BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019387
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 144/272 (52%), Gaps = 25/272 (9%)
Query: 33 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
++E + VE+ +K I +I+ + D ++ L+E + +F + + +N
Sbjct: 18 MLEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVAN 73
Query: 93 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD- 151
AVGY+N+D+ A K GI V NTP V R +V+ D F+R+G +
Sbjct: 74 YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKK 133
Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
W P F+G + G+T+G+IG GRIG A A+ +GF M ++YY + +E+ +
Sbjct: 134 RGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNMRILYYSRTRKEEVERELN 192
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
A +F ++++LRE+D + L L + TYHLIN+ERL MKK AIL
Sbjct: 193 A--EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
+N +RG V+D ALV+ LK+ + GLDVFE
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFE 268
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 141/271 (52%), Gaps = 25/271 (9%)
Query: 34 IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93
+E + VE+ +K I +I+ + D ++ L+E + +F + + +N
Sbjct: 19 LEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTXLSERIDKEVFENAPKL--RIVANY 74
Query: 94 AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 151
AVGY+N+D+ A K GI V NTP V R +V+ D F+R+G +
Sbjct: 75 AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 152 --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
W P F+G + G+T+G+IG GRIG A A+ +GF ++YY + +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNXRILYYSRTRKEEVERELNA 193
Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
+F ++++LRE+D + L L + TYHLIN+ERL KK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
N +RG V+D ALV+ LK+ + GLDVFE
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFE 268
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 114/213 (53%), Gaps = 20/213 (9%)
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
K + VG +N+DV AA + GI V N P R+I AD MR
Sbjct: 68 KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE 127
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
G+ W +G L+G+T+G+IG GRIG A++ MN++ YD Y K V
Sbjct: 128 GV---WAKKEAMGIELEGKTIGIIGFGRIGYQVAKI-ANALGMNILLYDPYPNEERAKEV 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
G+F+ ++ +L+E+DV+++H L ++TYHLIN+ERL MKK AI
Sbjct: 184 N--GKFV--------------DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
L+N SRGPV+D ALV+ LK+ + GLDVFE
Sbjct: 228 LINTSRGPVVDTNALVKALKEGWIAGAGLDVFE 260
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 31/283 (10%)
Query: 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
RV+ T+ +PG + ++ L E+ VE+ + L +++ + +G +G +
Sbjct: 2 RVLVTRTLPG-KALDRLRERGLEVEV--HRGLFLPKAELL----KRVEGAVGLIPTVEDR 54
Query: 77 TLFAALSRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
+ RA G K + +VG ++VD+ AA + GI V +TPGV
Sbjct: 55 IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
RR+VE + R GL+ W P L +G L+G T+G++G GRIG A A+ + F M ++Y+
Sbjct: 115 RRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRAL-AFGMRVVYH 173
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
A +P+ + S++E+L+EADV+SLH L T+ L+N
Sbjct: 174 --------------------ARTPKPLPYP-FLSLEELLKEADVVSLHTPLTPETHRLLN 212
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
+ERL MK+ AIL+N +RG ++D ALVE L+ + +F GLDV
Sbjct: 213 RERLFAMKRGAILLNTARGALVDTEALVEALRGH-LFGAGLDV 254
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 24/266 (9%)
Query: 36 QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95
+D ++ + L + +AL DGV+ D+ AL+ G S V
Sbjct: 21 EDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV 79
Query: 96 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWL 154
G +N+D+ A + G + N P R+ DE + +D W
Sbjct: 80 GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRWA 137
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
P +G ++ Q VGV+G G IG + ++M EGF +I YD+++ LEK G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYYV 190
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
S+D++ ++ADVISLH H+IN E +A MK++ ++VN SRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFE 300
P++D A++ L +F +DV+E
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYE 263
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 24/266 (9%)
Query: 36 QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95
+D ++ + L + +AL DGV+ D+ AL+ G S V
Sbjct: 21 EDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV 79
Query: 96 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWL 154
G +N+D+ A + G + N P R+ DE + +D W
Sbjct: 80 GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRWA 137
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
P +G ++ Q VGV+G G IG + ++M EGF +I YD+++ LEK G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYYV 190
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
S+D++ ++ADVISLH H+IN E +A MK++ ++VN SRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFE 300
P++D A++ L +F +DV+E
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYE 263
