Query 019386
Match_columns 342
No_of_seqs 297 out of 1709
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul1_X Flap endonuclease-1; pr 100.0 1.5E-74 5.2E-79 566.6 19.1 296 2-298 52-347 (379)
2 3q8k_A Flap endonuclease 1; he 100.0 4.1E-72 1.4E-76 541.6 30.7 290 2-295 52-341 (341)
3 3ory_A Flap endonuclease 1; hy 100.0 3.8E-72 1.3E-76 545.5 23.8 288 2-296 61-361 (363)
4 2izo_A FEN1, flap structure-sp 100.0 6.5E-68 2.2E-72 514.0 20.8 289 2-294 44-346 (346)
5 1b43_A Protein (FEN-1); nuclea 100.0 4.4E-66 1.5E-70 500.2 21.8 283 2-295 47-339 (340)
6 1rxw_A Flap structure-specific 100.0 1.8E-64 6.2E-69 488.1 26.6 280 2-294 47-336 (336)
7 1a76_A Flap endonuclease-1 pro 100.0 1.6E-65 5.5E-70 493.6 17.3 277 2-295 47-326 (326)
8 3qe9_Y Exonuclease 1; exonucle 100.0 7.7E-53 2.6E-57 408.3 17.6 233 5-241 47-291 (352)
9 1exn_A 5'-exonuclease, 5'-nucl 100.0 2.2E-43 7.6E-48 332.5 8.8 208 4-243 36-265 (290)
10 1bgx_T TAQ DNA polymerase; DNA 100.0 2E-45 6.7E-50 390.1 -10.6 233 2-267 33-279 (832)
11 3h7i_A Ribonuclease H, RNAse H 99.9 1.5E-27 5E-32 223.8 8.4 163 2-193 32-211 (305)
12 2y35_A LD22664P; hydrolase-DNA 97.9 0.00011 3.8E-09 80.0 14.3 161 32-192 83-298 (1140)
13 3pie_A 5'->3' exoribonuclease 97.8 0.00016 5.4E-09 78.3 12.5 178 15-193 63-302 (1155)
14 3fqd_A Protein DHP1, 5'-3' exo 97.5 0.00054 1.8E-08 72.2 11.7 95 98-192 195-349 (899)
15 2a1j_A DNA repair endonuclease 96.6 0.0009 3.1E-08 48.2 2.5 26 185-210 7-32 (63)
16 1z00_B DNA repair endonuclease 96.2 0.0028 9.5E-08 48.3 3.2 26 185-210 21-46 (84)
17 1z00_A DNA excision repair pro 94.9 0.02 6.8E-07 43.6 3.6 26 185-210 22-47 (89)
18 1x2i_A HEF helicase/nuclease; 94.9 0.02 6.9E-07 41.7 3.6 25 186-210 18-42 (75)
19 1kft_A UVRC, excinuclease ABC 94.8 0.011 3.7E-07 44.0 1.9 27 185-211 27-53 (78)
20 2a1j_B DNA excision repair pro 94.4 0.029 9.8E-07 42.9 3.5 25 186-210 36-60 (91)
21 2nrt_A Uvrabc system protein C 94.0 0.03 1E-06 50.1 3.2 26 185-210 171-196 (220)
22 3c65_A Uvrabc system protein C 90.9 0.043 1.5E-06 49.3 0.0 27 184-210 175-201 (226)
23 2bgw_A XPF endonuclease; hydro 88.7 0.19 6.6E-06 44.4 2.5 25 186-210 166-190 (219)
24 1ixr_A Holliday junction DNA h 87.7 0.25 8.5E-06 43.2 2.4 88 186-278 76-170 (191)
25 4gfj_A Topoisomerase V; helix- 85.0 0.54 1.9E-05 45.8 3.4 25 186-210 472-496 (685)
26 1cuk_A RUVA protein; DNA repai 84.8 0.42 1.4E-05 42.1 2.4 18 187-204 78-95 (203)
27 2ztd_A Holliday junction ATP-d 80.6 0.76 2.6E-05 40.7 2.4 42 162-209 73-114 (212)
28 1s5l_U Photosystem II 12 kDa e 76.9 0.59 2E-05 38.4 0.4 24 186-209 67-92 (134)
29 1vq8_Y 50S ribosomal protein L 73.6 0.68 2.3E-05 41.9 0.0 25 185-209 18-43 (241)
30 2ziu_A MUS81 protein; helix-ha 71.1 3 0.0001 38.7 3.8 29 186-214 241-269 (311)
31 2w9m_A Polymerase X; SAXS, DNA 68.5 6.2 0.00021 39.9 5.8 27 186-212 101-128 (578)
32 2owo_A DNA ligase; protein-DNA 68.3 2.7 9.3E-05 43.4 3.1 26 185-210 515-540 (671)
33 3sgi_A DNA ligase; HET: DNA AM 68.0 1.1 3.7E-05 45.9 0.0 27 185-211 532-558 (615)
34 2duy_A Competence protein come 66.6 2.7 9.2E-05 30.3 2.0 17 186-202 31-47 (75)
35 3maj_A DNA processing chain A; 65.1 8.8 0.0003 36.9 5.8 41 167-213 17-57 (382)
36 2bcq_A DNA polymerase lambda; 63.2 4.4 0.00015 38.2 3.3 26 186-211 100-126 (335)
37 3c1y_A DNA integrity scanning 62.0 3.7 0.00013 39.4 2.5 25 187-211 320-344 (377)
38 2i5h_A Hypothetical protein AF 61.7 6 0.0002 34.6 3.5 46 167-212 112-167 (205)
39 3arc_U Photosystem II 12 kDa e 61.4 2 6.9E-05 33.2 0.4 23 186-208 30-54 (97)
40 3b0x_A DNA polymerase beta fam 61.2 5.2 0.00018 40.4 3.6 28 186-213 97-126 (575)
41 1jms_A Terminal deoxynucleotid 60.6 4.9 0.00017 38.6 3.1 25 186-210 125-150 (381)
42 2fmp_A DNA polymerase beta; nu 60.3 4.2 0.00015 38.3 2.6 25 186-210 102-127 (335)
43 1dgs_A DNA ligase; AMP complex 60.2 4.2 0.00014 42.0 2.6 25 185-209 510-534 (667)
44 2ihm_A POL MU, DNA polymerase 58.0 5.5 0.00019 37.9 2.9 24 186-209 106-130 (360)
45 4glx_A DNA ligase; inhibitor, 56.1 7.3 0.00025 39.6 3.6 14 89-102 241-254 (586)
46 2ztd_A Holliday junction ATP-d 46.6 9.6 0.00033 33.5 2.4 34 168-203 109-144 (212)
47 3vdp_A Recombination protein R 45.7 8.5 0.00029 33.9 1.9 15 186-200 30-44 (212)
48 2g3q_A Protein YBL047C; endocy 44.8 15 0.00053 23.3 2.6 26 250-277 2-27 (43)
49 2zvk_U DNA polymerase ETA, pro 43.9 3.7 0.00013 23.5 -0.5 14 284-298 7-20 (26)
50 2edu_A Kinesin-like protein KI 41.6 13 0.00044 28.2 2.1 17 186-202 44-60 (98)
51 3iz6_M 40S ribosomal protein S 40.3 8.8 0.0003 32.1 1.0 17 187-203 33-49 (152)
52 1vdd_A Recombination protein R 40.1 12 0.0004 33.3 1.9 16 186-201 16-31 (228)
53 1rvv_A Riboflavin synthase; tr 38.6 37 0.0013 28.3 4.6 44 82-125 26-76 (154)
54 1ixr_A Holliday junction DNA h 38.4 16 0.00053 31.6 2.4 19 185-203 110-128 (191)
55 4glx_A DNA ligase; inhibitor, 38.3 20 0.00068 36.4 3.5 26 185-210 515-540 (586)
56 1hqk_A 6,7-dimethyl-8-ribityll 36.9 38 0.0013 28.2 4.5 44 82-125 26-76 (154)
57 3umv_A Deoxyribodipyrimidine p 36.6 45 0.0016 33.0 5.8 31 87-118 97-127 (506)
58 2zix_A Crossover junction endo 35.8 3.8 0.00013 37.9 -2.1 29 186-214 237-265 (307)
59 3nq4_A 6,7-dimethyl-8-ribityll 35.8 29 0.00099 29.0 3.6 44 82-125 26-77 (156)
60 1kz1_A 6,7-dimethyl-8-ribityll 35.4 42 0.0014 28.1 4.5 44 82-125 31-82 (159)
61 1whz_A Hypothetical protein; a 35.3 65 0.0022 22.4 5.0 66 105-174 4-69 (70)
62 3b0x_A DNA polymerase beta fam 35.2 22 0.00076 35.7 3.3 39 160-201 108-147 (575)
63 1di0_A Lumazine synthase; tran 34.7 24 0.00082 29.5 2.9 44 82-125 24-74 (158)
64 2ekk_A UBA domain from E3 ubiq 33.9 37 0.0013 22.0 3.2 26 250-277 7-32 (47)
65 1c2y_A Protein (lumazine synth 33.6 41 0.0014 28.0 4.2 44 82-125 27-76 (156)
66 2dak_A Ubiquitin carboxyl-term 33.6 49 0.0017 22.9 4.0 26 250-277 7-32 (63)
67 2qip_A Protein of unknown func 32.8 54 0.0018 26.9 4.9 49 87-135 63-125 (165)
68 3u5c_S 40S ribosomal protein S 32.4 45 0.0015 27.5 4.1 17 187-203 35-51 (146)
69 3fhg_A Mjogg, N-glycosylase/DN 32.2 20 0.0007 31.0 2.2 16 186-201 121-136 (207)
70 1cuk_A RUVA protein; DNA repai 32.2 20 0.0007 31.1 2.1 17 186-202 112-128 (203)
71 2obx_A DMRL synthase 1, 6,7-di 32.0 26 0.00088 29.3 2.7 44 82-125 25-75 (157)
72 4fp9_B Mterf domain-containing 31.2 2E+02 0.0068 26.7 9.0 100 162-277 53-172 (335)
73 3tvs_A Cryptochrome-1; circadi 30.3 56 0.0019 32.6 5.3 32 87-118 63-97 (538)
74 1z96_A DNA-damage, UBA-domain 29.9 71 0.0024 19.4 4.0 26 251-277 2-27 (40)
75 2dag_A Ubiquitin carboxyl-term 29.0 56 0.0019 23.5 3.7 27 250-278 7-33 (74)
76 1pu6_A 3-methyladenine DNA gly 29.0 23 0.0008 30.9 2.0 16 186-201 125-140 (218)
77 1ejb_A Lumazine synthase; anal 28.9 75 0.0026 26.7 5.1 44 82-125 30-85 (168)
78 3fhf_A Mjogg, N-glycosylase/DN 28.8 27 0.00093 30.6 2.4 16 186-201 129-144 (214)
79 3n0u_A Probable N-glycosylase/ 28.0 24 0.00082 31.0 1.9 18 186-203 134-151 (219)
80 3r8n_M 30S ribosomal protein S 27.9 43 0.0015 26.4 3.2 17 187-203 21-37 (114)
81 2ziu_B Crossover junction endo 27.6 47 0.0016 31.1 4.0 29 186-214 259-287 (341)
82 1wji_A Tudor domain containing 27.5 69 0.0023 22.3 3.9 26 250-277 7-32 (63)
83 3mk7_B Cytochrome C oxidase, C 27.4 36 0.0012 29.7 2.8 33 88-120 154-197 (203)
84 1kea_A Possible G-T mismatches 26.7 27 0.00093 30.5 2.0 16 186-201 119-134 (221)
85 1kg2_A A/G-specific adenine gl 26.0 28 0.00097 30.4 2.0 15 186-200 113-127 (225)
86 1ify_A HHR23A, UV excision rep 25.9 40 0.0014 22.2 2.3 25 251-277 7-31 (49)
87 2h56_A DNA-3-methyladenine gly 25.8 29 0.00098 30.6 2.0 15 186-200 142-156 (233)
88 1wiv_A UBP14, ubiquitin-specif 25.5 76 0.0026 22.7 3.9 27 249-277 26-52 (73)
89 1veg_A NEDD8 ultimate buster-1 25.3 73 0.0025 23.6 3.8 27 249-277 26-52 (83)
90 2k6x_A Sigma-A, RNA polymerase 25.2 1E+02 0.0034 21.8 4.5 36 69-104 26-62 (72)
91 2crn_A Ubash3A protein; compac 25.2 35 0.0012 23.9 2.0 28 249-278 6-33 (64)
92 1orn_A Endonuclease III; DNA r 23.4 34 0.0012 30.0 2.0 15 186-200 117-131 (226)
93 2abk_A Endonuclease III; DNA-r 23.2 33 0.0011 29.6 1.9 14 187-200 114-127 (211)
94 2csb_A Topoisomerase V, TOP61; 22.7 54 0.0019 30.0 3.2 104 157-267 352-492 (519)
95 3s6i_A DNA-3-methyladenine gly 22.1 38 0.0013 29.8 2.0 15 186-200 143-157 (228)
96 3m66_A Mterf3, mterf domain-co 22.0 1E+02 0.0035 27.2 5.0 108 160-278 46-172 (270)
97 1w8i_A Putative VAPC ribonucle 22.0 1.2E+02 0.0041 24.1 5.0 50 81-135 77-130 (156)
98 3i0w_A 8-oxoguanine-DNA-glycos 21.4 39 0.0013 30.9 2.0 15 186-200 215-229 (290)
99 2yg9_A DNA-3-methyladenine gly 21.2 40 0.0014 29.5 2.0 15 186-200 150-164 (225)
100 1u3d_A Cryptochrome 1 apoprote 21.1 2.1E+02 0.0072 27.9 7.5 37 85-121 88-132 (509)
101 1whc_A RSGI RUH-027, UBA/UBX 3 21.1 53 0.0018 22.9 2.3 26 250-277 7-32 (64)
102 1vek_A UBP14, ubiquitin-specif 20.8 1E+02 0.0035 22.7 3.9 26 250-277 27-52 (84)
103 4b21_A Probable DNA-3-methylad 20.6 42 0.0014 29.6 2.0 15 186-200 154-168 (232)
104 2dai_A Ubadc1, ubiquitin assoc 20.5 1E+02 0.0035 22.7 3.8 26 250-277 27-52 (83)
105 2i0f_A 6,7-dimethyl-8-ribityll 20.4 81 0.0028 26.2 3.6 44 82-125 26-78 (157)
No 1
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=1.5e-74 Score=566.57 Aligned_cols=296 Identities=54% Similarity=0.980 Sum_probs=247.5
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhhhccc
Q 019386 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (342)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (342)
|+|++|++|+|++|||+++++|+++||+|+|||||.+|++|++++++||++|.++++.++.++++|+.+++.+|+++++.
