Query 019385
Match_columns 342
No_of_seqs 142 out of 171
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 09:01:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2894 Uncharacterized conser 100.0 2E-138 5E-143 978.7 22.2 324 5-340 1-327 (331)
2 PF04921 XAP5: XAP5, circadian 100.0 2E-109 4E-114 772.9 15.4 223 111-340 1-239 (239)
3 PF15377 DUF4604: Domain of un 77.6 0.78 1.7E-05 40.9 0.2 17 111-127 142-158 (158)
4 cd00118 LysM Lysin domain, fou 77.6 3.7 8.1E-05 26.0 3.4 30 215-245 2-31 (46)
5 PRK02539 hypothetical protein; 60.8 7.2 0.00016 32.4 2.4 37 168-212 23-59 (85)
6 PRK01546 hypothetical protein; 60.7 7.2 0.00016 31.9 2.4 36 169-212 25-60 (79)
7 PF01476 LysM: LysM domain; I 60.4 4.2 9.1E-05 27.6 0.8 42 217-260 2-44 (44)
8 COG2326 Uncharacterized conser 58.7 5.4 0.00012 39.2 1.5 44 272-315 83-144 (270)
9 TIGR02899 spore_safA spore coa 57.1 13 0.00027 24.5 2.8 43 218-261 1-44 (44)
10 PRK14125 cell division suppres 56.1 17 0.00038 30.5 4.0 47 213-260 36-89 (103)
11 PF06887 DUF1265: Protein of u 44.8 3.8 8.2E-05 30.7 -1.5 20 246-265 6-25 (48)
12 KOG1085 Predicted methyltransf 44.7 39 0.00084 34.3 5.0 124 151-288 212-344 (392)
13 PF09851 SHOCT: Short C-termin 42.3 20 0.00043 24.0 1.8 16 69-84 15-30 (31)
14 PF12640 UPF0489: UPF0489 doma 41.9 12 0.00026 32.8 0.9 33 259-291 5-40 (162)
15 PRK01631 hypothetical protein; 41.6 18 0.00039 29.5 1.8 36 169-212 23-58 (76)
16 PF10293 DUF2405: Domain of un 40.5 13 0.00028 33.4 0.9 21 251-271 43-66 (157)
17 TIGR03708 poly_P_AMP_trns poly 37.3 32 0.0007 36.4 3.3 44 173-231 18-64 (493)
18 cd01760 RBD Ubiquitin-like dom 36.9 43 0.00093 26.6 3.2 24 210-233 8-31 (72)
19 PF02196 RBD: Raf-like Ras-bin 36.7 35 0.00077 26.6 2.7 24 210-233 9-32 (71)
20 PF00673 Ribosomal_L5_C: ribos 36.2 28 0.0006 28.8 2.2 55 215-271 5-65 (95)
21 TIGR03709 PPK2_rel_1 polyphosp 36.0 61 0.0013 31.6 4.8 47 167-228 28-77 (264)
22 PF05979 DUF896: Bacterial pro 35.2 17 0.00037 28.7 0.7 30 169-204 22-51 (65)
23 cd08159 APC10-like APC10-like 33.8 25 0.00055 30.9 1.6 36 191-226 43-78 (129)
24 PHA03162 hypothetical protein; 32.1 35 0.00076 30.6 2.3 73 5-77 2-93 (135)
25 PRK00924 5-keto-4-deoxyuronate 30.2 48 0.001 32.8 3.1 29 174-210 17-45 (276)
26 cd01814 NTGP5 Ubiquitin-like N 28.7 1.1E+02 0.0023 26.8 4.5 68 197-269 2-72 (113)
27 KOG1029 Endocytic adaptor prot 27.8 3.1E+02 0.0067 31.6 8.8 71 9-94 324-394 (1118)
28 cd01818 TIAM1_RBD Ubiquitin do 27.8 61 0.0013 26.6 2.7 44 210-253 8-55 (77)
29 smart00455 RBD Raf-like Ras-bi 27.2 78 0.0017 24.7 3.2 24 210-233 8-31 (70)
30 PRK11198 LysM domain/BON super 27.1 84 0.0018 27.6 3.8 46 214-260 96-146 (147)
31 smart00257 LysM Lysin motif. 27.0 79 0.0017 19.3 2.7 16 216-231 2-17 (44)
32 cd00196 UBQ Ubiquitin-like pro 26.1 1.7E+02 0.0037 18.6 4.4 45 210-262 6-50 (69)
33 TIGR02907 spore_VI_D stage VI 24.0 83 0.0018 32.1 3.5 45 214-260 294-338 (338)
34 PRK13914 invasion associated s 23.8 41 0.00089 35.7 1.4 50 211-262 25-74 (481)
35 PF01359 Transposase_1: Transp 23.5 73 0.0016 25.6 2.5 40 202-241 32-76 (81)
36 TIGR03850 bind_CPR_0540 carboh 22.9 1.3E+02 0.0028 29.4 4.6 27 184-210 18-44 (437)
37 PF13881 Rad60-SLD_2: Ubiquiti 22.9 1.6E+02 0.0034 25.2 4.5 69 198-268 1-69 (111)
38 KOG4700 Uncharacterized homolo 22.7 2.1E+02 0.0046 27.2 5.7 51 197-255 58-122 (207)
39 PF06652 Methuselah_N: Methuse 22.6 32 0.00069 31.5 0.3 18 251-268 19-37 (179)
40 COG4927 Predicted choloylglyci 21.6 53 0.0011 33.1 1.6 57 258-326 86-147 (336)
41 COG4224 Uncharacterized protei 21.4 65 0.0014 26.4 1.8 30 168-203 23-52 (77)
42 COG5148 RPN10 26S proteasome r 21.3 37 0.0008 32.6 0.4 29 46-74 20-55 (243)
43 PF13510 Fer2_4: 2Fe-2S iron-s 20.3 1E+02 0.0023 24.4 2.8 23 206-232 7-29 (82)
No 1
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=100.00 E-value=2.4e-138 Score=978.69 Aligned_cols=324 Identities=52% Similarity=0.820 Sum_probs=295.1
Q ss_pred CCCCCCcHhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCccccccchHHHHHhhhcccccceeHHHHHHHHHHHH
Q 019385 5 GDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIR 84 (342)
Q Consensus 5 ~~~y~g~~~e~~r~~~l~kqRe~~~~~~e~~k~~~~~~~~~~~~~~~f~~~~d~~E~~lk~~TVGLVtl~dfk~kr~~i~ 84 (342)
+++|+|+|+||+|||||+|+||.++++||.+|++|++++...+|.++|+++||+||+.||++|||||||+||+++|++|+
T Consensus 1 ~a~ykg~~~eagR~~~L~KkRE~qre~ie~~k~k~~e~~~~~~i~~kf~a~ydaVe~~lKssTvGLVtL~Dmk~kqeniV 80 (331)
T KOG2894|consen 1 MAQYKGTASEAGRAMHLMKKRERQREQIEQLKQKIAEENILKGIDNKFSAHYDAVEEELKSSTVGLVTLDDMKAKQENIV 80 (331)
T ss_pred CCcccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhccccHHHHHHHHhhcccceEEHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HhHHHHHHHH-HHHhHHHHHHHHH-HHHHhhhhhccCCCCCCcccCCcccccccchhhhhhhhhhhcccCCCCCCCCCCC
Q 019385 85 NKIEEEEKEK-LQKLLQEEEELQL-EKRKKRKIKGNSRLSFADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFL 162 (342)