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 111/238 (46%), Gaps = 21/238 (8%)
Query: 63 CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
DGV+ D+ AL+ AG S VG +N+D++ A + G + N P
Sbjct: 47 ADGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
R+ DE M A W P +G ++ Q VGV+G G IG + R
Sbjct: 107 IAEHAAIQAARVLRQDKRMDEKM-AKRDLRWAPT--IGREVRDQVVGVVGTGHIGQVFMR 163
Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
+M EGF +I YD+++ LEK G ++ S+D++ ++ADVISL
Sbjct: 164 IM-EGFGAKVIAYDIFKNPELEK----KGYYV-------------DSLDDLYKQADVISL 205
Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
H H+IN + +A MK ++VNCSRG ++D A++ L +F +D +E
Sbjct: 206 HVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYE 263
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 43/303 (14%)
Query: 23 PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
PM + LL +DC VE+ IL +A CD Q L E G
Sbjct: 20 PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77 TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
++ L+R + F + + G++N+D+ +A GIAV N P
Sbjct: 71 LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
RR + +R G + + ++G+T+G+IG GR+G A A +
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
+ F N+++YD Y + +E+ A G +R S++ ++L +D ++LH
Sbjct: 190 AKAFGFNVLFYDPYLSDGIER---ALG------------LQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTEL 304
L++ +HLIN + M++ A LVN +RG ++DE AL + LK+ + LDV E
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 305 GFS 307
FS
Sbjct: 295 SFS 297
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 86 GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFM 145
G K + ++VGY+++D AA GI V +TP V RR EAD +
Sbjct: 94 GLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXV 153
Query: 146 RAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205
R+G + GW P +G L G+ +G+ G GRIG A A GF + + Y++ TRL
Sbjct: 154 RSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIA-TRARGFGLAIHYHN---RTRLSH 209
Query: 206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE 265
+ E+ + ++D +L +D+ + ++ +R+A + +
Sbjct: 210 AL-----------EEGAIYH--DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256
Query: 266 AILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
A+++N SRG +I++ AL+E L+ +F GLDVF
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVF 290
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 20/216 (9%)
Query: 96 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
G++N+D+ +A GIAV N P RR + +R G +
Sbjct: 95 GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVE 154
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
+ ++G+T+G+IG GR+G A A + + F N+++YD Y
Sbjct: 155 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 200
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
L E+ + +R S++ ++L +D ++LH L++ +HLIN + M++ A LVN
Sbjct: 201 --LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 258
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFS 307
+RG ++DE AL + LK+ + LDV E FS
Sbjct: 259 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 294
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 20/216 (9%)
Query: 96 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
G++N+D+ +A GIAV N P RR + +R G +
Sbjct: 98 GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
+ ++G+T+G+IG GR+G A A + + F N+++YD Y + +E+ A G
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPYLSDGIER---ALG 213
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
+R S++ ++L +D ++LH L++ +HLIN + M++ A LVN
Sbjct: 214 ------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFS 307
+RG ++DE AL + LK+ + LDV E FS
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 26/254 (10%)
Query: 51 SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGI 110
S E++ +IG + DG+I T + R K S + GY+N+D+ A K GI
Sbjct: 32 SGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHSAGYDNIDLEEATKRGI 88
Query: 111 AVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQ 166
V G+ R+I AD+F+R G ++ ++ G L G+
Sbjct: 89 YVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH-AKIWTGFKRIESLYGK 147
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
VG++G G IG A AR ++ F + L Y+ ++ +EK + A R
Sbjct: 148 KVGILGMGAIGKAIARRLIP-FGVKLYYWSRHRKVNVEKELKA----------------R 190
Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
+DE+L ++D++ L L + TYH+IN+ER+ ++ + LVN RG ++DE A+ E +
Sbjct: 191 YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAI 249
Query: 287 KQNPMFRVGLDVFE 300
KQ + DVFE
Sbjct: 250 KQGKLKGYATDVFE 263
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 76 ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
E ++ LS G K VG+N ++ + KY + V N P
Sbjct: 60 EVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLL 119
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
R+I E M W NL + N + TVG+IG G IGSA A + +I Y
Sbjct: 120 RKIGEFRYRMDHDHDFTWPSNL-ISNEIYNLTVGLIGVGHIGSAVAEIF-SAMGAKVIAY 177
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
D+ E F+T Y F D VL+EAD++SLH L +T ++I
Sbjct: 178 DVAYNPEFEPFLT-YTDF-----------------DTVLKEADIVSLHTPLFPSTENMIG 219
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
+++L MKK A L+NC+RG ++D AL++ L+ + GLD