T Consensus 52 l~~~~G~~t~~l~g~~~~~~~ll~~~i~P~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 131 (379)
T 1ul1_X 52 LQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVK 131 (379)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTCCEEEEECCSCCSCCCCCCCCC-----------------------------CCC
T ss_pred cCcCCCCCchHHHHHHHHHHHHHHCCCCeEEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHhHHHHHHHHHHHcCCCeecCcCcHHHHHHHHHHcCCeEEEecCCCCcccccCCeeEEEeecCCCCCCccEEEeHHHH
Q 019386 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~Ap~EAdaq~A~L~~~g~v~~V~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v 161 (342)
||..|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+||||++.|++++...+.++.++..|+.+.+
T Consensus 132 vt~~~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v 211 (379)
T 1ul1_X 132 VTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRI 211 (379)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887554333456889999999
Q ss_pred HHHhCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHHhCCCCcCCcc
Q 019386 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241 (342)
Q Consensus 162 ~~~lgl~~~q~id~~~L~G~Dy~~~IpGiG~ktA~~Li~~~~sle~il~~l~~~k~~i~~~~~~~~~~~~f~~p~v~~~~ 241 (342)
++.+|++++||+|+|+|+||||+|||||||||||++||++||++|+|+++++..+..+|++|++.+++.+|++|+|+++.
T Consensus 212 ~~~~gl~~~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~~~k~~~~~~~~~~~ar~l~l~~~v~~~~ 291 (379)
T 1ul1_X 212 LQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPE 291 (379)
T ss_dssp HHHHTCCHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCCTTSCCCSSCCHHHHHHHHHSCCCCCGG
T ss_pred HHHhCCCHHHHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhhcccCCCcCCHHHHHHHhcCCeeCCCC
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999877
Q ss_pred ccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhccCCCCccccccCccc
Q 019386 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298 (342)
Q Consensus 242 ~~~~~~~~~pd~e~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~Q~~l~~ff~~~~ 298 (342)
++ ++.|..||.++|++||+++++|+++||++++++|.++....+|+|||+||++++
T Consensus 292 ~~-~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~rl~~~~~~~~q~~l~~ff~~~~ 347 (379)
T 1ul1_X 292 SV-ELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTG 347 (379)
T ss_dssp GC-CCCCCCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHSCCSBCCHHHHSEEEE
T ss_pred Cc-cCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcHHhhcCCCC
Confidence 77 899999999999999889999999999999999999888889999999999865
No 2
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=4.1e-72 Score=541.60 Aligned_cols=290 Identities=53% Similarity=0.977 Sum_probs=276.4
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhhhccc
Q 019386 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (342)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (342)
|+|++|++|+||+|||+|+++|+++||+|+|||||.+|++|++++++||++|.++.+.+.++++.|+.+++.+|++|++.
T Consensus 52 l~~~~G~~T~al~g~~~~~~~ll~~~i~P~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~ 131 (341)
T 3q8k_A 52 LQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVK 131 (341)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHTTTCEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCC
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHCCCCceEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhccc
Confidence 78999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred cCHhHHHHHHHHHHHcCCCeecCcCcHHHHHHHHHHcCCeEEEecCCCCcccccCCeeEEEeecCCCCCCccEEEeHHHH
Q 019386 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~Ap~EAdaq~A~L~~~g~v~~V~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v 161 (342)
||++|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+|||+++.|+++++.++.++.++..|+.+.+
T Consensus 132 vt~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v 211 (341)
T 3q8k_A 132 VTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRI 211 (341)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887654334456789999999
Q ss_pred HHHhCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHHhCCCCcCCcc
Q 019386 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241 (342)
Q Consensus 162 ~~~lgl~~~q~id~~~L~G~Dy~~~IpGiG~ktA~~Li~~~~sle~il~~l~~~k~~i~~~~~~~~~~~~f~~p~v~~~~ 241 (342)
++.+|++|+||+|+|+|+||||+|||||||||||++||++|||+|+|++++++.++++|++|++.+++.+|++|+|+++.
T Consensus 212 ~~~~gl~~~q~id~~~L~G~D~~~gipGiG~KtA~kll~~~gsle~i~~~~~~~k~~~~~~~~~~~~r~l~l~~~V~~~~ 291 (341)
T 3q8k_A 212 LQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPE 291 (341)
T ss_dssp HHHHTCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCSHHHHHHHSCTTTSCCCTTCCHHHHHHHHHSCCCCCTT
T ss_pred HHHhCCCHHHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhcCCCCCcccchHHHHHHhCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhccCCCCccccccC
Q 019386 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295 (342)
Q Consensus 242 ~~~~~~~~~pd~e~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~Q~~l~~ff~ 295 (342)
+ .+|.|..||.++|++||+++++|+++||+++++||.++.. |++||+||.
T Consensus 292 ~-~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~---~~~l~~~~~ 341 (341)
T 3q8k_A 292 S-VELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQ---GSTLEVLFQ 341 (341)
T ss_dssp T-SCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH---HHCCCCCCC
T ss_pred c-cccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---cCcHhhhcC
Confidence 6 4899999999999999999999999999999999998874 999999994
No 3
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=3.8e-72 Score=545.52 Aligned_cols=288 Identities=39% Similarity=0.674 Sum_probs=257.2
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhhhccc
Q 019386 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (342)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (342)
|+|++|++|+||+|||+|+++|+++||+|+|||||.+|++|++++++||++|+++++.+..++++|+.+++.+++++++.
T Consensus 61 l~~~~G~~T~al~gf~~r~~~ll~~~i~Pv~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~ 140 (363)
T 3ory_A 61 LMDNNGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAK 140 (363)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCC
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHcCCCcEEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhcccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHhHHHHHHHHHHHcCCCeecCcCcHHHHHHHHHHcCCeEEEecCCCCcccccCCeeEEEeecCCCCCC---------c
Q 019386 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------P 152 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~Ap~EAdaq~A~L~~~g~v~~V~S~DsD~l~fg~~~v~~~l~~~~~~~~---------~ 152 (342)
||++|++.++++|++|||||++||||||||||+|++.|++++|+|+|+|+||||+++|+++++..+.++. .
T Consensus 141 vt~~~~~~i~~lL~~~GIp~i~apgEADaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~ 220 (363)
T 3ory_A 141 LTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVK 220 (363)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCccHHHHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988764321100 2
Q ss_pred cEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 019386 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (342)
Q Consensus 153 ~~~~~~~~v~~~lgl~~~q~id~~~L~G~Dy~~-~IpGiG~ktA~~Li~~~~sle~il~~l~~~k~~i~~~~~~~~~~~~ 231 (342)
...|+.+.+++.+|++|+||+|+|+|+||||++ ||||||||||++||++|||+|+|+++++. ..+| |++.+++++
T Consensus 221 ~~~~~~~~v~~~~gl~~~q~id~~~L~GsDy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~--~~~~--~~~~~~~~~ 296 (363)
T 3ory_A 221 PELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILK--SPIE--VDVIAIKKY 296 (363)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCC--CSSC--CCHHHHHHH
T ss_pred eEEEcHHHHHHHhCcCHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhccc--ccCC--CCHHHHHHH
Confidence 468999999999999999999999999999999 99999999999999999999999999874 2343 788999999
Q ss_pred hCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhc---cCCCCccccccCc
Q 019386 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN---KSSQGRLESFFKP 296 (342)
Q Consensus 232 f~~p~v~~~~~~~~~~~~~pd~e~l~~fl~~~~~f~~~rv~~~~~~l~~~~~---~~~Q~~l~~ff~~ 296 (342)
|++|.|+. +. +|+|+.||.++|++|||++++|+++||+++++||.++.. +++|+|||+||+.
T Consensus 297 f~~p~v~~--~~-~~~w~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~~~~q~~l~~~f~~ 361 (363)
T 3ory_A 297 FLQPQVTD--NY-RIEWHTPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKENIRGEQKGLSKWFSK 361 (363)
T ss_dssp HHSCCCCS--CC-CCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHTC------------
T ss_pred hcCCCCCC--CC-CCCCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcccccCcCCCHHHhcCC
Confidence 99999995 45 699999999999999999999999999999999988765 4899999999974
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.5e-68 Score=514.01 Aligned_cols=289 Identities=39% Similarity=0.664 Sum_probs=208.2
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhhhccc
Q 019386 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (342)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (342)
|+|++|.+|+|++||++++++|+++||+|+|||||.+|++|++++++||++|.++++.+..+++.|+.+++.+|+++++.
T Consensus 44 l~~~~G~~t~al~g~~~~~~~ll~~~i~Pv~vFDG~~~~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 123 (346)
T 2izo_A 44 LMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILR 123 (346)
T ss_dssp CBCSSSCBCHHHHHHHHHHHHHHHHTEEEEEEECC---------------------------------------------
T ss_pred ccccCCCccHHHHHHHHHHHHHHHCCCcEEEEECCCCcchhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHhHHHHHHHHHHHcCCCeecCcCcHHHHHHHHHHcCCeEEEecCCCCcccccCCeeEEEeecCCCCCC---------c
Q 019386 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------P 152 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~Ap~EAdaq~A~L~~~g~v~~V~S~DsD~l~fg~~~v~~~l~~~~~~~~---------~ 152 (342)
+|+.|++.++++|++|||||++||||||||||+|++.|++++|+|+|+|+||||+++|++++...+.++. .
T Consensus 124 vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~ 203 (346)
T 2izo_A 124 LSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIK 203 (346)
T ss_dssp -CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESSCC-----------CCCCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEEECCCCCcceecCCeEEEEecccccccCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988764432211 3
Q ss_pred cEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 019386 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (342)
Q Consensus 153 ~~~~~~~~v~~~lgl~~~q~id~~~L~G~Dy~~-~IpGiG~ktA~~Li~~~~sle~il~~l~~~k~~i~~~~~~~~~~~~ 231 (342)
+..|+.+.+++.+|++|+||+|+|+|+||||++ ||||||||||++||++|||+++|+++++..+ +|++|++.+++.+
T Consensus 204 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~~~~k--~~~~~~~~~l~~i 281 (346)
T 2izo_A 204 PELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISK--KDINFNIDEIRGL 281 (346)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC-------------------CTTHHHH
T ss_pred eEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhcc--CCCCccHHHHHHH
Confidence 567999999999999999999999999999999 9999999999999999999999999998774 8999988899999
Q ss_pred hCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcc----CCCCcccccc
Q 019386 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 294 (342)
Q Consensus 232 f~~p~v~~~~~~~~~~~~~pd~e~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~----~~Q~~l~~ff 294 (342)
|.+|.|..+ ..++.|..||.++|++||+++++|+++||.++++||.++..+ ++|+|||+||
T Consensus 282 ~~~~~v~~~--~~~l~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~~~~~~~~q~~l~~ff 346 (346)
T 2izo_A 282 FLNPQVVKP--EEALDLNEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 346 (346)
T ss_dssp HHSCCCCCC--C-CCCCCCCCHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTBCCGGGCC
T ss_pred hhCCCCCCc--cccCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcccCCCCCcchhhcC
Confidence 999999865 337999999999999999999999999999999999887653 6899999999
No 5
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=4.4e-66 Score=500.18 Aligned_cols=283 Identities=42% Similarity=0.746 Sum_probs=263.5
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhhhccc
Q 019386 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (342)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (342)
|+|++|.+|+|++|||+++++|++++|+|+|||||.+|++|++++++|+.+|+++.+.+.++++.|+.+.+.+++++++.
T Consensus 47 l~~~~G~~t~~l~g~~~~l~~ll~~~i~pv~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~ 126 (340)
T 1b43_A 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATR 126 (340)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGG
T ss_pred cccccCCchHHHHHHHHHHHHHHhCCCEEEEEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred cCHhHHHHHHHHHHHcCCCeecCcCcHHHHHHHHHHcCCeEEEecCCCCcccccCCeeEEEeecCCCCCC---------c
Q 019386 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------P 152 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~Ap~EAdaq~A~L~~~g~v~~V~S~DsD~l~fg~~~v~~~l~~~~~~~~---------~ 152 (342)
+|+.|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+|+||+++|+++++..+.++. .
