Query 019385
Match_columns 342
No_of_seqs 142 out of 171
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvd_A UPF0291 protein YNZC; s 59.4 5.7 0.00019 29.4 2.5 25 168-198 24-48 (54)
2 1wxq_A GTP-binding protein; st 49.2 10 0.00034 36.7 3.1 65 174-239 289-366 (397)
3 2djp_A Hypothetical protein SB 47.4 11 0.00038 27.7 2.5 47 214-261 16-62 (77)
4 1e0g_A Membrane-bound lytic mu 46.9 13 0.00044 24.4 2.5 18 214-231 3-20 (48)
5 2l9y_A CVNH-LYSM lectin; carbo 45.5 13 0.00044 32.2 3.0 51 210-261 59-109 (167)
6 2v7q_J ATPase inhibitor; ION t 43.0 23 0.0008 27.1 3.7 29 15-43 23-53 (66)
7 2hep_A UPF0291 protein YNZC; S 41.5 13 0.00044 29.8 2.1 38 168-211 24-61 (85)
8 3bhp_A UPF0291 protein YNZC; N 39.1 17 0.00058 27.3 2.3 17 168-184 24-40 (60)
9 2bb6_A TCII, TC II, transcobal 35.4 26 0.00088 34.9 3.7 67 198-271 315-387 (414)
10 3rhf_A Putative polyphosphate 29.3 24 0.00083 33.6 2.2 60 157-231 31-99 (289)
11 2pmv_A Gastric intrinsic facto 28.8 42 0.0014 33.3 3.9 71 198-272 292-374 (399)
12 1gmj_A ATPase inhibitor; coile 24.1 58 0.002 25.9 3.2 25 15-39 23-49 (84)
13 1ywk_A 4-deoxy-L-threo-5-hexos 23.0 33 0.0011 32.7 1.9 43 174-224 22-70 (289)
14 2al3_A TUG long isoform; TUG U 22.7 70 0.0024 25.6 3.5 31 205-235 13-43 (90)
15 4hhu_A OR280; engineered prote 22.4 1.8E+02 0.006 25.0 6.1 64 161-243 49-112 (170)
16 2gib_A Nucleocapsid protein; d 20.4 1.2E+02 0.0042 24.9 4.5 34 194-235 57-91 (103)
No 1
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=59.37 E-value=5.7 Score=29.38 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHhHhcCCCCchhhhcccCC
Q 019385 168 EDDLSVRERQRSNLSVNGCSDSGFVSRSKFE 198 (342)
Q Consensus 168 E~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~e 198 (342)
++|..++..||++|+.. |...++++
T Consensus 24 ~eEk~EQ~~LR~eYl~~------fR~~~r~~ 48 (54)
T 2jvd_A 24 EEEKAEQQKLRQEYLKG------FRSSMKLE 48 (54)
T ss_dssp HHHHHHHHHHHHHHHTT------CCCTTTTC
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHhhh
Confidence 34888999999999987 66666654
No 2
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=49.15 E-value=10 Score=36.74 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=47.8
Q ss_pred HHHHHHHhHhcCCCCchhhhccc-C--CceEEEEEee--------cCCC--CcceEEeecCCcHHHHHHHHHHHhhHHh
Q 019385 174 RERQRSNLSVNGCSDSGFVSRSK-F--EPLQITYSYW--------DGAG--HRRVIQVRKGDTIGEFLRAVQQQLAPEF 239 (342)
Q Consensus 174 Re~LRkE~~~~~~~~~~~Qe~iK-~--eeI~ItfsYw--------DGsg--hrr~v~vkKGdtI~~FL~k~r~~l~~ef 239 (342)
.|-||.+|+.. .+.||+|..|+ . +.+.+.|+|= +..| ..+.+.+++|.|+.+|-.+.-..+.+.|
T Consensus 289 ~e~ire~~l~~-~g~~g~~~~i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f 366 (397)
T 1wxq_A 289 LMVIKEKVLDR-FGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGF 366 (397)
T ss_dssp TTHHHHHHTSS-SSSCSHHHHHHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTE
T ss_pred HHHHHHHHHHH-hCcchHHHHHHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhh
Confidence 36788777765 56899999996 3 5788888887 3455 3478999999999999887755444444
No 3
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.45 E-value=11 Score=27.72 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=30.3
Q ss_pred ceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeeeCceecCC
Q 019385 214 RVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPH 261 (342)
Q Consensus 214 r~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVKeDlIIPH 261 (342)
.+.+|++|||+|..-.+.-- -..+..+|-.+.-.+.+++-.-|+||-
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~-~~~~l~~~N~l~~~~~l~~Gq~l~iP~ 62 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGV-TMEQIKRANRLYTNDSIFLKKTLYIPI 62 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTC-CHHHHHHHHTCCCSSCGGGSSCEEEEE
T ss_pred EEEEECCCCcHHHHHHHHCc-CHHHHHHHcCCCCccccCCCCEEEECC
Confidence 35679999999997665421 123444455554456677777788883
No 4
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=46.95 E-value=13 Score=24.44 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=14.6
Q ss_pred ceEEeecCCcHHHHHHHH
Q 019385 214 RVIQVRKGDTIGEFLRAV 231 (342)
Q Consensus 214 r~v~vkKGdtI~~FL~k~ 231 (342)
.+.+|++|||+|..-.+.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~ 20 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRH 20 (48)
T ss_dssp CEEEECTTCCHHHHHHHH
T ss_pred EEEEEcCCCcHHHHHHHH
Confidence 357899999999987665
No 5
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=45.50 E-value=13 Score=32.16 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=37.8
Q ss_pred CCCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeeeCceecCC
Q 019385 210 AGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPH 261 (342)
Q Consensus 210 sghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVKeDlIIPH 261 (342)
+++..+-+|++|||.|..-.+- -+--.+...|-.+.--+++|+=.-|.||.