Sbjct: 220 EKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTL 263
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 134/303 (44%), Gaps = 43/303 (14%)
Query: 23 PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
PM + LL +DC VE+ IL +A CD Q L E G
Sbjct: 20 PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77 TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
++ L+R + F + + G++N+D+ +A GIAV N P
Sbjct: 71 LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
RR + +R G + + ++G+T+G+IG R+G A A +
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
+ F N+++YD Y + +E+ A G +R S++ ++L +D ++LH
Sbjct: 190 AKAFGFNVLFYDPYLSDGIER---ALG------------LQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTEL 304
L++ +HLIN + M++ A LVN +RG ++DE AL + LK+ + LDV E
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 305 GFS 307
FS
Sbjct: 295 SFS 297
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 135/306 (44%), Gaps = 46/306 (15%)
Query: 20 STKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTED 73
S P P + LL +DC VE+ IL +A CD Q L E
Sbjct: 1 SMHPRP---LVALLDGRDCTVEM-----PILKDLATVAF----CDAQSTQEIHEKVLNEA 48
Query: 74 WGETLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXX 125
G ++ L+R + F + V GY+NVD+ AA + GIAV N P
Sbjct: 49 VGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETAD 108
Query: 126 XXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYA 181
RR + +R G + + ++G+T+G+IG GR G A A
Sbjct: 109 STICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVA 168
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
+ + F ++I+YD Y L+ E+ + +R ++ ++L ++D +S
Sbjct: 169 -VRAKAFGFSVIFYDPY---------------LQDGIERSLGVQRVYTLQDLLYQSDCVS 212
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
LH L++ +HLIN + M++ A LVN +RG ++DE AL + LK+ + LDV E
Sbjct: 213 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 272
Query: 302 TELGFS 307
F+
Sbjct: 273 EPFSFA 278
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 29/265 (10%)
Query: 36 QDCRVEICTQKKTILSVEDIIALIGDKC-DGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94
D ++ I +T SV+ ++ + +KC VI ++ E+ K S +
Sbjct: 29 DDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENI-------------KCISTYS 75
Query: 95 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
+G++++D++A GI VGN P RR E ++ +R + GW
Sbjct: 76 IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE 135
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
P VG L +T+G+ G G IG A A+ +GF M++ Y+D ++A+
Sbjct: 136 PLELVGEKLDNKTLGIYGFGSIGQALAKR-AQGFDMDIDYFDTHRAS------------- 181
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
++ E S+D +L + SL+ T + NK + ++ + AI+VN +RG
Sbjct: 182 -SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF 299
++D +V L+ + G DVF
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVF 265
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 110/233 (47%), Gaps = 28/233 (12%)
Query: 69 QLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
QLTE+ +FAA +R A +VG N V++ AA K GI V N P
Sbjct: 69 QLTEE----IFAAANRL--IAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVI 122
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
RRI AG GW ++G+T+G++G G IGS + E
Sbjct: 123 GEIIMLMRRIFPRSVSAHAG---GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNL-AESL 178
Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
M + YYD + +L+ YG K A+S+DE+L+ +DV+SLH K
Sbjct: 179 GMTVRYYD--TSDKLQ-----YGNV-----------KPAASLDELLKTSDVVSLHVPSSK 220
Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
+T LI + +L MKK A L+N +RG +D AL + L++ + +DVF V
Sbjct: 221 STSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPV 273
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 24/255 (9%)
Query: 64 DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXX 123
DG+ T + +F + G K + VG +N+D+ A +YGI + N P
Sbjct: 46 DGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAI 105
Query: 124 XXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
R + + ++AG Y+ F+G L QTVGV+G G IG A
Sbjct: 106 AEFALTDTLYLLRNMGKVQAQLQAGDYEK--AGTFIGKELGQQTVGVMGTGHIGQV-AIK 162
Query: 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243
+ +GF +I YD Y G+ P S++++ +++DVI LH
Sbjct: 163 LFKGFGAKVIAYDPY----------------PMKGDHPDF--DYVSLEDLFKQSDVIDLH 204
Query: 244 -PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV- 301
P +++ T H+IN+ MK AI++N +R +ID A++ +LK + VG+D +E
Sbjct: 205 VPGIEQNT-HIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE 263
Query: 302 TELGFSSFKHISTQD 316
TE + KH S +D
Sbjct: 264 TEDLLNLAKHGSFKD 278
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
K F+ G++ +D++A N+ G+A N+ G R ++ R
Sbjct: 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
G + + +L +G +G +G +G G I AR V G M L+YYD+ A
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
A E+ + +R S++E+ R +D +S+ K T+HLI++ A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
+ +VN +RGPVI + AL+ LK + GLDV E
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
K F+ G++ +D++A N+ G+A N+ G R ++ R
Sbjct: 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
G + + +L +G +G +G +G G I AR V G M L+YYD+ A