T Consensus 127 vt~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~ 206 (340)
T 1b43_A 127 VNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIK 206 (340)
T ss_dssp GTHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999987764322111 3
Q ss_pred cEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 019386 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (342)
Q Consensus 153 ~~~~~~~~v~~~lgl~~~q~id~~~L~G~Dy~~-~IpGiG~ktA~~Li~~~~sle~il~~l~~~k~~i~~~~~~~~~~~~ 231 (342)
+..|+.+.+++.+|++++||+|+|+|+||||++ ||||||||||++||++|||+++++++ |++|++.+++.+
T Consensus 207 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~p~gv~GiG~ktA~kli~~~gsle~il~~--------~~~~~~~~~~~~ 278 (340)
T 1b43_A 207 PELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQK--------QSDVDLYAIKEF 278 (340)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGGGTGG--------GCSSCHHHHHHH
T ss_pred eeEEEHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCCCccHHHHHHHHHHcCCHHHHHcC--------CCCccHHHHHHH
Confidence 467999999999999999999999999999999 99999999999999999999999987 466778899999
Q ss_pred hCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhccCCCCccccccC
Q 019386 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295 (342)
Q Consensus 232 f~~p~v~~~~~~~~~~~~~pd~e~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~Q~~l~~ff~ 295 (342)
|++|.|++ ..++.|..||.++|++||+++++|+++||+++++|+.++..+.+|+|||+||+
T Consensus 279 ~~~~~v~d---~~~~~~~~pd~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~~~~q~~l~~~f~ 339 (340)
T 1b43_A 279 FLNPPVTD---NYNLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFK 339 (340)
T ss_dssp HHSCCCCC---CCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHTTGGGCCSSCC
T ss_pred HhCCCCCC---cccCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCCHHHhhC
Confidence 99998885 33789999999999999999999999999999999998887889999999996
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=1.8e-64 Score=488.11 Aligned_cols=280 Identities=39% Similarity=0.666 Sum_probs=246.2
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhhhccc
Q 019386 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (342)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (342)
|+|++|.+|+|++||++++++|++++|+|+|||||.+|++|++++++||++|.++++.+..+++.|+ +++.++++++..
T Consensus 47 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~-~~l~~~~~~~~~ 125 (336)
T 1rxw_A 47 LKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGD-KDAKKYAQAAGR 125 (336)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHHTCEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTC-TTHHHHHHHHCC
T ss_pred ccccCCCccHHHHHHHHHHHHHHHCCCEEEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHhhcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred cCHhHHHHHHHHHHHcCCCeecCcCcHHHHHHHHHHcCCeEEEecCCCCcccccCCeeEEEeecCCCCC---------Cc
Q 019386 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK---------IP 152 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~Ap~EAdaq~A~L~~~g~v~~V~S~DsD~l~fg~~~v~~~l~~~~~~~---------~~ 152 (342)
||++|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|++||++++|++++...+.++ ..
T Consensus 126 vt~~~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~ 205 (336)
T 1rxw_A 126 VDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVK 205 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEcCchHHHHHHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999998876543210 14
Q ss_pred cEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCc-hHHHHHH
Q 019386 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP-YQEARRL 231 (342)
Q Consensus 153 ~~~~~~~~v~~~lgl~~~q~id~~~L~G~Dy~~~IpGiG~ktA~~Li~~~~sle~il~~l~~~k~~i~~~~~-~~~~~~~ 231 (342)
+..|+.+.+++.+|++|+||+|+|+|+||||++||||||||||++||++|||+|+|+++++ ++|+ ..+.+.+
T Consensus 206 ~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~-------~~l~~~~~l~~i 278 (336)
T 1rxw_A 206 PEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALK-------VNIDHVEEIRNF 278 (336)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT-------C----CHHHHHH
T ss_pred eEEeEHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCC-------CCCccHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999986 3343 4588999
Q ss_pred hCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhccCCCCcccccc
Q 019386 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294 (342)
Q Consensus 232 f~~p~v~~~~~~~~~~~~~pd~e~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~Q~~l~~ff 294 (342)
|.+|.|+. ..++.|..||.++|++||+++++|+++||+++++||.++.. +|+|||+||
T Consensus 279 ~~~~~v~~---~~~~~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~--~q~~l~~~f 336 (336)
T 1rxw_A 279 FLNPPVTD---DYRIEFREPDFEKAIEFLCEEHDFSRERVEKALEKLKALKS--TQATLERWF 336 (336)
T ss_dssp HHSCCCCC---CCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHGGGCC--------------
T ss_pred HhCCCCCC---cccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHhhhc--cCcchhhcC
Confidence 99999982 33799999999999999999999999999999999987654 799999998
No 7
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=1.6e-65 Score=493.60 Aligned_cols=277 Identities=40% Similarity=0.714 Sum_probs=249.5
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhhhccc
Q 019386 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (342)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~ 81 (342)
|+|++|.+|+|++||++++++|+.++|+|+|||||.+|++|++++++||++|.++++.+..+++.|+.+++.+|+++++.
T Consensus 47 l~~~~G~~t~~l~g~~~~l~~ll~~~i~Pv~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 126 (326)
T 1a76_A 47 LRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSY 126 (326)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCS
T ss_pred cccccCCccHHHHHHHHHHHHHHHCCCeEEEEEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 78999999999999999999998899999999999999999999999999999999988777788888888999999999
Q ss_pred cCHhHHHHHHHHHHHcCCCeecCcCcHHHHHHHHHHcCCeEEEecCCCCcccccCCeeEEEeecCCCCCCccEEEeHHHH
Q 019386 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~Ap~EAdaq~A~L~~~g~v~~V~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v 161 (342)
+|+.|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+||||+++|++++...+ ..++.|+.+.+
T Consensus 127 vt~~~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~---~~~~~~~~~~v 203 (326)
T 1a76_A 127 LTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTK---EMPELIELNEV 203 (326)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCS---SCCEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEECCccHHHHHHHHHHCCCEEEEecCCcccceecCCEEEEeecCCC---CceEEEEHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998776432 35789999999
Q ss_pred HHHhCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHH-HHHHhhcCCCCCCCchHHHHHHhCCCCcCC
Q 019386 162 LEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETIL-ENINRERYQIPEDWPYQEARRLFKEPEVVT 239 (342)
Q Consensus 162 ~~~lgl~~~q~id~~~L~G~Dy~~-~IpGiG~ktA~~Li~~~~sle~il-~~l~~~k~~i~~~~~~~~~~~~f~~p~v~~ 239 (342)
++.+|++|+||+|+|+|+||||++ ||||||||||++||++ ||+++|+ ++++. +.+++.+|++|.|..
T Consensus 204 ~~~~gl~~~q~id~~~L~GsD~~p~GvpGiG~ktA~kli~~-gsle~i~~~~~~~----------~~~~~~~~l~~~l~~ 272 (326)
T 1a76_A 204 LEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRS-GVAKDVLKKEVEY----------YDEIKRIFKEPKVTD 272 (326)
T ss_dssp HHHHTCCHHHHHHHHHHHCCTTSTTTTTTCCHHHHHHHHHH-TCHHHHHHHHSTT----------HHHHHHHHHSCCCCC
T ss_pred HHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHc-CCHHHHHHHHHhH----------HHHHHHHHhCCCCCC
Confidence 999999999999999999999999 9999999999999999 9999999 99752 357889999999985
Q ss_pred ccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcc-CCCCccccccC
Q 019386 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK-SSQGRLESFFK 295 (342)
Q Consensus 240 ~~~~~~~~~~~pd~e~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~-~~Q~~l~~ff~ 295 (342)
++ ++.|..||.++|++||+++++|+++||+++++||.+..+. .+|+|||+||+
T Consensus 273 --~~-~~~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~~~~~q~~l~~~f~ 326 (326)
T 1a76_A 273 --NY-SLSLKLPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIANKTKQKTLDAWFK 326 (326)
T ss_dssp --CC-CCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHC----------
T ss_pred --Cc-cCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCcCchhhhcC
Confidence 55 8999999999999998799999999999999999887664 78999999995
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=7.7e-53 Score=408.35 Aligned_cols=233 Identities=29% Similarity=0.448 Sum_probs=213.0
Q ss_pred CCCCcchHHHHHHHHHHHHH-HcCCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhhhccccC
Q 019386 5 EAGEVTSHLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 83 (342)
Q Consensus 5 ~~G~~t~~l~g~~~r~~~ll-~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~~vt 83 (342)
+.|++|+|+.|+|+|+++++ ++||+|||||||.+++.|..+..+|+.+|+++.+..++++++|+.+++.+++++++.+|
T Consensus 47 ~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt 126 (352)
T 3qe9_Y 47 AKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINIT 126 (352)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCC
Confidence 58999999999999999975 89999999999999889999988999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCeecCcCcHHHHHHHHHHcCCeEEEecCCCCcccccCCeeEEEeecCCCCCCccEEEeHHHH--
Q 019386 84 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-- 161 (342)
Q Consensus 84 ~~~~~~~~~lL~~~Gi~~i~Ap~EAdaq~A~L~~~g~v~~V~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v-- 161 (342)
++|++.++++|++|||||++||||||||||+|++.|++++|+|+|+|+||||+++|++++...+ ....++.+.+
T Consensus 127 ~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~----~~~~~~~~~~~~ 202 (352)
T 3qe9_Y 127 HAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFG----NGLEIDQARLGM 202 (352)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHHHTTSCSEEECSCGGGGGGTCSEEEESCCTTS----EEEEEEGGGGTT
T ss_pred HHHHHHHHHHHHHcCCcEEECCcchHHHHHHHHHCCCeEEEEeCCcCcccccCCeEEEeccCCC----CcEEEeHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987775432 1245777764
Q ss_pred HHHhC--CCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHc--CCHHHHHHHHHhh---cCCCCCCCc--hHHHHHHh
Q 019386 162 LEELN--LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH--GSIETILENINRE---RYQIPEDWP--YQEARRLF 232 (342)
Q Consensus 162 ~~~lg--l~~~q~id~~~L~G~Dy~~~IpGiG~ktA~~Li~~~--~sle~il~~l~~~---k~~i~~~~~--~~~~~~~f 232 (342)
++++| ++++||+|+|+|+||||++||||||+|||++||++| ++++++++++++. ++++|++|. +..|+.+|
T Consensus 203 ~~~~g~~l~~~q~id~~~L~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~~l~~~~~vp~~~~~~~~~A~~~F 282 (352)
T 3qe9_Y 203 CRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTF 282 (352)
T ss_dssp CCTTCSSCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHHHHTCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHhcCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 68899 999999999999999999999999999999999999 7999999998753 568999998 67999999
Q ss_pred CCCCcCCcc
Q 019386 233 KEPEVVTDE 241 (342)
Q Consensus 233 ~~p~v~~~~ 241 (342)
+|+.|.++.
T Consensus 283 ~~q~V~dp~ 291 (352)
T 3qe9_Y 283 LYQLVFDPI 291 (352)
T ss_dssp HHCEEEETT
T ss_pred CCCEEECCC
Confidence 999998764
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=100.00 E-value=2.2e-43 Score=332.52 Aligned_cols=208 Identities=18% Similarity=0.197 Sum_probs=174.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHcCCCc---EEEEeCCCCchhhHHHHHHHhhhhhch-------HHHHHHHHcCCHHHHH
Q 019386 4 NEAGEVTSHLQGMFTRTIRLLEAGMKP---IYVFDGQPPDLKKQELAKRYSKRADAT-------DDLAEAVEAGNKEDIE 73 (342)
Q Consensus 4 ~~~G~~t~~l~g~~~r~~~ll~~gi~P---v~VFDG~~~~~K~~~~~~rk~~R~~~~-------~~l~~a~~~g~~~~~~ 73 (342)
|++|++ |++||++++.++++. ++| ++||||.++++|++.++.||++|.++| +.+
T Consensus 36 ~~~G~p--av~Gf~~~l~~ll~~-~~p~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~~~~~~e~L------------- 99 (290)
T 1exn_A 36 NNSKKP--FASSYVSTIQSLAKS-YSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKAL------------- 99 (290)
T ss_dssp HCSSSC--CHHHHHHHHHHHHHH-TTEEEEEEECCBSCCHHHHHHCTTTTHHHHHHHHTSCHHHHHH-------------
T ss_pred CCCCch--HHHHHHHHHHHHHHH-cCCCeEEEEEcCCCchhhhhCcHHHHcCCCCCCccccccchhH-------------
Confidence 688998 999999999999986 778 789999999999999999999999998 444
Q ss_pred HHhhhccccCHhH-HHHHHHHHHH--cCCCeecCcC-cHHHHHHHHHHc----CCeEEEecCCCCcccccCCeeEEEeec
Q 019386 74 KFSKRTVKVTKQH-NDDCKRLLKL--MGVPVVEAPS-EAEAQCAALCKS----GQVYAVASEDMDSLTFGAPRFLRHLMD 145 (342)
Q Consensus 74 k~~~r~~~vt~~~-~~~~~~lL~~--~Gi~~i~Ap~-EAdaq~A~L~~~----g~v~~V~S~DsD~l~fg~~~v~~~l~~ 145 (342)
..| ++.++++|++ ||||++.+|| ||||+||+|+++ |..+.|+|+|+|++||++++|.. ..