Q Consensus 85 e~~e~e~~~~-~~~~~~~~~~~~~-~k~kk~kk~~k~~LSF~~Deee~~~~~~~~~~~~~~~~~~~~k~gKnP~VdTsFL 162 (342)
+..+.+.+.+ ..+.+....+.++ +..|++++++++.|||+.||++|+++.+... -+.+++++||||+||||||
T Consensus 81 reRekqlak~~~~k~q~k~~e~~~eKe~K~~kkr~~s~LSFa~DdEededD~~~k~-----~~~Kk~klGKdP~VDTSFL 155 (331)
T KOG2894|consen 81 REREKQLAKKKLSKTQQKKRELAREKEEKKEKKRQISRLSFALDDEEDEDDAEEKS-----IPLKKGKLGKDPDVDTSFL 155 (331)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh-----cchhhhhcCCCCCcccccC
Confidence 8666554331 1122222333333 4457778889999999999876555433221 2234789999999999999
Q ss_pred CCcchhh-hHHHHHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCCCCcceEEeecCCcHHHHHHHHHHHhhHHhHh
Q 019385 163 PDRGVED-DLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFRE 241 (342)
Q Consensus 163 PD~~RE~-E~~~Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGsghrr~v~vkKGdtI~~FL~k~r~~l~~ef~E 241 (342)
||++||+ |+++||+||+||+++ |++||+|+|+|||||||||||||+|+|+|||||+|||.+|+++|+++|+|
T Consensus 156 PDrEREeeEnr~RE~L~~eW~~~-------qe~~K~Eei~it~sYWDGsgHRr~v~~rKGnti~qfL~~~~e~L~kdF~E 228 (331)
T KOG2894|consen 156 PDREREEEENRLREELRQEWEAK-------QEKIKNEEIEITFSYWDGSGHRRNVKVRKGNTIQQFLQKALEQLRKDFRE 228 (331)
T ss_pred CchhhHHHHHHHHHHHHHHHHHH-------HHHhcCCceEEEEEeecCCCcceeeeecCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcCceeeeeCceecCCCcchhhhhhhccCCCCCCccccccCccccccccccccccCCCCceeeecceeccCCcccc
Q 019385 242 IRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFP 321 (342)
Q Consensus 242 lr~vsvd~LMyVKeDlIIPHhytFYdfIvnKarGksGpLF~Fdv~~dvr~~~datvEkdeshagKVV~R~WYErNKHIFP 321 (342)
|++++|+|||||||||||||||||||||||||||||||||+||||+|||+++|||+|+|+|||||||+|+||||||||||
T Consensus 229 lrs~~~e~LmyvKEDLIiPH~~sFydfIvtkArGKsGPLF~FDvh~DVR~~sDAt~ekdESHagKvvlRsWYEkNKHIfP 308 (331)
T KOG2894|consen 229 LRSAGVEQLMYVKEDLIIPHHHSFYDFIVTKARGKSGPLFHFDVHDDVRLISDATVEKDESHAGKVVLRSWYEKNKHIFP 308 (331)
T ss_pred HHHhhHHHhhhhhhheecccchhHHHHHHHHhccCCCCceeeechhhhhhhhhhcccccccccchhhhhhHHhhcCccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCCCCCccccccc
Q 019385 322 ASRWEIYDPTKKWERYTIH 340 (342)
Q Consensus 322 ASrWe~yDP~K~y~~Yti~ 340 (342)
|||||+|||+|.|++|||.
T Consensus 309 ASRWE~~~P~K~~~~~~~~ 327 (331)
T KOG2894|consen 309 ASRWEPYDPEKKWDKYTIR 327 (331)
T ss_pred hhhCcCCCCccccchhhhh
Confidence 9999999999999999996
No 2
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=100.00 E-value=1.8e-109 Score=772.87 Aligned_cols=223 Identities=59% Similarity=0.991 Sum_probs=204.1
Q ss_pred HhhhhhccCCCCCCcccCCcccccccchhhh---------------hhhhhhhcccCCCCCCCCCCCCCcchhh-hHHHH
Q 019385 111 KKRKIKGNSRLSFADDFESENEEENGEIENL---------------KTKRLAQAKLGKDPTVETSFLPDRGVED-DLSVR 174 (342)
Q Consensus 111 kk~kk~~k~~LSF~~Deee~~~~~~~~~~~~---------------~~~~~~~~k~gKnP~VdTsFLPD~~RE~-E~~~R 174 (342)
||+++.++++|||++||+++++++....... ......++|+||||+|+||||||++||+ |+++|
T Consensus 1 KK~kk~~k~kLSF~~deeeee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gkNP~VdTsfLpDk~Re~~E~~~R 80 (239)
T PF04921_consen 1 KKKKKRQKSKLSFGDDEEEEEEEEKEESKKKSKRKEEPREESKDPEDEDEQKKKKLGKNPTVDTSFLPDKEREEEEAQER 80 (239)
T ss_pred CchhhhhhccCCcCcccccccccccccccccccccccccccccCcccccccccccccCCCCCCcccCCCHHHHHHHHHHH
Confidence 4667788999999999876543221110000 0011237899999999999999999999 99999
Q ss_pred HHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCCCCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeee
Q 019385 175 ERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVK 254 (342)
Q Consensus 175 e~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGsghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVK 254 (342)
|+||+||+++ ||+||+|+|+|||||||||||||+|+||||||||+||++||++|+++|+||++||||+|||||
T Consensus 81 e~LRkE~~~~-------Qe~vK~eeI~I~fsywDGs~hrr~v~vKKGdtI~~FL~~~r~~l~~~f~el~~vsvd~LM~Vk 153 (239)
T PF04921_consen 81 EELRKEWLAK-------QEAVKAEEIEIPFSYWDGSGHRRTVRVKKGDTIWQFLEKCRKQLAKEFRELRRVSVDDLMYVK 153 (239)
T ss_pred HHHHHHHHHH-------HHHHhCCeeEEEEEEECCCCCcceEEEcCCCCHHHHHHHHHHHHHHHhHHHHhcCHhheeeec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecCCCcchhhhhhhccCCCCCCccccccCccccccccccccccCCCCceeeecceeccCCcccccCCceecCCCCCc
Q 019385 255 EDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKW 334 (342)
Q Consensus 255 eDlIIPHhytFYdfIvnKarGksGpLF~Fdv~~dvr~~~datvEkdeshagKVV~R~WYErNKHIFPASrWe~yDP~K~y 334 (342)
|||||||||||||||+|||+|||||||+||||+|+|+++|+++|+||||+||||+|+||||||||||||+||+|||+|+|
T Consensus 154 edlIiPHhy~FY~fI~nka~GksGpLF~fd~~~d~~~~~d~~~e~~~s~~~KVV~R~WYerNKHIfPAs~We~ydP~k~y 233 (239)
T PF04921_consen 154 EDLIIPHHYTFYDFIVNKARGKSGPLFDFDVHDDVRLISDAEVEKDESHAGKVVDRRWYERNKHIFPASRWEEYDPEKDY 233 (239)
T ss_pred cceeccCCceeeeeeeccccCCCCCeeeccCCccccccccccccCCCCCcceEEeehHHhhcCcccccccceecCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 019385 335 ERYTIH 340 (342)
Q Consensus 335 ~~Yti~ 340 (342)
++|||.