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
A E+ + +R S++E+ R +D +S+ K T+HLI++ A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
+ +VN +RGPVI + AL+ LK + GLDV E
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
K F+ G++ +D++A N+ G+A N+ G R ++ R
Sbjct: 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
G + + +L +G +G +G +G G I AR V G M L+YYD+ A
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
A E+ + +R S++E+ R +D +S+ K T+HLI++ A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
+ +VN +RGPVI + AL+ LK + GLDV E
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
K + VG +NVDV+AA G+ V N P R+I AD +R
Sbjct: 67 KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 125
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
W + F G + G+TVGV+G GRIG A+ + F ++ YD Y
Sbjct: 126 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 173
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
V+ RA+ S+D++L AD IS+H T LI+KE LA
Sbjct: 174 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 219
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
K I+VN +RG ++DE AL + + + GLDVF
Sbjct: 220 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 258
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
K + VG +NVDV+AA G+ V N P R+I AD +R
Sbjct: 68 KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 126
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
W + F G + G+TVGV+G GRIG A+ + F ++ YD Y
Sbjct: 127 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 174
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
V+ RA+ S+D++L AD IS+H T LI+KE LA
Sbjct: 175 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 220
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
K I+VN +RG ++DE AL + + + GLDVF
Sbjct: 221 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 259
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 113/254 (44%), Gaps = 23/254 (9%)
Query: 46 KKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAA 105
+K LS E++IA + D C+G+I + + A + + G +NVD+ AA
Sbjct: 52 EKQNLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--QVVGRAGTGVDNVDLEAA 108
Query: 106 NKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
+ GI V NTP R+I +A M+ G W F+G L G
Sbjct: 109 TRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWERKKFMGTELNG 165
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
+T+G++G GRIG A M + F M I YD + + ++G
Sbjct: 166 KTLGILGLGRIGREVATRM-QSFGMKTIGYDPIISPEVS---ASFG-------------V 208
Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
+ ++E+ D I++H L +T L+N A KK +VNC+RG ++DE AL+
Sbjct: 209 QQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRA 268
Query: 286 LKQNPMFRVGLDVF 299
L+ LDVF
Sbjct: 269 LQSGQCAGAALDVF 282
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 123/282 (43%), Gaps = 19/282 (6%)
Query: 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
+V T+ +P + L DC VE + I + E + G G++ L++ +
Sbjct: 10 KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 67
Query: 77 TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
+ A + A K S M+VG +++ ++ K GI VG TP V R
Sbjct: 68 RILDA-AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 126
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
R+ EA E ++ G + W P G L TVG+IG GRIG A AR + + F + Y
Sbjct: 127 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 185
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
Q R E+ +F+ S E+ ++D I + L T L NK
Sbjct: 186 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 230
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
+ MK+ A+ +N SRG V+++ L + L + GLDV
Sbjct: 231 DFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDV 272
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%)
Query: 96 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
G++N DV+A G+ + P + R + AD F+R+G + GW P
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
F G L TVG +G G IG A A + +G+ L Y++ + L
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN RG
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEVTE 303
V+DE A++ L++ + DVFE+ +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMED 267
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%)
Query: 96 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
G++N DV+A G+ + P + R + AD F+R+G + GW P
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
F G L TVG +G G IG A A + +G+ L Y++ + L
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN RG
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEVTE 303
V+DE A++ L++ + DVFE+ +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMED 267
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 109/247 (44%), Gaps = 24/247 (9%)
Query: 54 DIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVG 113
D +AL + V+G L AL + + S+ +VG + VD+ + G+ V
Sbjct: 57 DFLALQAESIRAVVGNSNAGADAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVT 114
Query: 114 NTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
NTP V RRI E D+++R G + + + G+ VG+IG
Sbjct: 115 NTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK--FGDFKLTTKFSGKRVGIIGL 172
Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
