Query 019387
Match_columns 342
No_of_seqs 177 out of 1960
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02306 hydroxypyruvate reduc 100.0 2.3E-69 4.9E-74 524.5 32.5 335 1-337 1-344 (386)
2 COG1052 LdhA Lactate dehydroge 100.0 9.1E-66 2E-70 488.3 27.5 298 15-338 2-313 (324)
3 COG0111 SerA Phosphoglycerate 100.0 6.5E-66 1.4E-70 489.7 25.1 296 14-338 2-307 (324)
4 PRK15409 bifunctional glyoxyla 100.0 1.1E-64 2.4E-69 482.7 28.9 298 15-338 2-310 (323)
5 PRK08410 2-hydroxyacid dehydro 100.0 1.7E-63 3.7E-68 473.0 28.0 289 17-338 2-308 (311)
6 PRK11790 D-3-phosphoglycerate 100.0 1.2E-62 2.6E-67 482.5 28.7 299 9-338 4-317 (409)
7 PRK06487 glycerate dehydrogena 100.0 1E-62 2.3E-67 468.7 27.3 277 30-338 18-309 (317)
8 KOG0068 D-3-phosphoglycerate d 100.0 8.6E-63 1.9E-67 453.7 23.3 277 17-320 8-296 (406)
9 PRK06932 glycerate dehydrogena 100.0 1.6E-62 3.4E-67 466.7 26.0 262 50-338 33-311 (314)
10 PRK13243 glyoxylate reductase; 100.0 2.5E-61 5.4E-66 462.2 28.9 299 15-338 2-313 (333)
11 PRK07574 formate dehydrogenase 100.0 1.4E-59 3.1E-64 455.0 26.4 285 31-338 62-358 (385)
12 PLN03139 formate dehydrogenase 100.0 1.7E-59 3.6E-64 454.3 26.6 285 31-338 69-365 (386)
13 PLN02928 oxidoreductase family 100.0 5.5E-59 1.2E-63 447.9 28.6 305 11-338 14-336 (347)
14 TIGR01327 PGDH D-3-phosphoglyc 100.0 1.2E-58 2.7E-63 467.7 28.2 293 17-338 1-302 (525)
15 PRK12480 D-lactate dehydrogena 100.0 3.4E-58 7.4E-63 439.6 26.4 295 16-338 2-321 (330)
16 PRK13581 D-3-phosphoglycerate 100.0 5.9E-58 1.3E-62 462.8 28.1 293 16-338 1-303 (526)
17 PRK08605 D-lactate dehydrogena 100.0 1.1E-57 2.5E-62 436.9 26.9 300 13-338 1-323 (332)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 1.8E-56 4E-61 420.5 18.2 280 36-336 35-324 (336)
19 PRK15438 erythronate-4-phospha 100.0 1.6E-54 3.4E-59 418.1 25.0 266 16-337 1-278 (378)
20 PRK00257 erythronate-4-phospha 100.0 1.5E-53 3.3E-58 412.4 24.6 267 16-338 1-279 (381)
21 PRK06436 glycerate dehydrogena 100.0 3E-53 6.5E-58 400.4 24.4 239 62-337 34-280 (303)
22 PRK15469 ghrA bifunctional gly 100.0 3.7E-53 7.9E-58 401.8 24.6 279 17-337 2-297 (312)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 5.9E-46 1.3E-50 326.3 16.8 168 128-313 1-178 (178)
24 KOG0067 Transcription factor C 100.0 2.5E-31 5.4E-36 248.1 10.4 261 50-330 61-329 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 8.7E-22 1.9E-26 193.9 16.6 167 93-303 198-365 (476)
26 TIGR02853 spore_dpaA dipicolin 99.8 8E-20 1.7E-24 171.9 16.8 198 30-275 17-243 (287)
27 PF00389 2-Hacid_dh: D-isomer 99.7 1.7E-16 3.8E-21 132.6 12.4 101 18-127 1-101 (133)
28 PRK08306 dipicolinate synthase 99.7 9.5E-16 2.1E-20 145.0 18.2 198 29-273 17-242 (296)
29 PLN02494 adenosylhomocysteinas 99.7 7.4E-17 1.6E-21 158.8 10.8 122 161-303 250-374 (477)
30 TIGR00936 ahcY adenosylhomocys 99.7 3.7E-15 7.9E-20 145.6 16.9 123 161-303 191-314 (406)
31 PRK05476 S-adenosyl-L-homocyst 99.5 4.7E-13 1E-17 131.6 18.9 155 93-284 156-312 (425)
32 PRK13403 ketol-acid reductoiso 99.5 4.9E-14 1.1E-18 132.8 8.7 93 161-270 12-104 (335)
33 PF00670 AdoHcyase_NAD: S-aden 99.4 1.1E-12 2.3E-17 112.3 11.0 104 161-284 19-123 (162)
34 PF03446 NAD_binding_2: NAD bi 99.3 9.4E-12 2E-16 107.6 8.2 112 166-292 2-114 (163)
35 cd00401 AdoHcyase S-adenosyl-L 99.3 1.4E-10 3.1E-15 113.8 16.4 104 161-284 198-302 (413)
36 COG2084 MmsB 3-hydroxyisobutyr 99.2 3.6E-11 7.8E-16 112.3 10.2 124 166-303 1-126 (286)
37 TIGR01505 tartro_sem_red 2-hyd 99.2 4.9E-11 1.1E-15 112.5 10.1 111 167-292 1-113 (291)
38 PRK11559 garR tartronate semia 99.2 6.4E-11 1.4E-15 111.9 9.9 123 166-303 3-127 (296)
39 PRK15461 NADH-dependent gamma- 99.1 2.2E-10 4.8E-15 108.5 10.2 112 166-292 2-115 (296)
40 PRK12490 6-phosphogluconate de 99.1 3.4E-10 7.5E-15 107.3 11.2 113 167-297 2-117 (299)
41 PRK05479 ketol-acid reductoiso 99.1 3.7E-10 8E-15 107.8 8.2 97 161-274 13-109 (330)
42 PRK09599 6-phosphogluconate de 99.0 1.9E-09 4E-14 102.4 11.0 111 167-293 2-115 (301)
43 PLN02712 arogenate dehydrogena 99.0 1.7E-09 3.7E-14 112.7 11.0 113 159-288 363-476 (667)
44 COG0499 SAM1 S-adenosylhomocys 99.0 2.6E-09 5.6E-14 101.0 9.7 104 161-284 205-309 (420)
45 PLN02350 phosphogluconate dehy 98.9 5.2E-09 1.1E-13 105.2 10.7 128 167-303 8-138 (493)
46 PTZ00142 6-phosphogluconate de 98.9 1.1E-08 2.5E-13 102.4 10.1 128 166-303 2-132 (470)
47 PRK15059 tartronate semialdehy 98.8 1.4E-08 3.1E-13 96.0 10.0 113 167-297 2-116 (292)
48 PRK14189 bifunctional 5,10-met 98.8 2.1E-07 4.6E-12 87.1 17.5 171 31-276 55-234 (285)
49 PLN02256 arogenate dehydrogena 98.8 1.2E-08 2.5E-13 97.1 8.8 107 164-287 35-142 (304)
50 PLN02858 fructose-bisphosphate 98.8 2E-08 4.4E-13 112.0 10.9 111 165-290 4-116 (1378)
51 PLN02858 fructose-bisphosphate 98.8 1.8E-08 4E-13 112.3 10.6 109 165-288 324-434 (1378)
52 TIGR00872 gnd_rel 6-phosphoglu 98.8 4E-08 8.7E-13 93.2 11.5 109 167-292 2-113 (298)
53 TIGR00465 ilvC ketol-acid redu 98.8 2.8E-08 6E-13 94.8 9.4 98 163-277 1-98 (314)
54 TIGR00561 pntA NAD(P) transhyd 98.7 1.2E-06 2.6E-11 88.3 20.6 231 24-272 17-284 (511)
55 TIGR00518 alaDH alanine dehydr 98.7 4.4E-08 9.4E-13 95.7 10.0 109 162-278 164-275 (370)
56 TIGR01692 HIBADH 3-hydroxyisob 98.7 3.3E-08 7.2E-13 93.2 8.7 111 170-297 1-113 (288)
57 TIGR00873 gnd 6-phosphoglucona 98.7 4.9E-08 1.1E-12 97.9 10.2 126 167-303 1-129 (467)
58 KOG0409 Predicted dehydrogenas 98.7 4.1E-08 9E-13 91.1 8.5 116 162-292 32-150 (327)
59 PRK05225 ketol-acid reductoiso 98.7 1.6E-08 3.6E-13 99.2 5.9 96 161-275 32-133 (487)
60 KOG1370 S-adenosylhomocysteine 98.7 5E-08 1.1E-12 90.4 8.7 95 162-276 211-305 (434)
61 PRK14619 NAD(P)H-dependent gly 98.7 3.6E-08 7.9E-13 93.9 8.2 85 164-277 3-87 (308)
62 PRK07066 3-hydroxybutyryl-CoA 98.7 2.3E-07 5E-12 88.7 12.0 141 166-311 8-157 (321)
63 PRK14179 bifunctional 5,10-met 98.7 8.5E-07 1.9E-11 83.0 15.2 170 31-275 55-233 (284)
64 PRK14188 bifunctional 5,10-met 98.6 1.9E-06 4.1E-11 81.3 17.3 170 31-275 55-233 (296)
65 PLN02545 3-hydroxybutyryl-CoA 98.6 9E-08 1.9E-12 90.5 8.4 116 166-287 5-132 (295)
66 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 9.5E-07 2.1E-11 79.0 14.4 111 160-292 23-134 (200)
67 PF03807 F420_oxidored: NADP o 98.6 1.3E-07 2.7E-12 74.1 7.7 92 167-274 1-96 (96)
68 PLN02712 arogenate dehydrogena 98.6 8.8E-08 1.9E-12 100.0 8.7 95 164-275 51-146 (667)
69 PF07991 IlvN: Acetohydroxy ac 98.6 9.3E-08 2E-12 81.7 6.9 91 163-269 2-92 (165)
70 PRK14175 bifunctional 5,10-met 98.6 1.8E-06 3.9E-11 81.0 15.7 170 31-275 55-233 (286)
71 PRK14194 bifunctional 5,10-met 98.6 2E-07 4.4E-12 87.8 8.8 170 31-275 56-234 (301)
72 PRK09260 3-hydroxybutyryl-CoA 98.6 4.6E-07 9.9E-12 85.4 11.2 128 166-299 2-141 (288)
73 cd01080 NAD_bind_m-THF_DH_Cycl 98.5 4.2E-07 9.1E-12 79.0 9.3 82 161-278 40-122 (168)
74 PRK09424 pntA NAD(P) transhydr 98.5 8.8E-06 1.9E-10 82.3 18.6 228 30-273 23-286 (509)
75 PRK08818 prephenate dehydrogen 98.5 3.5E-07 7.6E-12 89.0 8.2 86 164-275 3-91 (370)
76 PRK13302 putative L-aspartate 98.5 7.4E-07 1.6E-11 83.4 9.9 111 165-292 6-118 (271)
77 PRK07530 3-hydroxybutyryl-CoA 98.5 1.6E-06 3.4E-11 81.9 12.0 138 166-311 5-157 (292)
78 PF01488 Shikimate_DH: Shikima 98.5 7.4E-07 1.6E-11 74.7 8.7 105 162-278 9-115 (135)
79 PRK07679 pyrroline-5-carboxyla 98.5 1.3E-06 2.8E-11 82.1 11.2 106 165-287 3-112 (279)
80 PLN02688 pyrroline-5-carboxyla 98.5 9.6E-07 2.1E-11 82.1 10.0 102 167-287 2-108 (266)
81 cd01065 NAD_bind_Shikimate_DH 98.5 3.5E-06 7.5E-11 71.6 12.6 115 162-291 16-133 (155)
82 PRK14618 NAD(P)H-dependent gly 98.4 2.1E-06 4.5E-11 82.5 12.2 116 165-288 4-123 (328)
83 PRK07417 arogenate dehydrogena 98.4 6.4E-07 1.4E-11 84.1 8.2 93 167-275 2-94 (279)
84 PRK10792 bifunctional 5,10-met 98.4 6.4E-06 1.4E-10 77.1 14.7 77 161-273 155-232 (285)
85 PRK07819 3-hydroxybutyryl-CoA 98.4 1.3E-06 2.8E-11 82.5 10.2 144 166-315 6-163 (286)
86 PRK07502 cyclohexadienyl dehyd 98.4 8.9E-07 1.9E-11 84.2 9.0 96 165-275 6-103 (307)
87 PRK14176 bifunctional 5,10-met 98.4 2.2E-05 4.7E-10 73.6 17.5 168 31-273 61-237 (287)
88 PRK06545 prephenate dehydrogen 98.4 9.1E-07 2E-11 86.1 8.3 98 166-276 1-99 (359)
89 PRK08655 prephenate dehydrogen 98.4 1.3E-06 2.9E-11 87.1 9.5 105 167-287 2-107 (437)
90 PRK11199 tyrA bifunctional cho 98.4 2E-06 4.3E-11 84.2 10.2 111 120-275 67-178 (374)
91 PRK12491 pyrroline-5-carboxyla 98.3 2.1E-06 4.5E-11 80.5 8.9 104 166-287 3-110 (272)
92 PRK14191 bifunctional 5,10-met 98.3 2E-05 4.4E-10 73.8 15.3 170 31-275 54-232 (285)
93 PRK15182 Vi polysaccharide bio 98.3 2E-06 4.4E-11 85.5 9.2 109 166-286 7-134 (425)
94 PRK11064 wecC UDP-N-acetyl-D-m 98.3 4.2E-06 9E-11 83.1 11.2 109 166-288 4-135 (415)
95 PRK06035 3-hydroxyacyl-CoA deh 98.3 7.8E-06 1.7E-10 77.2 12.5 131 166-303 4-149 (291)
96 PRK05472 redox-sensing transcr 98.3 5.1E-07 1.1E-11 81.5 4.1 132 123-288 63-201 (213)
97 PRK08293 3-hydroxybutyryl-CoA 98.3 7.6E-06 1.6E-10 77.1 12.1 142 166-312 4-159 (287)
98 PRK06928 pyrroline-5-carboxyla 98.3 5.6E-06 1.2E-10 77.7 10.9 106 166-287 2-111 (277)
99 PF01210 NAD_Gly3P_dh_N: NAD-d 98.3 3.8E-06 8.3E-11 72.1 8.6 105 167-275 1-106 (157)
100 PRK05808 3-hydroxybutyryl-CoA 98.3 5.6E-06 1.2E-10 77.8 10.4 140 166-311 4-156 (282)
101 PRK00094 gpsA NAD(P)H-dependen 98.3 3.6E-06 7.7E-11 80.3 9.2 108 166-277 2-110 (325)
102 PF01262 AlaDh_PNT_C: Alanine 98.2 2.9E-06 6.3E-11 73.7 7.3 110 161-272 16-139 (168)
103 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.2 7.9E-06 1.7E-10 82.9 11.5 131 166-303 6-148 (503)
104 PRK08507 prephenate dehydrogen 98.2 4.8E-06 1E-10 78.0 8.7 100 167-288 2-103 (275)
105 COG0287 TyrA Prephenate dehydr 98.2 2.8E-06 6.1E-11 79.7 7.0 107 165-286 3-112 (279)
106 PRK08268 3-hydroxy-acyl-CoA de 98.2 1.2E-05 2.5E-10 81.8 11.6 131 166-303 8-150 (507)
107 TIGR03026 NDP-sugDHase nucleot 98.2 1E-05 2.2E-10 80.1 10.7 117 167-286 2-134 (411)
108 TIGR01724 hmd_rel H2-forming N 98.2 7.3E-06 1.6E-10 77.5 8.7 98 177-288 32-129 (341)
109 PRK14170 bifunctional 5,10-met 98.2 0.00012 2.5E-09 68.7 16.6 170 31-275 54-232 (284)
110 PRK07531 bifunctional 3-hydrox 98.2 7.5E-06 1.6E-10 83.1 9.3 129 166-301 5-141 (495)
111 PRK06130 3-hydroxybutyryl-CoA 98.2 1.4E-05 3.1E-10 76.0 10.7 116 166-287 5-128 (311)
112 cd05311 NAD_bind_2_malic_enz N 98.1 2.1E-05 4.6E-10 71.6 10.8 140 161-315 21-170 (226)
113 PRK14190 bifunctional 5,10-met 98.1 0.00013 2.9E-09 68.4 16.2 171 31-276 55-234 (284)
114 PRK14173 bifunctional 5,10-met 98.1 0.00011 2.3E-09 69.1 15.5 187 15-276 31-231 (287)
115 PRK06476 pyrroline-5-carboxyla 98.1 9.1E-06 2E-10 75.3 8.0 104 167-289 2-108 (258)
116 PRK14169 bifunctional 5,10-met 98.1 0.00013 2.8E-09 68.3 15.4 170 31-275 53-231 (282)
117 PRK07680 late competence prote 98.1 2E-05 4.3E-10 73.7 10.1 104 167-287 2-109 (273)
118 PF02882 THF_DHG_CYH_C: Tetrah 98.1 1.9E-05 4.2E-10 68.0 8.9 80 161-276 32-112 (160)
119 PRK14166 bifunctional 5,10-met 98.1 0.00014 3E-09 68.2 15.1 169 31-273 53-230 (282)
120 PRK14186 bifunctional 5,10-met 98.1 0.00016 3.4E-09 68.3 15.5 171 31-276 55-234 (297)
121 PRK14178 bifunctional 5,10-met 98.1 1.4E-05 3.1E-10 74.6 8.5 170 31-275 49-227 (279)
122 PRK14171 bifunctional 5,10-met 98.1 0.00071 1.5E-08 63.6 19.7 169 31-273 55-232 (288)
123 PRK07634 pyrroline-5-carboxyla 98.1 3.4E-05 7.3E-10 70.7 10.6 108 165-289 4-114 (245)
124 TIGR01035 hemA glutamyl-tRNA r 98.1 1.7E-05 3.7E-10 78.7 9.3 104 162-280 177-285 (417)
125 PRK14172 bifunctional 5,10-met 98.0 0.00019 4.2E-09 67.1 15.5 185 15-274 34-232 (278)
126 PRK06129 3-hydroxyacyl-CoA deh 98.0 2.1E-05 4.6E-10 74.9 9.3 119 166-288 3-132 (308)
127 COG0686 Ald Alanine dehydrogen 98.0 1.2E-05 2.5E-10 75.3 7.0 108 162-278 165-276 (371)
128 TIGR01546 GAPDH-II_archae glyc 98.0 2.3E-05 5.1E-10 75.1 9.4 101 168-272 1-108 (333)
129 PLN00203 glutamyl-tRNA reducta 98.0 2.5E-05 5.5E-10 79.3 10.1 105 162-278 263-375 (519)
130 PF02737 3HCDH_N: 3-hydroxyacy 98.0 1.9E-05 4.1E-10 69.5 7.9 140 167-311 1-152 (180)
131 PLN02897 tetrahydrofolate dehy 98.0 0.00014 3.1E-09 69.6 14.2 171 31-275 109-289 (345)
132 PRK15057 UDP-glucose 6-dehydro 98.0 2.9E-05 6.2E-10 76.4 9.9 119 167-289 2-134 (388)
133 PRK14192 bifunctional 5,10-met 98.0 3E-05 6.5E-10 73.0 9.4 79 161-275 155-234 (283)
134 cd05191 NAD_bind_amino_acid_DH 98.0 4.6E-05 9.9E-10 58.6 8.9 67 161-272 19-86 (86)
135 PRK14806 bifunctional cyclohex 98.0 2.6E-05 5.5E-10 82.9 10.0 107 166-287 4-112 (735)
136 PRK13304 L-aspartate dehydroge 98.0 3.6E-05 7.7E-10 71.9 9.6 108 166-291 2-114 (265)
137 PRK14182 bifunctional 5,10-met 98.0 0.00071 1.5E-08 63.4 18.2 187 15-275 32-232 (282)
138 PLN02616 tetrahydrofolate dehy 98.0 0.00035 7.7E-09 67.2 16.1 171 31-275 126-306 (364)
139 PRK14167 bifunctional 5,10-met 98.0 0.00036 7.9E-09 65.8 15.8 171 31-275 54-236 (297)
140 TIGR02371 ala_DH_arch alanine 97.9 4.2E-05 9E-10 73.5 9.2 95 165-273 128-223 (325)
141 PF03721 UDPG_MGDP_dh_N: UDP-g 97.9 5.2E-05 1.1E-09 67.0 9.1 120 166-288 1-137 (185)
142 COG2085 Predicted dinucleotide 97.9 4.7E-05 1E-09 67.9 8.7 94 166-274 2-95 (211)
143 PRK14181 bifunctional 5,10-met 97.9 0.0007 1.5E-08 63.6 17.0 171 31-275 49-232 (287)
144 cd05212 NAD_bind_m-THF_DH_Cycl 97.9 0.00015 3.3E-09 61.1 11.0 80 160-275 23-103 (140)
145 PRK14185 bifunctional 5,10-met 97.9 0.00053 1.1E-08 64.6 15.3 171 31-275 54-236 (293)
146 PRK00045 hemA glutamyl-tRNA re 97.9 5.8E-05 1.3E-09 75.1 9.4 102 162-278 179-286 (423)
147 PRK09287 6-phosphogluconate de 97.9 5.3E-05 1.1E-09 76.0 8.9 117 176-303 1-120 (459)
148 cd05213 NAD_bind_Glutamyl_tRNA 97.9 8.2E-05 1.8E-09 71.0 9.7 102 163-278 176-279 (311)
149 PRK06141 ornithine cyclodeamin 97.9 9.2E-05 2E-09 70.8 10.0 95 164-272 124-219 (314)
150 PF10727 Rossmann-like: Rossma 97.8 2.5E-05 5.3E-10 64.8 4.7 92 165-272 10-104 (127)
151 PRK14168 bifunctional 5,10-met 97.8 0.00074 1.6E-08 63.8 14.9 172 31-275 56-240 (297)
152 PRK07340 ornithine cyclodeamin 97.8 0.00014 3.1E-09 69.2 10.3 94 164-273 124-218 (304)
153 PRK11880 pyrroline-5-carboxyla 97.8 0.0001 2.3E-09 68.4 8.9 102 166-287 3-107 (267)
154 PF02423 OCD_Mu_crystall: Orni 97.8 0.00014 3.1E-09 69.5 9.7 99 166-276 129-228 (313)
155 COG0345 ProC Pyrroline-5-carbo 97.8 0.00024 5.1E-09 66.1 10.6 100 166-287 2-108 (266)
156 cd01079 NAD_bind_m-THF_DH NAD 97.8 0.00022 4.8E-09 63.0 9.9 95 159-273 56-157 (197)
157 COG1023 Gnd Predicted 6-phosph 97.7 0.00028 6.1E-09 63.9 10.3 115 166-298 1-118 (300)
158 PRK00258 aroE shikimate 5-dehy 97.7 0.00019 4.2E-09 67.4 9.6 118 162-290 120-238 (278)
159 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00028 6E-09 62.5 10.0 111 161-280 24-137 (194)
160 PRK14183 bifunctional 5,10-met 97.7 0.00016 3.6E-09 67.6 8.8 168 31-273 54-230 (281)
161 PRK08229 2-dehydropantoate 2-r 97.7 0.00021 4.6E-09 68.7 9.8 120 166-293 3-127 (341)
162 PRK06823 ornithine cyclodeamin 97.7 0.00016 3.5E-09 69.2 8.7 94 165-272 128-222 (315)
163 PRK08618 ornithine cyclodeamin 97.7 0.00026 5.6E-09 68.0 10.2 96 164-273 126-222 (325)
164 PRK12921 2-dehydropantoate 2-r 97.7 0.0002 4.4E-09 67.6 9.1 119 167-292 2-121 (305)
165 KOG2380 Prephenate dehydrogena 97.6 0.00011 2.4E-09 69.5 6.5 107 165-288 52-159 (480)
166 PRK14982 acyl-ACP reductase; P 97.6 0.00043 9.4E-09 66.7 10.5 102 160-280 150-254 (340)
167 PRK06046 alanine dehydrogenase 97.6 0.00045 9.7E-09 66.4 10.4 94 165-272 129-223 (326)
168 PTZ00431 pyrroline carboxylate 97.6 0.00022 4.7E-09 66.3 7.8 96 166-286 4-102 (260)
169 PRK14184 bifunctional 5,10-met 97.6 0.00032 6.8E-09 65.9 8.7 168 31-273 54-234 (286)
170 PRK14174 bifunctional 5,10-met 97.6 0.00032 7E-09 66.2 8.8 172 31-275 54-238 (295)
171 PRK14187 bifunctional 5,10-met 97.6 0.00037 8E-09 65.6 9.2 171 31-275 55-235 (294)
172 COG2423 Predicted ornithine cy 97.6 0.00075 1.6E-08 64.8 11.2 95 165-272 130-225 (330)
173 PLN02516 methylenetetrahydrofo 97.6 0.00039 8.5E-09 65.6 9.1 171 31-275 62-242 (299)
174 PRK14180 bifunctional 5,10-met 97.6 0.00039 8.5E-09 65.1 9.0 169 31-273 54-231 (282)
175 COG0059 IlvC Ketol-acid reduct 97.5 0.0002 4.3E-09 67.0 6.7 91 162-268 15-105 (338)
176 TIGR02992 ectoine_eutC ectoine 97.5 0.00064 1.4E-08 65.3 10.6 95 165-272 129-224 (326)
177 TIGR03376 glycerol3P_DH glycer 97.5 0.00032 7E-09 67.8 8.4 107 167-278 1-122 (342)
178 PRK14177 bifunctional 5,10-met 97.5 0.00049 1.1E-08 64.5 9.1 169 30-273 55-232 (284)
179 cd01076 NAD_bind_1_Glu_DH NAD( 97.5 0.0013 2.8E-08 60.0 11.6 117 161-292 27-154 (227)
180 TIGR01915 npdG NADPH-dependent 97.5 0.00063 1.4E-08 61.5 9.4 103 167-276 2-105 (219)
181 PRK06407 ornithine cyclodeamin 97.5 0.00076 1.7E-08 64.1 10.2 95 165-272 117-212 (301)
182 PRK14193 bifunctional 5,10-met 97.5 0.00063 1.4E-08 63.9 9.1 171 31-275 55-235 (284)
183 TIGR02354 thiF_fam2 thiamine b 97.5 0.00052 1.1E-08 61.4 8.2 111 161-273 17-146 (200)
184 COG0190 FolD 5,10-methylene-te 97.4 0.00051 1.1E-08 63.9 7.9 211 31-335 53-274 (283)
185 PRK06199 ornithine cyclodeamin 97.4 0.00088 1.9E-08 65.7 10.0 101 165-274 155-261 (379)
186 PRK06522 2-dehydropantoate 2-r 97.4 0.0013 2.8E-08 62.0 10.9 129 167-303 2-132 (304)
187 PRK13940 glutamyl-tRNA reducta 97.4 0.0019 4E-08 64.1 12.3 101 162-278 178-279 (414)
188 PTZ00345 glycerol-3-phosphate 97.4 0.00065 1.4E-08 66.2 8.9 111 166-278 12-135 (365)
189 PRK08291 ectoine utilization p 97.4 0.00097 2.1E-08 64.2 9.8 94 165-271 132-226 (330)
190 TIGR00507 aroE shikimate 5-deh 97.4 0.0012 2.6E-08 61.7 10.1 111 163-289 115-229 (270)
191 PRK07589 ornithine cyclodeamin 97.4 0.00095 2.1E-08 64.6 9.4 96 165-272 129-225 (346)
192 PRK12557 H(2)-dependent methyl 97.4 0.00062 1.3E-08 65.9 8.1 100 177-287 32-132 (342)
193 COG1712 Predicted dinucleotide 97.4 0.00072 1.6E-08 60.8 7.8 96 167-280 2-99 (255)
194 PLN02353 probable UDP-glucose 97.3 0.0011 2.3E-08 66.9 9.5 120 166-288 2-143 (473)
195 PRK12439 NAD(P)H-dependent gly 97.3 0.00085 1.9E-08 64.9 8.1 106 166-276 8-115 (341)
196 PRK12549 shikimate 5-dehydroge 97.3 0.0029 6.2E-08 59.7 11.0 117 162-289 124-243 (284)
197 TIGR01921 DAP-DH diaminopimela 97.3 0.00095 2.1E-08 63.8 7.8 87 166-272 4-91 (324)
198 TIGR00658 orni_carb_tr ornithi 97.2 0.062 1.3E-06 51.2 20.1 106 163-272 146-264 (304)
199 PRK11154 fadJ multifunctional 97.2 0.0029 6.4E-08 67.0 12.2 142 166-311 310-463 (708)
200 COG0240 GpsA Glycerol-3-phosph 97.2 0.0014 2.9E-08 62.6 8.6 115 166-283 2-116 (329)
201 TIGR02440 FadJ fatty oxidation 97.2 0.0037 8.1E-08 66.1 12.5 142 166-311 305-458 (699)
202 PRK13301 putative L-aspartate 97.2 0.0019 4.2E-08 59.9 9.0 103 166-288 3-112 (267)
203 COG1064 AdhP Zn-dependent alco 97.2 0.0015 3.2E-08 62.7 8.6 95 164-273 166-260 (339)
204 PRK00676 hemA glutamyl-tRNA re 97.2 0.0015 3.2E-08 62.9 8.5 97 162-279 171-268 (338)
205 PRK12548 shikimate 5-dehydroge 97.2 0.0024 5.1E-08 60.4 9.7 124 162-289 123-252 (289)
206 PRK06718 precorrin-2 dehydroge 97.2 0.0011 2.3E-08 59.5 6.9 77 161-248 6-82 (202)
207 TIGR01470 cysG_Nterm siroheme 97.2 0.0012 2.7E-08 59.2 7.4 94 161-271 5-99 (205)
208 PF01118 Semialdhyde_dh: Semia 97.2 0.00086 1.9E-08 54.9 5.8 96 167-273 1-98 (121)
209 PRK11730 fadB multifunctional 97.2 0.0037 8.1E-08 66.3 11.8 141 166-311 314-466 (715)
210 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0069 1.5E-07 54.9 11.7 116 161-291 19-144 (217)
211 PRK02102 ornithine carbamoyltr 97.1 0.062 1.3E-06 51.8 18.5 106 163-272 153-273 (331)
212 PF13241 NAD_binding_7: Putati 97.1 0.00043 9.2E-09 55.1 3.1 88 162-272 4-91 (103)
213 PRK14620 NAD(P)H-dependent gly 97.1 0.0021 4.6E-08 61.5 8.5 104 167-275 2-109 (326)
214 PRK01713 ornithine carbamoyltr 97.0 0.1 2.2E-06 50.4 19.5 107 162-272 153-275 (334)
215 PTZ00117 malate dehydrogenase; 97.0 0.0037 7.9E-08 60.0 9.6 131 163-297 3-151 (319)
216 PRK09310 aroDE bifunctional 3- 97.0 0.0057 1.2E-07 61.9 11.3 104 160-288 327-430 (477)
217 TIGR00670 asp_carb_tr aspartat 97.0 0.16 3.4E-06 48.4 20.3 111 162-280 147-272 (301)
218 PLN02477 glutamate dehydrogena 97.0 0.011 2.3E-07 58.6 12.7 117 161-292 202-329 (410)
219 PRK02255 putrescine carbamoylt 97.0 0.14 3E-06 49.6 20.0 114 162-279 151-282 (338)
220 PRK00779 ornithine carbamoyltr 97.0 0.16 3.4E-06 48.5 20.1 110 163-279 150-275 (304)
221 COG0373 HemA Glutamyl-tRNA red 97.0 0.0041 8.8E-08 61.3 9.5 103 162-279 175-281 (414)
222 PF01408 GFO_IDH_MocA: Oxidore 97.0 0.0046 1E-07 49.8 8.3 105 167-288 2-111 (120)
223 TIGR02441 fa_ox_alpha_mit fatt 97.0 0.0064 1.4E-07 64.7 11.6 141 166-311 336-488 (737)
224 KOG0023 Alcohol dehydrogenase, 97.0 0.0016 3.5E-08 61.5 6.2 40 164-204 181-220 (360)
225 PRK09414 glutamate dehydrogena 97.0 0.0064 1.4E-07 60.7 10.7 120 160-292 227-362 (445)
226 TIGR01763 MalateDH_bact malate 97.0 0.0037 8.1E-08 59.5 8.8 127 166-297 2-147 (305)
227 TIGR02964 xanthine_xdhC xanthi 97.0 0.0039 8.4E-08 57.6 8.6 92 166-295 101-192 (246)
228 PF00208 ELFV_dehydrog: Glutam 96.9 0.014 3E-07 53.9 12.0 123 161-292 28-165 (244)
229 cd05313 NAD_bind_2_Glu_DH NAD( 96.9 0.019 4E-07 53.3 12.7 123 161-292 34-172 (254)
230 TIGR02437 FadB fatty oxidation 96.9 0.0098 2.1E-07 63.1 12.2 141 166-311 314-466 (714)
231 PRK06249 2-dehydropantoate 2-r 96.9 0.0039 8.6E-08 59.4 8.4 121 166-295 6-128 (313)
232 PRK12562 ornithine carbamoyltr 96.9 0.19 4.1E-06 48.5 19.9 107 162-272 153-275 (334)
233 cd00650 LDH_MDH_like NAD-depen 96.9 0.002 4.4E-08 59.9 6.2 127 168-298 1-148 (263)
234 PF01113 DapB_N: Dihydrodipico 96.9 0.004 8.6E-08 51.3 7.2 110 167-287 2-113 (124)
235 TIGR02356 adenyl_thiF thiazole 96.8 0.0039 8.4E-08 55.8 7.2 98 161-263 17-137 (202)
236 PRK03515 ornithine carbamoyltr 96.8 0.12 2.6E-06 49.9 17.8 107 162-272 153-275 (336)
237 PRK04284 ornithine carbamoyltr 96.8 0.19 4.2E-06 48.5 19.2 106 163-272 153-274 (332)
238 COG0677 WecC UDP-N-acetyl-D-ma 96.8 0.0027 5.8E-08 61.7 6.4 118 166-288 10-144 (436)
239 PLN02527 aspartate carbamoyltr 96.8 0.28 6.1E-06 46.8 20.1 109 163-279 149-274 (306)
240 PRK00856 pyrB aspartate carbam 96.7 0.47 1E-05 45.2 21.2 101 163-280 154-273 (305)
241 PF00185 OTCace: Aspartate/orn 96.7 0.022 4.9E-07 48.9 11.0 113 164-280 1-131 (158)
242 COG1250 FadB 3-hydroxyacyl-CoA 96.7 0.018 4E-07 54.7 11.3 134 165-303 3-146 (307)
243 PRK13303 L-aspartate dehydroge 96.6 0.0081 1.8E-07 56.0 8.4 108 166-291 2-114 (265)
244 TIGR03316 ygeW probable carbam 96.6 0.13 2.9E-06 50.0 16.9 106 162-271 167-312 (357)
245 PRK06719 precorrin-2 dehydroge 96.6 0.005 1.1E-07 52.9 6.3 41 160-201 8-48 (157)
246 TIGR01809 Shik-DH-AROM shikima 96.6 0.016 3.5E-07 54.6 10.1 78 163-247 123-201 (282)
247 COG1748 LYS9 Saccharopine dehy 96.6 0.011 2.3E-07 58.0 9.1 111 166-288 2-114 (389)
248 PRK11891 aspartate carbamoyltr 96.6 0.35 7.6E-06 48.2 19.7 103 162-272 238-355 (429)