T Consensus 234 ~~~~~~ 239 (239)
T PF04921_consen 234 SKYTIA 239 (239)
T ss_pred hheecC
Confidence 999984
No 3
>PF15377 DUF4604: Domain of unknown function (DUF4604)
Probab=77.59 E-value=0.78 Score=40.87 Aligned_cols=17 Identities=59% Similarity=0.552 Sum_probs=11.3
Q ss_pred HhhhhhccCCCCCCccc
Q 019385 111 KKRKIKGNSRLSFADDF 127 (342)
Q Consensus 111 kk~kk~~k~~LSF~~De 127 (342)
|+++++.++.|||++||
T Consensus 142 kkk~kk~k~lLSF~dde 158 (158)
T PF15377_consen 142 KKKKKKIKSLLSFDDDE 158 (158)
T ss_pred ccccccccCCCCCCCCC
Confidence 34444466779999875
No 4
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=77.59 E-value=3.7 Score=25.97 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=19.4
Q ss_pred eEEeecCCcHHHHHHHHHHHhhHHhHhhhhc
Q 019385 215 VIQVRKGDTIGEFLRAVQQQLAPEFREIRTT 245 (342)
Q Consensus 215 ~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~v 245 (342)
+++|++|||+|....+.-- -..++..+-..
T Consensus 2 ~~~v~~gdt~~~ia~~~~~-~~~~~~~~N~~ 31 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGI-SVEELLKLNGL 31 (46)
T ss_pred EEEECCCCCHHHHHHHHCc-CHHHHHHHcCC
Confidence 5789999999998877622 12344444443
No 5
>PRK02539 hypothetical protein; Provisional
Probab=60.76 E-value=7.2 Score=32.38 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCCCC
Q 019385 168 EDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGH 212 (342)
Q Consensus 168 E~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGsgh 212 (342)
++|.++|.+||++|+.. |...+++.--.|..+ |..|.
T Consensus 23 ~eEk~Eq~~LR~eYl~~------fR~~~~~~L~~i~iv--D~~G~ 59 (85)
T PRK02539 23 GEEKVEQAKLREEYIEG------YRRSVRHHIEGIKIV--DEEGN 59 (85)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHhccceEE--CCCCC
Confidence 34889999999999997 888888877666665 66664
No 6
>PRK01546 hypothetical protein; Provisional
Probab=60.70 E-value=7.2 Score=31.93 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCCCC
Q 019385 169 DDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGH 212 (342)
Q Consensus 169 ~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGsgh 212 (342)
+|..+|.+||++|+.. |...+++.--.|..+ |..|.
T Consensus 25 eEk~Eq~~LR~eYl~~------fR~~~~~~L~~i~vv--D~~G~ 60 (79)
T PRK01546 25 EEQRERQSLREQYLKG------FRQNMLNELKGIKVV--NEQGT 60 (79)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhccceEE--CCCCC
Confidence 4889999999999997 788888876666655 76664
No 7
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=60.36 E-value=4.2 Score=27.62 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=23.4
Q ss_pred EeecCCcHHHHHHHHHHHhhHHhHhhh-hcCcCceeeeeCceecC
Q 019385 217 QVRKGDTIGEFLRAVQQQLAPEFREIR-TTSVENLLYVKEDLIIP 260 (342)
Q Consensus 217 ~vkKGdtI~~FL~k~r~~l~~ef~Elr-~vsvd~LMyVKeDlIIP 260 (342)
+|++|||+|.--.+. ..--.++.+|- .+..++ +++-.-|+||
T Consensus 2 ~V~~gDtl~~IA~~~-~~~~~~l~~~N~~~~~~~-l~~G~~l~iP 44 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRY-GISVDELMELNPNIDSDN-LQPGQKLCIP 44 (44)
T ss_dssp EE-TT--HHHHHHHT-TS-HHHHHHHCCTTHGGC-GGTTEEEEEC
T ss_pred EECcCCcHHHHHhhh-hhhHhHHHHhcCCCCccc-CCCCCEEEeC
Confidence 689999999877666 22234556665 555656 5555555555
No 8
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=58.70 E-value=5.4 Score=39.24 Aligned_cols=44 Identities=30% Similarity=0.572 Sum_probs=29.6
Q ss_pred ccCCCCCCccccccCccccc---cc--c-ccccc----------cCCCCceee--ecceecc
Q 019385 272 KARGKSGPLFHFDVHEDVRT---IA--D-ATIEK----------DESHAGKVV--ERHWYEK 315 (342)
Q Consensus 272 KarGksGpLF~Fdv~~dvr~---~~--d-atvEk----------deshagKVV--~R~WYEr 315 (342)
=|-||+|-++..--+=++|. ++ . ...|+ -=|.+|.+| +||||+|
T Consensus 83 DAAGKgG~Ikri~~~lNPR~~rvval~aPt~~E~~qwY~qRy~~~lPa~GeiviFdRSwYnr 144 (270)
T COG2326 83 DAAGKGGAIKRITEALNPRGARVVALPAPTDRERGQWYFQRYVAHLPAAGEIVIFDRSWYNR 144 (270)
T ss_pred cccCCCchhHHHhhhcCCceeEEeecCCCChHhhccHHHHHHHHhCCCCCeEEEechhhccc
Confidence 47899999998776665553 21 1 12232 256788877 7999997
No 9
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=57.11 E-value=13 Score=24.50 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=22.9
Q ss_pred eecCCcHHHHHHHHHHHhhHHhHhhhh-cCcCceeeeeCceecCC
Q 019385 218 VRKGDTIGEFLRAVQQQLAPEFREIRT-TSVENLLYVKEDLIIPH 261 (342)
Q Consensus 218 vkKGdtI~~FL~k~r~~l~~ef~Elr~-vsvd~LMyVKeDlIIPH 261 (342)
|++|||+|..=++..- -..+..++-. ++-.+.++.-.-|+||+
T Consensus 1 v~~gdtl~~IA~~~~~-~~~~l~~~N~~~~~~~~~~~g~~l~ip~ 44 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGV-DFDELIQANPQLSNPNLIYPGMKIKIPS 44 (44)
T ss_pred CCCCCCHHHHHHHHCc-CHHHHHHHhhcCCCCCCcCCCCEEecCC
Confidence 5789999986554311 1122233322 21234566666677775
No 10
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=56.14 E-value=17 Score=30.53 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=32.0
Q ss_pred cceEEeecCCcHHHHHHHHH-------HHhhHHhHhhhhcCcCceeeeeCceecC
Q 019385 213 RRVIQVRKGDTIGEFLRAVQ-------QQLAPEFREIRTTSVENLLYVKEDLIIP 260 (342)
Q Consensus 213 rr~v~vkKGdtI~~FL~k~r-------~~l~~ef~Elr~vsvd~LMyVKeDlIIP 260 (342)
..+++|++|||+|..=++.- +.+.....++-.++.+ .+++-+-|+||
T Consensus 36 ~~~~tV~~GDTLW~IA~~y~~~~~l~~~~~v~~I~~~N~l~~~-~I~~Gq~L~IP 89 (103)
T PRK14125 36 YVEITVQEGDTLWALADQYAGKHHMAKNEFIEWVEDVNNLPSG-HIKAGDKLVIP 89 (103)
T ss_pred cEEEEECCCCCHHHHHHHhCCCcCCCHHHHHHHHHHhcCCCCC-cCCCCCEEEEe
Confidence 35789999999999988762 1222333445556554 57777778888
No 11
>PF06887 DUF1265: Protein of unknown function (DUF1265); InterPro: IPR009676 This family represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be restricted to Caenorhabditis elegans.