T Consensus 100 ----------~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v--~~ 167 (290)
T 1exn_A 100 ----------DEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSR--FS 167 (290)
T ss_dssp ----------HHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEE--EE
T ss_pred ----------HHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEE--EE
Confidence 456 8999999999 9999999998 999999999985 77777999999999999998732 22
Q ss_pred CCCCCCccEEEeHHHHHHHhCCCH-HHHHHHHHHhC--CCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhh-cCCCCC
Q 019386 146 PSSRKIPVMEFEVAKILEELNLTM-DQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPE 221 (342)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~lgl~~-~q~id~~~L~G--~Dy~~~IpGiG~ktA~~Li~~~~sle~il~~l~~~-k~~i~~ 221 (342)
+. ....++.+.+.++||++| +||+|+|+|+| ||+.+||||||||||++||++|||+|+|++++++. +.++.+
T Consensus 168 ~~----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~~~~~~~~ 243 (290)
T 1exn_A 168 FT----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQ 243 (290)
T ss_dssp TT----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCSCCCHHHH
T ss_pred CC----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHhccHHHHH
Confidence 22 467899999999999999 99999999999 99999999999999999999999999999999876 433333
Q ss_pred CCchHHHHHHhCCCCcCCcccc
Q 019386 222 DWPYQEARRLFKEPEVVTDEEQ 243 (342)
Q Consensus 222 ~~~~~~~~~~f~~p~v~~~~~~ 243 (342)
++.........+..++++.+++
T Consensus 244 ~L~~~~~~~~ls~~L~~i~~d~ 265 (290)
T 1exn_A 244 NLNASEELLFRNLILVDLPTYC 265 (290)
T ss_dssp HHHTCHHHHHHHHHHHCHHHHH
T ss_pred HHHHhHHHHHHHHHhceeeeCC
Confidence 3332233333344555554444
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=2e-45 Score=390.10 Aligned_cols=233 Identities=27% Similarity=0.378 Sum_probs=202.3
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHHc-CCCcEEEEeCCCCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHHHhhhcc
Q 019386 2 LTNEAGEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTV 80 (342)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~-gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k~~~r~~ 80 (342)
|+|++|.+|+|++||+++++++++. ++.|+|||||.++++|+++++.||++|.++|+++
T Consensus 33 l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~YKa~R~~~pe~l-------------------- 92 (832)
T 1bgx_T 33 LTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGYKAGRAPTPEDF-------------------- 92 (832)
T ss_dssp CBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGTTTSCCCCCCTTS--------------------
T ss_pred cccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHHHHhccccChHHH--------------------
Confidence 7899999999999999999999974 5899999999999999999999999999999887
Q ss_pred ccCHhHHHHHHHHHHHcCCCeecCcC-cHHHHHHHHHH----cCCeEEEecCCCCcccccCCeeEEEeecCCCCCCccEE
Q 019386 81 KVTKQHNDDCKRLLKLMGVPVVEAPS-EAEAQCAALCK----SGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 155 (342)
Q Consensus 81 ~vt~~~~~~~~~lL~~~Gi~~i~Ap~-EAdaq~A~L~~----~g~v~~V~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~ 155 (342)
..|++.++++|+.||||++++|| ||||+||+|++ .|..++|+|+|+|++||++++|++... . + ..
T Consensus 93 ---~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~~~v~~~~~-~--g----~~ 162 (832)
T 1bgx_T 93 ---PRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHP-E--G----YL 162 (832)
T ss_dssp ---TTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCCTTBCBCCS-S--S----CC
T ss_pred ---HHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCcCCEEEEeC-C--C----cE
Confidence 56788999999999999999998 99999999988 688888999999999999999865433 1 1 56
Q ss_pred EeHHHHHHHhCCCHHHHHHHHHHhC--CCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHH-----H
Q 019386 156 FEVAKILEELNLTMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-----A 228 (342)
Q Consensus 156 ~~~~~v~~~lgl~~~q~id~~~L~G--~Dy~~~IpGiG~ktA~~Li~~~~sle~il~~l~~~k~~i~~~~~~~~-----~ 228 (342)
|+.+.+.++||++|+||+|+|+|+| |||.+||||||||||++||++|||+|+|++++++.+.++++++.... .
T Consensus 163 ~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle~i~~~~~~~~~~~~~~l~~~~~~a~ls 242 (832)
T 1bgx_T 163 ITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLS 242 (832)
T ss_dssp BCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSCSSSSSCCCCCTTTSHHHHSSCSSTTSG
T ss_pred EcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHHHHHHHHHHhChHHHHHHHHhHHHHHHH
Confidence 8899999999999999999999999 99999999999999999999999999999999877666665554211 2
Q ss_pred HHHh-CCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCC
Q 019386 229 RRLF-KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 267 (342)
Q Consensus 229 ~~~f-~~p~v~~~~~~~~~~~~~pd~e~l~~fl~~~~~f~ 267 (342)
+.+. +.++|..+.++ + .|..||.++|.+|| ++++|+
T Consensus 243 ~~L~~i~~d~~~~~~~-~-~~~~~d~~~l~~~~-~~~~f~ 279 (832)
T 1bgx_T 243 WDLAKVRTDLPLEVDF-A-KRREPDRERLRAFL-ERLEFG 279 (832)
T ss_dssp GGSSCCCSCCCCCCCC-C-CCCCCCHHHHHHHH-TTTTCC
T ss_pred HHHHhhccCCCCCCCh-h-HcCCccHHHHHHHH-HHcCCH
Confidence 3332 34444444555 4 89999999999999 699996
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.94 E-value=1.5e-27 Score=223.81 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=130.0
Q ss_pred CcCCCCCcchHHHH-HHHHHHHHHHc--CCCc---EEEEeCC-CCchhhHHHHHHHhhhhhchHHHHHHHHcCCHHHHHH
Q 019386 2 LTNEAGEVTSHLQG-MFTRTIRLLEA--GMKP---IYVFDGQ-PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 74 (342)
Q Consensus 2 l~~~~G~~t~~l~g-~~~r~~~ll~~--gi~P---v~VFDG~-~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~k 74 (342)
+++++|.+|++++| |++.+.++++. +.+| ++|||+. .++||++.++.||++|.++|+++. .+.+.+
T Consensus 32 f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKanR~~~PeeL~-----~Q~~~l-- 104 (305)
T 3h7i_A 32 FPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREEST-----WDWEGY-- 104 (305)
T ss_dssp SCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHHHHHHHHHCS-----SCHHHH--
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccCCCCCCHHHH-----HHHHHh--
Confidence 67899999999988 88888888763 2456 4689987 689999999999999999999871 111111
Q ss_pred HhhhccccCHhHH-HHHHHHHHHcCCCeecCcC-cHHHHHHHHHH----cCCeEEEecCCCCcccccC-CeeEEEeecCC
Q 019386 75 FSKRTVKVTKQHN-DDCKRLLKLMGVPVVEAPS-EAEAQCAALCK----SGQVYAVASEDMDSLTFGA-PRFLRHLMDPS 147 (342)
Q Consensus 75 ~~~r~~~vt~~~~-~~~~~lL~~~Gi~~i~Ap~-EAdaq~A~L~~----~g~v~~V~S~DsD~l~fg~-~~v~~~l~~~~ 147 (342)
..|+ +.++++|++||||++..|| ||||.||+|++ .|.-..|+|+|+|++|+.. +.|. +..+.
T Consensus 105 ---------~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~~~V~--~~~~~ 173 (305)
T 3h7i_A 105 ---------FESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPNVK--QWSPM 173 (305)
T ss_dssp ---------HHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGSSSEE--EEETT
T ss_pred ---------hhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCCCCccccccCCCeE--EEecC
Confidence 2344 7899999999999999999 99999999987 4666679999999999998 6663 22221
Q ss_pred CCCCccEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCCCC---CCccHH
Q 019386 148 SRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI---RGIGGQ 193 (342)
Q Consensus 148 ~~~~~~~~~~~~~v~~~lgl~~~q~id~~~L~G~Dy~~~I---pGiG~k 193 (342)
. .+.|.+++|+ |+|++|+++|+| |.+||| ||||+.
T Consensus 174 ~---------~~~V~ek~Gv-P~q~iD~~aL~G-DsSDNIPGVpGIG~~ 211 (305)
T 3h7i_A 174 H---------KKWVKIKSGS-AEIDCMTKILKG-DKKDNVASVKVRSDF 211 (305)
T ss_dssp T---------TEEECSSCSC-HHHHHHHHHHHC-BGGGTBCCTTSCTTH
T ss_pred C---------HHHHHHHhCC-HHHHhhHHheeC-ccccCCCCCCcCCcc
Confidence 1 1336678998 999999999999 999876 578985
No 12
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=97.89 E-value=0.00011 Score=80.03 Aligned_cols=161 Identities=17% Similarity=0.236 Sum_probs=85.4
Q ss_pred EEEeCCCCchhhHHHHHHHhhhhh-chHHHHHHHHcCCHHHHHHHhhhccccCHhHHHHHHHHHHH------------cC
Q 019386 32 YVFDGQPPDLKKQELAKRYSKRAD-ATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKL------------MG 98 (342)
Q Consensus 32 ~VFDG~~~~~K~~~~~~rk~~R~~-~~~~l~~a~~~g~~~~~~k~~~r~~~vt~~~~~~~~~lL~~------------~G 98 (342)
+.+||.+|-.|......|+-+... +.....++...|.......|-..+++.=.+.+..+.+.|+. -+
T Consensus 83 iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~fdsn~ITPGT~FM~~l~~~L~~~i~~k~~~d~~w~~ 162 (1140)
T 2y35_A 83 LSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELREHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQR 162 (1140)
T ss_dssp EECCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCSGGGSTTSHHHHHHHHHHHHHHHHHHHHCGGGSS
T ss_pred EEecCCCchhHHHHHHHHHhhhhhhhhhhHHHHhhcCCccccccCCccccCCCcHHHHHHHHHHHHHHHHHhccCccccc
Confidence 469999997776655444332111 11122233444443322233232322211233322222221 35
Q ss_pred CCeecC----cCcHHHHHHHHHHc---------CCeEEEecCCCCccccc--C--Ce--eEEEeecCCC--C-----CCc
Q 019386 99 VPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFG--A--PR--FLRHLMDPSS--R-----KIP 152 (342)
Q Consensus 99 i~~i~A----p~EAdaq~A~L~~~---------g~v~~V~S~DsD~l~fg--~--~~--v~~~l~~~~~--~-----~~~ 152 (342)
+.+|.+ |||+|-=|-...+. +..++|++.|.|+++++ . ++ ++|.-...+. + ...
T Consensus 163 ~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~~~ 242 (1140)
T 2y35_A 163 CTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEETR 242 (1140)
T ss_dssp SEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGGCE
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeecccccccccccccccccc
Confidence 677765 89999866665541 35678999999999987 2 33 3332111110 0 123
Q ss_pred cEEEeHHHHHHH----h--------CCC----HHHHHHHHHHhCCCCCCCCCCccH
Q 019386 153 VMEFEVAKILEE----L--------NLT----MDQFIDLCILSGCDYCDSIRGIGG 192 (342)
Q Consensus 153 ~~~~~~~~v~~~----l--------gl~----~~q~id~~~L~G~Dy~~~IpGiG~ 192 (342)
+..++...+.+. + .++ .+.|+.+|.|+|+||.+++|++..
T Consensus 243 f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I 298 (1140)
T 2y35_A 243 FFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHI 298 (1140)
T ss_dssp EEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCT
T ss_pred eEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCcccc
Confidence 456676544332 1 123 467888999999999999998864
No 13
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=97.76 E-value=0.00016 Score=78.31 Aligned_cols=178 Identities=21% Similarity=0.307 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCCc---E-EEEeCCCCchhhHHHHHHHhhhh-hchHHHHHHHHcCCHHH-HHHHhhhccccCHhHHH
Q 019386 15 GMFTRTIRLLEAGMKP---I-YVFDGQPPDLKKQELAKRYSKRA-DATDDLAEAVEAGNKED-IEKFSKRTVKVTKQHND 88 (342)
Q Consensus 15 g~~~r~~~ll~~gi~P---v-~VFDG~~~~~K~~~~~~rk~~R~-~~~~~l~~a~~~g~~~~-~~k~~~r~~~vt~~~~~ 88 (342)
.+|..+-+|+.. |+| + ..+||.+|-.|......|+-+.. ++.....++...|+.-. -..|-..+++.-.+.+.
T Consensus 63 ~if~yid~l~~~-vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM~ 141 (1155)
T 3pie_A 63 KIFSYIDHLFHT-IKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMA 141 (1155)
T ss_pred HHHHHHHHHHHh-cCcceEEEEEecCCCChhHHHHHHHHHHHhhhhhhHHHHHHHhcCCcCCcccccccccccCCcHHHH
Confidence 444444445543 777 2 46999999777766555443221 22233344555553210 11222222222113333
Q ss_pred HHHHHHHH------------cCCCeecC----cCcHHHHHHHHHHc---------CCeEEEecCCCCcccccC----Ce-
Q 019386 89 DCKRLLKL------------MGVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFGA----PR- 138 (342)
Q Consensus 89 ~~~~lL~~------------~Gi~~i~A----p~EAdaq~A~L~~~---------g~v~~V~S~DsD~l~fg~----~~- 138 (342)
.+...|+. -++.+|.+ |||+|-=|....+. +..++|++.|.|+++++- ++
T Consensus 142 ~L~~~L~~~i~~k~~~d~~w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f 221 (1155)
T 3pie_A 142 KLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHF 221 (1155)
T ss_pred HHHHHHHHHHHHHhhCCcCccccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcE
Confidence 44333332 24566665 89999877766652 346789999999999972 22
Q ss_pred -eEEEe--ecCCC------CCCccEEEeHHHHHHHh-------------CCC----HHHHHHHHHHhCCCCCCCCCCccH
Q 019386 139 -FLRHL--MDPSS------RKIPVMEFEVAKILEEL-------------NLT----MDQFIDLCILSGCDYCDSIRGIGG 192 (342)
Q Consensus 139 -v~~~l--~~~~~------~~~~~~~~~~~~v~~~l-------------gl~----~~q~id~~~L~G~Dy~~~IpGiG~ 192 (342)
++|.- +.... ...++..++..-+.+.+ .++ -+.|+.+|.|+|+||.+++|.+.+
T Consensus 222 ~iLRe~v~f~~~~~~~~~~~~~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I 301 (1155)
T 3pie_A 222 CLLREEVTFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHL 301 (1155)
T ss_pred EEEeeccccCcccccccccccCCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccCc
Confidence 34432 11111 01245566765333222 122 256778999999999999998875
Q ss_pred H
Q 019386 193 Q 193 (342)
Q Consensus 193 k 193 (342)
.