249 PRK14031 glutamate dehydrogena 96.6 0.014 3.1E-07 58.2 10.0 121 160-291 223-360 (444)
250 PRK12475 thiamine/molybdopteri 96.6 0.0058 1.3E-07 59.1 7.0 95 161-260 20-139 (338)
251 PRK14030 glutamate dehydrogena 96.6 0.019 4E-07 57.3 10.6 122 160-292 223-362 (445)
252 PRK01710 murD UDP-N-acetylmura 96.5 0.014 2.9E-07 58.8 9.7 118 162-288 11-141 (458)
253 PRK04207 glyceraldehyde-3-phos 96.5 0.014 3.1E-07 56.4 9.2 79 167-246 3-88 (341)
254 COG0026 PurK Phosphoribosylami 96.5 0.0051 1.1E-07 59.3 5.7 68 165-242 1-68 (375)
255 PLN02342 ornithine carbamoyltr 96.5 0.5 1.1E-05 45.9 19.4 104 162-272 191-307 (348)
256 PF03720 UDPG_MGDP_dh_C: UDP-g 96.4 0.015 3.3E-07 46.4 7.5 84 175-271 17-100 (106)
257 PRK06223 malate dehydrogenase; 96.4 0.02 4.3E-07 54.4 9.5 76 166-245 3-79 (307)
258 PF03435 Saccharop_dh: Sacchar 96.4 0.0054 1.2E-07 60.1 5.7 93 168-271 1-97 (386)
259 smart00859 Semialdhyde_dh Semi 96.4 0.011 2.3E-07 48.2 6.5 95 167-272 1-99 (122)
260 PLN02819 lysine-ketoglutarate 96.4 0.36 7.8E-06 53.2 19.7 109 163-277 201-345 (1042)
261 PTZ00082 L-lactate dehydrogena 96.4 0.021 4.6E-07 54.8 9.4 129 163-295 4-153 (321)
262 PRK00048 dihydrodipicolinate r 96.3 0.019 4.1E-07 53.3 8.6 66 166-245 2-69 (257)
263 COG0362 Gnd 6-phosphogluconate 96.3 0.037 8E-07 53.9 10.5 127 166-303 4-133 (473)
264 PTZ00079 NADP-specific glutama 96.3 0.041 8.9E-07 54.9 11.3 124 160-292 232-371 (454)
265 PRK08192 aspartate carbamoyltr 96.3 0.58 1.3E-05 45.3 18.8 103 162-271 156-273 (338)
266 PF13478 XdhC_C: XdhC Rossmann 96.3 0.0073 1.6E-07 50.6 4.9 86 168-296 1-86 (136)
267 cd00757 ThiF_MoeB_HesA_family 96.2 0.012 2.7E-07 53.5 6.8 104 161-272 17-143 (228)
268 TIGR01381 E1_like_apg7 E1-like 96.2 0.025 5.4E-07 58.6 9.1 62 119-197 307-370 (664)
269 PRK08306 dipicolinate synthase 96.1 0.071 1.5E-06 50.6 11.7 107 164-293 1-117 (296)
270 PRK08644 thiamine biosynthesis 96.1 0.021 4.6E-07 51.5 7.7 98 161-263 24-143 (212)
271 COG1648 CysG Siroheme synthase 96.1 0.015 3.2E-07 52.4 6.6 96 161-272 8-103 (210)
272 PF13380 CoA_binding_2: CoA bi 96.1 0.023 4.9E-07 46.3 7.0 101 166-293 1-105 (116)
273 PF02558 ApbA: Ketopantoate re 96.1 0.0083 1.8E-07 50.5 4.6 122 168-296 1-124 (151)
274 COG0569 TrkA K+ transport syst 96.1 0.011 2.4E-07 53.8 5.7 76 166-248 1-78 (225)
275 PRK14106 murD UDP-N-acetylmura 96.1 0.054 1.2E-06 54.1 11.1 118 163-288 3-132 (450)
276 cd05312 NAD_bind_1_malic_enz N 96.1 0.087 1.9E-06 49.4 11.6 158 123-315 4-196 (279)
277 PRK13814 pyrB aspartate carbam 96.1 0.53 1.2E-05 45.0 17.2 95 163-272 155-264 (310)
278 COG1004 Ugd Predicted UDP-gluc 96.1 0.053 1.2E-06 52.9 10.4 120 166-288 1-136 (414)
279 cd05293 LDH_1 A subgroup of L- 96.0 0.041 8.8E-07 52.6 9.4 122 166-295 4-145 (312)
280 PRK07232 bifunctional malic en 96.0 0.16 3.4E-06 54.1 14.5 165 107-313 151-325 (752)
281 PRK12862 malic enzyme; Reviewe 96.0 0.15 3.3E-06 54.4 14.2 164 108-313 160-333 (763)
282 PRK14804 ornithine carbamoyltr 96.0 0.58 1.3E-05 44.7 17.0 73 162-243 150-225 (311)
283 PLN02819 lysine-ketoglutarate 95.9 0.026 5.7E-07 61.8 8.6 76 164-246 568-658 (1042)
284 PRK12861 malic enzyme; Reviewe 95.9 0.13 2.9E-06 54.6 13.4 162 109-313 157-329 (764)
285 PRK12749 quinate/shikimate deh 95.9 0.087 1.9E-06 49.8 11.0 120 162-289 121-249 (288)
286 PRK07688 thiamine/molybdopteri 95.9 0.018 4E-07 55.7 6.6 96 161-261 20-140 (339)
287 cd00762 NAD_bind_malic_enz NAD 95.9 0.13 2.8E-06 47.6 11.7 159 123-314 4-196 (254)
288 PRK08269 3-hydroxybutyryl-CoA 95.9 0.063 1.4E-06 51.4 10.0 132 176-312 1-154 (314)
289 PRK06270 homoserine dehydrogen 95.8 0.062 1.3E-06 52.0 9.9 121 167-291 4-145 (341)
290 cd05297 GH4_alpha_glucosidase_ 95.8 0.037 8E-07 55.2 8.4 78 167-246 2-84 (423)
291 PRK08762 molybdopterin biosynt 95.8 0.072 1.6E-06 52.2 10.3 95 161-260 131-248 (376)
292 PRK03369 murD UDP-N-acetylmura 95.8 0.035 7.5E-07 56.4 8.2 113 163-288 10-141 (488)
293 COG3288 PntA NAD/NADP transhyd 95.7 0.028 6E-07 53.0 6.7 112 161-275 160-286 (356)
294 TIGR03026 NDP-sugDHase nucleot 95.7 0.059 1.3E-06 53.4 9.4 89 162-271 310-409 (411)
295 COG0334 GdhA Glutamate dehydro 95.7 0.045 9.7E-07 53.7 8.1 115 161-289 203-328 (411)
296 PRK14027 quinate/shikimate deh 95.7 0.12 2.6E-06 48.7 10.8 120 162-290 124-246 (283)
297 PRK09880 L-idonate 5-dehydroge 95.6 0.075 1.6E-06 51.0 9.7 96 164-274 169-268 (343)
298 PRK00683 murD UDP-N-acetylmura 95.6 0.027 5.9E-07 55.9 6.8 109 165-288 3-126 (418)
299 cd01339 LDH-like_MDH L-lactate 95.6 0.035 7.5E-07 52.7 7.1 123 168-295 1-140 (300)
300 PRK05562 precorrin-2 dehydroge 95.6 0.039 8.5E-07 50.1 7.0 96 159-271 19-115 (223)
301 PRK10637 cysG siroheme synthas 95.6 0.04 8.7E-07 55.5 7.8 96 161-272 8-103 (457)
302 COG0078 ArgF Ornithine carbamo 95.6 1.2 2.6E-05 42.1 16.9 105 163-271 151-269 (310)
303 cd01492 Aos1_SUMO Ubiquitin ac 95.6 0.042 9.2E-07 48.9 7.1 37 161-198 17-54 (197)
304 PRK05690 molybdopterin biosynt 95.6 0.032 6.9E-07 51.5 6.5 105 161-271 28-153 (245)
305 PRK00066 ldh L-lactate dehydro 95.5 0.045 9.9E-07 52.4 7.7 103 164-272 5-122 (315)
306 PF02153 PDH: Prephenate dehyd 95.5 0.019 4E-07 53.4 4.9 92 181-287 2-94 (258)
307 PF00056 Ldh_1_N: lactate/mala 95.5 0.043 9.4E-07 46.2 6.6 75 167-245 2-78 (141)
308 KOG2304 3-hydroxyacyl-CoA dehy 95.5 0.012 2.5E-07 53.2 3.2 134 164-303 10-160 (298)
309 PRK06444 prephenate dehydrogen 95.5 0.021 4.6E-07 50.9 4.9 27 167-194 2-29 (197)
310 PLN02353 probable UDP-glucose 95.5 0.15 3.2E-06 51.6 11.5 115 162-283 321-456 (473)
311 PRK04523 N-acetylornithine car 95.5 1.1 2.5E-05 43.2 17.1 78 163-244 166-252 (335)
312 TIGR00036 dapB dihydrodipicoli 95.5 0.059 1.3E-06 50.3 8.1 73 167-245 3-77 (266)
313 PRK05708 2-dehydropantoate 2-r 95.5 0.068 1.5E-06 50.8 8.6 125 166-296 3-127 (305)
314 PF02254 TrkA_N: TrkA-N domain 95.5 0.031 6.8E-07 44.7 5.4 89 168-269 1-93 (116)
315 cd05188 MDR Medium chain reduc 95.5 0.18 3.9E-06 45.6 11.1 98 164-277 134-237 (271)
316 PRK06019 phosphoribosylaminoim 95.5 0.023 5E-07 55.5 5.5 68 165-242 2-69 (372)
317 PRK09496 trkA potassium transp 95.5 0.039 8.6E-07 55.0 7.2 74 166-247 1-76 (453)
318 PRK08300 acetaldehyde dehydrog 95.4 0.088 1.9E-06 50.0 9.0 101 165-282 4-118 (302)
319 COG5322 Predicted dehydrogenas 95.4 0.054 1.2E-06 50.2 7.2 108 159-280 161-269 (351)
320 COG0169 AroE Shikimate 5-dehyd 95.4 0.14 3.1E-06 48.2 10.3 118 161-290 122-243 (283)
321 COG0771 MurD UDP-N-acetylmuram 95.3 0.074 1.6E-06 53.2 8.5 132 163-303 5-157 (448)
322 cd01483 E1_enzyme_family Super 95.3 0.072 1.6E-06 44.6 7.3 31 167-198 1-32 (143)
323 PRK06392 homoserine dehydrogen 95.3 0.06 1.3E-06 51.8 7.5 116 167-289 2-134 (326)
324 cd05291 HicDH_like L-2-hydroxy 95.2 0.081 1.8E-06 50.3 8.3 107 166-279 1-122 (306)
325 PRK02472 murD UDP-N-acetylmura 95.2 0.2 4.4E-06 49.9 11.5 117 163-288 3-132 (447)
326 TIGR01532 E4PD_g-proteo D-eryt 95.2 0.073 1.6E-06 51.2 7.9 45 167-212 1-49 (325)
327 cd01487 E1_ThiF_like E1_ThiF_l 95.2 0.047 1E-06 47.6 6.0 88 167-261 1-112 (174)
328 TIGR02355 moeB molybdopterin s 95.1 0.055 1.2E-06 49.8 6.5 96 161-261 20-138 (240)
329 PRK11579 putative oxidoreducta 95.1 0.063 1.4E-06 51.9 7.1 67 166-247 5-75 (346)
330 COG1004 Ugd Predicted UDP-gluc 95.1 0.15 3.2E-06 49.9 9.4 68 163-245 308-385 (414)
331 cd01486 Apg7 Apg7 is an E1-lik 95.0 0.057 1.2E-06 51.2 6.4 40 229-272 101-140 (307)
332 PLN02520 bifunctional 3-dehydr 95.0 0.1 2.3E-06 53.5 8.7 114 161-290 375-492 (529)
333 PRK06153 hypothetical protein; 95.0 0.068 1.5E-06 52.3 6.9 112 161-278 172-304 (393)
334 PRK05600 thiamine biosynthesis 94.9 0.087 1.9E-06 51.6 7.7 96 161-261 37-155 (370)
335 PRK02006 murD UDP-N-acetylmura 94.9 0.11 2.4E-06 52.7 8.6 118 163-290 5-147 (498)
336 PF03447 NAD_binding_3: Homose 94.8 0.041 8.8E-07 44.4 4.3 95 172-286 1-103 (117)
337 COG0057 GapA Glyceraldehyde-3- 94.8 0.072 1.6E-06 50.8 6.5 46 166-211 2-48 (335)
338 cd05292 LDH_2 A subgroup of L- 94.8 0.1 2.2E-06 49.7 7.7 98 167-272 2-116 (308)
339 COG2344 AT-rich DNA-binding pr 94.8 0.059 1.3E-06 47.3 5.4 67 167-246 86-156 (211)
340 COG0281 SfcA Malic enzyme [Ene 94.8 0.26 5.6E-06 48.5 10.2 171 107-314 165-343 (432)
341 PRK08328 hypothetical protein; 94.8 0.076 1.6E-06 48.5 6.4 105 161-272 23-150 (231)
342 cd00755 YgdL_like Family of ac 94.8 0.31 6.8E-06 44.5 10.4 140 161-305 7-185 (231)
343 PRK01438 murD UDP-N-acetylmura 94.7 0.097 2.1E-06 52.8 7.7 119 161-288 12-146 (480)
344 TIGR01850 argC N-acetyl-gamma- 94.7 0.12 2.7E-06 50.0 8.1 102 166-279 1-106 (346)
345 PRK08223 hypothetical protein; 94.7 0.11 2.5E-06 48.9 7.4 100 161-261 23-143 (287)
346 PF02629 CoA_binding: CoA bind 94.7 0.056 1.2E-06 42.3 4.6 66 166-246 4-72 (96)
347 PRK00421 murC UDP-N-acetylmura 94.6 0.13 2.9E-06 51.7 8.3 115 163-290 5-133 (461)
348 PRK15182 Vi polysaccharide bio 94.6 0.43 9.3E-06 47.6 11.8 96 160-276 309-416 (425)
349 PRK05597 molybdopterin biosynt 94.6 0.094 2E-06 51.1 6.9 96 161-263 24-144 (355)
350 PLN02602 lactate dehydrogenase 94.6 0.17 3.7E-06 49.1 8.6 103 166-272 38-154 (350)
351 PRK00141 murD UDP-N-acetylmura 94.5 0.17 3.6E-06 51.2 8.7 117 161-289 11-146 (473)
352 PRK01390 murD UDP-N-acetylmura 94.4 0.22 4.7E-06 50.0 9.3 111 163-288 7-138 (460)
353 cd00300 LDH_like L-lactate deh 94.4 0.22 4.7E-06 47.3 8.8 99 168-272 1-115 (300)
354 PF00044 Gp_dh_N: Glyceraldehy 94.3 0.093 2E-06 44.8 5.4 45 167-211 2-47 (151)
355 PRK04690 murD UDP-N-acetylmura 94.2 0.13 2.8E-06 52.0 7.2 116 163-288 6-139 (468)
356 PLN02968 Probable N-acetyl-gam 94.2 0.15 3.2E-06 50.2 7.3 109 163-284 36-146 (381)
357 PRK07806 short chain dehydroge 94.2 0.26 5.6E-06 44.5 8.5 37 163-200 4-41 (248)
358 PRK11064 wecC UDP-N-acetyl-D-m 94.0 0.14 3E-06 51.0 6.9 71 160-246 315-396 (415)
359 PF13460 NAD_binding_10: NADH( 94.0 0.095 2.1E-06 45.1 5.1 70 168-249 1-73 (183)
360 KOG2711 Glycerol-3-phosphate d 94.0 0.25 5.4E-06 47.3 8.1 109 164-274 20-141 (372)
361 PRK07411 hypothetical protein; 94.0 0.14 3.1E-06 50.4 6.9 102 161-264 34-155 (390)
362 cd08230 glucose_DH Glucose deh 94.0 0.22 4.8E-06 47.9 8.0 95 164-273 172-270 (355)
363 TIGR03215 ac_ald_DH_ac acetald 93.9 0.32 6.9E-06 45.9 8.7 90 167-272 3-95 (285)
364 PLN02272 glyceraldehyde-3-phos 93.9 0.25 5.3E-06 49.0 8.2 46 166-211 86-132 (421)
365 PRK06349 homoserine dehydrogen 93.9 0.28 6.1E-06 49.0 8.8 108 166-291 4-124 (426)
366 PRK00436 argC N-acetyl-gamma-g 93.9 0.22 4.8E-06 48.2 7.8 100 166-281 3-108 (343)
367 cd01485 E1-1_like Ubiquitin ac 93.9 0.2 4.3E-06 44.7 6.9 37 161-198 15-52 (198)
368 PRK09496 trkA potassium transp 93.9 0.18 3.9E-06 50.2 7.4 99 163-271 229-330 (453)
369 PRK04148 hypothetical protein; 93.8 0.19 4.2E-06 41.9 6.3 36 164-201 16-51 (134)
370 PRK10669 putative cation:proto 93.8 0.14 3E-06 52.9 6.6 91 166-269 418-512 (558)
371 PRK05086 malate dehydrogenase; 93.8 0.26 5.7E-06 47.1 8.1 101 166-274 1-120 (312)
372 PRK07200 aspartate/ornithine c 93.8 2.7 5.9E-05 41.5 15.2 107 162-272 184-330 (395)
373 PRK12550 shikimate 5-dehydroge 93.7 0.31 6.7E-06 45.7 8.3 105 165-289 122-232 (272)
374 PF04016 DUF364: Domain of unk 93.7 0.3 6.5E-06 41.4 7.5 84 163-272 9-95 (147)
375 PRK01368 murD UDP-N-acetylmura 93.6 0.19 4.1E-06 50.6 7.0 111 164-288 5-128 (454)
376 TIGR01202 bchC 2-desacetyl-2-h 93.6 0.23 4.9E-06 47.0 7.2 88 164-273 144-232 (308)
377 PLN02948 phosphoribosylaminoim 93.6 0.17 3.7E-06 52.5 6.8 38 162-200 19-56 (577)
378 PRK03659 glutathione-regulated 93.5 0.16 3.5E-06 52.9 6.6 96 165-273 400-499 (601)
379 COG0673 MviM Predicted dehydro 93.5 0.33 7.1E-06 46.3 8.3 70 166-248 4-79 (342)
380 cd08239 THR_DH_like L-threonin 93.5 0.23 5.1E-06 47.2 7.2 96 164-274 163-264 (339)
381 PRK07877 hypothetical protein; 93.4 0.3 6.4E-06 51.9 8.4 98 161-261 103-220 (722)
382 cd08293 PTGR2 Prostaglandin re 93.4 0.43 9.3E-06 45.4 9.0 94 165-273 155-255 (345)
383 cd08281 liver_ADH_like1 Zinc-d 93.4 0.35 7.6E-06 46.9 8.5 94 164-273 191-291 (371)
384 PRK04308 murD UDP-N-acetylmura 93.4 0.35 7.5E-06 48.4 8.6 117 163-288 3-134 (445)
385 cd05294 LDH-like_MDH_nadp A la 93.4 0.72 1.6E-05 44.0 10.3 124 166-295 1-146 (309)
386 TIGR01161 purK phosphoribosyla 93.3 0.13 2.9E-06 49.6 5.3 34 167-201 1-34 (352)
387 PRK12937 short chain dehydroge 93.3 0.38 8.2E-06 43.2 8.0 36 163-199 3-39 (245)
388 TIGR02853 spore_dpaA dipicolin 93.3 1 2.2E-05 42.5 11.1 105 165-292 1-115 (287)
389 TIGR02717 AcCoA-syn-alpha acet 93.3 0.5 1.1E-05 47.5 9.5 111 162-295 4-126 (447)
390 PLN02586 probable cinnamyl alc 93.1 0.39 8.6E-06 46.5 8.2 96 164-273 183-279 (360)
391 PRK03803 murD UDP-N-acetylmura 93.1 0.98 2.1E-05 45.2 11.3 114 165-288 6-132 (448)
392 TIGR01772 MDH_euk_gproteo mala 93.1 0.28 6.1E-06 46.9 7.0 103 167-279 1-121 (312)
393 PRK07231 fabG 3-ketoacyl-(acyl 93.0 0.4 8.6E-06 43.2 7.6 39 162-201 2-41 (251)
394 PF05368 NmrA: NmrA-like famil 92.9 0.28 6E-06 44.2 6.4 85 168-260 1-93 (233)
395 PRK07878 molybdopterin biosynt 92.9 0.27 5.8E-06 48.6 6.7 100 161-263 38-158 (392)
396 TIGR03451 mycoS_dep_FDH mycoth 92.9 0.51 1.1E-05 45.5 8.6 94 164-273 176-277 (358)
397 PF03949 Malic_M: Malic enzyme 92.8 0.76 1.6E-05 42.6 9.1 130 123-285 4-157 (255)
398 COG1063 Tdh Threonine dehydrog 92.8 0.58 1.3E-05 45.4 8.9 95 165-274 169-271 (350)
399 TIGR01761 thiaz-red thiazoliny 92.8 0.51 1.1E-05 45.7 8.4 111 166-294 4-119 (343)
400 PRK06701 short chain dehydroge 92.7 0.45 9.7E-06 44.6 7.8 39 161-200 42-81 (290)
401 TIGR01087 murD UDP-N-acetylmur 92.7 0.8 1.7E-05 45.5 10.0 115 167-290 1-128 (433)
402 PLN03154 putative allyl alcoho 92.7 0.58 1.3E-05 45.1 8.7 93 164-272 158-258 (348)
403 cd05290 LDH_3 A subgroup of L- 92.7 0.38 8.3E-06 45.9 7.2 72 167-245 1-77 (307)
404 PRK06128 oxidoreductase; Provi 92.6 0.5 1.1E-05 44.4 8.0 36 162-198 52-88 (300)
405 PLN02178 cinnamyl-alcohol dehy 92.6 0.58 1.3E-05 45.7 8.7 37 164-201 178-214 (375)
406 TIGR03366 HpnZ_proposed putati 92.6 0.64 1.4E-05 43.2 8.5 94 164-273 120-219 (280)
407 PRK11863 N-acetyl-gamma-glutam 92.5 0.37 8.1E-06 46.1 6.9 77 166-272 3-81 (313)
408 PRK03562 glutathione-regulated 92.5 0.13 2.7E-06 54.0 4.1 93 165-270 400-496 (621)
409 PRK14805 ornithine carbamoyltr 92.5 9.9 0.00022 36.2 19.4 104 162-271 144-260 (302)
410 TIGR02825 B4_12hDH leukotriene 92.4 0.61 1.3E-05 44.1 8.4 95 164-274 138-239 (325)
411 cd08296 CAD_like Cinnamyl alco 92.3 0.79 1.7E-05 43.5 9.1 95 164-273 163-260 (333)
412 PRK15057 UDP-glucose 6-dehydro 92.2 0.42 9.2E-06 47.1 7.2 65 163-245 294-368 (388)
413 PRK15076 alpha-galactosidase; 92.2 0.55 1.2E-05 47.0 8.0 125 166-295 2-169 (431)
414 TIGR03201 dearomat_had 6-hydro 92.2 0.72 1.6E-05 44.3 8.6 37 164-201 166-202 (349)
415 PLN00106 malate dehydrogenase 92.2 0.4 8.7E-06 46.1 6.7 105 164-275 17-138 (323)
416 PRK10206 putative oxidoreducta 92.1 0.42 9E-06 46.3 6.9 69 167-248 3-76 (344)
417 cd08295 double_bond_reductase_ 92.1 0.79 1.7E-05 43.6 8.7 95 164-273 151-252 (338)
418 cd05283 CAD1 Cinnamyl alcohol 92.1 0.68 1.5E-05 44.1 8.3 96 164-274 169-265 (337)
419 smart00846 Gp_dh_N Glyceraldeh 92.1 0.38 8.2E-06 40.9 5.8 31 167-197 2-33 (149)
420 PRK12742 oxidoreductase; Provi 92.0 1.1 2.4E-05 40.0 9.1 35 163-198 4-39 (237)
421 PRK07984 enoyl-(acyl carrier p 92.0 0.64 1.4E-05 42.9 7.7 35 163-198 4-41 (262)
422 TIGR01851 argC_other N-acetyl- 92.0 0.57 1.2E-05 44.7 7.4 76 167-272 3-80 (310)
423 PLN02740 Alcohol dehydrogenase 91.9 0.8 1.7E-05 44.6 8.7 37 164-201 198-235 (381)
424 cd08233 butanediol_DH_like (2R 91.9 0.99 2.1E-05 43.2 9.2 95 164-273 172-273 (351)
425 PRK09189 uroporphyrinogen-III 91.8 2.1 4.6E-05 38.9 10.9 54 16-69 1-55 (240)
426 PTZ00325 malate dehydrogenase; 91.8 0.53 1.2E-05 45.2 7.1 77 162-246 5-86 (321)
427 cd08294 leukotriene_B4_DH_like 91.8 0.84 1.8E-05 42.9 8.5 94 164-273 143-242 (329)
428 PLN02514 cinnamyl-alcohol dehy 91.7 0.83 1.8E-05 44.1 8.5 96 164-273 180-276 (357)
429 KOG4230 C1-tetrahydrofolate sy 91.7 0.58 1.3E-05 47.8 7.4 82 161-278 158-240 (935)
430 PF00070 Pyr_redox: Pyridine n 91.7 0.34 7.3E-06 36.2 4.6 33 167-200 1-33 (80)
431 cd01491 Ube1_repeat1 Ubiquitin 91.7 1 2.3E-05 42.5 8.8 38 161-199 15-53 (286)
432 TIGR02822 adh_fam_2 zinc-bindi 91.6 0.6 1.3E-05 44.6 7.3 91 164-273 165-255 (329)
433 KOG2653 6-phosphogluconate deh 91.6 0.95 2E-05 43.8 8.3 127 166-303 7-136 (487)
434 PRK02261 methylaspartate mutas 91.6 2.6 5.6E-05 35.3 10.2 113 13-128 1-131 (137)
435 PF00899 ThiF: ThiF family; I 91.5 0.2 4.3E-06 41.5 3.4 34 165-199 2-36 (135)
436 PLN02214 cinnamoyl-CoA reducta 91.5 0.62 1.3E-05 44.8 7.3 83 162-245 7-90 (342)
437 cd01338 MDH_choloroplast_like 91.5 1.1 2.4E-05 43.1 8.9 114 166-285 3-139 (322)
438 PRK07370 enoyl-(acyl carrier p 91.5 0.88 1.9E-05 41.7 8.0 35 162-197 3-40 (258)
439 cd08234 threonine_DH_like L-th 91.4 0.73 1.6E-05 43.5 7.7 96 164-275 159-260 (334)
440 cd01337 MDH_glyoxysomal_mitoch 91.4 0.76 1.6E-05 43.9 7.7 99 167-274 2-119 (310)
441 COG2185 Sbm Methylmalonyl-CoA 91.4 5.5 0.00012 33.6 11.8 118 13-133 10-139 (143)
442 PRK13529 malate dehydrogenase; 91.3 3 6.6E-05 42.9 12.2 176 107-315 261-473 (563)
443 PLN03129 NADP-dependent malic 91.3 3.4 7.3E-05 42.7 12.5 171 107-316 287-493 (581)
444 PF05222 AlaDh_PNT_N: Alanine 91.3 0.88 1.9E-05 38.0 7.1 66 226-301 54-119 (136)
445 cd08237 ribitol-5-phosphate_DH 91.2 1.2 2.6E-05 42.7 9.0 93 164-273 163-257 (341)
446 cd08301 alcohol_DH_plants Plan 91.2 1.1 2.3E-05 43.4 8.6 37 164-201 187-224 (369)
447 COG0540 PyrB Aspartate carbamo 91.2 0.65 1.4E-05 44.0 6.7 73 163-243 156-231 (316)
448 PRK10309 galactitol-1-phosphat 91.1 1 2.2E-05 43.0 8.5 94 164-272 160-260 (347)
449 cd08260 Zn_ADH6 Alcohol dehydr 91.1 1 2.2E-05 42.8 8.5 96 164-274 165-266 (345)
450 PRK08374 homoserine dehydrogen 91.0 0.62 1.3E-05 45.0 6.7 128 166-303 3-155 (336)
451 PRK02705 murD UDP-N-acetylmura 90.7 0.81 1.8E-05 45.8 7.6 117 167-288 2-133 (459)
452 COG0039 Mdh Malate/lactate deh 90.7 0.69 1.5E-05 44.2 6.6 34 166-199 1-35 (313)
453 COG0677 WecC UDP-N-acetyl-D-ma 90.6 1.6 3.4E-05 43.0 8.9 95 160-274 317-421 (436)
454 cd08292 ETR_like_2 2-enoyl thi 90.6 1.7 3.6E-05 40.7 9.2 94 164-273 139-239 (324)
455 cd08277 liver_alcohol_DH_like 90.6 0.71 1.5E-05 44.7 6.8 95 164-273 184-287 (365)
456 KOG0022 Alcohol dehydrogenase, 90.5 0.38 8.2E-06 45.8 4.5 122 164-298 192-322 (375)
457 PLN03096 glyceraldehyde-3-phos 90.5 1.1 2.4E-05 44.2 8.0 32 166-197 61-94 (395)
458 PRK07576 short chain dehydroge 90.5 0.73 1.6E-05 42.3 6.5 39 162-201 6-45 (264)
459 COG1893 ApbA Ketopantoate redu 90.4 0.67 1.5E-05 44.2 6.3 117 166-289 1-117 (307)
460 cd08245 CAD Cinnamyl alcohol d 90.4 1.4 3E-05 41.6 8.5 95 164-273 162-257 (330)
461 PRK06114 short chain dehydroge 90.4 0.73 1.6E-05 41.9 6.4 38 162-200 5-43 (254)
462 PRK14573 bifunctional D-alanyl 90.4 1.9 4.1E-05 46.7 10.4 112 166-290 5-130 (809)
463 cd08269 Zn_ADH9 Alcohol dehydr 90.4 1.5 3.3E-05 40.7 8.6 96 164-274 129-231 (312)
464 PRK06172 short chain dehydroge 90.3 0.68 1.5E-05 41.9 6.1 39 162-201 4-43 (253)
465 PRK04663 murD UDP-N-acetylmura 90.3 2.6 5.7E-05 42.0 10.8 113 164-288 5-132 (438)
466 PRK08217 fabG 3-ketoacyl-(acyl 90.3 0.73 1.6E-05 41.4 6.3 37 163-200 3-40 (253)
467 TIGR02818 adh_III_F_hyde S-(hy 90.3 1.3 2.9E-05 42.9 8.4 37 164-201 185-222 (368)
468 PRK08664 aspartate-semialdehyd 90.2 1.3 2.8E-05 43.0 8.2 32 166-197 4-36 (349)
469 PLN03209 translocon at the inn 90.2 0.81 1.8E-05 47.3 7.0 81 164-246 79-169 (576)
470 PRK13535 erythrose 4-phosphate 90.1 0.92 2E-05 43.8 7.0 31 167-197 3-36 (336)
471 PRK05866 short chain dehydroge 90.1 0.97 2.1E-05 42.4 7.1 40 160-200 35-75 (293)
472 PRK14851 hypothetical protein; 90.0 0.77 1.7E-05 48.6 6.9 36 161-197 39-75 (679)
473 cd08255 2-desacetyl-2-hydroxye 90.0 1.3 2.9E-05 40.5 7.8 93 164-274 97-192 (277)
474 PRK03806 murD UDP-N-acetylmura 90.0 0.48 1E-05 47.2 5.2 114 163-288 4-129 (438)
475 PRK13376 pyrB bifunctional asp 89.9 1.3 2.8E-05 45.4 8.1 103 162-272 171-293 (525)
476 KOG2741 Dimeric dihydrodiol de 89.9 1.2 2.5E-05 43.0 7.3 72 166-248 7-84 (351)
477 PRK08324 short chain dehydroge 89.9 0.93 2E-05 48.0 7.5 40 161-201 418-458 (681)
478 PRK12826 3-ketoacyl-(acyl-carr 89.8 1 2.2E-05 40.4 6.7 38 162-200 3-41 (251)
479 PRK10083 putative oxidoreducta 89.7 1.6 3.5E-05 41.3 8.4 96 164-274 160-261 (339)
480 PRK07985 oxidoreductase; Provi 89.6 1.4 3E-05 41.4 7.7 35 163-198 47-82 (294)
481 cd01488 Uba3_RUB Ubiquitin act 89.6 1.4 3E-05 41.8 7.5 104 167-273 1-129 (291)
482 PRK07523 gluconate 5-dehydroge 89.5 1 2.2E-05 40.9 6.6 38 162-200 7-45 (255)
483 cd08278 benzyl_alcohol_DH Benz 89.5 2.2 4.7E-05 41.2 9.3 95 164-274 186-287 (365)
484 cd01489 Uba2_SUMO Ubiquitin ac 89.5 0.95 2.1E-05 43.3 6.5 97 167-272 1-122 (312)
485 cd08231 MDR_TM0436_like Hypoth 89.5 1.8 4E-05 41.5 8.7 95 164-273 177-281 (361)
486 PTZ00317 NADP-dependent malic 89.4 4.9 0.00011 41.3 11.8 174 108-315 264-472 (559)
487 PTZ00188 adrenodoxin reductase 89.4 2.2 4.7E-05 43.4 9.2 85 162-246 36-136 (506)
488 TIGR03649 ergot_EASG ergot alk 89.0 0.97 2.1E-05 41.9 6.1 70 167-247 1-78 (285)
489 PLN02827 Alcohol dehydrogenase 89.0 2.2 4.8E-05 41.6 8.9 94 164-273 193-296 (378)
490 TIGR01759 MalateDH-SF1 malate 88.9 1.4 3E-05 42.4 7.3 108 167-281 5-136 (323)
491 cd05298 GH4_GlvA_pagL_like Gly 88.9 1.7 3.7E-05 43.6 8.1 124 167-293 2-164 (437)
492 PRK08628 short chain dehydroge 88.9 1.1 2.4E-05 40.7 6.3 40 161-201 3-43 (258)
493 PRK07326 short chain dehydroge 88.8 1.3 2.7E-05 39.6 6.6 38 163-201 4-42 (237)
494 PRK06949 short chain dehydroge 88.8 1.3 2.9E-05 40.0 6.8 39 162-201 6-45 (258)
495 PRK08589 short chain dehydroge 88.7 1.1 2.4E-05 41.3 6.3 35 163-198 4-39 (272)
496 PRK07239 bifunctional uroporph 88.7 9 0.00019 37.4 13.0 150 10-197 6-178 (381)
497 PRK07109 short chain dehydroge 88.5 1.6 3.4E-05 41.9 7.4 38 162-200 5-43 (334)
498 PLN00112 malate dehydrogenase 88.5 4.6 9.9E-05 40.6 10.7 116 166-288 101-240 (444)
499 cd08300 alcohol_DH_class_III c 88.5 2.5 5.4E-05 40.9 8.8 37 164-201 186-223 (368)
500 cd08291 ETR_like_1 2-enoyl thi 88.4 3.1 6.7E-05 39.2 9.3 94 164-273 142-243 (324)
No 1
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=2.3e-69 Score=524.46 Aligned_cols=335 Identities=86% Similarity=1.271 Sum_probs=283.0
Q ss_pred CCCceeEEEeCCCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHH
Q 019387 1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA 80 (342)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~ 80 (342)
|+|+++++|.+|..+++|+++.+++++..++.|++.+++++.....+...+.+++.+.+.+++|++++...+++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~ 80 (386)
T PLN02306 1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS 80 (386)