T Consensus 59 ~~~~~~y~V~~GDTL~~IA~~~-~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~ 109 (167)
T 2l9y_A 59 GGGTATVTVQQGDTLRDIGRRF-DCDFHEIARRNNIQNEDLIYPGQVLQVPT 109 (167)
T ss_dssp CCSCEEEEECTTCCHHHHHHHT-TCCHHHHHHHHTCCGGGCCCTTEEEEESC
T ss_pred CCCCceEEECCCCcHHHHHHHc-CCCHHHHHHHcCCCCcccccCCCEEEEcC
Confidence 4567889999999999887764 22234445555566668999999999995
No 6
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide, inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus} SCOP: h.4.8.1
Probab=43.01 E-value=23 Score=27.08 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhcccccc
Q 019385 15 AVRIRRLEKQ--REAERRKIQELKTKSVSDK 43 (342)
Q Consensus 15 ~~r~~~l~kq--Re~~~~~~e~~k~~~~~~~ 43 (342)
+.|..+.+-. |.+++++|..||++|+++.
T Consensus 23 GKrEaA~Ee~Yfrk~ekEQL~~LKkkl~eq~ 53 (66)
T 2v7q_J 23 GKREQAEEERYFRARAKEQLAALKKHHENEI 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777 8888999999999997754
No 7
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=41.55 E-value=13 Score=29.77 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCCC
Q 019385 168 EDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAG 211 (342)
Q Consensus 168 E~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGsg 211 (342)
++|..++..||++|+.. |...+++.--.|..+==||+.
T Consensus 24 ~eEk~EQ~~LR~eYl~~------fR~~~r~~L~~ikivD~~G~d 61 (85)
T 2hep_A 24 EEEKAEQQKLRQEYLKG------FRSSMKNTLKSVKIIDPEGND 61 (85)
T ss_dssp HHHHHHHHHHHHHHHHH------CC-------------------
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHhcceeEECCCCCc
Confidence 34888999999999997 788888887777766555544
No 8
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=39.10 E-value=17 Score=27.31 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHhHhc
Q 019385 168 EDDLSVRERQRSNLSVN 184 (342)
Q Consensus 168 E~E~~~Re~LRkE~~~~ 184 (342)
++|..++..||++|+..
