score=114.63 Aligned_cols=115 Identities=22% Similarity=0.279 Sum_probs=101.9
Q ss_pred CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee--eeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc
Q 019384 15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR--GEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK 92 (342)
Q Consensus 15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~--~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~ 92 (342)
..+|++.|+++.|+.||.+++|.|.|.++|+|++.+++.. .-++|...|+.++|.+. .+++++.|.+.++|......
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~ 249 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQ 249 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecccce
Confidence 4789999999999999999999999999999999887643 45789999999999988 88999999999999776666
Q ss_pred eeecccCC-cceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384 93 EDILGKHD-APVRCIEYSYAAGQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 93 ~~~~~~h~-~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~ 130 (342)
...+.+|. +.|+.++..++.-.++|++.|+++++||+.
T Consensus 250 l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 250 LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 56777776 569999999888889999999999999975
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=3.8e-10 Score=100.62 Aligned_cols=243 Identities=14% Similarity=0.127 Sum_probs=158.6
Q ss_pred ecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccCce--eecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCC
Q 019384 58 MHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGA 132 (342)
Q Consensus 58 ~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~~--~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~ 132 (342)
.|.|.|..+.|...+ .++++|.|..+.+|||..... ....+|...|.+..|-|. ..-|++++.||.+++=.+...
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 599999999998544 567899999999999988764 345789999998888884 356899999999998765422
Q ss_pred CCcc-eeeeeecCCCCcEEEEec-cCCeEEEEEcCCeEEEEeCCCCCCccc--ccccccc--eeeEEEEEeeCCc-eEEE
Q 019384 133 SGQE-RTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYDLRNMSQPEQ--RRESSLK--YQTRCVRCYPNGT-GYAL 205 (342)
Q Consensus 133 ~~~~-~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd~~~~~~~~~--~~~~~~~--~~~~~v~~~~~~~-~~~~ 205 (342)
.... ...+..+..+...+.+.+ ++..|.+++.|+-+.-+|++....... ......+ .....++..|... .+++
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 2211 122333333333344444 466899999999999999987633211 1111111 3455677778765 6788
Q ss_pred EccCCeEEEEEeechhhhhc-----ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC--Cc---
Q 019384 206 SSVEGRVAMEFFDLSEASQA-----KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN--NK--- 275 (342)
Q Consensus 206 ~s~~~~~~i~~~d~~~~~~~-----~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~--~~--- 275 (342)
+..+..++ +||.+..... ...-.+.|.. ..+.+ .|++++|+-++.-|.+.-.|-.|+++... .+
T Consensus 300 gG~dqf~R--vYD~R~~~~e~~n~~~~~f~p~hl~---~d~~v-~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 300 GGSDQFAR--VYDQRRIDKEENNGVLDKFCPHHLV---EDDPV-NITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred CChhhhhh--hhcccchhhccccchhhhcCCcccc---ccCcc-cceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 88777654 5887643221 0111111211 12222 48999999777766666677789999532 12
Q ss_pred -------eeee-ccCCCCc--ceEEEEE-CCCCCEEEEEEec
Q 019384 276 -------KRLY-QYSKYPT--SIAALSF-SRDGRLLAVASSY 306 (342)
Q Consensus 276 -------~~~~-~~~~~~~--~V~~v~~-spdg~~las~s~~ 306 (342)
..+. .++||.+ .|..+-| .|...|+++||.=
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC 415 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence 1222 3788865 6888887 8999999998863
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=6.8e-09 Score=97.33 Aligned_cols=234 Identities=11% Similarity=0.054 Sum_probs=138.9
Q ss_pred cEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEecC---CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE-
Q 019384 42 SVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASAD---HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI- 116 (342)
Q Consensus 42 ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D---~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~- 116 (342)
.|.++|..++.......+...+....|+|+++.+ ..+.+ ..|.+|++.++....+......+...+|+|||+.|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 4777787766655555677888999999887654 44433 247788888777555544444556789999998876
Q ss_pred EeeCCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-C--eEEEEeCCCCCCcccccccccceee
Q 019384 117 TGSWDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-R--HVNVYDLRNMSQPEQRRESSLKYQT 191 (342)
Q Consensus 117 sgs~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~ 191 (342)
+.+.++ .|.+||++++.. ..+...........++.+++.++..+.. + .|.++|+.+++.... ... ....
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l--t~~-~~~~ 333 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQL---SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV--TFV-GNYN 333 (430)
T ss_pred EEccCCCceEEEEECCCCCe---EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe--ecC-CCCc
Confidence 555555 578889875432 1122222222234567777777766542 2 477778766532111 111 1112
Q ss_pred EEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC-C--eE
Q 019384 192 RCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD-G--FV 267 (342)
Q Consensus 192 ~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D-g--~I 267 (342)
....++|+++.++..+. ++...++++|...... +. +. +. . ......|+|||++|+..+.+ + .|
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~--lt-~~----~-----~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RI--LT-DT----S-----LDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EE--cc-CC----C-----CCCCceECCCCCEEEEEEecCCceEE
Confidence 34568999998877654 4445677788754321 11 11 00 0 01134799999988765543 3 46
Q ss_pred EEEeCCCceeeeccCCCCcceEEEEECC
Q 019384 268 NVWDGNNKKRLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 268 ~iWd~~~~~~~~~~~~~~~~V~~v~~sp 295 (342)
.+++... ...+.+..+.+.+...+|||
T Consensus 401 ~~~~~~g-~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 401 MLVSING-RVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEEECCC-CceEECcCCCCCcCCCccCC
Confidence 6777753 33344554556677888887
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.20 E-value=6.7e-09 Score=96.92 Aligned_cols=114 Identities=15% Similarity=0.053 Sum_probs=80.9
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCC---CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-E-EEecCC--cEEEEEecc
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWD---KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-F-SASADH--TVRRLVFSH 90 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~D---gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~-s~s~D~--~i~~w~~~~ 90 (342)
+...+.+.+|+|||++|+.++.+ ..|++||+.+++......+.+.+.++.|++++.. + +.+.++ .|.+|++.+
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 34468899999999999987654 4899999988765555556677778899987764 3 444444 477788877
Q ss_pred CceeecccCCcceeEEEEeCCCCEEEEeeCC-C--cEEEEcCCC
Q 019384 91 GKEDILGKHDAPVRCIEYSYAAGQVITGSWD-K--SLKCWDPRG 131 (342)
Q Consensus 91 ~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D-~--~I~iWd~~~ 131 (342)
+....+..+........|+|+++.|+.++.. + .|.++|+.+
T Consensus 268 ~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 268 KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 7655555555555677899999988765543 3 466667653
No 234
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=8.2e-10 Score=100.69 Aligned_cols=181 Identities=14% Similarity=0.117 Sum_probs=117.8
Q ss_pred CCCCEEEEeeCCCcEEEEcCCCCCCcc-eeeeeecCCCCcE--EEEecc------------------CCeEEEEEcCCeE
Q 019384 110 YAAGQVITGSWDKSLKCWDPRGASGQE-RTLVGTYPQPERV--YSLSLV------------------GNRLVVATAGRHV 168 (342)
Q Consensus 110 ~~~~~l~sgs~D~~I~iWd~~~~~~~~-~~~~~~~~~~~~v--~~~s~~------------------~~~~~~~s~d~~v 168 (342)
|...++|....||.+|+||...+.... ............. ..+... -..++.|+..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 345789999999999999986543210 1111111111111 112111 1257888999999
Q ss_pred EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384 169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248 (342)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 248 (342)
.+|++..++.........+...++++....+-..+.+++.|..+ .+|+..+....+++ .+.+ ..+.+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v--~~~~~~~~~~~~~~--~~~~---------~~~~s 149 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKV--VYILEKEKVIIRIW--KEQK---------PLVSS 149 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeE--EEEecccceeeeee--ccCC---------Cccce
Confidence 99999876433222223344556666666555566777766655 45666433222221 1111 14788
Q ss_pred EEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCC-----CCEEEEEEe
Q 019384 249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD-----GRLLAVASS 305 (342)
Q Consensus 249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spd-----g~~las~s~ 305 (342)
++.+|||.+|++++ ++|++||+++++.+.+|++|.++|.+++|--+ |+++.++..
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc
Confidence 99999999999987 58999999999999999999999999999887 888776654
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.19 E-value=9.2e-10 Score=91.26 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=82.1
Q ss_pred CCCeEEEEEcCCCCeEEE--EeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEec---CCcEEEEEeccCc
Q 019384 19 SDGISNLRFSNHSDHLLV--SSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASA---DHTVRRLVFSHGK 92 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s--~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~---D~~i~~w~~~~~~ 92 (342)
...|.+++|+|+|+.+|. |..++.|.|||++...+. .+ +.+.+..+.|+|+++.+ +|+. .|.+.+||....+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~-~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIF-SF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeE-ee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 345999999999999764 446789999999743333 33 45778899999888764 5553 3569999998665
Q ss_pred eeecccCCcceeEEEEeCCCCEEEEeeC------CCcEEEEcCC
Q 019384 93 EDILGKHDAPVRCIEYSYAAGQVITGSW------DKSLKCWDPR 130 (342)
Q Consensus 93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~------D~~I~iWd~~ 130 (342)
......|. .+..++|+|+|++|++++. |..++||+..
T Consensus 137 ~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 137 KISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 44333444 4789999999999988764 7889999974
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.18 E-value=5.6e-09 Score=97.45 Aligned_cols=206 Identities=14% Similarity=0.144 Sum_probs=126.3
Q ss_pred cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384 82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158 (342)
Q Consensus 82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~ 158 (342)
.|.++|........+..+...+.+.+|+||+++|+.++.+ ..|.+||+.++.. ..+...........++.+++.
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---EKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEeecCCCCccceEECCCCCE
Confidence 4666666555555566677788999999999998876654 4799999875432 122222222223456777776
Q ss_pred EEEE-EcCC--eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEE
Q 019384 159 LVVA-TAGR--HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHR 234 (342)
Q Consensus 159 ~~~~-s~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~ 234 (342)
++.. +.++ .|.+||+.+..... .. ..........++|+++.++..+. .+...++.+|...... . .+..+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~--l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~--~l~~~~ 321 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTR--LT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-R--RLTFRG 321 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEE--CC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-E--EeecCC
Confidence 6644 4343 58888987653211 11 11111234568899988776653 4555677777643221 1 111110
Q ss_pred ecCCCCceeeeeeEEEEcCCCCeEEEecCCC---eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDG---FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg---~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
..+...+|+|+|++|+.++.++ .|.+||..++.. ..+... ......+|+|||++|+..+..+
T Consensus 322 ---------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 322 ---------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ---------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 1245678999999998887765 799999887543 222222 2345678999999998887643
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=9.8e-09 Score=96.40 Aligned_cols=234 Identities=10% Similarity=0.031 Sum_probs=135.9
Q ss_pred cEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEec-CC--cEEEEEeccCceeecccCCcceeEEEEeCCCCEEE-
Q 019384 42 SVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASA-DH--TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI- 116 (342)
Q Consensus 42 ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~-D~--~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~- 116 (342)
.+.++|..+...+....+...+.+..|+|+++.+ ..+. ++ .|.+|++.+++...+..........+|+||++.|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 5677787665555555567788899999888754 3332 33 46777877766544433333445789999999775
Q ss_pred EeeCCCc--EEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc-CC--eEEEEeCCCCCCcccccccccceee
Q 019384 117 TGSWDKS--LKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA-GR--HVNVYDLRNMSQPEQRRESSLKYQT 191 (342)
Q Consensus 117 sgs~D~~--I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~ 191 (342)
+.+.++. |.++|++++.. ..+...........++.+++.++..+. ++ .|.++|+.+++....... ....
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~---~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~---g~~~ 352 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKAL---TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE---GEQN 352 (448)
T ss_pred EEeCCCCeEEEEEECCCCCe---EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC---CCCC
Confidence 4566665 66778764322 112221112223456777777766553 33 466667765532111111 1112
Q ss_pred EEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC-CC--eE
Q 019384 192 RCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC-DG--FV 267 (342)
Q Consensus 192 ~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-Dg--~I 267 (342)
...+++|+|+.++..+. ++...|+.+|..+... .. +... . ......|+|+|++|+..+. ++ .+
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~--lt~~-----~-----~d~~ps~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QV--LTST-----R-----LDESPSVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EE--ccCC-----C-----CCCCceECCCCCEEEEEEecCCceEE
Confidence 23578999998877654 4455677777654321 11 1100 0 0112479999998766543 33 37
Q ss_pred EEEeCCCceeeeccCCCCcceEEEEECC
Q 019384 268 NVWDGNNKKRLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 268 ~iWd~~~~~~~~~~~~~~~~V~~v~~sp 295 (342)
++++.+ ++..+.+..+.+.+...+|||
T Consensus 420 ~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 420 AAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEECC-CCceEECcCCCCCcCCCccCC
Confidence 777764 555556666666778888887
No 238
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=4.5e-09 Score=90.71 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=120.9
Q ss_pred ceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---CeEEEEEcCCeEEEEeCCCCCC
Q 019384 102 PVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---NRLVVATAGRHVNVYDLRNMSQ 178 (342)
Q Consensus 102 ~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---~~~~~~s~d~~v~iwd~~~~~~ 178 (342)
-++.++|++.-..++.+..|-+||++|... +. ...+.+. ....+.++.+.+ ..++++... .|.+|.......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~--pt~Lks~-sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TC--PTKLKSV-SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CC--Cceecch-hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 467899998666789999999999999764 22 1233332 234466666643 456666654 599997643211
Q ss_pred c-----------ccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384 179 P-----------EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247 (342)
Q Consensus 179 ~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~ 247 (342)
. .+....+-...++++.|.+||..+++++-+.. .+.+||........... +. .+.++
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss-si~iWdpdtg~~~pL~~-----~g------lgg~s 242 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS-SIMIWDPDTGQKIPLIP-----KG------LGGFS 242 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc-eEEEEcCCCCCcccccc-----cC------CCcee
Confidence 1 01111112245788999999998888876544 56789986543322110 00 12477
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEeCCC-ceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 248 AIAFHPIYGTFATGGCDGFVNVWDGNN-KKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~-~~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
-+.|||||.+|..+.-|+..++|.... .....- .--.++|....|+|+|++|.-+++
T Consensus 243 lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw-~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 243 LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW-ILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred eEEEcCCCCEEEEecccceeeeehhcccceecce-eccCCceeeeeecCCCCEEEEEEc
Confidence 899999999999999999999995443 222221 223348999999999997776654
No 239
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.13 E-value=4e-10 Score=93.22 Aligned_cols=152 Identities=15% Similarity=0.192 Sum_probs=103.4
Q ss_pred CCeEEEEEcCC--CCeE-EEEeCCCcEEEEECCCce-e----------eeeeecCCceEEEEEe-CCCCeEEEecCCcEE
Q 019384 20 DGISNLRFSNH--SDHL-LVSSWDKSVRLYDASANV-L----------RGEFMHGGPVLDCCFH-DDSSGFSASADHTVR 84 (342)
Q Consensus 20 ~~V~~l~fs~~--~~~l-~s~s~Dgti~vwd~~~~~-~----------~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~ 84 (342)
+.+.+..+.-+ .+.| +.|=.+|.+-+||++++. . .....|+++|.++.|. .-.+-++++.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 45555554332 2334 455567999999998762 1 1223589999999996 334558888888888
Q ss_pred EEEeccCc--ee---ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE
Q 019384 85 RLVFSHGK--ED---ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL 159 (342)
Q Consensus 85 ~w~~~~~~--~~---~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~ 159 (342)
.|.+.... .. .+.--...|..+..-||++.+||++||+.||+|.-++... ...+..|......++|+.+.+.+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCchh
Confidence 88876542 11 1111234578888899999999999999999999876433 23444444333334444455688
Q ss_pred EEEEcCCeEEEEeC
Q 019384 160 VVATAGRHVNVYDL 173 (342)
Q Consensus 160 ~~~s~d~~v~iwd~ 173 (342)
++++.|.+|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.12 E-value=2.1e-10 Score=101.70 Aligned_cols=198 Identities=20% Similarity=0.169 Sum_probs=135.5
Q ss_pred CCCCccCC-CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCCceEEEEEeCCCCeE-EEecCCcEE
Q 019384 8 PTSGRELG-NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-SASADHTVR 84 (342)
Q Consensus 8 ~~~~~~~~-~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~~~~~~~~~~~-s~s~D~~i~ 84 (342)
-.+|-||+ -.....|+.+.|-|-=-+|++++.-|-++--|++.|++...+. -.+.+..++..|-..++ +|...|+|.
T Consensus 197 D~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 197 DNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS 276 (545)
T ss_pred cCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence 35677777 3446789999999988889999999999999999988766543 34556566666655555 778899999
Q ss_pred EEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEE
Q 019384 85 RLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVAT 163 (342)
Q Consensus 85 ~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s 163 (342)
+|.....+. ..+.-|.++|.++++.++|.+++|.+.|..++|||+++.. +. ..+..+.....++++...+++++
T Consensus 277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql----~t~~tp~~a~~ls~SqkglLA~~ 351 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QL----HTYRTPHPASNLSLSQKGLLALS 351 (545)
T ss_pred ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-cc----ceeecCCCccccccccccceeee
Confidence 998776653 3456799999999999999999999999999999998633 11 11111222334666666678888
Q ss_pred cCCeEEEEe-CCCCC-Cccc-ccccccceeeEEEEEeeCCceEEEEccCC
Q 019384 164 AGRHVNVYD-LRNMS-QPEQ-RRESSLKYQTRCVRCYPNGTGYALSSVEG 210 (342)
Q Consensus 164 ~d~~v~iwd-~~~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 210 (342)
.+..|.||. ...++ .... -..+.....+..+.|.|-...+-+|-..|
T Consensus 352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 888999994 33321 1110 11122334555666666554444444433
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.4e-08 Score=92.24 Aligned_cols=288 Identities=18% Similarity=0.156 Sum_probs=170.5
Q ss_pred ccCCCCCCCCeEEEEEcCCCCeEEE-----EeCCCc-----EEEEECCCceeeeeee--cCCceEEEEEeCCCCeEEEec
Q 019384 12 RELGNPPSDGISNLRFSNHSDHLLV-----SSWDKS-----VRLYDASANVLRGEFM--HGGPVLDCCFHDDSSGFSASA 79 (342)
Q Consensus 12 ~~~~~~~~~~V~~l~fs~~~~~l~s-----~s~Dgt-----i~vwd~~~~~~~~~~~--h~~~V~~~~~~~~~~~~s~s~ 79 (342)
..++.... .++.|.|||-+.+|.| --.|++ +++|++.++.....+. .+.. ++..|+.|..++.--.
T Consensus 67 ~~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv 144 (566)
T KOG2315|consen 67 VVLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLV 144 (566)
T ss_pred EEEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhh
Confidence 44454455 7889999998888764 223333 5589888754443332 1222 6788887776654445
Q ss_pred CCcEEEEEeccCceeecccCCcceeEEEEeCCC--CEEE-----EeeCCCcEEEEcCCCCCCcceeee--eecCCCCcEE
Q 019384 80 DHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAA--GQVI-----TGSWDKSLKCWDPRGASGQERTLV--GTYPQPERVY 150 (342)
Q Consensus 80 D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~--~~l~-----sgs~D~~I~iWd~~~~~~~~~~~~--~~~~~~~~v~ 150 (342)
.+.+.+++....+...-.-|...|..+.++|.. ..++ ..+.-..+|||...- .... ..+ ..+- ...-+
T Consensus 145 ~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~-~~~~-~~~a~ksFF-kadkv 221 (566)
T KOG2315|consen 145 SNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE-EGQH-QPVANKSFF-KADKV 221 (566)
T ss_pred cceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc-cccc-chhhhcccc-cccee
Confidence 567888887764432223467788999999863 2343 245556899997641 1111 111 1110 11123
Q ss_pred EEecc--CC-eEEEEEcC-----------CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEE
Q 019384 151 SLSLV--GN-RLVVATAG-----------RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF 216 (342)
Q Consensus 151 ~~s~~--~~-~~~~~s~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~ 216 (342)
.+.++ +. .|+.++.| .++.+.+....+.... ..-.+.+-++.|+|++..++++-.--=-.+.+
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~---L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP---LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe---cCCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence 44444 22 33333333 2466666652211111 11234677899999998877664322223456
Q ss_pred eechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec---CCCeEEEEeCCCceeeeccCCCCcceEEEEE
Q 019384 217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG---CDGFVNVWDGNNKKRLYQYSKYPTSIAALSF 293 (342)
Q Consensus 217 ~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs---~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~ 293 (342)
||.+.. -.+.+. .+|=+++-|+|.|++|+.++ .-|.|-|||+.+.+++..+..- .-+-++|
T Consensus 299 fnlr~~---~v~df~-----------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW 362 (566)
T KOG2315|consen 299 FNLRGK---PVFDFP-----------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEW 362 (566)
T ss_pred EcCCCC---EeEeCC-----------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEE
Confidence 776422 111111 12567899999999988876 4679999999998888776543 3467899
Q ss_pred CCCCCEEEEEEec-cccC--CCCCCCCCcEEEE
Q 019384 294 SRDGRLLAVASSY-TFEE--GDKPHEPDAIFVR 323 (342)
Q Consensus 294 spdg~~las~s~~-~~~~--~~~~~~~~~~~~~ 323 (342)
+|||++|+++.-. ..+. |-|++++.+-+++
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 9999999988853 4443 4466666666664
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.10 E-value=1.7e-06 Score=78.64 Aligned_cols=278 Identities=14% Similarity=0.113 Sum_probs=152.6
Q ss_pred EEEEeCC----CcEEEEEC--CCceee--eeeecCCceEEEEEeCCCCe-EEEec----CCcEEEEEeccC--ceeec--
Q 019384 34 LLVSSWD----KSVRLYDA--SANVLR--GEFMHGGPVLDCCFHDDSSG-FSASA----DHTVRRLVFSHG--KEDIL-- 96 (342)
Q Consensus 34 l~s~s~D----gti~vwd~--~~~~~~--~~~~h~~~V~~~~~~~~~~~-~s~s~----D~~i~~w~~~~~--~~~~~-- 96 (342)
++.|+++ +.|.+|++ .++++. ...........+++++++.. +++.. ++.|..|.+... ....+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566766 68888888 344432 22334455667888766665 45544 457888887664 32221
Q ss_pred -ccCCcceeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCccee-eeeec---------C--CCCcEEEEeccCCeEEEE
Q 019384 97 -GKHDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERT-LVGTY---------P--QPERVYSLSLVGNRLVVA 162 (342)
Q Consensus 97 -~~h~~~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~-~~~~~---------~--~~~~v~~~s~~~~~~~~~ 162 (342)
......-..++++|+++.|+.+. .+++|.++++......... ....+ + .+...+.++++++.+++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 11233456788999999887765 5789999998753211111 01100 0 011123466666766655
Q ss_pred Ec-CCeEEEEeCCCCCCcc-c--ccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhc--ccceeeeEEe
Q 019384 163 TA-GRHVNVYDLRNMSQPE-Q--RRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQA--KKYAFKCHRK 235 (342)
Q Consensus 163 s~-d~~v~iwd~~~~~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~--~~~~~~~h~~ 235 (342)
.. ...|.+|++....... . ...........-+.++|+++.+.+. ..++++.+ ++....... ....+.....
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v--~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV--FDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE--EEEETTTTEEEEEEEEESCET
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE--EeecccCCceeEEEEeeeccc
Confidence 33 3579999987653111 1 1111223345678899999876554 55666655 454311111 1111111111
Q ss_pred cCCCCceeeeeeEEEEcCCCCeEEE-ecCCCeEEEEeCC--Cc--eeeeccCCCCcceEEEEECCCCCEEEEEEeccccC
Q 019384 236 SEAGRDIVYPVNAIAFHPIYGTFAT-GGCDGFVNVWDGN--NK--KRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEE 310 (342)
Q Consensus 236 ~~~~~~~~~~v~~v~~sp~~~~l~s-gs~Dg~I~iWd~~--~~--~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~ 310 (342)
...+ ......|+++|||++|.+ ...+.+|.+|++. ++ +.+..+......-..++|+|||++|+++....
T Consensus 240 ~~~~---~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s--- 313 (345)
T PF10282_consen 240 GFTG---ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS--- 313 (345)
T ss_dssp TSCS---SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT---
T ss_pred cccc---cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC---
Confidence 0000 113567899999998654 5567799999983 23 23333332334468999999999999987533
Q ss_pred CCCCCCCCcEEEEEcc
Q 019384 311 GDKPHEPDAIFVRSVN 326 (342)
Q Consensus 311 ~~~~~~~~~~~~~~~~ 326 (342)
+.|.+++++
T Consensus 314 -------~~v~vf~~d 322 (345)
T PF10282_consen 314 -------NTVSVFDID 322 (345)
T ss_dssp -------TEEEEEEEE
T ss_pred -------CeEEEEEEe
Confidence 247777664
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.07 E-value=6.2e-08 Score=88.33 Aligned_cols=268 Identities=17% Similarity=0.075 Sum_probs=139.1
Q ss_pred CeE-EEEeCCCcEEEEECCCceeeeeeecCCce-EEEEEeCCCC-eEEEecCCcEEEEEeccCceeecccCCcceeEEEE
Q 019384 32 DHL-LVSSWDKSVRLYDASANVLRGEFMHGGPV-LDCCFHDDSS-GFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEY 108 (342)
Q Consensus 32 ~~l-~s~s~Dgti~vwd~~~~~~~~~~~h~~~V-~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~ 108 (342)
+++ ++-..++.|.|.|..+.+....+...+.+ ..+.|+++++ ++.++.|+.+.++|+.+.+......-...-.++++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV 85 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence 344 45678899999999988877776655555 4467887665 56888899999999999874322223345678999
Q ss_pred eCCCCEEEEe-eCCCcEEEEcCCCCCCcceeeeeecC---CCCcEEEEe--ccCCeEEEEEcC-CeEEEEeCCCCCCccc
Q 019384 109 SYAAGQVITG-SWDKSLKCWDPRGASGQERTLVGTYP---QPERVYSLS--LVGNRLVVATAG-RHVNVYDLRNMSQPEQ 181 (342)
Q Consensus 109 ~~~~~~l~sg-s~D~~I~iWd~~~~~~~~~~~~~~~~---~~~~v~~~s--~~~~~~~~~s~d-~~v~iwd~~~~~~~~~ 181 (342)
++||++++.+ ..++.+.++|.++.+........... ...++..+. .....++.+-.+ +.|-+.|....+....
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 9999988755 57899999998764332111111111 122343443 233445555554 7788888876533221
Q ss_pred ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee--eeEEecCCCCce--eeeeeEEEEcCCCCe
Q 019384 182 RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF--KCHRKSEAGRDI--VYPVNAIAFHPIYGT 257 (342)
Q Consensus 182 ~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~--~~h~~~~~~~~~--~~~v~~v~~sp~~~~ 257 (342)
... ..........+.|++++++++....+ .+-++|..+......... ..|.....+..| .+++.+.. -.+.+
T Consensus 166 ~~i-~~g~~~~D~~~dpdgry~~va~~~sn-~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~--~~~~~ 241 (369)
T PF02239_consen 166 TTI-KVGRFPHDGGFDPDGRYFLVAANGSN-KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS--GLGYF 241 (369)
T ss_dssp EEE-E--TTEEEEEE-TTSSEEEEEEGGGT-EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE--BSSSS
T ss_pred eee-cccccccccccCcccceeeecccccc-eeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec--cccce
Confidence 111 11112345678899988776543222 445577654322111100 011110000000 01222111 11233
Q ss_pred EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384 258 FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304 (342)
Q Consensus 258 l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s 304 (342)
.++.-....+.+||..+.+.++++...... .-+.-+||+++|.+..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~ 287 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDT 287 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeec
Confidence 322222335667888888888887765555 6788899999999873
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-08 Score=87.58 Aligned_cols=249 Identities=15% Similarity=0.197 Sum_probs=153.7
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-----eeeee-ecC------------CceEEEEEeCCC---CeEEE
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-----LRGEF-MHG------------GPVLDCCFHDDS---SGFSA 77 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-----~~~~~-~h~------------~~V~~~~~~~~~---~~~s~ 77 (342)
.+-|.+|-|+..|.+||||..+|.|-+|.-.... ..+++ .|. ..|..+.|.+.+ ..+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999854211 22222 343 357888997443 34677
Q ss_pred ecCCcEEEEEeccCceee-------------------------------------cccCCcceeEEEEeCCCCEEEEeeC
Q 019384 78 SADHTVRRLVFSHGKEDI-------------------------------------LGKHDAPVRCIEYSYAAGQVITGSW 120 (342)
Q Consensus 78 s~D~~i~~w~~~~~~~~~-------------------------------------~~~h~~~V~~~~~~~~~~~l~sgs~ 120 (342)
+.|.+|++|-+..+.... -..|+--|+++.++.|...++|+ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999875432110 01477889999999988877764 6
Q ss_pred CCcEEEEcCCCCCCcceeeeeecCC-----CCcEEEEecc---CCeEEEEEcCCeEEEEeCCCCCCc------ccccccc
Q 019384 121 DKSLKCWDPRGASGQERTLVGTYPQ-----PERVYSLSLV---GNRLVVATAGRHVNVYDLRNMSQP------EQRRESS 186 (342)
Q Consensus 121 D~~I~iWd~~~~~~~~~~~~~~~~~-----~~~v~~~s~~---~~~~~~~s~d~~v~iwd~~~~~~~------~~~~~~~ 186 (342)
|=.|.+|.++-..+ ...++...+. +.-+.+-.+. .+.++-.+..|+|++-|+|..... ....+.+
T Consensus 184 dLRINLWnlei~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred ceeeeeccccccCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 78999999874222 2222221111 0112222222 357788888899999999843210 1111111
Q ss_pred cc--------eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh-cccceeeeEEec----CC--CCceeeeeeEEEE
Q 019384 187 LK--------YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ-AKKYAFKCHRKS----EA--GRDIVYPVNAIAF 251 (342)
Q Consensus 187 ~~--------~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~-~~~~~~~~h~~~----~~--~~~~~~~v~~v~~ 251 (342)
.. ..+..+.|+.+|+++++-.- ..+++||+..... ...+ +.|... .. ..+....--.|+|
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy---ltvk~wD~nme~~pv~t~--~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY---LTVKLWDLNMEAKPVETY--PVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc---ceeEEEeccccCCcceEE--eehHhHHHHHHHHhhccchhheeEEEE
Confidence 11 12455789999998876542 3567899853332 2222 222111 00 0011111234789
Q ss_pred cCCCCeEEEecCCCeEEEEeCCC
Q 019384 252 HPIYGTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 252 sp~~~~l~sgs~Dg~I~iWd~~~ 274 (342)
+-++..++|||...-+++++...
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cCCcceEecccccceEEEecCCC
Confidence 98889999999999999999543
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=7.9e-08 Score=89.69 Aligned_cols=243 Identities=13% Similarity=0.045 Sum_probs=134.7
Q ss_pred CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe--E--EEecCCc--EEEEEeccCceeecccCCcceeEEEEeCCCCE
Q 019384 41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG--F--SASADHT--VRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ 114 (342)
Q Consensus 41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~--~--s~s~D~~--i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 114 (342)
..|.+.|..++..+........+..=.|+|+++. + +.-.++. |.+.++.+++...+..........+|+|||+.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 3566777766655444344556667789988752 2 3333443 55556766665544444445567899999988
Q ss_pred EEEeeC-----CCcEEEEcCCCCC-CcceeeeeecCCCCcEEEEeccCCeEEEEE-cCCeEEEEe--CCCCCCccccccc
Q 019384 115 VITGSW-----DKSLKCWDPRGAS-GQERTLVGTYPQPERVYSLSLVGNRLVVAT-AGRHVNVYD--LRNMSQPEQRRES 185 (342)
Q Consensus 115 l~sgs~-----D~~I~iWd~~~~~-~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s-~d~~v~iwd--~~~~~~~~~~~~~ 185 (342)
|+-.+. |-.+.+|++..+. +..............-..++++++.|+..+ .++...+|. +...........
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt- 323 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT- 323 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-
Confidence 865432 3345557765421 111122211111122346788888777665 355555554 332111111111
Q ss_pred ccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe-cC
Q 019384 186 SLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG-GC 263 (342)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg-s~ 263 (342)
..........|+|+|+.++..+. ++...|++||........ +... ...+....|+|||++|+.. ..
T Consensus 324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~---Lt~~---------~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ---LTTS---------PENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE---ccCC---------CCCccceEECCCCCEEEEEECC
Confidence 11123346779999998876643 344567788875432211 1100 0124567899999987643 32
Q ss_pred --CCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384 264 --DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG 297 (342)
Q Consensus 264 --Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg 297 (342)
...|++||+.+++.. .+....+.+...+|||-.
T Consensus 392 ~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 392 SNESELYLISLITKKTR-KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCceEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence 347888898876543 333344567788888753
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=3.9e-08 Score=92.37 Aligned_cols=205 Identities=13% Similarity=0.134 Sum_probs=120.4
Q ss_pred cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC-C--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384 82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD-K--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158 (342)
Q Consensus 82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D-~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~ 158 (342)
.+.++|.+..+.+.+..+...+.+..|+|||+.|+-.+.+ + .|.+||+.++.. ..+...........++++++.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---EEecCCCCCcCCeeECCCCCE
Confidence 3555566555555566667788899999999988765543 3 588889865432 122222222223567788887
Q ss_pred EEEE-EcCCe--EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEE
Q 019384 159 LVVA-TAGRH--VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHR 234 (342)
Q Consensus 159 ~~~~-s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~ 234 (342)
++.. ..++. |.++|+.++... ... ..........|+|+++.++..+. ++...++.+|..+... .......+
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~--~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~- 350 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALT--RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGE- 350 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeE--ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCC-
Confidence 7654 45554 777788765321 111 11122345678999998776653 4566777788753321 11111110
Q ss_pred ecCCCCceeeeeeEEEEcCCCCeEEEecC-CC--eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGC-DG--FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-Dg--~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
.....+|+|||++|+..+. ++ .|.++|..+++. ..+.... .....+|+|||++|+..+..
T Consensus 351 ----------~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~-~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 351 ----------QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR-LDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred ----------CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC-CCCCceECCCCCEEEEEEec
Confidence 1224689999998866544 44 455567776643 2233221 22356899999999877653
No 247
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.04 E-value=3.2e-07 Score=82.22 Aligned_cols=229 Identities=11% Similarity=-0.001 Sum_probs=127.2
Q ss_pred EEcCCCCeEEEEeC----------CCcEEEEECCCceeeeeeecCC--------ceEEEEEeCCCCeE-EEe--cCCcEE
Q 019384 26 RFSNHSDHLLVSSW----------DKSVRLYDASANVLRGEFMHGG--------PVLDCCFHDDSSGF-SAS--ADHTVR 84 (342)
Q Consensus 26 ~fs~~~~~l~s~s~----------Dgti~vwd~~~~~~~~~~~h~~--------~V~~~~~~~~~~~~-s~s--~D~~i~ 84 (342)
.+|||++.|..+.. +..|.|||+.+.+....+.... ......++++++.+ ..- .+..+.
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence 38999998877655 7999999999887666553221 22367778887654 333 378899
Q ss_pred EEEeccCceee-cccCCcceeEEEEeCCCCEEEEe--------eCCCcEEEEcCCCCCCcce---eeeee-----cCCCC
Q 019384 85 RLVFSHGKEDI-LGKHDAPVRCIEYSYAAGQVITG--------SWDKSLKCWDPRGASGQER---TLVGT-----YPQPE 147 (342)
Q Consensus 85 ~w~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~sg--------s~D~~I~iWd~~~~~~~~~---~~~~~-----~~~~~ 147 (342)
+.|+.+++... +.- |++..++.. +.|+......+........ ..+.. +..+
T Consensus 132 VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP- 199 (352)
T TIGR02658 132 VVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP- 199 (352)
T ss_pred EEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-
Confidence 99998877321 111 222222221 2333332222211100000 00000 0111
Q ss_pred cEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc----ccc------cceeeEEEEEeeCCceEEEEccC--------
Q 019384 148 RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR----ESS------LKYQTRCVRCYPNGTGYALSSVE-------- 209 (342)
Q Consensus 148 ~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~----~~~------~~~~~~~v~~~~~~~~~~~~s~~-------- 209 (342)
.+...++..+..+..|+|.+.|+.......... ... -+....-++++++++.+++....
T Consensus 200 ---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 200 ---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred ---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 233323344555666999999965432211100 000 01111238899999888775422
Q ss_pred CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEec-CCCeEEEEeCCCceeeecc
Q 019384 210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGG-CDGFVNVWDGNNKKRLYQY 281 (342)
Q Consensus 210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~ 281 (342)
+...++++|..+.+....... + ..+..++|+||++ .|++.. .++.|.+.|..+++.+.++
T Consensus 277 ~~~~V~ViD~~t~kvi~~i~v-G-----------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 277 ASRFLFVVDAKTGKRLRKIEL-G-----------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCEEEEEECCCCeEEEEEeC-C-----------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 224677888854432222111 1 1477899999999 776555 6889999999999888776
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=8.9e-08 Score=89.32 Aligned_cols=209 Identities=11% Similarity=0.056 Sum_probs=119.1
Q ss_pred cEEEEEeccCceeecccCCcceeEEEEeCCCCE--E-EEeeCCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC
Q 019384 82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--V-ITGSWDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG 156 (342)
Q Consensus 82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~--l-~sgs~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~ 156 (342)
.|.+.|.+..+...+......+.+=+|+|||+. + +.+..++ .|.+.++.++.. ..+...........+++++
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~---~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG---KKILALQGNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc---eEeecCCCCccceEECCCC
Confidence 455555555555545445556677799999875 2 2444444 466667765432 2233333333345688888
Q ss_pred CeEEEEEc-CC----eEEEEeCCCCC--CcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccc
Q 019384 157 NRLVVATA-GR----HVNVYDLRNMS--QPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKY 228 (342)
Q Consensus 157 ~~~~~~s~-d~----~v~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~ 228 (342)
+.|+..+. ++ .+.+||+..+. .+.. ............+|+|||+.++..+ .++...+++++....... ..
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~-lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR-LLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-PR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE-eecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-eE
Confidence 88876653 22 24447766431 1111 1111111223568999999877665 456566666665321110 11
Q ss_pred eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC---CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD---GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
.+..+. ..+...+|||||+.|+..+.+ ..|++||..+++.. .+......+....|+|||++|+..+.
T Consensus 321 ~lt~~~---------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 321 LLTKKY---------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred EeccCC---------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence 111110 134567899999988765432 37999999877643 33333445788999999998886554
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=1.7e-06 Score=77.55 Aligned_cols=250 Identities=14% Similarity=0.055 Sum_probs=134.8
Q ss_pred CcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEec----------CCcEEEEEeccCcee-ecc-c------CCc
Q 019384 41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASA----------DHTVRRLVFSHGKED-ILG-K------HDA 101 (342)
Q Consensus 41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~----------D~~i~~w~~~~~~~~-~~~-~------h~~ 101 (342)
++|.|.|..+.+.+.++.-......+ ++++++ ++.|.. +..|.+||..+.+.. .+. + ...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 89999999998877766544333444 777665 445444 678999999988742 111 1 123
Q ss_pred ceeEEEEeCCCCEEEEee-C-CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCc
Q 019384 102 PVRCIEYSYAAGQVITGS-W-DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP 179 (342)
Q Consensus 102 ~V~~~~~~~~~~~l~sgs-~-D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~ 179 (342)
.-..++++|||+.|+..- . +..+-+.|+.+..- +.....+.+..-+....+.+.+-+.|+......+......
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-----v~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-----VRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-----EEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence 345789999999887654 3 68999999875432 2211111111111122222222333443333222211110
Q ss_pred cccccc-------ccceeeEEEEEee-CCceEEEEccCCeEEEEEeechhhhhc--ccceeeeEEecCCCCceeeeeeEE
Q 019384 180 EQRRES-------SLKYQTRCVRCYP-NGTGYALSSVEGRVAMEFFDLSEASQA--KKYAFKCHRKSEAGRDIVYPVNAI 249 (342)
Q Consensus 180 ~~~~~~-------~~~~~~~~v~~~~-~~~~~~~~s~~~~~~i~~~d~~~~~~~--~~~~~~~h~~~~~~~~~~~~v~~v 249 (342)
...... .+..+. .+.+ ++..+.+... |++ ...|++..... ..+.+..-.....+.. .+...-+
T Consensus 181 ~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V--~~id~~~~~~~~~~~~~~~~~~~~~~~wr-P~g~q~i 253 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKI--FQIDLSSGDAKFLPAIEAFTEAEKADGWR-PGGWQQV 253 (352)
T ss_pred EEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeE--EEEecCCCcceecceeeeccccccccccC-CCcceeE
Confidence 000000 000011 2344 6666655555 655 45775332111 1111110000000000 1123348
Q ss_pred EEcCCCCeEEEec----------CCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC-EEEEEE
Q 019384 250 AFHPIYGTFATGG----------CDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR-LLAVAS 304 (342)
Q Consensus 250 ~~sp~~~~l~sgs----------~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~-~las~s 304 (342)
+++|+++.+.... ..+.|.++|..+++.+..+.- ...++.++|||||+ +|.+..
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence 9999999887743 224799999999998877652 34789999999999 766655
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=1.1e-07 Score=89.30 Aligned_cols=197 Identities=15% Similarity=0.096 Sum_probs=123.1
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE--EEecCC--cEEEEEec
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWD---KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF--SASADH--TVRRLVFS 89 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~D---gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~--s~s~D~--~i~~w~~~ 89 (342)
.+...+.+.+|||||++|+..+.+ ..|.+||+.++.........+.+....|+|++..+ +.+.++ .|.++++.
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 445678999999999999877654 36888999877654443344556678899877643 444455 46777888
Q ss_pred cCceeecccCCcceeEEEEeCCCCEEEEeeC-CC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-
Q 019384 90 HGKEDILGKHDAPVRCIEYSYAAGQVITGSW-DK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG- 165 (342)
Q Consensus 90 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~-D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d- 165 (342)
++....+..+........|+||++.|+..+. ++ .|.++|+.++.. .. +...........++.+++.++..+..
T Consensus 276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~--~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA--ER-VTFVGNYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE--EE-eecCCCCccceEECCCCCEEEEEEccC
Confidence 7776556666666777899999988765543 33 466677654332 11 11111112234577788887766543
Q ss_pred C--eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeech
Q 019384 166 R--HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLS 220 (342)
Q Consensus 166 ~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~ 220 (342)
+ .|.++|+.++..... ... . ......++|+|+.++..+. ++...+++++..
T Consensus 353 ~~~~l~~~dl~tg~~~~l--t~~-~-~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 353 GNFHVAAQDLQRGSVRIL--TDT-S-LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CceEEEEEECCCCCEEEc--cCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2 478889877532111 111 1 1124578999998876654 344556666663
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=4.2e-08 Score=85.55 Aligned_cols=233 Identities=15% Similarity=0.138 Sum_probs=148.7
Q ss_pred cCCceEEEEEeCCC--CeEEEe-cCCcEEEEEeccCcee-------ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEc
Q 019384 59 HGGPVLDCCFHDDS--SGFSAS-ADHTVRRLVFSHGKED-------ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128 (342)
Q Consensus 59 h~~~V~~~~~~~~~--~~~s~s-~D~~i~~w~~~~~~~~-------~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd 128 (342)
-...|..++|..++ .++.+. .|..+...++...... ....-+.+|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 34567788886443 344444 7777776666544311 223345667666553 45788889999999998
Q ss_pred CCCCCC--cceeeeeecCCCCcEEEEeccCCeEEEEEcC--CeEEEEeCCCCCCccc-------ccccccceeeEEEEEe
Q 019384 129 PRGASG--QERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQ-------RRESSLKYQTRCVRCY 197 (342)
Q Consensus 129 ~~~~~~--~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d--~~v~iwd~~~~~~~~~-------~~~~~~~~~~~~v~~~ 197 (342)
.+.+.. .....+........+-.....++.+++|+.. ..+++||+....+..+ .....++..++.+.|.
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 763321 1111122111111111122234566667777 6799999976532211 1111223345566777
Q ss_pred eC--CceEEEEccCCeEEEEEeechhhhh-cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384 198 PN--GTGYALSSVEGRVAMEFFDLSEASQ-AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 198 ~~--~~~~~~~s~~~~~~i~~~d~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~ 274 (342)
+. ...+++++.-+.+ ++||.+.... ...+.+. .++++++...|.++++.+|..-|.+..+|.+.
T Consensus 212 ~g~~~~~fat~T~~hqv--R~YDt~~qRRPV~~fd~~-----------E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQV--RLYDTRHQRRPVAQFDFL-----------ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG 278 (412)
T ss_pred CCCCCceEEEEecceeE--EEecCcccCcceeEeccc-----------cCcceeeeecCCCcEEEEecccchhheecccC
Confidence 76 6778888877765 5699863211 1112111 24799999999999999999999999999999
Q ss_pred ceeeec-cCCCCcceEEEEECCCCCEEEEEEec
Q 019384 275 KKRLYQ-YSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 275 ~~~~~~-~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
++.+.. +.+..+.|.++...|.+++||+++-+
T Consensus 279 ~kl~g~~~kg~tGsirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 279 GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred ceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence 887754 88999999999999999999999864
No 252
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=3.6e-07 Score=83.23 Aligned_cols=267 Identities=15% Similarity=0.201 Sum_probs=151.9
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCC-----------CcEEEEECCCceeeeeeec---CCceE-EEEEeCCCCeEEEecCC
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWD-----------KSVRLYDASANVLRGEFMH---GGPVL-DCCFHDDSSGFSASADH 81 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~D-----------gti~vwd~~~~~~~~~~~h---~~~V~-~~~~~~~~~~~s~s~D~ 81 (342)
...-+|..+.|||..++|+|=|.. ..++|||+.+|.+...+.. ...++ -..|+.++..++.-.-.