T ss_pred CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence 89999999999999999999999887545678877777886543333346889998887545999998877789999999
Q ss_pred HhhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc
Q 019387 81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (342)
Q Consensus 81 ~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~ 160 (342)
+++++++|+|++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|.+|.+....|
T Consensus 81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g 160 (386)
T PLN02306 81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG 160 (386)
T ss_pred hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence 99986679999999999999999999999999999999999999999999999999999999999999998886544457
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+|.||||||||+|+||+.+|++++++|||+|++||++.....+.+...++......+..+..+....+|++++++||+|
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 89999999999999999999999634999999999998754322211111100111111111122236899999999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCcccccc
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKH 311 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPh 311 (342)
++|+|+|++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++|| ||+++|||
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH 320 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH 320 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence 999999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred ccccccccccccccCchhhccccccc
Q 019387 312 ISTQDRATSCPKLTREWPIYDNSCCI 337 (342)
Q Consensus 312 ia~~~~~~~~~~~~~~~~~~~~~~~~ 337 (342)
+|++|.+.. ..+.++.++|...++
T Consensus 321 iag~T~e~~--~~~~~~~~~ni~~~~ 344 (386)
T PLN02306 321 IASASKWTR--EGMATLAALNVLGKL 344 (386)
T ss_pred cccCcHHHH--HHHHHHHHHHHHHHH
Confidence 999998754 666677777776654
No 2
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=9.1e-66 Score=488.30 Aligned_cols=298 Identities=37% Similarity=0.514 Sum_probs=258.3
Q ss_pred ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (342)
Q Consensus 15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~ 94 (342)
++.++.+.+++++. ++.+.+. ++++........ .. ++.+... ++|++++....+++.++++++|++ |+|+..|
T Consensus 2 k~~~~~~~~~~~~~-~~~l~~~-~~~~~~~~~~~~-~~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~~ 74 (324)
T COG1052 2 KIVVLSTRKLPPEV-LERLKEK-FEVERYEDDLTP-DT-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATRS 74 (324)
T ss_pred CcEEEecCcCCHHH-HHHhhcc-EEEEEeccCCcc-ch-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEec
Confidence 45688888888864 5677655 677765433222 22 5566666 499999998889999999999987 9999999
Q ss_pred ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-CCcccccccCCCeEEEEec
Q 019387 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL-PNLFVGNLLKGQTVGVIGA 173 (342)
Q Consensus 95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~-~~~~~~~~L~gktvgIvG~ 173 (342)
+||||||+++|+++||.|+|+|++++++||||+++++|++.|++.++++++|+|.|..|. +....|.+++|||+||+|+
T Consensus 75 ~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~ 154 (324)
T COG1052 75 AGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGL 154 (324)
T ss_pred cccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999998763 3345678999999999999
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (342)
Q Consensus 174 G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l 253 (342)
|+||+++|+++ ++|||+|++||+++.+..++. ..+ .+.++++++++||+|++|||+|++|+|+
T Consensus 155 GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~~---------------~~~-~y~~l~ell~~sDii~l~~Plt~~T~hL 217 (324)
T COG1052 155 GRIGQAVARRL-KGFGMKVLYYDRSPNPEAEKE---------------LGA-RYVDLDELLAESDIISLHCPLTPETRHL 217 (324)
T ss_pred CHHHHHHHHHH-hcCCCEEEEECCCCChHHHhh---------------cCc-eeccHHHHHHhCCEEEEeCCCChHHhhh
Confidence 99999999996 799999999999975322210 112 2345999999999999999999999999
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-------------CCccccccccccccccc
Q 019387 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-------------LGFSSFKHISTQDRATS 320 (342)
Q Consensus 254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-------------~~~~~tPhia~~~~~~~ 320 (342)
||++.|++||+|++|||+|||++||++||++||++|+|+||||||||.|| ||+++|||+|++|.++.
T Consensus 218 in~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~ 297 (324)
T COG1052 218 INAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEAR 297 (324)
T ss_pred cCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999 44999999999999877
Q ss_pred cccccCchhhcccccccc
Q 019387 321 CPKLTREWPIYDNSCCIR 338 (342)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~ 338 (342)
..|.+-.++|..++++
T Consensus 298 --~~m~~~~~~nl~~~~~ 313 (324)
T COG1052 298 --KAMAELALENLEAFFD 313 (324)
T ss_pred --HHHHHHHHHHHHHHHc
Confidence 8888888888887764
No 3
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-66 Score=489.70 Aligned_cols=296 Identities=35% Similarity=0.450 Sum_probs=258.6
Q ss_pred CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (342)
Q Consensus 14 ~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~ 93 (342)
.+++++.+.++.++. ++.+++. .++++.. ....+.+++.+.+.+ +|++++ ...++++++++.+++| |+|++.
T Consensus 2 ~~~~vl~~~~~~~~~-~~~l~~~-~~~~~~~--~~~~~~~~l~~~~~~-~d~~~~-~~~~v~~~~l~~~~~L--k~I~~~ 73 (324)
T COG0111 2 MMIKVLVTDPLAPDA-LEELLAA-YDVEVPD--GPDLDEEELLEALAD-ADALIV-SVTPVTEEVLAAAPNL--KAIGRA 73 (324)
T ss_pred CcceeeccCccCHHH-HHHHHhc-ccccccc--ccccchHHHHhhccc-CcEEEE-ecCCCCHHHHhhCCCc--eEEEEc
Confidence 578899999999865 5666554 4444332 234567778888875 999888 6678999999999987 999999
Q ss_pred cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEec
Q 019387 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (342)
Q Consensus 94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~ 173 (342)
|+|+|+||+++++++||.|+|+|+.|+.+||||+++++|++.|+++.+++.+++|.|++ ..+.|.+|+||||||||+
T Consensus 74 g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG~ 150 (324)
T COG0111 74 GAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIGL 150 (324)
T ss_pred cccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999875 445678999999999999
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (342)
Q Consensus 174 G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l 253 (342)
|+||+.+|+++ ++|||+|++||++.....+. ..+....++|+++|++||||++|+|+|++|+||
T Consensus 151 G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~ 214 (324)
T COG0111 151 GRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRGL 214 (324)
T ss_pred CHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence 99999999996 89999999999976542111 112334578999999999999999999999999
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCcccccccccccccccccc
Q 019387 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPK 323 (342)
Q Consensus 254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~ 323 (342)
||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++|| ||+++|||+|+.|.++. .
T Consensus 215 i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~--~ 292 (324)
T COG0111 215 INAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQ--E 292 (324)
T ss_pred cCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHH--H
Confidence 99999999999999999999999999999999999999999999999998 89999999999999844 7
Q ss_pred ccCchhhcccccccc
Q 019387 324 LTREWPIYDNSCCIR 338 (342)
Q Consensus 324 ~~~~~~~~~~~~~~~ 338 (342)
....+.++|...+++
T Consensus 293 ~~~~~~~~~i~~~l~ 307 (324)
T COG0111 293 RVAEIVAENIVRYLA 307 (324)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888888888876654
No 4
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.1e-64 Score=482.67 Aligned_cols=298 Identities=31% Similarity=0.461 Sum_probs=255.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (342)
Q Consensus 15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~ 94 (342)
+++||++.+++++ .++.|++. +++.... .....+.+++.+.+.+ +|++++.. .++++++++++|+| |+|++.|
T Consensus 2 ~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~~~~~~~~-ad~li~~~-~~~~~~~l~~~p~L--k~I~~~g 74 (323)
T PRK15409 2 KPSVILYKALPDD-LLQRLEEH-FTVTQVA-NLSPETVEQHAAAFAE-AEGLLGSG-EKVDAALLEKMPKL--RAASTIS 74 (323)
T ss_pred CceEEEeCCCCHH-HHHHHHhc-CcEEEcC-CCCCCCHHHHHHHhcC-CeEEEEcC-CCCCHHHHhhCCCC--eEEEECc
Confidence 4789999988754 46777664 5665432 1223467788888875 99999764 47999999999987 9999999
Q ss_pred ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC
Q 019387 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG 174 (342)
Q Consensus 95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G 174 (342)
+|+|+||+++|+++||.|+|+|++++++||||++++||+++|++..+++.+++|.|..+......|.+|+|||+||||+|
T Consensus 75 ~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G 154 (323)
T PRK15409 75 VGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG 154 (323)
T ss_pred eecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999998654322235789999999999999
Q ss_pred HHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387 175 RIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (342)
Q Consensus 175 ~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l 253 (342)
+||+.+|+++ + +|||+|++||++....... ..+. ...++++++++||+|++|+|+|++|+++
T Consensus 155 ~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---------------~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~l 217 (323)
T PRK15409 155 RIGMALAQRA-HFGFNMPILYNARRHHKEAEE---------------RFNA-RYCDLDTLLQESDFVCIILPLTDETHHL 217 (323)
T ss_pred HHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---------------hcCc-EecCHHHHHHhCCEEEEeCCCChHHhhc
Confidence 9999999996 7 9999999999875332110 0011 2369999999999999999999999999
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCcccccccccccccccccc
Q 019387 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPK 323 (342)
Q Consensus 254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~ 323 (342)
||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++|| ||+++|||+|+.|.+.. .
T Consensus 218 i~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~--~ 295 (323)
T PRK15409 218 FGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETR--Y 295 (323)
T ss_pred cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHH--H
Confidence 99999999999999999999999999999999999999999999999998 79999999999998865 6
Q ss_pred ccCchhhcccccccc
Q 019387 324 LTREWPIYDNSCCIR 338 (342)
Q Consensus 324 ~~~~~~~~~~~~~~~ 338 (342)
.+.+..++|...+++
T Consensus 296 ~~~~~~~~ni~~~~~ 310 (323)
T PRK15409 296 NMAACAVDNLIDALQ 310 (323)
T ss_pred HHHHHHHHHHHHHHc
Confidence 777888888877764
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-63 Score=472.95 Aligned_cols=289 Identities=27% Similarity=0.378 Sum_probs=246.1
Q ss_pred EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387 17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (342)
Q Consensus 17 ~vl~~~~--~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~ 94 (342)
||++..+ +++ ..++.|++.+ ++.... ..+++++.+.+.+ +|+++++ ..++++++++++|++ |+|++.|
T Consensus 2 ki~~~~~~~~~~-~~~~~l~~~~-~~~~~~----~~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~ 71 (311)
T PRK08410 2 KIVILDAKTLGD-KDLSVFEEFG-DFQIYP----TTSPEEVIERIKD-ANIIITN-KVVIDKEVLSQLPNL--KLICITA 71 (311)
T ss_pred eEEEEecCCCCh-hhHHHHhhCc-eEEEeC----CCCHHHHHHHhCC-CCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence 4554444 443 3456776653 665432 1256788888875 9999886 457999999999987 9999999
Q ss_pred ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCc---ccccccCCCeEEEE
Q 019387 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI 171 (342)
Q Consensus 95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~---~~~~~L~gktvgIv 171 (342)
+|+|+||+++|+++||.|+|+|++++++||||+++++|+++|++..+++.+++|.|..+.... ..+++|+|||||||
T Consensus 72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi 151 (311)
T PRK08410 72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII 151 (311)
T ss_pred cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999987542211 12478999999999
Q ss_pred ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (342)
Q Consensus 172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~ 251 (342)
|+|+||+++|+++ ++|||+|++||++.... ...+ ...+|++++++||+|++|+|+|++|+
T Consensus 152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~------------------~~~~-~~~~l~ell~~sDvv~lh~Plt~~T~ 211 (311)
T PRK08410 152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNK------------------NEEY-ERVSLEELLKTSDIISIHAPLNEKTK 211 (311)
T ss_pred CCCHHHHHHHHHH-hhcCCEEEEECCCcccc------------------ccCc-eeecHHHHhhcCCEEEEeCCCCchhh
Confidence 9999999999996 89999999999975321 0011 24689999999999999999999999
Q ss_pred cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-------------CCccccccccccccc
Q 019387 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-------------LGFSSFKHISTQDRA 318 (342)
Q Consensus 252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-------------~~~~~tPhia~~~~~ 318 (342)
|+||++.|++||||++|||+|||++||++||++||++|+|+ ||||||++|| ||+++|||+|++|.+
T Consensus 212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e 290 (311)
T PRK08410 212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE 290 (311)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999 9999999999 489999999999988
Q ss_pred cccccccCchhhcccccccc
Q 019387 319 TSCPKLTREWPIYDNSCCIR 338 (342)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~ 338 (342)
.. ..+.++.++|...+++
T Consensus 291 ~~--~~~~~~~~~nl~~~~~ 308 (311)
T PRK08410 291 AR--KTLIEKVKENIKDFLE 308 (311)
T ss_pred HH--HHHHHHHHHHHHHHHc
Confidence 65 7778888888877764
No 6
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-62 Score=482.49 Aligned_cols=299 Identities=27% Similarity=0.318 Sum_probs=260.5
Q ss_pred EeCCCCceEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCC
Q 019387 9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG 87 (342)
Q Consensus 9 ~~~~~~~~~vl~~~~~~~~~~~~~l~~~~~-~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~ 87 (342)
++.|+.+|+|+++.+++++ ..+.|++.++ ++.... ...+++++.+.+.+ +|+++.....++++++++++|+|
T Consensus 4 ~~~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L-- 76 (409)
T PRK11790 4 VSLPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIKD-AHFIGIRSRTQLTEEVLAAAEKL-- 76 (409)
T ss_pred CCCCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcCC-CCEEEEeCCCCCCHHHHhhCCCC--
Confidence 5678999999999888764 4677877666 776432 23577888888875 99988776668999999999987
Q ss_pred ceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCe
Q 019387 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167 (342)
Q Consensus 88 k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gkt 167 (342)
|+|++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|..+. ..|.+|.|||
T Consensus 77 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~---~~~~~L~gkt 153 (409)
T PRK11790 77 VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA---AGSFEVRGKT 153 (409)
T ss_pred eEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc---cCcccCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999886432 3468999999
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019387 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (342)
Q Consensus 168 vgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~ 247 (342)
|||||+|+||+.+|+++ ++|||+|++||+++.... .......+|++++++||+|++|+|+|
T Consensus 154 vGIiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~------------------~~~~~~~~l~ell~~sDiVslh~Plt 214 (409)
T PRK11790 154 LGIVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL------------------GNARQVGSLEELLAQSDVVSLHVPET 214 (409)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEECCCccccc------------------CCceecCCHHHHHhhCCEEEEcCCCC
Confidence 99999999999999996 899999999998643210 01123468999999999999999999
Q ss_pred cccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--------------CCcccccccc
Q 019387 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--------------LGFSSFKHIS 313 (342)
Q Consensus 248 ~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--------------~~~~~tPhia 313 (342)
++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++|| ||+++|||+|
T Consensus 215 ~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia 294 (409)
T PRK11790 215 PSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIG 294 (409)
T ss_pred hHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCC
Confidence 99999999999999999999999999999999999999999999999999999997 6899999999
Q ss_pred ccccccccccccCchhhcccccccc
Q 019387 314 TQDRATSCPKLTREWPIYDNSCCIR 338 (342)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
++|.+.. ..+.++.++|...+++
T Consensus 295 ~~t~ea~--~~~~~~~~~nl~~~~~ 317 (409)
T PRK11790 295 GSTQEAQ--ENIGLEVAGKLVKYSD 317 (409)
T ss_pred CCHHHHH--HHHHHHHHHHHHHHHc
Confidence 9998855 6677788888766653
No 7
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1e-62 Score=468.73 Aligned_cols=277 Identities=26% Similarity=0.313 Sum_probs=241.2
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCC
Q 019387 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109 (342)
Q Consensus 30 ~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~g 109 (342)
.+.|++..++++... ..+.+++.+.+.+ +|+++.+ ..++++++++++|++ |+|++.|+|+|+||+++++++|
T Consensus 18 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g 89 (317)
T PRK06487 18 LSPLEQAFDELQLHD----ATTPEQVAERLRG-AQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG 89 (317)
T ss_pred hhHHHhhCCeEEEec----CCCHHHHHHHhCC-CeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence 456665555665432 2356888888875 9998876 347899999999987 9999999999999999999999
Q ss_pred eeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC---cccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (342)
Q Consensus 110 I~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~---~~~~~~L~gktvgIvG~G~IG~~vA~~l~~ 186 (342)
|.|+|+|++++.+||||++++||+++|++..+++.+++|.|..|... ...+.+|+||||||||+|+||+.+|+++ +
T Consensus 90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~ 168 (317)
T PRK06487 90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E 168 (317)
T ss_pred CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence 99999999999999999999999999999999999999999765321 1235689999999999999999999996 8
Q ss_pred cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCc
Q 019387 187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266 (342)
Q Consensus 187 afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga 266 (342)
+|||+|++||++.... . ....+|++++++||+|++|+|+|++|+|+||++.|++||+|+
T Consensus 169 ~fgm~V~~~~~~~~~~------------------~---~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga 227 (317)
T PRK06487 169 AFGMRVLIGQLPGRPA------------------R---PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227 (317)
T ss_pred hCCCEEEEECCCCCcc------------------c---ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence 9999999999864210 0 023589999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC------------CCccccccccccccccccccccCchhhcccc
Q 019387 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE------------LGFSSFKHISTQDRATSCPKLTREWPIYDNS 334 (342)
Q Consensus 267 ~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP------------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~ 334 (342)
+|||+|||++||++||++||++|+|+||+||||++|| ||+++|||+|++|.+.. ..+.++.++|..
T Consensus 228 ~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~--~~~~~~~~~ni~ 305 (317)
T PRK06487 228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREAR--QRIVGQLAENAR 305 (317)
T ss_pred EEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHH--HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 58899999999998865 777788888877
Q ss_pred cccc
Q 019387 335 CCIR 338 (342)
Q Consensus 335 ~~~~ 338 (342)
.+++
T Consensus 306 ~~~~ 309 (317)
T PRK06487 306 AFFA 309 (317)
T ss_pred HHHc
Confidence 7654
No 8
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-63 Score=453.70 Aligned_cols=277 Identities=32% Similarity=0.479 Sum_probs=251.3
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcccc
Q 019387 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (342)
Q Consensus 17 ~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G 96 (342)
+||++.++.... ++.|++.++++++.. .++.||+...+++ +|++++++.+++++++|+.... ++|+|++.|+|
T Consensus 8 ~il~~e~~~~~~-~~~l~~~g~~v~~~~----~~~~eel~~~i~~-~~aviVrs~tkvtadvl~aa~~-~lkvVgrag~G 80 (406)
T KOG0068|consen 8 KILVAESLDQAC-IEILKDNGYQVEFKK----NLSLEELIEKIKD-CDALIVRSKTKVTADVLEAAAG-GLKVVGRAGIG 80 (406)
T ss_pred eEEEecccchHH-HHHHHhcCceEEEec----cCCHHHHHHHhcc-CCEEEEEeCCeecHHHHHhhcC-CeEEEEecccC
Confidence 799999999864 899999999998643 3578899999985 9999999999999999985333 46999999999
Q ss_pred CCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHH
Q 019387 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (342)
Q Consensus 97 ~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~I 176 (342)
+||+|++++.++||.|+|+|.+|+.++||+++++++++.|+++++...+|+|.|.+ ..+.|.+|+|||+||+|+|+|
T Consensus 81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr---~~~~G~el~GKTLgvlG~GrI 157 (406)
T KOG0068|consen 81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR---VKYLGWELRGKTLGVLGLGRI 157 (406)
T ss_pred ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee---cceeeeEEeccEEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999998764 557899999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019387 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (342)
Q Consensus 177 G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~ 256 (342)
|+++|+++ +++||+|++||+........ ..+ + ...+++|+++.||||++|+|++|+|++++|+
T Consensus 158 GseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a~g-----v-q~vsl~Eil~~ADFitlH~PLtP~T~~lin~ 220 (406)
T KOG0068|consen 158 GSEVAVRA-KAMGMHVIGYDPITPMALAE----------AFG-----V-QLVSLEEILPKADFITLHVPLTPSTEKLLND 220 (406)
T ss_pred hHHHHHHH-HhcCceEEeecCCCchHHHH----------hcc-----c-eeeeHHHHHhhcCEEEEccCCCcchhhccCH
Confidence 99999996 99999999999987543211 111 1 2469999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC------------CCccccccccccccccc
Q 019387 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE------------LGFSSFKHISTQDRATS 320 (342)
Q Consensus 257 ~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP------------~~~~~tPhia~~~~~~~ 320 (342)
+.|++||+|..+||++||++||+.||++||++|+++|||+|||+.|| ||++.|||+++.|.|..