T Consensus 24 ~eEk~EQ~~LR~eYl~~ 40 (60)
T 3bhp_A 24 EEEKAEQQKLRQEYLKG 40 (60)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34888999999999986
No 9
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=35.38 E-value=26 Score=34.95 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=46.1
Q ss_pred CceEEEEEeecCC-CCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcC-----cCceeeeeCceecCCCcchhhhhhh
Q 019385 198 EPLQITYSYWDGA-GHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTS-----VENLLYVKEDLIIPHQHSFYELIVN 271 (342)
Q Consensus 198 eeI~ItfsYwDGs-ghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vs-----vd~LMyVKeDlIIPHhytFYdfIvn 271 (342)
+.|.|+|.=|... ....+|.|++|+++-..|.++.+. +.|+-=..-+ +.-++=++++ ..+|.-|.++
T Consensus 315 ~~I~VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~e~--~~F~F~~~es~~G~fItSInG~~~~-----~~~YW~l~~~ 387 (414)
T 2bb6_A 315 KFIDVLLKVSGISPSYRHSVSVPAGSSLEDILKNAQEH--GRFRFRTQASLSGPFLTSVLGRKAG-----EREFWQVLRD 387 (414)
T ss_dssp CEEEEEEEEESSSSCEEEEEEEETTCCHHHHHHHHHHS--SSCCEEEECCTTSCEEEEETTEECC-----TTEEEEEEET
T ss_pred ceEEEEEEEeeCCCccceEEEecCCCCHHHHHHHHHhc--cCCceEeeecCCCceEEEECCCccC-----CCceEEEEEC
Confidence 4689999999433 235799999999999999999986 3454322221 2223335666 6777777777
No 10
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=29.34 E-value=24 Score=33.57 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=42.2
Q ss_pred CCCCCCCCc--chhhhHHHHHHHHHHhHhcCCCCchhhhcccC-------CceEEEEEeecCCCCcceEEeecCCcHHHH
Q 019385 157 VETSFLPDR--GVEDDLSVRERQRSNLSVNGCSDSGFVSRSKF-------EPLQITYSYWDGAGHRRVIQVRKGDTIGEF 227 (342)
Q Consensus 157 VdTsFLPD~--~RE~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~-------eeI~ItfsYwDGsghrr~v~vkKGdtI~~F 227 (342)
++|..-|.- ..++-.++-++|+.+.... |..+.+ -.+.|.|.=|||+|- |.+|..+
T Consensus 31 ~~~~~~~~~~~~k~~y~~~l~~L~~~L~~l-------Q~~l~~~~~~~~~~~vlIvfEG~DaAGK--------gg~Ik~l 95 (289)
T 3rhf_A 31 VDPESTPGYTGVKADGKALLAAQDARLAEL-------QEKLFAEGKFGNPKRLLLILQAMDTAGK--------GGIVSHV 95 (289)
T ss_dssp CCTTCCTTCCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTCCCEEEEEEEECTTSSH--------HHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-------HHHHHhcCCccCCCcEEEEEECCCCCCh--------HHHHHHH
Confidence 344444442 4555334567889999998 998876 469999999999994 7777666
Q ss_pred HHHH
Q 019385 228 LRAV 231 (342)
Q Consensus 228 L~k~ 231 (342)
.+..
T Consensus 96 ~~~l 99 (289)
T 3rhf_A 96 VGAM 99 (289)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 5543
No 11
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=28.75 E-value=42 Score=33.31 Aligned_cols=71 Identities=14% Similarity=0.298 Sum_probs=48.7
Q ss_pred CceEEEEEeec-----CC--CCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhc-----CcCceeeeeCceecCCCcch
Q 019385 198 EPLQITYSYWD-----GA--GHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTT-----SVENLLYVKEDLIIPHQHSF 265 (342)
Q Consensus 198 eeI~ItfsYwD-----Gs--ghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~v-----svd~LMyVKeDlIIPHhytF 265 (342)
+.|.|+|.-|. |+ ..+.+|.|++|+++-..|+++.+.- +.|+-=... =+.-+.=++++ |...+|
T Consensus 292 ~~I~VtytV~~~~~~~~~~~~~~~~Vtv~~gssll~vLk~a~e~n-~~F~F~~~e~~~G~fItSInG~~~~---~~~~~Y 367 (399)
T 2pmv_A 292 SNITVIYTINNQLRGVELLFNETINVSVKSGSVLLVVLEEAQRKN-PMFKFETTMTSWGLVVSSINNIAEN---VNHKTY 367 (399)
T ss_dssp CSEEEEEEEECCCSSCCCCEECCEEEESSSCSCHHHHHHHHHHSC-CSCCEEEEEETTEEEEEEESSCBCC---GGGTEE
T ss_pred ceEEEEEEEecccccccCCCCcceEEEecCCCCHHHHHHHHHHhC-cCCceEEeecCCCceEEeECCCccC---cCCCee
Confidence 67999999996 44 3467999999999999999998852 123211111 12223334666 888888
Q ss_pred hhhhhhc
Q 019385 266 YELIVNK 272 (342)
Q Consensus 266 YdfIvnK 272 (342)
.-|.++.