Probab=44.76 E-value=3.8 Score=30.69 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=16.7
Q ss_pred CcCceeeeeCceecCCCcch
Q 019385 246 SVENLLYVKEDLIIPHQHSF 265 (342)
Q Consensus 246 svd~LMyVKeDlIIPHhytF 265 (342)
.-+|||||+.=|||.|..-|
T Consensus 6 N~EDl~YV~nmLivA~d~~f 25 (48)
T PF06887_consen 6 NHEDLMYVCNMLIVAHDARF 25 (48)
T ss_pred hhhhHHHHHhHheeeccccc
Confidence 45899999999999997544
No 12
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=44.74 E-value=39 Score=34.29 Aligned_cols=124 Identities=23% Similarity=0.295 Sum_probs=66.0
Q ss_pred cCCCCCC--CCCCCCCc--chhhhHHHHHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCCC--CcceEEeecCCcH
Q 019385 151 LGKDPTV--ETSFLPDR--GVEDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAG--HRRVIQVRKGDTI 224 (342)
Q Consensus 151 ~gKnP~V--dTsFLPD~--~RE~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGsg--hrr~v~vkKGdtI 224 (342)
-||+|.- -|+|.|=| .|.-..+..++-++-.... ...-+++-+.|. |.||-| .+-++..++||.|
T Consensus 212 ~gk~~~Nrk~TdFfpVRRS~RKtk~~i~~E~~~~l~~~-------vl~g~~egl~~~--~~dgKGRGv~a~~~F~rgdFV 282 (392)
T KOG1085|consen 212 SGKDVSNRKITDFFPVRRSNRKTKKQISDEAKHALRDT-------VLKGTNEGLLEV--YKDGKGRGVRAKVNFERGDFV 282 (392)
T ss_pred CCCCcccccchhccceeccchhhHHHhhHHHHHHHHHH-------HHhccccceeEE--eeccccceeEeecccccCceE
Confidence 4666652 38999977 3332222222222222222 334466666665 566654 4567778888876
Q ss_pred HHHHHHHHHHh-hHHhHhhh--hcCcCceeeeeCceecCCCcchhhhhhhccCCCCCCccccccCcc
Q 019385 225 GEFLRAVQQQL-APEFREIR--TTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHED 288 (342)
Q Consensus 225 ~~FL~k~r~~l-~~ef~Elr--~vsvd~LMyVKeDlIIPHhytFYdfIvnKarGksGpLF~Fdv~~d 288 (342)
-++-.-..... ++.+-++- .-+.--.||. .-|.--=|-.=.|+-.++-|.|.+-++...
T Consensus 283 VEY~Gdliei~eAk~rE~~Ya~De~~GcYMYy-----F~h~sk~yCiDAT~et~~lGRLINHS~~gN 344 (392)
T KOG1085|consen 283 VEYRGDLIEISEAKVREEQYANDEEIGCYMYY-----FEHNSKKYCIDATKETPWLGRLINHSVRGN 344 (392)
T ss_pred EEEecceeeechHHHHHHHhccCcccceEEEe-----eeccCeeeeeecccccccchhhhcccccCc
Confidence 55432211111 11111111 1233446764 334444555567888899999999888654
No 13
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=42.32 E-value=20 Score=23.98 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=14.8
Q ss_pred cceeHHHHHHHHHHHH
Q 019385 69 GLVTREEYVEKRVNIR 84 (342)
Q Consensus 69 GLVtl~dfk~kr~~i~ 84 (342)
|++|-+||.++++.|+
T Consensus 15 G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 15 GEISEEEYEQKKARLL 30 (31)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998875
No 14
>PF12640 UPF0489: UPF0489 domain; InterPro: IPR024131 This entry describes a family of uncharacterised proteins found in metazoa.
Probab=41.87 E-value=12 Score=32.79 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=28.0
Q ss_pred cCCCcchhhhhhhccCCC--CC-CccccccCccccc
Q 019385 259 IPHQHSFYELIVNKARGK--SG-PLFHFDVHEDVRT 291 (342)
Q Consensus 259 IPHhytFYdfIvnKarGk--sG-pLF~Fdv~~dvr~ 291 (342)
=.||+-|+.......+|+ +| -|+|+|.|.|...
T Consensus 5 d~H~~al~~w~~~~~~~~l~~~~~lvHiD~H~Dl~~ 40 (162)
T PF12640_consen 5 DDHNEALPFWYRAIGRGKLPSPNSLVHIDSHPDLRI 40 (162)
T ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCc
Confidence 369999999999888885 66 8999999999753
No 15
>PRK01631 hypothetical protein; Provisional
Probab=41.63 E-value=18 Score=29.47 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCCCC
Q 019385 169 DDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGH 212 (342)
Q Consensus 169 ~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGsgh 212 (342)
+|..+|.+||++|+.. |...+++.--.|..+ |+.|.
T Consensus 23 eE~~Eq~~LR~eYl~~------fR~~~~~~L~~i~iv--D~~G~ 58 (76)
T PRK01631 23 DEKQEQQMLRQNYTQT------FRGSLDSILLNTKIV--DQNGL 58 (76)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCceeE--CCCCC
Confidence 4889999999999997 777777776655543 55553
No 16
>PF10293 DUF2405: Domain of unknown function (DUF2405); InterPro: IPR019409 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region found within FMP27.