T Consensus 221 ~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq 296 (406)
T KOG0068|consen 221 ETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQ 296 (406)
T ss_pred HHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHH
Confidence 99999999999999999999999999999999999999999999999 78999999999998764
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-62 Score=466.70 Aligned_cols=262 Identities=27% Similarity=0.343 Sum_probs=233.1
Q ss_pred CCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHH
Q 019387 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS 129 (342)
Q Consensus 50 ~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~ 129 (342)
.+++++.+.+.+ +|++++. ..++++++++++|+| |+|++.|+|+|+||+++|+++||.|+|+|++++.+||||+++
T Consensus 33 ~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~ 108 (314)
T PRK06932 33 TSAEQTIERAKD-ADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG 108 (314)
T ss_pred CChHHHHHHhCC-CcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence 367888888875 9988875 457899999999987 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHcCCCCCCCCC---cccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH
Q 019387 130 LSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (342)
Q Consensus 130 ~~L~~~R~~~~~~~~~~~g~w~~w~~~---~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~ 206 (342)
++|++.|+++.+++.+++|.|..+... ...+.+|+||||||||+|+||+++|+++ ++|||+|++||++....
T Consensus 109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~---- 183 (314)
T PRK06932 109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASV---- 183 (314)
T ss_pred HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCcccc----
Confidence 999999999999999999998754221 1234689999999999999999999996 89999999999754210
Q ss_pred HhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (342)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL 286 (342)
. .....+|++++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++||++||++||
T Consensus 184 ---------------~-~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL 247 (314)
T PRK06932 184 ---------------C-REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL 247 (314)
T ss_pred ---------------c-ccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence 0 002368999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEEecCCCCC--------------CCccccccccccccccccccccCchhhcccccccc
Q 019387 287 KQNPMFRVGLDVFEVTE--------------LGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIR 338 (342)
Q Consensus 287 ~~g~i~~aaLDV~~~EP--------------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
++|+|+||+||||++|| ||+++|||+|++|.+.. ..+.++.++|...+++
T Consensus 248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~--~~~~~~~~~ni~~~~~ 311 (314)
T PRK06932 248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAV--TTLVNKVAQNIEEFVQ 311 (314)
T ss_pred HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHH--HHHHHHHHHHHHHHHh
Confidence 99999999999999999 57899999999998855 7788888888877664
No 10
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=2.5e-61 Score=462.20 Aligned_cols=299 Identities=40% Similarity=0.593 Sum_probs=255.4
Q ss_pred ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (342)
Q Consensus 15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~ 94 (342)
+++|+++.++++ ..++.|++. +++.... .....+.+++.+.+.+ +|++++....++++++++++|+| |+|++.|
T Consensus 2 ~~kil~~~~~~~-~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~~ 75 (333)
T PRK13243 2 KPKVFITREIPE-NGIEMLEEH-FEVEVWE-DEREIPREVLLEKVRD-VDALVTMLSERIDCEVFEAAPRL--RIVANYA 75 (333)
T ss_pred CceEEEECCCCH-HHHHHHhcC-ceEEEec-CCCCCCHHHHHHHhCC-CcEEEEeCCCCCCHHHHhhCCCC--eEEEecC
Confidence 467888887765 346677664 4665432 2223467888888875 99999876668999999999987 9999999
Q ss_pred ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCC----CCCCcccccccCCCeEEE
Q 019387 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVGV 170 (342)
Q Consensus 95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~----w~~~~~~~~~L~gktvgI 170 (342)
+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|.. |......|.+|+||||||
T Consensus 76 ~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI 155 (333)
T PRK13243 76 VGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI 155 (333)
T ss_pred ccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999864 222223568999999999
Q ss_pred EecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019387 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250 (342)
Q Consensus 171 vG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t 250 (342)
||+|+||+.+|++| ++|||+|++||+++...... . .++ ...++++++++||+|++|+|+|++|
T Consensus 156 iG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~------------~~~-~~~~l~ell~~aDiV~l~lP~t~~T 218 (333)
T PRK13243 156 IGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK---E------------LGA-EYRPLEELLRESDFVSLHVPLTKET 218 (333)
T ss_pred ECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH---H------------cCC-EecCHHHHHhhCCEEEEeCCCChHH
Confidence 99999999999997 79999999999986432110 0 011 2358999999999999999999999
Q ss_pred ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCcccccccccccccccc
Q 019387 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSC 321 (342)
Q Consensus 251 ~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~ 321 (342)
+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++|| ||+++|||+|++|.+..
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~- 297 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAR- 297 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHH-
Confidence 99999999999999999999999999999999999999999999999999999 79999999999998865
Q ss_pred ccccCchhhcccccccc
Q 019387 322 PKLTREWPIYDNSCCIR 338 (342)
Q Consensus 322 ~~~~~~~~~~~~~~~~~ 338 (342)
..+.++.++|...+++
T Consensus 298 -~~~~~~~~~ni~~~~~ 313 (333)
T PRK13243 298 -EGMAELVAENLIAFKR 313 (333)
T ss_pred -HHHHHHHHHHHHHHHc
Confidence 6677778888776654
No 11
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-59 Score=455.04 Aligned_cols=285 Identities=24% Similarity=0.257 Sum_probs=247.3
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHHhC
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY 108 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~--~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~ 108 (342)
+.|++.++++.+.. +...+.+++.+.+.+ +|++++.. ..++++++++++|+| |+|++.|+|+|+||+++|.++
T Consensus 62 ~~l~~~g~e~~~~~--~~~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~~ 136 (385)
T PRK07574 62 KFLEERGHELVVTS--DKDGPDSDFEKELPD-ADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASEH 136 (385)
T ss_pred HHHHhcCcEEEEeC--CCCCCHHHHHHHcCC-CeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHHC
Confidence 56778888887653 334577888888875 99999863 357899999999987 999999999999999999999
Q ss_pred CeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC
Q 019387 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (342)
Q Consensus 109 gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af 188 (342)
||.|+|++++|+.+||||++++||++.|++..+++.+++|.|..+.. ...+++|+|+||||||+|+||+.+|++| ++|
T Consensus 137 gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~f 214 (385)
T PRK07574 137 GITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPF 214 (385)
T ss_pred CcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEECCCHHHHHHHHHH-HhC
Confidence 99999999999999999999999999999999999999999875321 1246789999999999999999999997 799
Q ss_pred CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEE
Q 019387 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268 (342)
Q Consensus 189 g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~l 268 (342)
||+|++||++....... . ..+.....++++++++||+|++|+|+|++|+++||++.|++||+|++|
T Consensus 215 G~~V~~~dr~~~~~~~~--~------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l 280 (385)
T PRK07574 215 DVKLHYTDRHRLPEEVE--Q------------ELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYL 280 (385)
T ss_pred CCEEEEECCCCCchhhH--h------------hcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEE
Confidence 99999999986321100 0 011223468999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccccccccccccccCchhhcccccccc
Q 019387 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIR 338 (342)
Q Consensus 269 INvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
||+|||++||++||++||++|+|+|||||||++|| ||+++|||+|+.|.+.. ..+.+..++|..++++
T Consensus 281 IN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~--~~~~~~~~~ni~~~~~ 358 (385)
T PRK07574 281 VNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQ--ARYAAGTREILECFFE 358 (385)
T ss_pred EECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHH--HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999 79999999999998865 6677788888877754
No 12
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-59 Score=454.27 Aligned_cols=285 Identities=21% Similarity=0.221 Sum_probs=246.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHHhC
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY 108 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~--~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~ 108 (342)
+.|++.++++.+... ...+.+++.+.+.+ +|++|+.. ..++++++++++|+| |+|++.|+|+||||+++|.++
T Consensus 69 ~~l~~~g~~~v~~~~--~~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~~~ 143 (386)
T PLN03139 69 DWLESQGHQYIVTDD--KEGPDCELEKHIPD-LHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAAAA 143 (386)
T ss_pred HHHHhcCCeEEEeCC--CCCCHHHHHHHhCC-CeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHHHC
Confidence 567778888876543 23577888888885 99999864 246899999999988 999999999999999999999
Q ss_pred CeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC
Q 019387 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (342)
Q Consensus 109 gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af 188 (342)
||.|+|++|+|+.+||||++++||++.|++..+++.+++|.|... .....+++|.||||||||+|+||+.+|++| ++|
T Consensus 144 gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~af 221 (386)
T PLN03139 144 GLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KPF 221 (386)
T ss_pred CeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEeecHHHHHHHHHH-HHC
Confidence 999999999999999999999999999999999999999988631 112346799999999999999999999997 799
Q ss_pred CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEE
Q 019387 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268 (342)
Q Consensus 189 g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~l 268 (342)
||+|++||++....... . ..++....++++++++||+|++|+|++++|+++||++.|++||+|++|
T Consensus 222 G~~V~~~d~~~~~~~~~--~------------~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l 287 (386)
T PLN03139 222 NCNLLYHDRLKMDPELE--K------------ETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLI 287 (386)
T ss_pred CCEEEEECCCCcchhhH--h------------hcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEE
Confidence 99999999875321100 0 011223468999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccccccccccccccCchhhcccccccc
Q 019387 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIR 338 (342)
Q Consensus 269 INvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
||+|||++||++||++||++|+|+||+||||++|| ||+++|||+|+.|.+.. ..+.+..++|..+|++
T Consensus 288 IN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~--~r~~~~~~~nl~~~~~ 365 (386)
T PLN03139 288 VNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQ--LRYAAGVKDMLDRYFK 365 (386)
T ss_pred EECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHH--HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999 79999999999998855 6777778888877753
No 13
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=5.5e-59 Score=447.86 Aligned_cols=305 Identities=23% Similarity=0.238 Sum_probs=248.4
Q ss_pred CCCCceEEEEeCCCCchH--H-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCC
Q 019387 11 NPNGKYRVVSTKPMPGTR--W-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG 87 (342)
Q Consensus 11 ~~~~~~~vl~~~~~~~~~--~-~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~ 87 (342)
..+++++||++.+..+.. + .+.+++.+ .+. .. ..+.+++.+.+.+ +|+++++. .++++++++.+|++
T Consensus 14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~-~~----~~~~~e~~~~~~~-~d~~i~~~-~~~~~~~l~~~~~L-- 83 (347)
T PLN02928 14 SDMRPTRVLFCGPEFPASYSYTREYLQKYP-FIQ-VD----AVAREDVPDVIAN-YDICVPKM-MRLDADIIARASQM-- 83 (347)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHhhcCC-eeE-ec----CCCHHHHHHHhcC-CcEEEECC-CCCCHHHHhcCCCc--
Confidence 457888999997776632 2 24444333 222 22 1356788888875 99988763 47899999999987
Q ss_pred ceEEEccccCCccChhHHHhCCeeEecCCCC---CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccC
Q 019387 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLK 164 (342)
Q Consensus 88 k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~---~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~ 164 (342)
|+|++.++|+|++|++++.++||.|+|+|++ ++.+||||+++++|+++|++..+.+.+++|.|.. ..+.+|+
T Consensus 84 k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~ 158 (347)
T PLN02928 84 KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDTLF 158 (347)
T ss_pred eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccCCC
Confidence 9999999999999999999999999999985 7899999999999999999999999999998743 2467899
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCCEEEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aDiV~l 242 (342)
|||+||||+|+||+.+|+++ ++|||+|++||++.......... +....... .......+|++++++||+|++
T Consensus 159 gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGLL-----IPNGDVDDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred CCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhhc-----cccccccccccccCcccCHHHHHhhCCEEEE
Confidence 99999999999999999997 89999999999974321111000 00000000 000134699999999999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccc
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHI 312 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhi 312 (342)
|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++|| ||+++|||+
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHi 312 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHV 312 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999 799999999
Q ss_pred cccccccccccccCchhhcccccccc
Q 019387 313 STQDRATSCPKLTREWPIYDNSCCIR 338 (342)
Q Consensus 313 a~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
|++|.+.. ..+.++.++|...+++
T Consensus 313 a~~t~~~~--~~~~~~~~~nl~~~~~ 336 (347)
T PLN02928 313 AGVTEYSY--RSMGKIVGDAALQLHA 336 (347)
T ss_pred CCChHHHH--HHHHHHHHHHHHHHHC
Confidence 99998855 6677777888776653
No 14
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=1.2e-58 Score=467.69 Aligned_cols=293 Identities=33% Similarity=0.471 Sum_probs=253.3
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcccc
Q 019387 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (342)
Q Consensus 17 ~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G 96 (342)
||+++.++.++ .++.|++.++++... . ..+++++.+.+++ +|+++++..+++++++++++|+| |+|++.|+|
T Consensus 1 ~vli~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G 72 (525)
T TIGR01327 1 KVLIADPISPD-GIDILEDVGVEVDVQ--T--GLSREELLEIIPD-YDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG 72 (525)
T ss_pred CEEEeCCCCHH-HHHHHHhcCcEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence 47778777654 467787766777642 1 2467888888875 99999887678999999999987 999999999
Q ss_pred CCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHH
Q 019387 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (342)
Q Consensus 97 ~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~I 176 (342)
+|+||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|.|.++ .+.|.+|+||||||||+|+|
T Consensus 73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G~I 149 (525)
T TIGR01327 73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIGLGRI 149 (525)
T ss_pred cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999999988642 24578999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019387 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (342)
Q Consensus 177 G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~ 256 (342)
|+++|++| ++|||+|++||++....... ..++...+++++++++||+|++|+|+|++|+++||+
T Consensus 150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 150 GSIVAKRA-KAFGMKVLAYDPYISPERAE---------------QLGVELVDDLDELLARADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred HHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence 99999997 89999999999874321110 011222358999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCccccccccccccccccccccCc
Q 019387 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCPKLTRE 327 (342)
Q Consensus 257 ~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~~~~~~ 327 (342)
+.|++||+|++|||+|||++||++||++||++|+|+||+||||++|| ||+++|||+|+.|.+.. ..+.+
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~--~~~~~ 291 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQ--ENVAT 291 (525)
T ss_pred HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHH--HHHHH
Confidence 99999999999999999999999999999999999999999999999 89999999999998764 66667
Q ss_pred hhhcccccccc
Q 019387 328 WPIYDNSCCIR 338 (342)
Q Consensus 328 ~~~~~~~~~~~ 338 (342)
..++|...+++
T Consensus 292 ~~~~ni~~~~~ 302 (525)
T TIGR01327 292 QVAEQVLDALK 302 (525)
T ss_pred HHHHHHHHHHc
Confidence 77777766653
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-58 Score=439.57 Aligned_cols=295 Identities=26% Similarity=0.418 Sum_probs=249.3
Q ss_pred eEEEEe--CCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387 16 YRVVST--KPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (342)
Q Consensus 16 ~~vl~~--~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~ 93 (342)
|||++. ++...+-..+.+++.+.++... +..++.+. .+.+.+ +|++++...+++++++++++|+.++|+|++.
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~-~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~ 76 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTS---KELLSSAT-VDQLKD-YDGVTTMQFGKLENDVYPKLESYGIKQIAQR 76 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEc---CCCCCHHH-HHHhCC-CCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence 565554 4444333445566666566542 22355554 666664 9999987666899999999985455999999
Q ss_pred cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEec
Q 019387 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (342)
Q Consensus 94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~ 173 (342)
|+|+|+||+++|+++||.|+|+|++++++||||+++++|++.|+++.+++.+++|.|. |... ..+++|+|++|||||+
T Consensus 77 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~ 154 (330)
T PRK12480 77 TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGT 154 (330)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999874 5432 3468999999999999
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (342)
Q Consensus 174 G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l 253 (342)
|+||+.+|++| ++||++|++||+++..... + .....++++++++||+|++|+|++++|+++
T Consensus 155 G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 155 GRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYHL 215 (330)
T ss_pred CHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence 99999999997 7999999999998753211 0 012358999999999999999999999999
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-----------------------CCccccc
Q 019387 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-----------------------LGFSSFK 310 (342)
Q Consensus 254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-----------------------~~~~~tP 310 (342)
++++.|++||+|++|||+|||.+||++||++||++|+|+|||||||++|| ||+++||
T Consensus 216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 295 (330)
T PRK12480 216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP 295 (330)
T ss_pred HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence 99999999999999999999999999999999999999999999999997 3889999
Q ss_pred cccccccccccccccCchhhcccccccc
Q 019387 311 HISTQDRATSCPKLTREWPIYDNSCCIR 338 (342)
Q Consensus 311 hia~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
|+|++|.+.. ..+.+..++|...|++
T Consensus 296 Hia~~t~~~~--~~~~~~~~~n~~~~~~ 321 (330)
T PRK12480 296 HIAFFSDEAV--QNLVEGGLNAALSVIN 321 (330)
T ss_pred cccccHHHHH--HHHHHHHHHHHHHHHh
Confidence 9999999865 7788888888887765
No 16
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-58 Score=462.84 Aligned_cols=293 Identities=32% Similarity=0.450 Sum_probs=253.0
Q ss_pred eEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387 16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (342)
Q Consensus 16 ~~vl~~~~~~~~~~~~~l~~~-~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~ 94 (342)
|+|+++.++++. .++.|++. ++++... . ..+++++.+.+.+ +|+++++..+++++++++++|+| |+|++.|
T Consensus 1 m~ili~~~~~~~-~~~~l~~~~~~~v~~~--~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~ 72 (526)
T PRK13581 1 MKVLVSDPISPA-GLEILKDAPGVEVDVK--T--GLDKEELLEIIGD-YDALIVRSATKVTAEVLEAAKNL--KVIGRAG 72 (526)
T ss_pred CeEEEeCCCCHH-HHHHHhccCCeEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence 368888887754 46777665 4555432 1 2467888888875 99999887778999999999987 9999999
Q ss_pred ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC
Q 019387 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG 174 (342)
Q Consensus 95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G 174 (342)
+|+|+||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.++ .+.|.+|+||||||||+|
T Consensus 73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G 149 (526)
T PRK13581 73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIGLG 149 (526)
T ss_pred cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999998653 235789999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019387 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254 (342)
Q Consensus 175 ~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li 254 (342)
+||+.+|+++ ++|||+|++||++....... ..++.. .++++++++||+|++|+|+|++|+++|
T Consensus 150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li 212 (526)
T PRK13581 150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA---------------QLGVEL-VSLDELLARADFITLHTPLTPETRGLI 212 (526)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCc
Confidence 9999999997 89999999999975321110 011222 389999999999999999999999999
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCcccccccccccccccccccc
Q 019387 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCPKLT 325 (342)
Q Consensus 255 ~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~~~~ 325 (342)
+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++|| ||+++|||+|+.|.+.. ..+
T Consensus 213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~--~~~ 290 (526)
T PRK13581 213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQ--ENV 290 (526)
T ss_pred CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHH--HHH
Confidence 9999999999999999999999999999999999999999999999998 79999999999998865 667
Q ss_pred Cchhhcccccccc
Q 019387 326 REWPIYDNSCCIR 338 (342)
Q Consensus 326 ~~~~~~~~~~~~~ 338 (342)
.+..++|...+++
T Consensus 291 ~~~~~~ni~~~~~ 303 (526)
T PRK13581 291 AIQVAEQVIDALR 303 (526)
T ss_pred HHHHHHHHHHHHc
Confidence 7777888776654
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-57 Score=436.89 Aligned_cols=300 Identities=23% Similarity=0.387 Sum_probs=252.6
Q ss_pred CCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEE
Q 019387 13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92 (342)
Q Consensus 13 ~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~ 92 (342)
|++++|+++++.+.+ +++.+.+. +++++..... ..+ +|..+.+.+ +|++++...+++++++++++|++++|+|++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~-~e~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~ 75 (332)
T PRK08605 1 MTKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALT-DDNVEEVEG-FDGLSLSQQIPLSEAIYKLLNELGIKQIAQ 75 (332)
T ss_pred CcEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCC-HHHHHHhcC-CCEEEEecCCCCCHHHHHhhhhcCceEEEE
Confidence 456788888876654 45565443 2443322111 234 445566664 999988776789999999999866799999
Q ss_pred ccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEe
Q 019387 93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172 (342)
Q Consensus 93 ~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG 172 (342)
.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|+++|++..+++.+++|.|. |... ..+++|+|++|||||
T Consensus 76 ~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG 153 (332)
T PRK08605 76 RSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIG 153 (332)
T ss_pred cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999884 6542 346899999999999
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019387 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (342)
Q Consensus 173 ~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~ 252 (342)
+|+||+++|++|+++|||+|++||+++...... ......++++++++||+|++|+|++++|++
T Consensus 154 ~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~-----------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~ 216 (332)
T PRK08605 154 TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT-----------------YVDYKDTIEEAVEGADIVTLHMPATKYNHY 216 (332)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh-----------------hccccCCHHHHHHhCCEEEEeCCCCcchhh
Confidence 999999999997468999999999987542111 011235899999999999999999999999
Q ss_pred ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-----------------------CCcccc
Q 019387 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-----------------------LGFSSF 309 (342)
Q Consensus 253 li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-----------------------~~~~~t 309 (342)
+++++.|++||+|++|||++||.++|+++|+++|++|+|+||+||||+.|| ||+++|
T Consensus 217 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilT 296 (332)
T PRK08605 217 LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILT 296 (332)
T ss_pred hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEEC
Confidence 999999999999999999999999999999999999999999999999997 578999
Q ss_pred ccccccccccccccccCchhhcccccccc
Q 019387 310 KHISTQDRATSCPKLTREWPIYDNSCCIR 338 (342)
Q Consensus 310 Phia~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
||+|++|.+.. ..+.+..++|..++++
T Consensus 297 PHia~~t~e~~--~~~~~~~~~n~~~~~~ 323 (332)
T PRK08605 297 PHIAFYTDAAV--KNLIVDALDATLEVLQ 323 (332)
T ss_pred CcccccHHHHH--HHHHHHHHHHHHHHHc
Confidence 99999998865 7777888888877754
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.8e-56 Score=420.53 Aligned_cols=280 Identities=36% Similarity=0.488 Sum_probs=239.0
Q ss_pred CCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHh-hccCCceEEEccccCCccChhHHHhCCeeEec
Q 019387 36 QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGN 114 (342)
Q Consensus 36 ~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l-~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n 114 (342)
.+++.......+..++..++...+.+...++.+.....++.+.+.++ |++ |+|+++|+|+||||+++|+++||+|+|
T Consensus 35 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~V~n 112 (336)
T KOG0069|consen 35 QGYQLREEFLKEPKLIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIRVAN 112 (336)
T ss_pred ccccceehhccccccchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCceEec
Confidence 34444444444445566666766665456666666677888888776 776 999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEE
Q 019387 115 TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194 (342)
Q Consensus 115 ~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~ 194 (342)
+|+.++.+|||++++++|.+.|++..+++++++|.| .|......|..+.||||||+|+|+||+.+|++| ++||+.+.|
T Consensus 113 vp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~i~y 190 (336)
T KOG0069|consen 113 VPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCVILY 190 (336)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccceeee
Confidence 999999999999999999999999999999999999 788777788999999999999999999999998 899988999
Q ss_pred EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
+++++....+. .+. .....++++++.+||+|++|||+|++|+|+||++.|.+||+|++|||++||
T Consensus 191 ~~r~~~~~~~~-~~~--------------~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG 255 (336)
T KOG0069|consen 191 HSRTQLPPEEA-YEY--------------YAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARG 255 (336)
T ss_pred ecccCCchhhH-HHh--------------cccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccc
Confidence 88876532111 111 011369999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHcCCceEEEEecCCCCC---------CCccccccccccccccccccccCchhhcccccc
Q 019387 275 PVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCPKLTREWPIYDNSCC 336 (342)
Q Consensus 275 ~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~~ 336 (342)
.++|++++++||++|+|.+|+||||++|| .|+.++||++++|-++- ..|.+.++.|..+.
T Consensus 256 ~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~--~~m~~~v~~n~~~~ 324 (336)
T KOG0069|consen 256 AIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETR--EKMAEIVLNNLLAF 324 (336)
T ss_pred ccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHH--HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 68999999999998765 66677777666543
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=1.6e-54 Score=418.15 Aligned_cols=266 Identities=26% Similarity=0.341 Sum_probs=221.4
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (342)
Q Consensus 16 ~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~ 95 (342)
||||+...++. ..+.+.+. .++.... ....+.++ +. ++|+++++..+++++++++ .+++ |+|++.++
T Consensus 1 mkIl~d~~~~~--~~~~~~~~-~ev~~~~--~~~~~~~~----l~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~ 67 (378)
T PRK15438 1 MKILVDENMPY--ARELFSRL-GEVKAVP--GRPIPVAQ----LA-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA 67 (378)
T ss_pred CEEEEeCCcch--HHHHHhhc-CcEEEeC--CCCCCHHH----hC-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence 57888877652 24556554 4776543 33455555 33 4999999877789999885 5765 99999999
Q ss_pred cCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH
Q 019387 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (342)
Q Consensus 96 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~ 175 (342)
|+||||+++++++||.|+|+||+|+.+||||+++++|++.|+. |.+|.||||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~ 126 (378)
T PRK15438 68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN 126 (378)
T ss_pred cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999852 2479999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcc----cc
Q 019387 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY 251 (342)
Q Consensus 176 IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~----t~ 251 (342)
||+.+|++| ++|||+|++||+..... +. . ....+|++++++||+|++|+|+|++ |+
T Consensus 127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~~---~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 127 VGRRLQARL-EALGIKTLLCDPPRADR---------------GD---E-GDFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc---------------cc---c-cccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 999999997 89999999999754211 00 0 1246899999999999999999996 99
Q ss_pred cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-------CCc-ccccccccccccccccc
Q 019387 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-------LGF-SSFKHISTQDRATSCPK 323 (342)
Q Consensus 252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-------~~~-~~tPhia~~~~~~~~~~ 323 (342)
|+||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++|| +++ ++|||||++|.+.. .
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e~~--~ 264 (378)
T PRK15438 187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLEGK--A 264 (378)
T ss_pred cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHHHH--H
Confidence 9999999999999999999999999999999999999999999999999999 344 89999999997754 4
Q ss_pred ccCchhhccccccc
Q 019387 324 LTREWPIYDNSCCI 337 (342)
Q Consensus 324 ~~~~~~~~~~~~~~ 337 (342)
.+..+..+|...++
T Consensus 265 ~~~~~~~~~l~~~~ 278 (378)
T PRK15438 265 RGTTQVFEAYSKFI 278 (378)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666554443
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.5e-53 Score=412.44 Aligned_cols=267 Identities=24% Similarity=0.303 Sum_probs=222.4
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (342)
Q Consensus 16 ~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~ 95 (342)
|||++...++- ..+.+.+. .++.... ....+.+ .+. ++|+++++..+++++++++ .+++ |+|++.++
T Consensus 1 mkI~~d~~~p~--~~~~~~~~-~~v~~~~--~~~~~~~----~l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~ 67 (381)
T PRK00257 1 MKIVADENIPL--LDAFFAGF-GEIRRLP--GRAFDRA----AVR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI 67 (381)
T ss_pred CEEEEecCchh--HHHHHhhC-CcEEEcC--CcccCHH----HhC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence 68999887753 13444444 4666543 2233433 344 4999998877789999987 4655 99999999
Q ss_pred cCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH
Q 019387 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (342)
Q Consensus 96 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~ 175 (342)
|+||||+++++++||.|+|+||+|+.+||||+++++|++.|+ .|.+|.||||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~ 126 (381)
T PRK00257 68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH 126 (381)
T ss_pred cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence 999999999999999999999999999999999999999874 13579999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCc----ccc
Q 019387 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY 251 (342)
Q Consensus 176 IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~----~t~ 251 (342)
||+.+|+++ ++|||+|++||+..... .+ .....++++++++||+|++|+|+|+ +|+
T Consensus 127 IG~~va~~l-~a~G~~V~~~Dp~~~~~--------------~~-----~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~ 186 (381)
T PRK00257 127 VGGRLVRVL-RGLGWKVLVCDPPRQEA--------------EG-----DGDFVSLERILEECDVISLHTPLTKEGEHPTR 186 (381)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc--------------cc-----CccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence 999999997 79999999999854321 00 0123689999999999999999999 599
Q ss_pred cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--------CCcccccccccccccccccc
Q 019387 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--------LGFSSFKHISTQDRATSCPK 323 (342)
Q Consensus 252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--------~~~~~tPhia~~~~~~~~~~ 323 (342)
|+||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++|| +|+++|||+|++|.+.. .
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~~--~ 264 (381)
T PRK00257 187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGK--A 264 (381)
T ss_pred ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHHH--H
Confidence 9999999999999999999999999999999999999999999999999999 58899999999998754 4
Q ss_pred ccCchhhcccccccc
Q 019387 324 LTREWPIYDNSCCIR 338 (342)
Q Consensus 324 ~~~~~~~~~~~~~~~ 338 (342)
.+.++.++|...++.
T Consensus 265 r~~~~~~~nl~~~~~ 279 (381)
T PRK00257 265 RGTAQIYQALCRFFG 279 (381)
T ss_pred HHHHHHHHHHHHHHc
Confidence 555666666655543
No 21
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3e-53 Score=400.38 Aligned_cols=239 Identities=19% Similarity=0.268 Sum_probs=203.5
Q ss_pred CceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHH
Q 019387 62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA 141 (342)
Q Consensus 62 ~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~ 141 (342)
++|+++...+ ....+++ |+|++.|+|+|+||+++|+++||.++|. +.++.+||||+++++|++.|+++.+
T Consensus 34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~ 103 (303)
T PRK06436 34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICEN 103 (303)
T ss_pred CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHH
Confidence 4787754422 1224555 9999999999999999999998888775 7899999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC
Q 019387 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 142 ~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (342)
++.+++|.|..+ .+++|+||||||||+|+||+++|+++ ++|||+|++||++.... +..