GRIG A A E F + Y+ +R +K T Y + S+ E+
Sbjct: 173 GRIGLAVAER-AEAFDCPISYF-----SRSKKPNTNYTYY--------------GSVVEL 212
Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
+D++ + L T H+IN+E + + + +L+N RGP +DE LV L + +
Sbjct: 213 ASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272
Query: 294 VGLDVFE 300
GLDVFE
Sbjct: 273 AGLDVFE 279
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 17/205 (8%)
Query: 96 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
G++N DV+A G+ + P + R + AD F+R+G + GW P
Sbjct: 78 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
F G L TVG +G G IG A A + +G+ L Y+ + L
Sbjct: 138 R-FYGTGLDNATVGFLGXGAIGLAXADRL-QGWGATLQYH--------------AAKALD 181
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN RG
Sbjct: 182 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 240
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFE 300
V+DE A++ L++ + DVFE
Sbjct: 241 VVDEAAVLAALERGQLGGYAADVFE 265
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
K +VG++++D++ K GI V + P +R+ ++ R
Sbjct: 66 KLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIED--RV 123
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
+ + + L T+GVIG GRIGS A + F ++ YD+ + L++
Sbjct: 124 KKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGL-AFGXKVLCYDVVKREDLKEKG 182
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
Y +S+DE+L+E+DVISLH K T+H IN+ER++ K
Sbjct: 183 CVY-----------------TSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVY 225
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTEL 304
L+N +RG V+D AL ++ +GLDVFE E+
Sbjct: 226 LINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEI 262
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 96 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
G++N DV+A G+ + P + R + AD F+R+G + GW P
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
F G L TVG +G G IG A A + +G+ L Y+ + L
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN RG
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEVTE 303
V+DE A++ L++ + DVFE+ +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMED 267
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 96 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
G++N DV+A G+ + P + R + AD F+R+G + GW P
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
F G L TVG +G G IG A A + +G+ L Y+ + L
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN RG
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEVTE 303
V+DE A++ L++ + DVFE+ +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMED 267
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 121/282 (42%), Gaps = 19/282 (6%)
Query: 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
+V T+ +P + L DC VE + I + E + G G++ L++ +
Sbjct: 8 KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 65
Query: 77 TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
+ A + A K S +VG +++ ++ K GI VG TP V R
Sbjct: 66 RILDA-AGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 124
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
R+ EA E ++ G + W P G L TVG+IG GRIG A AR + + F + Y
Sbjct: 125 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 183
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
Q R E+ +F+ S E+ ++D I + L T L NK
Sbjct: 184 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 228
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
+ K+ A+ +N SRG V+++ L + L + GLDV
Sbjct: 229 DFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDV 270
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 100/219 (45%), Gaps = 22/219 (10%)
Query: 95 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
VG + VD+ A + I V TPGV RR+ + D +R G +
Sbjct: 102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG- 160
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
L +G+ KG+ +GV+G G+IG A A E F ++ Y++ T G
Sbjct: 161 EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGXSVRYWNRS---------TLSG--- 207
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
V W S ++ R++DV+++ T ++++ L + E I+VN +RG
Sbjct: 208 -------VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHIS 313
V+DE AL+E LK + GLDVF V E S H +
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVF-VNEPAIRSEFHTT 298
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 22/212 (10%)
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
K + +G +N+D A K I V PG R++ + ++
Sbjct: 70 KIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKS 129
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
G++ G L G+T+G++G GRIG+ ++ M ++ YD+ + +
Sbjct: 130 GIFKK-----IEGLELAGKTIGIVGFGRIGTKVG-IIANAMGMKVLAYDILDIREKAEKI 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
A +A S++E+L+ +DVISLH + K +I+ + MK I
Sbjct: 184 NA----------------KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
+VN SR ++ AL++++K+ ++ DVF
Sbjct: 228 IVNTSRAVAVNGKALLDYIKKGKVYAYATDVF 259
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
A A+G N VD++AA K GI V N P R + EA+ G
Sbjct: 78 AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
+++ F +G+ +G+IG G IG+ ++ E M + +YD+ L