Probab=40.48 E-value=13 Score=33.44 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=16.2
Q ss_pred eeeeCc---eecCCCcchhhhhhh
Q 019385 251 LYVKED---LIIPHQHSFYELIVN 271 (342)
Q Consensus 251 MyVKeD---lIIPHhytFYdfIvn 271 (342)
.-|-.| +.|||||-||..|-|
T Consensus 43 i~i~~~sir~~iP~~f~~y~i~DN 66 (157)
T PF10293_consen 43 IDISTDSIRFRIPHQFVFYRIFDN 66 (157)
T ss_pred EEEEcCEEEEEcCCceeHHHHHHH
Confidence 344444 679999999999876
No 17
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=37.30 E-value=32 Score=36.44 Aligned_cols=44 Identities=27% Similarity=0.239 Sum_probs=34.1
Q ss_pred HHHHHHHHhHhcCCCCchhhhcccC---CceEEEEEeecCCCCcceEEeecCCcHHHHHHHH
Q 019385 173 VRERQRSNLSVNGCSDSGFVSRSKF---EPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAV 231 (342)
Q Consensus 173 ~Re~LRkE~~~~~~~~~~~Qe~iK~---eeI~ItfsYwDGsghrr~v~vkKGdtI~~FL~k~ 231 (342)
+-+.|+.+.... |..+.+ -++.|.|.=|||+|- |.+|..++...
T Consensus 18 ~l~~l~~~L~~L-------Q~~l~~~~~~~vlIv~eG~DaaGK--------g~~I~~l~~~l 64 (493)
T TIGR03708 18 QVPDLREALLDL-------QYELLESAGFPVIILIEGWDGAGK--------GETINLLNEWM 64 (493)
T ss_pred HHHHHHHHHHHH-------HHHHHHccCCeEEEEEeCCCCCCh--------HHHHHHHHHHh
Confidence 346777788888 887755 589999999999995 77887776554
No 18
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=36.86 E-value=43 Score=26.58 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.4
Q ss_pred CCCcceEEeecCCcHHHHHHHHHH
Q 019385 210 AGHRRVIQVRKGDTIGEFLRAVQQ 233 (342)
Q Consensus 210 sghrr~v~vkKGdtI~~FL~k~r~ 233 (342)
-|++-+|.|+.|.||.+.|.++.+
T Consensus 8 ng~~t~V~vrpg~ti~d~L~~~c~ 31 (72)
T cd01760 8 NGQRTVVPVRPGMSVRDVLAKACK 31 (72)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHH
Confidence 367789999999999999999876
No 19
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=36.72 E-value=35 Score=26.62 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=20.1
Q ss_pred CCCcceEEeecCCcHHHHHHHHHH
Q 019385 210 AGHRRVIQVRKGDTIGEFLRAVQQ 233 (342)
Q Consensus 210 sghrr~v~vkKGdtI~~FL~k~r~ 233 (342)
-|.+-.|.|+.|.||.++|.++.+
T Consensus 9 ~~q~t~V~vrpg~ti~d~L~~~~~ 32 (71)
T PF02196_consen 9 NGQRTVVQVRPGMTIRDALSKACK 32 (71)
T ss_dssp TTEEEEEEE-TTSBHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCHHHHHHHHHH
Confidence 356678999999999999999987
No 20
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 2ZJR_D 2ZJP_D 3PIO_D 3CF5_D 2ZJQ_D 3DLL_D 3PIP_D 2WDL_G 3UZN_G ....
Probab=36.20 E-value=28 Score=28.75 Aligned_cols=55 Identities=20% Similarity=0.442 Sum_probs=34.9
Q ss_pred eEEeecCCcHHHHHHHHHHHhhH---HhHhhhhcCcC---ceeeeeCceecCCCcchhhhhhh
Q 019385 215 VIQVRKGDTIGEFLRAVQQQLAP---EFREIRTTSVE---NLLYVKEDLIIPHQHSFYELIVN 271 (342)
Q Consensus 215 ~v~vkKGdtI~~FL~k~r~~l~~---ef~Elr~vsvd---~LMyVKeDlIIPHhytFYdfIvn 271 (342)
.|+++ |..++.||+++....-+ +|+.+..-+.| |+=|.=+|.|+=.-.+ ||...+
T Consensus 5 kvTLR-g~~m~~FL~kli~~vlPrik~f~g~~~~~fd~~Gn~sfGi~e~~~Fpei~-yd~~~~ 65 (95)
T PF00673_consen 5 KVTLR-GKKMYEFLDKLITIVLPRIKDFKGLKASSFDNSGNFSFGIKEHILFPEIE-YDPFPG 65 (95)
T ss_dssp EEEEE-HHHHHHHHHHHHHTTTTTSSSTSSBSSTTBSSSSEEEEEESSSSSSSSSS-STSSSS
T ss_pred EEEEc-cHHHHHHHHHHHHHhhhhcccccccCccccCCCceEEEEeeeeeecCCcc-ccCCCC
Confidence 45666 99999999999998544 47766666666 3544434444333344 666554
No 21
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=36.00 E-value=61 Score=31.63 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHHHHhHhcCCCCchhhhcccC---CceEEEEEeecCCCCcceEEeecCCcHHHHH
Q 019385 167 VEDDLSVRERQRSNLSVNGCSDSGFVSRSKF---EPLQITYSYWDGAGHRRVIQVRKGDTIGEFL 228 (342)
Q Consensus 167 RE~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~---eeI~ItfsYwDGsghrr~v~vkKGdtI~~FL 228 (342)
.++=.+.-.+|+.+.... |..+.+ -++.|.|.=|||||. |.+|...+
T Consensus 28 k~~y~~~l~~l~~~L~~L-------Q~~l~~~~~~~vlIv~eG~DaAGK--------G~~I~~l~ 77 (264)
T TIGR03709 28 KEEAEALLAELVARLSDL-------QEKLYAEGRRSLLLVLQAMDAAGK--------DGTIRHVM 77 (264)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHcCCCcEEEEEECCCCCCc--------hHHHHHHH
Confidence 444333568899999999 988876 389999999999995 66665544
No 22
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=35.19 E-value=17 Score=28.72 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHhHhcCCCCchhhhcccCCceEEEE
Q 019385 169 DDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITY 204 (342)
Q Consensus 169 ~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~eeI~Itf 204 (342)
+|..+|.+||++|+.. |...+++.--.|..
T Consensus 22 eE~~Eq~~LR~eYl~~------fR~~~~~~L~~i~i 51 (65)
T PF05979_consen 22 EEKAEQAELRQEYLQN------FRGNFRSQLENIKI 51 (65)
T ss_dssp HHHHHHHHHHHHHHHT------THHHHHHCSSTT--
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcceeE
Confidence 4888999999999998 67777666555543
No 23
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=33.81 E-value=25 Score=30.90 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=30.7
Q ss_pred hhhcccCCceEEEEEeecCCCCcceEEeecCCcHHH
Q 019385 191 FVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGE 226 (342)
Q Consensus 191 ~Qe~iK~eeI~ItfsYwDGsghrr~v~vkKGdtI~~ 226 (342)
|...+.-..|.|.++|.|-|=.+..|.|+-|++...
