Query 019385
Match_columns 342
No_of_seqs 142 out of 171
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 15:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019385.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019385hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgha_ d.15.1.1 (A:) Ubiquiti 54.5 11 0.00079 29.1 5.7 80 187-268 4-83 (116)
2 d1e0ga_ d.7.1.1 (A:) Membrane- 30.5 11 0.00079 24.8 1.8 43 215-260 4-46 (48)
3 d2zjrd1 d.77.1.1 (D:3-179) Rib 29.0 8.9 0.00065 31.7 1.3 46 215-261 86-138 (177)
4 d2hepa1 a.2.21.1 (A:1-42) Hypo 26.9 18 0.0013 23.8 2.3 16 169-184 25-40 (42)
5 d2bt6a1 d.15.4.1 (A:5-108) Adr 25.0 37 0.0027 24.8 4.3 28 199-228 2-29 (104)
6 d2al3a1 d.15.1.2 (A:10-85) Tet 24.6 23 0.0017 25.8 2.8 28 208-235 7-34 (76)
7 d1ywka1 b.82.1.13 (A:1001-1260 24.5 14 0.001 32.6 1.9 43 174-224 17-65 (260)
8 d1wxma1 d.15.1.5 (A:8-80) A-Ra 18.8 59 0.0043 23.1 4.0 32 211-250 10-41 (73)
9 d1xrua1 b.82.1.13 (A:1-277) 5- 18.0 16 0.0012 32.5 0.9 29 174-210 17-45 (277)
10 d2uyzb1 d.15.1.1 (B:20-96) SUM 17.6 1.4E+02 0.01 20.1 5.9 60 199-268 2-61 (77)
No 1
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.46 E-value=11 Score=29.07 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=62.5
Q ss_pred CCchhhhcccCCceEEEEEeecCCCCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeeeCceecCCCcchh
Q 019385 187 SDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFY 266 (342)
Q Consensus 187 ~~~~~Qe~iK~eeI~ItfsYwDGsghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVKeDlIIPHhytFY 266 (342)
+.||..-.+-.+.|.|.+-.-||. ...+.|...|||.++=++.......++.|-..+.+++.=+|=..-+|..+.|.-
T Consensus 4 ~ssg~s~~~~~~~i~i~v~~l~Gk--~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~ 81 (116)
T d1wgha_ 4 GSSGMSSHVPADMINLRLILVSGK--TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLG 81 (116)
T ss_dssp CCCCCCCCCCSSSEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTT
T ss_pred CcCCccCCCCCCeEEEEEEEcCCC--EEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHH
Confidence 457777888899999999998864 567999999999999877755433333455678899998888888888888776
Q ss_pred hh
Q 019385 267 EL 268 (342)
Q Consensus 267 df 268 (342)
++
T Consensus 82 ~~ 83 (116)
T d1wgha_ 82 AL 83 (116)
T ss_dssp TT
T ss_pred Hc
Confidence 65
No 2
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}
Probab=30.49 E-value=11 Score=24.80 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=24.5
Q ss_pred eEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeeeCceecC
Q 019385 215 VIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIP 260 (342)
Q Consensus 215 ~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVKeDlIIP 260 (342)
+-+|++|||+|..-.+--- -..+..+|-..+ +.+++=.-|+||
T Consensus 4 ~y~V~~GDTl~~IA~~y~v-s~~~i~~~N~l~--~~l~~Gq~L~i~ 46 (48)
T d1e0ga_ 4 TYRVRKGDSLSSIAKRHGV-NIKDVMRWNSDT--ANLQPGDKLTLF 46 (48)
T ss_dssp EEEECTTCCHHHHHHHHTC-CHHHHHHHCSCG--GGCCTTEEEECC
T ss_pred EEEECCCCCHHHHHHHHCC-CHHHHHHHcCCc--ccCcCCCEEEEE
Confidence 4589999999987665321 123344444432 335554555555
No 3
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]}
Probab=28.98 E-value=8.9 Score=31.69 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=32.6
Q ss_pred eEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCc-------eeeeeCceecCC
Q 019385 215 VIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVEN-------LLYVKEDLIIPH 261 (342)
Q Consensus 215 ~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~-------LMyVKeDlIIPH 261 (342)
.|+++ |+.++.||+++....-+..++++++++-. -+-++|=+++|-
T Consensus 86 kvTLR-g~~my~FL~kli~~vlprirdf~G~~~~~fd~~gn~~fGi~e~~~FpE 138 (177)
T d2zjrd1 86 KVTLR-GERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPE 138 (177)
T ss_dssp BCEEC-SHHHHHHHHHHHHTTTTSCTTCCCCCCSCCSTTTCCEECCCCSTTCSS
T ss_pred EEEec-cchHHHHHHHHHHhhcchhcccccccccccCcCceEEechhhhhcccc
Confidence 45544 78999999999997766666666554433 366788788886
No 4
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=26.89 E-value=18 Score=23.80 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHhHhc
Q 019385 169 DDLSVRERQRSNLSVN 184 (342)
Q Consensus 169 ~E~~~Re~LRkE~~~~ 184 (342)
+|..++..||+||+..