T Consensus 302 ~ 302 (1155)
T 3pie_A 302 K 302 (1155)
T ss_pred C
Confidence 4
No 14
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=97.49 E-value=0.00054 Score=72.22 Aligned_cols=95 Identities=23% Similarity=0.367 Sum_probs=61.6
Q ss_pred CCCeecC----cCcHHHHHHHHHHc---------CCeEEEecCCCCccccc----CCe--eEEEe--ecCCC--------
Q 019386 98 GVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFG----APR--FLRHL--MDPSS-------- 148 (342)
Q Consensus 98 Gi~~i~A----p~EAdaq~A~L~~~---------g~v~~V~S~DsD~l~fg----~~~--v~~~l--~~~~~-------- 148 (342)
++.+|.+ |||+|--|....+. +..++|++.|.|++++| -++ |+|.- +..+.
T Consensus 195 ~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~ 274 (899)
T 3fqd_A 195 NVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEER 274 (899)
T ss_dssp TCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC---------CTTT
T ss_pred cceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecccCcCccccchhhh
Confidence 6677765 89999988777652 34778999999999997 233 34421 11000
Q ss_pred ----------------CCCccEEEeHHHHHH----HhCC-------C----HHHHHHHHHHhCCCCCCCCCCccH
Q 019386 149 ----------------RKIPVMEFEVAKILE----ELNL-------T----MDQFIDLCILSGCDYCDSIRGIGG 192 (342)
Q Consensus 149 ----------------~~~~~~~~~~~~v~~----~lgl-------~----~~q~id~~~L~G~Dy~~~IpGiG~ 192 (342)
...++..+++.-+.+ +|.+ + -+.||.+|.|+|+||.+++|.+-+
T Consensus 275 ~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I 349 (899)
T 3fqd_A 275 LGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDI 349 (899)
T ss_dssp TTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCG
T ss_pred ccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhCcccCCCCCccCc
Confidence 012355666654433 2322 2 358899999999999999997654
No 15
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.63 E-value=0.0009 Score=48.18 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
+.|||||++++..|++.|||+++|..
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~ 32 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAA 32 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHT
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHH
Confidence 57999999999999999999998864
No 16
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=96.22 E-value=0.0028 Score=48.34 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
+.||||||+++..|++.|+|+++|..
T Consensus 21 ~~IpGIG~kr~~~LL~~FgSl~~i~~ 46 (84)
T 1z00_B 21 LKMPGVNAKNCRSLMHHVKNIAELAA 46 (84)
T ss_dssp HTCSSCCHHHHHHHHHHSSCHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHcCCHHHHHH
Confidence 36999999999999999999998865
No 17
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=94.89 E-value=0.02 Score=43.59 Aligned_cols=26 Identities=15% Similarity=0.475 Sum_probs=23.6
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
.+|||||+++|..|++.|+++++++.
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~~l~~ 47 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLEQLIA 47 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHHh
Confidence 46999999999999999999988874
No 18
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=94.89 E-value=0.02 Score=41.65 Aligned_cols=25 Identities=20% Similarity=0.499 Sum_probs=23.1
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
+|||||+++|..|+..|+++++++.
T Consensus 18 ~i~giG~~~a~~Ll~~fgs~~~l~~ 42 (75)
T 1x2i_A 18 GLPHVSATLARRLLKHFGSVERVFT 42 (75)
T ss_dssp TSTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 6999999999999999999988865
No 19
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.82 E-value=0.011 Score=43.98 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHH
Q 019386 185 DSIRGIGGQTALKLIRQHGSIETILEN 211 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~~~sle~il~~ 211 (342)
.+|||||+++|.+|+..|++++++.+.
T Consensus 27 ~~I~gIG~~~A~~Ll~~fgsl~~l~~a 53 (78)
T 1kft_A 27 ETIEGVGPKRRQMLLKYMGGLQGLRNA 53 (78)
T ss_dssp GGCTTCSSSHHHHHHHHHSCHHHHHHC
T ss_pred hcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 369999999999999999999888753
No 20
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=94.38 E-value=0.029 Score=42.93 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=22.8
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
+|||||+++|..|+..|+++++++.
T Consensus 36 ~IpgIG~~~A~~Ll~~fgs~~~l~~ 60 (91)
T 2a1j_B 36 TVKSVNKTDSQTLLTTFGSLEQLIA 60 (91)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHHS
T ss_pred cCCCCCHHHHHHHHHHCCCHHHHHh
Confidence 6899999999999999999988764
No 21
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=93.96 E-value=0.03 Score=50.11 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
++|||||+++|..|++.|||++++.+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~~i~~ 196 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLENIRS 196 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHcCCHHHHHh
Confidence 78999999999999999999988753
No 22
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=90.91 E-value=0.043 Score=49.31 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 184 CDSIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 184 ~~~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
.++|||||+++|..|++.|||+++|.+
T Consensus 175 L~~IpGIG~k~ak~Ll~~FGSl~~i~~ 201 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYFGSVKKMKE 201 (226)
T ss_dssp ---------------------------
T ss_pred ccccCCCCHHHHHHHHHHhCCHHHHHh
Confidence 368999999999999999999988764
No 23
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=88.71 E-value=0.19 Score=44.39 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=22.6
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
+|||||+++|..|++.||++++++.
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~~~l~~ 190 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSLERFFT 190 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHTT
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 5999999999999999999888753
No 24
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=87.68 E-value=0.25 Score=43.16 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=26.5
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHhhc----CCCCCCCchHHHHHHh--CCCCcCC-ccccccCCCCCCCHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQHGSIETILENINRER----YQIPEDWPYQEARRLF--KEPEVVT-DEEQLQIKWSAPDEEGLIN 258 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~~sle~il~~l~~~k----~~i~~~~~~~~~~~~f--~~p~v~~-~~~~~~~~~~~pd~e~l~~ 258 (342)
+|||||||+|..|+..|++ +.+.+.+.... .++| ......|..++ ++..+.. .... . .-.....+....
T Consensus 76 ~v~GIGpk~A~~iL~~f~~-~~l~~aI~~~d~~~L~~vp-GIG~K~A~rI~~~lk~k~~~~~~~~-~-~~~~~~~~ea~~ 151 (191)
T 1ixr_A 76 SVSGVGPKVALALLSALPP-RLLARALLEGDARLLTSAS-GVGRRLAERIALELKGKVPPHLLAG-E-KVESEAAEEAVM 151 (191)
T ss_dssp SSSCCCHHHHHHHHHHSCH-HHHHHHHHTTCHHHHTTST-TCCHHHHHHHHHHHTTTSCSCC------------------
T ss_pred cCCCcCHHHHHHHHHhCCh-HHHHHHHHhCCHHHHHhCC-CCCHHHHHHHHHHHHHhhccccccc-c-ccccccHHHHHH
Confidence 3999999999999999997 33433332110 1222 22233333332 1222110 0000 0 000012234455
Q ss_pred HHHHhcCCChHHHHHHHHHH
Q 019386 259 FLVSENGFNSDRVTKAIEKI 278 (342)
Q Consensus 259 fl~~~~~f~~~rv~~~~~~l 278 (342)
-| ..+||++..+.+.+..+
T Consensus 152 AL-~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 152 AL-AALGFKEAQARAVVLDL 170 (191)
T ss_dssp --------------------
T ss_pred HH-HHcCCCHHHHHHHHHHH
Confidence 55 47999988888887765
No 25
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=85.03 E-value=0.54 Score=45.76 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=23.0
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
.||||||.+|..|+.+|||++.+..
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe~Vm~ 496 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYSKVRE 496 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcCHHHHHh
Confidence 4899999999999999999998875
No 26
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=84.79 E-value=0.42 Score=42.12 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=17.4
Q ss_pred CCCccHHHHHHHHHHcCC
Q 019386 187 IRGIGGQTALKLIRQHGS 204 (342)
Q Consensus 187 IpGiG~ktA~~Li~~~~s 204 (342)
|+|||||+|..|++.|++
T Consensus 78 V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 78 TNGVGPKLALAILSGMSA 95 (203)
T ss_dssp SSSCCHHHHHHHHHHSCH
T ss_pred CCCcCHHHHHHHHhhCCh
Confidence 999999999999999987
No 27
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=80.61 E-value=0.76 Score=40.72 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=27.5
Q ss_pred HHHhCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHH
Q 019386 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 209 (342)
Q Consensus 162 ~~~lgl~~~q~id~~~L~G~Dy~~~IpGiG~ktA~~Li~~~~sle~il 209 (342)
...||+....-.++..++. +|+|||||+|..++..|+. +.+.
T Consensus 73 ~~LyGF~~~~Er~lf~~L~-----sv~GIGpk~A~~Ils~~~~-~~l~ 114 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLL-----SVSGVGPRLAMAALAVHDA-PALR 114 (212)
T ss_dssp EEEEEESSHHHHHHHHHHH-----TSTTCCHHHHHHHHHHSCH-HHHH
T ss_pred cceEecCcHHHHHHHHHhc-----CcCCcCHHHHHHHHHhCCH-HHHH
Confidence 3346654344444444444 2999999999999998874 4443
No 28
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=76.92 E-value=0.59 Score=38.39 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=18.7
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ--HGSIETIL 209 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~--~~sle~il 209 (342)
.+|||||++|-++|+. |.++|+++
T Consensus 67 ~LpGiGp~~A~~II~~GpF~svedL~ 92 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKNAPYESVEDVL 92 (134)
T ss_dssp GSTTCTHHHHHHHHHTCCCSSGGGGG
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 3799999999999964 55676654
No 29
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=73.64 E-value=0.68 Score=41.87 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHHHH-cCCHHHHH
Q 019386 185 DSIRGIGGQTALKLIRQ-HGSIETIL 209 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~-~~sle~il 209 (342)
..||||||++|..|+.. |+++++|.
T Consensus 18 ~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 18 TDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp --------------------------
T ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 36899999999999998 88988875
No 30
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=71.14 E-value=3 Score=38.65 Aligned_cols=29 Identities=17% Similarity=0.525 Sum_probs=26.9
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 019386 186 SIRGIGGQTALKLIRQHGSIETILENINR 214 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~~sle~il~~l~~ 214 (342)
.||||++..|..|+.+|+|+..+++..+.
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~ 269 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDK 269 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 58999999999999999999999998865
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=68.47 E-value=6.2 Score=39.90 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=18.9
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ-HGSIETILENI 212 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~-~~sle~il~~l 212 (342)
+|+|||||+|..|+.. +.|++++...+
T Consensus 101 ~v~GVGpk~A~~i~~~G~~s~edL~~a~ 128 (578)
T 2w9m_A 101 GVRGLGPKKIRSLWLAGIDSLERLREAA 128 (578)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHcCCCCHHHHHHHH
Confidence 5777888888887775 45677766653
No 32
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=68.34 E-value=2.7 Score=43.43 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
.||||||+++|..|++.|+|++++.+
T Consensus 515 lgi~~VG~~~Ak~La~~Fgsl~~l~~ 540 (671)
T 2owo_A 515 LGIREVGEATAAGLAAYFGTLEALEA 540 (671)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred hcccCccHHHHHHHHHHcCCHHHHHh
Confidence 47899999999999999999998753
No 33
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=68.03 E-value=1.1 Score=45.93 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHH
Q 019386 185 DSIRGIGGQTALKLIRQHGSIETILEN 211 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~~~sle~il~~ 211 (342)
-||||||+++|..|++.|+|++.+.+.
T Consensus 532 LGIp~VG~~~ak~La~~Fgsle~L~~A 558 (615)
T 3sgi_A 532 LSIRHVGPTAARALATEFGSLDAIAAA 558 (615)
T ss_dssp ---------------------------
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 478999999999999999999887653
No 34
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=66.58 E-value=2.7 Score=30.34 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=15.0
Q ss_pred CCCCccHHHHHHHHHHc
Q 019386 186 SIRGIGGQTALKLIRQH 202 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~ 202 (342)
.|||||+++|.+|+..+
T Consensus 31 ~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 31 ALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TSTTCCHHHHHHHHHTC
T ss_pred hCCCCCHHHHHHHHHHc
Confidence 57999999999999864
No 35
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=65.08 E-value=8.8 Score=36.88 Aligned_cols=41 Identities=34% Similarity=0.365 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHH
Q 019386 167 LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN 213 (342)
Q Consensus 167 l~~~q~id~~~L~G~Dy~~~IpGiG~ktA~~Li~~~~sle~il~~l~ 213 (342)
++.++...+..|.- +||||++++.+|+..||+.+++++.+.
T Consensus 17 m~~~e~~~wL~L~~------~~gvG~~~~~~Ll~~fgs~~~~~~a~~ 57 (382)
T 3maj_A 17 LTEAQRIDWMRLIR------AENVGPRTFRSLINHFGSARAALERLP 57 (382)
T ss_dssp SCHHHHHHHHHHHT------STTCCHHHHHHHHHHHSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCHHHHHHcCH
Confidence 55666666666653 689999999999999999999887653
No 36
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=63.16 E-value=4.4 Score=38.17 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=21.7
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ-HGSIETILEN 211 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~-~~sle~il~~ 211 (342)
+||||||+||.+|..+ +.|++++.+.
T Consensus 100 ~v~GiG~k~a~~l~~~Gi~tledL~~a 126 (335)
T 2bcq_A 100 NIWGAGTKTAQMWYQQGFRSLEDIRSQ 126 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred cCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 6899999999999885 4588888764
No 37
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=62.01 E-value=3.7 Score=39.41 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=23.0
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHH
Q 019386 187 IRGIGGQTALKLIRQHGSIETILEN 211 (342)
Q Consensus 187 IpGiG~ktA~~Li~~~~sle~il~~ 211 (342)
||+||++.|-.|+.+|||+++|+..