T Consensus 43 f~k~v~i~~l~i~~~~~DeSYtP~~I~V~~G~~~~d 78 (129)
T cd08159 43 MKKDVLIRVLAIFVDMADSSYMPSLVVVYGGHSPSD 78 (129)
T ss_pred EcCCcEEEEEEEEecCCCCCcCCcEEEEEecCCHHH
Confidence 356677778999999999999999999999999543
No 24
>PHA03162 hypothetical protein; Provisional
Probab=32.14 E-value=35 Score=30.57 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCCCCcHhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCC------------------CCccccccc-hHHHHHhhhc
Q 019385 5 GDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQP------------------GLLQFGSST-SEILETAFKK 65 (342)
Q Consensus 5 ~~~y~g~~~e~~r~~~l~kqRe~~~~~~e~~k~~~~~~~~~~------------------~~~~~f~~~-~d~~E~~lk~ 65 (342)
+.|-+|..-.+.=...|.++=.+-+-|--.+|++|.....-. ...++|+++ ..-+|+.+.+
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe~KVr~ 81 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIEAKIRH 81 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444445566665555556667888885443221 112444444 3345555555
Q ss_pred ccccceeHHHHH
Q 019385 66 ETVGLVTREEYV 77 (342)
Q Consensus 66 ~TVGLVtl~dfk 77 (342)
.|-.|||.++|-
T Consensus 82 ~t~~~vTk~e~e 93 (135)
T PHA03162 82 ETLKATTKEEFE 93 (135)
T ss_pred HhhccccHHHHH
Confidence 555555555543
No 25
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=30.21 E-value=48 Score=32.78 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=25.9
Q ss_pred HHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCC
Q 019385 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGA 210 (342)
Q Consensus 174 Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGs 210 (342)
-++||++||.. .....-+|..+||.+|--
T Consensus 17 t~~lr~~fli~--------~lf~~~~~~~~y~h~dr~ 45 (276)
T PRK00924 17 TEGLREEFLIE--------KLFVADEITLVYSHYDRI 45 (276)
T ss_pred HHHHHHhhhHh--------hccCCCeEEEEEEEeeeE
Confidence 58999999996 888889999999999964
No 26
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=28.75 E-value=1.1e+02 Score=26.82 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=51.7
Q ss_pred CCceEEEEEeecCCCCcceEEeecCCcHHHHHHHHHHHhhHHhH-hhhhc--CcCceeeeeCceecCCCcchhhhh
Q 019385 197 FEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFR-EIRTT--SVENLLYVKEDLIIPHQHSFYELI 269 (342)
Q Consensus 197 ~eeI~ItfsYwDGsghrr~v~vkKGdtI~~FL~k~r~~l~~ef~-Elr~v--svd~LMyVKeDlIIPHhytFYdfI 269 (342)
.+.|+|-|--+|||.+. --++..-+||+..=++... ++. ++-.+ .++++.+|-..-||-+..|.-++-
T Consensus 2 ~~~~e~kfrl~dg~dig-p~~~~~sdTV~~lKekI~~----~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~ 72 (113)
T cd01814 2 EEQIEIKFRLYDGSDIG-PKRYPAATTVDFLKERVVS----QWPKDKEVGPKTVNEVKLISAGKILENSKTVGECR 72 (113)
T ss_pred CccEEEEEEccCCCccC-ccccChhhHHHHHHHHHHH----hcccccccCCCCHHHeEEEeCCeecCCCCcHHHhC
Confidence 37899999999999652 2456789999987766654 333 22334 499999999999999999988774
No 27
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.84 E-value=3.1e+02 Score=31.57 Aligned_cols=71 Identities=27% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCcHhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCccccccchHHHHHhhhcccccceeHHHHHHHHHHHHHhHH
Q 019385 9 VGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRNKIE 88 (342)
Q Consensus 9 ~g~~~e~~r~~~l~kqRe~~~~~~e~~k~~~~~~~~~~~~~~~f~~~~d~~E~~lk~~TVGLVtl~dfk~kr~~i~e~~e 88 (342)
+|.+.=-.|-..|+.|-.+++++.+++...-++-... +..|..-|.+ +-|+-=-.|+.+|..|+|
T Consensus 324 kGqaELerRRq~leeqqqreree~eqkEreE~ekker-----------erqEqErk~q----lElekqLerQReiE~qrE 388 (1118)
T KOG1029|consen 324 KGQAELERRRQALEEQQQREREEVEQKEREEEEKKER-----------ERQEQERKAQ----LELEKQLERQREIERQRE 388 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4556555565666666555555555433222111111 2233333322 233434456667777776
Q ss_pred HHHHHH
Q 019385 89 EEEKEK 94 (342)
Q Consensus 89 ~e~~~~ 94 (342)
+|++..
T Consensus 389 Eerkke 394 (1118)
T KOG1029|consen 389 EERKKE 394 (1118)
T ss_pred HHHHHH
Confidence 665443
No 28
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=27.82 E-value=61 Score=26.61 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=29.4
Q ss_pred CCCcceEEeecCCcHHHHHHHHHH--Hhh--HHhHhhhhcCcCceeee
Q 019385 210 AGHRRVIQVRKGDTIGEFLRAVQQ--QLA--PEFREIRTTSVENLLYV 253 (342)
Q Consensus 210 sghrr~v~vkKGdtI~~FL~k~r~--~l~--~ef~Elr~vsvd~LMyV 253 (342)
-|++-+|.|+.|+|+.+||+.|=+ +|- .-|-.|+....+|-||.
T Consensus 8 n~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~~~~ 55 (77)
T cd01818 8 DNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENHEYF 55 (77)
T ss_pred CCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCccEE
Confidence 477889999999999999998643 332 22444555544555543
No 29
>smart00455 RBD Raf-like Ras-binding domain.
Probab=27.20 E-value=78 Score=24.70 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.0
Q ss_pred CCCcceEEeecCCcHHHHHHHHHH
Q 019385 210 AGHRRVIQVRKGDTIGEFLRAVQQ 233 (342)
Q Consensus 210 sghrr~v~vkKGdtI~~FL~k~r~ 233 (342)
-|.+-+|.+|.|.||.+.|.++.+
T Consensus 8 ~~~~~~V~vrpg~tl~e~L~~~~~ 31 (70)
T smart00455 8 DNQRTVVKVRPGKTVRDALAKALK 31 (70)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Confidence 356778999999999999999876
No 30
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=27.06 E-value=84 Score=27.63 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=27.1
Q ss_pred ceEEeecCCcHHHHHHHHHHHhhHHhHhhhh-----cCcCceeeeeCceecC
Q 019385 214 RVIQVRKGDTIGEFLRAVQQQLAPEFREIRT-----TSVENLLYVKEDLIIP 260 (342)
Q Consensus 214 r~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~-----vsvd~LMyVKeDlIIP 260 (342)
...+|++|||+|.--.+.--.. ....+|.. ++-.+.+|.-.-|+||
T Consensus 96 ~~y~Vk~GDTL~~IA~~~~g~~-~~~~~I~~~N~~~l~~~~~I~pGq~L~IP 146 (147)
T PRK11198 96 QFYTVKSGDTLSAIAKKVYGNA-NKYNKIFEANKPMLKSPDKIYPGQVLRIP 146 (147)
T ss_pred eEEEECCCCCHHHHHHHHcCCh-hhHHHHHHhhhhcCCCcCCcCcCCEEecC
Confidence 3567999999999666642110 11223322 3445567776667777
No 31
>smart00257 LysM Lysin motif.