T Consensus 25 ~E~~EQ~~LR~eYl~~ 40 (42)
T d2hepa1 25 EEKAEQQKLRQEYLKG 40 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788889999999864
No 5
>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.02 E-value=37 Score=24.83 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=20.7
Q ss_pred ceEEEEEeecCCCCcceEEeecCCcHHHHH
Q 019385 199 PLQITYSYWDGAGHRRVIQVRKGDTIGEFL 228 (342)
Q Consensus 199 eI~ItfsYwDGsghrr~v~vkKGdtI~~FL 228 (342)
.|.|+|.-=| |.+.+|.+..|+|+-+-+
T Consensus 2 ~i~i~~i~~d--G~~~~i~~~~G~tLl~~~ 29 (104)
T d2bt6a1 2 KITVHFINRD--GETLTTKGKIGDSLLDVV 29 (104)
T ss_dssp EEEEEEECTT--SCEEEEEEETTCBHHHHH
T ss_pred eEEEEEECCC--CCEEEEEeCCCchHHHHH
Confidence 5778887545 557789999999994443
No 6
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.64 E-value=23 Score=25.79 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=24.0
Q ss_pred cCCCCcceEEeecCCcHHHHHHHHHHHh
Q 019385 208 DGAGHRRVIQVRKGDTIGEFLRAVQQQL 235 (342)
Q Consensus 208 DGsghrr~v~vkKGdtI~~FL~k~r~~l 235 (342)
+.+|+|-+|+|..|.++-+-|+.|-+.+
T Consensus 7 ~~~~rR~~VKvtP~t~l~~VL~eaC~k~ 34 (76)
T d2al3a1 7 APNGRRHTVKVTPSTVLLQVLEDTCRRQ 34 (76)
T ss_dssp CTTSCEEEECCCTTSBHHHHHHHHHHHT
T ss_pred CCCCcEEEEEeCCCcCHHHHHHHHHHHh
Confidence 5678999999999999999999876633
No 7
>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}
Probab=24.54 E-value=14 Score=32.63 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=31.9
Q ss_pred HHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCC---CC---cceEEeecCCcH
Q 019385 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGA---GH---RRVIQVRKGDTI 224 (342)
Q Consensus 174 Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGs---gh---rr~v~vkKGdtI 224 (342)
-++||++|+.. .-...-+|..+||.+|-- |. ...+.+..++.+
T Consensus 17 t~~lr~~fli~--------~lf~~~~i~~~ysh~dr~i~gg~~p~~~~l~l~~~~~~ 65 (260)
T d1ywka1 17 TEQLRDEFLVE--------KVFIPGAISLTYTHNDRMIFGGVTPTTEELEIILDKEL 65 (260)
T ss_dssp HHHHHHHHEES--------CSCCTTSEEEEEETTTTEEEEEECCSSSCEECCCSGGG
T ss_pred HHHHHHhhchh--------hccCCCEEEEEEEecceeEEeeEEecCCceeccCchhc
Confidence 48999999986 788889999999999964 11 245666555543
No 8
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.80 E-value=59 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=26.2
Q ss_pred CCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCce
Q 019385 211 GHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENL 250 (342)
Q Consensus 211 ghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~L 250 (342)
|.+-.|.|+.|.||.+-|.++.+ .|+++.+.+
T Consensus 10 gq~T~V~vrpG~tir~~L~k~l~--------kRgl~~~~~ 41 (73)
T d1wxma1 10 KQRTVVTVRDGMSVYDSLDKALK--------VRGLNQDCC 41 (73)
T ss_dssp SCEEEEECCSSCBSHHHHHHHHH--------TTTCCSSSE
T ss_pred CCeEEEEecCCCCHHHHHHHHHH--------HcCCCHHHE
Confidence 55667999999999999999976 666776664
No 9
>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}
Probab=18.02 E-value=16 Score=32.46 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.6
Q ss_pred HHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCC
Q 019385 174 RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGA 210 (342)
Q Consensus 174 Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGs 210 (342)
-++||++|+.. .-...-+|..+||.+|--
T Consensus 17 t~~lr~~fli~--------~lf~~~~i~~~ysh~dr~ 45 (277)
T d1xrua1 17 TQGLRNEFLVE--------KVFVADEYTMVYSHIDRI 45 (277)
T ss_dssp HHHHHHHHEEC--------CCCCBTCBCCEEETTTTE
T ss_pred HHHHHHhhchh--------hcccCCEEEEEEEeccee
Confidence 48999999986 788889999999999964
No 10
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.63 E-value=1.4e+02 Score=20.10 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=41.9
Q ss_pred ceEEEEEeecCCCCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeeeCceecCCCcchhhh
Q 019385 199 PLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYEL 268 (342)
Q Consensus 199 eI~ItfsYwDGsghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVKeDlIIPHhytFYdf 268 (342)
.|.|.-.-=|| ..-.++|++-+++...++.+.+ -.++++.++-|+=.+-.|.-+.|--++
T Consensus 2 ~I~ikv~~~dg--~~v~f~v~~~t~l~kl~~~y~~--------~~~~~~~~~~f~fdG~~l~~~~T~~~l 61 (77)
T d2uyzb1 2 YIKLKVIGQDS--SEIHFKVKMTTHLKKLKESYCQ--------RQGVPMNSLRFLFEGQRIADNHTPKEL 61 (77)
T ss_dssp EEEEEEECTTC--CEEEEEEETTSCTHHHHHHHHH--------HHTCCGGGEEEEETTEECCTTCCHHHH
T ss_pred EEEEEEECCCC--CEEEEEECCCChHHHHHHHHHH--------HhCCChhHEEEEECCEECCCCCCHHHc
Confidence 35555554454 4446999999999998887654 445778888887777777766776554
Done!