T Consensus 320 IPrl~~~iae~Lv~~FGsLq~Il~A 344 (377)
T 3c1y_A 320 VARIPLSIGYNVVRMFKTLDQISKA 344 (377)
T ss_dssp TSCCCHHHHHHHHHHHCSHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 7999999999999999999998753
No 38
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=61.70 E-value=6 Score=34.63 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHhCCC---CC--CCCCCccHHHHHHHHHH-----cCCHHHHHHHH
Q 019386 167 LTMDQFIDLCILSGCD---YC--DSIRGIGGQTALKLIRQ-----HGSIETILENI 212 (342)
Q Consensus 167 l~~~q~id~~~L~G~D---y~--~~IpGiG~ktA~~Li~~-----~~sle~il~~l 212 (342)
-....|+++..-++-- .. ..+||||+++|..+|.. |.|++++.+.+
T Consensus 112 ~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV 167 (205)
T 2i5h_A 112 QDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRV 167 (205)
T ss_dssp TTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHS
T ss_pred hchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 3567888876555421 11 14799999999999974 67888887654
No 39
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=61.39 E-value=2 Score=33.20 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=17.3
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHH
Q 019386 186 SIRGIGGQTALKLIRQ--HGSIETI 208 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~--~~sle~i 208 (342)
.|||||++.|..+|.. |.|++++
T Consensus 30 ~lpGIG~~~A~~IV~~GpF~s~edL 54 (97)
T 3arc_U 30 QYRGLYPTLAKLIVKNAPYESVEDV 54 (97)
T ss_dssp GSTTCTTHHHHHHHHHCCCSSGGGG
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHH
Confidence 4799999999999983 3455544
No 40
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=61.17 E-value=5.2 Score=40.38 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=22.0
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ--HGSIETILENIN 213 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~--~~sle~il~~l~ 213 (342)
+|+|||||+|..|+.. +.+++++...+.
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~ 126 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAALD 126 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 5788999999999886 468888776553
No 41
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=60.58 E-value=4.9 Score=38.60 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.0
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ-HGSIETILE 210 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~-~~sle~il~ 210 (342)
+||||||+||.+|..+ +.|++++.+
T Consensus 125 ~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 6899999999999886 347888775
No 42
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=60.34 E-value=4.2 Score=38.28 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ-HGSIETILE 210 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~-~~sle~il~ 210 (342)
+||||||++|.+|..+ +.|++++.+
T Consensus 102 ~V~GiGpk~a~~l~~~Gi~tledL~~ 127 (335)
T 2fmp_A 102 RVSGIGPSAARKFVDEGIKTLEDLRK 127 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred CCCCCCHHHHHHHHHcCCCCHHHHHH
Confidence 6899999999999886 348888876
No 43
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=60.15 E-value=4.2 Score=42.01 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.6
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHH
Q 019386 185 DSIRGIGGQTALKLIRQHGSIETIL 209 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~~~sle~il 209 (342)
-||||||+++|..|++.|+|++++.
T Consensus 510 lGI~~VG~~~Ak~La~~Fgsl~~l~ 534 (667)
T 1dgs_A 510 LGLPGVGEVLARNLARRFGTMDRLL 534 (667)
T ss_dssp TTCSSCCHHHHHHHHHTTSBHHHHT
T ss_pred hccCCccHHHHHHHHHHcCCHHHHH
Confidence 4799999999999999999998874
No 44
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=58.05 E-value=5.5 Score=37.93 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.2
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ-HGSIETIL 209 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~-~~sle~il 209 (342)
+||||||+||.+|..+ +.|++++.
T Consensus 106 ~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 106 QVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 6899999999999886 34788776
No 45
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=56.12 E-value=7.3 Score=39.57 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCCee
Q 019386 89 DCKRLLKLMGVPVV 102 (342)
Q Consensus 89 ~~~~lL~~~Gi~~i 102 (342)
+..+.|+.+|+|+.
T Consensus 241 e~l~~L~~~Gf~v~ 254 (586)
T 4glx_A 241 GRLLQFKKWGLPVS 254 (586)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCCc
Confidence 45567888999864
No 46
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=46.62 E-value=9.6 Score=33.55 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHhCCCCC--CCCCCccHHHHHHHHHHcC
Q 019386 168 TMDQFIDLCILSGCDYC--DSIRGIGGQTALKLIRQHG 203 (342)
Q Consensus 168 ~~~q~id~~~L~G~Dy~--~~IpGiG~ktA~~Li~~~~ 203 (342)
+++.|. -+++.+ |.. ..|||||+|+|-+++.++.
T Consensus 109 ~~~~l~-~aI~~~-d~~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 109 DAPALR-QVLADG-NVAALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp CHHHHH-HHHHTT-CHHHHHTSTTCCHHHHHHHHHHHT
T ss_pred CHHHHH-HHHHhC-CHHHHhhCCCCCHHHHHHHHHHHH
Confidence 444443 234445 554 2689999999999987754
No 47
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=45.67 E-value=8.5 Score=33.88 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=13.1
Q ss_pred CCCCccHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIR 200 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~ 200 (342)
.+||||+|+|..|.-
T Consensus 30 ~LPGIG~KsA~RlA~ 44 (212)
T 3vdp_A 30 KLPGIGPKTAQRLAF 44 (212)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHH
Confidence 689999999998864
No 48
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=44.83 E-value=15 Score=23.32 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 250 ~pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
.|+.+.+..++ ++||+++.+..+|+.
T Consensus 2 ~p~e~~i~~L~--~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 2 TPKSLAVEELS--GMGFTEEEAHNALEK 27 (43)
T ss_dssp CHHHHHHHHHH--TTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 36667776665 799999988887764
No 49
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=43.86 E-value=3.7 Score=23.51 Aligned_cols=14 Identities=57% Similarity=0.945 Sum_probs=10.2
Q ss_pred cCCCCccccccCccc
Q 019386 284 KSSQGRLESFFKPVA 298 (342)
Q Consensus 284 ~~~Q~~l~~ff~~~~ 298 (342)
.+.| +|++||+..+
T Consensus 7 ~g~~-TLesFFK~L~ 20 (26)
T 2zvk_U 7 EGMQ-TLESFFKPLT 20 (26)
T ss_pred cccc-cHHHHhccCC
Confidence 3445 8999998654
No 50
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=41.58 E-value=13 Score=28.19 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=15.0
Q ss_pred CCCCccHHHHHHHHHHc
Q 019386 186 SIRGIGGQTALKLIRQH 202 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~ 202 (342)
.|||||+++|.+|+..+
T Consensus 44 ~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 44 SLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HSTTCCHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHH
Confidence 58999999999999864
No 51
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=40.32 E-value=8.8 Score=32.06 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHcC
Q 019386 187 IRGIGGQTALKLIRQHG 203 (342)
Q Consensus 187 IpGiG~ktA~~Li~~~~ 203 (342)
|.|||..+|..++++.+
T Consensus 33 I~GIG~~~A~~I~~~~g 49 (152)
T 3iz6_M 33 IKGVGRRFSNIVCKKAD 49 (152)
T ss_dssp STTCCHHHHHHHHHHHT
T ss_pred ccCcCHHHHHHHHHHcC
Confidence 68999999999999865
No 52
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=40.10 E-value=12 Score=33.35 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.5
Q ss_pred CCCCccHHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ 201 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~ 201 (342)
.+||||||+|..|.-.
T Consensus 16 ~LPGIG~KSA~RlA~h 31 (228)
T 1vdd_A 16 RLPGIGPKSAQRLAFH 31 (228)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 6799999999988643
No 53
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=38.56 E-value=37 Score=28.27 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=35.8
Q ss_pred cCHhHHHHHHHHHHHcCCC-----eecCcC--cHHHHHHHHHHcCCeEEEe
Q 019386 82 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~-----~i~Ap~--EAdaq~A~L~~~g~v~~V~ 125 (342)
|+..+++-+.+.|...|+. ++..|| |-=-.+..|++.|..|+|+
T Consensus 26 I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1rvv_A 26 ITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAII 76 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 4467788899999999974 778899 8778888889888888877
No 54
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=38.40 E-value=16 Score=31.59 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.2
Q ss_pred CCCCCccHHHHHHHHHHcC
Q 019386 185 DSIRGIGGQTALKLIRQHG 203 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~~~ 203 (342)
..+||||+|+|.+++..+.
T Consensus 110 ~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 110 TSASGVGRRLAERIALELK 128 (191)
T ss_dssp TTSTTCCHHHHHHHHHHHT
T ss_pred HhCCCCCHHHHHHHHHHHH
Confidence 3689999999999988764
No 55
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=38.27 E-value=20 Score=36.40 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.3
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 019386 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (342)
Q Consensus 185 ~~IpGiG~ktA~~Li~~~~sle~il~ 210 (342)
-|||+||+.+|..|.+.|+|++.+.+
T Consensus 515 LGI~~vG~~~a~~La~~f~sl~~l~~ 540 (586)
T 4glx_A 515 LGIREVGEATAAGLAAYFGTLEALEA 540 (586)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred cCCCchhHHHHHHHHHHcCCHHHHHc
Confidence 47999999999999999999998865
No 56
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=36.92 E-value=38 Score=28.16 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=35.7
Q ss_pred cCHhHHHHHHHHHHHcCCC-----eecCcC--cHHHHHHHHHHcCCeEEEe
Q 019386 82 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~-----~i~Ap~--EAdaq~A~L~~~g~v~~V~ 125 (342)
|+..+++-+.+.|...|+. ++..|| |-=-.+..|++.|..|+|+
T Consensus 26 I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1hqk_A 26 LVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVI 76 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 4467788899999999974 778899 8777888888888888877
No 57
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=36.55 E-value=45 Score=32.99 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCeecCcCcHHHHHHHHHHc
Q 019386 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118 (342)
Q Consensus 87 ~~~~~~lL~~~Gi~~i~Ap~EAdaq~A~L~~~ 118 (342)
+.++.+-|+.+|++.++.-|++.+. ..|++.
T Consensus 97 L~dL~~~L~~lG~~L~v~~G~p~~v-~~L~~~ 127 (506)
T 3umv_A 97 LRRLAADAAARHLPFFLFTGGPAEI-PALVQR 127 (506)
T ss_dssp HHHHHHHHHHTTCCEEEESSCTTHH-HHHHHH
T ss_pred HHHHHHHHHHcCCceEEEecChHHH-HHHHHh
Confidence 3445555555666666655555555 555543
No 58
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=35.76 E-value=3.8 Score=37.93 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=26.9
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 019386 186 SIRGIGGQTALKLIRQHGSIETILENINR 214 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~~sle~il~~l~~ 214 (342)
.|||||+++|..++..|+++..+++.++.
T Consensus 237 ~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~ 265 (307)
T 2zix_A 237 QVRGVSGEKAAALVDRYSTPASLLAAYDA 265 (307)
T ss_dssp CSTTCCSTTTTTSSSSSCSHHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 58999999999999999999999998874
No 59
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=35.75 E-value=29 Score=28.98 Aligned_cols=44 Identities=34% Similarity=0.373 Sum_probs=35.8
Q ss_pred cCHhHHHHHHHHHHHcC-C-----CeecCcC--cHHHHHHHHHHcCCeEEEe
Q 019386 82 VTKQHNDDCKRLLKLMG-V-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~G-i-----~~i~Ap~--EAdaq~A~L~~~g~v~~V~ 125 (342)
|+..+++-+.+.|...| + .++..|| |-=-.+..|++.|..|+|+
T Consensus 26 I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 77 (156)
T 3nq4_A 26 INDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVV 77 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 44677888999999999 5 5788898 8888888888888777776
No 60
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=35.38 E-value=42 Score=28.06 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=35.1
Q ss_pred cCHhHHHHHHHHHHH-cCCC-----eecCcC--cHHHHHHHHHHcCCeEEEe
Q 019386 82 VTKQHNDDCKRLLKL-MGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (342)
Q Consensus 82 vt~~~~~~~~~lL~~-~Gi~-----~i~Ap~--EAdaq~A~L~~~g~v~~V~ 125 (342)
|+..+++-+.+.|.. .|+. ++..|| |-=-.+..|++.|..|+|+
T Consensus 31 I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 82 (159)
T 1kz1_A 31 AIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVI 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 345677888888988 8864 788999 8777888888888777776
No 61
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=35.27 E-value=65 Score=22.45 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=38.1
Q ss_pred cCcHHHHHHHHHHcCCeEEEecCCCCcccccCCeeEEEeecCCCCCCccEEEeHHHHHHHhCCCHHHHHH
Q 019386 105 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFID 174 (342)
Q Consensus 105 p~EAdaq~A~L~~~g~v~~V~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v~~~lgl~~~q~id 174 (342)
|.-..+.+..|.+.|+...=.+++-..|.-..... ..+-.. .+ .+....+..|+...|++.++|.+
T Consensus 4 p~~~~elik~L~~~G~~~~r~~GSH~~~~~~~~~~-~~vP~h--~~-ei~~g~lk~Ilkqagl~~eef~~ 69 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVERMAKGGHRLYTHPDGRI-VVVPFH--SG-ELPKGTFKRILRDAGLTEEEFHN 69 (70)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEETTEEEEECTTSCE-EEEECS--SS-SCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHCCCEEeCCCCCCceEecCCCCe-eEecCC--cC-cCCHHHHHHHHHHcCCCHHHHhh
Confidence 44556667777777765322344444444322221 122211 11 45567888999999999999865
No 62
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=35.18 E-value=22 Score=35.72 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=27.7
Q ss_pred HHHHHhCC-CHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHH
Q 019386 160 KILEELNL-TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201 (342)
Q Consensus 160 ~v~~~lgl-~~~q~id~~~L~G~Dy~~~IpGiG~ktA~~Li~~ 201 (342)
.+++.+|+ +++++... +..| | ...+||||+|+|.+++..