T Consensus 104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~- 161 (303)
T PRK06436 104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS- 161 (303)
T ss_pred HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc-
Confidence 999999988642 35789999999999999999999986 89999999999875321 100
Q ss_pred ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301 (342)
Q Consensus 222 ~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~ 301 (342)
....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|++.+|+||||++
T Consensus 162 ---~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~ 238 (303)
T PRK06436 162 ---SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN 238 (303)
T ss_pred ---cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence 01368999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-------CCccccccccc-cccccccccccCchhhccccccc
Q 019387 302 TE-------LGFSSFKHIST-QDRATSCPKLTREWPIYDNSCCI 337 (342)
Q Consensus 302 EP-------~~~~~tPhia~-~~~~~~~~~~~~~~~~~~~~~~~ 337 (342)
|| ||+++|||+++ .|.+.. ..+.+..++|...++
T Consensus 239 EP~~~~~~~~nviiTPHi~g~~t~e~~--~~~~~~~~~ni~~~~ 280 (303)
T PRK06436 239 EPIITETNPDNVILSPHVAGGMSGEIM--QPAVALAFENIKNFF 280 (303)
T ss_pred CCCCccCCCCCEEECCccccccCHHHH--HHHHHHHHHHHHHHH
Confidence 99 79999999875 665533 444556666665554
No 22
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=3.7e-53 Score=401.79 Aligned_cols=279 Identities=17% Similarity=0.166 Sum_probs=222.6
Q ss_pred EEEEeC-CCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387 17 RVVSTK-PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (342)
Q Consensus 17 ~vl~~~-~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~ 95 (342)
.|++.. ....+.|.+.|++..++.++....+ ++ .. ++|+++++.. +.++++ .+++ |+|++.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~~-~a~~~~~~~~---~~~~l~-~~~L--k~I~~~~a 65 (312)
T PRK15469 2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-----GD----ND-PADYALVWHP---PVEMLA-GRDL--KAVFALGA 65 (312)
T ss_pred EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-----CC----Cc-cCeEEEEeCC---ChHHhc-cCCc--eEEEEccc
Confidence 344433 3355558888888655554422111 11 12 4898888743 456664 4665 99999999
Q ss_pred cCCccChhH-----HHhCCeeEecCCC-CCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEE
Q 019387 96 GYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169 (342)
Q Consensus 96 G~d~id~~~-----~~~~gI~V~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvg 169 (342)
|+|++|... +..+||.|+|+++ .++.+||||+++++|++.|+++.+.+.+++|.|..+ .+.+++|||||
T Consensus 66 G~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~tvg 140 (312)
T PRK15469 66 GVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFTIG 140 (312)
T ss_pred ccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCEEE
Confidence 999998322 3458999999865 689999999999999999999999999999988642 24679999999
Q ss_pred EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcc
Q 019387 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (342)
Q Consensus 170 IvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~ 249 (342)
|||+|+||+.+|++| ++|||+|++||++++... +. ..+....++++++++||+|++|+|+|++
T Consensus 141 IvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~--~~~~~~~~l~e~l~~aDvvv~~lPlt~~ 203 (312)
T PRK15469 141 ILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GV--QSFAGREELSAFLSQTRVLINLLPNTPE 203 (312)
T ss_pred EECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cc--eeecccccHHHHHhcCCEEEECCCCCHH
Confidence 999999999999997 799999999998754210 00 0111246899999999999999999999
Q ss_pred cccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCcccccccccccccc
Q 019387 250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRAT 319 (342)
Q Consensus 250 t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~ 319 (342)
|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++|| ||+++|||+|+.|.+.
T Consensus 204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~ 283 (312)
T PRK15469 204 TVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA 283 (312)
T ss_pred HHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999763
Q ss_pred ccccccCchhhccccccc
Q 019387 320 SCPKLTREWPIYDNSCCI 337 (342)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ 337 (342)
.+..+..+|...+.
T Consensus 284 ----~~~~~~~~n~~~~~ 297 (312)
T PRK15469 284 ----EAVEYISRTIAQLE 297 (312)
T ss_pred ----HHHHHHHHHHHHHH
Confidence 24455566655544
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=5.9e-46 Score=326.34 Aligned_cols=168 Identities=40% Similarity=0.505 Sum_probs=143.9
Q ss_pred HHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHH
Q 019387 128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207 (342)
Q Consensus 128 l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~ 207 (342)
++++|++.|+++.+++.+++|.| |......+++|+|+||||||+|+||+.+|+++ ++|||+|++||++.........
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~~~ 77 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGADE 77 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHHHH
T ss_pred ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhccc
Confidence 58999999999999999999998 22333567899999999999999999999997 8999999999999875431100
Q ss_pred hhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
..+ ...++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus 78 --------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 78 --------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp --------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred --------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 011 34799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEecCCCCC----------CCcccccccc
Q 019387 288 QNPMFRVGLDVFEVTE----------LGFSSFKHIS 313 (342)
Q Consensus 288 ~g~i~~aaLDV~~~EP----------~~~~~tPhia 313 (342)
+|+++||+||||++|| ||+++|||+|
T Consensus 143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 9999999999999999 8999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.97 E-value=2.5e-31 Score=248.08 Aligned_cols=261 Identities=26% Similarity=0.338 Sum_probs=218.1
Q ss_pred CCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHH
Q 019387 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS 129 (342)
Q Consensus 50 ~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~ 129 (342)
++.+|+.+.+-..+-+-....+..++++.+++.+.+ +++.+.|.|+|++|+.+|.+-||.|||.|+...+.+|+.++.
T Consensus 61 qstqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~ 138 (435)
T KOG0067|consen 61 QSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLC 138 (435)
T ss_pred cchHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHH
Confidence 467788775543343333344456788888888877 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHcCCCCC-CCCC---cccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH
Q 019387 130 LSLAAARRIVEADEFMRAGLYDG-WLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205 (342)
Q Consensus 130 ~~L~~~R~~~~~~~~~~~g~w~~-w~~~---~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~ 205 (342)
++|.++|+.....+.+++|.|.. |... ......++|.++|++|+|++|+.++.+ |++||..|+.||++....+++
T Consensus 139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~ 217 (435)
T KOG0067|consen 139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDK 217 (435)
T ss_pred HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhh
Confidence 99999999999999999998853 2211 112356889999999999999999999 699999999999998766554
Q ss_pred HHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 019387 206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285 (342)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~a 285 (342)
++ +.....++++++.++|.+++||.++++++++|+...+++|++|++++|++||.++|+++|.+|
T Consensus 218 ~l---------------g~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqa 282 (435)
T KOG0067|consen 218 SL---------------GLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQA 282 (435)
T ss_pred hc---------------ccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhh
Confidence 32 333456799999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEEecCCCCC----CCccccccccccccccccccccCchhh
Q 019387 286 LKQNPMFRVGLDVFEVTE----LGFSSFKHISTQDRATSCPKLTREWPI 330 (342)
Q Consensus 286 L~~g~i~~aaLDV~~~EP----~~~~~tPhia~~~~~~~~~~~~~~~~~ 330 (342)
|++|++.+++=.-|.+-| ||.+-+||.++++...+ ..+++..+
T Consensus 283 Lk~G~i~~aa~~~~~~~~l~d~pn~ic~~~ta~~~e~~~--~e~re~aa 329 (435)
T KOG0067|consen 283 LKSGRIRGAAPRSFKQGPLKDAPNLICTPHTAWYSEAAS--VELREVAA 329 (435)
T ss_pred hccCceecccCcccccccccCCCCCCCCcccchhhHHHH--HHHHHHHh
Confidence 999999999933355556 99999999998876544 44444433
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.88 E-value=8.7e-22 Score=193.91 Aligned_cols=167 Identities=19% Similarity=0.308 Sum_probs=133.4
Q ss_pred ccccCCccC-hhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEE
Q 019387 93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171 (342)
Q Consensus 93 ~~~G~d~id-~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIv 171 (342)
.++|+..+- .+.....||+|+|+|+.++.+++|+++++++++.. ..+|.+ +..+.||+++|+
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d------~~~R~~-----------~~~LaGKtVgVI 260 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID------GIFRAT-----------DVMIAGKTVVVC 260 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH------HHHHhc-----------CCCcCCCEEEEE
Confidence 355655432 11222357999999999999999999999999883 334443 357999999999
Q ss_pred ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (342)
Q Consensus 172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~ 251 (342)
|+|.||+.+|+++ ++|||+|+++++.+....+.... ++ ...++++++++||+|++|+ .|+
T Consensus 261 G~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~~~--------------G~-~~~~leell~~ADIVI~at----Gt~ 320 (476)
T PTZ00075 261 GYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAAME--------------GY-QVVTLEDVVETADIFVTAT----GNK 320 (476)
T ss_pred CCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHhc--------------Cc-eeccHHHHHhcCCEEEECC----Ccc
Confidence 9999999999996 89999999998776543222111 11 2357999999999999985 478
Q ss_pred cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
++|+++.|++||+|++|||+||+ |++.++++|+++. ++||++.||
T Consensus 321 ~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep 365 (476)
T PTZ00075 321 DIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKP 365 (476)
T ss_pred cccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccC
Confidence 99999999999999999999999 7888899998754 789999999
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.84 E-value=8e-20 Score=171.88 Aligned_cols=198 Identities=19% Similarity=0.210 Sum_probs=145.3
Q ss_pred HHHHHhCCCeEEEecCCCC-----CCCHHHHHHH-hCCCceEEEecCC----------------CCccHHHHHHhhccCC
Q 019387 30 INLLIEQDCRVEICTQKKT-----ILSVEDIIAL-IGDKCDGVIGQLT----------------EDWGETLFAALSRAGG 87 (342)
Q Consensus 30 ~~~l~~~~~~v~~~~~~~~-----~~~~~e~~~~-~~~~~d~vi~~~~----------------~~~~~e~l~~l~~l~~ 87 (342)
.+.|.+.|+.|..+..... .....++.+. +. ++|++|.-.. .++++++++++|.
T Consensus 17 ~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~--- 92 (287)
T TIGR02853 17 IRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLT-TLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKG--- 92 (287)
T ss_pred HHHHHHCCCEEEEEeccccccccccceeecchhhhhc-cCCEEEECCccccCCceEecccccCCccccHHHHHhcCC---
Confidence 5678888999877644211 0112222222 33 4888885321 2346788888772
Q ss_pred ceEEEccccCCccChh-HHHhCCeeEe------cCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc
Q 019387 88 KAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (342)
Q Consensus 88 k~i~~~~~G~d~id~~-~~~~~gI~V~------n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~ 160 (342)
++...+|+++.|++ +|+++||+|+ |++.+|+.++||+++.+++... +
T Consensus 93 --~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~------------------------~ 146 (287)
T TIGR02853 93 --HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT------------------------D 146 (287)
T ss_pred --CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc------------------------C
Confidence 45567788888888 9999999999 9999999999999998777431 2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+++|++++|+|+|.||+.+|+.| +++|++|++++++++..... . ..+... ....+++++++++|+|
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~~~-~--------~~g~~~---~~~~~l~~~l~~aDiV 213 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLARI-T--------EMGLIP---FPLNKLEEKVAEIDIV 213 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH-H--------HCCCee---ecHHHHHHHhccCCEE
Confidence 478999999999999999999997 79999999999987542111 0 011111 1234678899999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
++|+|. ++++++.++.||+++++||++..+
T Consensus 214 int~P~-----~ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 214 INTIPA-----LVLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred EECCCh-----HHhCHHHHhcCCCCeEEEEeCcCC
Confidence 999996 378899999999999999998643
No 27
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.70 E-value=1.7e-16 Score=132.58 Aligned_cols=101 Identities=32% Similarity=0.457 Sum_probs=87.2
Q ss_pred EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccccC
Q 019387 18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (342)
Q Consensus 18 vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~ 97 (342)
||++++++++. ++.|++ ++++++.. ..+.+++.+.+.+ +|+++++..+++++++++.+|++ |+|++.|+|+
T Consensus 1 ili~~~~~~~~-~~~l~~-~~~v~~~~----~~~~~~~~~~l~~-~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~ 71 (133)
T PF00389_consen 1 ILITDPLPDEE-IERLEE-GFEVEFCD----SPSEEELAERLKD-ADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV 71 (133)
T ss_dssp EEESSS-SHHH-HHHHHH-TSEEEEES----SSSHHHHHHHHTT-ESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred eEEeccCCHHH-HHHHHC-CceEEEeC----CCCHHHHHHHhCC-CeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence 68889887754 788888 66888765 3578999999986 99999998777999999999987 9999999999
Q ss_pred CccChhHHHhCCeeEecCCCCCchhHHHHH
Q 019387 98 NNVDVNAANKYGIAVGNTPGVLTETTAELA 127 (342)
Q Consensus 98 d~id~~~~~~~gI~V~n~~~~~~~~vAE~~ 127 (342)
|+||+++|+++||.|+|+||+++.+||||+
T Consensus 72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999999999
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.69 E-value=9.5e-16 Score=145.00 Aligned_cols=198 Identities=18% Similarity=0.140 Sum_probs=142.1
Q ss_pred HHHHHHhCCCeEEEecCCCCCCC-----H-HHHHHHhCCCceEEEecCC----------------CCccHHHHHHhhccC
Q 019387 29 WINLLIEQDCRVEICTQKKTILS-----V-EDIIALIGDKCDGVIGQLT----------------EDWGETLFAALSRAG 86 (342)
Q Consensus 29 ~~~~l~~~~~~v~~~~~~~~~~~-----~-~e~~~~~~~~~d~vi~~~~----------------~~~~~e~l~~l~~l~ 86 (342)
..+.|.+.|++|.+...++.... . +...+.+. ++|+++.-.+ ..+++++++.+|+.
T Consensus 17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~- 94 (296)
T PRK08306 17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEH- 94 (296)
T ss_pred HHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCC-
Confidence 35778889999987655433220 0 01122233 4898885311 12357889999975
Q ss_pred CceEEEccccCCccChhHHHhCCeeEecCCCC------CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc
Q 019387 87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (342)
Q Consensus 87 ~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~------~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~ 160 (342)
.. ...|.+.++++ +.+.++||.+++.... |+.++||.++...+... +
T Consensus 95 -~~-v~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~------------------------~ 147 (296)
T PRK08306 95 -CT-IFSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT------------------------P 147 (296)
T ss_pred -CE-EEEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC------------------------C
Confidence 43 34688899988 8899999999987764 88999999777544211 2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+++|++++|+|+|.+|+.+++.| +++|++|.++|+++...... .. .+.. .....++.+.++++|+|
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~~~--~~-------~G~~---~~~~~~l~~~l~~aDiV 214 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHLARI--TE-------MGLS---PFHLSELAEEVGKIDII 214 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHH--HH-------cCCe---eecHHHHHHHhCCCCEE
Confidence 457899999999999999999997 79999999999987542111 11 1111 11234678889999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
+.++|. .+++++.++.|++|+++||++-
T Consensus 215 I~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 215 FNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred EECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 999883 5788999999999999999873
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.69 E-value=7.4e-17 Score=158.82 Aligned_cols=122 Identities=19% Similarity=0.320 Sum_probs=103.0
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..+.||+++|+|+|.||+.+|+++ ++||++|+++++.+....+..... + ...+++++++.+|+|
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~G--------------~-~vv~leEal~~ADVV 313 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALMEG--------------Y-QVLTLEDVVSEADIF 313 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhcC--------------C-eeccHHHHHhhCCEE
Confidence 458999999999999999999996 899999999998875433322111 1 124789999999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCceEEEEecCCCCC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR-G~~vd~~aL~~a--L~~g~i~~aaLDV~~~EP 303 (342)
+.+ ..|+++|+.+.|+.||+|++|+|+|| +..||+++|.++ ++.+.++ +.+|+|+.|-
T Consensus 314 I~t----TGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 314 VTT----TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred EEC----CCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 973 46789999999999999999999999 679999999998 9999888 9999999874
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.65 E-value=3.7e-15 Score=145.64 Aligned_cols=123 Identities=26% Similarity=0.316 Sum_probs=102.3
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..+.|++|+|+|+|.||+.+|+++ +++|++|+++|..+....+.... ++ ...+++++++++|+|
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~~~--------------G~-~v~~leeal~~aDVV 254 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAAMD--------------GF-RVMTMEEAAKIGDIF 254 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHHhc--------------CC-EeCCHHHHHhcCCEE
Confidence 358899999999999999999996 89999999998877543222111 11 224678899999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
+.+. .+.++|+.+.|..||+|++++|+||+++ ||.++|.+++.+.+..+..+|+|.-..
T Consensus 255 ItaT----G~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~ 314 (406)
T TIGR00936 255 ITAT----GNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKD 314 (406)
T ss_pred EECC----CCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCC
Confidence 8765 3688999999999999999999999998 999999999988888889999988643
No 31
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.53 E-value=4.7e-13 Score=131.63 Aligned_cols=155 Identities=22% Similarity=0.271 Sum_probs=111.8
Q ss_pred ccccCCccC-hhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEE
Q 019387 93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171 (342)
Q Consensus 93 ~~~G~d~id-~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIv 171 (342)
.++|+..+. .....+.+++|.|++..+..+..|...+.-.+....+. +. .+..+.|++|+|+
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~------ra-----------t~~~l~Gk~VlVi 218 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK------RA-----------TNVLIAGKVVVVA 218 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH------Hh-----------ccCCCCCCEEEEE
Confidence 456665542 22223567999999999888866644443333322111 11 1235789999999
Q ss_pred ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (342)
Q Consensus 172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~ 251 (342)
|+|.||+.+|+++ +++|++|+++|+.+....+.... ++ ...+++++++.+|+|+.+. .+.
T Consensus 219 G~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~~~--------------G~-~v~~l~eal~~aDVVI~aT----G~~ 278 (425)
T PRK05476 219 GYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAAMD--------------GF-RVMTMEEAAELGDIFVTAT----GNK 278 (425)
T ss_pred CCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHHhc--------------CC-EecCHHHHHhCCCEEEECC----CCH
Confidence 9999999999996 89999999999887543322111 11 1246889999999999875 457
Q ss_pred cccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 019387 252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (342)
Q Consensus 252 ~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~ 284 (342)
++|+.+.|..||+|++++|+|+.+. +|.++|.+
T Consensus 279 ~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 279 DVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 7999999999999999999999887 78887754
No 32
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.50 E-value=4.9e-14 Score=132.80 Aligned_cols=93 Identities=25% Similarity=0.300 Sum_probs=75.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..|.||||||||+|+||+++|++| ++||++|++|++..... +.. ... ++ ...++++++++||+|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~-~~A--------~~~-----G~-~v~sl~Eaak~ADVV 75 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSF-EVA--------KAD-----GF-EVMSVSEAVRTAQVV 75 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhh-HHH--------HHc-----CC-EECCHHHHHhcCCEE
Confidence 579999999999999999999997 79999999997653221 110 001 12 124899999999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEE
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVN 270 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lIN 270 (342)
++|+|+ ++++++++++.+..||+|++|+-
T Consensus 76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f 104 (335)
T PRK13403 76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF 104 (335)
T ss_pred EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE
Confidence 999997 77899999999999999997764
No 33
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.43 E-value=1.1e-12 Score=112.33 Aligned_cols=104 Identities=29% Similarity=0.426 Sum_probs=78.0
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..+.||++.|+|||.+|+.+|+.| +++|++|.+++..|-..+++..+.| ...+++++++++|++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~ 82 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF 82 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence 568999999999999999999997 8999999999999987777766554 235899999999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~ 284 (342)
+.+.. ++++|..+.|.+||+|+++.|++.-+. +|-+.|.+
T Consensus 83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 88764 478999999999999999999997655 56665544
No 34
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.28 E-value=9.4e-12 Score=107.64 Aligned_cols=112 Identities=24% Similarity=0.259 Sum_probs=84.3
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
++|||||+|+||..+|++| ..-|.+|++||++++.. +++.+ .+....+++.|++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~-------------~g~~~~~s~~e~~~~~dvvi~~v~ 66 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKA-EALAE-------------AGAEVADSPAEAAEQADVVILCVP 66 (163)
T ss_dssp BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHH-HHHHH-------------TTEEEESSHHHHHHHBSEEEE-SS
T ss_pred CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhh-hhhHH-------------hhhhhhhhhhhHhhcccceEeecc
Confidence 5899999999999999998 47799999999987543 22221 123456899999999999999999
Q ss_pred CCcccccccCH-HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 246 LDKTTYHLINK-ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 246 l~~~t~~li~~-~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
..++.+.++.. ..+..+++|.++||++....-+...+.+.+++..+.
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR 114 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE
T ss_pred cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce
Confidence 87887776632 367889999999999999999999999999865543
No 35
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.27 E-value=1.4e-10 Score=113.85 Aligned_cols=104 Identities=25% Similarity=0.386 Sum_probs=83.3
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..+.|++|+|+|+|.||+.+|+.+ +++|++|+++|+.+........ .+ + ...++++.+..+|+|
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A~~---------~G-----~-~~~~~~e~v~~aDVV 261 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQAAM---------EG-----Y-EVMTMEEAVKEGDIF 261 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHHHh---------cC-----C-EEccHHHHHcCCCEE
Confidence 468999999999999999999996 8999999999988754322211 11 1 123567888999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~ 284 (342)
+.|.. +.+.++...|..||+|++++|+|++++ +|..+|..
T Consensus 262 I~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 262 VTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred EECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 98753 467899999999999999999999987 88888765
No 36
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.24 E-value=3.6e-11 Score=112.31 Aligned_cols=124 Identities=20% Similarity=0.124 Sum_probs=100.6
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
.+||+||+|.||+++|++| ..-|.+|.+||+.+++..+.. ... +.....+..|+.+++|+|++|+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~~--------~~~-----Ga~~a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAELL--------AAA-----GATVAASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHHH--------HHc-----CCcccCCHHHHHHhCCEEEEecC
Confidence 4799999999999999998 577999999999987632221 111 22345678899999999999999
Q ss_pred CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
..++.+.++. ...++.+|+|+++||++.-+......+.+++++..+...--=|.-..+
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~ 126 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP 126 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence 9999988885 578999999999999999999999999999998877644433555544
No 37
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.22 E-value=4.9e-11 Score=112.50 Aligned_cols=111 Identities=19% Similarity=0.185 Sum_probs=88.1
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl 246 (342)
+|||||+|.||+.+|+.| ...|.+|.+||++++.. +.+.. .+ .....+.++++++||+|++|+|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~~~--------~g-----~~~~~~~~~~~~~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DELLA--------AG-----AVTAETARQVTEQADVIFTMVPD 65 (291)
T ss_pred CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH--------CC-----CcccCCHHHHHhcCCEEEEecCC
Confidence 489999999999999998 57899999999987542 22111 11 12245788999999999999998
Q ss_pred Cccccccc-C-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 247 ~~~t~~li-~-~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
+++++.++ + ...+..+++|+++||+++....+.+++.+.+++..+.
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 87777665 3 3467789999999999999998888999999876544
No 38
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.20 E-value=6.4e-11 Score=111.89 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=94.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
++|||||+|.||+.+|+.| ...|.+|.+||++++.. +.+. ..+ .....++++++.+||+|++|+|
T Consensus 3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~-~~~~--------~~g-----~~~~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAV-AEVI--------AAG-----AETASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HCC-----CeecCCHHHHHhcCCEEEEeCC
Confidence 4799999999999999998 57899999999987542 2111 111 1234678899999999999999
Q ss_pred CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
.+.+++.++. ...+..+++|.++||+++......+++.+.+++..+...---|+-.+|
T Consensus 68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 8888777764 346788999999999999998888899999887655443334555544
No 39
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.14 E-value=2.2e-10 Score=108.48 Aligned_cols=112 Identities=14% Similarity=0.209 Sum_probs=89.8
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
++|||||+|.||..+|+.|+ ..|.+|++||++++.. +.+.+ .+ .....+..+++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~-~~G~~V~v~d~~~~~~-~~~~~--------~g-----~~~~~s~~~~~~~aDvVi~~vp 66 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLL-KQGHQLQVFDVNPQAV-DALVD--------KG-----ATPAASPAQAAAGAEFVITMLP 66 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHH-HCCCeEEEEcCCHHHH-HHHHH--------cC-----CcccCCHHHHHhcCCEEEEecC
Confidence 37999999999999999984 6789999999987543 22111 11 2234688899999999999999
Q ss_pred CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
.....+.++. ...+..+++|.++||++++.....+.+.+.+.+..+.
T Consensus 67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 8776776664 3467789999999999999999999999999887665
No 40
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.13 E-value=3.4e-10 Score=107.31 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=90.0
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEEEc
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~l~ 243 (342)
+|||||+|+||+.+|+.| ...|.+|++||++++.. +.+. ..+ .....+.++++++ +|+|++|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~~--------~~g-----~~~~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAV-DVAG--------KLG-----ITARHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHH--------HCC-----CeecCCHHHHHHhCCCCCEEEEE
Confidence 699999999999999998 47799999999987542 2211 111 2234688888876 6999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLD 297 (342)
+|..+.++.+++ ..+..+++|.++||+++....+..++.+.+++..+. .+|
T Consensus 67 vp~~~~~~~v~~-~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 67 VPAGEVTESVIK-DLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred ecCchHHHHHHH-HHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 998778888874 567789999999999999999999999999876654 356
No 41
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.06 E-value=3.7e-10 Score=107.84 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=74.6
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..|.|++|||||+|+||+++|+.| +.+|++|+++++......+... .. ++. ..+.++++++||+|
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~A~--------~~-----G~~-~~s~~eaa~~ADVV 77 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKKAE--------AD-----GFE-VLTVAEAAKWADVI 77 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHHHH--------HC-----CCe-eCCHHHHHhcCCEE
Confidence 568999999999999999999998 7999999988766433211110 01 121 24889999999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
++++|.+.. ..+++++.+..|++|+++ -++.|
T Consensus 78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCC
Confidence 999997655 777778888899999988 55555
No 42
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.02 E-value=1.9e-09 Score=102.39 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=88.4
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEEEc
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~l~ 243 (342)
+|||||+|.||+.+|+.| ...|.+|.+||++++.. +.+. ..+ .....+.+++++. +|+|++|
T Consensus 2 ~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~~--------~~g-----~~~~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAV-EALA--------EEG-----ATGADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHH--------HCC-----CeecCCHHHHHhhcCCCCEEEEE
Confidence 799999999999999998 46799999999987543 2211 111 2234678888876 6999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~ 293 (342)
+|..+.++.++ ...+..+++|.++||++++...+...+.+.+++..+..
T Consensus 67 v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~ 115 (301)
T PRK09599 67 VPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHF 115 (301)
T ss_pred ecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEE
Confidence 99876777777 45678899999999999999999999999998876653
No 43
>PLN02712 arogenate dehydrogenase
Probab=99.00 E-value=1.7e-09 Score=112.69 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=84.9
Q ss_pred cccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cC
Q 019387 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA 237 (342)
Q Consensus 159 ~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~a 237 (342)
.+..+.+++|||||+|.||+.+|+.| +.+|.+|++||+.... +.. .. .+ +....++++++. ++
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~--~~a-~~-------~G-----v~~~~~~~el~~~~a 426 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYS--DEA-QK-------LG-----VSYFSDADDLCEEHP 426 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHH--HHH-HH-------cC-----CeEeCCHHHHHhcCC
Confidence 35678899999999999999999998 6889999999987532 110 00 11 123467888776 59
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
|+|++|+|. ..+..++.+..+..||+|++++|++.+.-...+.+.+.+..
T Consensus 427 DvVILavP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 427 EVILLCTSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred CEEEECCCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 999999994 67888888766667999999999999875455555555443
No 44
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.97 E-value=2.6e-09 Score=100.96 Aligned_cols=104 Identities=30% Similarity=0.409 Sum_probs=89.5
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..+.||++.|.|||..|+.+|.++ ++.|++|++.+..|-..+++..+.| ...++++....+|++
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDif 268 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIF 268 (420)
T ss_pred eeecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEE
Confidence 458999999999999999999996 8999999999888877777766544 346899999999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~ 284 (342)
+.+.- ++++|..++|..||+|+++-|.|.-+. ||..+|.+
T Consensus 269 iT~TG----nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 269 VTATG----NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred EEccC----CcCccCHHHHHhccCCeEEecccccceeccHHHHHH
Confidence 98864 689999999999999999999997776 67776653
No 45
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.93 E-value=5.2e-09 Score=105.17 Aligned_cols=128 Identities=11% Similarity=0.125 Sum_probs=100.8
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEEEc
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~l~ 243 (342)
+|||||+|.||+.+|++|+ .-|.+|.+||++++.. +.+.+... ..+... .....+++++.+. +|+|++|
T Consensus 8 ~IG~IGLG~MG~~mA~nL~-~~G~~V~V~NRt~~k~-~~l~~~~~----~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKV-DETVERAK----KEGNLP--LYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CEEEEeeHHHHHHHHHHHH-hCCCeEEEECCCHHHH-HHHHHhhh----hcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence 6999999999999999985 6799999999987643 33222100 001111 1134688888876 9999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
+|..+.++.++ ...+..+++|.++||++....-+...+.+.+++..+.....=|.-.++
T Consensus 80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 99999888888 567888999999999999999999999999998888877777877776
No 46
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.85 E-value=1.1e-08 Score=102.42 Aligned_cols=128 Identities=16% Similarity=0.242 Sum_probs=98.9
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh---cCCEEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL 242 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~---~aDiV~l 242 (342)
.+|||||+|.||..+|+.| ..-|.+|.+||++++.. +.+.+. ....+ .......++++++. ++|+|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~-~~l~~~----~~~~g---~~i~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKT-EEFVKK----AKEGN---TRVKGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHh----hhhcC---CcceecCCHHHHHhcCCCCCEEEE
Confidence 4799999999999999998 46789999999987653 222110 00001 11223568899886 4899999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
++|..+.++.++ ++.+..+++|.++||++.+.--|...+.+.+++..+.....=|.-.++
T Consensus 73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 999888888888 456778999999999999999999999999998888766666666655
No 47
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.84 E-value=1.4e-08 Score=96.01 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=86.5
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl 246 (342)
+|||||+|+||+.+|+.| ...|.+|.+||+.+.. +.+. ..+ .....+..+++++||+|++|+|.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~~--------~~g-----~~~~~s~~~~~~~advVi~~v~~ 65 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DELL--------SLG-----AVSVETARQVTEASDIIFIMVPD 65 (292)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHHH--------HcC-----CeecCCHHHHHhcCCEEEEeCCC
Confidence 699999999999999998 4678999999987531 2211 111 22346788899999999999998
Q ss_pred CcccccccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 019387 247 DKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (342)
Q Consensus 247 ~~~t~~li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLD 297 (342)
.++.+.++.. ..+..+++|.++|+++....-+...+.+.+++..+. .+|
T Consensus 66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd 116 (292)
T PRK15059 66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD 116 (292)
T ss_pred hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence 7777766632 357778999999999998888888888888775443 445
No 48
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.84 E-value=2.1e-07 Score=87.08 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=109.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+. ++.|+++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--K-------DVDGl~~ 124 (285)
T PRK14189 55 KACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--K-------DVDGFHV 124 (285)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--c-------CcccCCh
Confidence 44566788887766543 357788876653 24688998864 344443 33333221 1 2222210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHH-HHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~I-G~~vA 181 (342)
. ..|-...+.++ ....++.-++.++ ++ .+.++.||++.|||.|.+ |+.+|
T Consensus 125 ~---n~g~l~~~~~~-~~PcTp~aii~lL----~~---------------------~~i~l~Gk~vvViGrs~iVGkPla 175 (285)
T PRK14189 125 A---NAGALMTGQPL-FRPCTPYGVMKML----ES---------------------IGIPLRGAHAVVIGRSNIVGKPMA 175 (285)
T ss_pred h---hhhHhhCCCCC-CcCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence 0 11111112222 3444555444332 11 135789999999999999 99999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ...|++|+.+..+ ..++.+.+++||+|+.++| +.++|+. ++
T Consensus 176 ~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~avG----~~~~i~~---~~ 219 (285)
T PRK14189 176 MLL-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAVG----KRNVLTA---DM 219 (285)
T ss_pred HHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcCC----CcCccCH---HH
Confidence 998 6889999986432 1478899999999999998 4578888 56
Q ss_pred CCCCcEEEEcCCCcc
Q 019387 262 MKKEAILVNCSRGPV 276 (342)
Q Consensus 262 mk~ga~lINvaRG~~ 276 (342)
+|+|+++||+|--.+
T Consensus 220 ik~gavVIDVGin~~ 234 (285)
T PRK14189 220 VKPGATVIDVGMNRD 234 (285)
T ss_pred cCCCCEEEEcccccc
Confidence 889999999996543
No 49
>PLN02256 arogenate dehydrogenase
Probab=98.83 E-value=1.2e-08 Score=97.07 Aligned_cols=107 Identities=15% Similarity=0.213 Sum_probs=78.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISL 242 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l 242 (342)
++++|||||+|.||+.+|+.| +..|.+|++||++...... .. .+ +....++++++ .++|+|++
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~~a---~~-------~g-----v~~~~~~~e~~~~~aDvVil 98 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSDIA---AE-------LG-----VSFFRDPDDFCEEHPDVVLL 98 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHHHH---HH-------cC-----CeeeCCHHHHhhCCCCEEEE
Confidence 467999999999999999997 6789999999988532111 01 11 12245778876 46999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
|+|. ..+..++.+-....+++++++++++.+.-+..+++.+.+.