T Consensus 247 F~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~ 326 (698)
T KOG2314|consen 247 FYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN 326 (698)
T ss_pred ccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc
Confidence 334689999999999999985532 6789999999876544322 22232 45678677666555557
Q ss_pred cEEEEEeccCceeeccc---CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCc--------E-
Q 019384 82 TVRRLVFSHGKEDILGK---HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER--------V- 149 (342)
Q Consensus 82 ~i~~w~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~--------v- 149 (342)
+|.+++...-. ++.+ --..|....|+|.+.. |..|-.++.....+..+........ |
T Consensus 327 sisIyEtpsf~--lld~Kslki~gIr~FswsP~~~l---------lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVs 395 (698)
T KOG2314|consen 327 SISIYETPSFM--LLDKKSLKISGIRDFSWSPTSNL---------LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVS 395 (698)
T ss_pred eEEEEecCcee--eecccccCCccccCcccCCCcce---------EEEEcccccCCcceEEEEecCccceeeeccceeee
Confidence 77788755421 2221 1245788889996544 3455444322211111111111000 1
Q ss_pred -EEEec--cCCeEEEEE----------cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEE
Q 019384 150 -YSLSL--VGNRLVVAT----------AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAME 215 (342)
Q Consensus 150 -~~~s~--~~~~~~~~s----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~ 215 (342)
+.+-+ +|+++..-. .=..+.|+.++....+.... .++..+..++|-|.|..+++.+ ......+.
T Consensus 396 DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--elke~vi~FaWEP~gdkF~vi~g~~~k~tvs 473 (698)
T KOG2314|consen 396 DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--ELKESVIAFAWEPHGDKFAVISGNTVKNTVS 473 (698)
T ss_pred ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--ecchheeeeeeccCCCeEEEEEcccccccee
Confidence 11111 334332111 01135667776654443332 3445567788999998887664 44455667
Q ss_pred EeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe---cCCCeEEEEeCCCceee-eccCCCCcceEEE
Q 019384 216 FFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG---GCDGFVNVWDGNNKKRL-YQYSKYPTSIAAL 291 (342)
Q Consensus 216 ~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg---s~Dg~I~iWd~~~~~~~-~~~~~~~~~V~~v 291 (342)
+|-................ ...+.+.|+|.|++++.+ |..|.+..+|.....+. .....|. .-+.+
T Consensus 474 fY~~e~~~~~~~lVk~~dk---------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~v 543 (698)
T KOG2314|consen 474 FYAVETNIKKPSLVKELDK---------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEV 543 (698)
T ss_pred EEEeecCCCchhhhhhhcc---------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccc
Confidence 7776531111111000000 136789999999998775 45789999998742221 1223343 34789
Q ss_pred EECCCCCEEEEEEec
Q 019384 292 SFSRDGRLLAVASSY 306 (342)
Q Consensus 292 ~~spdg~~las~s~~ 306 (342)
.|.|.|+|++++|+.
T Consensus 544 eWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSS 558 (698)
T ss_pred eECCCCCEEEEeeeh
Confidence 999999999999874
No 253
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.1e-07 Score=89.01 Aligned_cols=274 Identities=12% Similarity=0.155 Sum_probs=169.3
Q ss_pred ccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc----ee------------eeeeecCCceEEEEEeCCCCeE
Q 019384 12 RELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VL------------RGEFMHGGPVLDCCFHDDSSGF 75 (342)
Q Consensus 12 ~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~----~~------------~~~~~h~~~V~~~~~~~~~~~~ 75 (342)
++++-+-.....+++|+.+..++|.|+.||.++|-.+.+. .. .+.-+|++.|.-+.|....+.+
T Consensus 7 kki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 7 KKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred cccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 4455555667899999999999999999999999997532 11 1223699999999998766666
Q ss_pred EE-ecCCcEEEEEeccCc--eeeccc-CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee-ecCC-CCcE
Q 019384 76 SA-SADHTVRRLVFSHGK--EDILGK-HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG-TYPQ-PERV 149 (342)
Q Consensus 76 s~-s~D~~i~~w~~~~~~--~~~~~~-h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~-~~~v 149 (342)
+. -.+|.|.+|.+-.+. +.++.. -.+.|.++.|+.||+.|+....||.|.+=.++... +++ ..+. ...-
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-----IwgKeLkg~~l~h 161 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-----IWGKELKGQLLAH 161 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-----ecchhcchheccc
Confidence 54 468899999988776 334433 34668899999999999888888877654433211 000 0000 0111
Q ss_pred EEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc--c-------cccceeeEEEE--------EeeCCceEEEEccCCeE
Q 019384 150 YSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR--E-------SSLKYQTRCVR--------CYPNGTGYALSSVEGRV 212 (342)
Q Consensus 150 ~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~--~-------~~~~~~~~~v~--------~~~~~~~~~~~s~~~~~ 212 (342)
+.++.+.+.++.+-+.|.+.++|....-...... + ...+..+..+. .-|+...++++-.+|.+
T Consensus 162 v~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~ 241 (1189)
T KOG2041|consen 162 VLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM 241 (1189)
T ss_pred eeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence 2345455566667777889999975421100000 0 00011111222 22566667777777765
Q ss_pred EEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC---------eEEEEeCCCceeeeccCC
Q 019384 213 AMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG---------FVNVWDGNNKKRLYQYSK 283 (342)
Q Consensus 213 ~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg---------~I~iWd~~~~~~~~~~~~ 283 (342)
.| .--..+..+-. .+....+..+.|+++|..||.++.|. .|..|..- |+.+.+++-
T Consensus 242 Qi--MR~eND~~Pvv------------~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkv 306 (1189)
T KOG2041|consen 242 QI--MRSENDPEPVV------------VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKV 306 (1189)
T ss_pred hh--hhhcCCCCCeE------------EecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEec
Confidence 43 11100000000 01112466789999999999988543 45555433 456667776
Q ss_pred CCcceEEEEECCCCCEEEEEEe
Q 019384 284 YPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 284 ~~~~V~~v~~spdg~~las~s~ 305 (342)
....|++++|--.|-.+|.+-.
T Consensus 307 pg~~It~lsWEg~gLriA~Avd 328 (1189)
T KOG2041|consen 307 PGSCITGLSWEGTGLRIAIAVD 328 (1189)
T ss_pred CCceeeeeEEcCCceEEEEEec
Confidence 6778999999888887776653
No 254
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.94 E-value=3e-07 Score=76.74 Aligned_cols=200 Identities=16% Similarity=0.058 Sum_probs=123.1
Q ss_pred EEEEcC-----CCCeEEEEeCCCcEEEEECCCcee--eeeeecCCceEEEEE-e-CCCCeEEEecCCcEEEEEeccCcee
Q 019384 24 NLRFSN-----HSDHLLVSSWDKSVRLYDASANVL--RGEFMHGGPVLDCCF-H-DDSSGFSASADHTVRRLVFSHGKED 94 (342)
Q Consensus 24 ~l~fs~-----~~~~l~s~s~Dgti~vwd~~~~~~--~~~~~h~~~V~~~~~-~-~~~~~~s~s~D~~i~~w~~~~~~~~ 94 (342)
.+.|-| ...+||.|+.-|...+|...+... ..--.|...|.-+.= . ....++.++.|.++++++++.+..+
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 356665 346899999999999999875432 111234443322111 1 1224678999999999998765432
Q ss_pred ecccCCcc--eeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384 95 ILGKHDAP--VRCIEYSYAAGQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVY 171 (342)
Q Consensus 95 ~~~~h~~~--V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw 171 (342)
...|... +.++++++|++.+++.+....|-.|.+..... .............-..+++.....++++++||++.||
T Consensus 152 -~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 152 -FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred -ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence 2234443 78999999999999999989999997754322 1111122222223334455556689999999999999
Q ss_pred eCCCCCCcc---cccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh
Q 019384 172 DLRNMSQPE---QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ 224 (342)
Q Consensus 172 d~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~ 224 (342)
|+|....+- .....+.++.+..+.|++.|..=+.--.++.-.+.+.|++....
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 999875542 22223455667777788765431111222333456688765433
No 255
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.87 E-value=1.8e-07 Score=78.92 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=109.4
Q ss_pred CCCeEEEEEcC---CCC-eEEEEeCCCcEEEEECCCcee----eeeeecCCc---eEEEEEeCCCC-eEEEecCCcEEEE
Q 019384 19 SDGISNLRFSN---HSD-HLLVSSWDKSVRLYDASANVL----RGEFMHGGP---VLDCCFHDDSS-GFSASADHTVRRL 86 (342)
Q Consensus 19 ~~~V~~l~fs~---~~~-~l~s~s~Dgti~vwd~~~~~~----~~~~~h~~~---V~~~~~~~~~~-~~s~s~D~~i~~w 86 (342)
...++.+.|.. +|. .|+-+-.+|.|.++....... +......-. -.++.|++.+. +++.-.+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34455566653 445 566677889999998764321 111111111 23455665444 4555566666533
Q ss_pred EeccCc---eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeee-ecCCCCcEEEEecc---CCe
Q 019384 87 VFSHGK---EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVG-TYPQPERVYSLSLV---GNR 158 (342)
Q Consensus 87 ~~~~~~---~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~v~~~s~~---~~~ 158 (342)
+..... ...+..|.-..+.+.|+... +.++||+.|+.+.-||+|.... ..+. ...+...|+++..+ +..
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---~i~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---FIWHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---eeeecceeeecceEEEecCCCCCce
Confidence 322222 22567899999999998644 6889999999999999984322 1121 11234456666554 458
Q ss_pred EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCc
Q 019384 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT 201 (342)
Q Consensus 159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 201 (342)
+++|++|..|++||.|+...+.- ..++.+-+..+..+|...
T Consensus 226 I~TGsYDe~i~~~DtRnm~kPl~--~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 226 IATGSYDECIRVLDTRNMGKPLF--KAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred EEEeccccceeeeehhcccCccc--cCccccceEEEEecchhh
Confidence 99999999999999998655532 223345566777777543
No 256
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.87 E-value=5.2e-06 Score=85.48 Aligned_cols=242 Identities=12% Similarity=0.092 Sum_probs=130.8
Q ss_pred EEEEEcCC-CCeEEEEeCCCcEEEEECCCceeeeeee--cC------------CceEEEEEeCCC-CeEEEe-cCCcEEE
Q 019384 23 SNLRFSNH-SDHLLVSSWDKSVRLYDASANVLRGEFM--HG------------GPVLDCCFHDDS-SGFSAS-ADHTVRR 85 (342)
Q Consensus 23 ~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~~~~~~~--h~------------~~V~~~~~~~~~-~~~s~s-~D~~i~~ 85 (342)
..+++++. ++.+++-+..+.|++||..+........ .. ....++++.+++ .++.+- ..+.|+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 46788875 6677777888999999987543322111 11 124678887554 455543 4567888
Q ss_pred EEeccCceeecccC-----------------CcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeee-----
Q 019384 86 LVFSHGKEDILGKH-----------------DAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGT----- 142 (342)
Q Consensus 86 w~~~~~~~~~~~~h-----------------~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~----- 142 (342)
+++.++...++.+- -..-+.++++|+ +..+++.+.++.|++||..++.. ......
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYERN 728 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCcccc
Confidence 88877654433210 012357899994 55567778889999999764321 000000
Q ss_pred ----------cCCCCcEEEEeccCCeEE-EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC--
Q 019384 143 ----------YPQPERVYSLSLVGNRLV-VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE-- 209 (342)
Q Consensus 143 ----------~~~~~~v~~~s~~~~~~~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-- 209 (342)
... ..-+.++.+++.++ +-+.++.|++||+.++... ++.+...
T Consensus 729 ~~g~~~~~~~~~~-P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-----------------------~~~gg~~~~ 784 (1057)
T PLN02919 729 LNGSSGTSTSFAQ-PSGISLSPDLKELYIADSESSSIRALDLKTGGSR-----------------------LLAGGDPTF 784 (1057)
T ss_pred CCCCccccccccC-ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-----------------------EEEeccccc
Confidence 000 01123344444333 3344456666766543100 0000000
Q ss_pred CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeecc--------
Q 019384 210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY-------- 281 (342)
Q Consensus 210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~-------- 281 (342)
......+.+...... . ........++++++|..+++-+.+++|++||..++......
T Consensus 785 ~~~l~~fG~~dG~g~--~-------------~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~ 849 (1057)
T PLN02919 785 SDNLFKFGDHDGVGS--E-------------VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK 849 (1057)
T ss_pred CcccccccCCCCchh--h-------------hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC
Confidence 000000000000000 0 00001347899999999999999999999999876543211
Q ss_pred -----CCCCcceEEEEECCCCCEEEEEEe
Q 019384 282 -----SKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 282 -----~~~~~~V~~v~~spdg~~las~s~ 305 (342)
.........|++++||+++++-+.
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CCcccccccCCceEEEEeCCCCEEEEECC
Confidence 112235689999999997765443
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.85 E-value=2.5e-07 Score=79.62 Aligned_cols=155 Identities=18% Similarity=0.292 Sum_probs=106.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-----eeeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccC-
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-----VLRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHG- 91 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-----~~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~- 91 (342)
...++++.+.++..+|..|-..|++.=+-++.. .++....|...|.++.|+ +...+++++-|.-+.-.-.+.+
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 357889999999999999999999988887532 234445788899888887 4445567776654421111100
Q ss_pred ----------------------------c-------------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384 92 ----------------------------K-------------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 92 ----------------------------~-------------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~ 130 (342)
. ...+.+|.+.+.+++|.+...+|.+|+.|..+.+||+.
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 0 01245799999999999988999999999999999986
Q ss_pred CCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCC
Q 019384 131 GASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNM 176 (342)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~ 176 (342)
...+.. .....+...+-.++.- -..+.++..|+.|.+||+...
T Consensus 228 g~~g~~---~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 228 GRKGTA---YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred CCccee---eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 433321 1111222333334332 347889999999999998754
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.85 E-value=1.4e-06 Score=80.30 Aligned_cols=254 Identities=15% Similarity=0.075 Sum_probs=139.4
Q ss_pred CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcce------
Q 019384 30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPV------ 103 (342)
Q Consensus 30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V------ 103 (342)
++..++.++.|+.+..+|..+++++......+.+.+.....++.++.++.++.+..+|..+++..-........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 45677888899999999998887665544444443322224566777888999999998877643111111111
Q ss_pred eEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC---c---E-EEEeccCCeEEEEEcCCeEEEEeCCCC
Q 019384 104 RCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE---R---V-YSLSLVGNRLVVATAGRHVNVYDLRNM 176 (342)
Q Consensus 104 ~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~---~---v-~~~s~~~~~~~~~s~d~~v~iwd~~~~ 176 (342)
.+.... ++.++.++.++.+..+|++++............... . + ......++.+++++.++.+..||..++
T Consensus 184 ~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 184 ASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 011111 346778888899999998765421111010000000 0 0 011123567888888999999999877
Q ss_pred CCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC
Q 019384 177 SQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG 256 (342)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~ 256 (342)
+..-... ... ... ....+..+++++.++.+ ..+|..+... .|.... .. . . ...+... .+.
T Consensus 262 ~~~W~~~---~~~-~~~--p~~~~~~vyv~~~~G~l--~~~d~~tG~~--~W~~~~---~~-~-~---~~ssp~i--~g~ 321 (377)
T TIGR03300 262 RVLWKRD---ASS-YQG--PAVDDNRLYVTDADGVV--VALDRRSGSE--LWKNDE---LK-Y-R---QLTAPAV--VGG 321 (377)
T ss_pred cEEEeec---cCC-ccC--ceEeCCEEEEECCCCeE--EEEECCCCcE--EEcccc---cc-C-C---ccccCEE--ECC
Confidence 4322111 100 011 11234556667767754 4577643322 121110 00 0 0 0111111 367
Q ss_pred eEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 257 TFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 257 ~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
.|++++.||.|+++|.++++.+.+++.+...+..--...+++++ .++.+
T Consensus 322 ~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~-v~~~d 370 (377)
T TIGR03300 322 YLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLL-VQTRD 370 (377)
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEE-EEeCC
Confidence 88899999999999999999888776555443333233445543 44433
No 259
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=6.8e-08 Score=88.15 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=114.8
Q ss_pred cCCCCCCCccCCCC--CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-------ecCC-----ceEEEEEe
Q 019384 4 VHPPPTSGRELGNP--PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-------MHGG-----PVLDCCFH 69 (342)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-------~h~~-----~V~~~~~~ 69 (342)
|--|..+|+.|... .+.+++++..++.-.+|+.|..||+|..||.........+ .|.+ .|+++.|.
T Consensus 158 YRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~ 237 (703)
T KOG2321|consen 158 YRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR 237 (703)
T ss_pred EEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec
Confidence 34467889999843 3579999999998889999999999999998654322221 2333 39999999
Q ss_pred CCCC-eEEEecCCcEEEEEeccCceeecccCC--cceeEEEEeCCC--CEEEEeeCCCcEEEEcCCCCCCcceeeeeecC
Q 019384 70 DDSS-GFSASADHTVRRLVFSHGKEDILGKHD--APVRCIEYSYAA--GQVITGSWDKSLKCWDPRGASGQERTLVGTYP 144 (342)
Q Consensus 70 ~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~h~--~~V~~~~~~~~~--~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~ 144 (342)
+++. +..|+.+|.+.++|+.+........|. -+|..++|.+.+ ..++|. ....++|||..++.. +...+
T Consensus 238 d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~-----~asiE 311 (703)
T KOG2321|consen 238 DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP-----MASIE 311 (703)
T ss_pred CCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc-----eeecc
Confidence 7664 457889999999999998877777776 468899997753 345543 335789999765443 12222
Q ss_pred CCCcEEEEe--ccCCeEEEEEcCCeEEEEeCC
Q 019384 145 QPERVYSLS--LVGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 145 ~~~~v~~~s--~~~~~~~~~s~d~~v~iwd~~ 174 (342)
....+..++ ++...+++|-.+..+..|=+.
T Consensus 312 pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 312 PTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 222233344 445577788777777766554
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.83 E-value=2.6e-05 Score=70.85 Aligned_cols=250 Identities=16% Similarity=0.153 Sum_probs=138.9
Q ss_pred CCeEEEEEcCCCCeEEEEeC----CCcEEEEECCC--cee--eeeee-cCCceEEEEEeCCCCe-EEEe-cCCcEEEEEe
Q 019384 20 DGISNLRFSNHSDHLLVSSW----DKSVRLYDASA--NVL--RGEFM-HGGPVLDCCFHDDSSG-FSAS-ADHTVRRLVF 88 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~s~----Dgti~vwd~~~--~~~--~~~~~-h~~~V~~~~~~~~~~~-~s~s-~D~~i~~w~~ 88 (342)
.....|+++|++++|.+... ++.|..|++.. +.+ +.... .......+++.+++.. +++. .++.+.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 44567889999999988766 57999999865 333 22222 3344456778777665 4554 4889999998
Q ss_pred ccC-cee----ec----------ccCCcceeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCccee--eeeecC-CCCcE
Q 019384 89 SHG-KED----IL----------GKHDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERT--LVGTYP-QPERV 149 (342)
Q Consensus 89 ~~~-~~~----~~----------~~h~~~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~--~~~~~~-~~~~v 149 (342)
... ... .+ .+-.....++.++|++++++... ....|.+|++......... .+.... ...+-
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 763 211 11 11234477999999999876643 3347999988654421111 111111 12234
Q ss_pred EEEeccCCeEEE-EEcCCeEEEEeCCCCCCc--cccccc----ccc--eeeEEEEEeeCCceEEEEccCCeEEEEEeech
Q 019384 150 YSLSLVGNRLVV-ATAGRHVNVYDLRNMSQP--EQRRES----SLK--YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLS 220 (342)
Q Consensus 150 ~~~s~~~~~~~~-~s~d~~v~iwd~~~~~~~--~~~~~~----~~~--~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~ 220 (342)
..|+.+++.+.+ .-.+++|.++++....-. ...... ... .....+.++|+++.+.++....+ .|.+|++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~-sI~vf~~d 275 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN-SISVFDLD 275 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT-EEEEEEEC
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC-EEEEEEEe
Confidence 556666666544 455678999988722111 000000 011 13567889999998877654332 33457763
Q ss_pred hhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec-CCCeEEEEeC--CCcee
Q 019384 221 EASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG-CDGFVNVWDG--NNKKR 277 (342)
Q Consensus 221 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iWd~--~~~~~ 277 (342)
....... ....... .+. ..+.++++|+|++|+++. .++.|.+|++ +++.+
T Consensus 276 ~~~g~l~--~~~~~~~-~G~----~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 276 PATGTLT--LVQTVPT-GGK----FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp TTTTTEE--EEEEEEE-SSS----SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred cCCCceE--EEEEEeC-CCC----CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 2211111 1111111 010 256799999999987665 6679999976 45554
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=5e-08 Score=83.86 Aligned_cols=200 Identities=13% Similarity=0.275 Sum_probs=119.1
Q ss_pred CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC-Cc--ceeeeeecC----------CCCcEEEEec----cCCeEEEE
Q 019384 100 DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS-GQ--ERTLVGTYP----------QPERVYSLSL----VGNRLVVA 162 (342)
Q Consensus 100 ~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~-~~--~~~~~~~~~----------~~~~v~~~s~----~~~~~~~~ 162 (342)
.+.|.++.|...|.+|+||..+|.+-++.-.... .+ ....++.+. ...++..+-+ ....++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568899999999999999999999999643211 11 111111111 1122333333 23478889
Q ss_pred EcCCeEEEEeCCCCCC----------------------------------cccccccccceeeEEEEEeeCCceEEEEcc
Q 019384 163 TAGRHVNVYDLRNMSQ----------------------------------PEQRRESSLKYQTRCVRCYPNGTGYALSSV 208 (342)
Q Consensus 163 s~d~~v~iwd~~~~~~----------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 208 (342)
+.|++|++|.++.... +.+.....+.++++++++..|...+++ +.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-AD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-AD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-cc
Confidence 9999999998764211 011223345677888888888776654 34
Q ss_pred CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC-CCeEEEecCCCeEEEEeCCCce------eeec-
Q 019384 209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI-YGTFATGGCDGFVNVWDGNNKK------RLYQ- 280 (342)
Q Consensus 209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~-~~~l~sgs~Dg~I~iWd~~~~~------~~~~- 280 (342)
|- +|.+|++.-.. +.+.+..=.. ..-.+....|++..|||. ..+++-.+..|+|++-|++... .+..
T Consensus 184 dL--RINLWnlei~d--~sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 184 DL--RINLWNLEIID--QSFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred ce--eeeeccccccC--CceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 44 44567764221 1121111000 000122335788899997 4567888899999999987311 1111
Q ss_pred ---------cCCCCcceEEEEECCCCCEEEEEEe
Q 019384 281 ---------YSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 281 ---------~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
+.+--+.|.++.||++|+|+++=+.
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRDy 292 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY 292 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEecc
Confidence 1122357899999999999998664
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=7.2e-05 Score=65.33 Aligned_cols=262 Identities=13% Similarity=0.111 Sum_probs=151.0
Q ss_pred CCcEEEEECCC--ce--eeeeeecCCceEEEEEeCCCC-eEEEec---CCcEEEEEecc--Cceeecc---cCCcceeEE
Q 019384 40 DKSVRLYDASA--NV--LRGEFMHGGPVLDCCFHDDSS-GFSASA---DHTVRRLVFSH--GKEDILG---KHDAPVRCI 106 (342)
Q Consensus 40 Dgti~vwd~~~--~~--~~~~~~h~~~V~~~~~~~~~~-~~s~s~---D~~i~~w~~~~--~~~~~~~---~h~~~V~~~ 106 (342)
++-|.+|++.+ ++ ...+..+.+.++-++|.++++ ++++-. ++.+..+.++. ++...+. .-..+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999863 22 333445777888899987764 556544 46677777665 3322221 112233778
Q ss_pred EEeCCCCEEEEeeCC-CcEEEEcCCCCCCcceeeeeecCCC------------CcEEEEeccCCeEEEEEcC-CeEEEEe
Q 019384 107 EYSYAAGQVITGSWD-KSLKCWDPRGASGQERTLVGTYPQP------------ERVYSLSLVGNRLVVATAG-RHVNVYD 172 (342)
Q Consensus 107 ~~~~~~~~l~sgs~D-~~I~iWd~~~~~~~~~~~~~~~~~~------------~~v~~~s~~~~~~~~~s~d-~~v~iwd 172 (342)
++++++++++++... +.|.++-++.. +......+...+. .-...+.++++.+++..-+ .+|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 899999998887665 68999987642 2111111111110 1123466666666665433 4699999
Q ss_pred CCCCCCcccc-cccccceeeEEEEEeeCCceEE-EEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384 173 LRNMSQPEQR-RESSLKYQTRCVRCYPNGTGYA-LSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA 250 (342)
Q Consensus 173 ~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 250 (342)
+..+...... .......-..-+.|+|+++... +...+++|.++-+|..... .-.++.+........-.....+|.
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK---FEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce---EEEeeeeccCccccCCCCceeEEE
Confidence 9865432111 1111223356688999999764 4457787776555543111 111222222111111122467789
Q ss_pred EcCCCCeEEEec-CCCeEEEEeCCC--cee--eeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 251 FHPIYGTFATGG-CDGFVNVWDGNN--KKR--LYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 251 ~sp~~~~l~sgs-~Dg~I~iWd~~~--~~~--~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
.+|||++|..+- -...|-++.+.. +++ +.....+...-....|+|+|++|+++..
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 999999987653 223788887653 332 2223334334589999999999998764
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=2e-07 Score=81.77 Aligned_cols=156 Identities=16% Similarity=0.105 Sum_probs=101.8
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEECCCc----eeeeeeecCCceEEEEEe-CCCCeE---EEecCCcEEEEEeccCc
Q 019384 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VLRGEFMHGGPVLDCCFH-DDSSGF---SASADHTVRRLVFSHGK 92 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~----~~~~~~~h~~~V~~~~~~-~~~~~~---s~s~D~~i~~w~~~~~~ 92 (342)
.+..+..++.+++||.+-.++...+++.... +++...--...-+++.|. .+...+ .++....+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 4456667788888888877777767776432 222222222333455554 333333 33444455566555555
Q ss_pred eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC-eEEEEEcCCeEEEE
Q 019384 93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN-RLVVATAGRHVNVY 171 (342)
Q Consensus 93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~-~~~~~s~d~~v~iw 171 (342)
.+.+-+|-..++.++++||++.|+|+.-|..||+-......-....++ .|..-|-.++...+ .++++++|+++++|
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl---GH~eFVS~isl~~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL---GHKEFVSTISLTDNYLLLSGSGDKTLRLW 220 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc---ccHhheeeeeeccCceeeecCCCCcEEEE
Confidence 667789999999999999999999999999999865432111111111 24444556666444 57999999999999
Q ss_pred eCCCCCCc
Q 019384 172 DLRNMSQP 179 (342)
Q Consensus 172 d~~~~~~~ 179 (342)
|+++++.+
T Consensus 221 d~~sgk~L 228 (390)
T KOG3914|consen 221 DITSGKLL 228 (390)
T ss_pred ecccCCcc
Confidence 99998764
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=1.4e-05 Score=69.68 Aligned_cols=216 Identities=16% Similarity=0.151 Sum_probs=128.9
Q ss_pred CCcEEEEEeccCce----eecccCCcceeEEEEeCCCCEEEEeeCC---CcEEEEcCCCCCCcceeeeee---cCCCCcE
Q 019384 80 DHTVRRLVFSHGKE----DILGKHDAPVRCIEYSYAAGQVITGSWD---KSLKCWDPRGASGQERTLVGT---YPQPERV 149 (342)
Q Consensus 80 D~~i~~w~~~~~~~----~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~~I~iWd~~~~~~~~~~~~~~---~~~~~~v 149 (342)
++-|..|++.+... ..+..+....+-++|+|+++.|+++-.+ +.|..|.++...+.. ..+.. ...+.+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeE
Confidence 45688898875432 2234566788899999999999887554 677776654322211 11211 1122245
Q ss_pred EEEeccCCeEEEEEcC-CeEEEEeCCCCCCcc---ccccccc--------ceeeEEEEEeeCCceEEEEccCCeEEEEEe
Q 019384 150 YSLSLVGNRLVVATAG-RHVNVYDLRNMSQPE---QRRESSL--------KYQTRCVRCYPNGTGYALSSVEGRVAMEFF 217 (342)
Q Consensus 150 ~~~s~~~~~~~~~s~d-~~v~iwd~~~~~~~~---~~~~~~~--------~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~ 217 (342)
++++.++..++++.+. +.|.++-++..-... +...+.. ..+.-+..+.|+++.+++.....+ ++.+|
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y 172 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLY 172 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEE
Confidence 5677777777777665 679998886521110 1000000 011334567899998888776554 56778
Q ss_pred echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE-EEecCCCeEEEEeCCCc----eeeeccC----CC--Cc
Q 019384 218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF-ATGGCDGFVNVWDGNNK----KRLYQYS----KY--PT 286 (342)
Q Consensus 218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l-~sgs~Dg~I~iWd~~~~----~~~~~~~----~~--~~ 286 (342)
++.+........ ..-+ .+. .-+-|+|||++++. +.+=.+++|-+|..++. +.++.+. .. ..
T Consensus 173 ~~~dg~L~~~~~--~~v~--~G~----GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 173 DLDDGKLTPADP--AEVK--PGA----GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred EcccCccccccc--cccC--CCC----CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 886432221111 1111 111 24568999999975 55667999999998763 2233221 12 34
Q ss_pred ceEEEEECCCCCEEEEEEe
Q 019384 287 SIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 287 ~V~~v~~spdg~~las~s~ 305 (342)
...++..+|||++|-++-.
T Consensus 245 ~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 245 WAAAIHISPDGRFLYASNR 263 (346)
T ss_pred ceeEEEECCCCCEEEEecC
Confidence 6788999999999987654
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=5.2e-07 Score=76.79 Aligned_cols=244 Identities=18% Similarity=0.269 Sum_probs=146.2
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-----eeeee-eecC------------CceEEEEEeCCC---CeEE
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-----VLRGE-FMHG------------GPVLDCCFHDDS---SGFS 76 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-----~~~~~-~~h~------------~~V~~~~~~~~~---~~~s 76 (342)
..+-|++|-|...|.+|++|...|+|-+|.-... +..++ .+|. ..|..+.|..+. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3578999999999999999988899999986432 12222 2332 357888887443 3567
Q ss_pred EecCCcEEEEEeccCcee-------------------------------------------ec-ccCCcceeEEEEeCCC
Q 019384 77 ASADHTVRRLVFSHGKED-------------------------------------------IL-GKHDAPVRCIEYSYAA 112 (342)
Q Consensus 77 ~s~D~~i~~w~~~~~~~~-------------------------------------------~~-~~h~~~V~~~~~~~~~ 112 (342)
.+.|.+|++|-+..+... .. ..|.--|+++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 889999999987544100 00 1355668889998877
Q ss_pred CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC-----CcEEEEeccC---CeEEEEEcCCeEEEEeCCCCCCcccccc
Q 019384 113 GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP-----ERVYSLSLVG---NRLVVATAGRHVNVYDLRNMSQPEQRRE 184 (342)
Q Consensus 113 ~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~-----~~v~~~s~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~ 184 (342)
+.++| +.|=.|.+|+++...+. ..++...++. .-+.+-.+.+ +.+...+..|+|++-|+|.......
T Consensus 185 et~lS-aDdLrINLWnl~i~D~s-FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn--- 259 (460)
T COG5170 185 ETLLS-ADDLRINLWNLEIIDGS-FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN--- 259 (460)
T ss_pred heeee-ccceeeeeccccccCCc-eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC---
Confidence 66665 56789999998743331 1222211110 0111222222 3566677778899999875321000
Q ss_pred cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC
Q 019384 185 SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD 264 (342)
Q Consensus 185 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D 264 (342)
+ . ..+. -..|+. ..-++. .....|+.+.|+++|+++++-+.
T Consensus 260 -~-----~--------klfe-~~~D~v-~~~ff~----------------------eivsSISD~kFs~ngryIlsRdy- 300 (460)
T COG5170 260 -S-----K--------KLFE-LTIDGV-DVDFFE----------------------EIVSSISDFKFSDNGRYILSRDY- 300 (460)
T ss_pred -c-----h--------hhhh-hccCcc-cchhHH----------------------HHhhhhcceEEcCCCcEEEEecc-
Confidence 0 0 0000 000000 000000 11125788999999999988765
Q ss_pred CeEEEEeCCC-ceeeeccCCC------------Ccce---EEEEECCCCCEEEEEEe
Q 019384 265 GFVNVWDGNN-KKRLYQYSKY------------PTSI---AALSFSRDGRLLAVASS 305 (342)
Q Consensus 265 g~I~iWd~~~-~~~~~~~~~~------------~~~V---~~v~~spdg~~las~s~ 305 (342)
-+|+|||++. ..++.+...| ...| ..+.||-|.+.+.+||.
T Consensus 301 ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 301 LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence 4899999874 3345544322 1222 56899999999999986
No 266
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.66 E-value=2.9e-07 Score=86.51 Aligned_cols=272 Identities=15% Similarity=0.206 Sum_probs=159.4
Q ss_pred CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCc--eEEEEEeC---CCCeEEEecCC
Q 019384 8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGP--VLDCCFHD---DSSGFSASADH 81 (342)
Q Consensus 8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~--V~~~~~~~---~~~~~s~s~D~ 81 (342)
|+-|+.|--.-..++.++..+|-|+-+|.++.-| +.+-|+... .....+-|..+ |-.+.|++ ....+.....+
T Consensus 13 ~tf~kslsl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q 91 (1081)
T KOG0309|consen 13 PTFGKSLSLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ 91 (1081)
T ss_pred CccCceeEEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc
Confidence 6667778777788999999999999998887776 455577653 22223335443 45666763 22344433444
Q ss_pred cEEEEEeccCc----eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC
Q 019384 82 TVRRLVFSHGK----EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG 156 (342)
Q Consensus 82 ~i~~w~~~~~~----~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~ 156 (342)
.-.+|.+.... +.++-+|+.+|+.+.|+|.. ..+++++.|-.+-.||+++.....-. .........-+.+....
T Consensus 92 kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys-~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 92 KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS-TSSWRSAASQVKWNYKD 170 (1081)
T ss_pred hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee-eecccccCceeeecccC
Confidence 44578775543 45678999999999999866 57899999999999999875432111 11111222233455533
Q ss_pred CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEE---EEEee-CCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384 157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRC---VRCYP-NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC 232 (342)
Q Consensus 157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~---v~~~~-~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~ 232 (342)
-.+++.+-++.|++||++.+..+.... +.++.. +.+.. .-..+...+.|+++ ++||.........+....
T Consensus 171 p~vlasshg~~i~vwd~r~gs~pl~s~----K~~vs~vn~~~fnr~~~s~~~s~~~d~tv--kfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 171 PNVLASSHGNDIFVWDLRKGSTPLCSL----KGHVSSVNSIDFNRFKYSEIMSSSNDGTV--KFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred cchhhhccCCceEEEeccCCCcceEEe----cccceeeehHHHhhhhhhhhcccCCCCce--eeecccccccccceeccc
Confidence 345556777889999999887653322 222222 22211 11235666777765 568875433222221111
Q ss_pred EEecCCCCceeeeeeEEEEcCCCCeEEE--ecCCCeEEEEeCC---------C-ceeeeccCCCCcceEEEEECCCC
Q 019384 233 HRKSEAGRDIVYPVNAIAFHPIYGTFAT--GGCDGFVNVWDGN---------N-KKRLYQYSKYPTSIAALSFSRDG 297 (342)
Q Consensus 233 h~~~~~~~~~~~~v~~v~~sp~~~~l~s--gs~Dg~I~iWd~~---------~-~~~~~~~~~~~~~V~~v~~spdg 297 (342)
.++|.--+|-|-|+-+++ .--+..+.+++.+ + .+.+..|.||...|....|-..+
T Consensus 245 ----------~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 245 ----------NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK 311 (1081)
T ss_pred ----------cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcc
Confidence 124555555555442222 1112245555433 2 34577888998888766665433
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=4.1e-08 Score=89.26 Aligned_cols=180 Identities=15% Similarity=0.177 Sum_probs=107.5
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCc---ceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ---ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVY 171 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~---~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw 171 (342)
.+.+|+..|+.++-..+.+.++++|.|+++|+|.++...-. ....+....+...+.++-+-.+.-.+++.|+.|.+|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlW 809 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLW 809 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceee
Confidence 46799999998876666778999999999999988642110 001112222344454554444433557888999999
Q ss_pred eCCCCCCcccccccccceeeEEEEEeeC-CceEE--EEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384 172 DLRNMSQPEQRRESSLKYQTRCVRCYPN-GTGYA--LSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248 (342)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 248 (342)
|--.+....+....+-.....-+.+.++ ...++ .++...++ +++|.+.......+... +......-+++
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTV--Kl~DaRsce~~~E~kVc------na~~Pna~~R~ 881 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTV--KLFDARSCEWTCELKVC------NAPGPNALTRA 881 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhh--eeeecccccceeeEEec------cCCCCchheeE
Confidence 9654432222221111112223333443 23333 33455544 56888654433332211 11111124788
Q ss_pred EEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC
Q 019384 249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS 282 (342)
Q Consensus 249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 282 (342)
++.-|.|++++.|-..|.|-+-|.++++.+..+.
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 9999999999999999999999999998766443
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=5.2e-07 Score=82.26 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=109.6
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-------ee-eeeeecCCceEEEEEeCCCCeEEEecCCcEEEEE
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-------VL-RGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLV 87 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-------~~-~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~ 87 (342)
.+|.+.|.+++--.+.+.++++|.|+||++|.+... .+ .+...|+.+|.++.|..+.+ ..++.|+.+.+||
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWD 810 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWD 810 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeec
Confidence 367788888877778889999999999999998531 12 33347999999999975543 5667899999999
Q ss_pred eccCcee--ec----ccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCC---CCcEEEEeccCC
Q 019384 88 FSHGKED--IL----GKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQ---PERVYSLSLVGN 157 (342)
Q Consensus 88 ~~~~~~~--~~----~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~---~~~v~~~s~~~~ 157 (342)
.--++.. +. .+-...|.|+.-. +...+ +-|+.+.++|++|.+.+.-.....+-.... ..+...+...|+
T Consensus 811 PFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN 889 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGN 889 (1034)
T ss_pred ccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcc
Confidence 6544421 11 1223456666432 33344 445889999999988654221111111112 234455666788
Q ss_pred eEEEEEcCCeEEEEeCCCCCC
Q 019384 158 RLVVATAGRHVNVYDLRNMSQ 178 (342)
Q Consensus 158 ~~~~~s~d~~v~iwd~~~~~~ 178 (342)
.++.+-..|+|.+.|.|++..
T Consensus 890 ~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 890 KLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred hhhHHhcCCcEEEEecCCCce
Confidence 999999999999999999863
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.64 E-value=2.1e-05 Score=72.44 Aligned_cols=232 Identities=18% Similarity=0.101 Sum_probs=127.5
Q ss_pred CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEe
Q 019384 30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYS 109 (342)
Q Consensus 30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~ 109 (342)
.++++..++.+|.+.-+|..+++.+....-.+.+.+.-...++.++.++.++.+..+|..+++..-...-...+.+....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v 143 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV 143 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence 35688889999999999998887665443333433222234667788889999999998887743211111222221111
Q ss_pred CCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCc---EEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccccc-
Q 019384 110 YAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER---VYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES- 185 (342)
Q Consensus 110 ~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~---v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~- 185 (342)
.++.++.++.|+.|..||.+++... ........... ..+....++.++.++.++.+..+|+++++...+....
T Consensus 144 -~~~~v~v~~~~g~l~a~d~~tG~~~--W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 144 -ANGLVVVRTNDGRLTALDAATGERL--WTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred -ECCEEEEECCCCeEEEEEcCCCcee--eEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 2456777888999999998765431 11110000000 0011112356777888889999999887533211100
Q ss_pred ccc-ee---eEEEEEee--CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEE
Q 019384 186 SLK-YQ---TRCVRCYP--NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFA 259 (342)
Q Consensus 186 ~~~-~~---~~~v~~~~--~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~ 259 (342)
... .. ...+...| .+..+++++.++.+ +.+|..+.. ..|.... . .....+ .++..++
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l--~a~d~~tG~--~~W~~~~------~-----~~~~p~--~~~~~vy 283 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRV--AALDLRSGR--VLWKRDA------S-----SYQGPA--VDDNRLY 283 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEE--EEEECCCCc--EEEeecc------C-----CccCce--EeCCEEE
Confidence 000 00 00000011 23456666666654 457764332 2222110 0 011111 2467788
Q ss_pred EecCCCeEEEEeCCCceeeecc
Q 019384 260 TGGCDGFVNVWDGNNKKRLYQY 281 (342)
Q Consensus 260 sgs~Dg~I~iWd~~~~~~~~~~ 281 (342)
.++.||.|+.+|..+++.+.+.
T Consensus 284 v~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 284 VTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EECCCCeEEEEECCCCcEEEcc
Confidence 8889999999999998877655
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.62 E-value=4.5e-06 Score=76.71 Aligned_cols=174 Identities=18% Similarity=0.129 Sum_probs=114.4
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCceeeeeeec----CCceEEEEEe--CC-----------------CC--eEEEecCCc
Q 019384 28 SNHSDHLLVSSWDKSVRLYDASANVLRGEFMH----GGPVLDCCFH--DD-----------------SS--GFSASADHT 82 (342)
Q Consensus 28 s~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h----~~~V~~~~~~--~~-----------------~~--~~s~s~D~~ 82 (342)
+|-..++|....||.+|+||...+.++.++.. ++..++..|. .+ ++ ++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45678999999999999999998887776642 2333444442 11 11 346677888
Q ss_pred EEEEEeccCcee-ec--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE
Q 019384 83 VRRLVFSHGKED-IL--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL 159 (342)
Q Consensus 83 i~~w~~~~~~~~-~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~ 159 (342)
|.+++...++.. .+ ..|-+.|.++-++.+-..|.|++.|..+..|+...... ...... .+..+.++++.++.-
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~--~~~~~~--~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI--IRIWKE--QKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee--eeeecc--CCCccceEEEcCCCC
Confidence 888888777742 22 57999999999998888999999999999999764321 112221 223344555554433
Q ss_pred EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC-----CceEEEEc
Q 019384 160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN-----GTGYALSS 207 (342)
Q Consensus 160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~s 207 (342)
..+++.+.|++||+.+.+...... ++...+.+++|--. |.+++++.
T Consensus 158 ~l~~as~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 158 ILLTASRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred EEEeccceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeecc
Confidence 334555789999999875443332 34455677776554 45555443
No 271
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.62 E-value=1.1e-07 Score=56.71 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=32.8
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEc
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd 128 (342)
..+.+|...|++++|+|++..|+||+.|++|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35789999999999999999999999999999997
No 272
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.61 E-value=8.5e-08 Score=57.19 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEE
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD 47 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd 47 (342)
+.|.+.|++|+|+|++++|+|++.|++|+|||
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57899999999999999999999999999997
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.60 E-value=2e-06 Score=74.25 Aligned_cols=241 Identities=16% Similarity=0.211 Sum_probs=144.5
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-ceeeeeeecC--CceEEEEEeCCCCeE-EEecCCcEEEEEeccC
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHG--GPVLDCCFHDDSSGF-SASADHTVRRLVFSHG 91 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-~~~~~~~~h~--~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~ 91 (342)
++|.+.|++...-|-.+-+++.+.|.++|||--.+ +.....+-|. .++++..+......+ .+=..+++.-+.+...
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 68889999988888888999999999999997533 3322222233 456777777655544 4444556655544322
Q ss_pred c-----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384 92 K-----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR 166 (342)
Q Consensus 92 ~-----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~ 166 (342)
- .+....|...|..+-|+-..+.+++.+.|+.+.---.+++.. ++.+........+.++-.....+-..+
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~-----lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR-----LGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc-----ccceEeeccCCCCceeeEEEEeccccc
Confidence 1 234457999999999998888999999998764322222211 111110000000000000111122223
Q ss_pred eEEEEeCCCCCC-cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384 167 HVNVYDLRNMSQ-PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP 245 (342)
Q Consensus 167 ~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~ 245 (342)
.|....+..... ++... .++...+.+++|.+....+.+++.+..+.+ ||+... ....+.+.+|.+ .
T Consensus 176 qvt~lr~~~~~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~--wdigg~-~g~~~el~gh~~---------k 242 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIM--WDIGGR-KGTAYELQGHND---------K 242 (404)
T ss_pred ceEEEEEeecCCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEE--EeccCC-cceeeeeccchh---------h
Confidence 333222211111 12221 233456788889999888999999988754 887432 223345555544 4
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~ 274 (342)
|.++.+-+.-+.|.++++||-|.+|+.+.
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 77777777788899999999999999764
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.59 E-value=5e-07 Score=92.33 Aligned_cols=193 Identities=16% Similarity=0.228 Sum_probs=127.1
Q ss_pred CceEEEEEeCCC-CeEEEecCCcEEEEEeccCcee-ec-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcce
Q 019384 61 GPVLDCCFHDDS-SGFSASADHTVRRLVFSHGKED-IL-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQER 137 (342)
Q Consensus 61 ~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~~~-~~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~ 137 (342)
..|.++.=+|.. ..+|++.||.+++|.+..+... .+ ..-...|+.+.|+.+|+.+..+..||.|.+|-.. +...