Probab=26.99 E-value=79 Score=19.29 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=13.1
Q ss_pred EEeecCCcHHHHHHHH
Q 019385 216 IQVRKGDTIGEFLRAV 231 (342)
Q Consensus 216 v~vkKGdtI~~FL~k~ 231 (342)
++|+.|||+|....+.
T Consensus 2 ~~v~~gdt~~~ia~~~ 17 (44)
T smart00257 2 YTVKKGDTLSSIARRY 17 (44)
T ss_pred eEeCCCCCHHHHHHHh
Confidence 6799999999877653
No 32
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=26.11 E-value=1.7e+02 Score=18.58 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=29.4
Q ss_pred CCCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeeeCceecCCC
Q 019385 210 AGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQ 262 (342)
Q Consensus 210 sghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVKeDlIIPHh 262 (342)
.|...++.+..+.||.++++.+.... . ++.+...++-..-+++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~----~----~~~~~~~l~~~~~~~~~~ 50 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKL----G----LPPEQQRLLVNGKILPDS 50 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH----C----cChHHeEEEECCeECCCC
Confidence 34456788889999999999987732 2 556555544444444433
No 33
>TIGR02907 spore_VI_D stage VI sporulation protein D. SpoVID, the stage VI sporulation protein D, is restricted to endospore-forming members of the bacteria, all of which are found among the Firmicutes. It is widely distributed but not quite universal in this group. Between well-conserved N-terminal and C-terminal domains is a poorly conserved, low-complexity region of variable length, rich enough in glutamic acid to cause spurious BLAST search results unless a filter is used. The seed alignment for this model was trimmed, in effect, by choosing member sequences in which these regions are relatively short. SpoVID is involved in spore coat assembly by the mother cell compartment late in the process of sporulation.
Probab=24.01 E-value=83 Score=32.12 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=27.7
Q ss_pred ceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeeeCceecC
Q 019385 214 RVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIP 260 (342)
Q Consensus 214 r~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVKeDlIIP 260 (342)
+.++|++|||+|..=.+..- -...-..|-.++ .+.|.+=.-|+||
T Consensus 294 ~~YiVq~GDTL~sIAkRYGV-SV~~L~r~N~L~-~~~L~~GQ~L~IP 338 (338)
T TIGR02907 294 RMCIVQEGDTIETIAERYEI-SVSQLIRHNQLE-DFEVNEGQILYIP 338 (338)
T ss_pred EEEEECCCCCHHHHHHHHCc-CHHHHHHHhCCC-ccccCCCCEEEeC
Confidence 46889999999985554422 223445555555 5566655556666
No 34
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=23.75 E-value=41 Score=35.71 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=32.0
Q ss_pred CCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeeeCceecCCC
Q 019385 211 GHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQ 262 (342)
Q Consensus 211 ghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVKeDlIIPHh 262 (342)
-+..++.|++|||+|..=++. -+-..+..+|-.+. .+++++=+-|+||-.
T Consensus 25 asa~tytVq~GDTLw~IA~~y-gvtv~~I~~~N~l~-~~~I~~Gq~L~Ip~~ 74 (481)
T PRK13914 25 ASASTVVVEAGDTLWGIAQSK-GTTVDAIKKANNLT-TDKIVPGQKLQVNEV 74 (481)
T ss_pred ccCceEEECCCCCHHHHHHHH-CCCHHHHHHHhCCC-cccccCCCEEEeCCC
Confidence 345678999999999954443 22233445554443 456788777888864
No 35
>PF01359 Transposase_1: Transposase (partial DDE domain); InterPro: IPR001888 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the mariner transposase []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3HOT_B 3HOS_A 3K9K_B 3F2K_B 3K9J_B 2F7T_A.
Probab=23.45 E-value=73 Score=25.64 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=25.4
Q ss_pred EEEEeecCCCCcceEEeecCCcH-----HHHHHHHHHHhhHHhHh
Q 019385 202 ITYSYWDGAGHRRVIQVRKGDTI-----GEFLRAVQQQLAPEFRE 241 (342)
Q Consensus 202 ItfsYwDGsghrr~v~vkKGdtI-----~~FL~k~r~~l~~ef~E 241 (342)
+-=+|||-.|+=-..-+..|.|| -+.|++..+.|+.-.++
T Consensus 32 Ml~vwWd~~Gvi~~e~L~~~~TIts~~Y~~ql~~l~~~l~~krp~ 76 (81)
T PF01359_consen 32 MLSVWWDAKGVIHYELLPPGKTITSEYYCQQLDKLKQALREKRPE 76 (81)
T ss_dssp EEEEEEETTEEEEEEEESTT---SHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEeeccCcEeeeeCCCCccccHHHHHHHHHHHHHHHHHhChH
Confidence 33479999998778889999999 24566666666443433
No 36
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=22.94 E-value=1.3e+02 Score=29.44 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=18.2
Q ss_pred cCCCCchhhhcccCCceEEEEEeecCC
Q 019385 184 NGCSDSGFVSRSKFEPLQITYSYWDGA 210 (342)
Q Consensus 184 ~~~~~~~~Qe~iK~eeI~ItfsYwDGs 210 (342)
-|||.+.=...-..+...|+|.+|+|.
T Consensus 18 ~gCg~~~~~~~~~~~~~~i~~~~~~~~ 44 (437)
T TIGR03850 18 AGCGSGTADGASTGEEVTLKVAAFEGG 44 (437)
T ss_pred hhccCCCCCCCCCCCCceEEEEEecCC
Confidence 489875433333456788999888764
No 37
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=22.89 E-value=1.6e+02 Score=25.18 Aligned_cols=69 Identities=12% Similarity=0.280 Sum_probs=50.2
Q ss_pred CceEEEEEeecCCCCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeeeCceecCCCcchhhh
Q 019385 198 EPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYEL 268 (342)
Q Consensus 198 eeI~ItfsYwDGsghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVKeDlIIPHhytFYdf 268 (342)
+.|+|.|-+.||+. .+...+-..+||+..=++.+.+--.+..+ +-.++.+|-+|.-.=||.-.-|.=+.
