BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019385
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQ 233
R+RQ ++ V +D G VS KF T++ + G+ R + VR+ I E L +V
Sbjct: 22 RDRQNPDMLVPPETDHGTVSNMKFS-FSDTHNRLEKGGYAREVTVREL-PISENLASVNM 79
Query: 234 QLAP 237
+L P
Sbjct: 80 RLKP 83
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQ 233
R+RQ ++ V +D G VS KF T++ + G+ R + VR+ I E L +V
Sbjct: 27 RDRQNPDMLVPPETDHGTVSNMKFS-FSDTHNRLEKGGYAREVTVREL-PISENLASVNM 84
Query: 234 QLAP 237
+L P
Sbjct: 85 RLKP 88
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQ 233
R+RQ ++ V +D G VS KF T++ + G+ R + VR+ I E L +V
Sbjct: 27 RDRQNPDMLVPPETDHGTVSNMKFS-FSDTHNRLEKGGYAREVTVREL-PISENLASVNM 84
Query: 234 QLAP 237
+L P
Sbjct: 85 RLKP 88
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQ 233
R+RQ ++ V +D G VS KF T++ + G+ R + VR+ I E L +V
Sbjct: 27 RDRQNPDMLVPPETDHGTVSNMKFS-FSDTHNRLEKGGYAREVTVREL-PISENLASVNM 84
Query: 234 QLAP 237
+L P
Sbjct: 85 RLKP 88
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQ 233
R+RQ ++ V +D G VS KF T++ + G+ R + VR+ I E L +V
Sbjct: 27 RDRQNPDMLVPPETDHGTVSNMKFS-FSDTHNRLEKGGYAREVTVREL-PISENLASVNM 84
Query: 234 QLAP 237
+L P
Sbjct: 85 RLKP 88
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQ 233
R+RQ ++ V +D G VS KF T++ + G+ R + VR+ I E L +V
Sbjct: 27 RDRQNPDMLVPPETDHGTVSNMKFS-FSDTHNRLEKGGYAREVTVREL-PISENLASVNM 84
Query: 234 QLAP 237
+L P
Sbjct: 85 RLKP 88
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQ 233
R+RQ ++ V +D G VS KF T++ + G+ R + VR+ I E L +V
Sbjct: 27 RDRQNPDMLVPPETDHGTVSNMKFS-FSDTHNRLEKGGYAREVTVREL-PISENLASVNM 84
Query: 234 QLAP 237
+L P
Sbjct: 85 RLKP 88
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 222 DTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLF 281
D+ E L A+ PE R+ ++ LL V+ D ++PH H+ E ++ + + + +
Sbjct: 214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV- 272
Query: 282 HFDVHEDVRTIADATIEKDESHAGKVVERH 311
+ E T+A+ I KD V+ RH
Sbjct: 273 ALEACEFWLTLAEQPICKD------VLVRH 296
>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
Length = 480
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 199 PLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLI 258
P+++T+++ R V++V T G FL A Q+L + ++ ++L ++
Sbjct: 285 PVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISML-----IV 339
Query: 259 IPHQHS 264
+PH+ S
Sbjct: 340 VPHKMS 345
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 222 DTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLF 281
D+ E L A+ PE R+ ++ LL V+ D ++PH H+ E ++ + + + +
Sbjct: 214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV- 272
Query: 282 HFDVHEDVRTIADATIEKD 300
+ E T+A+ I KD
Sbjct: 273 ALEACEFWLTLAEQPICKD 291
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 222 DTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLF 281
D+ E L A+ PE R+ ++ LL V+ D ++PH H+ E ++ + + + +
Sbjct: 214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV- 272
Query: 282 HFDVHEDVRTIADATIEKD 300
+ E T+A+ I KD
Sbjct: 273 ALEACEFWLTLAEQPICKD 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,803,989
Number of Sequences: 62578
Number of extensions: 323342
Number of successful extensions: 770
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 21
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)