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~---pk~~ 2285 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS---PKPY 2285 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC---Ccce
Confidence 445555544443 3479999999999999887632 22 1222788999999999999999999999999864 1111
Q ss_pred eeeeecCCCCcEEEEeccCCeEEEEE---cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384 138 TLVGTYPQPERVYSLSLVGNRLVVAT---AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM 214 (342)
Q Consensus 138 ~~~~~~~~~~~v~~~s~~~~~~~~~s---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i 214 (342)
...+. +......|.+-+..+++++ .++.+.+||..-........ ..+....+++++-|..+.+++|+.+|.+.
T Consensus 2286 ~s~qc--hnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~- 2361 (2439)
T KOG1064|consen 2286 TSWQC--HNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVC- 2361 (2439)
T ss_pred ecccc--CCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEE-
Confidence 11222 2223334555455555543 33579999965432211111 22334568899999999999999999874
Q ss_pred EEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC
Q 019384 215 EFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS 282 (342)
Q Consensus 215 ~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 282 (342)
+||++..+....+. + ++ ...++++|+..|+|+||++.....+..+.
T Consensus 2362 -l~D~rqrql~h~~~------------------~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2362 -LFDIRQRQLRHTFQ------------------A--LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred -EeehHHHHHHHHhh------------------h--hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 59997654433221 1 33 46789999999999999998766555543
No 275
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.58 E-value=2.8e-05 Score=65.93 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=71.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-------ecCCceEEEEEeCCC-------CeEEEecCCcEE
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-------MHGGPVLDCCFHDDS-------SGFSASADHTVR 84 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-------~h~~~V~~~~~~~~~-------~~~s~s~D~~i~ 84 (342)
.-...-|+||||+..||-+...|+|++||+.+..+.... .-..+|-++.|.+-. +++.-..+|.++
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 345678999999999999999999999999765432211 123456777785322 456778888888
Q ss_pred EEEeccCc-----e---eecc-cCCcceeEEEEeCCCCEEEEeeCCC
Q 019384 85 RLVFSHGK-----E---DILG-KHDAPVRCIEYSYAAGQVITGSWDK 122 (342)
Q Consensus 85 ~w~~~~~~-----~---~~~~-~h~~~V~~~~~~~~~~~l~sgs~D~ 122 (342)
-+-+..+. + ..+. .+...|.++.++|..++|+.|+...
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 77764332 1 1122 2356799999999888887766543
No 276
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.58 E-value=2.9e-05 Score=66.49 Aligned_cols=223 Identities=18% Similarity=0.143 Sum_probs=123.0
Q ss_pred CCCcEEEEECCCceeeeeeecC---CceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEE
Q 019384 39 WDKSVRLYDASANVLRGEFMHG---GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQV 115 (342)
Q Consensus 39 ~Dgti~vwd~~~~~~~~~~~h~---~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l 115 (342)
.+|+|..||..+++.+...... +...+.....++.+++++.++.+..||..+++..--..-...+.... ...++.+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 3789999999888766655442 22222234467778888899999999998887431111111111111 1245677
Q ss_pred EEeeCCCcEEEEcCCCCCCcceeeeeecCC-C-CcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccc--ee-
Q 019384 116 ITGSWDKSLKCWDPRGASGQERTLVGTYPQ-P-ERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK--YQ- 190 (342)
Q Consensus 116 ~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~-~-~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~--~~- 190 (342)
+.++.|+.|..+|.+++...........+. . .........++.++++..++.|..+|+++++........... .+
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 777788899999987654321101111010 1 112234444778888888999999999988543222111101 00
Q ss_pred -----eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC
Q 019384 191 -----TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG 265 (342)
Q Consensus 191 -----~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg 265 (342)
...-....++ .+.++..++.+ +.+ |..+... .|.... ..+.. ...+++..|+.++.++
T Consensus 160 ~~~~~~~~~~~~~~~-~v~~~~~~g~~-~~~-d~~tg~~--~w~~~~-----------~~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 160 SSFSDINGSPVISDG-RVYVSSGDGRV-VAV-DLATGEK--LWSKPI-----------SGIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp EEETTEEEEEECCTT-EEEEECCTSSE-EEE-ETTTTEE--EEEECS-----------S-ECE-CEECCCTEEEEEETTT
T ss_pred eeecccccceEEECC-EEEEEcCCCeE-EEE-ECCCCCE--EEEecC-----------CCccC-CceeeCCEEEEEeCCC
Confidence 0111122234 56666666652 223 6654331 121110 01111 1345678888877999
Q ss_pred eEEEEeCCCceeee
Q 019384 266 FVNVWDGNNKKRLY 279 (342)
Q Consensus 266 ~I~iWd~~~~~~~~ 279 (342)
.|..||.++++.+.
T Consensus 223 ~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 223 RLYALDLKTGKVVW 236 (238)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCCCEEe
Confidence 99999999998764
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.58 E-value=3.8e-05 Score=79.24 Aligned_cols=112 Identities=17% Similarity=0.231 Sum_probs=74.7
Q ss_pred CCeEEEEEcCCCCeEEEE-eCCCcEEEEECCCceeeeeeec-----------------CCceEEEEEeC-CCCeE-EEec
Q 019384 20 DGISNLRFSNHSDHLLVS-SWDKSVRLYDASANVLRGEFMH-----------------GGPVLDCCFHD-DSSGF-SASA 79 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~-s~Dgti~vwd~~~~~~~~~~~h-----------------~~~V~~~~~~~-~~~~~-s~s~ 79 (342)
+.-..|+++++++.|..+ ...+.|+++|..++......+- -....+++|++ ++.++ +.+.
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 345789999988866554 4557899999877654333210 01235788986 55554 5567
Q ss_pred CCcEEEEEeccCceeecccC---------------CcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCC
Q 019384 80 DHTVRRLVFSHGKEDILGKH---------------DAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRG 131 (342)
Q Consensus 80 D~~i~~w~~~~~~~~~~~~h---------------~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~ 131 (342)
++.|++|+...+....+.+. -.....++++|+++.| ++-+.++.|++||+++
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT 771 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 78899999876654322211 1234579999998844 5667779999999864
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.57 E-value=0.00017 Score=73.25 Aligned_cols=277 Identities=14% Similarity=0.171 Sum_probs=156.7
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEE----ECCCceeeeeeecCCceEEEEEeCCCCeE-EEecCCcEEEEEecc-
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLY----DASANVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSH- 90 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vw----d~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~- 90 (342)
...+.|.++.|-++...|..+..+|-|-+. |.....+-..-.-..+|.+++|+||..++ .++.++.+.++...-
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 446789999999999999999999999999 55544333323457899999999998865 566677765443211
Q ss_pred ------------C----------c-eeeccc------------------------CCcceeEEEEeCCCCEEEEeeC---
Q 019384 91 ------------G----------K-EDILGK------------------------HDAPVRCIEYSYAAGQVITGSW--- 120 (342)
Q Consensus 91 ------------~----------~-~~~~~~------------------------h~~~V~~~~~~~~~~~l~sgs~--- 120 (342)
+ + +.-+.| +.+.-..++|-.||.+||..+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 0 0 000100 1123346778889999988775
Q ss_pred C---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc---CCeEEEEeCCCCCCcc-cccccccceeeEE
Q 019384 121 D---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA---GRHVNVYDLRNMSQPE-QRRESSLKYQTRC 193 (342)
Q Consensus 121 D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~---d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~ 193 (342)
+ +.||+|+-+ +..........+-....++.++|+.|++.-. ...|.+|.-...+... ..........+..
T Consensus 233 ~~~~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 233 TGSRRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCceeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 479999964 2211111111222334455667777766543 1346677533221111 0000112345678
Q ss_pred EEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeC
Q 019384 194 VRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDG 272 (342)
Q Consensus 194 v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~ 272 (342)
+.|.+++..+++...+. +.+|.... ..|.++........ ..+..+.|+|... .|.....+|.+..++.
T Consensus 310 l~Wn~ds~iLAv~~~~~---vqLWt~~N----YHWYLKqei~~~~~----~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR---VQLWTRSN----YHWYLKQEIRFSSS----ESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEECCCCCEEEEEecCC---ceEEEeeC----CEEEEEEEEEccCC----CCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 99999999988876554 56676632 22222221111110 1234478887533 3555444444444331
Q ss_pred ----C----------------Ccee--eeccC-------------CCCcceEEEEECCCCCEEEEEEecc
Q 019384 273 ----N----------------NKKR--LYQYS-------------KYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 273 ----~----------------~~~~--~~~~~-------------~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
. +|.. ++.|. .....|.+++|++++..+|+-.+++
T Consensus 379 ~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~ 448 (928)
T PF04762_consen 379 AWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDG 448 (928)
T ss_pred EEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCC
Confidence 1 0111 11111 2357899999999998777766654
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=1.9e-05 Score=73.42 Aligned_cols=201 Identities=10% Similarity=0.044 Sum_probs=113.5
Q ss_pred cEEEEEeccCceeecccCCcceeEEEEeCCCCE-EEEeeCC---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC
Q 019384 82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ-VITGSWD---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN 157 (342)
Q Consensus 82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~sgs~D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~ 157 (342)
.|.+-|.+..+...+.... .+..-.|+||++. ++-.+.+ ..|.++|+.++.. ..+...........++++++
T Consensus 170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---EKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---EEEecCCCcEEeeEECCCCC
Confidence 3444444444444333333 6778999999984 5544444 4588888865432 22322222233456788887
Q ss_pred eEEEE-EcC--CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeE
Q 019384 158 RLVVA-TAG--RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCH 233 (342)
Q Consensus 158 ~~~~~-s~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h 233 (342)
.++.. +.+ ..|.++|+..+.... .. ..........|+|||+.++..+. .+...|+.+|.......+ ....
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~--LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt~~-- 319 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ--IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VVFH-- 319 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE--cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-CccC--
Confidence 66543 333 357777887653211 11 11111223469999988877663 455567778875432211 1110
Q ss_pred EecCCCCceeeeeeEEEEcCCCCeEEEecCC---------CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384 234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCD---------GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304 (342)
Q Consensus 234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---------g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s 304 (342)
+ .....|+|+|+.|+-.+.. ..|.+.|++++.. +.++.. ......+|||||+.|+-.+
T Consensus 320 -----g------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 320 -----G------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred -----C------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEE
Confidence 1 0123799999987655432 3678888876643 334332 2334689999999888775
Q ss_pred e
Q 019384 305 S 305 (342)
Q Consensus 305 ~ 305 (342)
.
T Consensus 387 ~ 387 (419)
T PRK04043 387 Y 387 (419)
T ss_pred c
Confidence 4
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.56 E-value=0.00012 Score=66.60 Aligned_cols=269 Identities=15% Similarity=0.147 Sum_probs=148.8
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEEEeCCC---------------cEEEEECCCceeeeee-ecCCc--eE-EEEEeCCCCe
Q 019384 14 LGNPPSDGISNLRFSNHSDHLLVSSWDK---------------SVRLYDASANVLRGEF-MHGGP--VL-DCCFHDDSSG 74 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dg---------------ti~vwd~~~~~~~~~~-~h~~~--V~-~~~~~~~~~~ 74 (342)
|.......|..+.|||.+.+|.|=+... .+.+||+.++.+...+ ....+ .+ -+.|+-++.+
T Consensus 66 l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y 145 (561)
T COG5354 66 LVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKY 145 (561)
T ss_pred eeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchh
Confidence 3344557899999999999999865544 4999999988765443 33333 34 5667644333
Q ss_pred EEEecCCcEEEEEeccCceeecccC---CcceeEEEEeCCCC--EEE-----EeeCCCcEEEEcCCCCCCcceeeeeecC
Q 019384 75 FSASADHTVRRLVFSHGKEDILGKH---DAPVRCIEYSYAAG--QVI-----TGSWDKSLKCWDPRGASGQERTLVGTYP 144 (342)
Q Consensus 75 ~s~s~D~~i~~w~~~~~~~~~~~~h---~~~V~~~~~~~~~~--~l~-----sgs~D~~I~iWd~~~~~~~~~~~~~~~~ 144 (342)
+.--....+.++++ +.+.....-| ...|....|+|.++ .|+ ....++++++|.+..........+ ++
T Consensus 146 ~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk 222 (561)
T COG5354 146 VARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FK 222 (561)
T ss_pred hhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--Ee
Confidence 22123346777776 4332111111 24467777887532 232 245566777776642221111101 01
Q ss_pred CCCcEEEEeccCCeEEEE----E-------cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384 145 QPERVYSLSLVGNRLVVA----T-------AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA 213 (342)
Q Consensus 145 ~~~~v~~~s~~~~~~~~~----s-------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~ 213 (342)
....-+.+...++.++.- . +...+.|++++..+.+... .+...+-.+.|.|.+..+++.+.-....
T Consensus 223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec---cccccceeeeecccCCceeEEecccccc
Confidence 111111112223322211 1 1134677777654333321 2344566788999988887776333334
Q ss_pred EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC---CeEEEEeCCCceeee-ccCCCCcceE
Q 019384 214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD---GFVNVWDGNNKKRLY-QYSKYPTSIA 289 (342)
Q Consensus 214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---g~I~iWd~~~~~~~~-~~~~~~~~V~ 289 (342)
+.++|++.. . .+.+.- .+=+.+.|+|.+++++.++-| |.|-+||..+...+. .+.+- ...
T Consensus 300 ~s~~~lr~N--l-~~~~Pe-----------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s 363 (561)
T COG5354 300 VSVFDLRGN--L-RFYFPE-----------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTS 363 (561)
T ss_pred eeecccccc--e-EEecCC-----------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--Cce
Confidence 456777532 1 111110 023568899999999887654 579999988655443 44433 245
Q ss_pred EEEECCCCCEEEEEE
Q 019384 290 ALSFSRDGRLLAVAS 304 (342)
Q Consensus 290 ~v~~spdg~~las~s 304 (342)
-+.|||||+++-+.-
T Consensus 364 ~~~wspd~qF~~~~~ 378 (561)
T COG5354 364 YCDWSPDGQFYDTDT 378 (561)
T ss_pred EeeccCCceEEEecC
Confidence 678999999887654
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.55 E-value=3.6e-07 Score=80.18 Aligned_cols=98 Identities=20% Similarity=0.179 Sum_probs=76.2
Q ss_pred EEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc--eeecccCCcceeEEEEeCCC
Q 019384 36 VSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAA 112 (342)
Q Consensus 36 s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~--~~~~~~h~~~V~~~~~~~~~ 112 (342)
.++....+.+|....+..+.+.+|-.-+++++|++|++. +++--|..||+-...... ....-||+..|..++..+ +
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-N 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-C
Confidence 345556666776666677777889999999999977765 588888888877665543 234578999999999885 4
Q ss_pred CEEEEeeCCCcEEEEcCCCCCC
Q 019384 113 GQVITGSWDKSLKCWDPRGASG 134 (342)
Q Consensus 113 ~~l~sgs~D~~I~iWd~~~~~~ 134 (342)
..|+|||.|++|++||.+++..
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred ceeeecCCCCcEEEEecccCCc
Confidence 5689999999999999987643
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.54 E-value=0.00024 Score=61.27 Aligned_cols=230 Identities=16% Similarity=0.112 Sum_probs=123.1
Q ss_pred EEEEcC-CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCceeecc----
Q 019384 24 NLRFSN-HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKEDILG---- 97 (342)
Q Consensus 24 ~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~~~~~---- 97 (342)
.++|.+ ++.++++--..+.|..|+..++...... ..+ ..++.+. +++.++.+..++ +.++|..+++...+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEET
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccC
Confidence 578888 6777777778899999999887654322 222 6677776 677777766544 455588777643321
Q ss_pred -c-CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384 98 -K-HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN 175 (342)
Q Consensus 98 -~-h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~ 175 (342)
. .....+.+++.++|...++........ . . ....+..+... +.+....-
T Consensus 81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~--------~-----~----~~g~v~~~~~~----------~~~~~~~~-- 131 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGAS--------G-----I----DPGSVYRIDPD----------GKVTVVAD-- 131 (246)
T ss_dssp TCSCTEEEEEEEE-TTS-EEEEEECCBCTT--------C-----G----GSEEEEEEETT----------SEEEEEEE--
T ss_pred CCcccCCCceEEEcCCCCEEEEecCCCccc--------c-----c----cccceEEECCC----------CeEEEEec--
Confidence 1 335577888888887656544321100 0 0 00111112211 11111100
Q ss_pred CCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhh-cccceeeeEEecCCCCceeeeeeEEEEcC
Q 019384 176 MSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQ-AKKYAFKCHRKSEAGRDIVYPVNAIAFHP 253 (342)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp 253 (342)
.+ ...+.++++|+++.+++. +..+. |+.++...... ......-.+.... .+....+++..
T Consensus 132 ----------~~-~~pNGi~~s~dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~-----~g~pDG~~vD~ 193 (246)
T PF08450_consen 132 ----------GL-GFPNGIAFSPDGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDFPGG-----PGYPDGLAVDS 193 (246)
T ss_dssp ----------EE-SSEEEEEEETTSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE-SSS-----SCEEEEEEEBT
T ss_pred ----------Cc-ccccceEECCcchheeecccccce--eEEEeccccccceeeeeeEEEcCCC-----CcCCCcceEcC
Confidence 00 123556666666655433 33343 33444432111 0000000111000 01255688999
Q ss_pred CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE-CCCCCEEEEEE
Q 019384 254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF-SRDGRLLAVAS 304 (342)
Q Consensus 254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~-spdg~~las~s 304 (342)
+|+.+++....+.|.++|.+ ++.+..+.--...+++++| .||.+.|-+.+
T Consensus 194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 194 DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 99888877778899999988 7766655433458999999 58877555544
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.52 E-value=1e-06 Score=90.22 Aligned_cols=184 Identities=15% Similarity=0.124 Sum_probs=119.4
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee---eeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCceee
Q 019384 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---EFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKEDI 95 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~---~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~~~ 95 (342)
..|..+.=.|.-.+-+||+.||.|++|....+.... +.+. ..|+.+.|+ .++..-.+-.||.+.+|.........
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTS 2287 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcceec
Confidence 455555555666788999999999999986554222 2233 678889997 55555577789999999877433334
Q ss_pred cccCCcceeEEEEeCCCCEEEEe---eCCCcEEEEcCCCCCCcceeee-eecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384 96 LGKHDAPVRCIEYSYAAGQVITG---SWDKSLKCWDPRGASGQERTLV-GTYPQPERVYSLSLVGNRLVVATAGRHVNVY 171 (342)
Q Consensus 96 ~~~h~~~V~~~~~~~~~~~l~sg---s~D~~I~iWd~~~~~~~~~~~~-~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw 171 (342)
..-|......+.|.. ..++++ +.++.+.+||.--.... ..+ ..|.+..++....+.-..+++|+.+|.|++|
T Consensus 2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~--s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN--SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred cccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc--ceeeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence 456887777777764 556653 55678999996533221 112 3333344444444444578999999999999
Q ss_pred eCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh
Q 019384 172 DLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA 222 (342)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~ 222 (342)
|++..+.... .. +++ ...+++.++..|.+. +|+..+.
T Consensus 2364 D~rqrql~h~-----~~------~~~-~~~~f~~~ss~g~ik--Iw~~s~~ 2400 (2439)
T KOG1064|consen 2364 DIRQRQLRHT-----FQ------ALD-TREYFVTGSSEGNIK--IWRLSEF 2400 (2439)
T ss_pred ehHHHHHHHH-----hh------hhh-hhheeeccCcccceE--EEEcccc
Confidence 9985321111 11 022 445688888888765 5887654
No 284
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.51 E-value=1.8e-06 Score=73.03 Aligned_cols=110 Identities=20% Similarity=0.164 Sum_probs=86.9
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEECCCceee---eeeecCCceEEEEEe--CCCCeEEEecCCcEEEEEeccCceee-
Q 019384 22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR---GEFMHGGPVLDCCFH--DDSSGFSASADHTVRRLVFSHGKEDI- 95 (342)
Q Consensus 22 V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~---~~~~h~~~V~~~~~~--~~~~~~s~s~D~~i~~w~~~~~~~~~- 95 (342)
-.++.|++-+..++++-.+|.+-+-+.....+. ....|+-+.+.+.|+ ....+++||.|+.+.-||++..+...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 357888999999999989999986665544332 234699999999997 34556899999999999998554333
Q ss_pred --cccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCC
Q 019384 96 --LGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRG 131 (342)
Q Consensus 96 --~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~ 131 (342)
...|...|.|+.-+| +..+|+||+.|-.|++||+|+
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 346889999998776 457899999999999999984
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.49 E-value=5.9e-05 Score=68.02 Aligned_cols=211 Identities=16% Similarity=0.142 Sum_probs=124.0
Q ss_pred CCeEEEecCCcEEEEEeccCceeecc-------cCC-----cceeEEE-EeC-CCCEEEEeeCCCcEEEEcCCCCCCcce
Q 019384 72 SSGFSASADHTVRRLVFSHGKEDILG-------KHD-----APVRCIE-YSY-AAGQVITGSWDKSLKCWDPRGASGQER 137 (342)
Q Consensus 72 ~~~~s~s~D~~i~~w~~~~~~~~~~~-------~h~-----~~V~~~~-~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~ 137 (342)
++.+.-+.-|.|.++|.++.+...+. ... .++.-+. |++ +|++++..|- |...|.+.-. +. .
T Consensus 278 GkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~--~~-~ 353 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD--GY-S 353 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC--Ce-e
Confidence 44455556677778887766533221 111 1111121 332 5677777765 3333333211 11 1
Q ss_pred eeeeecCCCCcEEEEeccCCeEEEEEcCC-eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEE
Q 019384 138 TLVGTYPQPERVYSLSLVGNRLVVATAGR-HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF 216 (342)
Q Consensus 138 ~~~~~~~~~~~v~~~s~~~~~~~~~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~ 216 (342)
..+. .....+-..+..+++.++.++.|+ .+-++|.+++... +.+..+ ..+..++.+++|+.++++.... .+++
T Consensus 354 iqv~-~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k--r~e~~l-g~I~av~vs~dGK~~vvaNdr~--el~v 427 (668)
T COG4946 354 IQVG-KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK--RIEKDL-GNIEAVKVSPDGKKVVVANDRF--ELWV 427 (668)
T ss_pred EEcC-CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE--EeeCCc-cceEEEEEcCCCcEEEEEcCce--EEEE
Confidence 1111 112233345666677889999998 6999999886432 222222 3578899999999888776544 5677
Q ss_pred eechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC----eEEEEeCCCceeeeccCCCCcceEEEE
Q 019384 217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG----FVNVWDGNNKKRLYQYSKYPTSIAALS 292 (342)
Q Consensus 217 ~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg----~I~iWd~~~~~~~~~~~~~~~~V~~v~ 292 (342)
+|+..... +. +...+ .+-|..+.|||+++++|-+--+| .|+++|..+++....- ...+.=.+-|
T Consensus 428 ididngnv-~~--idkS~--------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPa 495 (668)
T COG4946 428 IDIDNGNV-RL--IDKSE--------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPA 495 (668)
T ss_pred EEecCCCe-eE--ecccc--------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcc
Confidence 88754422 11 11000 12488899999999999887766 5999999987754322 2222336789
Q ss_pred ECCCCCEEEEEE
Q 019384 293 FSRDGRLLAVAS 304 (342)
Q Consensus 293 ~spdg~~las~s 304 (342)
|.|||++|---|
T Consensus 496 FD~d~ryLYfLs 507 (668)
T COG4946 496 FDPDGRYLYFLS 507 (668)
T ss_pred cCCCCcEEEEEe
Confidence 999999775444
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.48 E-value=0.00015 Score=65.50 Aligned_cols=125 Identities=13% Similarity=0.178 Sum_probs=99.1
Q ss_pred CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCC-cEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCC-cEEE
Q 019384 8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDK-SVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADH-TVRR 85 (342)
Q Consensus 8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dg-ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~-~i~~ 85 (342)
|.-|-.+--++..+|.-.++..++..++.|-.|| .+-|+|..+++.......-+.|.++..++++..+..+.|. .+.+
T Consensus 348 ~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 348 PWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred CCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 3344444557778899999999999999999999 9999999998876666667889999999988866555554 6777
Q ss_pred EEeccCceeecccC-CcceeEEEEeCCCCEEEEeeCCC----cEEEEcCCCC
Q 019384 86 LVFSHGKEDILGKH-DAPVRCIEYSYAAGQVITGSWDK----SLKCWDPRGA 132 (342)
Q Consensus 86 w~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~sgs~D~----~I~iWd~~~~ 132 (342)
.|+++++.+.+... .+-|+.++|+|++..||=+--+| .|+++|..++
T Consensus 428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 78899988776543 46799999999999888665554 7999998753
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.47 E-value=2.6e-06 Score=80.31 Aligned_cols=258 Identities=14% Similarity=0.159 Sum_probs=141.8
Q ss_pred ccCCCCCCCCeEEEEEcCCC--CeEEEEeCCCcEEEEECCCc--eee--eeeecCCceEEEEEeC--CCCeEEEecCCcE
Q 019384 12 RELGNPPSDGISNLRFSNHS--DHLLVSSWDKSVRLYDASAN--VLR--GEFMHGGPVLDCCFHD--DSSGFSASADHTV 83 (342)
Q Consensus 12 ~~~~~~~~~~V~~l~fs~~~--~~l~s~s~Dgti~vwd~~~~--~~~--~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i 83 (342)
+-|++...=.|..+.|+++. ++-+..-......+|++... ..+ -+-+|+.+|+++.|.+ ..-+.+++.|..+
T Consensus 60 r~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~v 139 (1081)
T KOG0309|consen 60 RWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYV 139 (1081)
T ss_pred eeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccc
Confidence 33444444567788888864 34333334455678997532 222 2347889999999973 3456799999999
Q ss_pred EEEEeccCceee--cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---Ce
Q 019384 84 RRLVFSHGKEDI--LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---NR 158 (342)
Q Consensus 84 ~~w~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---~~ 158 (342)
..||+....... +..-...-..++|+-....++..+.-+-|++||++.+.... ..+.. +...+..+.++. ..
T Consensus 140 h~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl-~s~K~--~vs~vn~~~fnr~~~s~ 216 (1081)
T KOG0309|consen 140 HAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL-CSLKG--HVSSVNSIDFNRFKYSE 216 (1081)
T ss_pred eeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcce-EEecc--cceeeehHHHhhhhhhh
Confidence 999998876332 22223445678888766667777777889999998654422 22222 233344455543 36
Q ss_pred EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh--------hhccccee
Q 019384 159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA--------SQAKKYAF 230 (342)
Q Consensus 159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~--------~~~~~~~~ 230 (342)
+.+.+.|++|++||..+.... -......++.+..-.+.|=|....+--+.|.+.+..++-+.. .....+.+
T Consensus 217 ~~s~~~d~tvkfw~y~kSt~e-~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 217 IMSSSNDGTVKFWDYSKSTTE-SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred hcccCCCCceeeecccccccc-cceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 889999999999998753221 111112222222223344444433332222222222222111 01123455
Q ss_pred eeEEecCCCCceeeeeeEEEEcCCCC--eEEEecCCCeEEEEeCCC
Q 019384 231 KCHRKSEAGRDIVYPVNAIAFHPIYG--TFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 231 ~~h~~~~~~~~~~~~v~~v~~sp~~~--~l~sgs~Dg~I~iWd~~~ 274 (342)
.+|.......-=. .=-.+.+..+.+ .|+|-|.|.++|+|-+.+
T Consensus 296 ~GH~D~V~eFlWR-~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 296 VGHDDVVLEFLWR-KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCcchHHHHHhhh-hcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 5664421000000 000112222322 489999999999997653
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.46 E-value=7.4e-06 Score=68.57 Aligned_cols=174 Identities=11% Similarity=0.011 Sum_probs=103.6
Q ss_pred CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcE-EEEeccCCeEEEEEcCCeEEEEeCCCCCCccccccccccee
Q 019384 112 AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERV-YSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQ 190 (342)
Q Consensus 112 ~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v-~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~ 190 (342)
...|+.|+.-|...+|.+.+...-... ........++ ...+-..-.+..++.|.++++.++...........+. ..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--LT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc--cc
Confidence 457889999999999998654321111 1111111111 1112222357788999999999886543322211111 22
Q ss_pred eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEE
Q 019384 191 TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW 270 (342)
Q Consensus 191 ~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iW 270 (342)
...++.++++...++.+...++. +|.+..... +..+.-.+ ...++. -+..|+.....+|++..||++-||
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf--~y~id~~se---y~~~~~~a--~t~D~g---F~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVF--RYAIDDESE---YIENIYEA--PTSDHG---FYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcce--EEEeCCccc---eeeeeEec--ccCCCc---eeeeeccCcceEEEEecCCcEEEE
Confidence 56778899999888777766654 455432221 11110000 011211 256788888999999999999999
Q ss_pred eCCCceee-----eccCCCCcceEEEEECCCCC
Q 019384 271 DGNNKKRL-----YQYSKYPTSIAALSFSRDGR 298 (342)
Q Consensus 271 d~~~~~~~-----~~~~~~~~~V~~v~~spdg~ 298 (342)
|++..... .+-..|.+.+..+.|||-|.
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 99864322 23345889999999998766
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=6.2e-06 Score=77.58 Aligned_cols=235 Identities=14% Similarity=0.140 Sum_probs=139.3
Q ss_pred CceEEEEEe-CCCCeEEEecCCcEEEEEeccCce----------------eecccCCcceeEEEEeCCCCEEEEeeCCCc
Q 019384 61 GPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE----------------DILGKHDAPVRCIEYSYAAGQVITGSWDKS 123 (342)
Q Consensus 61 ~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~----------------~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~ 123 (342)
....++.|. ..+.++.|+.||.+++.-+.+... .++.||...|.-+.|+.+.+.|-|+..+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 345788997 555667889999999987765431 246799999999999988889999999999
Q ss_pred EEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccc-eeeEEEEEeeCC
Q 019384 124 LKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK-YQTRCVRCYPNG 200 (342)
Q Consensus 124 I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 200 (342)
|.+|-+-.+.=.. .+........+.++++ +|..|.++-.||.|.+=.+...+. ....++ .+..-+.|++|.
T Consensus 95 IiVWmlykgsW~E--EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI----wgKeLkg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCE--EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI----WGKELKGQLLAHVLWSEDL 168 (1189)
T ss_pred EEEEeeecccHHH--HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee----cchhcchheccceeecccH
Confidence 9999875432111 0111122334556666 456777777777655433322110 001111 123456688887
Q ss_pred ceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC-CceeeeeeEEEE--------cCCCCeEEEecCCCeEEEEe
Q 019384 201 TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG-RDIVYPVNAIAF--------HPIYGTFATGGCDGFVNVWD 271 (342)
Q Consensus 201 ~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~-~~~~~~v~~v~~--------sp~~~~l~sgs~Dg~I~iWd 271 (342)
..++.+-..+.. .++|...... ++..+.+.-..... ..-...|..+.| -|+...|+.+-..|.+.|-.
T Consensus 169 ~~~Lf~~ange~--hlydnqgnF~-~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 169 EQALFKKANGET--HLYDNQGNFE-RKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred HHHHhhhcCCcE--EEecccccHH-HhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 766666666654 4477543221 11111110000000 000011223332 25788999999999998875
Q ss_pred CCC-ceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 272 GNN-KKRLYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 272 ~~~-~~~~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
-++ ..++-.-.+ -.|..+.|+++|..||+++.+
T Consensus 246 ~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 246 SENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hcCCCCCeEEecc--cEeecceecCCCcEEEEccCc
Confidence 443 222221122 468899999999999998864
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=8.8e-05 Score=69.04 Aligned_cols=191 Identities=9% Similarity=-0.011 Sum_probs=113.5
Q ss_pred CeEEEEEcCCCCe-EEEEeCC---CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe--EEEecCC--cEEEEEeccCc
Q 019384 21 GISNLRFSNHSDH-LLVSSWD---KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG--FSASADH--TVRRLVFSHGK 92 (342)
Q Consensus 21 ~V~~l~fs~~~~~-l~s~s~D---gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~--~s~s~D~--~i~~w~~~~~~ 92 (342)
.+..-+|||||+. ++-.+.+ ..|.++|+.+++........+......|+||+.. ++.+.++ .|.++++.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 5678999999985 6644544 4688888888765555445666777889988753 2444444 46566666666
Q ss_pred eeecccCCcceeEEEEeCCCCEEEEee-CCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC----
Q 019384 93 EDILGKHDAPVRCIEYSYAAGQVITGS-WDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG---- 165 (342)
Q Consensus 93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs-~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d---- 165 (342)
...+..+........|+|||+.|+-.+ ..+ .|.+.|+.++.. ...... .. ....++++++.++..+..
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFH--GK-NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccC--CC-cCceECCCCCEEEEEEcCCCcc
Confidence 554544443334567999998775444 333 566667764332 111111 11 123688888877766543
Q ss_pred -----CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeech
Q 019384 166 -----RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLS 220 (342)
Q Consensus 166 -----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~ 220 (342)
..|.+.|+.++.... .... .......|+|+|+.++..+. .+...+..+++.
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~--LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRR--LTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred cCCCCcEEEEEECCCCCeEE--CCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 257778887653221 1111 12234679999998766553 344445555553
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.41 E-value=0.00028 Score=71.75 Aligned_cols=264 Identities=19% Similarity=0.203 Sum_probs=142.2
Q ss_pred CCCCeEEEEEcCCCCeEEEEeC---C---CcEEEEECCCceeeeeeec-CCceEEEEEeCCCCeEEEecC----CcEEEE
Q 019384 18 PSDGISNLRFSNHSDHLLVSSW---D---KSVRLYDASANVLRGEFMH-GGPVLDCCFHDDSSGFSASAD----HTVRRL 86 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~---D---gti~vwd~~~~~~~~~~~h-~~~V~~~~~~~~~~~~s~s~D----~~i~~w 86 (342)
..++-..|+|-.||.++|..+. + .++|||+-. |.+...... .+--.+++|-|.+.+++++.- ..|..|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4567788999999999998775 3 578899876 444332211 111246788888887765532 233333
Q ss_pred EeccCc--eeec--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeE
Q 019384 87 VFSHGK--EDIL--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRL 159 (342)
Q Consensus 87 ~~~~~~--~~~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~ 159 (342)
.-..-+ +..+ ......|..++|+.|++.||..-.|. |.+|-..+..=...+.+. +.....+..+.++ +..+
T Consensus 287 ErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~-~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 287 ERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR-FSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred ecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE-ccCCCCCCceEECCCCCCEE
Confidence 322111 1122 24556799999999999888766555 999986543210011111 1112222224444 4467
Q ss_pred EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC
Q 019384 160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG 239 (342)
Q Consensus 160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~ 239 (342)
...+.++.+..+++.-.-. . +-...|++...+....+.++. +..++..--+.-. ++...
T Consensus 365 ~v~t~~g~~~~~~~~~~v~----~---------s~~~~~~D~g~vaVIDG~~ll--lTpf~~a~VPPPM---s~~~l--- 423 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVS----R---------SPGSSPNDNGTVAVIDGNKLL--LTPFRRAVVPPPM---SSYEL--- 423 (928)
T ss_pred EEEecCCcEEEEEEEEEEE----e---------cCCCCccCceEEEEEeCCeEE--EecccccCCCchH---hceEE---
Confidence 7777767766655421000 0 000112222222222233332 3333222111110 01110
Q ss_pred CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce--------eeeccC----------CCCcceEEEEECCCCCEEE
Q 019384 240 RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK--------RLYQYS----------KYPTSIAALSFSRDGRLLA 301 (342)
Q Consensus 240 ~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~--------~~~~~~----------~~~~~V~~v~~spdg~~la 301 (342)
....+|++++|++++..+++-..||+|.+|...... ....+. .-...+..++|-.+..+++
T Consensus 424 -~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (928)
T PF04762_consen 424 -ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV 502 (928)
T ss_pred -cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence 112369999999999889999999999999843221 111111 1234578899988887776
Q ss_pred EEEec
Q 019384 302 VASSY 306 (342)
Q Consensus 302 s~s~~ 306 (342)
..+..
T Consensus 503 ~~~~~ 507 (928)
T PF04762_consen 503 LSDSD 507 (928)
T ss_pred EEecC
Confidence 66553
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.39 E-value=3.6e-06 Score=71.78 Aligned_cols=199 Identities=14% Similarity=0.275 Sum_probs=115.1
Q ss_pred CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceee---eeecC----------CCCcEEEEecc----CCeEEEE
Q 019384 100 DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTL---VGTYP----------QPERVYSLSLV----GNRLVVA 162 (342)
Q Consensus 100 ~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~---~~~~~----------~~~~v~~~s~~----~~~~~~~ 162 (342)
.+.|+++.|...|.+|+||...|.+.++.-+...+..... ++.+. ....+..+.+. .+.++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3568999999888999999888999999754322211111 12111 11223333332 2478889
Q ss_pred EcCCeEEEEeCCCCCC------------------c-----------------------ccccccccceeeEEEEEeeCCc
Q 019384 163 TAGRHVNVYDLRNMSQ------------------P-----------------------EQRRESSLKYQTRCVRCYPNGT 201 (342)
Q Consensus 163 s~d~~v~iwd~~~~~~------------------~-----------------------~~~~~~~~~~~~~~v~~~~~~~ 201 (342)
+.|++|++|.+..... + .+.....++++++++++..+.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 9999999998865310 0 0011123445566777666655
Q ss_pred eEEEEccCCeEEEEEeechhhhhcc-cceeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCc----
Q 019384 202 GYALSSVEGRVAMEFFDLSEASQAK-KYAFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNK---- 275 (342)
Q Consensus 202 ~~~~~s~~~~~~i~~~d~~~~~~~~-~~~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~---- 275 (342)
.++ .+.+- +|.+|++.-..+.. ...++.|.- .+.+..|++..|||.. ..+.-.+..|+|++-|++..
T Consensus 186 t~l-SaDdL--rINLWnl~i~D~sFnIVDiKP~nm----eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 186 TLL-SADDL--RINLWNLEIIDGSFNIVDIKPHNM----EELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred eee-eccce--eeeeccccccCCceEEEeccCccH----HHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 444 34444 44557764221110 011111110 1223357888999974 45666778999999998721
Q ss_pred --eeeec----------cCCCCcceEEEEECCCCCEEEEEEe
Q 019384 276 --KRLYQ----------YSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 276 --~~~~~----------~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
+.+.. +.+-.+.|.++.|||.|+|+++-+.
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy 300 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY 300 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence 11111 1233467899999999999988765
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.2e-06 Score=74.69 Aligned_cols=218 Identities=14% Similarity=0.044 Sum_probs=131.8
Q ss_pred eecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc----eeecccCCcceeEEEEeCCCCEEEEeeC-CCcEEEEcCCC
Q 019384 57 FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK----EDILGKHDAPVRCIEYSYAAGQVITGSW-DKSLKCWDPRG 131 (342)
Q Consensus 57 ~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~----~~~~~~h~~~V~~~~~~~~~~~l~sgs~-D~~I~iWd~~~ 131 (342)
+.|.+.|+-|.-....-.++|+.||.++.|--..-. ...+..|-..|.+++.+.++-++.|.+. |+.+|++|+++
T Consensus 6 ymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred hcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 458888877776666667899999999999644312 1235668888999999999988999777 99999999875
Q ss_pred CCCcceeeeeecCCCCcEEEEecc-CC---eEEEE-EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE
Q 019384 132 ASGQERTLVGTYPQPERVYSLSLV-GN---RLVVA-TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS 206 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~s~~-~~---~~~~~-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 206 (342)
..-.. .+...-.+..+ ++... ++ .+++. ..++.+.++|-+...++......-+..++.++...+.+..+++.
T Consensus 86 ~Dmin--miKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 86 FDMIN--MIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred cchhh--hcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 33211 11111122222 23222 22 33333 34467999997765433222222222345666777777777766
Q ss_pred ccCCeEEEEEeechhhhhcc----cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee
Q 019384 207 SVEGRVAMEFFDLSEASQAK----KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY 279 (342)
Q Consensus 207 s~~~~~~i~~~d~~~~~~~~----~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~ 279 (342)
...|.+ ..|......+.. .+.++...........-....++.|+|++..+.+-+.|..|++++..+++.++
T Consensus 163 D~~gmV--EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 163 DISGMV--EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ccccee--EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 666654 678875321111 11111100000000000135678999999999999999999999988765544
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=1.1e-06 Score=84.28 Aligned_cols=214 Identities=16% Similarity=0.189 Sum_probs=137.2
Q ss_pred eeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEe-eCCC-cEEEEcCCC
Q 019384 56 EFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITG-SWDK-SLKCWDPRG 131 (342)
Q Consensus 56 ~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sg-s~D~-~I~iWd~~~ 131 (342)
...|....+|++|+ ....++.|+..|.|+++.+.++. +.....|..+|+-+.-+.+|...++. ++.. -..+|+..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 34577888999998 45567799999999999998887 45677899999999988898766554 4444 468999865
Q ss_pred CCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccc--cccceeeEEEEEeeCCceEEEEccC
Q 019384 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRE--SSLKYQTRCVRCYPNGTGYALSSVE 209 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~s~~ 209 (342)
. ...+..+. ....+.|+-.-..-+.++......+||+.+......... ....+.-++..|+|++..++- |
T Consensus 1177 ~-~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---d 1248 (1516)
T KOG1832|consen 1177 T-GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---D 1248 (1516)
T ss_pred c-cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---C
Confidence 2 22111111 122333443322334566667789999998754322121 122334467789999876653 2
Q ss_pred CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceE
Q 019384 210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA 289 (342)
Q Consensus 210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~ 289 (342)
| -+||.+......++.--.- --.=.|||.|..++.-++ |||+++.+.++....-. =.
T Consensus 1249 G----vLWDvR~~~aIh~FD~ft~------------~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc 1305 (1516)
T KOG1832|consen 1249 G----VLWDVRIPEAIHRFDQFTD------------YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QC 1305 (1516)
T ss_pred c----eeeeeccHHHHhhhhhhee------------cccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ce
Confidence 3 3699876544443321100 001259999999988874 89999987776554322 25
Q ss_pred EEEECCCCCEE
Q 019384 290 ALSFSRDGRLL 300 (342)
Q Consensus 290 ~v~~spdg~~l 300 (342)
.+.|+..|..+
T Consensus 1306 ~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1306 AVTFNSTGDVM 1316 (1516)
T ss_pred EEEeccCccch
Confidence 77888887754
No 295
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=0.0003 Score=64.74 Aligned_cols=195 Identities=16% Similarity=0.212 Sum_probs=115.6
Q ss_pred CCCCCCeEEEEEcCCC--CeEE-----EEeCCCcEEEEECCCceeeee-----eecCCceEEEEEeCCCC--eEEEec--
Q 019384 16 NPPSDGISNLRFSNHS--DHLL-----VSSWDKSVRLYDASANVLRGE-----FMHGGPVLDCCFHDDSS--GFSASA-- 79 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~--~~l~-----s~s~Dgti~vwd~~~~~~~~~-----~~h~~~V~~~~~~~~~~--~~s~s~-- 79 (342)
..|..+|+.+.+||.+ ..+| +.|.=..+|||....+..... +...+. ....|...++ ++.++.
T Consensus 162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadk-vqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADK-VQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccce-eEEEeccCCceEEEEEEEee
Confidence 3567899999999863 3454 356778999999863221111 111112 2344543332 233332
Q ss_pred C---------CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEe--eCCCcEEEEcCCCCCCcceeeeeecCCCCc
Q 019384 80 D---------HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITG--SWDKSLKCWDPRGASGQERTLVGTYPQPER 148 (342)
Q Consensus 80 D---------~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg--s~D~~I~iWd~~~~~~~~~~~~~~~~~~~~ 148 (342)
| .++.++.+.......-..-.++|.++.|++++..|+.+ -.=.++.|+|++. .. .+...+.+..
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---~~--v~df~egpRN 315 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---KP--VFDFPEGPRN 315 (566)
T ss_pred cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---CE--eEeCCCCCcc
Confidence 2 23455555422222222336899999999999887654 4446899999863 11 1222233444
Q ss_pred EEEEeccCCeEEEEEcC---CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE----EEEeech
Q 019384 149 VYSLSLVGNRLVVATAG---RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA----MEFFDLS 220 (342)
Q Consensus 149 v~~~s~~~~~~~~~s~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~----i~~~d~~ 220 (342)
..-+++.++.++.|+-+ |.|-+||+.+.+.. .+... ...+-+.|+|+|.++++++..-+.+ +++|+..
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i-~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI-AKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhc-ccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 45577888888888777 68999999885332 11111 2345678999999999887653322 2556653
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.30 E-value=0.0002 Score=66.40 Aligned_cols=230 Identities=15% Similarity=0.094 Sum_probs=122.7
Q ss_pred CCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcc------ee
Q 019384 31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAP------VR 104 (342)
Q Consensus 31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~------V~ 104 (342)
+..+..++.+|.+.-+|..+++++....-.+.+.+.-...++.++.++.++.+..+|..+++..--.....+ ..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence 456777888999999999988766554444444332222356677788888888888888774311110000 00
Q ss_pred EEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCc------E-EEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384 105 CIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER------V-YSLSLVGNRLVVATAGRHVNVYDLRNMS 177 (342)
Q Consensus 105 ~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~------v-~~~s~~~~~~~~~s~d~~v~iwd~~~~~ 177 (342)
+-.. .++.++.++.++.+...|.+++...-............ + ..-...++.+++++.++.+..+|+.+++
T Consensus 200 sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 200 APAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 1111 23456677788988888877543211111100000000 0 0111235677778888999999998875
Q ss_pred CcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe
Q 019384 178 QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT 257 (342)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~ 257 (342)
..-...... ...+ ...+..+++.+.++.+ ..+|..+... .|.... . ... ...+.+. .+..