T Consensus 108 ~~~~~lg~~~~~~l~~a-~~~~-~-l~~~~GiG~k~a~~i~~~ 147 (575)
T 3b0x_A 108 LLYEGLGIDSLEKLKAA-LDRG-D-LTRLKGFGPKRAERIREG 147 (575)
T ss_dssp HHHHTSCCCSHHHHHHH-HHHT-G-GGGSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHH-HHcC-C-cccCCCCCccHHHHHHHH
Confidence 44555664 78887763 4456 6 457899999999999654
No 63
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=34.69 E-value=24 Score=29.53 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=35.9
Q ss_pred cCHhHHHHHHHHHHHcCC-----CeecCcC--cHHHHHHHHHHcCCeEEEe
Q 019386 82 VTKQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi-----~~i~Ap~--EAdaq~A~L~~~g~v~~V~ 125 (342)
|+..+++-+.+.|...|+ .++..|| |-=-.+..|++.|..|+|+
T Consensus 24 I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 74 (158)
T 1di0_A 24 IVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIV 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 456778888999999885 5778899 8778888899988888887
No 64
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.90 E-value=37 Score=21.96 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 250 ~pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
.+|.+.|..++ ++||+++++..+|+.
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 7 GVNQQQLQQLM--DMGFTREHAMEALLN 32 (47)
T ss_dssp SSCHHHHHHHH--HHHCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 46888887776 699999988887764
No 65
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=33.57 E-value=41 Score=28.03 Aligned_cols=44 Identities=32% Similarity=0.338 Sum_probs=35.5
Q ss_pred cCHhHHHHHHHHHHHcCC----CeecCcC--cHHHHHHHHHHcCCeEEEe
Q 019386 82 VTKQHNDDCKRLLKLMGV----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi----~~i~Ap~--EAdaq~A~L~~~g~v~~V~ 125 (342)
|+..+++-+.+.|...|+ .++..|| |-=-.+..|++.|..|+|+
T Consensus 27 I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (156)
T 1c2y_A 27 VTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIV 76 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 446778889999999986 4788899 7767788888888888877
No 66
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.55 E-value=49 Score=22.86 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 250 ~pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
.+|.+.|..++ ++||+++++..+|+.
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (63)
T 2dak_A 7 GPPEDCVTTIV--SMGFSRDQALKALRA 32 (63)
T ss_dssp CCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 57888887776 699999988888764
No 67
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=32.75 E-value=54 Score=26.93 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCeecCc----------CcHHHHHH----HHHHcCCeEEEecCCCCccccc
Q 019386 87 NDDCKRLLKLMGVPVVEAP----------SEAEAQCA----ALCKSGQVYAVASEDMDSLTFG 135 (342)
Q Consensus 87 ~~~~~~lL~~~Gi~~i~Ap----------~EAdaq~A----~L~~~g~v~~V~S~DsD~l~fg 135 (342)
...+++.|+..|+.++.-| +.+|-.+| .++..--+.+++|+|+|+.-..
T Consensus 63 ~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv 125 (165)
T 2qip_A 63 QRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLV 125 (165)
T ss_dssp HHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH
T ss_pred HHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHH
Confidence 3456778889999766444 34554333 2233334667899999998653
No 68
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=32.39 E-value=45 Score=27.53 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHcC
Q 019386 187 IRGIGGQTALKLIRQHG 203 (342)
Q Consensus 187 IpGiG~ktA~~Li~~~~ 203 (342)
|.|||..+|..++++.+
T Consensus 35 I~GIG~~~A~~I~~~~g 51 (146)
T 3u5c_S 35 IKGVGRRYSNLVCKKAD 51 (146)
T ss_dssp STTCCHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHcC
Confidence 67999999999999865
No 69
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=32.24 E-value=20 Score=30.98 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=13.4
Q ss_pred CCCCccHHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ 201 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~ 201 (342)
.+|||||+||--++.-
T Consensus 121 ~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 121 NIKGIGMQEASHFLRN 136 (207)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH
Confidence 6899999999887753
No 70
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=32.16 E-value=20 Score=31.11 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.9
Q ss_pred CCCCccHHHHHHHHHHc
Q 019386 186 SIRGIGGQTALKLIRQH 202 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~ 202 (342)
.+||||+|+|.+++.++
T Consensus 112 ~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 112 KLPGIGKKTAERLIVEM 128 (203)
T ss_dssp TSTTCCHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHH
Confidence 68999999999998764
No 71
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=32.01 E-value=26 Score=29.30 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=35.6
Q ss_pred cCHhHHHHHHHHHHHcCC-----CeecCcC--cHHHHHHHHHHcCCeEEEe
Q 019386 82 VTKQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi-----~~i~Ap~--EAdaq~A~L~~~g~v~~V~ 125 (342)
|+..+++-+.+.|...|+ .++..|| |-=-.+..|++.|..|+|+
T Consensus 25 I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 75 (157)
T 2obx_A 25 IVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVL 75 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 456778888999999885 4778899 8777888888888888887
No 72
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=31.23 E-value=2e+02 Score=26.73 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=52.4
Q ss_pred HHHhCCCHHHHHHHHHHhCCCCCCCC--------------CCccHHHHHHHHHHcC-----CHHHHHHHHHhhcCCCCCC
Q 019386 162 LEELNLTMDQFIDLCILSGCDYCDSI--------------RGIGGQTALKLIRQHG-----SIETILENINRERYQIPED 222 (342)
Q Consensus 162 ~~~lgl~~~q~id~~~L~G~Dy~~~I--------------pGiG~ktA~~Li~~~~-----sle~il~~l~~~k~~i~~~ 222 (342)
+..+|++++++..+...-- +| -|+-+....++|+++| +++.+-.++.-.+. -+
T Consensus 53 L~d~Gfs~~~i~~il~~~P-----~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~---lG 124 (335)
T 4fp9_B 53 LLDMGFSNAHINELLSVRR-----GASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQK---LG 124 (335)
T ss_dssp HHHTTCCHHHHHHHHHHCS-----SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHH---TT
T ss_pred HHHCCCCHHHHHHHHHhCc-----ccchhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHH---cC
Confidence 3457899998887766532 33 1566777777887776 34444333321110 11
Q ss_pred CchHHHHH-HhCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 223 WPYQEARR-LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 223 ~~~~~~~~-~f~~p~v~~~~~~~~~~~~~pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
+...+++. +...|.+. ....-....-+.||...+||+.+.|...+.+
T Consensus 125 l~~~~i~~ll~~~P~lL--------~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r 172 (335)
T 4fp9_B 125 LGEGKLKRVLYCCPEIF--------TMRQQDINDTVRLLKEKCLFTVQQVTKILHS 172 (335)
T ss_dssp CTTTTHHHHHHHCGGGG--------TSCHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCchhh--------ccChHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 22222333 23345432 1221123444566667788888777766543
No 73
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=30.31 E-value=56 Score=32.57 Aligned_cols=32 Identities=13% Similarity=-0.001 Sum_probs=21.2
Q ss_pred HHHHHHHHHHc---CCCeecCcCcHHHHHHHHHHc
Q 019386 87 NDDCKRLLKLM---GVPVVEAPSEAEAQCAALCKS 118 (342)
Q Consensus 87 ~~~~~~lL~~~---Gi~~i~Ap~EAdaq~A~L~~~ 118 (342)
+.++.+-|+.+ |++.++.-|++.+.+..|++.
T Consensus 63 L~~L~~~L~~~~~~G~~L~v~~G~~~~vl~~L~~~ 97 (538)
T 3tvs_A 63 LQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQ 97 (538)
T ss_dssp HHHHHHHGGGSCSSSSCCEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHH
Confidence 45556666666 777777777777777777664
No 74
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=29.85 E-value=71 Score=19.39 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 251 PDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 251 pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
|+.+..+.-|+ .+||++++...+|+.
T Consensus 2 ~~~~~~i~~L~-~mGf~~~~a~~AL~~ 27 (40)
T 1z96_A 2 PGLNSKIAQLV-SMGFDPLEAAQALDA 27 (40)
T ss_dssp -CHHHHHHHHH-HTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHH-HcCCCHHHHHHHHHH
Confidence 45555555553 679999888777754
No 75
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.04 E-value=56 Score=23.55 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 019386 250 APDEEGLINFLVSENGFNSDRVTKAIEKI 278 (342)
Q Consensus 250 ~pd~e~l~~fl~~~~~f~~~rv~~~~~~l 278 (342)
.+|.+.|..++ ++||++++++++|+.-
T Consensus 7 ~~~e~~v~~L~--~MGF~~~~a~~AL~~t 33 (74)
T 2dag_A 7 GLDESVIIQLV--EMGFPMDACRKAVYYT 33 (74)
T ss_dssp SSCHHHHHHHH--HHSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHHh
Confidence 46888887776 6999999988888654
No 76
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=28.98 E-value=23 Score=30.88 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.2
Q ss_pred CCCCccHHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ 201 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~ 201 (342)
.+||||++||--++.-
T Consensus 125 ~lpGIG~kTA~~il~~ 140 (218)
T 1pu6_A 125 DQKGIGKESADAILCY 140 (218)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH
Confidence 5799999999877753
No 77
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=28.86 E-value=75 Score=26.74 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=34.2
Q ss_pred cCHhHHHHHHHHHHHcCCC-----eecCcC--cHHHHHHHHHH-----cCCeEEEe
Q 019386 82 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCK-----SGQVYAVA 125 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~-----~i~Ap~--EAdaq~A~L~~-----~g~v~~V~ 125 (342)
|+..+++-+.+.|...|+. ++..|| |-=-.+..|++ .+..|+|+
T Consensus 30 I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavI 85 (168)
T 1ejb_A 30 IIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVI 85 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEE
Confidence 4467788899999999975 667999 87777778877 56677776
No 78
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=28.84 E-value=27 Score=30.58 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=13.1
Q ss_pred CCCCccHHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ 201 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~ 201 (342)
.+||||+|||--++..
T Consensus 129 ~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 129 NIKGIGYKEASHFLRN 144 (214)
T ss_dssp HSTTCCHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHH
Confidence 6799999999776654
No 79
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=28.01 E-value=24 Score=31.05 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=13.8
Q ss_pred CCCCccHHHHHHHHHHcC
Q 019386 186 SIRGIGGQTALKLIRQHG 203 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~~ 203 (342)
.+||||++||--++..++
T Consensus 134 ~l~GVG~kTA~~vL~~~g 151 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRNTG 151 (219)
T ss_dssp HSTTCCHHHHHHHHHTTT
T ss_pred hCCCCCHHHHHHHHHHcC
Confidence 579999999977765444
No 80
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=27.94 E-value=43 Score=26.41 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHcC
Q 019386 187 IRGIGGQTALKLIRQHG 203 (342)
Q Consensus 187 IpGiG~ktA~~Li~~~~ 203 (342)
|.|||+.+|..++++.+
T Consensus 21 I~GIG~~~A~~I~~~~g 37 (114)
T 3r8n_M 21 IYGVGKTRSKAILAAAG 37 (114)
T ss_dssp STTCCHHHHHHHHHHTT
T ss_pred hcCcCHHHHHHHHHHcC
Confidence 68999999999998866
No 81
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=27.60 E-value=47 Score=31.08 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=26.6
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 019386 186 SIRGIGGQTALKLIRQHGSIETILENINR 214 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~~~sle~il~~l~~ 214 (342)
-||||.+-.|..++++|+|+-.+++.++.
T Consensus 259 qi~gVS~ekA~aI~~~YPTp~~L~~Ay~~ 287 (341)
T 2ziu_B 259 QLNRVSLEMASAVVNAYPSPQLLVQAYQQ 287 (341)
T ss_dssp TSTTCCHHHHHHHHHHSCSHHHHHHHHHT
T ss_pred HccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 37999999999999999999999998864
No 82
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.49 E-value=69 Score=22.29 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 250 ~pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
.+|.+.|..++ ++||+++++..+|+.
T Consensus 7 ~~~~~~I~~L~--~MGF~~~~a~~AL~~ 32 (63)
T 1wji_A 7 GVDEKALKHIT--EMGFSKEASRQALMD 32 (63)
T ss_dssp SSCHHHHHHHH--TTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 46777777665 799999998887754
No 83
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=27.35 E-value=36 Score=29.68 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCeec-----------CcCcHHHHHHHHHHcCC
Q 019386 88 DDCKRLLKLMGVPVVE-----------APSEAEAQCAALCKSGQ 120 (342)
Q Consensus 88 ~~~~~lL~~~Gi~~i~-----------Ap~EAdaq~A~L~~~g~ 120 (342)
..-.+.|+.+|+||-. ...|+||.+|||...|.
T Consensus 154 ~~~~~~l~~~gvpy~~~~i~~a~~~~~~~~e~~alvAYLq~Lg~ 197 (203)
T 3mk7_B 154 AKKMSALRMLGVPYTEEDIAGARDSVNGKTEMDAMVAYLQVLGT 197 (203)
T ss_dssp HHHHHHHHHTTCCCCHHHHTTSHHHHTTCBHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhcCCCCCHHHHHhHHHHhcchhHHHHHHHHHHHhCc
Confidence 3345677779999943 34599999999987664
No 84
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=26.67 E-value=27 Score=30.47 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.0
Q ss_pred CCCCccHHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIRQ 201 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~~ 201 (342)
.+||||++||--++..
T Consensus 119 ~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 119 DLPGVGKYTCAAVMCL 134 (221)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 3799999999877764
No 85
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=26.05 E-value=28 Score=30.41 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.5
Q ss_pred CCCCccHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIR 200 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~ 200 (342)
.+||||++||--++.