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
N Q + ++L +DV+SLH + +T +++ + ++ MK ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
+N SRG V+D AL + L + +DVF
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVF 266
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
A A+G N VD++AA K GI V N P R + EA+ G
Sbjct: 78 AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
+++ F +G+ +G+IG G IG+ ++ E M + +YD+ L
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
N Q + ++L +DV+SLH + +T +++ + ++ MK ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
+N SRG V+D AL + L + +DVF
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVF 266
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 95 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
+G N VD++AA K GI V N P R + EA+ G+++
Sbjct: 83 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 142
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
F +G+ +G+IG G IG+ ++ E M + +YD+ L
Sbjct: 143 AGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----------- 187
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
N Q + ++L +DV+SLH + +T +++ + ++ MK ++L+N SRG
Sbjct: 188 -GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 240
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF 299
V+D AL + L + +DVF
Sbjct: 241 TVVDIPALCDALASKHLAGAAIDVF 265
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 19/134 (14%)
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
TVGV+G GRIG A++ G +I D+++ +E + T
Sbjct: 148 TVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCTQV---------------- 190
Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
S+DEVL ++D+I++H K ++ ++ L MK AILVNC+RG ++D A++E +
Sbjct: 191 --SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248
Query: 287 KQNPMFRVGLDVFE 300
+ + G DV +
Sbjct: 249 ESGKLGGYGCDVLD 262
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 155 PNLFVGNLLKGQTVGVIGAGRIG---SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
PN +G +LKGQT+G+ G G+IG + Y R F MN++ + +
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR----AFGMNVLVWGRENSK---------- 195
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
+ +A+G + A S D + ++DV+S+H L+ T +I L MK A+ VN
Sbjct: 196 ERARADG-----FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNT 250
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
SR +++E +V L + +DVFE
Sbjct: 251 SRAELVEENGMVTALNRGRPGMAAIDVFE 279
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 14/114 (12%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
++G+T+ IGAGRIG +V L+YYD YQA L + E+ V
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 207
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276
+R +++E++ +AD+++++ L T LINKE L+ KK A LVN +RG +
Sbjct: 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAI 261
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 14/114 (12%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
++G+T+ IGAGRIG +V L+YYD YQA L + E+ V
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 208
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276
+R +++E++ +AD+++++ L T LINKE L+ KK A LVN +RG +
Sbjct: 209 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAI 262
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 22/211 (10%)
Query: 89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
A A+G N VD++AA K GI V N P R + EA+ G
Sbjct: 72 AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 131
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
+ + F +G+ +G+IG G IG+ ++ E + +YD+ L
Sbjct: 132 VGNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 182
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
N Q + ++L +DV+SLH + +T + + ++ K ++L
Sbjct: 183 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 229
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
+N SRG V+D AL + L + +DVF
Sbjct: 230 INASRGTVVDIPALADALASKHLAGAAIDVF 260
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 22/205 (10%)
Query: 95 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
+G N VD++AA K GI V N P R + EA+ G+++
Sbjct: 84 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 143
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
F +G+ +G+IG G IG+ ++ E + +YD+ L
Sbjct: 144 AGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----------- 188
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
N Q + ++L +DV+SLH + +T + + ++ K ++L+N SRG
Sbjct: 189 -GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRG 241
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF 299
V+D AL + L + +DVF
Sbjct: 242 TVVDIPALCDALASKHLAGAAIDVF 266
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 24/145 (16%)
Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
G L+ +T+G++G G +GS + +E + + D +A R ++ G F
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRL-QTRLEALGIRTLLCDPPRAARGDE-----GDF------ 161
Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
++DE+++EADV++ H L K T HL ++ + +K AIL+N RGP
Sbjct: 162 --------RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFE 300
V+D AL+ L V LDV+E
Sbjct: 214 VVDNAALLARLNAGQPLSVVLDVWE 238
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