T Consensus 278 ~~W~~~~~~----~~~~--~~~~~~vy~~~~~g~l--~ald~~tG~~--~W~~~~--~--~~~----~~~sp~v--~~g~ 337 (394)
T PRK11138 278 IVWKREYGS----VNDF--AVDGGRIYLVDQNDRV--YALDTRGGVE--LWSQSD--L--LHR----LLTAPVL--YNGY 337 (394)
T ss_pred EEEeecCCC----ccCc--EEECCEEEEEcCCCeE--EEEECCCCcE--EEcccc--c--CCC----cccCCEE--ECCE
Confidence 432211110 0011 1234455566666654 3466543321 121100 0 000 0111111 2567
Q ss_pred EEEecCCCeEEEEeCCCceeeeccC
Q 019384 258 FATGGCDGFVNVWDGNNKKRLYQYS 282 (342)
Q Consensus 258 l~sgs~Dg~I~iWd~~~~~~~~~~~ 282 (342)
|+.++.||.|++.|..+++.+.+..
T Consensus 338 l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred EEEEeCCCEEEEEECCCCCEEEEEE
Confidence 8889999999999999998876654
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.3e-06 Score=74.05 Aligned_cols=196 Identities=18% Similarity=0.167 Sum_probs=115.4
Q ss_pred cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee---cCCCCcEEEEeccCCeEEEEEc-CCeEEEEeC
Q 019384 98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT---YPQPERVYSLSLVGNRLVVATA-GRHVNVYDL 173 (342)
Q Consensus 98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~v~~~s~~~~~~~~~s~-d~~v~iwd~ 173 (342)
-|.+.|+-+..+ ..+.++++|.||.+|.|....-.+. ..+.. +.......+++.++-.+.+... |..++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGv--EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGV--EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccce--eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 377778777655 4678999999999999985421221 11111 1112222344555556666555 889999999
Q ss_pred CCCCCcccccccccceeeEEEEEeeCC-ceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384 174 RNMSQPEQRRESSLKYQTRCVRCYPNG-TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH 252 (342)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 252 (342)
.+...........++...+++ .++.. ...+..+.-.+..+.++|.........+.- ..|..||..+.+.
T Consensus 84 En~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk---------klH~sPV~~i~y~ 153 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK---------KLHFSPVKKIRYN 153 (558)
T ss_pred eccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceec---------ccccCceEEEEee
Confidence 886554322222233222222 12221 112222322233455688654432222211 1334489999999
Q ss_pred CCCCeEEEecCCCeEEEEeCCC------cee---------eeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 253 PIYGTFATGGCDGFVNVWDGNN------KKR---------LYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 253 p~~~~l~sgs~Dg~I~iWd~~~------~~~---------~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
|.+..+++....|.|..|..+. .+. +..+..-.....++.|+|+|..+++-+.+
T Consensus 154 qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 154 QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 9999999999999999998762 111 11223345677899999999999887653
No 298
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.27 E-value=0.0017 Score=65.27 Aligned_cols=199 Identities=10% Similarity=0.087 Sum_probs=114.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEecCCcEEEEEecc-------
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSH------- 90 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~------- 90 (342)
.+.|.++.|-.+...+..+..+|.|.+-|..+..+...-.-.+.|.+++|+++.+++ .++.++++.+....-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 369999999999999999999999999998776543333467889999999888764 566666664433210
Q ss_pred ----------------Cc-eeeccc------------CCc---------ceeEEEEeCCCCEEEE-----eeCCCcEEEE
Q 019384 91 ----------------GK-EDILGK------------HDA---------PVRCIEYSYAAGQVIT-----GSWDKSLKCW 127 (342)
Q Consensus 91 ----------------~~-~~~~~~------------h~~---------~V~~~~~~~~~~~l~s-----gs~D~~I~iW 127 (342)
++ +.-+.| |.. .=.++.|-.||++|+. ....+.|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 00 000110 111 1135888889988876 3333799999
Q ss_pred cCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE---EcCCeEEEEeCCCCCCccccccccccee-eEEEEEeeCCceE
Q 019384 128 DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA---TAGRHVNVYDLRNMSQPEQRRESSLKYQ-TRCVRCYPNGTGY 203 (342)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~---s~d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 203 (342)
|.+ +.. ..............++-+.|..+++. +.|++|.+|.-.......-...-+.... +..++|..++..+
T Consensus 228 drE-g~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 228 DRE-GAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred ccc-chh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence 965 211 11111111223344555556655543 4445788887433221111111112222 5678898888877
Q ss_pred EEEccCCe-EEEEEeech
Q 019384 204 ALSSVEGR-VAMEFFDLS 220 (342)
Q Consensus 204 ~~~s~~~~-~~i~~~d~~ 220 (342)
++-..... -.+++|.+.
T Consensus 305 Av~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred eeeecccccceEEEEEec
Confidence 76322211 125677763
No 299
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.17 E-value=0.00059 Score=62.26 Aligned_cols=261 Identities=14% Similarity=0.129 Sum_probs=136.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeE-EEecC---------------C
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGF-SASAD---------------H 81 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~-s~s~D---------------~ 81 (342)
.-.+..++|||-|.+|++.-.-| |.+|+-.... +..+ -| ..|..+.|+|.+..+ +-+.. +
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~-~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF-RH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred CcchhheeecCcchheehhhccc-eEEccccchhheeee-ec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 34678899999999998765554 8899875543 3332 23 456777777766544 32222 2
Q ss_pred cEEEEEeccCce-eecccCCcc--ee-EEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC
Q 019384 82 TVRRLVFSHGKE-DILGKHDAP--VR-CIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN 157 (342)
Q Consensus 82 ~i~~w~~~~~~~-~~~~~h~~~--V~-~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~ 157 (342)
.+.+||..++.. ..+.+-..+ .+ -+.|+.++.++|-. .-..+.++++ ++... ...+.... ...+..+++++.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~lr-~~gi~dFsisP~ 184 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE-EHPFKNLR-PVGILDFSISPE 184 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-cCchhhcc-ccceeeEEecCC
Confidence 367888887763 233333323 44 57788777766433 2346888885 22111 11111111 123344444332
Q ss_pred ----eEEE-----EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC---------CeEEEEEeec
Q 019384 158 ----RLVV-----ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE---------GRVAMEFFDL 219 (342)
Q Consensus 158 ----~~~~-----~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~---------~~~~i~~~d~ 219 (342)
.|+. ......+++|.+...+...++. -....-..+.|.+.|..+++-..- +...++++++
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 3333 2334578888876443222111 111122345677777766543221 1123455555
Q ss_pred hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec--CCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384 220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG--CDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG 297 (342)
Q Consensus 220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg 297 (342)
.+. .++... +...+|...+|.|.+..+++.+ .+-.+.++|++.. ....+.. ..=+.+-|||.+
T Consensus 263 ~e~------~i~V~~------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe--~~rNT~~fsp~~ 327 (561)
T COG5354 263 TER------SIPVEK------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE--QKRNTIFFSPHE 327 (561)
T ss_pred ccc------ccceec------cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC--cccccccccCcc
Confidence 321 111110 1224799999999998776544 6778888887753 2222221 111344455555
Q ss_pred CEEEEE
Q 019384 298 RLLAVA 303 (342)
Q Consensus 298 ~~las~ 303 (342)
+|++.+
T Consensus 328 r~il~a 333 (561)
T COG5354 328 RYILFA 333 (561)
T ss_pred cEEEEe
Confidence 554443
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=5.8e-06 Score=71.47 Aligned_cols=142 Identities=12% Similarity=0.139 Sum_probs=97.5
Q ss_pred CCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCcee-----ecccCCccee
Q 019384 31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGKED-----ILGKHDAPVR 104 (342)
Q Consensus 31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~~~-----~~~~h~~~V~ 104 (342)
+.+ ++.+.+.-|-|-|+.++.... +..++.|.+..|.. +..++.|+-.|.|...|+..+... ...-|...|+
T Consensus 225 gyh-fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 225 GYH-FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVT 302 (425)
T ss_pred eee-ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchh
Confidence 444 667778888888888764333 33677899999974 666778899999999999876421 2234888999
Q ss_pred EEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC----cE-EEEeccCCeEEEEEcCCeEEEEeCCCC
Q 019384 105 CIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE----RV-YSLSLVGNRLVVATAGRHVNVYDLRNM 176 (342)
Q Consensus 105 ~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~----~v-~~~s~~~~~~~~~s~d~~v~iwd~~~~ 176 (342)
|+..-. +++.|++++.+|+|++||++..... ..+..++.+. .. .-+......+++++.|-..|||.++.+
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~--~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCK--KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcc--cceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 987766 6788999999999999999853221 1122222211 11 112222336777888888999999875
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.15 E-value=1.9e-05 Score=65.85 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=86.0
Q ss_pred CCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeE----EEEEeechh
Q 019384 146 PERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV----AMEFFDLSE 221 (342)
Q Consensus 146 ~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~----~i~~~d~~~ 221 (342)
+.....++.-++.++++..|+.+.+++.++..+. ..+.........+.+....+..+.++... .+ ..+.|++..
T Consensus 91 p~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~-~~~i~~~~~~~as~~~~~~~~~i~s~~~g-~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 91 IDPNDACTMTDNRVCIGYADGSLAVFSTDKDLAL-MSRIPSIHSGSASRKICRHGNSILSGGCG-NWNAQDNFYANTLDP 168 (319)
T ss_pred CCCcccccccCCceEecCCCceEEEEechHHHhh-hhhcccccccccccceeecccEEecCCcc-eEeeccceeeecccc
Confidence 3334445556778999999999999998763211 11111111111112222233333222211 11 123455432
Q ss_pred hhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCceee-eccCCCCcceEEEEECC-CCC
Q 019384 222 ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRL-YQYSKYPTSIAALSFSR-DGR 298 (342)
Q Consensus 222 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~-~~~~~~~~~V~~v~~sp-dg~ 298 (342)
. ...+..+... ..|.+++-+|..+ .+++|+.||.+.+||.++.... -.++.|..+++-+-|.| ++.
T Consensus 169 ~----~t~~~~~~~~-------~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 169 I----KTLIPSKKAL-------DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred c----cccccccccc-------ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence 1 1112222221 1488999999865 5688899999999999987544 35678999999999998 566
Q ss_pred EEEEEEe
Q 019384 299 LLAVASS 305 (342)
Q Consensus 299 ~las~s~ 305 (342)
.|.+++.
T Consensus 238 ~Lft~se 244 (319)
T KOG4714|consen 238 HLFTCSE 244 (319)
T ss_pred heeEecC
Confidence 8888876
No 302
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.13 E-value=0.0018 Score=59.02 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=63.9
Q ss_pred cCCCCeEEEE---------eCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecc-
Q 019384 28 SNHSDHLLVS---------SWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILG- 97 (342)
Q Consensus 28 s~~~~~l~s~---------s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~- 97 (342)
|||+++++.. +..+.+.|||+.+++..........+....|+|++..+.-..++.|.+.+..++....+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~ 80 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT 80 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence 5777776652 345788999999887665544466788999999999888888888888877665432221
Q ss_pred -c-------C---------CcceeEEEEeCCCCEEEEeeCC-CcEEEE
Q 019384 98 -K-------H---------DAPVRCIEYSYAAGQVITGSWD-KSLKCW 127 (342)
Q Consensus 98 -~-------h---------~~~V~~~~~~~~~~~l~sgs~D-~~I~iW 127 (342)
+ - -+.-..+-|+||+++|+....| ..++.+
T Consensus 81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY 128 (353)
T ss_dssp --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence 1 0 1122457899999988765554 344443
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.12 E-value=0.0043 Score=52.89 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=60.2
Q ss_pred cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC----CCCcEEEEecc--------CCeEEEEEcCCeE
Q 019384 101 APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP----QPERVYSLSLV--------GNRLVVATAGRHV 168 (342)
Q Consensus 101 ~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~----~~~~v~~~s~~--------~~~~~~~s~d~~v 168 (342)
.+=+-++|+||+..||.+...|+|+++|+..... ...-.... ....+..+.+- ...+++....|.+
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l--f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL--FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccccee--EEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 4456799999999999999999999999863221 11101110 01112222221 1256777788888
Q ss_pred EEEeCCCCCCcccc------cccccceeeEEEEEeeCCceEEEEccC
Q 019384 169 NVYDLRNMSQPEQR------RESSLKYQTRCVRCYPNGTGYALSSVE 209 (342)
Q Consensus 169 ~iwd~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~s~~ 209 (342)
+-|-+..+....-. .....+..++++.++|..+.+++++..
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~ 168 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE 168 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence 77765332111000 011223346777788887777766543
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0006 Score=65.96 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=111.7
Q ss_pred CCCCeEEEecCCcEEEEEeccCceeecccCCcc-eeEEEEeCCCCEEEEeeCCC-----cEEEEcCCCCCCcc-eeee--
Q 019384 70 DDSSGFSASADHTVRRLVFSHGKEDILGKHDAP-VRCIEYSYAAGQVITGSWDK-----SLKCWDPRGASGQE-RTLV-- 140 (342)
Q Consensus 70 ~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~sgs~D~-----~I~iWd~~~~~~~~-~~~~-- 140 (342)
..+.++.|+.+|.|.+++-......-+..+... |..+-...+...|+|.+.|. .+++||++...+.. ...+
T Consensus 34 ~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~ 113 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYE 113 (933)
T ss_pred CCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeee
Confidence 445567888888876655433222334444433 44443333345778877775 48999987542221 1222
Q ss_pred ---eec-----CCCCcEEEEeccCCeEEEEEcCCeEEEEe--CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCC
Q 019384 141 ---GTY-----PQPERVYSLSLVGNRLVVATAGRHVNVYD--LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG 210 (342)
Q Consensus 141 ---~~~-----~~~~~v~~~s~~~~~~~~~s~d~~v~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 210 (342)
... ..+..+..++.+-..+++|..+|.|.++. +...+.......+..+..++.+++..+++.++....-.
T Consensus 114 ~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~ 193 (933)
T KOG2114|consen 114 HRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE 193 (933)
T ss_pred eeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc
Confidence 111 12334455555666899999999988874 21111112222334556788888887777633333333
Q ss_pred eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC-CCCcc
Q 019384 211 RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS-KYPTS 287 (342)
Q Consensus 211 ~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~ 287 (342)
.|. .|.+.... +..-.+. .+..+++|..|++....+++|+ +.-+.+||....+.-..+. +|...
T Consensus 194 ~V~--~y~l~gr~-p~~~~ld---------~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 194 QVM--LYSLSGRT-PSLKVLD---------NNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred eeE--EEEecCCC-cceeeec---------cCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEE
Confidence 443 45554221 1111111 1223688999998766344443 2379999988655555555 66543
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0021 Score=62.41 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=116.8
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC--CeEEEecCC-----cEEEEEeccCc-
Q 019384 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS--SGFSASADH-----TVRRLVFSHGK- 92 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~--~~~s~s~D~-----~i~~w~~~~~~- 92 (342)
.|. +|++.+..++-|+.||.|-+.+-.-..+....++...+....+..++ .+++.+.|. .+++|+++..+
T Consensus 27 ~is--c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AIS--CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred cee--EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 555 45788999999999999888876544445566676664444444343 345656554 48999987542
Q ss_pred ---eeec-----cc-----CCcceeEEEEeCCCCEEEEeeCCCcEEEEc--CCCCCCcceeeeeecCCCCcEEEEec--c
Q 019384 93 ---EDIL-----GK-----HDAPVRCIEYSYAAGQVITGSWDKSLKCWD--PRGASGQERTLVGTYPQPERVYSLSL--V 155 (342)
Q Consensus 93 ---~~~~-----~~-----h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd--~~~~~~~~~~~~~~~~~~~~v~~~s~--~ 155 (342)
...+ .. -..++.+++.+.+-+.++.|-.+|.|..+. +-...+. +. .-.+.....++.+.+ +
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~-~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQ-DYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ce-eeeccCCCCceeeEEecC
Confidence 1111 12 235678899998888899999999998873 2111111 11 122334445555555 4
Q ss_pred CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeech
Q 019384 156 GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLS 220 (342)
Q Consensus 156 ~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~ 220 (342)
+...+.+.....|.+|.+.... +........+...+|.++++....++++..+ .+++||..
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~e---~l~fY~sd 243 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGSE---FLYFYDSD 243 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEecCc---eEEEEcCC
Confidence 4443444555679999998433 3333333445567787777665545555433 45788874
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.00 E-value=0.00017 Score=69.95 Aligned_cols=180 Identities=19% Similarity=0.259 Sum_probs=109.9
Q ss_pred eEEEecCCcEEEEEeccCceeeccc-CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384 74 GFSASADHTVRRLVFSHGKEDILGK-HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL 152 (342)
Q Consensus 74 ~~s~s~D~~i~~w~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~ 152 (342)
++-|+....+...|+.+..+..... -...|.=+. .+++.+.+|..-|+|.+-|+++... ...+. .+...+..+
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~--iht~~--aHs~siSDf 223 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFET--IHTFD--AHSGSISDF 223 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCce--eeeee--ccccceeee
Confidence 3445555555566666554322211 112243333 3567889999999999999876432 22333 355667889
Q ss_pred eccCCeEEEEEcCCe---------EEEEeCCCCCCcccccccccceeeEEEEEeeC-CceEEEEccCCeEEEEEeechhh
Q 019384 153 SLVGNRLVVATAGRH---------VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLSEA 222 (342)
Q Consensus 153 s~~~~~~~~~s~d~~---------v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~s~~~~~~i~~~d~~~~ 222 (342)
+..|+.+++|+..+. |++||+|+.+...- ..+......+.++|. ...+++++..|... +.|..+-
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P---I~~~~~P~flrf~Psl~t~~~V~S~sGq~q--~vd~~~l 298 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP---IQFPYGPQFLRFHPSLTTRLAVTSQSGQFQ--FVDTATL 298 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhhhccCC---cccccCchhhhhcccccceEEEEeccccee--ecccccc
Confidence 999999999988754 78999998754211 112222345566765 23466777777653 4664332
Q ss_pred hhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEe
Q 019384 223 SQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWD 271 (342)
Q Consensus 223 ~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd 271 (342)
..+..-....|.. ..-+.++.++++++.+|.|..+|.|.+|.
T Consensus 299 sNP~~~~~~v~p~-------~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPN-------GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCccceeEEccC-------CCcceeEEecCCCceEEEecccCcEeeec
Confidence 2221111111111 01278899999999999999999999996
No 307
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0011 Score=58.95 Aligned_cols=80 Identities=14% Similarity=0.292 Sum_probs=64.3
Q ss_pred cCCCCCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe-CCCC-eEEEecCCcEEEEEec
Q 019384 13 ELGNPPSDGISNLRFSNHSD-HLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSS-GFSASADHTVRRLVFS 89 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~-~~~~-~~s~s~D~~i~~w~~~ 89 (342)
.+...+...|..++|||..+ +|..++.+.+|+|.|+.+......+.-...+++|+|. ++.. ++.|-..|.|.++|++
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 35567778999999999876 7888999999999999887766655444899999997 4444 4566788899999998
Q ss_pred cCc
Q 019384 90 HGK 92 (342)
Q Consensus 90 ~~~ 92 (342)
..+
T Consensus 267 ~~~ 269 (463)
T KOG1645|consen 267 QPE 269 (463)
T ss_pred CCC
Confidence 765
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.0058 Score=56.61 Aligned_cols=258 Identities=14% Similarity=0.136 Sum_probs=133.6
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecC-----------CcEEEEEecc
Q 019384 23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASAD-----------HTVRRLVFSH 90 (342)
Q Consensus 23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D-----------~~i~~w~~~~ 90 (342)
+-+.|||.|.+|+|=-.-| |.+|--.+-....-+.|. .|.-+.|+|... ++|-|.. ..+++||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 4699999999999977766 789976543333334454 466778887554 4444421 4589999999
Q ss_pred Ccee-eccc--CCccee-EEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccC--CeEEEEE
Q 019384 91 GKED-ILGK--HDAPVR-CIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVG--NRLVVAT 163 (342)
Q Consensus 91 ~~~~-~~~~--h~~~V~-~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~--~~~~~~s 163 (342)
+... .+.- ....++ -..|+.|++++|.-.. .+|.|++..+- ..+.... ....+-.|++++ +.|+.-+
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf-----~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF-----MLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce-----eeecccccCCccccCcccCCCcceEEEEc
Confidence 8732 2221 223334 3589999999887655 67888885431 1121111 011233344443 3333222
Q ss_pred cC-----CeEEEEeCCCCCCcccccccccceeeE--EEEEeeCCceEEEEcc-------CCe-EEEEEeechhhhhcccc
Q 019384 164 AG-----RHVNVYDLRNMSQPEQRRESSLKYQTR--CVRCYPNGTGYALSSV-------EGR-VAMEFFDLSEASQAKKY 228 (342)
Q Consensus 164 ~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~s~-------~~~-~~i~~~d~~~~~~~~~~ 228 (342)
.. -++-|..+-+.+....+ .+ .++. .+-|-.+|.++++--. .+. -++.++-+++...
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~---nl-fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---- 437 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTK---NL-FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---- 437 (698)
T ss_pred ccccCCcceEEEEecCccceeeec---cc-eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC----
Confidence 11 12333333222111000 00 1111 1223344554432211 000 0112222211100
Q ss_pred eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec---CCCeEEEEeCCC-c---eeeeccCCCCcceEEEEECCCCCEEE
Q 019384 229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG---CDGFVNVWDGNN-K---KRLYQYSKYPTSIAALSFSRDGRLLA 301 (342)
Q Consensus 229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs---~Dg~I~iWd~~~-~---~~~~~~~~~~~~V~~v~~spdg~~la 301 (342)
. ....++..+|-..+|-|.|..+++-+ .-.++.+|-+++ . +++..+.. ...+.+-|||.|++++
T Consensus 438 --p-----ve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvv 508 (698)
T KOG2314|consen 438 --P-----VEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVV 508 (698)
T ss_pred --C-----ceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEE
Confidence 0 00111123577789999999876543 234799998773 2 23334432 4578999999999999
Q ss_pred EEEe
Q 019384 302 VASS 305 (342)
Q Consensus 302 s~s~ 305 (342)
++.-
T Consensus 509 va~l 512 (698)
T KOG2314|consen 509 VAAL 512 (698)
T ss_pred EEEe
Confidence 8763
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.91 E-value=7.5e-05 Score=62.42 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=57.0
Q ss_pred CCCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEECCCcee--eeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEEecc
Q 019384 16 NPPSDGISNLRFSNHS-DHLLVSSWDKSVRLYDASANVL--RGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLVFSH 90 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~~~--~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~~~ 90 (342)
....++|.+++-.|.. ++++.|+.||.+-|||...... .....|+.+++-+.|+| ...+++++.||.+..||-.+
T Consensus 176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 176 KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3445679999988865 4566788899999999876532 22347999999999974 45689999999998887554
No 310
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.90 E-value=0.0012 Score=48.50 Aligned_cols=100 Identities=20% Similarity=0.194 Sum_probs=70.3
Q ss_pred eEEEEEcC---CC-CeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecc
Q 019384 22 ISNLRFSN---HS-DHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILG 97 (342)
Q Consensus 22 V~~l~fs~---~~-~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~ 97 (342)
|+++++.. || +.|+.||.|..||||+-. .++.+....+.|..++-...++++.+..+|+|-+|+-..+..+.-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKS 79 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKS 79 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeecc
Confidence 67777765 33 579999999999999875 4666777788898888877778888889999888865443333223
Q ss_pred cCCcceeEEEEeC---CC-CEEEEeeCCCcEE
Q 019384 98 KHDAPVRCIEYSY---AA-GQVITGSWDKSLK 125 (342)
Q Consensus 98 ~h~~~V~~~~~~~---~~-~~l~sgs~D~~I~ 125 (342)
+| .+.++++.. || ..|++|-.+|.|-
T Consensus 80 K~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 80 KN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33 366665543 23 2588888888764
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0014 Score=62.98 Aligned_cols=142 Identities=12% Similarity=0.109 Sum_probs=88.8
Q ss_pred CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCC------CCeEEEecCCcEEEEEe---ccCceeecccCC
Q 019384 30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD------SSGFSASADHTVRRLVF---SHGKEDILGKHD 100 (342)
Q Consensus 30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~------~~~~s~s~D~~i~~w~~---~~~~~~~~~~h~ 100 (342)
+|.+++|||.||+|.|--+-+....+....+-++.+++++|+ ++.++|+.-| +.+..- .......+..-.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 499999999999999999887777777778889999999876 4567888777 433321 111122344556
Q ss_pred cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeee--eecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384 101 APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV--GTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN 175 (342)
Q Consensus 101 ~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~--~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~ 175 (342)
++|.++.|. |++||=++ |-.|+++|+.+......... .......-...+.+.++..++.+-+.+|++..++.
T Consensus 161 G~I~~i~W~--g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 161 GPIHSIKWR--GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred cceEEEEec--CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEec
Confidence 889999985 66676655 45589999864321100000 00000011123445444344455556889888873
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=4.5e-05 Score=66.14 Aligned_cols=115 Identities=9% Similarity=0.094 Sum_probs=86.8
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-----eeeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEEeccC
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-----VLRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLVFSHG 91 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-----~~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~~~~ 91 (342)
+..|.++.|...++++..|+..|.|-..|+..+ ....-+-|...|+++.... +..+++.+.+|+|++||....
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 568999999998999999999999999998643 2334456999999988753 444567789999999998765
Q ss_pred ce----eecccCCcceeEEE--EeCCCCEEEEeeCCCcEEEEcCCCCC
Q 019384 92 KE----DILGKHDAPVRCIE--YSYAAGQVITGSWDKSLKCWDPRGAS 133 (342)
Q Consensus 92 ~~----~~~~~h~~~V~~~~--~~~~~~~l~sgs~D~~I~iWd~~~~~ 133 (342)
+. ..+.+|...-.-+- ..+....+++++.|-.-|||.++.+.
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 43 34677754332222 23455688999999999999987654
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.81 E-value=0.0021 Score=54.81 Aligned_cols=185 Identities=16% Similarity=0.105 Sum_probs=106.2
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeec--ccC---Ccc
Q 019384 28 SNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDIL--GKH---DAP 102 (342)
Q Consensus 28 s~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~--~~h---~~~ 102 (342)
.+++.++++++.++.+..||..+++.+..+...+.+.......++.++.++.|+.+..+|..+++..-- ... ...
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 336677888899999999999998876665545544333344566777888888898899888774311 111 011
Q ss_pred eeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC--C-------cEEEEeccCCeEEEEEcCCe-EEEEe
Q 019384 103 VRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP--E-------RVYSLSLVGNRLVVATAGRH-VNVYD 172 (342)
Q Consensus 103 V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~--~-------~v~~~s~~~~~~~~~s~d~~-v~iwd 172 (342)
........+++.++.+..++.|..+|++++... ......... . ....+...++.+..++.++. +.+ |
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d 189 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL--WKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-D 189 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEE--EEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-E
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEE--EEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-E
Confidence 122222223778888888999999998765331 111111101 0 01233334456777777775 555 9
Q ss_pred CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh
Q 019384 173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA 222 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~ 222 (342)
+.+++..... .... ... .....+..+++.+.++.+ ..+|.++.
T Consensus 190 ~~tg~~~w~~---~~~~-~~~-~~~~~~~~l~~~~~~~~l--~~~d~~tG 232 (238)
T PF13360_consen 190 LATGEKLWSK---PISG-IYS-LPSVDGGTLYVTSSDGRL--YALDLKTG 232 (238)
T ss_dssp TTTTEEEEEE---CSS--ECE-CEECCCTEEEEEETTTEE--EEEETTTT
T ss_pred CCCCCEEEEe---cCCC-ccC-CceeeCCEEEEEeCCCEE--EEEECCCC
Confidence 9887522111 1111 111 134566667777666654 45887543
No 314
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.79 E-value=0.021 Score=49.98 Aligned_cols=237 Identities=12% Similarity=0.078 Sum_probs=125.5
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceee------------
Q 019384 28 SNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDI------------ 95 (342)
Q Consensus 28 s~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~------------ 95 (342)
...++.|+.|..+| +.+++...........+...|..+...+.-.++..=.|+.+.++++..-....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccc
Confidence 34678899999998 89999843333333334455888888776666655567999999876543211
Q ss_pred ---cccCCcceeEEE--EeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384 96 ---LGKHDAPVRCIE--YSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV 170 (342)
Q Consensus 96 ---~~~h~~~V~~~~--~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i 170 (342)
.......+..++ -...+...+.....++|.+|..................+..+..+.+.++.++.+..+ ...+
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~-~f~~ 161 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK-GFYL 161 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC-ceEE
Confidence 011223344444 1224445566667779999876542111102233334445566777777887777654 5778
Q ss_pred EeCCCCCCccccccccc---------ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384 171 YDLRNMSQPEQRRESSL---------KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD 241 (342)
Q Consensus 171 wd~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~ 241 (342)
.|+.++........... ......+...+++. ++.+..+.- .+.|.... ..+...+.- .
T Consensus 162 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~Ll~~~~~g---~fv~~~G~-~~r~~~i~W------~-- 228 (275)
T PF00780_consen 162 IDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNE-FLLCYDNIG---VFVNKNGE-PSRKSTIQW------S-- 228 (275)
T ss_pred EecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCce-EEEEecceE---EEEcCCCC-cCcccEEEc------C--
Confidence 88886533211000000 00112222223333 333322211 23444221 111111111 0
Q ss_pred eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCC
Q 019384 242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKY 284 (342)
Q Consensus 242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~ 284 (342)
....++++. ..+|+.-.. +.|.||++.+++.++.+...
T Consensus 229 --~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 229 --SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred --CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 124456664 345655554 56999999999888776543
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.75 E-value=0.0011 Score=61.91 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=79.9
Q ss_pred CCCeEEEEEcC-CCCeEEE----EeCCCcEE----EEECCCceeee----eeecCCceEEEEEeCC-CCeEEEecCCcEE
Q 019384 19 SDGISNLRFSN-HSDHLLV----SSWDKSVR----LYDASANVLRG----EFMHGGPVLDCCFHDD-SSGFSASADHTVR 84 (342)
Q Consensus 19 ~~~V~~l~fs~-~~~~l~s----~s~Dgti~----vwd~~~~~~~~----~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~ 84 (342)
+....++.||- +.+.+.| .+.+|.+. +|++...++.. .+-....|.+++++++ ..++.|+.||+|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 34557888886 4445543 44555544 66665554322 3356788999999865 4567999999999
Q ss_pred EEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384 85 RLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 85 ~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~ 130 (342)
+||...+.. .+..+.-..+.++|+|+|..|+.|+.-|.|.+||+.
T Consensus 285 LyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 285 LYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 999866532 233445567889999999999999999999999975
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.72 E-value=0.031 Score=56.62 Aligned_cols=228 Identities=11% Similarity=0.108 Sum_probs=124.2
Q ss_pred CceEEEEEe-CCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceee
Q 019384 61 GPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTL 139 (342)
Q Consensus 61 ~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~ 139 (342)
+.|.++.|. ...+++.+..+|+|.+-|.++........-...|.+.+|+||.+.++-.+.++++-+=+.. -.......
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchhccc
Confidence 578999997 5556778889999988888777655566667889999999999998877777776553211 00000000
Q ss_pred eeec-CCCCcEEEEeccCC-eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE---ccCCeEEE
Q 019384 140 VGTY-PQPERVYSLSLVGN-RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS---SVEGRVAM 214 (342)
Q Consensus 140 ~~~~-~~~~~v~~~s~~~~-~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---s~~~~~~i 214 (342)
+... ......+.+-+..+ +-+-|+.+ .....+......... ......+-+.+.|--||+++++. ...+..++
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~g-r~~~~~~~~~ek~~~--~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEG-RQAARQKIEKEKALE--QIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccccceecccccceeeecchh-hhccccccccccccc--chhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 1000 00011112222111 11111111 111111110000000 00111234567788889888774 23444567
Q ss_pred EEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe---cCCCeEEEEeCCCce---eeeccCCCCcce
Q 019384 215 EFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG---GCDGFVNVWDGNNKK---RLYQYSKYPTSI 288 (342)
Q Consensus 215 ~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg---s~Dg~I~iWd~~~~~---~~~~~~~~~~~V 288 (342)
++||-... ..... . ...+-=.+++|=|.|..+++- ..|+.|.++..+... ....+..-..+|
T Consensus 225 rV~drEg~--Lns~s-----e-----~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 225 RVYDREGA--LNSTS-----E-----PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred EEecccch--hhccc-----C-----cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence 88987521 10000 0 000112468899999888874 356689999865422 122233333459
Q ss_pred EEEEECCCCCEEEEEE
Q 019384 289 AALSFSRDGRLLAVAS 304 (342)
Q Consensus 289 ~~v~~spdg~~las~s 304 (342)
..++|+.++..||+--
T Consensus 293 e~L~Wns~sdiLAv~~ 308 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVT 308 (1265)
T ss_pred heeeecCCCCceeeee
Confidence 9999999999999843
No 317
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.71 E-value=0.02 Score=53.13 Aligned_cols=230 Identities=14% Similarity=0.033 Sum_probs=118.7
Q ss_pred CCCeEEEEeCCCcEEEEECCCceeeeeeecCC-----------ceEEEEEeCCCCeEEEecCCcEEEEEeccCceeeccc
Q 019384 30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGG-----------PVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGK 98 (342)
Q Consensus 30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~-----------~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~ 98 (342)
.+.++..++.+|.+.-+|..+++.+......+ .+.+-....++.++.++.++.+.-+|.++++..--..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 35677888889999999998887554432211 1111111235567788888999899988877431111
Q ss_pred CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCc----EEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER----VYSLSLVGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 99 h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~----v~~~s~~~~~~~~~s~d~~v~iwd~~ 174 (342)
-...+.+--.. .++.++.++.++.|..+|.+++... ..... ..+.. ..+-...++.++.++.++.+..+|..
T Consensus 148 ~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~--W~~~~-~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 148 VAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVK--WTVNL-DVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEe--eeecC-CCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 11222221111 2456777888899999998765431 11110 00000 00001123467778888888888888
Q ss_pred CCCCccccccc-ccc-ee---eEEEEEee--CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384 175 NMSQPEQRRES-SLK-YQ---TRCVRCYP--NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247 (342)
Q Consensus 175 ~~~~~~~~~~~-~~~-~~---~~~v~~~~--~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~ 247 (342)
+++..-+.... ... .. ...+...| .+..+++++.++.+ ..+|..+.+. .|.... + ...
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l--~ald~~tG~~--~W~~~~------~-----~~~ 288 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL--VALDLRSGQI--VWKREY------G-----SVN 288 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE--EEEECCCCCE--EEeecC------C-----Ccc
Confidence 76542211100 000 00 00000111 23345555555543 4466643322 221110 0 011
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEeCCCceeeec
Q 019384 248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQ 280 (342)
Q Consensus 248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 280 (342)
.+.. .+..|..++.||.+...|.++++.+..
T Consensus 289 ~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 289 DFAV--DGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CcEE--ECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 1111 356777788899999999998876654
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.70 E-value=0.0016 Score=60.71 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=72.4
Q ss_pred CCceEEEEEe--CCCCeE----EEecCCcE----EEEEeccCcee----ecccCCcceeEEEEeCCCCEEEEeeCCCcEE
Q 019384 60 GGPVLDCCFH--DDSSGF----SASADHTV----RRLVFSHGKED----ILGKHDAPVRCIEYSYAAGQVITGSWDKSLK 125 (342)
Q Consensus 60 ~~~V~~~~~~--~~~~~~----s~s~D~~i----~~w~~~~~~~~----~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~ 125 (342)
+....++.|+ .+.++. +.+.++.+ .+|+....+.. +-......|.|++++|+.+.|+.|..||+|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 4455778886 333443 34455542 45555544322 1234667899999999999999999999999
Q ss_pred EEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384 126 CWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN 175 (342)
Q Consensus 126 iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~ 175 (342)
+||...+... .....-.....++.+++..+++|+.-|.+.+||+.-
T Consensus 285 LyD~~~~~t~----~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 285 LYDTTRGVTL----LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEcCCCeee----eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9997643221 111111222334444566888999999999999864
No 319
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.017 Score=55.86 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=71.3
Q ss_pred CCCCCCeEEEEEcCCC------------CeEEEEeCCCcEEEEECCCceeeeee-ecCCceEEEEEe---CCC--CeEEE
Q 019384 16 NPPSDGISNLRFSNHS------------DHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFH---DDS--SGFSA 77 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~------------~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~V~~~~~~---~~~--~~~s~ 77 (342)
+.|...|+.|+|.|.. -+||++.-.|.|.|||...+..+..+ .|.+++..++|. ++. .++.-
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI 131 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI 131 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe
Confidence 4677899999999742 13556666699999998776544444 467889999985 333 23455
Q ss_pred ecCCcEEEEEeccCceee--cccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEc
Q 019384 78 SADHTVRRLVFSHGKEDI--LGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWD 128 (342)
Q Consensus 78 s~D~~i~~w~~~~~~~~~--~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd 128 (342)
....++-+|+..+++..- -..| ....|+.+.| |...|.--+..|.+-+-+
T Consensus 132 h~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 132 HGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred cCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEe
Confidence 677789999888876321 1122 3445677777 334444444455554443
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.66 E-value=0.019 Score=50.98 Aligned_cols=261 Identities=15% Similarity=0.097 Sum_probs=135.8
Q ss_pred CCCCccCCCCCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEECCCceeeeeeecCC--------ceEEEEEe
Q 019384 8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSS----------WDKSVRLYDASANVLRGEFMHGG--------PVLDCCFH 69 (342)
Q Consensus 8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s----------~Dgti~vwd~~~~~~~~~~~h~~--------~V~~~~~~ 69 (342)
+++++-|+.-..+-.-.+..||+++.+.++. ..-.|.+||..+-....++.--. ......++
T Consensus 24 ~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls 103 (342)
T PF06433_consen 24 ADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALS 103 (342)
T ss_dssp TTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-
T ss_pred CCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEc
Confidence 4566777776667677788999999887643 34578999998755444332111 11234555
Q ss_pred CCCCeE---EEecCCcEEEEEeccCceeecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-
Q 019384 70 DDSSGF---SASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP- 144 (342)
Q Consensus 70 ~~~~~~---s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~- 144 (342)
.+++.+ -.+-...|.+.|+..++...... . --|.-..| ....|.+-+.||++....+....+..+.....+.
T Consensus 104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~--PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~ 180 (342)
T PF06433_consen 104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-T--PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP 180 (342)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-G--TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred cCCcEEEEEccCCCCeEEEEECCCCceeeeec-C--CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence 555432 34555566777776665321000 0 01222223 2356888888998877776543332211111111
Q ss_pred CCCcEE---EEeccCCeEEEEEcCCeEEEEeCCCCCCccccccccc----------ceeeEEEEEeeCCceEEEEc----
Q 019384 145 QPERVY---SLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSL----------KYQTRCVRCYPNGTGYALSS---- 207 (342)
Q Consensus 145 ~~~~v~---~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~s---- 207 (342)
....++ ..+..++.++..+..|.|.-.|+..........-... +.--.-+++++..+.+.+..
T Consensus 181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 111121 1233445677788888888888865432111000000 00001234454333333222
Q ss_pred ----cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEE-EecCCCeEEEEeCCCceeeecc
Q 019384 208 ----VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFA-TGGCDGFVNVWDGNNKKRLYQY 281 (342)
Q Consensus 208 ----~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~-sgs~Dg~I~iWd~~~~~~~~~~ 281 (342)
.+..-.||.+|..+.+...++.+. .++.+|+.+.+.+ .|. ....++.+.+||..+++.+.++
T Consensus 261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~------------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLKTHKRVARIPLE------------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp TT-TTS-EEEEEEEETTTTEEEEEEEEE------------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred CCCccCCceEEEEEECCCCeEEEEEeCC------------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 233446777887654444443332 2578899988765 554 4567899999999999988776
Q ss_pred CC
Q 019384 282 SK 283 (342)
Q Consensus 282 ~~ 283 (342)
.+
T Consensus 329 ~~ 330 (342)
T PF06433_consen 329 EQ 330 (342)
T ss_dssp --
T ss_pred hc
Confidence 54
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=9.1e-05 Score=71.66 Aligned_cols=197 Identities=15% Similarity=0.240 Sum_probs=118.2
Q ss_pred eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-C-eEEEE
Q 019384 94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-R-HVNVY 171 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-~-~v~iw 171 (342)
+.+..|+...+|++|+-+.+.|+.|+..|.|++++..++.-. .....|....+.+.-+.++...++.++- . ..-+|
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--ccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 356678889999999998899999999999999998765321 1122233332333334456655544433 3 46789
Q ss_pred eCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384 172 DLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251 (342)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~ 251 (342)
++...-.+...+. .-.++.|+..-+.-+++...... .+||+.+......|. .. .....+.=+++.|
T Consensus 1173 ~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a--~~YDvqT~~~l~tyl-t~------~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDA--LLYDVQTCSPLQTYL-TD------TVTSSYSNNLAHF 1238 (1516)
T ss_pred ccccccCcccccc-----ccceeehhhhHHHHHhcccccce--EEEecccCcHHHHhc-Cc------chhhhhhcccccc
Confidence 9876322221111 12456666654444555554443 469987654433321 11 0111223367889
Q ss_pred cCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe-ccccCCC
Q 019384 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS-YTFEEGD 312 (342)
Q Consensus 252 sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~-~~~~~~~ 312 (342)
+|+...+. +|| -+||++..+.++.|...... -.=.|.|.|.-++.-+. |++++=+
T Consensus 1239 sP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSEIwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSEIWDMRTFK 1294 (1516)
T ss_pred CCCcceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeechhhhhHHHH
Confidence 99887665 344 37999988777776655422 23468999998877765 5555433
No 322
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.63 E-value=0.033 Score=47.90 Aligned_cols=178 Identities=15% Similarity=0.151 Sum_probs=96.8
Q ss_pred eEEEEEc-CCCCeEEEEeCCCcEEEEECCCceeeeeee------cCCceEEEEEeCCCCeEEEecC---------CcEEE
Q 019384 22 ISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFM------HGGPVLDCCFHDDSSGFSASAD---------HTVRR 85 (342)
Q Consensus 22 V~~l~fs-~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~------h~~~V~~~~~~~~~~~~s~s~D---------~~i~~ 85 (342)
...+++. ++ ..|+.+..++ +.++|..+++...... .....+++++.+++.++.+... +.+..
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6778888 56 4555555554 5556988876544332 2235678999888877654432 22444
Q ss_pred EEeccCceeecccCCcceeEEEEeCCCCEEE-EeeCCCcEEEEcCCCCCC--cceeeeeecCCCC-cE--EEEeccCCeE
Q 019384 86 LVFSHGKEDILGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKCWDPRGASG--QERTLVGTYPQPE-RV--YSLSLVGNRL 159 (342)
Q Consensus 86 w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~~~~--~~~~~~~~~~~~~-~v--~~~s~~~~~~ 159 (342)
++.. ++...+...-...+.++|+|+++.|+ +-+..+.|..+|+..... .....+....... .. ++++.+++..
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW 198 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence 4444 33333333345578999999998765 667788899888754332 1112222222221 23 3344456666
Q ss_pred EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEE-eeCCceEEE
Q 019384 160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRC-YPNGTGYAL 205 (342)
Q Consensus 160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~ 205 (342)
++....+.|.++|.. ++... ....+.. .+++++| -++.+.+.+
T Consensus 199 va~~~~~~I~~~~p~-G~~~~-~i~~p~~-~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 199 VADWGGGRIVVFDPD-GKLLR-EIELPVP-RPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEETTTEEEEEETT-SCEEE-EEE-SSS-SEEEEEEESTTSSEEEE
T ss_pred EEEcCCCEEEEECCC-ccEEE-EEcCCCC-CEEEEEEECCCCCEEEE
Confidence 666677899999987 43221 1112222 4566665 345444433
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.57 E-value=0.0025 Score=62.31 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=112.0
Q ss_pred CCeEEEEeCCCcEEEEECCCceeeeeeecC-CceEEEEEeCCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEE
Q 019384 31 SDHLLVSSWDKSVRLYDASANVLRGEFMHG-GPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEY 108 (342)
Q Consensus 31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~-~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~ 108 (342)
+..++-|+--..+..+|+.+.+......-+ +.|.=++. .+..+++|...|+|.+-|..+-+ ...+..|++.|..++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 445666777777888888776544433222 23433333 34455688889999999988766 4578899999977765
Q ss_pred eCCCCEEEEeeCC---------CcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEEEEEcCCeEEEEeCCCCCC
Q 019384 109 SYAAGQVITGSWD---------KSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYDLRNMSQ 178 (342)
Q Consensus 109 ~~~~~~l~sgs~D---------~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd~~~~~~ 178 (342)
.|+.|+||+.. ..|++||+|+-.... .+.....+ ....|-+ -...+++++..|...+-|..+...
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 57888888754 578999998532211 11111111 1222222 235788899999999998332222
Q ss_pred c-cccc-ccccceeeEEEEEeeCCceEEEEccCCeEEEEEee
Q 019384 179 P-EQRR-ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD 218 (342)
Q Consensus 179 ~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d 218 (342)
+ .... .......+..+.++++++.++.+..++.+.+ |.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~--wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL--WA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEee--ec
Confidence 2 1111 1122223567778999999999999998766 54
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.51 E-value=0.057 Score=47.36 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=41.8
Q ss_pred eeEEEEcCCCCeEEEecC-CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEE
Q 019384 246 VNAIAFHPIYGTFATGGC-DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVA 303 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~-Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~ 303 (342)
+-+|++++++.+++..+- -+.+.+||..+++.+.... ...+..++-.+++ ++++.