T Consensus 99 avp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~ 142 (304)
T PLN02256 99 CTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP 142 (304)
T ss_pred ecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCC
Confidence 9995 4667777554356789999999999976555556666554
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=98.80 E-value=2e-08 Score=111.96 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=91.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
.++||+||+|.||..+|++|+ .-|.+|.+||++++.. +.+.+ . +....++..++.++||+|++|+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~-~~G~~v~v~dr~~~~~-~~l~~--------~-----Ga~~~~s~~e~a~~advVi~~l 68 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLL-RSGFKVQAFEISTPLM-EKFCE--------L-----GGHRCDSPAEAAKDAAALVVVL 68 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHH-HCCCeEEEEcCCHHHH-HHHHH--------c-----CCeecCCHHHHHhcCCEEEEEc
Confidence 568999999999999999984 6799999999987543 22211 1 2234579999999999999999
Q ss_pred CCCccccccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387 245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 245 pl~~~t~~li--~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~ 290 (342)
|..+..+.++ ....+..+++|.++||++.-..-....+.+.+++..
T Consensus 69 ~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 69 SHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence 9988888887 356788899999999999999888899999987755
No 51
>PLN02858 fructose-bisphosphate aldolase
Probab=98.80 E-value=1.8e-08 Score=112.30 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=88.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
.++|||||+|+||..+|++| ...|.+|.+||++++.. +.+.. .+ .....+..+++++||+|++|+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~~--------~G-----a~~~~s~~e~~~~aDvVi~~V 388 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTL-VRFEN--------AG-----GLAGNSPAEVAKDVDVLVIMV 388 (1378)
T ss_pred CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHH--------cC-----CeecCCHHHHHhcCCEEEEec
Confidence 47899999999999999998 57899999999987542 22111 11 112468899999999999999
Q ss_pred CCCccccccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 245 pl~~~t~~li--~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
|..++++.++ +...+..+++|.++||++....-....+.+.+++
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 9888888887 3567888999999999999988888889888877
No 52
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.80 E-value=4e-08 Score=93.16 Aligned_cols=109 Identities=18% Similarity=0.270 Sum_probs=83.3
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH---hhcCCEEEEc
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISLH 243 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---l~~aDiV~l~ 243 (342)
+|||||+|+||..+|+.| ...|.+|.+||++++.. +.+.+ .+.. ...+++++ +.++|+|++|
T Consensus 2 ~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~-~~l~~--------~g~~-----~~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAV-KAMKE--------DRTT-----GVANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHH--------cCCc-----ccCCHHHHHhhcCCCCEEEEE
Confidence 799999999999999998 46799999999987643 22111 1111 12345544 4568999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
+|.. .++.++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus 67 vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 67 VPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred cCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 9976 777777 4566788999999999999888999999988876654
No 53
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.77 E-value=2.8e-08 Score=94.81 Aligned_cols=98 Identities=26% Similarity=0.284 Sum_probs=69.3
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
|.||+|||||+|+||+++|+.| +.+|++|+++++......+... ..+ +. ..+.++++++||+|++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a~--------~~G-----v~-~~s~~ea~~~ADiVvL 65 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKAT--------EDG-----FK-VGTVEEAIPQADLIMN 65 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHHH--------HCC-----CE-ECCHHHHHhcCCEEEE
Confidence 5789999999999999999997 6889998876554332222211 111 11 2468888999999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v 277 (342)
++|... ....+.++....+++|. +|.++-|=-+
T Consensus 66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccH
Confidence 999432 34445566667788885 8888888544
No 54
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.75 E-value=1.2e-06 Score=88.29 Aligned_cols=231 Identities=19% Similarity=0.177 Sum_probs=126.6
Q ss_pred CCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHH--------hCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387 24 MPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIAL--------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (342)
Q Consensus 24 ~~~~~~~~~l~~~~~~v~~~~~~~--~~~~~~e~~~~--------~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~ 93 (342)
+.|+. .+.|.+.|++|.+..... ...+.++..+. .-+++|+|+.- ..+ +.+.++.+.. |--+++..
T Consensus 17 ltP~~-v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV-~~P-~~~e~~~l~~-g~tli~~l 92 (511)
T TIGR00561 17 ATPKT-VQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKV-NAP-SDAEIAELPA-GKALVSFI 92 (511)
T ss_pred cCHHH-HHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEe-CCC-CHHHHHhcCC-CCEEEEEc
Confidence 33433 678888999998765422 23455554431 01246777632 222 3455677665 32344444
Q ss_pred cccCCccChhHHHhCCeeEecCCCCC--c--------hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccccc
Q 019387 94 AVGYNNVDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL 163 (342)
Q Consensus 94 ~~G~d~id~~~~~~~gI~V~n~~~~~--~--------~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L 163 (342)
.-..|.=-++.+.++||.+..-.... + .++++.+= +|-...+.+.+..- +.+. ....| .+
T Consensus 93 ~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG------y~Avi~Aa~~lgr~-~~g~--~taag-~v 162 (511)
T TIGR00561 93 WPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG------YRAIIEAAHEFGRF-FTGQ--ITAAG-KV 162 (511)
T ss_pred CccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH------HHHHHHHHHHhhhh-cCCc--eecCC-CC
Confidence 33334334677889999887633111 1 22233222 12221111111110 0000 00011 35
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhh-----hccCCCCccccccCC---------
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASS--------- 229 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--------- 229 (342)
.+.++.|+|.|.+|...++.+ +++|++|.++|.++... +.. +.++... .++++...++....+
T Consensus 163 p~akVlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rl-e~a-~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-EQV-QSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH-HHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 578999999999999999985 89999999999987642 221 1121110 001111111111111
Q ss_pred -HHHHhhcCCEEEEcC--CCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 230 -MDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 230 -l~~ll~~aDiV~l~~--pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
+.+.++++|+|+.++ |. .....++.++.++.||+|+++||++
T Consensus 240 ~~~e~~~~~DIVI~TalipG-~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPG-KPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHhCCCCEEEECcccCC-CCCCeeehHHHHhhCCCCCEEEEee
Confidence 456678899998876 32 2234789999999999999999986
No 55
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.74 E-value=4.4e-08 Score=95.66 Aligned_cols=109 Identities=19% Similarity=0.394 Sum_probs=78.4
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
.+.+++|.|+|.|.+|+.+++.+ +++|++|.++|+++.. .+.....++... .........+.+.++++|+|+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~-~~~l~~~~g~~v------~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDR-LRQLDAEFGGRI------HTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHH-HHHHHHhcCcee------EeccCCHHHHHHHHccCCEEE
Confidence 36788999999999999999996 7999999999998653 222211111000 001111245778889999999
Q ss_pred EcCCCC-cccccccCHHHHhcCCCCcEEEEcC--CCcccC
Q 019387 242 LHPVLD-KTTYHLINKERLATMKKEAILVNCS--RGPVID 278 (342)
Q Consensus 242 l~~pl~-~~t~~li~~~~l~~mk~ga~lINva--RG~~vd 278 (342)
.+++.+ ..+..+|+++.++.||+|+++||++ .|+.+.
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~~e 275 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGCVE 275 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCCcc
Confidence 998652 3456789999999999999999986 555543
No 56
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.74 E-value=3.3e-08 Score=93.21 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=83.0
Q ss_pred EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcc
Q 019387 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (342)
Q Consensus 170 IvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~ 249 (342)
|||+|.||..+|+.| ...|.+|.+||++++.. +.+. ..+ .....+..+++++||+|++|+|..++
T Consensus 1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~--------~~g-----~~~~~s~~~~~~~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAV-EEAV--------AAG-----AQAAASPAEAAEGADRVITMLPAGQH 65 (288)
T ss_pred CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHH--------HcC-----CeecCCHHHHHhcCCEEEEeCCChHH
Confidence 689999999999998 46789999999987542 2211 111 22346889999999999999998777
Q ss_pred cccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 019387 250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (342)
Q Consensus 250 t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLD 297 (342)
.+.++. ...+..+++|.++||++.-..-....+.+.+++..+. .+|
T Consensus 66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 777763 4566788999999999976666667777777765444 355
No 57
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.73 E-value=4.9e-08 Score=97.92 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=93.6
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---hcCCEEEEc
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLH 243 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---~~aDiV~l~ 243 (342)
.|||||+|.||+.+|+.|+ .-|.+|.+||++++.. +.+.+.+ ..........+++++. +++|+|++|
T Consensus 1 ~IG~IGLG~MG~~mA~nL~-~~G~~V~v~drt~~~~-~~l~~~~--------~~g~~~~~~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMA-DHGFTVSVYNRTPEKT-DEFLAEH--------AKGKKIVGAYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHH-hcCCeEEEEeCCHHHH-HHHHhhc--------cCCCCceecCCHHHHHhhcCCCCEEEEE
Confidence 3899999999999999984 6799999999987643 2222110 0000112235667766 468999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
+|..+.+..++ ...+..+++|.++||++....-+...+.+.+++..+....-=|.-.++
T Consensus 71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 99877888887 456678899999999999988898889999988777655555666655
No 58
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.72 E-value=4.1e-08 Score=91.06 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=91.5
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
....++||+||+|+||..++..|. .-|.+|++||++.+... .+.+ .+.....+..|+.+.||+|+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLi-k~G~kVtV~dr~~~k~~-~f~~-------------~Ga~v~~sPaeVae~sDvvi 96 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLI-KAGYKVTVYDRTKDKCK-EFQE-------------AGARVANSPAEVAEDSDVVI 96 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHH-HcCCEEEEEeCcHHHHH-HHHH-------------hchhhhCCHHHHHhhcCEEE
Confidence 345789999999999999999874 67999999999886531 2111 12234578999999999999
Q ss_pred EcCCCCcccccccC--HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCce
Q 019387 242 LHPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 242 l~~pl~~~t~~li~--~~~l~~mk~ga~l-INvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
.++|...+.+.++. ...|+..++|... |+.+.-+.--...|.++++....+
T Consensus 97 tmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~ 150 (327)
T KOG0409|consen 97 TMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR 150 (327)
T ss_pred EEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe
Confidence 99999888888774 3578888888777 899988877788888988876443
No 59
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.71 E-value=1.6e-08 Score=99.17 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=67.6
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC------chhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL 234 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 234 (342)
..|.||+|+|||||++|+.-|..| +..|.+|.+--|. .+....+ .. .++ ...+++|++
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~kA---------~~-----dGF-~v~~~~Ea~ 95 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRKA---------TE-----NGF-KVGTYEELI 95 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHHHH---------Hh-----cCC-ccCCHHHHH
Confidence 579999999999999999666664 5666666622111 2111110 00 122 236899999
Q ss_pred hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
++||+|++++|.+ + ++.+.++.+..||+|+.|. .|.|=
T Consensus 96 ~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF 133 (487)
T PRK05225 96 PQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF 133 (487)
T ss_pred HhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence 9999999999988 3 7888899999999998775 33443
No 60
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.71 E-value=5e-08 Score=90.40 Aligned_cols=95 Identities=23% Similarity=0.438 Sum_probs=81.8
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
-+.||.+.|.|||.+|+..|+.| ++||++|++....|-..+.+..+.| ...+++|+.++.|+++
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG~---------------~V~tm~ea~~e~difV 274 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEGY---------------EVTTLEEAIREVDIFV 274 (434)
T ss_pred eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhcc---------------EeeeHHHhhhcCCEEE
Confidence 47899999999999999999997 8999999998777766666555444 3579999999999999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~ 276 (342)
.+. -.+.+|..++|.+||+++++-|++.-.+
T Consensus 275 TtT----Gc~dii~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 275 TTT----GCKDIITGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred Ecc----CCcchhhHHHHHhCcCCcEEeccccccc
Confidence 765 4689999999999999999999998665
No 61
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.71 E-value=3.6e-08 Score=93.85 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=68.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.+++|||||+|+||+.+|+.| ...|.+|.+|+++.. .+++++++++|+|+++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 357899999999999999998 578999999998642 4678889999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCccc
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v 277 (342)
+|. +..+.++..-....+++++++|++++|-..
T Consensus 55 vp~-~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 55 VSM-KGVRPVAEQVQALNLPPETIIVTATKGLDP 87 (308)
T ss_pred CCh-HHHHHHHHHHHHhcCCCCcEEEEeCCcccC
Confidence 997 567777744212247889999999885443
No 62
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.66 E-value=2.3e-07 Score=88.74 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=93.9
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh-hhhhhhhccCC----CCccccccCCHHHHhhcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGE----QPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~----~~~~~~~~~~l~~ll~~aD 238 (342)
++|||||.|.||..+|..++ ..|.+|+.||+.++.... .... ....+ ...+. .........++++.+++||
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPAL-ERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHH-HHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 68999999999999999985 679999999998754211 1111 11111 11111 1112234568999999999
Q ss_pred EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH 311 (342)
Q Consensus 239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh 311 (342)
+|+-|+|-+.+.+.-+-++.-+.++++++| ..+..+ +...++.++++. .-+.+++=-|.+-+ |-+-+.|+
T Consensus 86 lViEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~~-p~R~~g~HffnP~~~~pLVEVv~g 157 (321)
T PRK07066 86 FIQESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARATH-PERCVVGHPFNPVYLLPLVEVLGG 157 (321)
T ss_pred EEEECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcCC-cccEEEEecCCccccCceEEEeCC
Confidence 999999999998888888888999999854 444443 466778887743 34445554443322 44445554
No 63
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.65 E-value=8.5e-07 Score=83.00 Aligned_cols=170 Identities=18% Similarity=0.256 Sum_probs=107.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+.. +.|+|+++.+ ..+++. ++..++-. | -+|.+--
T Consensus 55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--K-------DVDGl~~ 124 (284)
T PRK14179 55 RSALAAGFKSEVVRLPE-TISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--K-------DVDGFHP 124 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--c-------cccccCH
Confidence 44566788887766544 3567878766532 4689999854 344443 22222211 1 2232210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEec-CHHHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~-G~IG~~vA 181 (342)
. ..|-...+.+. ....++.-++.++- . .+.++.||+++|||. |.+|+++|
T Consensus 125 ~---N~g~l~~~~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~v~vIG~S~ivG~Pla 175 (284)
T PRK14179 125 M---NTGHLWSGRPV-MIPCTPAGIMEMFR----E---------------------YNVELEGKHAVVIGRSNIVGKPMA 175 (284)
T ss_pred h---hHHHHhCCCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcCcHHHH
Confidence 0 11111122222 45566666543332 1 135789999999999 99999999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|++|.+|... ..++++..++||+|+.+++. .+++....
T Consensus 176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~----~~~v~~~~--- 219 (284)
T PRK14179 176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGR----GHFVTKEF--- 219 (284)
T ss_pred HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCc----cccCCHHH---
Confidence 998 4679999988321 13788999999999999985 34566654
Q ss_pred CCCCcEEEEcCCCc
Q 019387 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~ga~lINvaRG~ 275 (342)
+|+|+++||+|--.
T Consensus 220 ik~GavVIDvgin~ 233 (284)
T PRK14179 220 VKEGAVVIDVGMNR 233 (284)
T ss_pred ccCCcEEEEeccee
Confidence 88999999998443
No 64
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.64 E-value=1.9e-06 Score=81.34 Aligned_cols=170 Identities=17% Similarity=0.175 Sum_probs=105.7
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+.. +.|+|+++.+ ..+++. +++.++-. --+|.+--
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~---------KDVDGl~~ 124 (296)
T PRK14188 55 KQTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE---------KDVDGLHV 124 (296)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc---------cccccCCh
Confidence 44566788877665443 3577888776642 4689998854 344443 33332211 12232211
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEe-cCHHHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG-~G~IG~~vA 181 (342)
. ..|-...+.+ .....++.-++.++= . .+.++.||+|+||| .|.+|+++|
T Consensus 125 ~---n~g~l~~~~~-~~~PcTp~ai~~ll~----~---------------------~~i~~~Gk~V~viGrs~~mG~PmA 175 (296)
T PRK14188 125 V---NAGRLATGET-ALVPCTPLGCMMLLR----R---------------------VHGDLSGLNAVVIGRSNLVGKPMA 175 (296)
T ss_pred h---hHHHHhCCCC-CCcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEEcCCcchHHHHH
Confidence 0 0111111222 244555655554321 1 12468999999999 999999999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|.+|+.+. .++++++++||+|+++++..+ ++.+..
T Consensus 176 ~~L-~~~g~tVtv~~~rT----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~--- 219 (296)
T PRK14188 176 QLL-LAANATVTIAHSRT----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW--- 219 (296)
T ss_pred HHH-HhCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe---
Confidence 998 46699999995321 257888999999999998633 555543
Q ss_pred CCCCcEEEEcCCCc
Q 019387 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~ga~lINvaRG~ 275 (342)
+|+|+++||+|--.
T Consensus 220 lk~GavVIDvGin~ 233 (296)
T PRK14188 220 IKPGATVIDVGINR 233 (296)
T ss_pred ecCCCEEEEcCCcc
Confidence 89999999998544
No 65
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.64 E-value=9e-08 Score=90.52 Aligned_cols=116 Identities=24% Similarity=0.300 Sum_probs=78.0
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH--Hh-hhhhhhhccCCCC-------cc-ccccCCHHHHh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQFLKANGEQP-------VT-WKRASSMDEVL 234 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~-------~~-~~~~~~l~~ll 234 (342)
++|||||.|.||..+|+.|+ ..|.+|++||++++...... .. .+..+. ..+... .+ ....++. +.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~~~ 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA-AAGMDVWLLDSDPAALSRGLDSISSSLARLV-KKGKMSQEEADATLGRIRCTTNL-EEL 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhceEeeCCH-HHh
Confidence 68999999999999999984 67999999999875421110 00 000011 111000 00 1112344 467
Q ss_pred hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 019387 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lI-NvaRG~~vd~~aL~~aL~ 287 (342)
++||+|+.|+|.+++.+..+-++....++++++|+ |++.- ....+.+.+.
T Consensus 82 ~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~ 132 (295)
T PLN02545 82 RDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQ 132 (295)
T ss_pred CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcC
Confidence 99999999999999988888777777899999987 77664 4556666664
No 66
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.63 E-value=9.5e-07 Score=79.02 Aligned_cols=111 Identities=20% Similarity=0.313 Sum_probs=79.1
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cCC
Q 019387 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EAD 238 (342)
Q Consensus 160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~aD 238 (342)
+.+++||+++|+|+|+||+.+|+.| ..+|++|+++|++++.. +.+.+.+ + ... .+.++++. +||
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~-------g-----~~~-v~~~~l~~~~~D 87 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELF-------G-----ATV-VAPEEIYSVDAD 87 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHc-------C-----CEE-EcchhhccccCC
Confidence 3578999999999999999999998 68999999999886432 2211111 1 111 12345554 799
Q ss_pred EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
+++.|.. .++|+++.+..|+ ..+++.-+-+++-| ..-.+.|++..+.
T Consensus 88 v~vp~A~-----~~~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 88 VFAPCAL-----GGVINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred EEEeccc-----ccccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 9987765 3689999999998 45888888888766 4456666665554
No 67
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.63 E-value=1.3e-07 Score=74.09 Aligned_cols=92 Identities=26% Similarity=0.361 Sum_probs=60.8
Q ss_pred eEEEEecCHHHHHHHHHHHhcCC---cEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
+|||||+|+||+.+++.| ..-| .+|. +++++++.. ..+...+ + ... ...+..+++++||+|++
T Consensus 1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~-~~~~~~~-------~---~~~-~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKA-AELAKEY-------G---VQA-TADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHH-HHHHHHC-------T---TEE-ESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHH-HHHHHhh-------c---ccc-ccCChHHhhccCCEEEE
Confidence 699999999999999998 4778 8999 458887643 2222221 1 111 12378999999999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
|+| |+...-+-.+. ....++.++|++.=|
T Consensus 68 av~--p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVK--PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S---GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred EEC--HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 998 33332233333 556678999987643
No 68
>PLN02712 arogenate dehydrogenase
Probab=98.63 E-value=8.8e-08 Score=100.00 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISL 242 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l 242 (342)
..++|||||+|.||+.+|+.| +.+|.+|.+||++...... .. .+.....++++++ .++|+|++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~A---~~------------~Gv~~~~d~~e~~~~~aDvViL 114 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLAA---RS------------LGVSFFLDPHDLCERHPDVILL 114 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---HH------------cCCEEeCCHHHHhhcCCCEEEE
Confidence 346899999999999999998 6789999999987432111 00 1112245778865 56999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
|+|. ..+..++....+..+++|++++|++.-.
T Consensus 115 avP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK 146 (667)
T PLN02712 115 CTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK 146 (667)
T ss_pred cCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc
Confidence 9995 5677888775556799999999997544
No 69
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.61 E-value=9.3e-08 Score=81.73 Aligned_cols=91 Identities=30% Similarity=0.306 Sum_probs=60.6
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
|.||+|+|||||.-|++.|..| +.-|.+|.+-.+..+...++.. .+ ++ ...+++|+.++||+|.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~A~--------~~-----Gf-~v~~~~eAv~~aDvV~~ 66 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEKAK--------AD-----GF-EVMSVAEAVKKADVVML 66 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHHHH--------HT-----T--ECCEHHHHHHC-SEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHHHH--------HC-----CC-eeccHHHHHhhCCEEEE
Confidence 5799999999999999999998 8899999987666552222211 11 12 34689999999999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEE
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILV 269 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lI 269 (342)
.+|. +....+..++....||+|+.|+
T Consensus 67 L~PD-~~q~~vy~~~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 67 LLPD-EVQPEVYEEEIAPNLKPGATLV 92 (165)
T ss_dssp -S-H-HHHHHHHHHHHHHHS-TT-EEE
T ss_pred eCCh-HHHHHHHHHHHHhhCCCCCEEE
Confidence 9994 2234455677777999998765
No 70
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.60 E-value=1.8e-06 Score=81.00 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=107.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.++|+++.+ ..+++. +++.++-. | -+|.+--
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--K-------DVDGl~~ 124 (286)
T PRK14175 55 KAAEKIGMISEIVHLEE-TATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--K-------DVDGFHP 124 (286)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCc
Confidence 44556788887665543 3467777766531 4679998864 234443 33333221 1 1222210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++-. .+..+.||++.|||.|. +|+.+|
T Consensus 125 ~---n~g~l~~~~~~-~~PcTp~ai~~ll~~-------------------------~~i~l~Gk~vvVIGrs~~VG~pla 175 (286)
T PRK14175 125 I---NIGKLYIDEQT-FVPCTPLGIMEILKH-------------------------ADIDLEGKNAVVIGRSHIVGQPVS 175 (286)
T ss_pred c---chHhHhcCCCC-CCCCcHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCchhHHHHH
Confidence 0 01111112222 344455554433321 13478999999999999 999999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
..| ...|++|+.++++. .++.+.+++||+|+.+++. .++|..+.
T Consensus 176 ~lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~--- 219 (286)
T PRK14175 176 KLL-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV--- 219 (286)
T ss_pred HHH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---
Confidence 998 68899999886532 3678899999999999985 45788864
Q ss_pred CCCCcEEEEcCCCc
Q 019387 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~ga~lINvaRG~ 275 (342)
+|+|+++||+|--.
T Consensus 220 vk~gavVIDvGi~~ 233 (286)
T PRK14175 220 VKEGAVIIDVGNTP 233 (286)
T ss_pred cCCCcEEEEcCCCc
Confidence 68999999998543
No 71
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.58 E-value=2e-07 Score=87.78 Aligned_cols=170 Identities=19% Similarity=0.192 Sum_probs=106.7
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+. ++.|+++++.+ ..+++. +++.+.-. | -+|.+--
T Consensus 56 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 125 (301)
T PRK14194 56 LRAEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--K-------DVDGFHS 125 (301)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--h-------ccCccCh
Confidence 34456777777655543 357788877663 24689998864 344443 33332211 1 2222210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC-HHHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G-~IG~~vA 181 (342)
. ..|-...+.+ .....++.-++.++ +. .+.++.||+|+|||.| .||+++|
T Consensus 126 ~---N~g~l~~~~~-~~~PcTp~aii~lL----~~---------------------~~i~l~Gk~V~vIG~s~ivG~PmA 176 (301)
T PRK14194 126 E---NVGGLSQGRD-VLTPCTPSGCLRLL----ED---------------------TCGDLTGKHAVVIGRSNIVGKPMA 176 (301)
T ss_pred h---hhhHHhcCCC-CCCCCcHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCccHHHHH
Confidence 0 0111111112 23444555544332 11 1357999999999996 9999999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|++|.+|+++. .++.++.++||+|+++++.. +++....
T Consensus 177 ~~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~--- 220 (301)
T PRK14194 177 ALL-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW--- 220 (301)
T ss_pred HHH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---
Confidence 998 56799999997542 36888999999999999853 4666654
Q ss_pred CCCCcEEEEcCCCc
Q 019387 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~ga~lINvaRG~ 275 (342)
+|+|+++||+|--.
T Consensus 221 ik~GaiVIDvgin~ 234 (301)
T PRK14194 221 LKPGAVVIDVGINR 234 (301)
T ss_pred ccCCcEEEEecccc
Confidence 88999999998544
No 72
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=4.6e-07 Score=85.45 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=84.0
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh---ccCCCC--------ccccccCCHHHHh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~l~~ll 234 (342)
++|+|||.|.||..+|..|+ ..|.+|++||++++.. +........... ..+... .......++++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFA-VSGFQTTLVDIKQEQL-ESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHH-hCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 57999999999999999984 6699999999987642 221111000000 000000 0112346788899
Q ss_pred hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEEecC
Q 019387 235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (342)
Q Consensus 235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~l-INvaRG~~vd~~aL~~aL~~g~i~~aaLDV~ 299 (342)
++||+|+.|+|...+.+..+-.+..+.+++++++ +|++. +....+.+.++ ..-+..++..|
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt---~~~~~l~~~~~-~~~r~~g~h~~ 141 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST---MSPTEIASFTK-RPERVIAMHFF 141 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcC-CcccEEEEecC
Confidence 9999999999987666655555566778999877 78876 44456666653 33445677766
No 73
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.54 E-value=4.2e-07 Score=79.03 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=68.5
Q ss_pred cccCCCeEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~L~gktvgIvG~G~I-G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
..+.|+++.|||.|.+ |..+|+.| ...|++|++.+++. .++.+.+.++|+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi 90 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI 90 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence 3689999999999996 88899997 68899998888652 357788999999
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd 278 (342)
|+.+.+.. ++|+.+. ++++.++||++....+|
T Consensus 91 VIsat~~~----~ii~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 91 VIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred EEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence 99998742 3788875 57899999999888777
No 74
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.50 E-value=8.8e-06 Score=82.28 Aligned_cols=228 Identities=18% Similarity=0.173 Sum_probs=124.8
Q ss_pred HHHHHhCCCeEEEecCC--CCCCCHHHHHHH---h-----CCCceEEEecCCCCccHHHHHHhhccCCceEEEccccCCc
Q 019387 30 INLLIEQDCRVEICTQK--KTILSVEDIIAL---I-----GDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNN 99 (342)
Q Consensus 30 ~~~l~~~~~~v~~~~~~--~~~~~~~e~~~~---~-----~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~ 99 (342)
.+.|.+.|++|.+.... ....+.++..+. + -+++|+|+.- . +.+.+.++.++. |-.+++......|.