T Consensus 1 ~~i~lkf~l~~G~d-~~~~~~~~~~TV~~lKe~i~~~WP~d~~~-~p~s~~~lRLI~~GriL~d~~tL~~~ 69 (111)
T PF13881_consen 1 DKIELKFRLADGKD-IGPFRFDPSTTVADLKERIWAEWPEDWEE-RPKSPSDLRLIYAGRILEDNKTLSDC 69 (111)
T ss_dssp TSEEEEEEETTS-E-EEEEEE-TTSBHHHHHHHHHHSSSTTSSS-TT-SGGGEEEEETTEEE-SSSBTGGG
T ss_pred CeEEEEEEEeCCCc-ccccccCccChHHHHHHHHHHHCcccccc-CCCChhhEEEEeCCeecCCcCcHHHh
Confidence 46899999998885 45678899999999887777655444444 56789999999988888877776443
No 38
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=22.72 E-value=2.1e+02 Score=27.23 Aligned_cols=51 Identities=25% Similarity=0.474 Sum_probs=39.1
Q ss_pred CCceEEEEE-----------eecCCCCcceEEeecCC--cHHHHHHHHHHHhhHHhHhhhhc-CcCceeeeeC
Q 019385 197 FEPLQITYS-----------YWDGAGHRRVIQVRKGD--TIGEFLRAVQQQLAPEFREIRTT-SVENLLYVKE 255 (342)
Q Consensus 197 ~eeI~Itfs-----------YwDGsghrr~v~vkKGd--tI~~FL~k~r~~l~~ef~Elr~v-svd~LMyVKe 255 (342)
.-.++|+|+ ||-|+|- |+ .|..||+++--+++....++-.+ .|--.-||..
T Consensus 58 ~l~vqiS~V~vt~dFS~~~vYWm~~~~--------geN~e~e~~L~rs~~~~rh~l~~~~~~g~vP~IkFV~D 122 (207)
T KOG4700|consen 58 RLQVQISRVRVTRDFSQVSVYWMCRGD--------GENSEIEDFLERSKHQIRHRLEESIGIGTVPEIKFVGD 122 (207)
T ss_pred hcceeEEEEEeccchhhheeEEEecCC--------ccHHHHHHHHHHHHHHHHHHHHHHhccccCCceEEecc
Confidence 335677775 9999886 44 79999999999998888887776 5666667653
No 39
>PF06652 Methuselah_N: Methuselah N-terminus; InterPro: IPR010596 Drosophila Methuselah (Mth) mutants have a 35% increase in average lifespan and increased resistance to several forms of stress, including heat, starvation, and oxidative damage. The protein affected by this mutation is related to G protein-coupled receptors of the secretin receptor family. Mth, like secretin receptor family members, has a large N-terminal ectodomain, which may constitute the ligand binding site []. This entry represents the N-terminal region of the Drosophila specific Methuselah protein.; GO: 0004930 G-protein coupled receptor activity, 0006950 response to stress; PDB: 2PZX_C 1FJR_A.
Probab=22.58 E-value=32 Score=31.46 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=14.9
Q ss_pred eeeeCceecCCCcc-hhhh
Q 019385 251 LYVKEDLIIPHQHS-FYEL 268 (342)
Q Consensus 251 MyVKeDlIIPHhyt-FYdf 268 (342)
=|+-+++|||.|+| -|||
T Consensus 19 sy~y~~i~iP~~l~~~ydy 37 (179)
T PF06652_consen 19 SYLYEGILIPAELTGEYDY 37 (179)
T ss_dssp -EEETTEEE-GGGEEEEEE
T ss_pred CEEECCEEEChHHeEEEeE
Confidence 48999999999998 8888
No 40
>COG4927 Predicted choloylglycine hydrolase [General function prediction only]
Probab=21.60 E-value=53 Score=33.05 Aligned_cols=57 Identities=32% Similarity=0.396 Sum_probs=40.3
Q ss_pred ecCCCcchhhhhhh---ccCCCCCCcc--ccccCccccccccccccccCCCCceeeecceeccCCcccccCCce
Q 019385 258 IIPHQHSFYELIVN---KARGKSGPLF--HFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWE 326 (342)
Q Consensus 258 IIPHhytFYdfIvn---KarGksGpLF--~Fdv~~dvr~~~datvEkdeshagKVV~R~WYErNKHIFPASrWe 326 (342)
.+-|||-|=+.--. --.||+||.| +||-|.++--..|.+-+..||-. +-|=||+||-
T Consensus 86 f~~~hyrft~d~ycs~~v~~gk~~~~~~RN~Dy~p~i~~~rdstf~~t~Sgl------------~~Ig~~~r~~ 147 (336)
T COG4927 86 FVAHHYRFTPDAYCSQSVWLGKGGPALIRNFDYPPSIVSDRDSTFEMTESGL------------KVIGKAQRWG 147 (336)
T ss_pred hhheeeeeccccccceeeecCCCCceEeecCCCCcceeccccceeeeccCCh------------heeechheee
Confidence 35678877554332 2379999877 59999887777788888888764 3466777774
No 41
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.45 E-value=65 Score=26.39 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHhHhcCCCCchhhhcccCCceEEE
Q 019385 168 EDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQIT 203 (342)
Q Consensus 168 E~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~eeI~It 203 (342)
++|..+++.||++|+.. |...+|+.-=.|+
T Consensus 23 eeEk~eQ~~LR~eYl~~------fr~~vk~~l~~ik 52 (77)
T COG4224 23 EEEKKEQAKLRREYLES------FRGQVKNQLENIK 52 (77)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHhhccee
Confidence 45888999999999987 6777776543333
No 42
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.25 E-value=37 Score=32.56 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCCccccccchHHHHHhhhc-------ccccceeHH
Q 019385 46 PGLLQFGSSTSEILETAFKK-------ETVGLVTRE 74 (342)
Q Consensus 46 ~~~~~~f~~~~d~~E~~lk~-------~TVGLVtl~ 74 (342)
.-++++|.+|-|++|-.|.. +||||+++-
T Consensus 20 Dy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~ 55 (243)
T COG5148 20 DYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLV 55 (243)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecc
Confidence 34689999999999999874 699999863
No 43
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=20.28 E-value=1e+02 Score=24.39 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=17.5
Q ss_pred eecCCCCcceEEeecCCcHHHHHHHHH
Q 019385 206 YWDGAGHRRVIQVRKGDTIGEFLRAVQ 232 (342)
Q Consensus 206 YwDGsghrr~v~vkKGdtI~~FL~k~r 232 (342)
++|| +.|.+..|+||.++|.++-
T Consensus 7 ~idG----~~v~~~~G~til~al~~~g 29 (82)
T PF13510_consen 7 TIDG----KPVEVPPGETILEALLAAG 29 (82)
T ss_dssp EETT----EEEEEEET-BHHHHHHHTT
T ss_pred EECC----EEEEEcCCCHHHHHHHHCC
Confidence 4566 6799999999999887763
Done!