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSS 274 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeC
Confidence 678999999988866654 5689999999998876543 3467888888888 44443
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.012 Score=52.48 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=61.4
Q ss_pred ecCCceEEEEEeCCCC--eEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCC
Q 019384 58 MHGGPVLDCCFHDDSS--GFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGAS 133 (342)
Q Consensus 58 ~h~~~V~~~~~~~~~~--~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~ 133 (342)
.|...|.+++|+|... +..++.+.+|++.|+++... ..+..| .++++|+|..+. ..|+.|-..|.|.++|++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 3566789999986544 56899999999999998764 344555 889999999866 578899999999999998765
Q ss_pred C
Q 019384 134 G 134 (342)
Q Consensus 134 ~ 134 (342)
+
T Consensus 270 ~ 270 (463)
T KOG1645|consen 270 G 270 (463)
T ss_pred c
Confidence 4
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.0057 Score=59.46 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=77.5
Q ss_pred CCCeEE-EEEcCCCCeEEEEeC----CCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEecCCcEEEEEeccCc
Q 019384 19 SDGISN-LRFSNHSDHLLVSSW----DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGK 92 (342)
Q Consensus 19 ~~~V~~-l~fs~~~~~l~s~s~----Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~ 92 (342)
+++|.. .+|.|...++|.++. .|.|.||--. |+...-..-.=.+.++||+|...++ .+-.-|.+.+|...+.+
T Consensus 14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfadt-GEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADT-GEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccccccccCCCCceeEEEEecCCCCceEEEEecC-CCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 445544 678998899888764 3888888543 3322211111123568998876654 55556778888776655
Q ss_pred e-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384 93 E-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 93 ~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~ 130 (342)
. .+...|..+|.-+.|+++|+.++|+..=|.+.+|...
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3 3456799999999999999999999998999999654
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0023 Score=61.61 Aligned_cols=145 Identities=18% Similarity=0.143 Sum_probs=99.1
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCC
Q 019384 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHD 100 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~ 100 (342)
.+++.+++ +..|+-|.-+|.|++++.+... ...+.|+.. -..+..+++||.||++.+-.+.+.+..+.....
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~ 112 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK 112 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence 44444444 4678889999999999987653 444445443 113445679999999988888777765544556
Q ss_pred cceeEEEEeCC-----CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384 101 APVRCIEYSYA-----AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN 175 (342)
Q Consensus 101 ~~V~~~~~~~~-----~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~ 175 (342)
.++.+++++|+ .+++++|+.-| +-++..+--... ..+..+...+.+.++++.++.|+-++.+| |++||...
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--cceeeecCccceEEEEecCcEEEEecCCC-cEEEeccc
Confidence 78999999997 45799999888 777653311111 11122345667889999999877666554 99999876
Q ss_pred CC
Q 019384 176 MS 177 (342)
Q Consensus 176 ~~ 177 (342)
.+
T Consensus 189 ~~ 190 (846)
T KOG2066|consen 189 RQ 190 (846)
T ss_pred cc
Confidence 53
No 328
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.43 E-value=0.00027 Score=40.41 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=28.6
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEE
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYD 47 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd 47 (342)
.|...|.+++|.+++..+++++.|+.+++||
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5677899999999999999999999999996
No 329
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.37 E-value=0.00043 Score=39.50 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=29.7
Q ss_pred cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEc
Q 019384 96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128 (342)
Q Consensus 96 ~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd 128 (342)
+..|...|.++.|.+++..+++++.|+.+++||
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456788999999999889999999999999996
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.36 E-value=7.4e-05 Score=69.82 Aligned_cols=168 Identities=15% Similarity=0.249 Sum_probs=104.1
Q ss_pred CCCCCccCCCCCCCCeEEEEEcC-CCCeEEEEe----CCCcEEEEECCCce--eee---ee-ecCCceEEEEEeCCCCe-
Q 019384 7 PPTSGRELGNPPSDGISNLRFSN-HSDHLLVSS----WDKSVRLYDASANV--LRG---EF-MHGGPVLDCCFHDDSSG- 74 (342)
Q Consensus 7 ~~~~~~~~~~~~~~~V~~l~fs~-~~~~l~s~s----~Dgti~vwd~~~~~--~~~---~~-~h~~~V~~~~~~~~~~~- 74 (342)
|-+.+.|..+++....++++|++ |.+.||.|- .|..+.|||+.+.. ... +. +-......+||..+..+
T Consensus 90 ~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klv 169 (783)
T KOG1008|consen 90 PHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLV 169 (783)
T ss_pred cccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchh
Confidence 44556777788888899999998 667777663 45789999987641 110 11 12344567888754444
Q ss_pred EEEecCCcEEEEEeccCceeecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEc-CCCCCCcceeeeeec-CCCCcEEE
Q 019384 75 FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWD-PRGASGQERTLVGTY-PQPERVYS 151 (342)
Q Consensus 75 ~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd-~~~~~~~~~~~~~~~-~~~~~v~~ 151 (342)
++|.....+.++|+++.....-.--+..|..+...| ..+++++-+ |+.|.+|| .++-+...+..+... ..+..+..
T Consensus 170 laGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~ 248 (783)
T KOG1008|consen 170 LAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFA 248 (783)
T ss_pred hcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceee
Confidence 577777789999887654333223344566677777 667777655 99999999 333222212212111 12234666
Q ss_pred EeccCC---eEEEEEcC-CeEEEEeCCC
Q 019384 152 LSLVGN---RLVVATAG-RHVNVYDLRN 175 (342)
Q Consensus 152 ~s~~~~---~~~~~s~d-~~v~iwd~~~ 175 (342)
+.+.+. .+++.+.| ++|+++|+..
T Consensus 249 ~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 249 LAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred EEeccCCcchhhhhccCcceEEEecccc
Confidence 666542 45555555 6899999864
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.30 E-value=0.17 Score=48.30 Aligned_cols=49 Identities=20% Similarity=0.563 Sum_probs=33.7
Q ss_pred CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce--EEEEECCCCC-EEEEE
Q 019384 254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI--AALSFSRDGR-LLAVA 303 (342)
Q Consensus 254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V--~~v~~spdg~-~las~ 303 (342)
.+..|+.++.||.|+.+|.++++.+.+++- .+.+ .-+.|..+|+ |+++.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCCEEEEEEE
Confidence 357788899999999999999998876542 2222 3344556777 44443
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.26 E-value=0.00029 Score=66.00 Aligned_cols=199 Identities=14% Similarity=0.147 Sum_probs=124.8
Q ss_pred CCCeEEEEEcCCC--CeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEEeC-CCCeEEEecC-----CcEEEEE
Q 019384 19 SDGISNLRFSNHS--DHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHD-DSSGFSASAD-----HTVRRLV 87 (342)
Q Consensus 19 ~~~V~~l~fs~~~--~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~-~~~~~s~s~D-----~~i~~w~ 87 (342)
...+.+++++-+. ..++.|..+|.|-+-...... ...+..|....++++|.+ |...+.+|.| ..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4567777776544 468889999999988775321 222335667788999974 4455666644 4688999
Q ss_pred eccCc----e-eecc-cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEE
Q 019384 88 FSHGK----E-DILG-KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLV 160 (342)
Q Consensus 88 ~~~~~----~-~~~~-~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~ 160 (342)
+.++- + ..+. +-.....+++|-.+.+.+++|...+.++++|+|...... ..+.. +. ..-..+++ .+++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnT-k~-vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNT-KY-VQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhh-hh-cccceecCCCCCcee
Confidence 98762 1 1222 233456688888888889999999999999998321111 11111 00 11123444 566665
Q ss_pred EEEcCCeEEEEe-CCCCCCccccc---ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechh
Q 019384 161 VATAGRHVNVYD-LRNMSQPEQRR---ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSE 221 (342)
Q Consensus 161 ~~s~d~~v~iwd-~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~ 221 (342)
+ ..|+.|-+|| .++.+.+.+.. ......+...+++.|....+...-......|+.+|...
T Consensus 213 s-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 213 S-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 4 4589999999 66655443222 12223357788999987776655555566778888753
No 333
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.0048 Score=59.38 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=78.3
Q ss_pred eEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCeEEEecCC----------cEEEEEeccCceeecc----
Q 019384 33 HLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFSASADH----------TVRRLVFSHGKEDILG---- 97 (342)
Q Consensus 33 ~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~~s~s~D~----------~i~~w~~~~~~~~~~~---- 97 (342)
++|.|-..|||-|+|+.++.+.. +-.|...|.++.|....++++.+... .+.+-|+.++..+.++
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 56788899999999998876543 44699999999998777777666442 3556677777644443
Q ss_pred cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384 98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132 (342)
Q Consensus 98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~ 132 (342)
....+|+.+..+.-+.+|+..-.|.-+.+||+++.
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 34578999999999999999999999999998653
No 334
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.15 E-value=0.034 Score=40.90 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=43.3
Q ss_pred eeEEEEeC---CC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEEEEEcCCeEEEEeC
Q 019384 103 VRCIEYSY---AA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYDL 173 (342)
Q Consensus 103 V~~~~~~~---~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd~ 173 (342)
|+++++.. +| +.|+.||.|..||+|+-+. .+.....+..+..+.. .+..++.+.+.|+|.+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 45555443 33 5799999999999998431 2223333455666665 3568999999999988875
No 335
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.14 E-value=0.092 Score=46.10 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=35.2
Q ss_pred EEEEcCCCCeEEEEe-----CCCcEEEEECCC-ceeeeee-ecCCceEEEEEeCCCCeE
Q 019384 24 NLRFSNHSDHLLVSS-----WDKSVRLYDASA-NVLRGEF-MHGGPVLDCCFHDDSSGF 75 (342)
Q Consensus 24 ~l~fs~~~~~l~s~s-----~Dgti~vwd~~~-~~~~~~~-~h~~~V~~~~~~~~~~~~ 75 (342)
.-.||+||++|.|.= ..|.|-|||... -..+.++ .|.=....+.+.+++..+
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tL 113 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETL 113 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEE
Confidence 468999999998854 349999999983 3344443 343344567777777433
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.0011 Score=64.30 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=51.8
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
+.+++|||..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|||||..|.++..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~ 121 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDN 121 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCC
Confidence 467999998778899999999999998876655555679999999999999999999865
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.13 E-value=0.039 Score=54.80 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=79.2
Q ss_pred ecCCcEEEEEeccCce-eecccCCc-ceeEEEEeC-----CCCEEEEeeCCCcEEEEcCCCCCCc-ceeeeeecCCCCcE
Q 019384 78 SADHTVRRLVFSHGKE-DILGKHDA-PVRCIEYSY-----AAGQVITGSWDKSLKCWDPRGASGQ-ERTLVGTYPQPERV 149 (342)
Q Consensus 78 s~D~~i~~w~~~~~~~-~~~~~h~~-~V~~~~~~~-----~~~~l~sgs~D~~I~iWd~~~~~~~-~~~~~~~~~~~~~v 149 (342)
.....+..+|++.++. ..+.-|.. +|..++-.. .....+.|-.+..+..||+|-.... .......+......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 3456788889988874 33444443 365554321 1335677888999999999853221 11111222233334
Q ss_pred EEEeccC-CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc
Q 019384 150 YSLSLVG-NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV 208 (342)
Q Consensus 150 ~~~s~~~-~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 208 (342)
.+++..+ ..|++|+.+|.||+||- .+.. .....+.++.++..|.++.||++++..+.
T Consensus 581 s~~aTt~~G~iavgs~~G~IRLyd~-~g~~-AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSNKGDIRLYDR-LGKR-AKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred eEEEecCCceEEEEeCCCcEEeecc-cchh-hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 4555544 47999999999999994 3222 22223456678899999999998765554
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.005 Score=58.60 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=98.2
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee--cCCceEEEEEeCCCCeE-EEecCCcEEEEEeccCc
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM--HGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGK 92 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~--h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~ 92 (342)
..+...|.--+++..+.+|+-|+.-|.+.+|+-.++..+.... -.+.+..++.++...++ .|+..+.|.++-+....
T Consensus 30 ~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 30 GFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred ccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 4667788888999999999999999999999987765443322 33445556667666665 55566667666554432
Q ss_pred e--eec-----ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeee-eecCCCCcEEEEeccCCeEEEEEc
Q 019384 93 E--DIL-----GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV-GTYPQPERVYSLSLVGNRLVVATA 164 (342)
Q Consensus 93 ~--~~~-----~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~-~~~~~~~~v~~~s~~~~~~~~~s~ 164 (342)
. ..+ ..|...|++++|++++.+|++|..-|+|-+-.+.+. ....... .-......|+.++.....+++++.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl 188 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYLQSYLLVSTL 188 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecccceehHhhh
Confidence 1 111 237889999999999999999999999987766541 1100000 011123456777776555555554
Q ss_pred CC
Q 019384 165 GR 166 (342)
Q Consensus 165 d~ 166 (342)
-+
T Consensus 189 ~r 190 (726)
T KOG3621|consen 189 TR 190 (726)
T ss_pred hh
Confidence 43
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.05 E-value=0.0051 Score=58.56 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=93.9
Q ss_pred cEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc
Q 019384 148 RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK 227 (342)
Q Consensus 148 ~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~ 227 (342)
...+++...+.++.|+.-|.+.+|+-..+.......+. ....+.....+++...++.++..+.|.+...+.+ ......
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~~ 114 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDLD 114 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCcce
Confidence 34567777889999999999999987665433322221 1123344456788888889999988766333321 111222
Q ss_pred ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc----eeeeccCCCCcceEEEEECCCCCEEEEE
Q 019384 228 YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK----KRLYQYSKYPTSIAALSFSRDGRLLAVA 303 (342)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~----~~~~~~~~~~~~V~~v~~spdg~~las~ 303 (342)
+.-.+|.. |...|+|++|++++..|.+|..-|.|.+-.+... ...+.+....+.|-.+.+ -++.+|++.
T Consensus 115 ~~t~~d~~------~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~-~q~~LLVSt 187 (726)
T KOG3621|consen 115 YVTPCDKS------HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY-LQSYLLVST 187 (726)
T ss_pred eecccccc------CCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec-ccceehHhh
Confidence 22223221 2236999999999999999999999999877661 112333445567777777 455555554
Q ss_pred E
Q 019384 304 S 304 (342)
Q Consensus 304 s 304 (342)
.
T Consensus 188 l 188 (726)
T KOG3621|consen 188 L 188 (726)
T ss_pred h
Confidence 4
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.02 E-value=0.037 Score=53.14 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=80.4
Q ss_pred cCCeEEEEEcCCeEEEEeCCC----CCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcc---
Q 019384 155 VGNRLVVATAGRHVNVYDLRN----MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAK--- 226 (342)
Q Consensus 155 ~~~~~~~~s~d~~v~iwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~--- 226 (342)
+++.... .+++|.++|.++ ... .....+.+...-.+.++|||+++++++. +.++ .++|+.......
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~--v~~yIPVGKsPHGV~vSPDGkylyVanklS~tV--SVIDv~k~k~~~~~~ 360 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSA--LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTV--TVIDVRKLDDLFDGK 360 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcc--eEEEEECCCCccceEECCCCCEEEEeCCCCCcE--EEEEChhhhhhhhcc
Confidence 4554443 367899999987 211 1111233344567889999998877764 5555 458875432110
Q ss_pred ---cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC----------ceeeeccC-----CCCcce
Q 019384 227 ---KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN----------KKRLYQYS-----KYPTSI 288 (342)
Q Consensus 227 ---~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~----------~~~~~~~~-----~~~~~V 288 (342)
+-.+.+..+. +. +| .-.+|.++|..+.|--.|..|-.|++.. ...+..+. +|....
T Consensus 361 ~~~~~~vvaevev--Gl---GP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~ 434 (635)
T PRK02888 361 IKPRDAVVAEPEL--GL---GP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHAS 434 (635)
T ss_pred CCccceEEEeecc--CC---Cc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeec
Confidence 0111111111 11 12 2358999998888888999999999875 22233332 343322
Q ss_pred EEEEECCCCCEEEEEEe
Q 019384 289 AALSFSRDGRLLAVASS 305 (342)
Q Consensus 289 ~~v~~spdg~~las~s~ 305 (342)
..=.-.|||+||++...
T Consensus 435 ~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 435 MGETKEADGKWLVSLNK 451 (635)
T ss_pred CCCcCCCCCCEEEEccc
Confidence 33344799999998774
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.84 E-value=0.02 Score=53.35 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=74.2
Q ss_pred eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384 167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP 245 (342)
Q Consensus 167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~ 245 (342)
.+.++|+.++...... ........-+|+|+|+.++.. ..++...|+++|+......+.....+
T Consensus 219 ~i~~~~l~~g~~~~i~---~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g------------- 282 (425)
T COG0823 219 RIYYLDLNTGKRPVIL---NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG------------- 282 (425)
T ss_pred eEEEEeccCCccceee---ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCc-------------
Confidence 5888899876543221 122223345689999887655 56788889999986554222111111
Q ss_pred ee-EEEEcCCCCeEEEecC-CC--eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 246 VN-AIAFHPIYGTFATGGC-DG--FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 246 v~-~v~~sp~~~~l~sgs~-Dg--~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
++ .=.|+|||+.++-.+. .| .|.+.+.+.... +.++.....-..-.|||||++|+..+..
T Consensus 283 i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 283 INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 11 1258999998765543 44 466667765443 2222222222388899999999988843
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.075 Score=49.54 Aligned_cols=194 Identities=12% Similarity=0.132 Sum_probs=110.2
Q ss_pred ecccCCcceeEEEEeCCCCEEEEe-eCC---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc-CC--e
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITG-SWD---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA-GR--H 167 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sg-s~D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~-d~--~ 167 (342)
.+..-...+..-+|+|+++.++-. -.. ..|.++|++++... .+...........+++++..++.++. |+ .
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~---~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP---VILNFNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc---eeeccCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 333334556667888888765432 122 34888898765432 22333444455678888887765544 34 4
Q ss_pred EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384 168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV 246 (342)
Q Consensus 168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v 246 (342)
|-+.|+....... .... ......=+++|+|+.++..+ ..+.-.|++++...... .+.....- .=
T Consensus 264 iy~~dl~~~~~~~--Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~-----------~~ 328 (425)
T COG0823 264 IYLMDLDGKNLPR--LTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG-----------GN 328 (425)
T ss_pred EEEEcCCCCccee--cccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC-----------CC
Confidence 7777887654222 1111 11112345889999876654 55666777777654322 22211110 01
Q ss_pred eEEEEcCCCCeEEEecC-CCe--EEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 247 NAIAFHPIYGTFATGGC-DGF--VNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 247 ~~v~~sp~~~~l~sgs~-Dg~--I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
..-.++|||.+++..+. +|. |.+.|..++..++.+. .......-+|+|+|+.|.-.+...
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 13468999998877654 344 6666666554333332 333456778899999887666544
No 343
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.71 E-value=0.45 Score=44.02 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=73.8
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEECCCce----------e---------------e-------------e------e
Q 019384 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANV----------L---------------R-------------G------E 56 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~----------~---------------~-------------~------~ 56 (342)
.|++++|.++..-|+.|-..|.|-||.....+ + + . .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999999852110 0 0 0 0
Q ss_pred eecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCcee---eccc------CCcceeEEEEeC-----CC---CEEEEee
Q 019384 57 FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKED---ILGK------HDAPVRCIEYSY-----AA---GQVITGS 119 (342)
Q Consensus 57 ~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~---~~~~------h~~~V~~~~~~~-----~~---~~l~sgs 119 (342)
....++|++++.++-+-++.|..+|.+.+.|++..... .+.. ....|+++.|.. |+ -.++.|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 01357899999988777788889999999999766532 1222 335688888873 22 2568889
Q ss_pred CCCcEEEEcCC
Q 019384 120 WDKSLKCWDPR 130 (342)
Q Consensus 120 ~D~~I~iWd~~ 130 (342)
..|.+.+|.+-
T Consensus 163 n~G~v~~fkIl 173 (395)
T PF08596_consen 163 NSGNVLTFKIL 173 (395)
T ss_dssp TTSEEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999999764
No 344
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.039 Score=51.19 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=89.9
Q ss_pred CCCeEE-EEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC--------CeEEEecCCcEEEEEeccCceee---cc
Q 019384 30 HSDHLL-VSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS--------SGFSASADHTVRRLVFSHGKEDI---LG 97 (342)
Q Consensus 30 ~~~~l~-s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~--------~~~s~s~D~~i~~w~~~~~~~~~---~~ 97 (342)
+.+.|+ ++..-..+.=-|+..|+++.+......|.-+.+.|+. +.+.|-.|..+..||.+-..... ..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 334443 4444455666677888888877656667777776543 33667788899999986543211 12
Q ss_pred cCC----cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384 98 KHD----APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL 173 (342)
Q Consensus 98 ~h~----~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~ 173 (342)
+|. ....|.+-.-+ .+|+.||.+|.||+||. .+. ...+.+.....+...+.++.+|+.|+ |+.+..+.+.|.
T Consensus 424 ~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~-~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGR-RAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhh-hhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEEE
Confidence 232 34566766644 58999999999999995 211 11223344444555667777887654 777778888886
Q ss_pred CC
Q 019384 174 RN 175 (342)
Q Consensus 174 ~~ 175 (342)
.-
T Consensus 500 ~~ 501 (644)
T KOG2395|consen 500 LI 501 (644)
T ss_pred ec
Confidence 53
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.67 E-value=0.061 Score=53.46 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=84.0
Q ss_pred eCCCcEEEEECCCceeeeeeecCC--ceEEEEEe------CCCCeEEEecCCcEEEEEeccCceeec------ccCCcce
Q 019384 38 SWDKSVRLYDASANVLRGEFMHGG--PVLDCCFH------DDSSGFSASADHTVRRLVFSHGKEDIL------GKHDAPV 103 (342)
Q Consensus 38 s~Dgti~vwd~~~~~~~~~~~h~~--~V~~~~~~------~~~~~~s~s~D~~i~~w~~~~~~~~~~------~~h~~~V 103 (342)
.....+.-.|+..|++..+..-.. +|..++-. .+.+.+.|-.+..+..||.+-....+. .......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 455778888888888877764332 34544432 133568888899999999876431111 1234557
Q ss_pred eEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384 104 RCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 104 ~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~ 174 (342)
.|++-+.+| +||.||.+|.||+||.- + ....+.+.....+...+.++.+|..++ |+.+..+.|++..
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g-~~AKT~lp~lG~pI~~iDvt~DGkwil-aTc~tyLlLi~t~ 647 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRL-G-KRAKTALPGLGDPIIGIDVTADGKWIL-ATCKTYLLLIDTL 647 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeeccc-c-hhhhhcCCCCCCCeeEEEecCCCcEEE-EeecceEEEEEEe
Confidence 788877554 89999999999999942 2 112223333344444455566676544 6777788888863
No 346
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0097 Score=56.06 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=64.9
Q ss_pred eeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee-EEEEcCCCCeEEEecCCCeEE
Q 019384 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN-AIAFHPIYGTFATGGCDGFVN 268 (342)
Q Consensus 190 ~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~-~v~~sp~~~~l~sgs~Dg~I~ 268 (342)
.+..+.|.|.-..+|.+..+|.+.++-.+ ..+.|.+..|.. ++. +++|.|||+.||.|-.||+|+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-----~qRlwtip~p~~---------~v~~sL~W~~DGkllaVg~kdG~I~ 87 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-----WQRLWTIPIPGE---------NVTASLCWRPDGKLLAVGFKDGTIR 87 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-----cceeEeccCCCC---------ccceeeeecCCCCEEEEEecCCeEE
Confidence 35566788888888888888877653322 123344443322 344 899999999999999999999
Q ss_pred EEeCCCceeeeccC-CCCcceEEEEECC
Q 019384 269 VWDGNNKKRLYQYS-KYPTSIAALSFSR 295 (342)
Q Consensus 269 iWd~~~~~~~~~~~-~~~~~V~~v~~sp 295 (342)
+-|++++..+..+. -....|.++-|+|
T Consensus 88 L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 88 LHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEccCCCceeccccccccchheeeccc
Confidence 99999988776632 1234677777763
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.55 E-value=0.67 Score=43.19 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=36.5
Q ss_pred eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCC-CcceEEEEECCCCC
Q 019384 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKY-PTSIAALSFSRDGR 298 (342)
Q Consensus 245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~V~~v~~spdg~ 298 (342)
++..++.||++++||.-..+|++.+.+.+-.+.+..+... ......|.|.-+..
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 6899999999999999999999999976544444333221 22344555544433
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.54 E-value=0.36 Score=43.38 Aligned_cols=150 Identities=12% Similarity=0.142 Sum_probs=91.0
Q ss_pred CCeEEEEEcCC----CCeEEEEeC----------CCcEEEEECCCc-----e--eeeeeecCCceEEEEEeCCCCeEEEe
Q 019384 20 DGISNLRFSNH----SDHLLVSSW----------DKSVRLYDASAN-----V--LRGEFMHGGPVLDCCFHDDSSGFSAS 78 (342)
Q Consensus 20 ~~V~~l~fs~~----~~~l~s~s~----------Dgti~vwd~~~~-----~--~~~~~~h~~~V~~~~~~~~~~~~s~s 78 (342)
..+..+.|..+ ..+|+.|.. .|.|.++++... + +.......++|++++-..+ . +.++
T Consensus 27 ~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~-~-lv~~ 104 (321)
T PF03178_consen 27 TSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNG-R-LVVA 104 (321)
T ss_dssp EEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETT-E-EEEE
T ss_pred EEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCC-E-EEEe
Confidence 34455666654 456665532 299999999773 3 3344567899999987733 3 5555
Q ss_pred cCCcEEEEEeccCc-eeecccC--CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-
Q 019384 79 ADHTVRRLVFSHGK-EDILGKH--DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL- 154 (342)
Q Consensus 79 ~D~~i~~w~~~~~~-~~~~~~h--~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~- 154 (342)
..+.+.+|++...+ ......+ ...+.++... +++|+.|..-+.+.++..+. .......+.....+..+.++.+
T Consensus 105 ~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~-~~~~l~~va~d~~~~~v~~~~~l 181 (321)
T PF03178_consen 105 VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE-ENNKLILVARDYQPRWVTAAEFL 181 (321)
T ss_dssp ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET-TTE-EEEEEEESS-BEEEEEEEE
T ss_pred ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc-cCCEEEEEEecCCCccEEEEEEe
Confidence 56899999998877 3322222 2356666655 56899998888887763322 1111222333233444555444
Q ss_pred -cCCeEEEEEcCCeEEEEeCC
Q 019384 155 -VGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 155 -~~~~~~~~s~d~~v~iwd~~ 174 (342)
+++.++.+..+|.+.++...
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-
T ss_pred cCCcEEEEEcCCCeEEEEEEC
Confidence 44688888888999988775
No 349
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.52 E-value=0.0074 Score=37.13 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=28.5
Q ss_pred eeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee
Q 019384 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR 277 (342)
Q Consensus 245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~ 277 (342)
.|.+++|+|....||.|..||.|.|+.+ +++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 5889999999999999999999999988 4443
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.46 E-value=0.49 Score=40.67 Aligned_cols=200 Identities=9% Similarity=0.052 Sum_probs=91.1
Q ss_pred cccCCcceeEEEEeCCCCEEEE-eeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEEEc-CCeEEEEe
Q 019384 96 LGKHDAPVRCIEYSYAAGQVIT-GSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVATA-GRHVNVYD 172 (342)
Q Consensus 96 ~~~h~~~V~~~~~~~~~~~l~s-gs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s~-d~~v~iwd 172 (342)
+.+-...+..++|+|+.+.|++ ....+.|...+++ +.......+.. ....-.+...+ +.++.... ++++.+++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g---~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG---FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC---CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 3444456899999998765544 5555677666754 22211111221 22233444433 45555443 57788887
Q ss_pred CCCCCCcc-----cccccc----cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh-hhcccceeeeEEecCCCCce
Q 019384 173 LRNMSQPE-----QRRESS----LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA-SQAKKYAFKCHRKSEAGRDI 242 (342)
Q Consensus 173 ~~~~~~~~-----~~~~~~----~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~-~~~~~~~~~~h~~~~~~~~~ 242 (342)
+....... +..... .+.-...+++.+.++.++++-...-..++-++.-.. ..........+.. ....
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~ 169 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD---DKLF 169 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH----HT--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc---ccce
Confidence 74321110 111111 112257889999877777665444444433332000 0000000000110 0011
Q ss_pred eeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCceeee--ccCC-------CCcceEEEEECCCCCEEEEE
Q 019384 243 VYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNKKRLY--QYSK-------YPTSIAALSFSRDGRLLAVA 303 (342)
Q Consensus 243 ~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~~~~~--~~~~-------~~~~V~~v~~spdg~~las~ 303 (342)
+..+++++|+|.. .+++....+..|..+|.+ ++.+. .+.. .-..--.|+|.+||++.+++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 2247889999975 567788889999999954 44433 2222 11356899999999987765
No 351
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.38 E-value=0.014 Score=35.94 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN 51 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~ 51 (342)
.+.|..++|+|..++||.+..||.|.|++++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 456999999999999999999999999999543
No 352
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.10 E-value=1.3 Score=42.98 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=47.9
Q ss_pred cceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCC------cce-eeeeecCC--CCcEEEEeccCCeEEEEEcCCeEEE
Q 019384 101 APVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASG------QER-TLVGTYPQ--PERVYSLSLVGNRLVVATAGRHVNV 170 (342)
Q Consensus 101 ~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~------~~~-~~~~~~~~--~~~v~~~s~~~~~~~~~s~d~~v~i 170 (342)
.....++++|||+++ +++..+.++.+.|+++... ..+ ......+. ......|+-.++...+...|..|..
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEE
Confidence 445679999999987 5667789999999875221 000 11111111 1123455555666777888999999
Q ss_pred EeCCC
Q 019384 171 YDLRN 175 (342)
Q Consensus 171 wd~~~ 175 (342)
||+..
T Consensus 401 wn~~~ 405 (635)
T PRK02888 401 WNIEA 405 (635)
T ss_pred EehHH
Confidence 99865
No 353
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.38 Score=44.97 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCc--------------eE------EEEEeCCCCe--EE
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGP--------------VL------DCCFHDDSSG--FS 76 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~--------------V~------~~~~~~~~~~--~s 76 (342)
.++|.++++..-++.+++.++.. +.|..-.. ++.+.|... .. .+....+..+ .+
T Consensus 276 ~~~i~sl~~~a~~NS~Lvv~~~n-s~V~Rn~~---iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~ 351 (644)
T KOG2395|consen 276 EGGIGSLDEGALDNSFLVVGYGN-SYVTRNNR---IGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMD 351 (644)
T ss_pred hcccchhhhcccCCceEEecccc-eEEEecce---eeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeC
Confidence 46788899987666666665443 66655322 122222111 11 1111122222 24
Q ss_pred EecCCcEEEEEeccCcee-ecccCCcceeEEEEeCCCC-------EEEEeeCCCcEEEEcCCCCCCcceeeeee--cCCC
Q 019384 77 ASADHTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAG-------QVITGSWDKSLKCWDPRGASGQERTLVGT--YPQP 146 (342)
Q Consensus 77 ~s~D~~i~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~-------~l~sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~ 146 (342)
+.....+..+|++.++.. ...-|.+ |.-+.+.|+.+ .-+.|-.|..|.-||+|-.........+. +...
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k 430 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTK 430 (644)
T ss_pred CCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccc
Confidence 555566778888887743 2333333 77777777543 23557788999999998432211111111 1111
Q ss_pred CcEEEEecc-CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc
Q 019384 147 ERVYSLSLV-GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS 207 (342)
Q Consensus 147 ~~v~~~s~~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s 207 (342)
...-++... ...|++|+.+|.||+||- .+.+. ....+.+...+..|....+|+.++..+
T Consensus 431 ~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~A-KTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 431 NNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRA-KTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred cccceeeecCCceEEEeecCCcEEeehh-hhhhh-hhcccccCCceeeEEeeccCcEEEEec
Confidence 222233333 347999999999999996 22221 122345556677788888888765444
No 354
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.95 E-value=0.025 Score=46.87 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=56.7
Q ss_pred CCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEe--CCC-CeEEEecCCcEEEEEeccCc-eeecccCC-ccee
Q 019384 31 SDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFH--DDS-SGFSASADHTVRRLVFSHGK-EDILGKHD-APVR 104 (342)
Q Consensus 31 ~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~--~~~-~~~s~s~D~~i~~w~~~~~~-~~~~~~h~-~~V~ 104 (342)
+..|+.|..||.|.+|+.... .....+.-......+.++ .++ ...+++.|+.|+.|...-.+ .....+|+ ..+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 356788999999999998631 111111111222334443 232 34688999999999876655 33455666 3444
Q ss_pred EEEEeCCCCEEEEe--eCCCcEEEEcCC
Q 019384 105 CIEYSYAAGQVITG--SWDKSLKCWDPR 130 (342)
Q Consensus 105 ~~~~~~~~~~l~sg--s~D~~I~iWd~~ 130 (342)
.+..+..+..|... |.|..++.|+++
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 44444444445444 555555555543
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.046 Score=51.68 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=57.6
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceE-EEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEE
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA-ALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRS 324 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~-~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~ 324 (342)
+--+.|+|.-..+|.+.++|.|-+.... .+++.++.-+...+. +++|.|||+.||+|-.++ .|.++.
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG-----------~I~L~D 90 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDG-----------TIRLHD 90 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCC-----------eEEEEE
Confidence 4557899998999999999999999877 677888877777777 999999999999997765 377776
Q ss_pred cc
Q 019384 325 VN 326 (342)
Q Consensus 325 ~~ 326 (342)
++
T Consensus 91 ve 92 (665)
T KOG4640|consen 91 VE 92 (665)
T ss_pred cc
Confidence 66
No 356
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.74 E-value=1.5 Score=39.88 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=39.9
Q ss_pred CeEEEEEcCCCCeEEEE-eCCCc--EEEEECCCceeeeeeecCC-ceEEEEEeCCCC-eEEEecCCcEEEEEeccCceee
Q 019384 21 GISNLRFSNHSDHLLVS-SWDKS--VRLYDASANVLRGEFMHGG-PVLDCCFHDDSS-GFSASADHTVRRLVFSHGKEDI 95 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~-s~Dgt--i~vwd~~~~~~~~~~~h~~-~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~ 95 (342)
..+.=+|.+||++|+-+ ..||. +.+-|+.+++...+-...+ .......++++. ++-.-....++..++++.++..
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 44455788999776644 44654 5555677777655443332 233444555444 3445556678888888887543
Q ss_pred -cccCCcceeEEEE
Q 019384 96 -LGKHDAPVRCIEY 108 (342)
Q Consensus 96 -~~~h~~~V~~~~~ 108 (342)
+.-...-+-...|
T Consensus 117 vy~~p~~~~g~gt~ 130 (386)
T PF14583_consen 117 VYEVPDDWKGYGTW 130 (386)
T ss_dssp EEE--TTEEEEEEE
T ss_pred EEECCcccccccce
Confidence 3333333433444
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.62 E-value=0.78 Score=43.09 Aligned_cols=156 Identities=17% Similarity=0.113 Sum_probs=72.0
Q ss_pred CCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee----------------eeecCCce-------
Q 019384 7 PPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG----------------EFMHGGPV------- 63 (342)
Q Consensus 7 ~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~----------------~~~h~~~V------- 63 (342)
+|..-++++. .......++++|+|+.++. +.||.-.|+.....+-.. ...-...|
T Consensus 21 ~~l~~k~lg~-~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 21 LPLSVKELGS-CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp B----EEEEE--SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTE
T ss_pred eeEEeccCCC-CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCc
Confidence 3444455552 2334688999999988876 677788888743211000 00000000
Q ss_pred ----EEEE-------EeCCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384 64 ----LDCC-------FHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132 (342)
Q Consensus 64 ----~~~~-------~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~ 132 (342)
..+. ... +.++....++.|.+||+++++...-... .+|..+.|++++++++-.+.| +|.+++....
T Consensus 99 ~~~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 99 NEVVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDV-SAVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp E-TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred cccceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEec-CCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 0001 011 5556555666899999998874322222 248999999999988777654 5666653211
Q ss_pred -------CCc--ceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384 133 -------SGQ--ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV 170 (342)
Q Consensus 133 -------~~~--~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i 170 (342)
.+. ....+. +...+|.+..|.++.++-.+.. +++.
T Consensus 176 ~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d~fiYtT~~-~lkY 219 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIH--EISERIKSGCWVEDCFIYTTSN-HLKY 219 (443)
T ss_dssp HHHHBTTTB-GGGEEEEE--EE-S--SEEEEETTEEEEE-TT-EEEE
T ss_pred hcccccccCchhceEEEE--EecceeEEEEEEcCEEEEEcCC-eEEE
Confidence 111 111121 1134555667777766666655 6665
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.57 E-value=1.4 Score=38.32 Aligned_cols=144 Identities=13% Similarity=0.122 Sum_probs=78.7
Q ss_pred CCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCccee-e---------
Q 019384 70 DDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT-L--------- 139 (342)
Q Consensus 70 ~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~-~--------- 139 (342)
.+..++.|+.+| +.+++...........+...|..+...++-+.++.-+ |+.+.++++..-...... .
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 345677887777 7777773322222222333499999998877766554 599999998643221100 0
Q ss_pred eeecCCCCcEEEEe----ccCCeEEEEEcCCeEEEEeCCCCCCc--ccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384 140 VGTYPQPERVYSLS----LVGNRLVVATAGRHVNVYDLRNMSQP--EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA 213 (342)
Q Consensus 140 ~~~~~~~~~v~~~s----~~~~~~~~~s~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~ 213 (342)
.........+..++ ..+...+.+...++|.+|.+...... ....+..++..+..+.+. ++.++++..++-
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f-- 159 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGF-- 159 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCce--
Confidence 00111122333444 12345566677779999888663211 122233344456666666 456777765543
Q ss_pred EEEeech
Q 019384 214 MEFFDLS 220 (342)
Q Consensus 214 i~~~d~~ 220 (342)
.+.|+.
T Consensus 160 -~~idl~ 165 (275)
T PF00780_consen 160 -YLIDLN 165 (275)
T ss_pred -EEEecC
Confidence 345654
No 359
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.56 E-value=0.042 Score=45.61 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=54.7
Q ss_pred eEEEEeCCCcEEEEECCCce--eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc--eeecccCCccee-EEE
Q 019384 33 HLLVSSWDKSVRLYDASANV--LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK--EDILGKHDAPVR-CIE 107 (342)
Q Consensus 33 ~l~s~s~Dgti~vwd~~~~~--~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~--~~~~~~h~~~V~-~~~ 107 (342)
.|...|.||+|+=+++...+ .+.+..|... ..+ .--+..++.++.++.+.+|.+..-. ......-...|. .+.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v-~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRV-VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc-eee-cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 34556778888877775432 2333333322 111 1134567889999999998876322 111111112222 233
Q ss_pred EeCCCCEEEEeeCCCcEEEEcCC
Q 019384 108 YSYAAGQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 108 ~~~~~~~l~sgs~D~~I~iWd~~ 130 (342)
-..++.+..++++|+.||.|...
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~ 132 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIK 132 (238)
T ss_pred cccccceeEEeccCCceeeeccc
Confidence 33345577899999999999975
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.37 E-value=1.9 Score=38.43 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=60.8
Q ss_pred eeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhh-hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC-e
Q 019384 190 QTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEAS-QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG-F 266 (342)
Q Consensus 190 ~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~-~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg-~ 266 (342)
..+.++|+|+++.+..+.. .+.+ +-|+..... .........+.....+ ..-.++...+|.+.+++-.+| .
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i--~r~~~d~~~g~~~~~~~~~~~~~~~G-----~PDG~~vDadG~lw~~a~~~g~~ 236 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRI--HRYDLDPATGPIGGRRGFVDFDEEPG-----LPDGMAVDADGNLWVAAVWGGGR 236 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeE--EEEecCcccCccCCcceEEEccCCCC-----CCCceEEeCCCCEEEecccCCce
Confidence 3578999999987766643 3444 334432100 0000000000000011 123455666676655555554 8
Q ss_pred EEEEeCCCceeeeccCCCCcceEEEEE-CCCCCEEEEEEe
Q 019384 267 VNVWDGNNKKRLYQYSKYPTSIAALSF-SRDGRLLAVASS 305 (342)
Q Consensus 267 I~iWd~~~~~~~~~~~~~~~~V~~v~~-spdg~~las~s~ 305 (342)
|.+|+.+ ++.+..+.-....+.+++| .|+.+.|-+.+.
T Consensus 237 v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 237 VVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 9999988 7777776655577899999 777776555554
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.20 E-value=1.2 Score=41.97 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=66.9
Q ss_pred CCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccC------------ceeeccc
Q 019384 31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHG------------KEDILGK 98 (342)
Q Consensus 31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~------------~~~~~~~ 98 (342)
|.+|+..+.+ .|.+||+.++++...+... +|..+.|++++..+....+..+.++..... ....+..
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E 194 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHE 194 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEE
Confidence 7777766555 8999999998887776655 389999999888877666778877776544 1122222
Q ss_pred CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384 99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL 173 (342)
Q Consensus 99 h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~ 173 (342)
-...|.+..|.-+ -.++|... .|+.+- .+.. ..+.+...+..+.......+.+.....++.+..+.+
T Consensus 195 ~~~~IkSg~W~~d-~fiYtT~~--~lkYl~--~Ge~---~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 195 ISERIKSGCWVED-CFIYTTSN--HLKYLV--NGET---GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp E-S--SEEEEETT-EEEEE-TT--EEEEEE--TTEE---EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred ecceeEEEEEEcC-EEEEEcCC--eEEEEE--cCCc---ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 2467778888754 34455433 666642 1111 123333333334444433355665566666665554
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.19 E-value=2.2 Score=38.07 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=75.5
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee---ec---CCceEEEEEeCCCCeEEEecC-----C-----cE
Q 019384 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF---MH---GGPVLDCCFHDDSSGFSASAD-----H-----TV 83 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~---~h---~~~V~~~~~~~~~~~~s~s~D-----~-----~i 83 (342)
+.+.++..-..+..|+++ +.-+.+++...+..+... .. ....+.+...+++.+..+... . .-
T Consensus 66 ~~~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 66 GGFSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred CCcccceeecCCCeEEEE--ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 334444433344455544 334666676544442221 11 123456666666776554443 1 11
Q ss_pred EEEEec-cCc-eeecccCCcceeEEEEeCCCCEEEEe-eCCCcEEEEcCCCCCC---cceeeeeecCCCCc--EEEEecc
Q 019384 84 RRLVFS-HGK-EDILGKHDAPVRCIEYSYAAGQVITG-SWDKSLKCWDPRGASG---QERTLVGTYPQPER--VYSLSLV 155 (342)
Q Consensus 84 ~~w~~~-~~~-~~~~~~h~~~V~~~~~~~~~~~l~sg-s~D~~I~iWd~~~~~~---~~~~~~~~~~~~~~--v~~~s~~ 155 (342)
.+|-++ .+. ...+..|-..-+.++|+||++.|+-. +..+.|..+++..... .....+........ -.+++.+
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad 223 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD 223 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence 344444 222 44555555666789999999877655 4447787777642111 11111111111111 2234444
Q ss_pred CCeEEEEEcC-CeEEEEeCC
Q 019384 156 GNRLVVATAG-RHVNVYDLR 174 (342)
Q Consensus 156 ~~~~~~~s~d-~~v~iwd~~ 174 (342)
++..+++-.+ +.|..|+..
T Consensus 224 G~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCEEEecccCCceEEEECCC
Confidence 5544333333 388888876
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.10 E-value=0.9 Score=38.76 Aligned_cols=127 Identities=18% Similarity=0.136 Sum_probs=73.3
Q ss_pred CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEec
Q 019384 157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS 236 (342)
Q Consensus 157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~ 236 (342)
..++.++-.+.+.-.|..+++..- +.-+..++.+-+.- -|+.++++...+.+ ++.+..+..+...+.....-+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~W---e~ilg~RiE~sa~v-vgdfVV~GCy~g~l--Yfl~~~tGs~~w~f~~~~~vk- 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIW---EAILGVRIECSAIV-VGDFVVLGCYSGGL--YFLCVKTGSQIWNFVILETVK- 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEe---ehhhCceeeeeeEE-ECCEEEEEEccCcE--EEEEecchhheeeeeehhhhc-
Confidence 355666777777777776664321 22233445544433 34567888777754 566665554433332211110
Q ss_pred CCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECC-CCCEE
Q 019384 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR-DGRLL 300 (342)
Q Consensus 237 ~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp-dg~~l 300 (342)
+ .....+++..+..|+.|++.+.-|..+..++.+.+--.+.-.+-+..| |+.+.
T Consensus 97 ---------~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly 151 (354)
T KOG4649|consen 97 ---------V-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLY 151 (354)
T ss_pred ---------c-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEE
Confidence 1 123467899999999999999999998888876542222223344455 55533
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.066 Score=53.75 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=46.0
Q ss_pred eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce---EEEEECCCCCEEEEEE
Q 019384 242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI---AALSFSRDGRLLAVAS 304 (342)
Q Consensus 242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V---~~v~~spdg~~las~s 304 (342)
..++|.+++|+.+|.+++.|-.+|.|.+||...++.++.+..|..++ .-+-+..++..+.++.
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSD 194 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEcc
Confidence 34689999999999999999999999999999888777665544433 3333344445455443
No 365
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.86 E-value=2.2 Score=36.49 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=71.6
Q ss_pred CCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce-eecccCCcceeE-EEE
Q 019384 31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRC-IEY 108 (342)
Q Consensus 31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~-~~~ 108 (342)
..+++-||..+.++--|.+++++..+..-.+.|.+-+..-++.++.|+..+.+...+..++.. -.+.. -+.|.+ ...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~ 101 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQC 101 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEE
Confidence 467778999999999999998877765556666554443455678999999998888888752 12211 112221 223
Q ss_pred eCCCCEEEEeeCCCcEEEEcCCCC
Q 019384 109 SYAAGQVITGSWDKSLKCWDPRGA 132 (342)
Q Consensus 109 ~~~~~~l~sgs~D~~I~iWd~~~~ 132 (342)
.++++.|..|+.|++....|.++.