L+G+T+G +GAGRIG + + + F NL+Y+D Q A LEK A
Sbjct: 168 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 214
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
K ++E+L + DVI ++ L + T + NKE + +KK ++VN +RG +++ A
Sbjct: 215 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 282 LVEHLKQNPMFRVGLDVFE 300
+V+ ++ + DV++
Sbjct: 272 VVDAVESGHIGGYSGDVWD 290
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
L+G+T+G +GAGRIG + + + F NL+Y+D Q A LEK A
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 208
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
K ++E+L + DVI ++ L + T + NKE + +KK ++VN +RG +++ A
Sbjct: 209 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 282 LVEHLKQNPMFRVGLDVFE 300
+V+ ++ + DV++
Sbjct: 266 VVDAVESGHIGGYSGDVWD 284
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 229 SMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
S++ +L EADVISLH L++ T HL+++ RLA ++ LVN SRG V+D AL
Sbjct: 160 SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRR 219
Query: 285 HLKQNPMFRVGLDVFE 300
L+ V LDV+E
Sbjct: 220 LLEGGADLEVALDVWE 235
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 94 AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 153
+G ++VD+ AA I V R + + ++ R G GW
Sbjct: 121 GIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GW 177
Query: 154 LPNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
V ++G VG + AGRIG R++ F M+L Y D + RL + V
Sbjct: 178 NIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK-- 231
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
E +TW ++ +++ DV++L+ L T H+IN E L K+ A LVN
Sbjct: 232 -------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNT 282
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVF 299
+RG + D A+V L+ + DV+
Sbjct: 283 ARGKLCDRDAIVRALESGRLAGYAGDVW 310
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 94 AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 153
+G ++VD+ AA I V R + + ++ R G GW
Sbjct: 122 GIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GW 178
Query: 154 LPNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
V ++G VG + AGRIG R++ F M+L Y D + RL + V
Sbjct: 179 NIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK-- 232
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
E +TW ++ +++ DV++L+ L T H+IN E L K+ A LVN
Sbjct: 233 -------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNT 283
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVF 299
+RG + D A+V L+ + DV+
Sbjct: 284 ARGKLCDRDAIVRALESGRLAGYAGDVW 311
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 136 RRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
+RI++ E + G Y D +P L++G+ V V+G G IG
Sbjct: 99 KRIIQYGEKXKRGDYGRDVEIP------LIQGEKVAVLGLGEIG---------------- 136
Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHPVLDKTTY 251
TR+ K + A G ++ P W+ +S++E LREA L+K T
Sbjct: 137 -------TRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTR 189
Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
L+ + LA ++A+ VN R V+D ++ LK+ P F DV+
Sbjct: 190 GLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 95 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
+G ++VD+ +A + V R + + E+ R G GW
Sbjct: 122 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
V + L+ VG + AGRIG A R + F ++L Y D + RL + V
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 229
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
E +TW ++ +++ DV++L+ L T H+IN E L K+ A +VN +
Sbjct: 230 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF 299
RG + D A+ L+ + DV+
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVW 310
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 95 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
+G ++VD+ +A + V R + + E+ R G GW
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
V + L+ VG + AGRIG A R + F ++L Y D + RL + V
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
E +TW ++ +++ DV++L+ L T H+IN E L K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF 299
RG + D A+ L+ + DV+
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVW 311
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 95 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
+G ++VD+ +A + V R + + E+ R G GW
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
V + L+ VG + AGRIG A R + F ++L Y D + RL + V
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
E +TW ++ +++ DV++L+ L T H+IN E L K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF 299
RG + D A+ L+ + DV+
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVW 311
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
L TT+HL + E K++ +L+N RGP +D AL+ L + + LDV E
Sbjct: 201 LTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTE 255
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 21/153 (13%)
Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
W + + G LKG+T+ ++G G IG A + F M ++ +R + + Q
Sbjct: 130 WQSHPYQG--LKGRTLLILGTGSIGQHIAHTG-KHFGMKVL-----GVSRSGRERAGFDQ 181
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVI-SLHPVLDKTTYHLINKERLATMKKEAILVNC 271
+ +++++L +ADVI S+ P + T+HL R K AIL N