T Consensus 368 W~l~~~g 374 (399)
T 2pmv_A 368 WQFLSGV 374 (399)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 8888883
No 12
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.10 E-value=58 Score=25.92 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=17.7
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhcc
Q 019385 15 AVRIRRLEKQ--REAERRKIQELKTKS 39 (342)
Q Consensus 15 ~~r~~~l~kq--Re~~~~~~e~~k~~~ 39 (342)
+.|-.+.+-+ |.+++++|..+|+++
T Consensus 23 gKrEaA~Ee~YfrqkekEqL~~LKkkl 49 (84)
T 1gmj_A 23 GKREQAEEERYFRARAKEQLAALKKHK 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666 777778888877777
No 13
>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13
Probab=22.97 E-value=33 Score=32.73 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCC---CC---cceEEeecCCcH
Q 019385 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGA---GH---RRVIQVRKGDTI 224 (342)
Q Consensus 174 Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGs---gh---rr~v~vkKGdtI 224 (342)
-++||++||.. .....-+|.++||-+|-- |. ...+++.+|.++
T Consensus 22 t~~lr~~fli~--------~lf~~~~~~~~y~h~dr~i~gg~~p~~~~l~L~~~~~~ 70 (289)
T 1ywk_A 22 TEQLRDEFLVE--------KVFIPGAISLTYTHNDRMIFGGVTPTTEELEIILDKEL 70 (289)
T ss_dssp HHHHHHHHEES--------CSCCTTSEEEEEETTTTEEEEEECCSSSCEECCCSGGG
T ss_pred HHHHHHhhhhh--------hccCCCEEEEEEEecccEEEeeeeECCceEEcCCCcee
Confidence 48999999986 777889999999999854 21 356777777444
No 14
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=22.71 E-value=70 Score=25.58 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=24.6
Q ss_pred EeecCCCCcceEEeecCCcHHHHHHHHHHHh
Q 019385 205 SYWDGAGHRRVIQVRKGDTIGEFLRAVQQQL 235 (342)
Q Consensus 205 sYwDGsghrr~v~vkKGdtI~~FL~k~r~~l 235 (342)
++-...|+|.+|+|..|.++.+-|+.|-+..
T Consensus 13 ~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~ 43 (90)
T 2al3_A 13 SVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQ 43 (90)
T ss_dssp EEECTTSCEEEECCCTTSBHHHHHHHHHHHT
T ss_pred EEEcCCCcEEEEEECCCCCHHHHHHHHHHHh
Confidence 3445667899999999999999988776633
No 15
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=22.43 E-value=1.8e+02 Score=25.02 Aligned_cols=64 Identities=16% Similarity=0.317 Sum_probs=41.5
Q ss_pred CCCCcchhhhHHHHHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCCCCcceEEeecCCcHHHHHHHHHHHhhHHhH
Q 019385 161 FLPDRGVEDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFR 240 (342)
Q Consensus 161 FLPD~~RE~E~~~Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGsghrr~v~vkKGdtI~~FL~k~r~~l~~ef~ 240 (342)
-+|..-|.+-+.+-|+|.+||- |.++|.- -|||..-.+-+=.||.+..|- ++++....+-|
T Consensus 49 gvpeqvrkelakeaerl~~efn-----------------i~v~y~i-mgsgsgvm~i~f~gddlea~e-kalkemirqar 109 (170)
T 4hhu_A 49 GVPEQVRKELAKEAERLKAEFN-----------------INVQYQI-MGSGSGVMVIVFEGDDLEALE-KALKEMIRQAR 109 (170)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHT-----------------CEEEEEE-ECTTCCEEEEEEECSCHHHHH-HHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhcc-----------------eEEEEEE-EeCCceEEEEEEecCcHHHHH-HHHHHHHHHHH
Confidence 4577777776677777777774 4577765 478877667777899988765 44444433334
Q ss_pred hhh
Q 019385 241 EIR 243 (342)
Q Consensus 241 Elr 243 (342)
.++
T Consensus 110 kfa 112 (170)
T 4hhu_A 110 KFA 112 (170)
T ss_dssp HTT
T ss_pred hhc
Confidence 343
No 16
>2gib_A Nucleocapsid protein; dimer, viral protein; 1.75A {Sars coronavirus} SCOP: d.254.1.2
Probab=20.40 E-value=1.2e+02 Score=24.85 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=27.1
Q ss_pred cccCCceEEEEEeecCCCCcceEEeecCCc-HHHHHHHHHHHh
Q 019385 194 RSKFEPLQITYSYWDGAGHRRVIQVRKGDT-IGEFLRAVQQQL 235 (342)
Q Consensus 194 ~iK~eeI~ItfsYwDGsghrr~v~vkKGdt-I~~FL~k~r~~l 235 (342)
+.-...++|||+| +|+|+|.|. -.+||+.|.+++
T Consensus 57 ke~~d~~~lty~y--------~i~vpk~dP~~~~~~~~l~~~v 91 (103)
T 2gib_A 57 EVTPSGTWLTYHG--------AIKLDDKDPQFKDNVILLNKHI 91 (103)
T ss_dssp EECSSCEEEEEEE--------EEEECTTSTTHHHHHHHHHHHB
T ss_pred eecCCcEEEEEEE--------EEEeCCCCCCHHHHHHHHHHhh
Confidence 3445689999998 599999995 778888887766
Done!