T Consensus 102 d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred cCCCceEEEecCCCcEEEeccccc
Confidence 457889999999999999998753
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.77 E-value=3.5 Score=38.36 Aligned_cols=196 Identities=16% Similarity=0.181 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCeEEEE-eCC----CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecCC-----------cEE
Q 019384 22 ISNLRFSNHSDHLLVS-SWD----KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADH-----------TVR 84 (342)
Q Consensus 22 V~~l~fs~~~~~l~s~-s~D----gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~-----------~i~ 84 (342)
+...++||++++||-+ +.. -+++++|+.+++.............+.|.++++. +....+. .+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3367899999998733 333 5699999998876543212112223889877554 4443332 256
Q ss_pred EEEeccCce---eecccCCcc--eeEEEEeCCCCEEEE-eeCC---CcEEEEcCCCC---CCcceeeeeecCCCCcEEEE
Q 019384 85 RLVFSHGKE---DILGKHDAP--VRCIEYSYAAGQVIT-GSWD---KSLKCWDPRGA---SGQERTLVGTYPQPERVYSL 152 (342)
Q Consensus 85 ~w~~~~~~~---~~~~~h~~~--V~~~~~~~~~~~l~s-gs~D---~~I~iWd~~~~---~~~~~~~~~~~~~~~~v~~~ 152 (342)
+|.+.+... .++...... ...+..++|++.|+. .... ..+.+-|+... .... ..+.. ........+
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~-~~l~~-~~~~~~~~v 283 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP-KLLSP-REDGVEYYV 283 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE-EEEEE-SSSS-EEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc-EEEeC-CCCceEEEE
Confidence 666666542 344443333 567888999988653 2222 34667777653 1111 22211 111222334
Q ss_pred eccCCeEEEEEcC----CeEEEEeCCCCCCcccc-cccccc--eeeEEEEEeeCCceEEEEccCCeEEEEEeech
Q 019384 153 SLVGNRLVVATAG----RHVNVYDLRNMSQPEQR-RESSLK--YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLS 220 (342)
Q Consensus 153 s~~~~~~~~~s~d----~~v~iwd~~~~~~~~~~-~~~~~~--~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~ 220 (342)
...++.+...+.+ +.|...++.+....... ...... ..+..+... .+..++....++.-.|.+++..
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECC
Confidence 4446655554444 35666777665321111 111111 122222222 2233445567777788888885
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.69 E-value=3.1 Score=37.32 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=77.2
Q ss_pred CcEEEEEeccC-----ceeec--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe
Q 019384 81 HTVRRLVFSHG-----KEDIL--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS 153 (342)
Q Consensus 81 ~~i~~w~~~~~-----~~~~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s 153 (342)
|.+.++.+... +...+ ....++|++++-. ++ +|+.+ ..+.|.+|++..... ............+.++.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~--l~~~~~~~~~~~i~sl~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKT--LLKKAFYDSPFYITSLS 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSS--EEEEEEE-BSSSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCccc--chhhheecceEEEEEEe
Confidence 67888888774 22222 3456889998766 33 44443 347999999875431 12222333344677888
Q ss_pred ccCCeEEEEEcCCeEEEEeCCCCCC-cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEee
Q 019384 154 LVGNRLVVATAGRHVNVYDLRNMSQ-PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD 218 (342)
Q Consensus 154 ~~~~~~~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d 218 (342)
..++.++++..-+.+.++.++.... .........+..+.++.+.+++..++++..++.+.+.-++
T Consensus 137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 8888999998888888775443211 1111111123345666677566678888888887665554
No 368
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.64 E-value=0.12 Score=30.95 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.1
Q ss_pred eeeEEEEcCCCC---eEEEecCCCeEEEEeCCC
Q 019384 245 PVNAIAFHPIYG---TFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 245 ~v~~v~~sp~~~---~l~sgs~Dg~I~iWd~~~ 274 (342)
+|.+|.|+|.+. +|+-.-.-|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999998644 788887888999999985
No 369
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.53 E-value=2.8 Score=36.10 Aligned_cols=110 Identities=9% Similarity=0.120 Sum_probs=64.6
Q ss_pred CCeEEEEEcCCCCeEEE-EeCCCcEEEEECCCceeeeeee--cCCceEEEEEeCCCCeEEEec-CCcEEEEEeccCc---
Q 019384 20 DGISNLRFSNHSDHLLV-SSWDKSVRLYDASANVLRGEFM--HGGPVLDCCFHDDSSGFSASA-DHTVRRLVFSHGK--- 92 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s-~s~Dgti~vwd~~~~~~~~~~~--h~~~V~~~~~~~~~~~~s~s~-D~~i~~w~~~~~~--- 92 (342)
+.+..|+|+|+.+.|++ ....+.|.-.+.. ++++..+. --+..-++++..++.++.... ++.+.+..+....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 34999999998776654 4555776666654 44443332 235678889987776665553 6777777763321
Q ss_pred -e---e--ec---ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384 93 -E---D--IL---GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 93 -~---~--~~---~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~ 130 (342)
. . .+ ..+...+-.++|.+.++.|+.+-...-.+++.++
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence 1 1 11 1355668999999988888777666666676554
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.47 E-value=1.3 Score=43.25 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=59.6
Q ss_pred CeEEEEEcCCCCeEEEEeCC-CcEEEE-----------ECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEE---
Q 019384 21 GISNLRFSNHSDHLLVSSWD-KSVRLY-----------DASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRR--- 85 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s~D-gti~vw-----------d~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~--- 85 (342)
..+.-+|+|||+.|++.+.. ..+++. ++..+.... ...+.|..+.|++|+..+....++.+.+
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~V 475 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVV 475 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEE
Confidence 46778999998888776533 223333 333333222 3456799999998887654444565544
Q ss_pred EEeccCceee-----c-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcC
Q 019384 86 LVFSHGKEDI-----L-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDP 129 (342)
Q Consensus 86 w~~~~~~~~~-----~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~ 129 (342)
-....+...+ + .+-...+.+++|..++.+ +.+..+..-.+|-+
T Consensus 476 vr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v 524 (591)
T PRK13616 476 EQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYV 524 (591)
T ss_pred EeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEE
Confidence 2222232221 2 223344688999988774 44444444445543
No 371
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=0.18 Score=51.11 Aligned_cols=133 Identities=17% Similarity=0.146 Sum_probs=78.2
Q ss_pred EEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc---cceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeE
Q 019384 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK---KYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFV 267 (342)
Q Consensus 192 ~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~---~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I 267 (342)
..+.+.+|+...++....+...|..||+.+..... ...+..|.... +...-..++.|.|.=. ..+.+..|+.|
T Consensus 104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~---ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF---EKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh---ccccccccccccCCccchhhhhccccch
Confidence 33445566554444433334456789987543222 12233332211 1111245677887633 56788899999
Q ss_pred EEEeCCCcee-eeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc--CCccccCCCCCCC
Q 019384 268 NVWDGNNKKR-LYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN--EIEVKPKPKAYPN 339 (342)
Q Consensus 268 ~iWd~~~~~~-~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 339 (342)
++..+.-... +..+ ......++++|||.|+.++.|-..+ .+++|.-+ +-.+.|+|+-|+|
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnG-----------t~vQy~P~leik~~ip~Pp~~e~ 243 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNG-----------TEVQYEPSLEIKSEIPEPPVEEN 243 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCC-----------eEEEeecccceeecccCCCcCCC
Confidence 9987653222 2222 3456789999999999999987766 56666432 3456677777763
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.81 E-value=7.3 Score=38.22 Aligned_cols=102 Identities=9% Similarity=0.059 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCCeEEEEe------CCCcEEEE--ECCCceeeeeeecCCceEEEEEeCCCC-eEEEecC----------
Q 019384 20 DGISNLRFSNHSDHLLVSS------WDKSVRLY--DASANVLRGEFMHGGPVLDCCFHDDSS-GFSASAD---------- 80 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~s------~Dgti~vw--d~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D---------- 80 (342)
..+.+.++||+|+.+|-.- .|..-.|| +..... ... ........-.|++++. +.+.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~l-t~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQV-LEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eee-ecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4678899999999887554 34444455 442222 211 1223366677877744 3333321
Q ss_pred C--cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEE
Q 019384 81 H--TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKC 126 (342)
Q Consensus 81 ~--~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~i 126 (342)
+ .+.+..++.+.... .....|..+.|+|||.+++--. ++.|.+
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 1 12222332222111 3345799999999999886544 466555
No 373
>PHA02713 hypothetical protein; Provisional
Probab=93.63 E-value=7.6 Score=37.87 Aligned_cols=23 Identities=0% Similarity=-0.065 Sum_probs=18.3
Q ss_pred CCCeEEEecCCC--eEEEEeCCCce
Q 019384 254 IYGTFATGGCDG--FVNVWDGNNKK 276 (342)
Q Consensus 254 ~~~~l~sgs~Dg--~I~iWd~~~~~ 276 (342)
++..+++|+.|+ ++..||..+.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 578889999988 78888877643
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=6.1 Score=36.47 Aligned_cols=194 Identities=19% Similarity=0.202 Sum_probs=110.6
Q ss_pred EEEEEcCCCCe-EEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC-CeEEEec---CCcEEEEEeccCceee-c
Q 019384 23 SNLRFSNHSDH-LLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS-SGFSASA---DHTVRRLVFSHGKEDI-L 96 (342)
Q Consensus 23 ~~l~fs~~~~~-l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~-~~~s~s~---D~~i~~w~~~~~~~~~-~ 96 (342)
..++.++.+.. .++...+++|.+.|....+......-......+.+.+++ .++.+-. ++++.+.|-.+..... .
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 46788888874 455566799999997776665554444466788888666 4444333 5667666666555322 1
Q ss_pred ccCCcceeEEEEeCCCCEEEE-eeCCCcEEEEcCCCCCCccee---eeeecCCCCcEEEEeccCCeEEEEEcC---CeEE
Q 019384 97 GKHDAPVRCIEYSYAAGQVIT-GSWDKSLKCWDPRGASGQERT---LVGTYPQPERVYSLSLVGNRLVVATAG---RHVN 169 (342)
Q Consensus 97 ~~h~~~V~~~~~~~~~~~l~s-gs~D~~I~iWd~~~~~~~~~~---~~~~~~~~~~v~~~s~~~~~~~~~s~d---~~v~ 169 (342)
..-..+ ..+++.|+++.++. -+.+++|.+.|.......... ....... .....++.++..+...-.. +.+.
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCCceEE
Confidence 111123 78999999986654 457889999997643221000 0111111 1234566677654433333 4788
Q ss_pred EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC-CeEEEEEeechh
Q 019384 170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE-GRVAMEFFDLSE 221 (342)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-~~~~i~~~d~~~ 221 (342)
..|..+............. ....+...|++..+.+.... +.+ .+.|...
T Consensus 235 ~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V--~vid~~~ 284 (381)
T COG3391 235 KIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTV--SVIDGAT 284 (381)
T ss_pred EEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeE--EEEeCCC
Confidence 8888765332211111111 34456788998887766443 433 4455543
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.48 E-value=2.4 Score=39.20 Aligned_cols=60 Identities=20% Similarity=0.139 Sum_probs=32.8
Q ss_pred eeEEEEcCCCCeE-EEecCCCeEEEEeCCCc---eeeeccC----------------CCCcceEEEEECCCCCEEEEEEe
Q 019384 246 VNAIAFHPIYGTF-ATGGCDGFVNVWDGNNK---KRLYQYS----------------KYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 246 v~~v~~sp~~~~l-~sgs~Dg~I~iWd~~~~---~~~~~~~----------------~~~~~V~~v~~spdg~~las~s~ 305 (342)
|+.+..|.|.++| +++-.+|.||.||+.+. +.+.+.. .-.+..+-|..|.||++|=...|
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 6778999999987 66778999999998753 3332211 01123477899999998777666
No 376
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.29 E-value=5.4 Score=38.22 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=67.0
Q ss_pred CCeEEEEEcCC----CCeEEEEeCCCcEEEEECCC-----ceeee----eeecCCce--EEEEEeCCCCeEEEecCCcEE
Q 019384 20 DGISNLRFSNH----SDHLLVSSWDKSVRLYDASA-----NVLRG----EFMHGGPV--LDCCFHDDSSGFSASADHTVR 84 (342)
Q Consensus 20 ~~V~~l~fs~~----~~~l~s~s~Dgti~vwd~~~-----~~~~~----~~~h~~~V--~~~~~~~~~~~~s~s~D~~i~ 84 (342)
+-|..++|.|- ...|++....+.|.||.+.- .++.. ++...-+| .+|.|+|...+++.=....+.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 57899999985 44677788889999999841 22221 11222233 468888877765443333332
Q ss_pred -EEEeccCc--eeecccCCcceeEEEEeCCCCEEEEe-eCCCcEEEEcC
Q 019384 85 -RLVFSHGK--EDILGKHDAPVRCIEYSYAAGQVITG-SWDKSLKCWDP 129 (342)
Q Consensus 85 -~w~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~sg-s~D~~I~iWd~ 129 (342)
+.++.... ...=..-.+-|.|.+|.+||++|+.+ +..=.-.+||-
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 23333222 22222455779999999999887543 33335689984
No 377
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.23 E-value=7.2 Score=36.40 Aligned_cols=182 Identities=16% Similarity=0.149 Sum_probs=93.4
Q ss_pred EEEcCCCCeEEEEeCC-----------CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384 25 LRFSNHSDHLLVSSWD-----------KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 25 l~fs~~~~~l~s~s~D-----------gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~ 93 (342)
++.+|.|.-+|....+ ..|+||+..+..+....--.+.|.++.|..+..++....||.++++++.....
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~ 113 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQ 113 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCcee
Confidence 4556666666655444 25999998876554432223899999999888899999999999999853321
Q ss_pred eecc-------cCCcceeEEEEeCCCCEEEEeeCCCcEEEE-cCCCCCCcce--eee---e---ecCCCCcEEEEeccCC
Q 019384 94 DILG-------KHDAPVRCIEYSYAAGQVITGSWDKSLKCW-DPRGASGQER--TLV---G---TYPQPERVYSLSLVGN 157 (342)
Q Consensus 94 ~~~~-------~h~~~V~~~~~~~~~~~l~sgs~D~~I~iW-d~~~~~~~~~--~~~---~---~~~~~~~v~~~s~~~~ 157 (342)
..+. -....+....+...|-.++++ ++.|.+- +......... ... . .......+..++.+..
T Consensus 114 fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~ 191 (410)
T PF04841_consen 114 FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV 191 (410)
T ss_pred echhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc
Confidence 1110 011112222222233223333 3333222 2111000000 000 0 0000111222333444
Q ss_pred eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384 158 RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM 214 (342)
Q Consensus 158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i 214 (342)
..+....++.+.+.+-..... .....++..++++|+++.++.-..++.+.+
T Consensus 192 ~~i~~~~g~~i~~i~~~~~~~------i~~~~~i~~iavSpng~~iAl~t~~g~l~v 242 (410)
T PF04841_consen 192 VEILLANGETIYIIDENSFKQ------IDSDGPIIKIAVSPNGKFIALFTDSGNLWV 242 (410)
T ss_pred eEEEEecCCEEEEEEcccccc------ccCCCCeEEEEECCCCCEEEEEECCCCEEE
Confidence 455556666677555432211 011235778889999999998888887644
No 378
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.18 E-value=8.3 Score=36.93 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=41.4
Q ss_pred CCeEEEEeCCCcEEEEECCCceeeeeeecCCc-------eE--EEEEeCCCCeEEEecCCcEEEEEeccCcee
Q 019384 31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGP-------VL--DCCFHDDSSGFSASADHTVRRLVFSHGKED 94 (342)
Q Consensus 31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~-------V~--~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~ 94 (342)
+..+..++.|+.+.-.|..+++.+-.+.-... +. .+....+++++.++.++.+.-+|.++++..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEe
Confidence 35666788899999999988775443321111 11 112222267788888999999998888743
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.11 E-value=9.3 Score=37.36 Aligned_cols=225 Identities=18% Similarity=0.207 Sum_probs=108.0
Q ss_pred cCCCCeEEEEeCC------CcEEEEECCCceeeee--eecCCceEEEEEeCCCCeEEEecC-C-----cEEEEEeccCce
Q 019384 28 SNHSDHLLVSSWD------KSVRLYDASANVLRGE--FMHGGPVLDCCFHDDSSGFSASAD-H-----TVRRLVFSHGKE 93 (342)
Q Consensus 28 s~~~~~l~s~s~D------gti~vwd~~~~~~~~~--~~h~~~V~~~~~~~~~~~~s~s~D-~-----~i~~w~~~~~~~ 93 (342)
+..+.+++.||.+ .++..+|..++..... ......-.++++..+...++||.| + ++..||..+...
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 3345667778777 4778888877643221 112223345555555444578878 3 355666666553
Q ss_pred eecc---c--CCcceeEEEEeCCCCEEEEeeCCC-----cEEEEcCCCCCCcceeeeeecCCCCc-EEEEeccCCeEEEE
Q 019384 94 DILG---K--HDAPVRCIEYSYAAGQVITGSWDK-----SLKCWDPRGASGQERTLVGTYPQPER-VYSLSLVGNRLVVA 162 (342)
Q Consensus 94 ~~~~---~--h~~~V~~~~~~~~~~~l~sgs~D~-----~I~iWd~~~~~~~~~~~~~~~~~~~~-v~~~s~~~~~~~~~ 162 (342)
..+. . +.-.+..+ +|...+.|+.|| +|..||.++..= ........... .......+...++|
T Consensus 362 ~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W---~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKW---TPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred eccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcc---cccCCCCcceeeeEEEEECCEEEEEc
Confidence 3211 1 11222222 466678888886 577888764321 11111111111 12233455555666
Q ss_pred EcCC------eEEEEeCCCCCCccccccccccee--eEEEEEeeCCceEEEEccCCe---EEEEEeechhhhhcccceee
Q 019384 163 TAGR------HVNVYDLRNMSQPEQRRESSLKYQ--TRCVRCYPNGTGYALSSVEGR---VAMEFFDLSEASQAKKYAFK 231 (342)
Q Consensus 163 s~d~------~v~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~~~~---~~i~~~d~~~~~~~~~~~~~ 231 (342)
+.++ .+..||-.+..=.. ..+.... ...+ ..-++..+++|+.++. -.+..||....+....-.+.
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~---~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTL---IAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred CcCCCccccceEEEEcCCCCceee---cCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 6453 47778876642110 0011100 0111 2335566677776652 22456776443221111111
Q ss_pred eEEecCCCCceeeeeeEEEEc-CCCCeEEEecCCC-----eEEEEeCCCc
Q 019384 232 CHRKSEAGRDIVYPVNAIAFH-PIYGTFATGGCDG-----FVNVWDGNNK 275 (342)
Q Consensus 232 ~h~~~~~~~~~~~~v~~v~~s-p~~~~l~sgs~Dg-----~I~iWd~~~~ 275 (342)
. +...+... -++..++.|+.|| +|..||..+.
T Consensus 511 ~------------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 511 S------------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred c------------ccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 0 11111111 2466778888877 5777776543
No 380
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=7.5 Score=35.86 Aligned_cols=264 Identities=11% Similarity=0.057 Sum_probs=138.3
Q ss_pred CeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeeeecC-CceEEEEEeCCCC-eE-EEecCCcEEEEEeccCceeec
Q 019384 21 GISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEFMHG-GPVLDCCFHDDSS-GF-SASADHTVRRLVFSHGKEDIL 96 (342)
Q Consensus 21 ~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~~h~-~~V~~~~~~~~~~-~~-s~s~D~~i~~w~~~~~~~~~~ 96 (342)
....+...+++..+ ++-....++.+.+...........-. .....+++++.+. ++ ....++.+.+.|..+......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 45567778887544 33333335555554421111111111 2224556655444 44 444467888888666553322
Q ss_pred ccCCcceeEEEEeCCCCEEEEeeC---CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE-EcCCeEEEEe
Q 019384 97 GKHDAPVRCIEYSYAAGQVITGSW---DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA-TAGRHVNVYD 172 (342)
Q Consensus 97 ~~h~~~V~~~~~~~~~~~l~sgs~---D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~-s~d~~v~iwd 172 (342)
..-...-..++++++++.++.+.. ++++-+.|..+.... .....-..+ .-..++.+++.++.+ ..++++.++|
T Consensus 112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~--~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT--ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE--EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 222225668999999987765444 678888886543321 111110112 334566677755544 4678999999
Q ss_pred CCCCCCccccc---ccccceeeEEEEEeeCCceEEEEccCC-eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384 173 LRNMSQPEQRR---ESSLKYQTRCVRCYPNGTGYALSSVEG-RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248 (342)
Q Consensus 173 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~s~~~-~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 248 (342)
........ .. ..........+.+.|++..+.+..... +..+...|......... .... ... ....
T Consensus 189 ~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~-~~~~--------~~~-~~~~ 257 (381)
T COG3391 189 TSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT-DLPV--------GSG-APRG 257 (381)
T ss_pred CCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe-cccc--------ccC-CCCc
Confidence 76542211 00 011112235577889988665554332 13344455543211100 0000 000 1335
Q ss_pred EEEcCCCCeEEEe-cCCCeEEEEeCCCceeeeccCCC---CcceEEEEECCCCC
Q 019384 249 IAFHPIYGTFATG-GCDGFVNVWDGNNKKRLYQYSKY---PTSIAALSFSRDGR 298 (342)
Q Consensus 249 v~~sp~~~~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~---~~~V~~v~~spdg~ 298 (342)
++++|+|..+.+. +..+++.+-|..+.......... ...+..+++.+...
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 311 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD 311 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence 7899999988776 44589999998876555433222 23456666666543
No 381
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=1.2 Score=41.16 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=66.1
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--e---cCCceEEEEEeCCCCeEEEecCCcEEEEEec-
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--M---HGGPVLDCCFHDDSSGFSASADHTVRRLVFS- 89 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~---h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~- 89 (342)
-...+.|.++.||+|.+.||.--.|++|.+++.......... . .+..|.+.+|.+...++..+..| +.++-..
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEch
Confidence 344679999999999999999999999999997433211111 1 23458899998776555444433 3344332
Q ss_pred -cCceeecccCCcceeEEEEeCCCCEE
Q 019384 90 -HGKEDILGKHDAPVRCIEYSYAAGQV 115 (342)
Q Consensus 90 -~~~~~~~~~h~~~V~~~~~~~~~~~l 115 (342)
....+....|.-.|+=-.|+++...+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceE
Confidence 22234556677788888888877654
No 382
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=92.82 E-value=8 Score=35.85 Aligned_cols=196 Identities=13% Similarity=0.136 Sum_probs=94.7
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee---------cCCceEEEEEe-----CCC----CeEEEecC
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM---------HGGPVLDCCFH-----DDS----SGFSASAD 80 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~---------h~~~V~~~~~~-----~~~----~~~s~s~D 80 (342)
.+.|++++.|.- ..+|.|..||++.|.|+.+..++.... ....|+++.|. .|+ .++.|...
T Consensus 86 ~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 689999998744 589999999999999998776544321 12357778775 233 24678888
Q ss_pred CcEEEEEec--c-Cce-----eecccCCcceeEEE-EeCCC--------------------CEEEEeeCCCcEEEEcCCC
Q 019384 81 HTVRRLVFS--H-GKE-----DILGKHDAPVRCIE-YSYAA--------------------GQVITGSWDKSLKCWDPRG 131 (342)
Q Consensus 81 ~~i~~w~~~--~-~~~-----~~~~~h~~~V~~~~-~~~~~--------------------~~l~sgs~D~~I~iWd~~~ 131 (342)
|.+..|.+- . +.. .....+.++|..+. ++.+. ..++....+..||++.+-+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 988877653 1 111 11224556666655 32221 1233344578899998754
Q ss_pred CCCcceeeeeecCCCCcE--EEEe-----ccCCeEEEEEcCCeEEEEeCCCCCCccccccc-ccce-eeEEEEEeeCCce
Q 019384 132 ASGQERTLVGTYPQPERV--YSLS-----LVGNRLVVATAGRHVNVYDLRNMSQPEQRRES-SLKY-QTRCVRCYPNGTG 202 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v--~~~s-----~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~ 202 (342)
... .. ..+..+..+ ..+. ..+..+++-..+|.++++-+-..+........ .... ......+.++|..
T Consensus 245 ~k~-~~---K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 245 SKG-AH---KSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp --E-EE---EE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred Ccc-cc---eeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence 322 11 111111111 1121 12346777899999999998664322111100 0000 0112345777776
Q ss_pred EEEEccCCeEEEEEeec
Q 019384 203 YALSSVEGRVAMEFFDL 219 (342)
Q Consensus 203 ~~~~s~~~~~~i~~~d~ 219 (342)
++..+...-..+.+|..
T Consensus 321 ~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 321 FYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp EEE-SSSEEEEEEEES-
T ss_pred EEEeCcccEEEEEEEcc
Confidence 66665554444444443
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=0.73 Score=46.75 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=47.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEe---CCCC-eEEEecCCc
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFH---DDSS-GFSASADHT 82 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~---~~~~-~~s~s~D~~ 82 (342)
...|++++|+.+|..++.|-.+|.|.+||...++.... ..|..++.++-+. .++. ++++-.-|.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 56899999999999999999999999999998765544 3466666555543 3334 455555554
No 384
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.89 E-value=0.11 Score=51.31 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=72.4
Q ss_pred ccCCCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECC--Cceeeeee-----e-cCCc---eEEEEEeCCCCeEE-Ee
Q 019384 12 RELGNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDAS--ANVLRGEF-----M-HGGP---VLDCCFHDDSSGFS-AS 78 (342)
Q Consensus 12 ~~~~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~--~~~~~~~~-----~-h~~~---V~~~~~~~~~~~~s-~s 78 (342)
++|..+..++|-.|+|.. +..+++ -.=|..-|||++ .|++...+ . .... |..|-|......+. +-
T Consensus 125 ~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 125 NELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred HHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence 356677788999999875 333443 222788999975 34432221 1 1222 33333434443333 33
Q ss_pred cCCcEEEEEeccCceeecccCCcceeEE-----------EEeCCCCEEEEeeCCCcEEEEcCC
Q 019384 79 ADHTVRRLVFSHGKEDILGKHDAPVRCI-----------EYSYAAGQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 79 ~D~~i~~w~~~~~~~~~~~~h~~~V~~~-----------~~~~~~~~l~sgs~D~~I~iWd~~ 130 (342)
.++++++..+.+....++.+|...+..+ ..+|||+.|+..+.||.++.|-+.
T Consensus 203 ~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 5668998888776666677787554432 257899999999999988888653
No 385
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.54 E-value=14 Score=35.78 Aligned_cols=52 Identities=17% Similarity=0.375 Sum_probs=34.5
Q ss_pred CCCeEEEecCCCeEEEEeCCCceeeeccCCCCc-ceEEEEECCCCC-EEEEEEe
Q 019384 254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT-SIAALSFSRDGR-LLAVASS 305 (342)
Q Consensus 254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~-~V~~v~~spdg~-~las~s~ 305 (342)
.+..++.+..||.++.+|.++++.+.++.-... .-.-+.|.-||+ |++..+.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~~~~G 524 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVLSG 524 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEEEEec
Confidence 355677788899999999999998876543221 113344556777 5554443
No 386
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.78 E-value=20 Score=36.12 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=57.2
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeec-CCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384 16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMH-GGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE 93 (342)
Q Consensus 16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h-~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~ 93 (342)
+...-.|..|.++++|.+||-.|..|.+.+ .+... ...+.+.. ...|.|=.+.=+..++
T Consensus 81 ~~~~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~------------------ 141 (717)
T PF10168_consen 81 NPPLFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFF------------------ 141 (717)
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhc------------------
Confidence 344568999999999999998888765444 33211 00111111 1223333332121111
Q ss_pred eecccCCcceeEEEEeCC---CCEEEEeeCCCcEEEEcCCC
Q 019384 94 DILGKHDAPVRCIEYSYA---AGQVITGSWDKSLKCWDPRG 131 (342)
Q Consensus 94 ~~~~~h~~~V~~~~~~~~---~~~l~sgs~D~~I~iWd~~~ 131 (342)
...+...|..+.|+|. +..|+.=..|++||+||+..
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1233456889999985 46777778899999999864
No 387
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.76 E-value=17 Score=35.26 Aligned_cols=106 Identities=21% Similarity=0.224 Sum_probs=53.7
Q ss_pred CCCeEEEecCCcEEEEEeccCceee---cccCC--cce-------eEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCccee
Q 019384 71 DSSGFSASADHTVRRLVFSHGKEDI---LGKHD--APV-------RCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT 138 (342)
Q Consensus 71 ~~~~~s~s~D~~i~~w~~~~~~~~~---~~~h~--~~V-------~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~ 138 (342)
++.++.++.++.+.-+|..+++..- ..... ..+ ..+++. +..++.++.|+.+.-.|.++++..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 5566777777777777777766321 11100 011 112222 356777888999998898765432111
Q ss_pred eeeecCCCCcEEE-EeccCCeEEEEEc------CCeEEEEeCCCCCC
Q 019384 139 LVGTYPQPERVYS-LSLVGNRLVVATA------GRHVNVYDLRNMSQ 178 (342)
Q Consensus 139 ~~~~~~~~~~v~~-~s~~~~~~~~~s~------d~~v~iwd~~~~~~ 178 (342)
..........+.+ -...++.+++++. ++.|.-+|+++++.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 1110000000100 0112345555543 56788888887754
No 388
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.64 E-value=14 Score=34.28 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=56.7
Q ss_pred EEEEeCCCCeE--EEecCC----cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCC-----------cEEEE
Q 019384 65 DCCFHDDSSGF--SASADH----TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDK-----------SLKCW 127 (342)
Q Consensus 65 ~~~~~~~~~~~--s~s~D~----~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~-----------~I~iW 127 (342)
...++|++..+ +.+..| .++++|+.+++...-.-....-.++.|.++++.|+-...|. .|.+|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 45667777653 334444 48899998875321110111123499999987765444333 37888
Q ss_pred cCCCCCCcceeeeeecCCCCcEE--EEeccCCeEEEEEcCC----eEEEEeCCCC
Q 019384 128 DPRGASGQERTLVGTYPQPERVY--SLSLVGNRLVVATAGR----HVNVYDLRNM 176 (342)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~~~v~--~~s~~~~~~~~~s~d~----~v~iwd~~~~ 176 (342)
++.+.......++.........+ ..+.+++.+++.+..+ .+.+.|+...
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 87654332122333222222122 3445566655433332 4777787764
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.11 E-value=16 Score=34.02 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=49.6
Q ss_pred CCCcEEEEECCCceeeeeeecC---CceEEEEEe--CCCC-eE-EEecCCcEEEEEe-ccCc---eeecc-------cC-
Q 019384 39 WDKSVRLYDASANVLRGEFMHG---GPVLDCCFH--DDSS-GF-SASADHTVRRLVF-SHGK---EDILG-------KH- 99 (342)
Q Consensus 39 ~Dgti~vwd~~~~~~~~~~~h~---~~V~~~~~~--~~~~-~~-s~s~D~~i~~w~~-~~~~---~~~~~-------~h- 99 (342)
+-.++.+||+.+.+++..+.-. ..+.-+.|. |+.. -+ .+.-...|.+|.- +.+. +.++. +-
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 4578999999998877766433 346788886 3333 23 3344445544433 2222 11110 00
Q ss_pred -----------CcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCC
Q 019384 100 -----------DAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGAS 133 (342)
Q Consensus 100 -----------~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~ 133 (342)
-.-|+.|..+.|+++| +++-.+|.||.||+....
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 1347888999999888 567788999999986543
No 390
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.83 E-value=3.3 Score=34.93 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=23.2
Q ss_pred EEcCCCCeEEEEeCCCcEEEEECCCcee
Q 019384 26 RFSNHSDHLLVSSWDKSVRLYDASANVL 53 (342)
Q Consensus 26 ~fs~~~~~l~s~s~Dgti~vwd~~~~~~ 53 (342)
.+...+.+|+.-..+|.+++||+.+++.
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCee
Confidence 3456788899999999999999987654
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.80 E-value=11 Score=31.86 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=47.1
Q ss_pred eeEEEEeCCCCEE-EEeeCCCcEEEEc--CCCCCCcce-eeeeec-----CC-CCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384 103 VRCIEYSYAAGQV-ITGSWDKSLKCWD--PRGASGQER-TLVGTY-----PQ-PERVYSLSLVGNRLVVATAGRHVNVYD 172 (342)
Q Consensus 103 V~~~~~~~~~~~l-~sgs~D~~I~iWd--~~~~~~~~~-~~~~~~-----~~-~~~v~~~s~~~~~~~~~s~d~~v~iwd 172 (342)
-+.++|+.+.+.+ ++-+.+-+|.-|| ..++....+ ..+.-. .+ ...-.+++..++..+++-.+++|..+|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 3468888777766 5678888998898 433321111 111110 11 111234455677778888889999999
Q ss_pred CCCCCCcc
Q 019384 173 LRNMSQPE 180 (342)
Q Consensus 173 ~~~~~~~~ 180 (342)
..+++...
T Consensus 240 p~tGK~L~ 247 (310)
T KOG4499|consen 240 PTTGKILL 247 (310)
T ss_pred CCCCcEEE
Confidence 99886543
No 392
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.77 E-value=16 Score=33.50 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=21.9
Q ss_pred CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEE
Q 019384 265 GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAV 302 (342)
Q Consensus 265 g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las 302 (342)
|.|.-++...++......++ ...+.++|+|+|+++++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEE
Confidence 44555555543322222343 33579999999998765
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.75 E-value=13 Score=32.47 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=33.8
Q ss_pred EEcCCCCeEEEEeCC-----CcEEEEECCCce-eeee-eecCCceEEEEEeCCCCeEEEe
Q 019384 26 RFSNHSDHLLVSSWD-----KSVRLYDASANV-LRGE-FMHGGPVLDCCFHDDSSGFSAS 78 (342)
Q Consensus 26 ~fs~~~~~l~s~s~D-----gti~vwd~~~~~-~~~~-~~h~~~V~~~~~~~~~~~~s~s 78 (342)
.||+||.+|...=.| |.|-|||...+. ...+ ..|.-....+.+.+|++++...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence 588999888765444 888899987432 2222 2455555677777777665433
No 394
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.04 E-value=6.8 Score=32.66 Aligned_cols=122 Identities=18% Similarity=0.155 Sum_probs=66.6
Q ss_pred EEeccC-CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeE------EEE-Eeech-h
Q 019384 151 SLSLVG-NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV------AME-FFDLS-E 221 (342)
Q Consensus 151 ~~s~~~-~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~------~i~-~~d~~-~ 221 (342)
.++..+ +.++.++.+..|..|++.....+.... -+.-..+..+..+..|+++++...+... +++ -|... +
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~-F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCT-FSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEE-EcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 344445 677677888899999998433222111 1112346677888889998887654322 221 23322 1
Q ss_pred hhhcccceeeeEEecCCC------------CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384 222 ASQAKKYAFKCHRKSEAG------------RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 222 ~~~~~~~~~~~h~~~~~~------------~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~ 274 (342)
....-...+.+|.-.... .....++.+++..|-...|+.|+ ++.+.||....
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 111111123343221110 01123577889888877777776 45889997653
No 395
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.03 E-value=4 Score=34.46 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=42.5
Q ss_pred EcCCCCeEEEecCCCeEEEEeCCCceeeec-------cC-------CCCcceEEEEECCCCCEEEEEEe
Q 019384 251 FHPIYGTFATGGCDGFVNVWDGNNKKRLYQ-------YS-------KYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 251 ~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~-------~~-------~~~~~V~~v~~spdg~~las~s~ 305 (342)
+...+.+|++-..+|.+++||+.+++.+.. +. .....|..+.++.+|.-|++-+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 445688899999999999999998765432 12 24567899999999998887663
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.80 E-value=11 Score=37.12 Aligned_cols=105 Identities=18% Similarity=0.182 Sum_probs=66.8
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee--eecCCceEEEEEe--CCCC-eEEEecCCcEEEEEec-----cC-
Q 019384 23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE--FMHGGPVLDCCFH--DDSS-GFSASADHTVRRLVFS-----HG- 91 (342)
Q Consensus 23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~--~~h~~~V~~~~~~--~~~~-~~s~s~D~~i~~w~~~-----~~- 91 (342)
.-++-|+-++..+.-+.-.++.|||...+.+..+ +...+.|.++.|. ++++ +++.|..+.|.++--- ..
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 3344444444444444557899999988764433 3457899999995 6665 4688999988777421 11
Q ss_pred c------eeecccCC-cceeEEEEeCCCCEEEEeeCCCcEEEEcC
Q 019384 92 K------EDILGKHD-APVRCIEYSYAAGQVITGSWDKSLKCWDP 129 (342)
Q Consensus 92 ~------~~~~~~h~-~~V~~~~~~~~~~~l~sgs~D~~I~iWd~ 129 (342)
. ..-+..|+ .+|....|.++|..++.+ ++.+.|+|.
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 0 01134555 678999999888665543 357888874
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.79 E-value=31 Score=35.43 Aligned_cols=291 Identities=15% Similarity=0.082 Sum_probs=130.3
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeC--CC-----CeEEEecCCcEEEEEe-c
Q 019384 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHD--DS-----SGFSASADHTVRRLVF-S 89 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~--~~-----~~~s~s~D~~i~~w~~-~ 89 (342)
.+++..+-+.+...++.++.++.+...++..+.++... .-...|.|+.++| +. .++.|.++..+.+.-. .
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 33443333444445666666666666666544432222 2346788888873 22 2346666666544432 2
Q ss_pred cCceee---cccC--CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC--CCCcEEEEeccCCeEEEE
Q 019384 90 HGKEDI---LGKH--DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP--QPERVYSLSLVGNRLVVA 162 (342)
Q Consensus 90 ~~~~~~---~~~h--~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~v~~~s~~~~~~~~~ 162 (342)
...... +.+- -..|.-..+--|..+|+++..||.+..+-+...+++.......+- .+.....++.....-+.|
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa 647 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFA 647 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEE
Confidence 211111 1110 012334444445778999999999887755433332111110010 122333454444444555
Q ss_pred EcCCeEEEEeCCCCCCcccccccccce-eeEEEEEeeC-CceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCC
Q 019384 163 TAGRHVNVYDLRNMSQPEQRRESSLKY-QTRCVRCYPN-GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240 (342)
Q Consensus 163 s~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~ 240 (342)
..|+-..+|--+.. ..... ...+. ...|-..++. ...++++.. +.+. +..+.+........+.
T Consensus 648 ~sdrP~viY~~n~k-Lv~sp--ls~kev~~~c~f~s~a~~d~l~~~~~-~~l~--i~tid~iqkl~irtvp--------- 712 (1096)
T KOG1897|consen 648 LSDRPTVIYSSNGK-LVYSP--LSLKEVNHMCPFNSDAYPDSLASANG-GALT--IGTIDEIQKLHIRTVP--------- 712 (1096)
T ss_pred eCCCCEEEEecCCc-EEEec--cchHHhhhhcccccccCCceEEEecC-CceE--EEEecchhhcceeeec---------
Confidence 56655555543321 00000 00000 0011101111 123344333 3332 2333222111111111
Q ss_pred ceeeeeeEEEEcCCCCeEEEecC-----------C---CeEEEEeCCCceeeeccC--CC--CcceEEEEECCC-CCEEE
Q 019384 241 DIVYPVNAIAFHPIYGTFATGGC-----------D---GFVNVWDGNNKKRLYQYS--KY--PTSIAALSFSRD-GRLLA 301 (342)
Q Consensus 241 ~~~~~v~~v~~sp~~~~l~sgs~-----------D---g~I~iWd~~~~~~~~~~~--~~--~~~V~~v~~spd-g~~la 301 (342)
..++...+++.+....+++.+. . ..++++|-++.+.+..++ .. .-.|.++.|..| +.+++
T Consensus 713 -l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~v 791 (1096)
T KOG1897|consen 713 -LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYV 791 (1096)
T ss_pred -CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEE
Confidence 1124566777764444443321 1 137778877765554322 11 124666679888 88999
Q ss_pred EEEeccccCCCCCCCCCcEEEEEccC
Q 019384 302 VASSYTFEEGDKPHEPDAIFVRSVNE 327 (342)
Q Consensus 302 s~s~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
+|.+..+.+-..+ ..--|++++.++
T Consensus 792 VGT~~v~Pde~ep-~~GRIivfe~~e 816 (1096)
T KOG1897|consen 792 VGTGLVYPDENEP-VNGRIIVFEFEE 816 (1096)
T ss_pred EEEEeeccCCCCc-ccceEEEEEEec
Confidence 9998543322211 111377776665
No 398
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.65 E-value=15 Score=34.21 Aligned_cols=109 Identities=10% Similarity=0.163 Sum_probs=63.2
Q ss_pred EEEEeCCCCeEEEecCCcEEEEEeccCceee---c-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeee
Q 019384 65 DCCFHDDSSGFSASADHTVRRLVFSHGKEDI---L-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV 140 (342)
Q Consensus 65 ~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~---~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~ 140 (342)
.+-|.+.++++.|...+-+.-|.....+... + -...++|.++.|++|.+.||.--.|.+|.+.......... ...
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l-~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL-EYT 105 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-HHH
Confidence 3444455555555555666666655443221 1 1244699999999999999999999999999864322111 111
Q ss_pred eecC-CCCcEEEEeccCC-eEEEEEcCCeEEEEeCCC
Q 019384 141 GTYP-QPERVYSLSLVGN-RLVVATAGRHVNVYDLRN 175 (342)
Q Consensus 141 ~~~~-~~~~v~~~s~~~~-~~~~~s~d~~v~iwd~~~ 175 (342)
..++ ....+..|.|..+ .++..+..| +-+|-...
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred HHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEch
Confidence 1111 2334677777544 455555443 66665543
No 399
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.50 E-value=1.9 Score=40.45 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384 254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
.+.++|.||..|-||+||.-....-.-+++....|..+..+.+|++|++.|..
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 35789999999999999976544444567777889999999999988877764
No 400
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.50 E-value=1.1 Score=25.98 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=17.7
Q ss_pred CCCCcceEEEEECCCCCEEEEEEec
Q 019384 282 SKYPTSIAALSFSRDGRLLAVASSY 306 (342)
Q Consensus 282 ~~~~~~V~~v~~spdg~~las~s~~ 306 (342)
......-...+|||||++|+-++..
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred ccCCccccCEEEecCCCEEEEEecC
Confidence 3344567899999999999877653
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.38 E-value=16 Score=31.66 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=63.1
Q ss_pred eeeeeecCCc--eEEEEEeCCCCeE-EEecCC--cEEEEEeccCceee---cccCCcceeEEEEeCCCCEEEEeeCCCcE
Q 019384 53 LRGEFMHGGP--VLDCCFHDDSSGF-SASADH--TVRRLVFSHGKEDI---LGKHDAPVRCIEYSYAAGQVITGSWDKSL 124 (342)
Q Consensus 53 ~~~~~~h~~~--V~~~~~~~~~~~~-s~s~D~--~i~~w~~~~~~~~~---~~~h~~~V~~~~~~~~~~~l~sgs~D~~I 124 (342)
+...+.|... ..++.|.+++.++ +.+.-| .++.+++.+++... +.. .--=-.++.. +++...-.-.+++.
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEE-CCEEEEEEecCCeE
Confidence 4455567654 3467786666665 666555 68999999887321 111 0001122222 22222333456788
Q ss_pred EEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384 125 KCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS 177 (342)
Q Consensus 125 ~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~ 177 (342)
.+||..+-. .+..+.....-..++.+++.++....+..+.++|..+.+
T Consensus 113 f~yd~~tl~-----~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 113 FVYDPNTLK-----KIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEEETTTTE-----EEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred EEEccccce-----EEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccc
Confidence 899986432 222333334455677888888877777889999987764
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.25 E-value=18 Score=32.16 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=58.0
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce--
Q 019384 17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-- 93 (342)
Q Consensus 17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-- 93 (342)
+....++.+..++||++++.++.-...+-||.-.. -......-...|..+.|.+++.+...+..+.++.=+......
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccc
Confidence 44578899999999999988877777778886433 233334456789999999888876666777776555111111
Q ss_pred -e-ec--ccCCcceeEEEEeCCCCEEEEeeCCCcEE
Q 019384 94 -D-IL--GKHDAPVRCIEYSYAAGQVITGSWDKSLK 125 (342)
Q Consensus 94 -~-~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~ 125 (342)
. .. ..-.-.+..++|.+++...++|+ .|++.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL 256 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence 0 11 11223378899998877666555 44443
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.20 E-value=26 Score=34.55 Aligned_cols=94 Identities=11% Similarity=0.185 Sum_probs=56.2
Q ss_pred CcEEEEEeccCceeecc--cCCcceeEEEEe--CCCCEEEEeeCCCcEEEEcCC----CCCCcceeeeee---cC-CCCc
Q 019384 81 HTVRRLVFSHGKEDILG--KHDAPVRCIEYS--YAAGQVITGSWDKSLKCWDPR----GASGQERTLVGT---YP-QPER 148 (342)
Q Consensus 81 ~~i~~w~~~~~~~~~~~--~h~~~V~~~~~~--~~~~~l~sgs~D~~I~iWd~~----~~~~~~~~~~~~---~~-~~~~ 148 (342)
..+.+||...+....-. ...+.|..++|. |+++.+++.+..+.|.++--. .........+.. .. .+..