Sbjct: 182 VYQL-----------PALNKMLAQADVIVSVLPA-TRETHHLFTASRFEHCKPGAILFNV 229
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEVTEL 304
RG I+E L+ L+ + LDVFE L
Sbjct: 230 GRGNAINEGDLLTALRTGKLGMAVLDVFEQEPL 262
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 143 EFMRAGLYDGWLPNLFVGN------------------LLKGQTVGVI--GAGRIGSAYAR 182
E +R+G D N +VGN L G+T+G+ G+G +G Y+
Sbjct: 257 ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSA 316
Query: 183 MMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLK 215
+VEG+K +L + R E V AY F K
Sbjct: 317 TLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFK 351
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 143 EFMRAGLYDGWLPNLFVGN------------------LLKGQTVGVI--GAGRIGSAYAR 182
E +R+G D N +VGN L G+T+G+ G+G +G Y+
Sbjct: 257 ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSA 316
Query: 183 MMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLK 215
+VEG+K +L + R E V AY F K
Sbjct: 317 TLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFK 351
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 143 EFMRAGLYDGWLPNLFVGN------------------LLKGQTVGVI--GAGRIGSAYAR 182
E +R+G D N +VGN L G+T+G+ G+G +G Y+
Sbjct: 257 ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSA 316
Query: 183 MMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLK 215
+VEG+K +L + R E V AY F K
Sbjct: 317 TLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFK 351
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 143 EFMRAGLYDGWLPNLFVGN------------------LLKGQTVGVI--GAGRIGSAYAR 182
E +R+G D N +VGN L G+T+G+ G+G +G Y+
Sbjct: 257 ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSA 316
Query: 183 MMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLK 215
+VEG+K +L + R E V AY F K
Sbjct: 317 TLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFK 351
>pdb|3IB3|A Chain A, Crystal Structure Of Sacol2612 - CoceNOND FAMILY HYDROLASE
FROM Staphylococcus Aureus
pdb|3IB3|B Chain B, Crystal Structure Of Sacol2612 - CoceNOND FAMILY HYDROLASE
FROM Staphylococcus Aureus
pdb|3III|A Chain A, 1.95 Angstrom Crystal Structure Of Coce/nond Family
Hydrolase (sacol2612) From Staphylococcus Aureus
Length = 560
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 56 IALIG-DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGN 114
+AL G DK GV+ ++ E + + A +++SN +G N V A ++ +A N
Sbjct: 123 VALRGSDKSKGVLSPWSKREAEDYYEVIEWAANQSWSNGNIGTNGVSYLAVTQWWVASLN 182
Query: 115 TP 116
P
Sbjct: 183 PP 184
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered Orthorhombic
Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231
G GR S YA+++ F+ +Y D Y+ R +F +LK E+ VT + ++
Sbjct: 1015 GIGR-PSTYAKIVEVLFRRGYVYEDKYKRVRPTRFGVMVYSYLKERYEKYVTEETTRRLE 1073
Query: 232 EVL 234
E++
Sbjct: 1074 EIM 1076
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A
Synthase From Staphylococcus Aureus
pdb|1TXT|A Chain A, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|B Chain B, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|C Chain C, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|D Chain D, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
Length = 388
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 22/95 (23%)
Query: 143 EFMRAGLYDGWLPNLFVGN------------------LLKGQTVGVI--GAGRIGSAYAR 182
E +R+G D N +VGN L G+T+G+ G+G + Y+
Sbjct: 257 ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVVEFYSA 316
Query: 183 MMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLK 215
+VEG+K +L + R E V AY F K
Sbjct: 317 TLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFK 351
>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
pdb|1Z82|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
Length = 335
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
T + Q L NGE+ + W R + +++ +V P ++++ + L +KKE I
Sbjct: 27 TVFAQXLHENGEEVILWARRKEIVDLI---NVSHTSPYVEESKITVRATNDLEEIKKEDI 83
Query: 268 LV 269
LV
Sbjct: 84 LV 85
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 211 GQFLKANGEQPVTWKRAS----------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
KA G + + + R+S S ++ R++D + + L T +N LA
Sbjct: 138 AHLAKAFGXRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLA 197
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQ 288
+K +VN +R V+ + + LK+
Sbjct: 198 NARKNLTIVNVARADVVSKPDXIGFLKE 225
>pdb|1SKU|A Chain A, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1SKU|C Chain C, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
Length = 310
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
G L NL V VG + GR + + + + F N Y+ A + +++
Sbjct: 150 GRLDNLHVA------MVGDLKYGRTVHSLTQALAK-FDGNRFYFIAPDALAMPQYI---- 198
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPV----LDKTTYHLINKE 257
L E+ + W SS++EV+ E D++ + V LD + Y +N +
Sbjct: 199 --LDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVNAQ 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,714,334
Number of Sequences: 62578
Number of extensions: 375482
Number of successful extensions: 998
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 80
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)