T Consensus 23 v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV-~-~P~~~e~~~l~~-g~~li~~l~p~~~~ 99 (509)
T PRK09424 23 VEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKV-N-APSDDEIALLRE-GATLVSFIWPAQNP 99 (509)
T ss_pred HHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEe-C-CCCHHHHHhcCC-CCEEEEEeCcccCH
Confidence 67888889999876542 223455555431 0 0247877732 1 223455677765 32444544444444
Q ss_pred cChhHHHhCCeeEecCCCCC----------chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEE
Q 019387 100 VDVNAANKYGIAVGNTPGVL----------TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169 (342)
Q Consensus 100 id~~~~~~~gI~V~n~~~~~----------~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvg 169 (342)
=-++.+.++||.+......- =.++|+.+= +|-...+.+.. +.+.. ..........|.+|.
T Consensus 100 ~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~~~--~~~~~--g~~taaG~~pg~kVl 169 (509)
T PRK09424 100 ELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAHEF--GRFFT--GQITAAGKVPPAKVL 169 (509)
T ss_pred HHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHHHh--cccCC--CceeccCCcCCCEEE
Confidence 44677889999887622211 112222221 22222221111 11100 000001135699999
Q ss_pred EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh---hhcc--CCCCcccccc--CC--------HHHHh
Q 019387 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKAN--GEQPVTWKRA--SS--------MDEVL 234 (342)
Q Consensus 170 IvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~--~~--------l~~ll 234 (342)
|+|.|.+|...++. ++.+|++|+++|.+++..... +.++.. .... +....++... .+ +.+.+
T Consensus 170 ViGaG~iGL~Ai~~-Ak~lGA~V~a~D~~~~rle~a--eslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~ 246 (509)
T PRK09424 170 VIGAGVAGLAAIGA-AGSLGAIVRAFDTRPEVAEQV--ESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA 246 (509)
T ss_pred EECCcHHHHHHHHH-HHHCCCEEEEEeCCHHHHHHH--HHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence 99999999999998 489999999999988643221 122211 0000 0000000000 01 12223
Q ss_pred hcCCEEEEcCCCCc-ccccccCHHHHhcCCCCcEEEEcCC
Q 019387 235 READVISLHPVLDK-TTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 235 ~~aDiV~l~~pl~~-~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
.++|+|+.|..... ....++.++.++.||+|..+|+++=
T Consensus 247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 57999999875422 1345778999999999999999973
No 75
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.49 E-value=3.5e-07 Score=88.99 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
.-.+|+|||+ |.||+++|+.|.+.+|.+|++||+..+ ...++++.+++||+|++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVil 57 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLIF 57 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEEE
Confidence 4569999999 999999999984346999999997421 12467888999999999
Q ss_pred cCCCCcccccccCHH--HHhcCCCCcEEEEcCCCc
Q 019387 243 HPVLDKTTYHLINKE--RLATMKKEAILVNCSRGP 275 (342)
Q Consensus 243 ~~pl~~~t~~li~~~--~l~~mk~ga~lINvaRG~ 275 (342)
|+|. ..+..++.+- ....+++|+++++++.=.
T Consensus 58 avPv-~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK 91 (370)
T PRK08818 58 SAPI-RHTAALIEEYVALAGGRAAGQLWLDVTSIK 91 (370)
T ss_pred eCCH-HHHHHHHHHHhhhhcCCCCCeEEEECCCCc
Confidence 9995 4555555432 223489999999998754
No 76
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.48 E-value=7.4e-07 Score=83.43 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=78.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~a-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
..+|||||+|+||+.+++.|.+. .++++. ++|+.++.. +.+.+.+ +. ...+.++++++.++|+|++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVVE 73 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEEE
Confidence 46899999999999999987543 588877 678876432 2221111 10 1134689999999999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
|+|.. ++.-+ ....++.|..++..+.|.+.+.++|.++.+++...
T Consensus 74 ~tp~~--~h~e~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 74 AAPAS--VLRAI---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred CCCcH--HHHHH---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 99953 22222 23445677777778899888899999998876544
No 77
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.47 E-value=1.6e-06 Score=81.94 Aligned_cols=138 Identities=20% Similarity=0.255 Sum_probs=85.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh----hhhhhhccCCCC--------ccccccCCHHHH
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQP--------VTWKRASSMDEV 233 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~l~~l 233 (342)
++|+|||.|.||..+|..|+ ..|.+|++||++++... ..... ..... ..+..+ ......+++++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLE-AGLATINGNLARQV-AKGKISEEARAAALARISTATDLED- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEeeCCHHH-
Confidence 58999999999999999985 56899999999875432 11110 00000 011100 01122356654
Q ss_pred hhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCccccc
Q 019387 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFK 310 (342)
Q Consensus 234 l~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lI-NvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tP 310 (342)
+++||+|+.|+|...+.+..+-++....++++++|+ |++.- +..++.+.+.. .-+..++-.+.+-| +.+.+.+
T Consensus 81 ~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~s~la~~~~~-~~r~~g~h~~~p~~~~~~vei~~ 156 (292)
T PRK07530 81 LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSI---SITRLASATDR-PERFIGIHFMNPVPVMKLVELIR 156 (292)
T ss_pred hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC---CHHHHHhhcCC-cccEEEeeccCCcccCceEEEeC
Confidence 789999999999876665555456677889999998 56553 33467776632 23345556555333 3344444
Q ss_pred c
Q 019387 311 H 311 (342)
Q Consensus 311 h 311 (342)
+
T Consensus 157 g 157 (292)
T PRK07530 157 G 157 (292)
T ss_pred C
Confidence 4
No 78
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.47 E-value=7.4e-07 Score=74.67 Aligned_cols=105 Identities=23% Similarity=0.294 Sum_probs=74.8
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.|+++.|+|.|.+|+.++..| ...|++ |++++|+.++ .+...+.+ +..........++.+.+.++|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~r-a~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPER-AEALAEEF-------GGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHH-HHHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHH-HHHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence 68999999999999999999998 578986 9999998753 33332222 11122233456778889999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCc-EEEEcCCCcccC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPVID 278 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga-~lINvaRG~~vd 278 (342)
+.+.|... ..+.++.++..++.. ++++.+...-|+
T Consensus 80 I~aT~~~~---~~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 80 INATPSGM---PIITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp EE-SSTTS---TSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred EEecCCCC---cccCHHHHHHHHhhhhceeccccCCCCC
Confidence 99998643 388899888877654 899997665444
No 79
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.47 E-value=1.3e-06 Score=82.06 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=73.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
+.+|||||+|+||.++|+.|. .-| .+|++++++.+.+.+.+...+ + .....+..+++.+||+|
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------g-----~~~~~~~~e~~~~aDvV 69 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY-------G-----VKGTHNKKELLTDANIL 69 (279)
T ss_pred CCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc-------C-----ceEeCCHHHHHhcCCEE
Confidence 458999999999999999875 444 678999987654444332221 1 12235778888999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
++|+|. .+....+ .+....++++.++|++.-| +..+.|.+.+.
T Consensus 70 ilav~p-~~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~ 112 (279)
T PRK07679 70 FLAMKP-KDVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ 112 (279)
T ss_pred EEEeCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 999983 4444444 3444557789999998644 46666776553
No 80
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.46 E-value=9.6e-07 Score=82.07 Aligned_cols=102 Identities=31% Similarity=0.397 Sum_probs=71.9
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCc----EEEEE-cCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+|||||+|+||.++|+.|. .-|. +|++| |++++.. +.+. ..+ .....+..+++.+||+|+
T Consensus 2 kI~~IG~G~mG~a~a~~L~-~~g~~~~~~i~v~~~r~~~~~-~~~~--------~~g-----~~~~~~~~e~~~~aDvVi 66 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLV-ASGVVPPSRISTADDSNPARR-DVFQ--------SLG-----VKTAASNTEVVKSSDVII 66 (266)
T ss_pred eEEEECCcHHHHHHHHHHH-HCCCCCcceEEEEeCCCHHHH-HHHH--------HcC-----CEEeCChHHHHhcCCEEE
Confidence 6999999999999999984 4465 88888 8776432 2211 111 223457788889999999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
+|+| .+..+.++. +....++++.++|++.-| +..+.+.+.+.
T Consensus 67 l~v~-~~~~~~vl~-~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 67 LAVK-PQVVKDVLT-ELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred EEEC-cHHHHHHHH-HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 9997 455666663 444567889999988655 46677776553
No 81
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.46 E-value=3.5e-06 Score=71.56 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=77.2
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.+++++|+|.|.||+.+++.| ...| .+|.++|++++.. +.+.+.+. .... .....+.+++++++|+|
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~-~~~~~~~~-------~~~~-~~~~~~~~~~~~~~Dvv 85 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKA-KALAERFG-------ELGI-AIAYLDLEELLAEADLI 85 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHh-------hccc-ceeecchhhccccCCEE
Confidence 35688999999999999999998 4564 7899999986543 22222111 0000 01234677778999999
Q ss_pred EEcCCCCcc-c-ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387 241 SLHPVLDKT-T-YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (342)
Q Consensus 241 ~l~~pl~~~-t-~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i 291 (342)
++|+|.... . ...+... .+++|.+++|++--+... .|.+++++..+
T Consensus 86 i~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 86 INTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALGA 133 (155)
T ss_pred EeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence 999997654 1 2233332 368999999998765443 77777776543
No 82
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.45 E-value=2.1e-06 Score=82.47 Aligned_cols=116 Identities=20% Similarity=0.215 Sum_probs=75.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCC-CCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
..+|+|||.|+||..+|..|+ ..|.+|.+|+++++.. +.....-.....-.+. .+.......+++++++.+|+|+++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~~~~~-~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAA-SKGVPVRLWARRPEFA-AALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 348999999999999999984 6689999999976532 2211100000000010 011122346888888999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ 288 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG-~~vd--~~aL~~aL~~ 288 (342)
+|.. .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 82 v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 82 VPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred CchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 9964 22 6667889999999999998 3222 4456666644
No 83
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.43 E-value=6.4e-07 Score=84.10 Aligned_cols=93 Identities=14% Similarity=0.258 Sum_probs=64.3
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl 246 (342)
+|||||+|.||+.+|+.| +..|.+|.+||++++..... . ..+... ....+. +.+++||+|++|+|.
T Consensus 2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a-~--------~~g~~~---~~~~~~-~~~~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERA-I--------ERGLVD---EASTDL-SLLKDCDLVILALPI 67 (279)
T ss_pred eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHH-H--------HCCCcc---cccCCH-hHhcCCCEEEEcCCH
Confidence 799999999999999998 56799999999986542111 1 111111 011233 467899999999995
Q ss_pred CcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 247 DKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 247 ~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
. ....++ ++....+++++++++++.-.
T Consensus 68 ~-~~~~~~-~~l~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 68 G-LLLPPS-EQLIPALPPEAIVTDVGSVK 94 (279)
T ss_pred H-HHHHHH-HHHHHhCCCCcEEEeCcchH
Confidence 3 333333 45567788999999988644
No 84
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.43 E-value=6.4e-06 Score=77.15 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=64.4
Q ss_pred cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
.++.||++.|||.|. +|+++|.+| ...|+.|+.+..+ ..++++.+++||+
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADI 205 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLEL-LLAGCTVTVCHRF----------------------------TKNLRHHVRNADL 205 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHH-HHCCCeEEEEECC----------------------------CCCHHHHHhhCCE
Confidence 578999999999999 999999998 6789999987643 1478899999999
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|+.+++. .+++.. +++|+|+++||+|-
T Consensus 206 vi~avG~----p~~v~~---~~vk~gavVIDvGi 232 (285)
T PRK10792 206 LVVAVGK----PGFIPG---EWIKPGAIVIDVGI 232 (285)
T ss_pred EEEcCCC----cccccH---HHcCCCcEEEEccc
Confidence 9999953 246776 55789999999983
No 85
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.43 E-value=1.3e-06 Score=82.47 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=93.7
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC--------ccccccCCHHHHh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~l~~ll 234 (342)
++|||||.|.||..+|..++ ..|.+|+.||+.++...... ...++.+... +... ......++++ .+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~l~~~~~~~-~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSR-GKLTERERDAALARLRFTTDLG-DF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhc-ccCChhhHHHHHhCeEeeCCHH-Hh
Confidence 48999999999999999985 56999999999987532211 1111111111 1110 0111346774 57
Q ss_pred hcCCEEEEcCCCCcccccccCHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387 235 READVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH 311 (342)
Q Consensus 235 ~~aDiV~l~~pl~~~t~~li~~~~l~~m-k~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh 311 (342)
++||+|+-|+|-+.+.+.-+-...=+.+ +++++|++.+.+- ...++..++.. .-+..++..|.+-| +.+-+.|+
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~--~~~~la~~~~~-~~r~~g~hf~~P~~~~~lvElv~~ 159 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI--PIMKLAAATKR-PGRVLGLHFFNPVPVLPLVELVPT 159 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCC-CccEEEEecCCCcccCceEEEeCC
Confidence 9999999999999888877766544545 8999999877654 44555555542 33456777777655 56666666
Q ss_pred cccc
Q 019387 312 ISTQ 315 (342)
Q Consensus 312 ia~~ 315 (342)
-.+.
T Consensus 160 ~~T~ 163 (286)
T PRK07819 160 LVTS 163 (286)
T ss_pred CCCC
Confidence 4443
No 86
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.43 E-value=8.9e-07 Score=84.24 Aligned_cols=96 Identities=23% Similarity=0.238 Sum_probs=66.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
.++|+|||+|.||..+|+.| +..| .+|++||++++.. +... ..+.. .....++++.+++||+|++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~-~~a~--------~~g~~---~~~~~~~~~~~~~aDvVii 72 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETR-ARAR--------ELGLG---DRVTTSAAEAVKGADLVIL 72 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHH-HHHH--------hCCCC---ceecCCHHHHhcCCCEEEE
Confidence 46899999999999999997 4556 4899999987542 1111 11111 1123567888899999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
|+|.. .+..++ ++....+++|.++++++...
T Consensus 73 avp~~-~~~~v~-~~l~~~l~~~~iv~dvgs~k 103 (307)
T PRK07502 73 CVPVG-ASGAVA-AEIAPHLKPGAIVTDVGSVK 103 (307)
T ss_pred CCCHH-HHHHHH-HHHHhhCCCCCEEEeCccch
Confidence 99953 233333 34556789999999997644
No 87
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.41 E-value=2.2e-05 Score=73.65 Aligned_cols=168 Identities=16% Similarity=0.218 Sum_probs=106.3
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.|+|+++.+ ..+++. +++.++-. | -+|.+--
T Consensus 61 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 130 (287)
T PRK14176 61 KACERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--K-------DADGFHP 130 (287)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------cccccCh
Confidence 44556788887766543 3567777765532 4689999864 234433 33332211 1 1222210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
...|-...+.+ .....+++-++.++= + .+.++.||++.|||.|+ +|+++|
T Consensus 131 ---~N~g~l~~g~~-~~~PcTp~av~~ll~----~---------------------~~i~l~Gk~vvViGrs~iVGkPla 181 (287)
T PRK14176 131 ---YNMGKLMIGDE-GLVPCTPHGVIRALE----E---------------------YGVDIEGKNAVIVGHSNVVGKPMA 181 (287)
T ss_pred ---hhhhhHhcCCC-CCCCCcHHHHHHHHH----H---------------------cCCCCCCCEEEEECCCcccHHHHH
Confidence 01111122222 234555655553331 1 13578999999999999 999999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
..| ...|+.|..++.+ ..++.+..++||+|+.++.- .++|..+ +
T Consensus 182 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvv~AvG~----p~~i~~~---~ 225 (287)
T PRK14176 182 AML-LNRNATVSVCHVF----------------------------TDDLKKYTLDADILVVATGV----KHLIKAD---M 225 (287)
T ss_pred HHH-HHCCCEEEEEecc----------------------------CCCHHHHHhhCCEEEEccCC----ccccCHH---H
Confidence 998 6789999987632 14788899999999998753 3577766 6
Q ss_pred CCCCcEEEEcCC
Q 019387 262 MKKEAILVNCSR 273 (342)
Q Consensus 262 mk~ga~lINvaR 273 (342)
+|+|+++||+|-
T Consensus 226 vk~gavVIDvGi 237 (287)
T PRK14176 226 VKEGAVIFDVGI 237 (287)
T ss_pred cCCCcEEEEecc
Confidence 789999999985
No 88
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.39 E-value=9.1e-07 Score=86.12 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=66.9
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
++|+|||+|.||+++|+.| +..|.+|.+|++.+....... .. ..+.. .....++++++++||+|++|+|
T Consensus 1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~--a~-----~~~~~---~~~~~~~~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLAR--AL-----GFGVI---DELAADLQRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHH--Hh-----cCCCC---cccccCHHHHhcCCCEEEEeCC
Confidence 4799999999999999998 677887777776654321110 00 00110 1123577888999999999999
Q ss_pred CCcccccccCHHHHh-cCCCCcEEEEcCCCcc
Q 019387 246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPV 276 (342)
Q Consensus 246 l~~~t~~li~~~~l~-~mk~ga~lINvaRG~~ 276 (342)
. ..+..++.+ ... .+++++++.+++.-..
T Consensus 70 ~-~~~~~vl~~-l~~~~l~~~~ivtDv~SvK~ 99 (359)
T PRK06545 70 V-DATAALLAE-LADLELKPGVIVTDVGSVKG 99 (359)
T ss_pred H-HHHHHHHHH-HhhcCCCCCcEEEeCccccH
Confidence 6 456666643 223 4789999999987653
No 89
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.38 E-value=1.3e-06 Score=87.12 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=75.1
Q ss_pred eEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
+|+|+| +|.||+.+|+.| +..|.+|.+|+++++.. ...... .+ .....+.++.+.+||+|++|+|
T Consensus 2 kI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~-~~~a~~-------~g-----v~~~~~~~e~~~~aDvVIlavp 67 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKG-KEVAKE-------LG-----VEYANDNIDAAKDADIVIISVP 67 (437)
T ss_pred EEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHH-HHHHHH-------cC-----CeeccCHHHHhccCCEEEEecC
Confidence 799997 999999999997 67899999999876432 111111 11 1223577888999999999999
Q ss_pred CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
. ..+..++ ++....+++|+++++++.......+++.+.+.
T Consensus 68 ~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~ 107 (437)
T PRK08655 68 I-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAP 107 (437)
T ss_pred H-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcC
Confidence 6 3455555 44566789999999999755444555555544
No 90
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.37 E-value=2e-06 Score=84.23 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=78.0
Q ss_pred chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~ 198 (342)
.....+..+-.++...|+.. ++..+. ......++|+||| +|.||+.+|+.| +..|.+|.+||+.
T Consensus 67 ~~~~~~~i~~~i~~~s~~~q------~~~~~~--------~~~~~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~ 131 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYSSE------NDKGFK--------TLNPDLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQD 131 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHh------HHhccc--------ccCcccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCC
Confidence 44445666777777766442 121111 1122458999999 999999999998 6778999999974
Q ss_pred chhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
.. .+.++++++||+|++|+|.. .+..++. + +..+++|+++++++.-.
T Consensus 132 ~~---------------------------~~~~~~~~~aDlVilavP~~-~~~~~~~-~-l~~l~~~~iv~Dv~SvK 178 (374)
T PRK11199 132 DW---------------------------DRAEDILADAGMVIVSVPIH-LTEEVIA-R-LPPLPEDCILVDLTSVK 178 (374)
T ss_pred cc---------------------------hhHHHHHhcCCEEEEeCcHH-HHHHHHH-H-HhCCCCCcEEEECCCcc
Confidence 21 25577889999999999965 3455553 3 44489999999997654
No 91
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.33 E-value=2.1e-06 Score=80.45 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=73.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
++|||||+|+||+++++.|. .-| .+|+++|++++. .+.+.+.+ + .....+..+++.+||+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~-~~~l~~~~-------g-----~~~~~~~~e~~~~aDiIi 68 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSN-LKNASDKY-------G-----ITITTNNNEVANSADILI 68 (272)
T ss_pred CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHH-HHHHHHhc-------C-----cEEeCCcHHHHhhCCEEE
Confidence 48999999999999999874 334 379999997654 22221111 1 122357788899999999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
+|+| ......++. +.-..++++.++|++.=| |+.+.|.+.|.
T Consensus 69 Lavk-P~~~~~vl~-~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 69 LSIK-PDLYSSVIN-QIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred EEeC-hHHHHHHHH-HHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 9999 355566553 333456788999999876 56677777664
No 92
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.33 E-value=2e-05 Score=73.81 Aligned_cols=170 Identities=18% Similarity=0.215 Sum_probs=107.9
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+.. +.|+++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~ 123 (285)
T PRK14191 54 KACERVGMDSDLHTLQE-NTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--K-------DVDGFHP 123 (285)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCh
Confidence 44556788887766544 3467777665532 4688998864 244443 23332211 1 2232211
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC-HHHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G-~IG~~vA 181 (342)
. ..|-...+.+ .....++.-++.++ ++ .+.++.||+|.|||-| .+|+++|
T Consensus 124 ~---n~g~l~~g~~-~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvVvGrs~~VG~Pla 174 (285)
T PRK14191 124 L---NIGKLCSQLD-GFVPATPMGVMRLL----KH---------------------YHIEIKGKDVVIIGASNIVGKPLA 174 (285)
T ss_pred h---hHHHHhcCCC-CCCCCcHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence 0 0111122222 24556666655433 11 1357899999999999 9999999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|..+..+. .++.+.+++||+|+.+++. .+++..+.+
T Consensus 175 ~lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG~----p~~i~~~~v-- 219 (285)
T PRK14191 175 MLM-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVGK----PDLIKASMV-- 219 (285)
T ss_pred HHH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecCC----CCcCCHHHc--
Confidence 998 57799999874321 3578889999999999963 568888765
Q ss_pred CCCCcEEEEcCCCc
Q 019387 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~ga~lINvaRG~ 275 (342)
|+|+++||+|--.
T Consensus 220 -k~GavVIDvGi~~ 232 (285)
T PRK14191 220 -KKGAVVVDIGINR 232 (285)
T ss_pred -CCCcEEEEeeccc
Confidence 8999999998644
No 93
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.32 E-value=2e-06 Score=85.45 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=75.9
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-----------cccccCCHHHHh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-----------TWKRASSMDEVL 234 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~ll 234 (342)
.+|||||+|.||..+|..|+ . |.+|++||+++.. .+.+.. +..+. +....++-.+.+
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~-ve~l~~---------G~~~~~e~~~~~l~~~g~l~~t~~~~~~ 74 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKR-ILELKN---------GVDVNLETTEEELREARYLKFTSEIEKI 74 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHH-HHHHHC---------cCCCCCCCCHHHHHhhCCeeEEeCHHHH
Confidence 58999999999999999985 3 6999999998754 333221 11100 000122333468
Q ss_pred hcCCEEEEcCCCCc------ccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387 235 READVISLHPVLDK------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (342)
Q Consensus 235 ~~aDiV~l~~pl~~------~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL 286 (342)
++||++++|+|... +...++. +...+.+++|.++|+.|.-..-..+.+++.+
T Consensus 75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~ 134 (425)
T PRK15182 75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPI 134 (425)
T ss_pred cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHH
Confidence 89999999999653 3344442 4566789999999999998888887665544
No 94
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.32 E-value=4.2e-06 Score=83.05 Aligned_cols=109 Identities=23% Similarity=0.238 Sum_probs=75.3
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH------------
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------ 233 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l------------ 233 (342)
++|+|||+|.||..+|..|+ ..|.+|++||++++.. +.+.. +..+. ....++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La-~~G~~V~~~D~~~~~v-~~l~~---------g~~~~---~e~~l~~~l~~~~~~g~l~~ 69 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFA-SRQKQVIGVDINQHAV-DTINR---------GEIHI---VEPDLDMVVKTAVEGGYLRA 69 (415)
T ss_pred cEEEEECcchhhHHHHHHHH-hCCCEEEEEeCCHHHH-HHHHC---------CCCCc---CCCCHHHHHHHHhhcCceee
Confidence 68999999999999999984 6799999999987542 22111 11111 11233333
Q ss_pred ---hhcCCEEEEcCCCCc------cccccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 234 ---LREADVISLHPVLDK------TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 234 ---l~~aDiV~l~~pl~~------~t~~li--~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
+++||+|++|+|... +...+. -......+++|+++|+.+.-..=..+.+...+.+
T Consensus 70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 237999999999641 222222 2456677899999999998887777778777765
No 95
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.31 E-value=7.8e-06 Score=77.16 Aligned_cols=131 Identities=17% Similarity=0.249 Sum_probs=82.5
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-------hhhhhhccCCCC--------ccccccCCH
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-------YGQFLKANGEQP--------VTWKRASSM 230 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~~~~~~l 230 (342)
++|+|||.|.||..+|..++ ..|.+|++||++++.. +...+. ...+. ..+... .......++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l-~~~~~~i~~~~~~l~~~~-~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVSEEIL-KNAMELIESGPYGLRNLV-EKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHH-hcCCeEEEEeCCHHHH-HHHHHHHHhhhhhHHHHH-HcCCCCHHHHHHHHhCcEeeCCH
Confidence 58999999999999999974 6799999999987542 211110 00000 011100 001122345
Q ss_pred HHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 231 ~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
+.+++||+|+.|+|...+.+.-+-++.-..++++++|++...| +....+.+.+.. .-+..++.-|.+-|
T Consensus 81 -~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P~~ 149 (291)
T PRK06035 81 -ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNPAP 149 (291)
T ss_pred -HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCCcc
Confidence 4678999999999976554444444455667899999988776 455677777743 33455666555444
No 96
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.31 E-value=5.1e-07 Score=81.50 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHH-hcCCcEEEE-EcCCch
Q 019387 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLYQA 200 (342)
Q Consensus 123 vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~-~afg~~V~~-~d~~~~ 200 (342)
.++|.+..++...|++. +|. ..++++|+|.|.+|+.+++.+. ...|+++.+ +|..+.
T Consensus 63 ~~gy~v~~l~~~~~~~l------------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~ 121 (213)
T PRK05472 63 GVGYNVEELLEFIEKIL------------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE 121 (213)
T ss_pred CCCeeHHHHHHHHHHHh------------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh
Confidence 35699999999888774 111 2458999999999999998531 357888885 677653
Q ss_pred hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEEEcCCCCcc---cccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~l~~pl~~~---t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
.. .. .+ .........++++++++ .|.+++|+|.+.. ...+.......-+....+.+|+.||.
T Consensus 122 ~~-~~-------~i-----~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~ 188 (213)
T PRK05472 122 KI-GT-------KI-----GGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDV 188 (213)
T ss_pred hc-CC-------Ee-----CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCC
Confidence 21 00 00 01112233577888865 9999999997665 22333344445566678999999999
Q ss_pred ccCHHHHHHHHHc
Q 019387 276 VIDEVALVEHLKQ 288 (342)
Q Consensus 276 ~vd~~aL~~aL~~ 288 (342)
+|+.++|..+|..
T Consensus 189 ~v~~~~l~~~l~~ 201 (213)
T PRK05472 189 IVRNVDLTVELQT 201 (213)
T ss_pred EEEEechHHHHHH
Confidence 9999999999864
No 97
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.30 E-value=7.6e-06 Score=77.13 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=87.0
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh----hhhhhhccCCC--------CccccccCCHHHH
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ--------PVTWKRASSMDEV 233 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~--------~~~~~~~~~l~~l 233 (342)
++|+|||.|.||..+|..++ .-|.+|+.||++++.. +..... ........... ........++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEAL-EKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 58999999999999999985 5689999999987532 111111 00000000000 0112234688888
Q ss_pred hhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH 311 (342)
Q Consensus 234 l~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh 311 (342)
++.||+|+.|+|...+.+.-+-++.-..++++++++..+.+ +....+.+.+.. .-+..++-.|.+-+ +.+.+.|+
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~-~~r~vg~Hf~~p~~~~~lvevv~~ 158 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGR-PEKFLALHFANEIWKNNTAEIMGH 158 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCC-cccEEEEcCCCCCCcCCeEEEeCC
Confidence 99999999999966555555545566678889988543332 355667777653 23345554333322 45566665
Q ss_pred c
Q 019387 312 I 312 (342)
Q Consensus 312 i 312 (342)
-
T Consensus 159 ~ 159 (287)
T PRK08293 159 P 159 (287)
T ss_pred C
Confidence 3
No 98
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.29 E-value=5.6e-06 Score=77.71 Aligned_cols=106 Identities=17% Similarity=0.264 Sum_probs=71.1
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
.+|+|||+|+||+.+++.|. ..| .+|.+|+++...+.+.....+ + ......+.++++.++|+|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~~-------~----~~~~~~~~~e~~~~aDvVi 69 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDKY-------P----TVELADNEAEIFTKCDHSF 69 (277)
T ss_pred CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHHc-------C----CeEEeCCHHHHHhhCCEEE
Confidence 47999999999999999874 445 689999886543322221111 0 0112357788889999999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
+|+|. .....++ .+....++++..+|.+.=| +..+.|.+.+.
T Consensus 70 lavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 70 ICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred EecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 99993 3333333 2333456778899998777 67777887663
No 99
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.28 E-value=3.8e-06 Score=72.12 Aligned_cols=105 Identities=19% Similarity=0.293 Sum_probs=64.3
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
+|+|+|-|+.|.++|..|+ .-|-+|..|.+.++. .+..... ...........+.......+++++++++|+|++++|
T Consensus 1 KI~ViGaG~~G~AlA~~la-~~g~~V~l~~~~~~~-~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLA-DNGHEVTLWGRDEEQ-IEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEESSSHHHHHHHHHHH-HCTEEEEEETSCHHH-HHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCEEEEEeccHHH-HHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence 6899999999999999984 678999999998643 2222111 000000001111223345789999999999999999
Q ss_pred CCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 246 LDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
... ..-+-+.....++++..+|++..|=
T Consensus 79 s~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 79 SQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred HHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 532 2223334445567899999998774
No 100
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.27 E-value=5.6e-06 Score=77.76 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=85.8
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC--------ccccccCCHHHHh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~l~~ll 234 (342)
++|+|||.|.||..+|..++ ..|.+|++||++++...... ...+... ...+... ......+++++ +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~-~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 80 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA-VAGYDVVMVDISDAAVDRGLATITKSLDRL-VKKGKMTEADKEAALARITGTTDLDD-L 80 (282)
T ss_pred cEEEEEccCHHHHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 57999999999999999984 66999999999876432110 0000011 1111000 01122345554 7
Q ss_pred hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH 311 (342)
Q Consensus 235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh 311 (342)
++||+|++|+|-+.+.+.-+-++.-+.++++++++...-| +....|.+.+... -+..++--+.+-| +.+.+.|+
T Consensus 81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~P~~~~~~vev~~g 156 (282)
T PRK05808 81 KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFNPVPVMKLVEIIRG 156 (282)
T ss_pred ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccCCcccCccEEEeCC
Confidence 8999999999976666655555566778999988555444 6666888887432 2344444343322 44445555
No 101
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.27 E-value=3.6e-06 Score=80.29 Aligned_cols=108 Identities=15% Similarity=0.191 Sum_probs=69.7
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh-hhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
.+|+|||.|.||..+|..|+ .-|.+|.+|++.++.. +...... ..........+.+.....+.++++++||+|++|+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 79 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLA-RNGHDVTLWARDPEQA-AEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV 79 (325)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence 37999999999999999985 5689999999976432 2211100 0000000000011223457888899999999999
Q ss_pred CCCcccccccCHHHHhcCCCCcEEEEcCCCccc
Q 019387 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v 277 (342)
|. ..+..++. .....++++.++|+++.|--.