T Consensus 51 ~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~ 130 (631)
T PF12234_consen 51 SELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHP 130 (631)
T ss_pred CEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCC
Confidence 35889998877633222 346789999986 588899999999999998421 001110111111 11 1133
Q ss_pred EEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384 149 VYSLSLVGNRLVVATAGRHVNVYDLR 174 (342)
Q Consensus 149 v~~~s~~~~~~~~~s~d~~v~iwd~~ 174 (342)
+.+..+.++..++.+.++.+.++|-.
T Consensus 131 Igds~Wl~~G~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 131 IGDSIWLKDGTLVVGSGNQLFVFDKW 156 (631)
T ss_pred ccceeEecCCeEEEEeCCEEEEECCC
Confidence 44556655555556667788888753
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.09 E-value=30 Score=34.43 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=36.4
Q ss_pred eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC--CCCcceEEEEECCCC
Q 019384 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSRDG 297 (342)
Q Consensus 245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~V~~v~~spdg 297 (342)
.+..+..||+.++|+-=..+|.|.+-+.+..++...+. .|..+ ..++|.-+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgnd 271 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGND 271 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecCC
Confidence 46778999999999999999999999888666555443 33222 255664433
No 405
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.59 E-value=3.3 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCC---CeEEEEeCCCcEEEEECCC
Q 019384 20 DGISNLRFSNHS---DHLLVSSWDKSVRLYDASA 50 (342)
Q Consensus 20 ~~V~~l~fs~~~---~~l~s~s~Dgti~vwd~~~ 50 (342)
++|.+++|||+. ++|+-+=.-|.|-|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4777766669999999974
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.46 E-value=18 Score=31.31 Aligned_cols=112 Identities=11% Similarity=-0.113 Sum_probs=60.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCC--cEEEEECCCceeeeeeecCCce--EEEEEeCCCCeEEEecCCcEEEEEeccCcee
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDK--SVRLYDASANVLRGEFMHGGPV--LDCCFHDDSSGFSASADHTVRRLVFSHGKED 94 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dg--ti~vwd~~~~~~~~~~~h~~~V--~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~ 94 (342)
......+.|..++.++-|.+.-| .|+.+|+.+++......-.... -.++...+......=.++...+||..+-+..
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEE
Confidence 34455688877888888877655 8999999988755433222222 2333333322223334566667777654422
Q ss_pred ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384 95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132 (342)
Q Consensus 95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~ 132 (342)
.--.....=+.++ .+++.|+.+.....|..+|.++-
T Consensus 124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred EEEecCCcceEEE--cCCCEEEEECCccceEEECCccc
Confidence 1111112334555 35667777666778999997653
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.41 E-value=7.6 Score=36.15 Aligned_cols=102 Identities=14% Similarity=0.235 Sum_probs=55.8
Q ss_pred EEEEeeCCceEEEEccCCeEEE-EEeechhhh-hcccceeeeEEecCCCC-ceeeeeeEEEE--------cCCCCeEEEe
Q 019384 193 CVRCYPNGTGYALSSVEGRVAM-EFFDLSEAS-QAKKYAFKCHRKSEAGR-DIVYPVNAIAF--------HPIYGTFATG 261 (342)
Q Consensus 193 ~v~~~~~~~~~~~~s~~~~~~i-~~~d~~~~~-~~~~~~~~~h~~~~~~~-~~~~~v~~v~~--------sp~~~~l~sg 261 (342)
.++.+|++..++++-.+.-+.+ ..|+..... ....+.+..+....... +....+.++-+ .||...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4567788887777765544332 345442211 22233333332222111 22233444444 2456789999
Q ss_pred cCCCeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384 262 GCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 262 s~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp 295 (342)
-.+|.|++|.-. +.++..-.-|..+|..+.+-.
T Consensus 86 ~ssG~vrfyte~-G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEecc-chHHHHHhcCccceEEEEecc
Confidence 999999999764 555443334677777777633
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.36 E-value=36 Score=34.61 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=41.7
Q ss_pred CCeEEEEeCCCcEEEEECCCceeeeeeecCCce---------EEEEEe-----------------CCCCeEEEecCCcEE
Q 019384 31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPV---------LDCCFH-----------------DDSSGFSASADHTVR 84 (342)
Q Consensus 31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V---------~~~~~~-----------------~~~~~~s~s~D~~i~ 84 (342)
++.|..++.++.|.=.|..+++.+-.+..+..+ ..+.+. .+++++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567777888899998999888766554333221 123332 123567888899888
Q ss_pred EEEeccCce
Q 019384 85 RLVFSHGKE 93 (342)
Q Consensus 85 ~w~~~~~~~ 93 (342)
-.|.++++.
T Consensus 274 ALDA~TGk~ 282 (764)
T TIGR03074 274 ALDADTGKL 282 (764)
T ss_pred EEECCCCCE
Confidence 888877764
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.14 E-value=19 Score=31.11 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=42.6
Q ss_pred eeeEEEEcCCCCeEEEec---CCCeEEEEeCC---Cc--eee----eccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 245 PVNAIAFHPIYGTFATGG---CDGFVNVWDGN---NK--KRL----YQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 245 ~v~~v~~sp~~~~l~sgs---~Dg~I~iWd~~---~~--~~~----~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.|.++.+||||..+|.-. .++.|.|=-+. ++ ..+ .........+.+++|.+++.+++.+...+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 589999999999876544 45677776432 22 111 12223346889999999999888776544
No 410
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=86.40 E-value=26 Score=31.92 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=35.6
Q ss_pred CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC
Q 019384 81 HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131 (342)
Q Consensus 81 ~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~ 131 (342)
+.+.++|+.++....+......+....|+|+++.++-.. ++-|.+++..+
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~ 72 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLAT 72 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTT
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCC
Confidence 456788888877555544466788899999999887664 57788888653
No 411
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.92 E-value=2.7 Score=36.56 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=44.4
Q ss_pred EEcCCCCeEEEec-----CCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 250 AFHPIYGTFATGG-----CDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 250 ~~sp~~~~l~sgs-----~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
+|||||.+|...- .-|.|-|||.+.+ ..+.++..|.---..|.+.+||+.|+.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 5899999875532 3568999998754 457788888877799999999999887765
No 412
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.20 E-value=10 Score=35.91 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=64.0
Q ss_pred CCCCCCccCCCCC----------CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCc-eEEEEEeCCCCe
Q 019384 6 PPPTSGRELGNPP----------SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGP-VLDCCFHDDSSG 74 (342)
Q Consensus 6 ~~~~~~~~~~~~~----------~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~-V~~~~~~~~~~~ 74 (342)
+||-.+.++.+.. .-.|..|..++.|..+|-+|-||.+.++=...-..-+.+.-+.+ |+|-.|+-+.++
T Consensus 80 ~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ 159 (741)
T KOG4460|consen 80 GPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF 159 (741)
T ss_pred cCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee
Confidence 4566666665433 34788899999999999999999776654221111122222223 444445444454
Q ss_pred EEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCC---CEEEEeeCCCcEEEEcCCCC
Q 019384 75 FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAA---GQVITGSWDKSLKCWDPRGA 132 (342)
Q Consensus 75 ~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~---~~l~sgs~D~~I~iWd~~~~ 132 (342)
++.+.. -.+..++|+|+. ..|..-+.|.+||+||+...
T Consensus 160 ftss~~--------------------ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 160 FTSSTS--------------------LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eccCCc--------------------eeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 443311 124567788854 45666678899999997643
No 413
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.67 E-value=4.3 Score=23.56 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=21.3
Q ss_pred CCCCeE-EEecCCCeEEEEeCCCceeeeccC
Q 019384 253 PIYGTF-ATGGCDGFVNVWDGNNKKRLYQYS 282 (342)
Q Consensus 253 p~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~~ 282 (342)
|++++| ++...+++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 466655 445568899999998877665544
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=83.79 E-value=31 Score=30.68 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=93.5
Q ss_pred cCCceEEEEEeCCCCeEEEecCCcEEEEEecc-Cc-ee--ecccC---CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC
Q 019384 59 HGGPVLDCCFHDDSSGFSASADHTVRRLVFSH-GK-ED--ILGKH---DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131 (342)
Q Consensus 59 h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~-~~-~~--~~~~h---~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~ 131 (342)
-...+.++.|.++..-+..+..+.| +.... ++ -. ..... .-...++.|.. ...++. +..+.|..-. +.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g~ll~T~-Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPGLLLHTT-DG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETTEEEEES-ST
T ss_pred CCCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCceEEEec-CC
Confidence 3557889999866666666666754 22222 11 11 11111 12356777764 334444 4455433221 22
Q ss_pred CCCcceeeee-ecCCCCcEEEEec-cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384 132 ASGQERTLVG-TYPQPERVYSLSL-VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE 209 (342)
Q Consensus 132 ~~~~~~~~~~-~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~ 209 (342)
+.. -..+. ....+.....+.. .++....++..+. +|--.++-..-+.........+..+...++|.++++++..
T Consensus 90 G~t--W~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 GKT--WERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TSS---EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCC--cEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 211 11111 0111222222222 2333333443332 3333322221111111222345566678899877777654
Q ss_pred CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEe-CCCceeeec----cCCC
Q 019384 210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWD-GNNKKRLYQ----YSKY 284 (342)
Q Consensus 210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd-~~~~~~~~~----~~~~ 284 (342)
. +. .-||.... . ...|.... ...|.++.|.|++...+.+ ..|.|+.=+ ..+...... ...-
T Consensus 166 ~-~~-~s~~~G~~----~--w~~~~r~~-----~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~ 231 (302)
T PF14870_consen 166 N-FY-SSWDPGQT----T--WQPHNRNS-----SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTN 231 (302)
T ss_dssp S-EE-EEE-TT-S----S---EEEE--S-----SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS-
T ss_pred c-EE-EEecCCCc----c--ceEEccCc-----cceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccC
Confidence 4 32 22443211 1 12232211 1258999999997765544 788888877 233222221 1112
Q ss_pred CcceEEEEECCCCCEEEEEEe
Q 019384 285 PTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 285 ~~~V~~v~~spdg~~las~s~ 305 (342)
.-.+.+++|.+++...|+|++
T Consensus 232 ~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 232 GYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp -S-EEEEEESSSS-EEEEEST
T ss_pred ceeeEEEEecCCCCEEEEeCC
Confidence 224899999999998887765
No 415
>PHA02713 hypothetical protein; Provisional
Probab=83.19 E-value=48 Score=32.40 Aligned_cols=52 Identities=4% Similarity=0.081 Sum_probs=30.9
Q ss_pred CCCeEEEecCC------CeEEEEeCCC-c--eeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 254 IYGTFATGGCD------GFVNVWDGNN-K--KRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 254 ~~~~l~sgs~D------g~I~iWd~~~-~--~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
++..++.|+.+ ..+..||.++ . ..+..+.........++ -+|++.++|+.++
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~ 523 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYES 523 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecc
Confidence 46777778764 2477899876 3 33444443333333333 3889888888544
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.00 E-value=6.9 Score=32.64 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=37.0
Q ss_pred CeEEEecCCCeEEEEeCCC--ceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 256 GTFATGGCDGFVNVWDGNN--KKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 256 ~~l~sgs~Dg~I~iWd~~~--~~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
+.|..+...+.|.+|+++. ...+.++..- +.|..+.++.-|.||++=-.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 5555556677899999883 3445666654 78999999999999998654
No 417
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.69 E-value=55 Score=32.76 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=64.1
Q ss_pred CeEEEEEcCCeEEEEeCCCCC-----------Ccccc------cccccceeeEEEEEe--eCCceEEEEccCCeEEEEEe
Q 019384 157 NRLVVATAGRHVNVYDLRNMS-----------QPEQR------RESSLKYQTRCVRCY--PNGTGYALSSVEGRVAMEFF 217 (342)
Q Consensus 157 ~~~~~~s~d~~v~iwd~~~~~-----------~~~~~------~~~~~~~~~~~v~~~--~~~~~~~~~s~~~~~~i~~~ 217 (342)
+.++.|..||.|.+|...... ....+ ....+......++++ .....+|+++....|.+..+
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 367888999999999753210 00000 001112234567777 67778888888888888666
Q ss_pred echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC------CeEEEecCCCeEEEEeC
Q 019384 218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY------GTFATGGCDGFVNVWDG 272 (342)
Q Consensus 218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~------~~l~sgs~Dg~I~iWd~ 272 (342)
..... +.+....| .+.+.|.+|+|-++. .+|++++=.|.+.+|++
T Consensus 195 ~l~~~---r~~~~~s~-------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDE---RFYHVPSH-------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecccc---cccccccc-------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66321 11111111 123468899997653 27888889999888877
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.50 E-value=64 Score=33.91 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=44.6
Q ss_pred eeeEEEEcCCCCeEEEecCCCeEEEEeCCCc--eeeeccCC-CCcceEEEEECCCCCEEEEEEe
Q 019384 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNK--KRLYQYSK-YPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~--~~~~~~~~-~~~~V~~v~~spdg~~las~s~ 305 (342)
.+.|++|+|.|..++.|-..|++.-|...-. +.+....- -..+|.+|.|--.-.+|++-+.
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEecc
Confidence 5789999999999999999999999865432 22222111 1468999999877777776553
No 419
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=81.42 E-value=30 Score=31.22 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=53.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--eeeee-----ecCCceEEEEEeCC----CCeEEEec-C--------
Q 019384 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LRGEF-----MHGGPVLDCCFHDD----SSGFSASA-D-------- 80 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~~~~-----~h~~~V~~~~~~~~----~~~~s~s~-D-------- 80 (342)
.-++++|.|||+.|++ -..|+|++++..... ..... ........+++.|+ +.++.+.. .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999987775 459999999943322 11111 12345788999863 45543332 1
Q ss_pred CcEEEEEeccC--c----eeec---cc---CCcceeEEEEeCCCCEEEEeeCCC
Q 019384 81 HTVRRLVFSHG--K----EDIL---GK---HDAPVRCIEYSYAAGQVITGSWDK 122 (342)
Q Consensus 81 ~~i~~w~~~~~--~----~~~~---~~---h~~~V~~~~~~~~~~~l~sgs~D~ 122 (342)
..|..|..... . ..++ .. ..-.-..++|.||+.+.++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 13444444433 1 1111 11 122345699999996656555433
No 420
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.34 E-value=8.2 Score=22.30 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=19.9
Q ss_pred CCCCeEEE-EeCCCcEEEEECCCceeeeee
Q 019384 29 NHSDHLLV-SSWDKSVRLYDASANVLRGEF 57 (342)
Q Consensus 29 ~~~~~l~s-~s~Dgti~vwd~~~~~~~~~~ 57 (342)
|++++|.. .-.+++|.++|..+.+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i 30 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI 30 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 56666655 446799999999776655443
No 421
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=81.25 E-value=35 Score=29.45 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=54.4
Q ss_pred CeEEEEEcCCCCeEEEEe-CC--CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEe-cCCcEEEEE-eccCce--
Q 019384 21 GISNLRFSNHSDHLLVSS-WD--KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAS-ADHTVRRLV-FSHGKE-- 93 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s-~D--gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s-~D~~i~~w~-~~~~~~-- 93 (342)
.+.+.+.|++++.+|... .+ ..+.++.......... -...+..-.|.+++.+.+.. .+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 788999999999887655 33 4444444333221111 23356666777666655443 344444443 222221
Q ss_pred eecc--cCCcceeEEEEeCCCCEEEEee
Q 019384 94 DILG--KHDAPVRCIEYSYAAGQVITGS 119 (342)
Q Consensus 94 ~~~~--~h~~~V~~~~~~~~~~~l~sgs 119 (342)
..+. .-...|..++++|||.+++--.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEE
Confidence 1111 1112899999999999876443
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.84 E-value=53 Score=33.13 Aligned_cols=90 Identities=14% Similarity=0.250 Sum_probs=51.0
Q ss_pred ccceeeEEEEEeeCCceEEEEccCCeEEEEE---eechhhhhcccceeeeEEe--c--CCCCceeeeeeEEEEcCC---C
Q 019384 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEF---FDLSEASQAKKYAFKCHRK--S--EAGRDIVYPVNAIAFHPI---Y 255 (342)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~---~d~~~~~~~~~~~~~~h~~--~--~~~~~~~~~v~~v~~sp~---~ 255 (342)
+..+.+..+.++|+|..+++.+..+-..+.+ |-.........-.+.+-.- . .......-.|..+.|||. +
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 3446678888999999988887766544333 1100000000001111000 0 000111235888999997 4
Q ss_pred CeEEEecCCCeEEEEeCCCc
Q 019384 256 GTFATGGCDGFVNVWDGNNK 275 (342)
Q Consensus 256 ~~l~sgs~Dg~I~iWd~~~~ 275 (342)
..|+.=..|+++|+||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 68888888999999998753
No 423
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=80.54 E-value=11 Score=26.65 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=29.9
Q ss_pred EecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384 260 TGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 260 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~ 307 (342)
.+..+|.+.-||..+++...-+.+ -..-+.|++|||+.+|+.+-...
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGG
T ss_pred cCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccC
Confidence 345678999999998764222221 12358999999999999876554
No 424
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.40 E-value=4.6 Score=39.26 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=27.1
Q ss_pred CCCeEEEEEcC----CCCeEEEEeCCCcEEEEECCCceeee
Q 019384 19 SDGISNLRFSN----HSDHLLVSSWDKSVRLYDASANVLRG 55 (342)
Q Consensus 19 ~~~V~~l~fs~----~~~~l~s~s~Dgti~vwd~~~~~~~~ 55 (342)
...+.+++.+. +..+|++-+.|+++|+||+.++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 45566677776 77899999999999999999887644
No 425
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.22 E-value=42 Score=32.06 Aligned_cols=89 Identities=17% Similarity=0.294 Sum_probs=51.7
Q ss_pred eeeEEEEEeeCCceEEEEccCCeEEEEE---eechhhhhcccceeeeEE-----ecCCCCceeeeeeEEEEcCCC---Ce
Q 019384 189 YQTRCVRCYPNGTGYALSSVEGRVAMEF---FDLSEASQAKKYAFKCHR-----KSEAGRDIVYPVNAIAFHPIY---GT 257 (342)
Q Consensus 189 ~~~~~v~~~~~~~~~~~~s~~~~~~i~~---~d~~~~~~~~~~~~~~h~-----~~~~~~~~~~~v~~v~~sp~~---~~ 257 (342)
+.+..+..++.|..++..+.+|-+.+++ |--..-....+-...|.. .......+ -.+..++|||+. ..
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~-ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTS-LTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCc-eeeeeccccCCccCCce
Confidence 4456677889999999988888776655 432110000000011100 00000011 136678999986 56
Q ss_pred EEEecCCCeEEEEeCCCceee
Q 019384 258 FATGGCDGFVNVWDGNNKKRL 278 (342)
Q Consensus 258 l~sgs~Dg~I~iWd~~~~~~~ 278 (342)
|..=+.|..||+||......+
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 777788999999998765444
No 426
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=78.62 E-value=5 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=20.4
Q ss_pred CeEEEecCCCeEEEEeCCCceeeec
Q 019384 256 GTFATGGCDGFVNVWDGNNKKRLYQ 280 (342)
Q Consensus 256 ~~l~sgs~Dg~I~iWd~~~~~~~~~ 280 (342)
..++.++.+|.++.+|.++++.+.+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3577888899999999998877654
No 427
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.08 E-value=59 Score=30.24 Aligned_cols=107 Identities=10% Similarity=0.051 Sum_probs=63.3
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-----eeeeeecC---CceEEEEEeCCCCeEEEecCCcEEEEEec
Q 019384 18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-----LRGEFMHG---GPVLDCCFHDDSSGFSASADHTVRRLVFS 89 (342)
Q Consensus 18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-----~~~~~~h~---~~V~~~~~~~~~~~~s~s~D~~i~~w~~~ 89 (342)
....++++.|.+++..++++ .+|.+..=+ ..+. -....... ..+.++.|.+++.++.++..|.+....-.
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~ 356 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDG 356 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCC
Confidence 35678899999998877655 566644432 2221 11111111 24888999988899999999977544322
Q ss_pred cCceeec---ccCCcceeEEEEeCCCCEEEEeeCCCcEEEE
Q 019384 90 HGKEDIL---GKHDAPVRCIEYSYAAGQVITGSWDKSLKCW 127 (342)
Q Consensus 90 ~~~~~~~---~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iW 127 (342)
....... ..-....+.+.|.++++.+++ +.+|.|-.|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 2121221 122345778888766555554 567776554
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=77.98 E-value=48 Score=31.59 Aligned_cols=135 Identities=11% Similarity=0.066 Sum_probs=70.4
Q ss_pred EEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCC--------CCeEEEecCCcEEEEEeccCc-eeecccCC-----c
Q 019384 36 VSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD--------SSGFSASADHTVRRLVFSHGK-EDILGKHD-----A 101 (342)
Q Consensus 36 s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~--------~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~-----~ 101 (342)
.|+.-..+.=-|+..|+...+..-...| -+.|.|. .+.+.|-.+..|..-|.+-.. ........ .
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn 563 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKN 563 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccc
Confidence 3444455555566666666655434444 3455443 234556666666555543322 11111111 2
Q ss_pred ceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384 102 PVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN 175 (342)
Q Consensus 102 ~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~ 175 (342)
...|..-. ...+++.+|.-|-||+||.-... ..+.+.........+.++.+|+.++ |+....+.+-|++-
T Consensus 564 ~Fss~~tT-esGyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~il-aTCk~yllL~d~~i 633 (776)
T COG5167 564 KFSSGMTT-ESGYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKHIL-ATCKNYLLLTDVPI 633 (776)
T ss_pred cccccccc-cCceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcEEE-EeecceEEEEeccc
Confidence 22233322 35689999999999999942111 1122333323333445666676544 55566888888764
No 429
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=77.63 E-value=54 Score=29.59 Aligned_cols=195 Identities=19% Similarity=0.249 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCeEEEEe--CCCcEEEEECCCceeeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEecc-Ccee---
Q 019384 22 ISNLRFSNHSDHLLVSS--WDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSH-GKED--- 94 (342)
Q Consensus 22 V~~l~fs~~~~~l~s~s--~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~-~~~~--- 94 (342)
.+..++|.|++.++..- =-.+|.|-|+..++...++.-.+... .|. .+..+.+.|.||.+....++. +++.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~--iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL--IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE--EEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE--EEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 34578888888876542 23578888988888776654433322 232 344567889999988888763 3321
Q ss_pred --ecccCCcc-eeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec----------CCCCcEEEEeccCCeEEE
Q 019384 95 --ILGKHDAP-VRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY----------PQPERVYSLSLVGNRLVV 161 (342)
Q Consensus 95 --~~~~h~~~-V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~----------~~~~~v~~~s~~~~~~~~ 161 (342)
.+..-.++ +..-++...+..++=-+.+|.|.--|+..........+... ......+++....+++.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 12111122 22334444455555467788887777653321111111000 011234444443333322
Q ss_pred -EEcC--C-------eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE--ccCCeEEEEEeechhhh
Q 019384 162 -ATAG--R-------HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS--SVEGRVAMEFFDLSEAS 223 (342)
Q Consensus 162 -~s~d--~-------~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--s~~~~~~i~~~d~~~~~ 223 (342)
--.+ + .|-++|+.+.+... ..++...+.++.++-+.+-++.+ ..++. +.+||..+.+
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~---Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~--l~v~D~~tGk 323 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVA---RIPLEHPIDSIAVSQDDKPLLYALSAGDGT--LDVYDAATGK 323 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEE---EEEEEEEESEEEEESSSS-EEEEEETTTTE--EEEEETTT--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEE---EEeCCCccceEEEccCCCcEEEEEcCCCCe--EEEEeCcCCc
Confidence 2221 1 47777887753321 12333455678888776655443 33454 4569986553
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=77.00 E-value=60 Score=29.73 Aligned_cols=100 Identities=7% Similarity=-0.006 Sum_probs=55.6
Q ss_pred CCCeEEEEEcCCCCeEEEEe-----------CCC-cEEEEECCC--ce--eeeeee-cCCceEEEEEeCCCCeEEEecCC
Q 019384 19 SDGISNLRFSNHSDHLLVSS-----------WDK-SVRLYDASA--NV--LRGEFM-HGGPVLDCCFHDDSSGFSASADH 81 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s-----------~Dg-ti~vwd~~~--~~--~~~~~~-h~~~V~~~~~~~~~~~~s~s~D~ 81 (342)
-....+++|+++|+++++-. ..+ .|.+++-.+ ++ ....+. .-....++++.+++ ++.++...
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~ 91 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPD 91 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCe
Confidence 35667899999999887643 223 677776532 32 122222 23345788887777 66655444
Q ss_pred cEEEEEeccC-----c-eeecc---c----CCcceeEEEEeCCCCEEEEee
Q 019384 82 TVRRLVFSHG-----K-EDILG---K----HDAPVRCIEYSYAAGQVITGS 119 (342)
Q Consensus 82 ~i~~w~~~~~-----~-~~~~~---~----h~~~V~~~~~~~~~~~l~sgs 119 (342)
..++.+.... + +.++. . +......++|.|||.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3333343221 1 11211 1 123477899999987655443
No 431
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=76.53 E-value=81 Score=30.98 Aligned_cols=206 Identities=16% Similarity=0.174 Sum_probs=95.1
Q ss_pred cEEEEEeccCceeecc--cCCcceeEEEEeCCCCEEEEeeCC------CcEEEEcCCCCCCcceeeeeecCCCCcEEEE-
Q 019384 82 TVRRLVFSHGKEDILG--KHDAPVRCIEYSYAAGQVITGSWD------KSLKCWDPRGASGQERTLVGTYPQPERVYSL- 152 (342)
Q Consensus 82 ~i~~w~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sgs~D------~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~- 152 (342)
.+..+|..++....+. .+...-.+++.. ++...++|+.| .++..||.+... - ..+........-..+
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W-~~~a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--W-TPVAPMNTKRSDFGVA 377 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc--e-eccCCccCccccceeE
Confidence 4667776666432221 111223344444 45667889988 356677876432 1 111111111111222
Q ss_pred eccCCeEEEEEcCC-----eEEEEeCCCCCCcccccccccceeeEEEE-EeeCCceEEEEccCCeE----EEEEeechhh
Q 019384 153 SLVGNRLVVATAGR-----HVNVYDLRNMSQPEQRRESSLKYQTRCVR-CYPNGTGYALSSVEGRV----AMEFFDLSEA 222 (342)
Q Consensus 153 s~~~~~~~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~s~~~~~----~i~~~d~~~~ 222 (342)
...+...++|+.|+ .+-.||..+.+=. .. .+....-.... ..-+|...++|+.++.. .+..||..+.
T Consensus 378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~--~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT--PV-APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred EECCEEEEEeccccccccccEEEecCCCCccc--cc-CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 33455667788876 3777887654211 00 11111111222 33456666677644443 3456776544
Q ss_pred hhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC-----eEEEEeCCCce--eeeccCCCCcceEEEEECC
Q 019384 223 SQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG-----FVNVWDGNNKK--RLYQYSKYPTSIAALSFSR 295 (342)
Q Consensus 223 ~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg-----~I~iWd~~~~~--~~~~~~~~~~~V~~v~~sp 295 (342)
.....-.+..-+. .. .++ .-++..++.|+.|+ +|..||.++.+ .+..++...+.+..+ .-
T Consensus 455 ~W~~~~~M~~~R~---------~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~--~~ 521 (571)
T KOG4441|consen 455 TWTLIAPMNTRRS---------GF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV--VL 521 (571)
T ss_pred ceeecCCcccccc---------cc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE--EE
Confidence 3222211111111 01 111 12577788898877 37888877643 222222222222222 23
Q ss_pred CCCEEEEEEecc
Q 019384 296 DGRLLAVASSYT 307 (342)
Q Consensus 296 dg~~las~s~~~ 307 (342)
+++..++|+.+.
T Consensus 522 ~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 522 GGKLYAVGGFDG 533 (571)
T ss_pred CCEEEEEecccC
Confidence 566777777443
No 432
>PHA03098 kelch-like protein; Provisional
Probab=76.37 E-value=77 Score=30.65 Aligned_cols=73 Identities=11% Similarity=-0.046 Sum_probs=38.6
Q ss_pred CCCeEEEecCCC--------eEEEEeCCCce--eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEE
Q 019384 254 IYGTFATGGCDG--------FVNVWDGNNKK--RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVR 323 (342)
Q Consensus 254 ~~~~l~sgs~Dg--------~I~iWd~~~~~--~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~ 323 (342)
++..++.|+.+. .+.+||..+.+ .+..+.........+. -++++++.|+...-. ..+.+.+|
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~------~~~~v~~y 508 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEY------YINEIEVY 508 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCc------ccceeEEE
Confidence 466677776432 38889987643 2222211111112222 377877777644211 13467788
Q ss_pred EccCCccccCC
Q 019384 324 SVNEIEVKPKP 334 (342)
Q Consensus 324 ~~~~~~~~~~~ 334 (342)
..+...|..-+
T Consensus 509 d~~~~~W~~~~ 519 (534)
T PHA03098 509 DDKTNTWTLFC 519 (534)
T ss_pred eCCCCEEEecC
Confidence 77766676544
No 433
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=76.18 E-value=80 Score=30.75 Aligned_cols=129 Identities=12% Similarity=0.130 Sum_probs=63.6
Q ss_pred eEEEEEcCCeEEEEeCCCCCCcccc----c--c--cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccce
Q 019384 158 RLVVATAGRHVNVYDLRNMSQPEQR----R--E--SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA 229 (342)
Q Consensus 158 ~~~~~s~d~~v~iwd~~~~~~~~~~----~--~--~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~ 229 (342)
.+++.--.+.|.+|.+--......+ . + .+++.-.-.+.|||....+++-.... +.+ +++.+.+...-+..
T Consensus 74 aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV-~~sV~~d~srVkaD 151 (671)
T PF15390_consen 74 ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSV-LPSVHCDSSRVKAD 151 (671)
T ss_pred ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeE-eeeeeeCCceEEEe
Confidence 4566666778999987521110000 0 0 01111223455888887665554332 222 45543322211111
Q ss_pred eeeEEecCCCCceeeeeeEEEEcCCCCeEEEec-CCCeEEEEeCCCceee----eccCCCCcceEEEEECCCCC
Q 019384 230 FKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG-CDGFVNVWDGNNKKRL----YQYSKYPTSIAALSFSRDGR 298 (342)
Q Consensus 230 ~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iWd~~~~~~~----~~~~~~~~~V~~v~~spdg~ 298 (342)
+.. .+-|.|.+|.+||+.|+.+- ..=.-+|||-..+... +....-.+.|.++.-.-|.+
T Consensus 152 i~~----------~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsq 215 (671)
T PF15390_consen 152 IKT----------SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQ 215 (671)
T ss_pred ccC----------CceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccce
Confidence 111 12488999999999876542 2335678985432211 11112334566666655544
No 434
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=75.13 E-value=7.7 Score=38.35 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=44.4
Q ss_pred CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384 100 DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL 173 (342)
Q Consensus 100 ~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~ 173 (342)
...+.++.-+|.++.+++++.||.|++++.-.... ..+-.. ...-..+.+..+.+++++.|+.+.-|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q---ski~~~--~~p~~nlv~tnhgl~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ---SKICEE--AKPKENLVFTNHGLVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccch---hhhhhh--cCCccceeeeccceEEEeccchhheeec
Confidence 34567788889999999999999999998643211 011111 1112234444556888888888777754
No 435
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=74.52 E-value=32 Score=27.68 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=24.0
Q ss_pred cceeEEEEeCCC------CEEEEeeCCCcEEEEcCC
Q 019384 101 APVRCIEYSYAA------GQVITGSWDKSLKCWDPR 130 (342)
Q Consensus 101 ~~V~~~~~~~~~------~~l~sgs~D~~I~iWd~~ 130 (342)
..|.+++|+|.| -.|+..+.++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999943 367888999999999753
No 436
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.97 E-value=56 Score=27.90 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=44.6
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE-CCCCCEEEEEEeccc
Q 019384 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF-SRDGRLLAVASSYTF 308 (342)
Q Consensus 250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~-spdg~~las~s~~~~ 308 (342)
+...+|..+++.-..++|...|..+++.+.+++--...|+|++| .|+=..|.+.....+
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~~ 277 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAKF 277 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhcc
Confidence 33446777777778889999999999999888777889999999 454455555555443
No 437
>PRK10115 protease 2; Provisional
Probab=73.84 E-value=1e+02 Score=31.00 Aligned_cols=109 Identities=9% Similarity=-0.009 Sum_probs=53.7
Q ss_pred eEEEEEeCCCCeEEEec--CC----cEEEEEeccCce--eecccCCcceeEEEEeCCCCEEEEeeCC------CcEEEEc
Q 019384 63 VLDCCFHDDSSGFSASA--DH----TVRRLVFSHGKE--DILGKHDAPVRCIEYSYAAGQVITGSWD------KSLKCWD 128 (342)
Q Consensus 63 V~~~~~~~~~~~~s~s~--D~----~i~~w~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~sgs~D------~~I~iWd 128 (342)
+..+.+++++..+.-+. +| .+++.++.++.. ..+.+ .-..++|.+|++.|+-...| ..|.+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 45667788877653333 33 366777766541 22222 11468999988766443332 3567777
Q ss_pred CCCCCCcceeeeeecCCCCcEEEE-eccCCeEEEEEcC---CeEEEEeCC
Q 019384 129 PRGASGQERTLVGTYPQPERVYSL-SLVGNRLVVATAG---RHVNVYDLR 174 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~v~~~-s~~~~~~~~~s~d---~~v~iwd~~ 174 (342)
+.++......++........+... +.++..++..+.+ +.+.+++..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 765422222222211111111112 2245544444333 368888853
No 438
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=73.28 E-value=82 Score=29.53 Aligned_cols=172 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred EEeccCceeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc------CCe
Q 019384 86 LVFSHGKEDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV------GNR 158 (342)
Q Consensus 86 w~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~------~~~ 158 (342)
|...-+....+....=.|-.+.-.+++ ++|+.||..|.+||+++..........+-..+....|..+... .+.
T Consensus 10 Wst~~~~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~ 89 (418)
T PF14727_consen 10 WSTKCGENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDL 89 (418)
T ss_pred eeccCCCCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcc
Q ss_pred EEEEEcCCeEEEEeCCCCCCc---------ccccccccceeeEEEEEeeCCce-----EEEEccCCeEEEEEeechhhhh
Q 019384 159 LVVATAGRHVNVYDLRNMSQP---------EQRRESSLKYQTRCVRCYPNGTG-----YALSSVEGRVAMEFFDLSEASQ 224 (342)
Q Consensus 159 ~~~~s~d~~v~iwd~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~-----~~~~s~~~~~~i~~~d~~~~~~ 224 (342)
.++.---+.+.+|.+...... ....++.+......+.+-|=|.. +++=+.||...+ |+.....-
T Consensus 90 ~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~--feqe~~~f 167 (418)
T PF14727_consen 90 QLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSF--FEQESFAF 167 (418)
T ss_pred eEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEE--EeCCcEEE
Q ss_pred cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEe
Q 019384 225 AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWD 271 (342)
Q Consensus 225 ~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd 271 (342)
.+.......+. .++|.|....+++++.+..+..|.
T Consensus 168 ~~~lp~~llPg------------Pl~Y~~~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 168 SRFLPDFLLPG------------PLCYCPRTDSFVTASSSWTLECYK 202 (418)
T ss_pred EEEcCCCCCCc------------CeEEeecCCEEEEecCceeEEEec
No 439
>PRK10115 protease 2; Provisional
Probab=73.25 E-value=1.1e+02 Score=30.90 Aligned_cols=194 Identities=9% Similarity=0.081 Sum_probs=92.2
Q ss_pred CeEEEEEcCCCCeEEEE-----eCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecC------CcEEEEEe
Q 019384 21 GISNLRFSNHSDHLLVS-----SWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASAD------HTVRRLVF 88 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~-----s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D------~~i~~w~~ 88 (342)
.+..+.+|||+++|+-+ +...+|++-|+.++..+.... .+.-..++|.+++. ++-...+ ..+..+++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 46678999999988743 233568888887775322211 11114588985554 4433332 24666677
Q ss_pred ccCc---eeecccCCccee-EEEEeCCCCEEEE---eeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEE
Q 019384 89 SHGK---EDILGKHDAPVR-CIEYSYAAGQVIT---GSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVV 161 (342)
Q Consensus 89 ~~~~---~~~~~~h~~~V~-~~~~~~~~~~l~s---gs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~ 161 (342)
.++. ..++........ .+..+.+++.++. ...++.+.+++...........+ .... .....+...++.+..
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~ly~ 284 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL-PRRK-DHEYSLDHYQHRFYL 284 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE-ECCC-CCEEEEEeCCCEEEE
Confidence 7662 233443222333 3333446665533 23345788888532222111111 1111 112233333344444
Q ss_pred EEcCC--e--EEEEeCCCCCCcccccccc-cceeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384 162 ATAGR--H--VNVYDLRNMSQPEQRRESS-LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDL 219 (342)
Q Consensus 162 ~s~d~--~--v~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~ 219 (342)
.+..+ . |...++.+...- +..... -...+..+.+. .+..++....++...+++++.
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcC
Confidence 44332 2 333344321110 111111 12234555555 334455556677777777775
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=73.05 E-value=81 Score=31.66 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=70.7
Q ss_pred CCCeEEEEEcC--CCCeEEEEeCCCcEEEEECCC-------c----e---------eeeeeecCCceEEEEEe--CCCCe
Q 019384 19 SDGISNLRFSN--HSDHLLVSSWDKSVRLYDASA-------N----V---------LRGEFMHGGPVLDCCFH--DDSSG 74 (342)
Q Consensus 19 ~~~V~~l~fs~--~~~~l~s~s~Dgti~vwd~~~-------~----~---------~~~~~~h~~~V~~~~~~--~~~~~ 74 (342)
...|+.+.... +...|+.+..||.|.+|.+.. . . ..-...-....+++++. ...++
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 34566665544 456789999999999998631 0 0 00111234578889987 66666
Q ss_pred EEEec-CCcEEEEEeccCceee----cccCCcceeEEEEeCCC---C---EEEEeeCCCcEEEEcC
Q 019384 75 FSASA-DHTVRRLVFSHGKEDI----LGKHDAPVRCIEYSYAA---G---QVITGSWDKSLKCWDP 129 (342)
Q Consensus 75 ~s~s~-D~~i~~w~~~~~~~~~----~~~h~~~V~~~~~~~~~---~---~l~sgs~D~~I~iWd~ 129 (342)
+++|. ...|.++-+.....+. -..|...|-+|+|.++. . .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65554 4467777655432211 12355678899998743 2 6788999998888776
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.85 E-value=7.6 Score=37.76 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=25.6
Q ss_pred eeEEEEcC----CCCeEEEecCCCeEEEEeCCCceeee
Q 019384 246 VNAIAFHP----IYGTFATGGCDGFVNVWDGNNKKRLY 279 (342)
Q Consensus 246 v~~v~~sp----~~~~l~sgs~Dg~I~iWd~~~~~~~~ 279 (342)
+.+++.++ +..+|++-+.|+++|+||+.++.++.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 34445555 56789999999999999999988844
No 442
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.22 E-value=80 Score=27.81 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=53.4
Q ss_pred CcEEEEECCCceeeeee-ecCCceEEEEEeCCCCeEEEe-------cCCcEEEEEeccCceeeccc-----CCcceeEEE
Q 019384 41 KSVRLYDASANVLRGEF-MHGGPVLDCCFHDDSSGFSAS-------ADHTVRRLVFSHGKEDILGK-----HDAPVRCIE 107 (342)
Q Consensus 41 gti~vwd~~~~~~~~~~-~h~~~V~~~~~~~~~~~~s~s-------~D~~i~~w~~~~~~~~~~~~-----h~~~V~~~~ 107 (342)
..|.+||..+......- +-.+.|.++.|..+.+++.++ ....+..|++.+.....+.+ -.++|..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 35899998776544332 356789999998666665444 23357788887776544433 126677776
Q ss_pred EeC-CCC-EEEEee---CCCcEEEEc
Q 019384 108 YSY-AAG-QVITGS---WDKSLKCWD 128 (342)
Q Consensus 108 ~~~-~~~-~l~sgs---~D~~I~iWd 128 (342)
+.. |.. ..+.|. .+..|..||
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEc
Confidence 643 333 334433 223577776
No 443
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=66.08 E-value=1.2e+02 Score=28.43 Aligned_cols=154 Identities=20% Similarity=0.255 Sum_probs=78.2
Q ss_pred eecCCCCcEEEEeccCCeE--EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCC--ceEEEEccCCeEEEEE
Q 019384 141 GTYPQPERVYSLSLVGNRL--VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG--TGYALSSVEGRVAMEF 216 (342)
Q Consensus 141 ~~~~~~~~v~~~s~~~~~~--~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~s~~~~~~i~~ 216 (342)
+...-..++.++-+.++.. ++--+..-+.+.|+.+.+.+...-+..+++ -+--.||-| ..+-+|..++.+++.+
T Consensus 422 tGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPG--fS~YLHpigen~~lGvG~~~g~vKiSL 499 (603)
T COG4880 422 TGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPG--FSEYLHPIGENRLLGVGAYQGGVKISL 499 (603)
T ss_pred eccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCC--chhhccccCCCcEEEeecccCCceEEE
Confidence 3334456777888877744 444444458888998876653322222221 111235544 3455667789999999
Q ss_pred eechhhhhccc---ceeeeEEecCCCCceeeeeeEEEEcCCCCe-EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEE
Q 019384 217 FDLSEASQAKK---YAFKCHRKSEAGRDIVYPVNAIAFHPIYGT-FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALS 292 (342)
Q Consensus 217 ~d~~~~~~~~~---~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~-l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~ 292 (342)
||.++-..++. +.+...-. ....+ =.+..+.|.-+. +.-+...|. |+.++++..+..-..|...+-..-
T Consensus 500 FdiSdl~~PkEv~~y~l~~~ws-pvf~d----hHAFl~d~~~~ifFlPay~~gy--if~iedg~kl~k~~e~k~na~RA~ 572 (603)
T COG4880 500 FDISDLAAPKEVSNYTLSNAWS-PVFYD----HHAFLYDPEAEIFFLPAYLGGY--IFFIEDGSKLRKRAERKLNADRAF 572 (603)
T ss_pred EeccCCCCchhhhheehhhhcc-hhhhc----cceeecCCcccEEEecccCccE--EEEEecCceeeehhhhcccceeeE
Confidence 99876443332 22221000 00000 012334444332 334555666 444455544443335656666666
Q ss_pred ECCCCCEEEEE
Q 019384 293 FSRDGRLLAVA 303 (342)
Q Consensus 293 ~spdg~~las~ 303 (342)
|-.|--|++.+
T Consensus 573 fi~dylY~vg~ 583 (603)
T COG4880 573 FIKDYLYLVGG 583 (603)
T ss_pred EecceEEEecc
Confidence 66666666543
No 444
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=65.60 E-value=52 Score=30.89 Aligned_cols=145 Identities=16% Similarity=0.085 Sum_probs=72.9
Q ss_pred EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccce----eeE-EEEEeeCCceEEEEccCCeEEEEEeechhhhhcc
Q 019384 152 LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKY----QTR-CVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK 226 (342)
Q Consensus 152 ~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~----~~~-~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~ 226 (342)
+.++++.+..-+. .++.++++.+.....++.....+. .++ .+.....+..+.+...||-+. .+||.+...+..
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs-QWFdvr~~~~p~ 305 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS-QWFDVRRDGQPH 305 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee-eeeeeecCCCCc
Confidence 5556666655544 678888887643322222111111 111 111233455567777777766 467776543322
Q ss_pred cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 227 KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 227 ~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
.. |.....-.. .++..+.--.+.+-+++=...|++.++.....+.+-.-. --..+..+++||.+.+|++-..
T Consensus 306 l~----h~R~f~l~p--a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e~~ 377 (733)
T COG4590 306 LN----HIRNFKLAP--AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSEDQ 377 (733)
T ss_pred ce----eeeccccCc--ccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchheeecC
Confidence 21 111100000 022222222234457777888888888655443332111 1124678999999999986543
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=64.19 E-value=1.1e+02 Score=27.58 Aligned_cols=157 Identities=13% Similarity=0.003 Sum_probs=0.0
Q ss_pred ccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEecc
Q 019384 12 RELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSH 90 (342)
Q Consensus 12 ~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~ 90 (342)
+.+..+....++++.+.+++.+++++..-.-.+.+|-... -......-...+.++.+.+++.++.++..+.+++-..+.
T Consensus 165 ~~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~ 244 (334)
T PRK13684 165 EALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDD 244 (334)
T ss_pred eeCcCCCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCC
Q ss_pred Cc-eeecccC----CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee-cCCCCcEEEEec-cCCeEEEEE
Q 019384 91 GK-EDILGKH----DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT-YPQPERVYSLSL-VGNRLVVAT 163 (342)
Q Consensus 91 ~~-~~~~~~h----~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~v~~~s~-~~~~~~~~s 163 (342)
+. ......+ ...+..+.+.+++..++.+..-..++--| .+..-..... ...+.....+.+ +++..+.++
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d----~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G 320 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKD----GGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG 320 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCC----CCCCCeECCcCCCCCcceEEEEEeCCCceEEEC
Q ss_pred cCCeEEEEe
Q 019384 164 AGRHVNVYD 172 (342)
Q Consensus 164 ~d~~v~iwd 172 (342)
..|.|.-++
T Consensus 321 ~~G~il~~~ 329 (334)
T PRK13684 321 QRGVLLRYV 329 (334)
T ss_pred CCceEEEec
No 446
>PHA03098 kelch-like protein; Provisional
Probab=63.88 E-value=1.4e+02 Score=28.76 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=15.2
Q ss_pred CCCeEEEecCC-----CeEEEEeCCCc
Q 019384 254 IYGTFATGGCD-----GFVNVWDGNNK 275 (342)
Q Consensus 254 ~~~~l~sgs~D-----g~I~iWd~~~~ 275 (342)
++..++.|+.+ ..|.+||.++.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 56777777654 46888887754
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=62.91 E-value=68 Score=24.68 Aligned_cols=107 Identities=7% Similarity=-0.028 Sum_probs=66.1
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEECCCc--------eeeeeeecCCceEEEEEe---C--CCCeEEEecCCcEEEEEec
Q 019384 23 SNLRFSNHSDHLLVSSWDKSVRLYDASAN--------VLRGEFMHGGPVLDCCFH---D--DSSGFSASADHTVRRLVFS 89 (342)
Q Consensus 23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--------~~~~~~~h~~~V~~~~~~---~--~~~~~s~s~D~~i~~w~~~ 89 (342)
..-+|+....-|+.+..-|.|-|++.... ..+.++.-+..|++++-. + ..-.+.-+....+..||+.