T Consensus 113 ~lpGIG~~TA~~il~ 127 (225)
T 1kg2_A 113 ALPGVGRSTAGAILS 127 (225)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 379999999887765
No 86
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.89 E-value=40 Score=22.17 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 251 PDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 251 pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
++.+.+..++ ++||+++++..+|+.
T Consensus 7 ~~~~~i~~L~--~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 7 EYETMLTEIM--SMGYERERVVAALRA 31 (49)
T ss_dssp HHHHHHHHHH--HTTCCHHHHHHHHHT
T ss_pred cCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 3455555554 899999998888763
No 87
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=25.80 E-value=29 Score=30.63 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=12.5
Q ss_pred CCCCccHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIR 200 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~ 200 (342)
.|||||++||--++.
T Consensus 142 ~lpGIG~kTA~~ill 156 (233)
T 2h56_A 142 AIKGIGQWTAEMFMM 156 (233)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 579999999877665
No 88
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.50 E-value=76 Score=22.73 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 249 SAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 249 ~~pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
..++.+.|..++ ++||+++++..+|+.
T Consensus 26 ~~~~~~~v~~L~--~MGF~~~~a~~AL~~ 52 (73)
T 1wiv_A 26 SDIDQSSVDTLL--SFGFAEDVARKALKA 52 (73)
T ss_dssp CSSCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 358888887775 799999998888764
No 89
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.28 E-value=73 Score=23.62 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 249 SAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 249 ~~pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
..|+.+.|..++ ++||++++++.+|+.
T Consensus 26 ~~~~ee~I~~Lv--~MGF~~~~A~~AL~~ 52 (83)
T 1veg_A 26 ASPSQESINQLV--YMGFDTVVAEAALRV 52 (83)
T ss_dssp CCCCHHHHHHHH--HHSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 356778887775 799999999888864
No 90
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=25.23 E-value=1e+02 Score=21.77 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHHHHHHhhhccc-cCHhHHHHHHHHHHHcCCCeecC
Q 019386 69 KEDIEKFSKRTVK-VTKQHNDDCKRLLKLMGVPVVEA 104 (342)
Q Consensus 69 ~~~~~k~~~r~~~-vt~~~~~~~~~lL~~~Gi~~i~A 104 (342)
.+++..+...... ++.++++.+...|..+||.++..
T Consensus 26 y~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~Vvd~ 62 (72)
T 2k6x_A 26 YEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVEN 62 (72)
T ss_dssp HHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCC
T ss_pred HHHHHHhCccccccCCHHHHHHHHHHHHHCCCccccC
Confidence 4455444333222 67889999999999999988753
No 91
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.21 E-value=35 Score=23.91 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 019386 249 SAPDEEGLINFLVSENGFNSDRVTKAIEKI 278 (342)
Q Consensus 249 ~~pd~e~l~~fl~~~~~f~~~rv~~~~~~l 278 (342)
..||.+.|..++ ++||+++++.++|..-
T Consensus 6 ~~~~e~~v~~L~--~MGF~~~~a~~AL~~t 33 (64)
T 2crn_A 6 SGSSPSLLEPLL--AMGFPVHTALKALAAT 33 (64)
T ss_dssp CCCSCSSHHHHH--HTSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHHh
Confidence 356766676665 6999999988888643
No 92
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=23.44 E-value=34 Score=30.00 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=12.4
Q ss_pred CCCCccHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIR 200 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~ 200 (342)
.+||||++||--++.
T Consensus 117 ~lpGIG~~TA~~il~ 131 (226)
T 1orn_A 117 KLPGVGRKTANVVVS 131 (226)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred HCCCccHHHHHHHHH
Confidence 379999999887765
No 93
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=23.17 E-value=33 Score=29.59 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=12.0
Q ss_pred CCCccHHHHHHHHH
Q 019386 187 IRGIGGQTALKLIR 200 (342)
Q Consensus 187 IpGiG~ktA~~Li~ 200 (342)
+||||++||--++.
T Consensus 114 l~GIG~~tA~~il~ 127 (211)
T 2abk_A 114 LPGVGRKTANVVLN 127 (211)
T ss_dssp STTCCHHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 79999999877765
No 94
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=22.74 E-value=54 Score=29.95 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=58.4
Q ss_pred eHHHHHHHhCCCHHH-------HHHHHHHhCCCCC-------CC--------------------CCCccHHHHHHHHHHc
Q 019386 157 EVAKILEELNLTMDQ-------FIDLCILSGCDYC-------DS--------------------IRGIGGQTALKLIRQH 202 (342)
Q Consensus 157 ~~~~v~~~lgl~~~q-------~id~~~L~G~Dy~-------~~--------------------IpGiG~ktA~~Li~~~ 202 (342)
++..+..+.|++|+. |-.++.++.+|.- .| -.|+|-|||-.|++.|
T Consensus 352 tlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllraf 431 (519)
T 2csb_A 352 TLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAF 431 (519)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHcccccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHh
Confidence 455677788998743 3345666666632 11 1499999999999999
Q ss_pred CCHHHHHHHHHhh---cCCCCCCCchHHHHHHhCCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCC
Q 019386 203 GSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 267 (342)
Q Consensus 203 ~sle~il~~l~~~---k~~i~~~~~~~~~~~~f~~p~v~~~~~~~~~~~~~pd~e~l~~fl~~~~~f~ 267 (342)
|+.+.+-+-.... +..--+..- ..+. +..|+--.. -++....|.+....++.+.-|++
T Consensus 432 gnpervkqlarefeieklasvegvg-ervl----rslvpgyas--lisirgidreraerllkkyggys 492 (519)
T 2csb_A 432 GNPERVKQLAREFEIEKLASVEGVG-ERVL----RSLVPGYAS--LISIRGIDRERAERLLKKYGGYS 492 (519)
T ss_dssp SSHHHHHHHHHTTCHHHHHTSTTCS-HHHH----HHHSTTHHH--HHTSTTCCHHHHHHHHHHHTSHH
T ss_pred CCHHHHHHHHHHHhHHHHhhccchH-HHHH----HHhccchhh--heeeccccHHHHHHHHHHhCChh
Confidence 9999875543311 000001110 1111 111111011 24567789888888885555664
No 95
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=22.09 E-value=38 Score=29.81 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.4
Q ss_pred CCCCccHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIR 200 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~ 200 (342)
.|||||++||--++.
T Consensus 143 ~l~GIG~~TA~~ill 157 (228)
T 3s6i_A 143 QIKGIGRWTVEMLLI 157 (228)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999877664
No 96
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=22.01 E-value=1e+02 Score=27.18 Aligned_cols=108 Identities=14% Similarity=0.253 Sum_probs=56.2
Q ss_pred HHHHHhCCCHHHHHHHH----HHhCCCCCCCC---------CCccHHHHHHHHHHcC-----CHHHHHHHHHhhcCCCCC
Q 019386 160 KILEELNLTMDQFIDLC----ILSGCDYCDSI---------RGIGGQTALKLIRQHG-----SIETILENINRERYQIPE 221 (342)
Q Consensus 160 ~v~~~lgl~~~q~id~~----~L~G~Dy~~~I---------pGiG~ktA~~Li~~~~-----sle~il~~l~~~k~~i~~ 221 (342)
+++..+|++++++..+. .++++|... + -|+......+++..++ +++++..+++-.... -
T Consensus 46 ~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~--l 122 (270)
T 3m66_A 46 LFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKE--L 122 (270)
T ss_dssp HHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHH--H
T ss_pred HHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHH--h
Confidence 44556778777766653 233434332 2 1555666667777665 345544444322100 1
Q ss_pred CCchHHHHHHh-CCCCcCCccccccCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 019386 222 DWPYQEARRLF-KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 278 (342)
Q Consensus 222 ~~~~~~~~~~f-~~p~v~~~~~~~~~~~~~pd~e~l~~fl~~~~~f~~~rv~~~~~~l 278 (342)
.++..++..+. .+|.+... .. -....-.+|+..++||+.+.|...+.+.
T Consensus 123 G~~~~~i~~ll~~~P~il~~-s~-------e~~~~~v~~l~~~~G~s~~ei~~~v~~~ 172 (270)
T 3m66_A 123 ELSVKKTRDLVVRLPRLLTG-SL-------EPVKENMKVYRLELGFKHNEIQHMITRI 172 (270)
T ss_dssp CCCHHHHHHHHHHSGGGGTS-CS-------HHHHHHHHHHHHTSCCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhCCcceee-ch-------HHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 23344555544 45655311 11 0123444555578999988888777664
No 97
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=21.99 E-value=1.2e+02 Score=24.12 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=33.7
Q ss_pred ccCHhHHHHHHHHHH-HcCCCeecCc-CcHHHHHHHHHHcCCeEEEecCCCCccc--cc
Q 019386 81 KVTKQHNDDCKRLLK-LMGVPVVEAP-SEAEAQCAALCKSGQVYAVASEDMDSLT--FG 135 (342)
Q Consensus 81 ~vt~~~~~~~~~lL~-~~Gi~~i~Ap-~EAdaq~A~L~~~g~v~~V~S~DsD~l~--fg 135 (342)
.++.+......++.. ..+- .+ .-+|+.++..+...-+ .++|.|.|+-. +|
T Consensus 77 ~~~~~~~~~A~~l~~~~~~~----~~l~~~Dali~A~A~~~g~-~l~T~D~dF~~~~~g 130 (156)
T 1w8i_A 77 YTDDEVERKALEVFKARVYE----KGFSYTDAISEVVAEELKL-KLISYDSRFSLPTIG 130 (156)
T ss_dssp CCCHHHHHHHHHHHHHTTTS----TTCCHHHHHHHHHHHHHTC-EEECSCTTCSSCEEC
T ss_pred eCCHHHHHHHHHHHHHHhcc----CCCCHhHHHHHHHHHHcCC-EEEEeCcccCcccCC
Confidence 456666666666665 4431 22 3689999998875334 68999999987 74
No 98
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=21.40 E-value=39 Score=30.86 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.4
Q ss_pred CCCCccHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIR 200 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~ 200 (342)
.+|||||+||--++.
T Consensus 215 ~lpGIG~~TA~~ill 229 (290)
T 3i0w_A 215 KFMGVGPQVADCIML 229 (290)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999977664
No 99
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=21.21 E-value=40 Score=29.52 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=12.1
Q ss_pred CCCCccHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIR 200 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~ 200 (342)
.|||||++||--++.
T Consensus 150 ~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 150 QLPGIGRWTAEMFLL 164 (225)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 479999999877664
No 100
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=21.14 E-value=2.1e+02 Score=27.94 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCCCeecC-----cC--cHHHHHHHHHH-cCCe
Q 019386 85 QHNDDCKRLLKLMGVPVVEA-----PS--EAEAQCAALCK-SGQV 121 (342)
Q Consensus 85 ~~~~~~~~lL~~~Gi~~i~A-----p~--EAdaq~A~L~~-~g~v 121 (342)
+..+.+.++++..|+.-|.. |+ +-|..+..++. .|+.
T Consensus 88 ~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~ 132 (509)
T 1u3d_A 88 DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIA 132 (509)
T ss_dssp CHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcE
Confidence 44567788888888887754 33 33445555544 4553
No 101
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.12 E-value=53 Score=22.87 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 250 ~pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
.+|.+.|..++ ++||+++++..+|+.
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (64)
T 1whc_A 7 GAELTALESLI--EMGFPRGRAEKALAL 32 (64)
T ss_dssp CCCCCHHHHHH--TTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 45666777775 799999998888764
No 102
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=20.77 E-value=1e+02 Score=22.73 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 250 ~pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
.+|.+.|..++ .+||+++++.++|..
T Consensus 27 ~~~e~~v~~L~--~MGF~~~~a~~AL~~ 52 (84)
T 1vek_A 27 VANEEIVAQLV--SMGFSQLHCQKAAIN 52 (84)
T ss_dssp CCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 56888887776 699999998888764
No 103
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=20.56 E-value=42 Score=29.61 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=12.2
Q ss_pred CCCCccHHHHHHHHH
Q 019386 186 SIRGIGGQTALKLIR 200 (342)
Q Consensus 186 ~IpGiG~ktA~~Li~ 200 (342)
.|||||++||--++.
T Consensus 154 ~l~GIG~~TA~~ill 168 (232)
T 4b21_A 154 KIKGVKRWTIEMYSI 168 (232)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999877664
No 104
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.46 E-value=1e+02 Score=22.69 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 019386 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (342)
Q Consensus 250 ~pd~e~l~~fl~~~~~f~~~rv~~~~~~ 277 (342)
.+|.+.|..++ ++||+++++.++|..
T Consensus 27 ~~~e~~i~~L~--~MGF~~~~a~~AL~~ 52 (83)
T 2dai_A 27 RVDEAALRQLT--EMGFPENRATKALQL 52 (83)
T ss_dssp SCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 47888887776 699999998888764
No 105
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=20.41 E-value=81 Score=26.22 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=34.1
Q ss_pred cCHhHHHHHHHHHHHcC--CCeecCcC--cHHHHHHHHHHc-----CCeEEEe
Q 019386 82 VTKQHNDDCKRLLKLMG--VPVVEAPS--EAEAQCAALCKS-----GQVYAVA 125 (342)
Q Consensus 82 vt~~~~~~~~~lL~~~G--i~~i~Ap~--EAdaq~A~L~~~-----g~v~~V~ 125 (342)
|+..+++-+.+.|...| |.++..|| |-=-.+..|++. +..|+|+
T Consensus 26 I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavI 78 (157)
T 2i0f_A 26 LADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFV 78 (157)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEE
Confidence 44667788888888888 45677898 877788888877 7777776
Done!