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 44577877788988889999999997532 234555667788887643 2 2234555566777889987
Q ss_pred cCceeecccCCcceeEEEEeCC---CCEEEEeeCCCcEEEEcC
Q 019384 90 HGKEDILGKHDAPVRCIEYSYA---AGQVITGSWDKSLKCWDP 129 (342)
Q Consensus 90 ~~~~~~~~~h~~~V~~~~~~~~---~~~l~sgs~D~~I~iWd~ 129 (342)
......+..-.+.|+++.+-.- ..-++-.+....|.-+|.
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 7655444444566777766421 122333333455555554
No 448
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=62.80 E-value=16 Score=20.89 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEecCCCeEEEEeCCCceeeeccC
Q 019384 258 FATGGCDGFVNVWDGNNKKRLYQYS 282 (342)
Q Consensus 258 l~sgs~Dg~I~iWd~~~~~~~~~~~ 282 (342)
+..+..||.|+-.|.++++.+..++
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 4556899999999999998876654
No 449
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=62.74 E-value=1.3e+02 Score=27.81 Aligned_cols=235 Identities=13% Similarity=0.087 Sum_probs=91.4
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeec-CCceEEEEEe--CCCCeEEEec----C----------------
Q 019384 24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH-GGPVLDCCFH--DDSSGFSASA----D---------------- 80 (342)
Q Consensus 24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h-~~~V~~~~~~--~~~~~~s~s~----D---------------- 80 (342)
....+++++.|.=.....+++--|+.+.+....+.- .+-+-...|. .+.+.+.+.. |
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 345567777765454556777778877655444432 2323234442 3444443321 1
Q ss_pred ---CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEE----eeCCCc-EEEEcCCCCCCcceeeeeecCCCCcEE--
Q 019384 81 ---HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVIT----GSWDKS-LKCWDPRGASGQERTLVGTYPQPERVY-- 150 (342)
Q Consensus 81 ---~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s----gs~D~~-I~iWd~~~~~~~~~~~~~~~~~~~~v~-- 150 (342)
..|...++.+++...+-.-+.-+.-+.|+|....++. |-+|.. -|||-+++..... ..+... ....+.
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v~~~-~~~e~~gH 242 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKVHRR-MEGESVGH 242 (386)
T ss_dssp ---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS----TTEEEEE
T ss_pred CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eeeecC-CCCccccc
Confidence 1122233444433332222334556888886654443 455653 4888665433221 122111 112222
Q ss_pred -EEeccCCeEEEEEc--CC---eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe-------------
Q 019384 151 -SLSLVGNRLVVATA--GR---HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR------------- 211 (342)
Q Consensus 151 -~~s~~~~~~~~~s~--d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~------------- 211 (342)
-+..+|..+...+. ++ -|.-+|+.+....... ..+ ...-+..+++++.++--+.+.-
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~---~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~ 318 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM---EMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN 318 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE---EE--SEEEEEE-TTSSEEEEEE-----------------
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE---eCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence 35566665443322 22 3556677665321100 000 0111234567776554443321
Q ss_pred -EEEEEeechhhhhcccceeeeEEecC---C---CCceeeeeeEEEEcCCCCeE-EEecCCCeEEEEe
Q 019384 212 -VAMEFFDLSEASQAKKYAFKCHRKSE---A---GRDIVYPVNAIAFHPIYGTF-ATGGCDGFVNVWD 271 (342)
Q Consensus 212 -~~i~~~d~~~~~~~~~~~~~~h~~~~---~---~~~~~~~v~~v~~sp~~~~l-~sgs~Dg~I~iWd 271 (342)
..|++++.... ....+..|.... . ...| .-..|+|||+++ .++...|...||=
T Consensus 319 ~p~i~~~~~~~~---~~~~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 319 DPWIYLFDVEAG---RFRKLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp --EEEEEETTTT---EEEEEEE-------BTTBSSTT--------EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CcEEEEeccccC---ceeeeeeccCcceeecCCCccCC----CCCccCCCCCEEEEECCCCCCccEEE
Confidence 13445555322 112233332111 0 0112 236899999976 5555677777764
No 450
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=62.01 E-value=1.5e+02 Score=28.22 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=36.2
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee--ee----eee--cCCceEEEEEeCC
Q 019384 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL--RG----EFM--HGGPVLDCCFHDD 71 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~--~~----~~~--h~~~V~~~~~~~~ 71 (342)
+.-+.|+|.||++.|++--..|+|++++..++.. .. ... -.+...+++++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 4668999999998888776679999998654321 11 111 2567789999865
No 451
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=61.70 E-value=23 Score=18.74 Aligned_cols=25 Identities=8% Similarity=0.216 Sum_probs=17.5
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEE
Q 019384 22 ISNLRFSNHSDHLLVSSWDKSVRLY 46 (342)
Q Consensus 22 V~~l~fs~~~~~l~s~s~Dgti~vw 46 (342)
...|+.+++|+.+++=+..+.|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567778788777776666766654
No 452
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=61.01 E-value=2.1e+02 Score=29.77 Aligned_cols=115 Identities=14% Similarity=0.114 Sum_probs=64.2
Q ss_pred EEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC--Cc----eEEEEccCCeEEEEEeechhh
Q 019384 149 VYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN--GT----GYALSSVEGRVAMEFFDLSEA 222 (342)
Q Consensus 149 v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~----~~~~~s~~~~~~i~~~d~~~~ 222 (342)
+.....+...++.++.++.+...++.... ..+.....+...+.|+.++|- ++ .+++|..+..+.+-.+...
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd-- 568 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD-- 568 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC--
Confidence 33344455577778877777777776543 111222234456788887764 22 4566665555444333221
Q ss_pred hhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384 223 SQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG 272 (342)
Q Consensus 223 ~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~ 272 (342)
..+.+|... .+......|-..+|--|+.+|.++..||.+..+-.
T Consensus 569 -----~~~~~~~~l-~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 569 -----LILITHEQL-SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred -----cceeeeecc-CCCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence 122333322 12222334555567667889999999999887744
No 453
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.26 E-value=2.3e+02 Score=29.99 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN 51 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~ 51 (342)
......++|+|...++|-+...|.|+++....-
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccce
Confidence 345678999999999999999999999987543
No 454
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=59.46 E-value=2.5 Score=39.50 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=80.2
Q ss_pred cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEE
Q 019384 155 VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234 (342)
Q Consensus 155 ~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~ 234 (342)
.+..++.+..+..+..||-.... ..+...+.....+++..++..+++...... .+++||.+..... ...+.+
T Consensus 45 e~~nlavaca~tiv~~YD~agq~----~le~n~tg~aldm~wDkegdvlavlAek~~-piylwd~n~eytq-qLE~gg-- 116 (615)
T KOG2247|consen 45 EGHNLAVACANTIVIYYDKAGQV----ILELNPTGKALDMAWDKEGDVLAVLAEKTG-PIYLWDVNSEYTQ-QLESGG-- 116 (615)
T ss_pred CCCceehhhhhhHHHhhhhhcce----ecccCCchhHhhhhhccccchhhhhhhcCC-CeeechhhhhhHH-HHhccC--
Confidence 34457777777777788754321 111111112223345555555444332222 4577998654221 111111
Q ss_pred ecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
.+... =+.|++.+..++.|-..|.+.|+.-...+.+-..-.|..++.++++.+.++.+.-++.
T Consensus 117 ------~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 117 ------TSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred ------cchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcH
Confidence 11111 1578998899999999999999987776666555559999999999999987765553
No 455
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=59.24 E-value=17 Score=23.11 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.9
Q ss_pred ceEEEEECCCCCEEEEEEecc
Q 019384 287 SIAALSFSRDGRLLAVASSYT 307 (342)
Q Consensus 287 ~V~~v~~spdg~~las~s~~~ 307 (342)
.++++++-|||++|++|....
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~ 22 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDN 22 (55)
T ss_pred ceEEEEECCCCcEEEEEEeec
Confidence 468899999999999998654
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=57.81 E-value=55 Score=29.50 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=37.8
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeCCCce--eeecc----CCCCcceEEEEECCC----CCEEEEEEe
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKK--RLYQY----SKYPTSIAALSFSRD----GRLLAVASS 305 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~--~~~~~----~~~~~~V~~v~~spd----g~~las~s~ 305 (342)
.++|+|.|||++|++-- .|.|++++..... .+..+ .........++|.|+ +.+.++.+.
T Consensus 4 P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp EEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred ceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence 46799999998877765 9999999933221 22222 233456799999995 665555553
No 457
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=57.41 E-value=75 Score=28.55 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=36.4
Q ss_pred EEEEcCCCCeEEEecCC------CeEEEEeCCCceeeecc-------------C--CCCcceEEEEECCCCCEEEEEEe
Q 019384 248 AIAFHPIYGTFATGGCD------GFVNVWDGNNKKRLYQY-------------S--KYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 248 ~v~~sp~~~~l~sgs~D------g~I~iWd~~~~~~~~~~-------------~--~~~~~V~~v~~spdg~~las~s~ 305 (342)
+|++.++|.++++.=.+ -.|+-++.. ++.+..+ . ....-..+|+++|||+.|.++..
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 46666677766666556 688888866 4332221 1 12346799999999996555554
No 458
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=56.52 E-value=3.1 Score=21.19 Aligned_cols=8 Identities=75% Similarity=1.240 Sum_probs=6.0
Q ss_pred EECCCCCE
Q 019384 292 SFSRDGRL 299 (342)
Q Consensus 292 ~~spdg~~ 299 (342)
.|||||++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 37888875
No 459
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=55.47 E-value=70 Score=22.46 Aligned_cols=49 Identities=31% Similarity=0.318 Sum_probs=29.7
Q ss_pred CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384 265 GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN 326 (342)
Q Consensus 265 g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~ 326 (342)
+.|..||.+.-+.+ ..+ -..-+.++++||+++|-+++... ..|.+|+..
T Consensus 36 ~~Vvyyd~~~~~~v--a~g-~~~aNGI~~s~~~k~lyVa~~~~----------~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVKVV--ASG-FSFANGIAISPDKKYLYVASSLA----------HSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeEEe--ecc-CCCCceEEEcCCCCEEEEEeccC----------CeEEEEEec
Confidence 34556665432222 122 23458999999999998888644 247777653
No 460
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=55.30 E-value=30 Score=34.52 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASA 50 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~ 50 (342)
...++++.=.|.++.+++++.||+|++|+...
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 34677888779999999999999999999753
No 461
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=54.77 E-value=49 Score=33.92 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=37.4
Q ss_pred CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384 265 GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE 327 (342)
Q Consensus 265 g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~ 327 (342)
+.|.+=|.........-..+...|.+-+|||||+.||=+.+..- ...++.|.+++|..
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~-----~~g~s~vYv~~L~t 386 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEG-----LPGKSSVYVRNLNA 386 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecC-----CCCCceEEEEehhc
Confidence 46777776643322221346778999999999999998555441 12344577777763
No 462
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=53.97 E-value=93 Score=29.51 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=40.9
Q ss_pred CCeEEEecCCCeEEEEeCCCce--e----eeccCCCCcceEEEEECCCC-CEEEEEEeccccCCC------CCCCCCcEE
Q 019384 255 YGTFATGGCDGFVNVWDGNNKK--R----LYQYSKYPTSIAALSFSRDG-RLLAVASSYTFEEGD------KPHEPDAIF 321 (342)
Q Consensus 255 ~~~l~sgs~Dg~I~iWd~~~~~--~----~~~~~~~~~~V~~v~~spdg-~~las~s~~~~~~~~------~~~~~~~~~ 321 (342)
|..|+++-..+.|+...++... . ...+.. ..+|.+|+.+||| .+.+..+..+.-+|. +...|-.|+
T Consensus 369 g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~~~~~~~~~~~~~~~~~~ 447 (454)
T TIGR03606 369 NSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQKDDGSVTNTLENPGSII 447 (454)
T ss_pred CCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCccccCCCCceeEecCCCeEE
Confidence 5677777777788877775431 1 122333 5799999999997 655555544332222 334444555
Q ss_pred EE
Q 019384 322 VR 323 (342)
Q Consensus 322 ~~ 323 (342)
++
T Consensus 448 ~~ 449 (454)
T TIGR03606 448 VF 449 (454)
T ss_pred EE
Confidence 54
No 463
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=53.77 E-value=26 Score=20.14 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=16.0
Q ss_pred CCCeEEEecCCCeEEEEeCCC
Q 019384 254 IYGTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 254 ~~~~l~sgs~Dg~I~iWd~~~ 274 (342)
.+..|..++.||.++..|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 366788899999999998764
No 464
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=53.68 E-value=1.1e+02 Score=27.05 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=39.4
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEEEe------CCCcEEEEECCCceeeeeee-----cCCceEEEEEe
Q 019384 14 LGNPPSDGISNLRFSNHSDHLLVSS------WDKSVRLYDASANVLRGEFM-----HGGPVLDCCFH 69 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~~~~~l~s~s------~Dgti~vwd~~~~~~~~~~~-----h~~~V~~~~~~ 69 (342)
+++.-.+.|+++.|..+.++++.|. ....+..||..+........ -.++|..+.+.
T Consensus 31 ~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~ 97 (281)
T PF12768_consen 31 PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFI 97 (281)
T ss_pred CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEee
Confidence 3444567899999997777777764 45678899998776544332 23778888874
No 465
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=53.16 E-value=2.2e+02 Score=27.39 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=55.9
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCce---eeeeeec-CCceEEEEEeCCC--CeEEEecCCcEEEEEeccCceeeccc--C
Q 019384 28 SNHSDHLLVSSWDKSVRLYDASANV---LRGEFMH-GGPVLDCCFHDDS--SGFSASADHTVRRLVFSHGKEDILGK--H 99 (342)
Q Consensus 28 s~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h-~~~V~~~~~~~~~--~~~s~s~D~~i~~w~~~~~~~~~~~~--h 99 (342)
..++..++-+..+|.+....+.... ....++. .....++++..++ .++.||.-|.=.++.+.......+.. -
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 3456778889999999888875422 2222333 4445677777777 78888876665555555443332221 1
Q ss_pred CcceeEEEEeCC----CC------EEEEee---CCCcEEEEc
Q 019384 100 DAPVRCIEYSYA----AG------QVITGS---WDKSLKCWD 128 (342)
Q Consensus 100 ~~~V~~~~~~~~----~~------~l~sgs---~D~~I~iWd 128 (342)
-++|..+++.+. .. .|++++ .+|.+++.-
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 246666666431 11 555543 457888874
No 466
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=52.70 E-value=2e+02 Score=26.83 Aligned_cols=147 Identities=10% Similarity=0.008 Sum_probs=75.1
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-e----
Q 019384 20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-E---- 93 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~---- 93 (342)
.....+..++++.+++.+..-..++-||--... ......-...+.++.|.+++.++.++.++.+. +....+. .
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccc
Confidence 344556677887776655444434444442211 11222234567888898888888888888763 3333332 1
Q ss_pred -eeccc--CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee-ecCCCCcEEEEec-cCCeEEEEEcCCeE
Q 019384 94 -DILGK--HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG-TYPQPERVYSLSL-VGNRLVVATAGRHV 168 (342)
Q Consensus 94 -~~~~~--h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~v~~~s~-~~~~~~~~s~d~~v 168 (342)
..+.. -...+..+.|.+++.. +.++..|.+....-. +.. -.... ........+.+-+ +++...+.+.+|.|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~D~-G~t--W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRSTDG-GKS--WKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeCCC-Ccc--eeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 11111 1234888888876654 455577877766422 111 11111 0112233455554 33455555666655
Q ss_pred EEE
Q 019384 169 NVY 171 (342)
Q Consensus 169 ~iw 171 (342)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 433
No 467
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=52.57 E-value=35 Score=18.14 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=19.0
Q ss_pred cEEEEeccCCeEEEEEcCCeEEEE
Q 019384 148 RVYSLSLVGNRLVVATAGRHVNVY 171 (342)
Q Consensus 148 ~v~~~s~~~~~~~~~s~d~~v~iw 171 (342)
.+.+++..++.++.++.-+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 355677777888888888889987
No 468
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=48.74 E-value=32 Score=32.10 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=35.8
Q ss_pred eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCc
Q 019384 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT 286 (342)
Q Consensus 245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~ 286 (342)
.+.+++.+|.+.+.|+...=|.|.|+|+.++..++-++|...
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 477899999998888887788999999999888888887764
No 469
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=48.27 E-value=23 Score=36.07 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=46.6
Q ss_pred CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC-Cceeeee-eEEEEcCCCCeEEEecCCCeEEEEeCC---
Q 019384 199 NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG-RDIVYPV-NAIAFHPIYGTFATGGCDGFVNVWDGN--- 273 (342)
Q Consensus 199 ~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~-~~~~~~v-~~v~~sp~~~~l~sgs~Dg~I~iWd~~--- 273 (342)
+.-++.++-.++.+.+-.||.+... .++.|...... ......+ .--..||||..||.+..||.++.|.+.
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~~-----l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALRS-----LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHHH-----HHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence 3455666777888888778764331 12234321000 0000001 111379999999999999999999753
Q ss_pred --CceeeeccCCCC
Q 019384 274 --NKKRLYQYSKYP 285 (342)
Q Consensus 274 --~~~~~~~~~~~~ 285 (342)
...++...+.|.
T Consensus 269 ~~~~rclhewkphd 282 (1283)
T KOG1916|consen 269 KIVHRCLHEWKPHD 282 (1283)
T ss_pred cccHhhhhccCCCC
Confidence 234445555555
No 470
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=48.27 E-value=1.3e+02 Score=29.30 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=67.9
Q ss_pred cCCCCCCCccCCCCCC---CCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-ceeeeeee--cCCceEEEEEeCCCCeEEE
Q 019384 4 VHPPPTSGRELGNPPS---DGISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFM--HGGPVLDCCFHDDSSGFSA 77 (342)
Q Consensus 4 ~~~~~~~~~~~~~~~~---~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-~~~~~~~~--h~~~V~~~~~~~~~~~~s~ 77 (342)
+|-++.+|.-++..|. .-|+.+++.. +..+-.|+..+=+-.|+..+ .....+.. ..++|.++.-.+++.+..+
T Consensus 357 ~van~stG~~v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIG 435 (671)
T COG3292 357 MVANGSTGELVRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIG 435 (671)
T ss_pred EEecCCCCcEEEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEe
Confidence 4555666666665442 3566677776 44555565553344555554 22222221 3456666666677778888
Q ss_pred ecCCcEEEEEeccCcee---ecccC---CcceeEEEEeCCCCEE-EEeeCCCcEEEEcCC
Q 019384 78 SADHTVRRLVFSHGKED---ILGKH---DAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPR 130 (342)
Q Consensus 78 s~D~~i~~w~~~~~~~~---~~~~h---~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~ 130 (342)
+.++.++.- .+..+.. .+..| .+.|..+.+.+++.+- ++|+ .|..|+.+
T Consensus 436 Ts~Glvk~~-pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~---gva~~~sq 491 (671)
T COG3292 436 TSGGLVKRD-PESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAGS---GVAAWESQ 491 (671)
T ss_pred ccCCeEecC-ccccchhcccccccCcCCcchhhhhccCCCCceEEEecc---eeeeeccc
Confidence 888866322 2222211 12222 3457788888888753 4443 46888865
No 471
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=46.78 E-value=3.8e+02 Score=28.36 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=39.4
Q ss_pred cCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384 143 YPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDL 219 (342)
Q Consensus 143 ~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~ 219 (342)
...+..+.+++...+. +.++.+..+++||+-+.+.........++..+..+. -.+..++++.....+....|.-
T Consensus 932 T~~~~~v~Ai~~f~~~-~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iq--t~~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 932 TEIPGPVGAICPFQGR-VLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQ--TYGARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred cCCCccceEEeccCCE-EEEecccEEEEeeCChHHHHhhhhhccCceEEEEEe--ecceEEEEeeccceEEEEEEec
Confidence 3444556777777664 446777899999997643322211122232333332 2234466666555555544443
No 472
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=45.89 E-value=2.5 Score=39.44 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=76.4
Q ss_pred cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe-CCCC-eEEEecCCcEEEEEecc
Q 019384 13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSS-GFSASADHTVRRLVFSH 90 (342)
Q Consensus 13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~-~~~~-~~s~s~D~~i~~w~~~~ 90 (342)
.++..+-.+--...|-+++..++.++.+..+..||-..+.. .+..-.+.-.+++|. .... ++.+-..+.+.+|++.+
T Consensus 28 ~ledaalv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 28 RLEDAALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI-LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred HhhhhhccccceeeEecCCCceehhhhhhHHHhhhhhccee-cccCCchhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence 34444444445667888887899999999999999765432 223334455566665 3233 34666778899999977
Q ss_pred Cceeec---ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC
Q 019384 91 GKEDIL---GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131 (342)
Q Consensus 91 ~~~~~~---~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~ 131 (342)
.....+ ..|+... +.|++....++.+-..+.+.|++.++
T Consensus 107 eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 107 EYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGT 148 (615)
T ss_pred hhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccc
Confidence 653322 1233333 67888777778888889999998654
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=41.91 E-value=4e+02 Score=27.30 Aligned_cols=109 Identities=12% Similarity=0.104 Sum_probs=66.4
Q ss_pred CCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCc------eeeeeeecCCce----------EEEEEeCCCCeEEEecCCc
Q 019384 20 DGISNLRFSN-HSDHLLVSSWDKSVRLYDASAN------VLRGEFMHGGPV----------LDCCFHDDSSGFSASADHT 82 (342)
Q Consensus 20 ~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~------~~~~~~~h~~~V----------~~~~~~~~~~~~s~s~D~~ 82 (342)
.....|+|+| +.+.||.....|.-.|||+... .+.....+.|.+ ..++|..+...+..+....
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 4566899998 4578999999999999999221 121111222322 3677865555555555667
Q ss_pred EEEEEeccCcee---ecccCCcceeEEEEeCC--CC-EEEEeeCCCcEEEEcCCC
Q 019384 83 VRRLVFSHGKED---ILGKHDAPVRCIEYSYA--AG-QVITGSWDKSLKCWDPRG 131 (342)
Q Consensus 83 i~~w~~~~~~~~---~~~~h~~~V~~~~~~~~--~~-~l~sgs~D~~I~iWd~~~ 131 (342)
+.++|+++.... ........|..+.-++. +. .|+|. ..|...|+..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec---CeEEEEEccC
Confidence 778888776531 22334466777777775 22 33443 4566667654
No 474
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=41.42 E-value=1e+02 Score=31.30 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=35.8
Q ss_pred EEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc
Q 019384 203 YALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK 275 (342)
Q Consensus 203 ~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~ 275 (342)
++.++.+|.+.+ +...+. ...+.+..|... ...|+.+.+.-++-+++-.+-| ++++++.++.
T Consensus 638 ~~was~gG~V~v--i~~tt~--~~~~~leahqee------~~~Vthm~~~~~gVwvafasG~-~~rlfhtetl 699 (925)
T KOG3522|consen 638 FVWASEGGCVHV--IPSTTF--IRSWDLEAHQEE------AHSVTHMLYLDNGVWVAFASGD-EERLFHTETL 699 (925)
T ss_pred eeeeecCCceEE--Eechhc--cccchhHHHHhh------cceEEEEEeeCCceEEEEcCCC-EEEEeccccc
Confidence 567777787654 554332 233334444432 2368888888777666555433 6666666653
No 475
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=41.10 E-value=55 Score=22.99 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCeEEE-ecCCCeEEEEeCC
Q 019384 246 VNAIAFHPIYGTFAT-GGCDGFVNVWDGN 273 (342)
Q Consensus 246 v~~v~~sp~~~~l~s-gs~Dg~I~iWd~~ 273 (342)
.+.|.++|++++|.. ....+.|++|..+
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 467899999988754 4567899999765
No 476
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=39.99 E-value=72 Score=22.56 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe
Q 019384 165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR 211 (342)
Q Consensus 165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~ 211 (342)
+|.+.-||..+.+...... .+ .-.+.|+.++++..++++.....
T Consensus 36 ~GRll~ydp~t~~~~vl~~--~L-~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD--GL-YFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE--EE-SSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CcCEEEEECCCCeEEEehh--CC-CccCeEEEcCCCCEEEEEeccCc
Confidence 4566777877653211111 11 13577888999888777755443
No 477
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=39.76 E-value=1.3e+02 Score=23.16 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCeEE-EEeCCCcEEEEECCCc--ee--eeeeecCCceEEEEEeCC
Q 019384 19 SDGISNLRFSNHSDHLL-VSSWDKSVRLYDASAN--VL--RGEFMHGGPVLDCCFHDD 71 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~-s~s~Dgti~vwd~~~~--~~--~~~~~h~~~V~~~~~~~~ 71 (342)
+.++.---|++|.+.|. +|-.|++||.|.+..+ .+ ...+.+..+..+++|.|.
T Consensus 10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence 45666777888887764 5668899999999765 22 334445566677777654
No 478
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=39.40 E-value=80 Score=32.20 Aligned_cols=63 Identities=19% Similarity=0.070 Sum_probs=43.8
Q ss_pred eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeecc-------------C--CC----CcceEEEEECCCCCEEEEEEe
Q 019384 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY-------------S--KY----PTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~-------------~--~~----~~~V~~v~~spdg~~las~s~ 305 (342)
.|.++.....+.+++..-.||+|.++|..+.+.+... . |. ...+..++|||.+..++.-..
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 4777777777888999999999999998765333211 0 11 113446899999998887665
Q ss_pred cc
Q 019384 306 YT 307 (342)
Q Consensus 306 ~~ 307 (342)
++
T Consensus 341 ~~ 342 (753)
T PF11635_consen 341 DG 342 (753)
T ss_pred CC
Confidence 44
No 479
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=38.19 E-value=1.9e+02 Score=25.42 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=41.7
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeCCC------ceeeeccCCCCcceEEEEECC--CCCEEEEEEe
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNN------KKRLYQYSKYPTSIAALSFSR--DGRLLAVASS 305 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~------~~~~~~~~~~~~~V~~v~~sp--dg~~las~s~ 305 (342)
...++++++|..+++--..+.|..|+... .+.+.+=......+.++.+.+ +|.+.+.+..
T Consensus 188 s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 188 SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp ECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 45678899999999999999999999875 122332222245789999999 9997777765
No 480
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.85 E-value=2.6e+02 Score=23.60 Aligned_cols=52 Identities=10% Similarity=0.166 Sum_probs=30.8
Q ss_pred CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCC
Q 019384 120 WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNM 176 (342)
Q Consensus 120 ~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~ 176 (342)
.|+.-..+|.++.. .++.+..+..-..++.+++.++......++..-|-.+.
T Consensus 109 ~egvaf~~d~~t~~-----~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 109 KEGVAFKYDADTLE-----ELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred ccceeEEEChHHhh-----hhcccccCCcceeeecCCcceEeeCCceEEEecCHHHh
Confidence 34555667765422 23444444555667777777777666667777776554
No 481
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=35.82 E-value=3.3e+02 Score=24.45 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=23.7
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEECC
Q 019384 23 SNLRFSNHSDHLLVSSWDKSVRLYDAS 49 (342)
Q Consensus 23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~ 49 (342)
+-|+|+|.+..-++...-++..+||..
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCC
Confidence 689999999888887788999999986
No 482
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=34.97 E-value=1e+02 Score=18.29 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=22.7
Q ss_pred EEEeccCCeEEEEEcCCeEEEEeCCCCCCc
Q 019384 150 YSLSLVGNRLVVATAGRHVNVYDLRNMSQP 179 (342)
Q Consensus 150 ~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~ 179 (342)
..+...++....+..++.+.+.|+.+...+
T Consensus 5 ~~v~v~g~yaYva~~~~Gl~IvDISnPs~P 34 (42)
T PF08309_consen 5 RDVAVSGNYAYVADGNNGLVIVDISNPSNP 34 (42)
T ss_pred EEEEEECCEEEEEeCCCCEEEEECCCCCCC
Confidence 345666787777877778999999887654
No 483
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=34.67 E-value=5.3e+02 Score=26.55 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=27.8
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEEC
Q 019384 14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDA 48 (342)
Q Consensus 14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~ 48 (342)
....-+++|-+.+||.|.+.+...-.+.+|-+++-
T Consensus 107 ivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 107 IVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred hhccccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 33455799999999999998776667778888874
No 484
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.42 E-value=2.1e+02 Score=30.76 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=48.7
Q ss_pred ceEEEEEeCCCCeEEEecCCcEEEEEec--cC------cee-----------------ec-ccCCcceeEEEEeCCCCEE
Q 019384 62 PVLDCCFHDDSSGFSASADHTVRRLVFS--HG------KED-----------------IL-GKHDAPVRCIEYSYAAGQV 115 (342)
Q Consensus 62 ~V~~~~~~~~~~~~s~s~D~~i~~w~~~--~~------~~~-----------------~~-~~h~~~V~~~~~~~~~~~l 115 (342)
.|.++....+|+++-+|.|+- +|.+. .. +.. .+ ..+.++|..++.....+.+
T Consensus 180 ~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~Il 257 (1311)
T KOG1900|consen 180 SVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNIL 257 (1311)
T ss_pred eEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccccee
Confidence 356777668888888888884 45431 11 010 11 2567899999998777888
Q ss_pred EEeeCCCcEEEEcCCC
Q 019384 116 ITGSWDKSLKCWDPRG 131 (342)
Q Consensus 116 ~sgs~D~~I~iWd~~~ 131 (342)
++=+.-++|++||+..
T Consensus 258 Y~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 258 YVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeccCceEEEEEccC
Confidence 9999999999999864
No 485
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=33.97 E-value=4.1e+02 Score=25.45 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=22.7
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNN 274 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~ 274 (342)
-.-++.+|.|+.++.+..+|.+.|+-.+.
T Consensus 46 G~~l~vDP~~R~i~v~a~e~~~~v~~l~~ 74 (504)
T PF10433_consen 46 GQYLAVDPSGRCIAVSAYEGNFLVYPLNR 74 (504)
T ss_dssp --EEEE-TTSSEEEEEEBTTEEEEEE-SS
T ss_pred CcEEEECCcCCEEEEEecCCeEEEEEecc
Confidence 34588999999999999999999998765
No 486
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.19 E-value=5.6e+02 Score=26.07 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=46.6
Q ss_pred CCeEEEEEcCCC-CeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccC
Q 019384 20 DGISNLRFSNHS-DHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHG 91 (342)
Q Consensus 20 ~~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~ 91 (342)
++.-+|..+|.. ..+. +.--.|+||+..+..+....-..+.+..+.|+.+..++....||++.++++-..
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh
Confidence 445555555521 1111 333458899987765444332334888999999999999999999999987543
No 487
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=31.85 E-value=1.3e+02 Score=26.80 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=33.6
Q ss_pred eeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCC
Q 019384 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKY 284 (342)
Q Consensus 246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~ 284 (342)
+++|...++|.+|+|.-.=.+|.+.|.++++.+..+.+.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 778888899999999998889999999998888777554
No 488
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=31.69 E-value=5.5e+02 Score=25.81 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=80.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee----eeeecCCce-EEEEEe---C----CCCeEEEec-C-C--c
Q 019384 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR----GEFMHGGPV-LDCCFH---D----DSSGFSASA-D-H--T 82 (342)
Q Consensus 19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~----~~~~h~~~V-~~~~~~---~----~~~~~s~s~-D-~--~ 82 (342)
.+.|-.|.|.+++..++..-..|.|++||...+.+. ....++..| +. +|- . +..+++.+. + . .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 678999999999999999999999999999433211 111233322 22 332 1 122344333 2 2 3
Q ss_pred EEEEEe--ccCceeecc---cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee-ecCCC-CcEEEEec-
Q 019384 83 VRRLVF--SHGKEDILG---KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG-TYPQP-ERVYSLSL- 154 (342)
Q Consensus 83 i~~w~~--~~~~~~~~~---~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~-~~v~~~s~- 154 (342)
.+++.+ +......+. .+........|.-..+.|+-= .+++|.+|.+-.........+. ..... ..++++..
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 566666 222211111 122223333344334444433 6789999988543211111111 01111 23455544
Q ss_pred cCCeEEEEEcCCeEEEEeCCCC
Q 019384 155 VGNRLVVATAGRHVNVYDLRNM 176 (342)
Q Consensus 155 ~~~~~~~~s~d~~v~iwd~~~~ 176 (342)
.+++++.+ .++.|.+.|+.-.
T Consensus 287 s~nRvLLs-~~nkIyLld~~~~ 307 (670)
T PF10395_consen 287 SPNRVLLS-VNNKIYLLDLKFE 307 (670)
T ss_pred CCCeEEEE-cCCEEEEEeehhh
Confidence 56676644 4568999998643
No 489
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=31.16 E-value=4.2e+02 Score=24.38 Aligned_cols=46 Identities=22% Similarity=0.163 Sum_probs=31.9
Q ss_pred EEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384 259 ATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 259 ~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~ 305 (342)
+.+..+|.+.-||..++. .+.+..--.-.+.++.|||+.+++.+-.
T Consensus 193 l~g~~~GRl~~YD~~tK~-~~VLld~L~F~NGlaLS~d~sfvl~~Et 238 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKV-TKVLLDGLYFPNGLALSPDGSFVLVAET 238 (376)
T ss_pred ecCCCccceEEecCcccc-hhhhhhcccccccccCCCCCCEEEEEee
Confidence 445578888899987643 2233333344589999999999987764
No 490
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=30.21 E-value=2.6e+02 Score=21.60 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=55.3
Q ss_pred eEEEEEcCCeEEEEeCCCCCCcc-----cccccccceeeEEEEEee-----CCceEEEEccCCeEEEEEeechhhhhccc
Q 019384 158 RLVVATAGRHVNVYDLRNMSQPE-----QRRESSLKYQTRCVRCYP-----NGTGYALSSVEGRVAMEFFDLSEASQAKK 227 (342)
Q Consensus 158 ~~~~~s~d~~v~iwd~~~~~~~~-----~~~~~~~~~~~~~v~~~~-----~~~~~~~~s~~~~~~i~~~d~~~~~~~~~ 227 (342)
.++.++..+.|.+.+........ ......++..+++++..+ +...+++++... +..||.........
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~---llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTS---LLAYDVENNSDLFY 88 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccce---EEEEEcccCchhhh
Confidence 46667777778887765332111 111122334566665433 234566776543 45688865433221
Q ss_pred ceeeeEEecCCCCceeeeeeEEEEc---CCCCeEEEecCCCeEEEEeCCCceeeec
Q 019384 228 YAFKCHRKSEAGRDIVYPVNAIAFH---PIYGTFATGGCDGFVNVWDGNNKKRLYQ 280 (342)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~v~~v~~s---p~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 280 (342)
..+ . ..|+++.+. ....-|+..+-+..|.-+|.+..+...+
T Consensus 89 ke~------~------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 89 KEV------P------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred hhC------c------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 111 1 136666553 2123344444567888888776555444
No 491
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=29.46 E-value=1.2e+02 Score=17.41 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=19.2
Q ss_pred CCeEEEEEcCCCCeEEEEeCCC
Q 019384 20 DGISNLRFSNHSDHLLVSSWDK 41 (342)
Q Consensus 20 ~~V~~l~fs~~~~~l~s~s~Dg 41 (342)
.....|+++++|+..++|..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 5688999999999999998776
No 492
>PHA02790 Kelch-like protein; Provisional
Probab=28.01 E-value=5.4e+02 Score=24.57 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=35.2
Q ss_pred CCCeEEEecCCCeEEEEeCCCce--eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCccc
Q 019384 254 IYGTFATGGCDGFVNVWDGNNKK--RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVK 331 (342)
Q Consensus 254 ~~~~l~sgs~Dg~I~iWd~~~~~--~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (342)
++..++.|+ .+.+||.++.+ .+..+....... +++ --+|++.+.|+... +. ..+.+..|+.+...|.
T Consensus 407 ~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~---~~---~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 407 GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYR---GS---YIDTIEVYNNRTYSWN 475 (480)
T ss_pred CCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCC---Cc---ccceEEEEECCCCeEE
Confidence 466677774 57788876542 222222111122 222 35788888887542 11 1235667766655543
No 493
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=26.58 E-value=4.5e+02 Score=23.25 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=36.3
Q ss_pred CCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEeCCCCeEEEecCCc--EEEEEec
Q 019384 30 HSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFHDDSSGFSASADHT--VRRLVFS 89 (342)
Q Consensus 30 ~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~--i~~w~~~ 89 (342)
+++.|+-|..+|...+. .... .......+...|..+...+...++..=.|+. ++.+++.
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 34578888888865554 5442 2223334667898988876555443333444 8888873
No 494
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=26.54 E-value=2.1e+02 Score=27.82 Aligned_cols=19 Identities=42% Similarity=0.506 Sum_probs=15.7
Q ss_pred CCcceEEEEECCCCCEEEE
Q 019384 284 YPTSIAALSFSRDGRLLAV 302 (342)
Q Consensus 284 ~~~~V~~v~~spdg~~las 302 (342)
...+++.++|+||++.|.+
T Consensus 500 ~gaE~tG~~fspDg~tlFv 518 (524)
T PF05787_consen 500 NGAEITGPCFSPDGRTLFV 518 (524)
T ss_pred CCcccccceECCCCCEEEE
Confidence 3468999999999997765
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=25.68 E-value=5.5e+02 Score=23.88 Aligned_cols=169 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred EEEEEeCCCCeEEEecCCcEEEEEe-------ccCc-eeec-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC
Q 019384 64 LDCCFHDDSSGFSASADHTVRRLVF-------SHGK-EDIL-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG 134 (342)
Q Consensus 64 ~~~~~~~~~~~~s~s~D~~i~~w~~-------~~~~-~~~~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~ 134 (342)
..+...+.-..+-...|..+.+|+. .... ...+ .++...+.++ ++.....|.|+.|+-=+...
T Consensus 29 ~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~~~l 100 (422)
T PF08801_consen 29 CSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESISHLL 100 (422)
T ss_dssp -EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-TT-TT
T ss_pred eEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccchhhh
Q ss_pred cceeeee----------ecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCc-eE
Q 019384 135 QERTLVG----------TYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT-GY 203 (342)
Q Consensus 135 ~~~~~~~----------~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 203 (342)
....... ....+.........+..++.++..|+|.+.-.+......+..-.........+...-.+- .-
T Consensus 101 ~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~ 180 (422)
T PF08801_consen 101 VLATPSQISLLGVSYSELLSGELSTSLTNVEPSGFIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSS 180 (422)
T ss_dssp --EEEE------------------EEEEEEETTTEEEEETT--EEEEEE-TTS-EEEEE-TT------------------
T ss_pred hcCccccccccccceeeecCCceEEECCCCceEEEEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceecc
Q ss_pred EEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee-eeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384 204 ALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP-VNAIAFHPIYGTFATGGCDGFVNVWDGN 273 (342)
Q Consensus 204 ~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~-v~~v~~sp~~~~l~sgs~Dg~I~iWd~~ 273 (342)
+..+ .+.+ + |.+++..+..+.|++-..+|.|.+|++.
T Consensus 181 ~~p~~~~~~---------------------------------~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 181 LLPSFSDPR---------------------------------PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --------------------------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ccCCcccch---------------------------------hceeeEEecCCcCEEEEEeCCCcEEEEEEe
No 496
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=25.61 E-value=73 Score=32.27 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=44.7
Q ss_pred eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC---CCCcceEEEEECCCCCEEEEEEe
Q 019384 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS---KYPTSIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~---~~~~~V~~v~~spdg~~las~s~ 305 (342)
||++.+|..| ++-|++||.|.++...+......+. .|...|+++.++-.|-+++-+++
T Consensus 628 Pvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG 688 (925)
T KOG3522|consen 628 PVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASG 688 (925)
T ss_pred cccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCC
Confidence 6888888655 7778899999999988755544433 45568999999998888877765
No 497
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.56 E-value=4.8e+02 Score=23.22 Aligned_cols=198 Identities=12% Similarity=0.143 Sum_probs=95.5
Q ss_pred ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEE-EcCCeEEEEeCC
Q 019384 97 GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVA-TAGRHVNVYDLR 174 (342)
Q Consensus 97 ~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~-s~d~~v~iwd~~ 174 (342)
.+-...|.++.|+|+.+.|++......-.+|=...+.......+.....+..+ .+.+ +.++.+ =.++++.++-+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~I---eyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETI---EYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHe---EEecCCEEEEEehhcceEEEEEEc
Confidence 34444599999999998887776666655553222222222233333222221 1111 111111 111222222221
Q ss_pred CC---------CCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc---e
Q 019384 175 NM---------SQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD---I 242 (342)
Q Consensus 175 ~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~---~ 242 (342)
.. +.+..... ..+.-...+++.|.+..+.+.-.-.=+.|+.++..... +..|........ -
T Consensus 159 ~~t~~~~~~~~~i~L~~~~-k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~------l~~~~~~~~~~~~~~f 231 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTN-KKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS------LSVHASLDPTADRDLF 231 (316)
T ss_pred CCccEEeccceEEeccccC-CCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc------cccccccCcccccceE
Confidence 11 11100000 11223567889998887777665555556555532211 111111100000 0
Q ss_pred eeeeeEEEEcCC-CCeEEEecCCCeEEEEeCCCceeeec------cCCCCc---ceEEEEECCCCCEEEEEEe
Q 019384 243 VYPVNAIAFHPI-YGTFATGGCDGFVNVWDGNNKKRLYQ------YSKYPT---SIAALSFSRDGRLLAVASS 305 (342)
Q Consensus 243 ~~~v~~v~~sp~-~~~l~sgs~Dg~I~iWd~~~~~~~~~------~~~~~~---~V~~v~~spdg~~las~s~ 305 (342)
...|+++.|++. +..|+-+-+++.+.--|.... .+.. ..+-.. .-..++..++|.+.+++-.
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 224788899875 456677888888877776532 1211 112222 3467888888886665544
No 498
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=24.87 E-value=2e+02 Score=31.11 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=0.0
Q ss_pred eEEEEcCCCCeEEEecC------------CCeEEEEeCCCceeeeccCC---------------CCcceEEEEECCCCCE
Q 019384 247 NAIAFHPIYGTFATGGC------------DGFVNVWDGNNKKRLYQYSK---------------YPTSIAALSFSRDGRL 299 (342)
Q Consensus 247 ~~v~~sp~~~~l~sgs~------------Dg~I~iWd~~~~~~~~~~~~---------------~~~~V~~v~~spdg~~ 299 (342)
.+++++++|..+++-+. ||+|.+.-.....|-+.... +.+...++|.+|||..
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v 675 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDV 675 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcE
Q ss_pred EEE
Q 019384 300 LAV 302 (342)
Q Consensus 300 las 302 (342)
+++
T Consensus 676 ~IA 678 (1899)
T KOG4659|consen 676 IIA 678 (1899)
T ss_pred EEe
No 499
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=22.60 E-value=4.1e+02 Score=23.55 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee
Q 019384 21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF 57 (342)
Q Consensus 21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~ 57 (342)
=|++|...++|++|+|+-.=.+|.+.|..+++++..+
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe
Confidence 3667788889999999988899999998888765544
No 500
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=21.59 E-value=9e+02 Score=24.91 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCCeEEEEeCCCcEEEEECCCceeeeeeecCCce----------------EEEEEeCCCCeEEEec----------CCcE
Q 019384 30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPV----------------LDCCFHDDSSGFSASA----------DHTV 83 (342)
Q Consensus 30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V----------------~~~~~~~~~~~~s~s~----------D~~i 83 (342)
.+.+++.++.|+.+.-.|..+++....++.++.| ++.-...++.++.++. ++.|
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Q ss_pred EEEEeccCcee------------------ecccCCcce-eEEEEeCCCCEEEEee------------------CCCcEEE
Q 019384 84 RRLVFSHGKED------------------ILGKHDAPV-RCIEYSYAAGQVITGS------------------WDKSLKC 126 (342)
Q Consensus 84 ~~w~~~~~~~~------------------~~~~h~~~V-~~~~~~~~~~~l~sgs------------------~D~~I~i 126 (342)
+-+|..+++.. .+..-...+ ...++.++.++++.+. ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Q ss_pred EcCCCCCCcceeeeeec-------CCCCcEEEEec-cCC---eEEEEEcCCeEEEEeCCCCC
Q 019384 127 WDPRGASGQERTLVGTY-------PQPERVYSLSL-VGN---RLVVATAGRHVNVYDLRNMS 177 (342)
Q Consensus 127 Wd~~~~~~~~~~~~~~~-------~~~~~v~~~s~-~~~---~~~~~s~d~~v~iwd~~~~~ 177 (342)
.|.++++..-......+ ........+.. ++. .++.++.+|.+.++|-++++
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Done!