T Consensus 80 ~~-~~~~~v~~-~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 80 PS-QALREVLK-QLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred CH-HHHHHHHH-HHHhhcCCCCEEEEEeecccC
Confidence 95 45555553 445567889999999765443
No 102
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.25 E-value=2.9e-06 Score=73.69 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=70.7
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcc---CCCC----------cccccc
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN---GEQP----------VTWKRA 227 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~~ 227 (342)
..+...+|.|+|.|+.|+..++.+ +++|++|..+|.++... +.....+....... .... ......
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERL-RQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHH-HHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHH-HhhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence 456778999999999999999996 89999999999987532 22111111111110 0000 001123
Q ss_pred CCHHHHhhcCCEEEE-cCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 228 SSMDEVLREADVISL-HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 228 ~~l~~ll~~aDiV~l-~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
..|.+.++.+|+|+. ++--.+....+|.++.++.||+|+++++++
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 468889999999875 333356778999999999999999999985
No 103
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.24 E-value=7.9e-06 Score=82.92 Aligned_cols=131 Identities=18% Similarity=0.266 Sum_probs=87.9
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH---HHhhhhhhhhccCCCC--------ccccccCCHHHHh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~~ll 234 (342)
++|||||.|.||..||..++ ..|.+|++||++++..... ....+..+. .++... .......++++ +
T Consensus 6 ~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~-~~G~~~~~~~~~~~~~i~~~~~~~~-l 82 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNSLV-TKGKLTAEECERTLKRLIPVTDLHA-L 82 (503)
T ss_pred cEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence 57999999999999999985 5699999999987643211 001111111 111100 01223467766 4
Q ss_pred hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lI-NvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
++||+|+.|+|-+.+.+..+-.+.-..++++++|. |++. ++...+.+++.. ..+..++..|.+-|
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTSt---l~i~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSS---LSITAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC---CCHHHHHHhcCc-ccceEEEeccCccc
Confidence 79999999999888887776666556788888877 6765 444567777753 45677888777656
No 104
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.22 E-value=4.8e-06 Score=77.95 Aligned_cols=100 Identities=18% Similarity=0.314 Sum_probs=65.9
Q ss_pred eEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
+|||||+|.||+++|+.|+ ..| .+|++||+++...... . ..+.. ....+.+++. +||+|++|+
T Consensus 2 ~I~iIG~G~mG~sla~~l~-~~g~~~~v~~~d~~~~~~~~~-~--------~~g~~----~~~~~~~~~~-~aD~Vilav 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALK-EKGLISKVYGYDHNELHLKKA-L--------ELGLV----DEIVSFEELK-KCDVIFLAI 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHH-hcCCCCEEEEEcCCHHHHHHH-H--------HCCCC----cccCCHHHHh-cCCEEEEeC
Confidence 7999999999999999974 445 5899999987542211 1 11111 1124667765 599999999
Q ss_pred CCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
|.. ....++ .+... +++++++++++. + ...+.+++.+
T Consensus 67 p~~-~~~~~~-~~l~~-l~~~~iv~d~gs---~-k~~i~~~~~~ 103 (275)
T PRK08507 67 PVD-AIIEIL-PKLLD-IKENTTIIDLGS---T-KAKIIESVPK 103 (275)
T ss_pred cHH-HHHHHH-HHHhc-cCCCCEEEECcc---c-hHHHHHHHHH
Confidence 953 344444 34445 889999999754 2 3446666644
No 105
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.21 E-value=2.8e-06 Score=79.71 Aligned_cols=107 Identities=22% Similarity=0.245 Sum_probs=68.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEE--EEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC-HHHHhhcCCEEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS 241 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ll~~aDiV~ 241 (342)
-++|+|+|+|.||+.+|+.| +.-|..| +++|++......+. ..........+ ..+.+.+||+|+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a~------------~lgv~d~~~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAAL------------ELGVIDELTVAGLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHHh------------hcCcccccccchhhhhcccCCEEE
Confidence 46899999999999999997 6666655 56666554322221 01111111123 367778899999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL 286 (342)
+++|- ..|..++.+- ...+|+|+++.+++.=.----++..+.+
T Consensus 70 vavPi-~~~~~~l~~l-~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 70 VAVPI-EATEEVLKEL-APHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred EeccH-HHHHHHHHHh-cccCCCCCEEEecccccHHHHHHHHHhc
Confidence 99996 4555555443 3379999999999875533333333333
No 106
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.20 E-value=1.2e-05 Score=81.81 Aligned_cols=131 Identities=21% Similarity=0.303 Sum_probs=87.3
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCC-C-------ccccccCCHHHHh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQ-P-------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~-~-------~~~~~~~~l~~ll 234 (342)
++|||||.|.||..+|..++ ..|.+|++||++++...... ...++... ..+.. . .......++++ +
T Consensus 8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~-~~G~~~~~~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAKLV-EKGKLTAEQADAALARLRPVEALAD-L 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 58999999999999999985 56999999999986432210 11111111 11110 0 01223457766 5
Q ss_pred hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~l-INvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
.+||+|+.++|.+.+.+..+-.+.-..++++++| +|+|.-.+ .++.+++.. .=+..++..|.+-|
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~ 150 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP 150 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence 6999999999998888877766655567899999 59987544 467777653 23346777777555
No 107
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.18 E-value=1e-05 Score=80.11 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=74.3
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhccCCCCccccccCCHHHHhhcCC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~ll~~aD 238 (342)
+|||||+|.||..+|..|+ ..|.+|++||++++.. +.+.... ...+...-... ......++++++++||
T Consensus 2 kI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~~~~v-~~l~~g~~~~~e~~l~~~~~~~~~~g-~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLA-DLGHEVTGVDIDQEKV-DKLNKGKSPIYEPGLDELLAKALAAG-RLRATTDYEDAIRDAD 78 (411)
T ss_pred EEEEECCCchhHHHHHHHH-hcCCeEEEEECCHHHH-HHhhcCCCCCCCCCHHHHHHHhhhcC-CeEEECCHHHHHhhCC
Confidence 6999999999999999984 6789999999987542 2211100 00000000000 0223457888899999
Q ss_pred EEEEcCCCCcccc------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387 239 VISLHPVLDKTTY------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (342)
Q Consensus 239 iV~l~~pl~~~t~------~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL 286 (342)
+|++|+|...... .+.. ......+++|.++|+.+.-..=..+.+.+.+
T Consensus 79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 9999999653311 1221 3455678999999999865554556665443
No 108
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.17 E-value=7.3e-06 Score=77.46 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019387 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (342)
Q Consensus 177 G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~ 256 (342)
|+.+|++|+ .-|.+|++||++++...+...+. +... +....++..+++++||+|++|+|..++++.++ .
T Consensus 32 GspMArnLl-kAGheV~V~Drnrsa~e~e~~e~----Laea-----GA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~ 100 (341)
T TIGR01724 32 GSRMAIEFA-MAGHDVVLAEPNREFMSDDLWKK----VEDA-----GVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R 100 (341)
T ss_pred HHHHHHHHH-HCCCEEEEEeCChhhhhhhhhHH----HHHC-----CCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence 789999984 66999999998765321110000 1111 22345688999999999999999888888887 5
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 257 ~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
..+..+++|+++||++. ++.+.+++.|+.
T Consensus 101 GLaa~L~~GaIVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 101 TIIEHVPENAVICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred HHHhcCCCCCEEEECCC---CCHHHHHHHHHH
Confidence 68899999999999965 778888888876
No 109
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.17 E-value=0.00012 Score=68.69 Aligned_cols=170 Identities=16% Similarity=0.246 Sum_probs=107.4
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+.. +.|+|+++.+ ..+++. +++.++-. | -+|.+--
T Consensus 54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--K-------DVDGl~p 123 (284)
T PRK14170 54 KRTEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--K-------DVDGFHP 123 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence 44556788887766554 3467777766532 4688998854 344443 33332221 1 2222211
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-.....+ .+...++.-++.++- . .+.++.||++.|||-+. +|+++|
T Consensus 124 ~---N~g~l~~~~~-~~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvVvGrS~iVGkPla 174 (284)
T PRK14170 124 V---NVGNLFIGKD-SFVPCTPAGIIELIK----S---------------------TGTQIEGKRAVVIGRSNIVGKPVA 174 (284)
T ss_pred h---hhhHHhCCCC-CCCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 0 0111111112 245556666554441 1 24679999999999986 699999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|+.+... ..++.+..++||+|+.+++. .++|..+.
T Consensus 175 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----~~~i~~~~--- 218 (284)
T PRK14170 175 QLL-LNENATVTIAHSR----------------------------TKDLPQVAKEADILVVATGL----AKFVKKDY--- 218 (284)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHH---
Confidence 998 5678999877432 14688999999999999974 46788765
Q ss_pred CCCCcEEEEcCCCc
Q 019387 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~ga~lINvaRG~ 275 (342)
.|+|+++||+|--.
T Consensus 219 vk~GavVIDvGin~ 232 (284)
T PRK14170 219 IKPGAIVIDVGMDR 232 (284)
T ss_pred cCCCCEEEEccCcc
Confidence 56999999998554
No 110
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.16 E-value=7.5e-06 Score=83.07 Aligned_cols=129 Identities=17% Similarity=0.118 Sum_probs=80.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-------hhhhhhccCCCCc-cccccCCHHHHhhcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-------YGQFLKANGEQPV-TWKRASSMDEVLREA 237 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~l~~ll~~a 237 (342)
++|||||.|.||..+|..|+ .-|.+|++||+.++... ..... +.. +........ .....+++++++++|
T Consensus 5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~~~~g~i~~~~~~~ea~~~a 81 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAER-IIGEVLANAERAYAM-LTDAPLPPEGRLTFCASLAEAVAGA 81 (495)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHhh-hccchhhhhhceEeeCCHHHHhcCC
Confidence 48999999999999999985 56999999999876431 11110 000 000000001 123457888999999
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~ 301 (342)
|+|+.++|...+.+..+-++.-..++++++| ..+..++ +...+.+.+... ....++-+-+
T Consensus 82 D~Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~~--~r~~~~hP~n 141 (495)
T PRK07531 82 DWIQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTHP--ERLFVAHPYN 141 (495)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCCc--ceEEEEecCC
Confidence 9999999977665654444444567778755 4444443 355777766432 2344554444
No 111
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.16 E-value=1.4e-05 Score=76.04 Aligned_cols=116 Identities=15% Similarity=0.227 Sum_probs=70.9
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh----hhhhhhccCCC---CccccccCCHHHHhhcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ---PVTWKRASSMDEVLREAD 238 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~l~~ll~~aD 238 (342)
++|+|||.|.||..+|..|+ ..|.+|++||++.+.. +..... .+.. ...... ........++++++++||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~-~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~aD 81 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA-RKGLQVVLIDVMEGAL-ERARGVIERALGVY-APLGIASAGMGRIRMEAGLAAAVSGAD 81 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHH-HHHHHHHHHHHHHh-hhcccHHHHhhceEEeCCHHHHhccCC
Confidence 58999999999999999984 6789999999877542 221110 1100 000000 000122357788889999
Q ss_pred EEEEcCCCCcccc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 239 VISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 239 iV~l~~pl~~~t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
+|++|+|...+.+ .++ ++.-..++++++++...-| +....+.+.+.
T Consensus 82 lVi~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 82 LVIEAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EEEEeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 9999999654433 333 3333346777776544333 34567777764
No 112
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.13 E-value=2.1e-05 Score=71.65 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=93.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcE---EEEEcCCc----hhH--HHHHHhhhhhhhhccCCCCccccccCCHH
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN---LIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~---V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (342)
..+.++++.|+|.|.+|+.+|+.| ...|++ ++.+|++. +.. +..+...+. +...... . ..++.
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~--~~~l~ 92 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T--GGTLK 92 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c--cCCHH
Confidence 467899999999999999999997 577884 99999983 211 111111111 1111011 1 13687
Q ss_pred HHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-ceEEEEecCCCCCCCccccc
Q 019387 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEVTELGFSSFK 310 (342)
Q Consensus 232 ~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~-i~~aaLDV~~~EP~~~~~tP 310 (342)
+.+.++|+|+.+.| .++++.+.++.|+++.++...+. ...|.-+.+|.+.|. +..-+...+...=.|.++.|
T Consensus 93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga~i~a~G~~~~~~Q~nn~~~fP 165 (226)
T cd05311 93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGADIVATGRSDFPNQVNNVLGFP 165 (226)
T ss_pred HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCCcEEEeCCCCCccccceeeecc
Confidence 88899999999886 48899999999999998888883 334554555555444 45555444433337888888
Q ss_pred ccccc
Q 019387 311 HISTQ 315 (342)
Q Consensus 311 hia~~ 315 (342)
-++-.
T Consensus 166 g~~~g 170 (226)
T cd05311 166 GIFRG 170 (226)
T ss_pred hhhHH
Confidence 77543
No 113
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.13 E-value=0.00013 Score=68.40 Aligned_cols=171 Identities=16% Similarity=0.233 Sum_probs=108.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+.. +.++|+++.+ ..+++. +++.++-. | -+|.+--
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--K-------DVDGl~~ 124 (284)
T PRK14190 55 KAAEKVGIYSELYEFPA-DITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--K-------DVDGFHP 124 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCH
Confidence 44566788887766544 3567777765531 4678998754 244443 23322211 1 2233211
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
.. .|-...+.++ ....++.-++.++ ++ .+.++.||++.|||-+. +|+++|
T Consensus 125 ~n---~g~l~~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla 175 (284)
T PRK14190 125 IN---VGRMMLGQDT-FLPCTPHGILELL----KE---------------------YNIDISGKHVVVVGRSNIVGKPVG 175 (284)
T ss_pred hh---HHHHhcCCCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence 10 1111222222 4455666555333 11 13578999999999885 699999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|+.++.+ ..++++.+++||+|+.++.. .++|+.+.+
T Consensus 176 ~lL-~~~~atVt~chs~----------------------------t~~l~~~~~~ADIvI~AvG~----p~~i~~~~i-- 220 (284)
T PRK14190 176 QLL-LNENATVTYCHSK----------------------------TKNLAELTKQADILIVAVGK----PKLITADMV-- 220 (284)
T ss_pred HHH-HHCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEecCC----CCcCCHHHc--
Confidence 998 5779999887532 13788899999999999863 458998876
Q ss_pred CCCCcEEEEcCCCcc
Q 019387 262 MKKEAILVNCSRGPV 276 (342)
Q Consensus 262 mk~ga~lINvaRG~~ 276 (342)
|+|+++||+|.-.+
T Consensus 221 -k~gavVIDvGi~~~ 234 (284)
T PRK14190 221 -KEGAVVIDVGVNRL 234 (284)
T ss_pred -CCCCEEEEeecccc
Confidence 79999999986653
No 114
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=0.00011 Score=69.06 Aligned_cols=187 Identities=21% Similarity=0.213 Sum_probs=113.9
Q ss_pred ceEEEEeCCCCchH-----HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHH
Q 019387 15 KYRVVSTKPMPGTR-----WINLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAA 81 (342)
Q Consensus 15 ~~~vl~~~~~~~~~-----~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~ 81 (342)
+..++...+-+.+. -.+..++.|.+++....++ ..+++|+.+.+. ++.|+|+++.+ ..+++. +++.
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~ 109 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPE-STSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEA 109 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence 44454444444422 1344566788887766544 346777766553 14689998864 244443 2333
Q ss_pred hhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccc
Q 019387 82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN 161 (342)
Q Consensus 82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~ 161 (342)
.+-. | -+|.+--. ..|-...+.+ .....++.-++.++- + .+.
T Consensus 110 I~p~--K-------DVDGl~~~---N~g~l~~~~~-~~~PcTp~avi~lL~----~---------------------~~i 151 (287)
T PRK14173 110 IDPL--K-------DVDGFHPL---NVGRLWMGGE-ALEPCTPAGVVRLLK----H---------------------YGI 151 (287)
T ss_pred cCcc--c-------cccccChh---hhHHHhcCCC-CCCCCCHHHHHHHHH----H---------------------cCC
Confidence 2211 1 22222110 0111111122 244555655554432 1 135
Q ss_pred ccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
++.||++.|||-+. +|+++|.+| ..-|+.|+.+..+ ..++++..++||+|
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVtichs~----------------------------T~~l~~~~~~ADIv 202 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALL-LREDATVTLAHSK----------------------------TQDLPAVTRRADVL 202 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEE
Confidence 78999999999875 699999998 5678999877532 13788999999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~ 276 (342)
+.++.- .++++.+. .|+|+++||+|--.+
T Consensus 203 IsAvGk----p~~i~~~~---vk~GavVIDVGin~~ 231 (287)
T PRK14173 203 VVAVGR----PHLITPEM---VRPGAVVVDVGINRV 231 (287)
T ss_pred EEecCC----cCccCHHH---cCCCCEEEEccCccc
Confidence 999974 47888776 479999999986553
No 115
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.10 E-value=9.1e-06 Score=75.33 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=70.8
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCc---EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
+|||||+|+||+.+++.|. ..|. .+.+++++++.. +.+...+ + +.....+.++++++||+|++|
T Consensus 2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence 6999999999999999874 4343 357888876542 2221111 0 112346788889999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
+| ......++.. + .+++|.++|.+. .-+..+.|.+.+..+
T Consensus 69 v~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 69 VR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred eC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 99 3444555433 3 357889999987 347888888887653
No 116
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=0.00013 Score=68.35 Aligned_cols=170 Identities=16% Similarity=0.232 Sum_probs=107.4
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+.. +.|+++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 53 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~~ 122 (282)
T PRK14169 53 RRAEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--K-------DVDGFSP 122 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--c-------CcccCCh
Confidence 44556788887766544 3577788766532 4589998864 244433 33333221 1 1222210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++= + .+.++.||++.|||-+. +|+++|
T Consensus 123 ~---N~g~l~~~~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvViGrS~iVGkPla 173 (282)
T PRK14169 123 V---SVGRLWANEPT-VVASTPYGIMALLD----A---------------------YDIDVAGKRVVIVGRSNIVGRPLA 173 (282)
T ss_pred h---hhHHHhcCCCC-CCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 0 01111122222 45566666554431 1 13578999999999986 699999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|+.+..+ ..++++..++||+|+.+++- .++|+.+.
T Consensus 174 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----p~~i~~~~--- 217 (282)
T PRK14169 174 GLM-VNHDATVTIAHSK----------------------------TRNLKQLTKEADILVVAVGV----PHFIGADA--- 217 (282)
T ss_pred HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH---
Confidence 998 5779999877432 13688999999999999974 46788874
Q ss_pred CCCCcEEEEcCCCc
Q 019387 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~ga~lINvaRG~ 275 (342)
.|+|+++||+|--.
T Consensus 218 vk~GavVIDvGin~ 231 (282)
T PRK14169 218 VKPGAVVIDVGISR 231 (282)
T ss_pred cCCCcEEEEeeccc
Confidence 67999999998533
No 117
>PRK07680 late competence protein ComER; Validated
Probab=98.09 E-value=2e-05 Score=73.72 Aligned_cols=104 Identities=19% Similarity=0.272 Sum_probs=70.8
Q ss_pred eEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
+|||||+|+||+.+++.|. ..| .+|.+|+++++.. +.+.+.+ .+.....+..+++.+||+|++
T Consensus 2 ~I~iIG~G~mG~ala~~L~-~~g~~~~~~v~v~~r~~~~~-~~~~~~~-----------~g~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFL-ESGAVKPSQLTITNRTPAKA-YHIKERY-----------PGIHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred EEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCHHHH-HHHHHHc-----------CCeEEECCHHHHHHhCCEEEE
Confidence 6999999999999999874 445 3799999987542 2221111 012233577888899999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
|+| ......++ ++....++++.++|+++-| +..+.|.+.+.
T Consensus 69 av~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 69 CVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred ecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 997 23444544 3334567788999999844 36676766554
No 118
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.08 E-value=1.9e-05 Score=67.97 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=57.7
Q ss_pred cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
.++.||++.|||-+. +|++++.+| ..-|+.|...+.+. .++++.+++||+
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~ADI 82 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRADI 82 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSSE
T ss_pred CCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------CcccceeeeccE
Confidence 579999999999995 999999998 67899998875432 478889999999
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~ 276 (342)
|+.+.+. .++|..+ ++|+|+++||++.-..
T Consensus 83 VVsa~G~----~~~i~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 83 VVSAVGK----PNLIKAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp EEE-SSS----TT-B-GG---GS-TTEEEEE--CEEE
T ss_pred Eeeeecc----ccccccc---cccCCcEEEecCCccc
Confidence 9999874 5677765 5689999999987665
No 119
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=0.00014 Score=68.16 Aligned_cols=169 Identities=16% Similarity=0.195 Sum_probs=105.7
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.++++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 122 (282)
T PRK14166 53 KACEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--K-------DVDGFHP 122 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence 44556788877765543 3577888776642 4689998864 244443 33332221 1 1222210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-...+........++.-++.++ ++ .+.++.||++.|||-+. +|+++|
T Consensus 123 ~---N~g~l~~g~~~~~~PcTp~avi~lL----~~---------------------y~i~l~Gk~vvVvGrS~iVGkPla 174 (282)
T PRK14166 123 I---NVGYLNLGLESGFLPCTPLGVMKLL----KA---------------------YEIDLEGKDAVIIGASNIVGRPMA 174 (282)
T ss_pred h---hhHHHhcCCCCCCcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 0 0011111111123455565555433 11 13578999999999986 699999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|+.+..+ ..++++..++||+|+.++.- .++|..+.
T Consensus 175 ~lL-~~~~atVt~chs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~--- 218 (282)
T PRK14166 175 TML-LNAGATVSVCHIK----------------------------TKDLSLYTRQADLIIVAAGC----VNLLRSDM--- 218 (282)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHH---
Confidence 998 5679999877532 14688999999999999974 46888875
Q ss_pred CCCCcEEEEcCC
Q 019387 262 MKKEAILVNCSR 273 (342)
Q Consensus 262 mk~ga~lINvaR 273 (342)
.|+|+++||+|-
T Consensus 219 vk~GavVIDvGi 230 (282)
T PRK14166 219 VKEGVIVVDVGI 230 (282)
T ss_pred cCCCCEEEEecc
Confidence 569999999984
No 120
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=0.00016 Score=68.28 Aligned_cols=171 Identities=20% Similarity=0.209 Sum_probs=107.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.++++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 124 (297)
T PRK14186 55 KACARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--K-------DADGLHP 124 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence 44566788887665543 3477777765531 4689998864 244433 33333221 1 2233221
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-...+.+. ....++.-++.++- . .+.++.||++.|||-+. +|+++|
T Consensus 125 ~---n~g~l~~~~~~-~~PcTp~aii~lL~----~---------------------~~i~l~Gk~vvVIGrS~iVGkPla 175 (297)
T PRK14186 125 L---NLGRLVKGEPG-LRSCTPAGVMRLLR----S---------------------QQIDIAGKKAVVVGRSILVGKPLA 175 (297)
T ss_pred h---hHHHHhCCCCC-CCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 1 11111122222 33455555543331 1 13578999999999986 699999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|..+... ..++++..++||+|+.+++- .+++..+.
T Consensus 176 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~--- 219 (297)
T PRK14186 176 LML-LAANATVTIAHSR----------------------------TQDLASITREADILVAAAGR----PNLIGAEM--- 219 (297)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH---
Confidence 998 5779999877432 14788999999999999984 36788765
Q ss_pred CCCCcEEEEcCCCcc
Q 019387 262 MKKEAILVNCSRGPV 276 (342)
Q Consensus 262 mk~ga~lINvaRG~~ 276 (342)
.|+|+++||+|--.+
T Consensus 220 ik~gavVIDvGin~~ 234 (297)
T PRK14186 220 VKPGAVVVDVGIHRL 234 (297)
T ss_pred cCCCCEEEEeccccc
Confidence 569999999986553
No 121
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=1.4e-05 Score=74.58 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=109.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+. ++.++++++.+ ..+++. +++..+-. | -+|.+--
T Consensus 49 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--K-------DVDGl~~ 118 (279)
T PRK14178 49 RACERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--K-------DVDGFHP 118 (279)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence 44566788887665544 357788876653 14688998864 344443 33332221 1 2233211
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC-HHHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G-~IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++ ++ .+.++.|+++.|+|.+ ..|+++|
T Consensus 119 ~---n~g~l~~~~~~-~~PcTp~av~~ll----~~---------------------~~i~l~Gk~V~ViGrs~~vGrpla 169 (279)
T PRK14178 119 L---NLGRLVSGLPG-FAPCTPNGIMTLL----HE---------------------YKISIAGKRAVVVGRSIDVGRPMA 169 (279)
T ss_pred h---hHHHHhCCCCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCccccHHHH
Confidence 0 01111122222 3455555555333 11 1357899999999999 9999999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..+|++|..+..+. .++.+.+++||+|+.+++. .+++.++.+
T Consensus 170 ~lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk----~~lv~~~~v-- 214 (279)
T PRK14178 170 ALL-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGK----AGFITPDMV-- 214 (279)
T ss_pred HHH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCc----ccccCHHHc--
Confidence 997 68999998876432 3688899999999999973 278998875
Q ss_pred CCCCcEEEEcCCCc
Q 019387 262 MKKEAILVNCSRGP 275 (342)
Q Consensus 262 mk~ga~lINvaRG~ 275 (342)
|+|+++||+|-..
T Consensus 215 -k~GavVIDVgi~~ 227 (279)
T PRK14178 215 -KPGATVIDVGINQ 227 (279)
T ss_pred -CCCcEEEEeeccc
Confidence 8999999998443
No 122
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=0.00071 Score=63.57 Aligned_cols=169 Identities=14% Similarity=0.193 Sum_probs=105.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++++.+.+. ++.|+|+++.+ ..+++. +++.++-. | -+|.+.-
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~ 124 (288)
T PRK14171 55 KNAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--K-------DIDGFHP 124 (288)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------ccccCCc
Confidence 44566788887665543 357788877664 24689998864 244443 33332211 1 2222210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-............++.-++.+ ++++ +.++.||++.|||-+. +|+++|
T Consensus 125 ~---N~g~l~~g~~~~~~PcTp~av~~l----L~~y---------------------~i~l~GK~vvViGrS~iVGkPla 176 (288)
T PRK14171 125 L---NVGYLHSGISQGFIPCTALGCLAV----IKKY---------------------EPNLTGKNVVIIGRSNIVGKPLS 176 (288)
T ss_pred c---chhhhhcCCCCCCcCCCHHHHHHH----HHHh---------------------CCCCCCCEEEEECCCCcchHHHH
Confidence 0 111112222122445555554432 2211 3578999999999986 699999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|..+..+ ..+|.+..++||+|+.++.- .++|..+.
T Consensus 177 ~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~--- 220 (288)
T PRK14171 177 ALL-LKENCSVTICHSK----------------------------THNLSSITSKADIVVAAIGS----PLKLTAEY--- 220 (288)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----CCccCHHH---
Confidence 998 5678999876532 14788999999999999873 36888865
Q ss_pred CCCCcEEEEcCC
Q 019387 262 MKKEAILVNCSR 273 (342)
Q Consensus 262 mk~ga~lINvaR 273 (342)
.|+|+++||+|-
T Consensus 221 vk~GavVIDvGi 232 (288)
T PRK14171 221 FNPESIVIDVGI 232 (288)
T ss_pred cCCCCEEEEeec
Confidence 569999999983
No 123
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.06 E-value=3.4e-05 Score=70.72 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=67.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcC--CcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~af--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+.+|||||.|+||+.+++.+++.. ..+ +++++++...+.+.+...+ +.....++++++.++|+|+
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~DiVi 71 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------------NVSTTTDWKQHVTSVDTIV 71 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------------CcEEeCChHHHHhcCCEEE
Confidence 568999999999999998874331 234 7778765333333322211 1122357888999999999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
+|+|.. ..+.++ ++.-..++ +.++|+++=| ++.+.|.+.+..+
T Consensus 72 iavp~~-~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 72 LAMPPS-AHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred EecCHH-HHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 999942 223333 22112233 5699999766 5666677666443
No 124
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.05 E-value=1.7e-05 Score=78.73 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=73.6
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.|++|+|+|.|.||+.+++.| ...| .+|++++++.+.. +.+...+ +.. .....++.+.+.++|+|
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~-------g~~---~i~~~~l~~~l~~aDvV 244 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKEL-------GGE---AVKFEDLEEYLAEADIV 244 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EeeHHHHHHHHhhCCEE
Confidence 36789999999999999999997 5789 6899999987532 2221111 110 11224677888999999
Q ss_pred EEcCCCCcccccccCHHHHhcCC----CCcEEEEcCCCcccCHH
Q 019387 241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGPVIDEV 280 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk----~ga~lINvaRG~~vd~~ 280 (342)
+.|++ .+..+++++.++.+. .+.++||.+...=||.+
T Consensus 245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~ 285 (417)
T TIGR01035 245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPA 285 (417)
T ss_pred EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChh
Confidence 99976 456788988887652 24599999865545543
No 125
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=0.00019 Score=67.06 Aligned_cols=185 Identities=17% Similarity=0.222 Sum_probs=112.2
Q ss_pred ceEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHH
Q 019387 15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAA 81 (342)
Q Consensus 15 ~~~vl~~~~~~~~~-~----~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~ 81 (342)
+..++...+-+.+. + .+..++.|.+++....++ ..+++|+.+.+.. +.++|+++.+ ..+++. +++.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~ 112 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNK 112 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhc
Confidence 44455554444422 1 344556788887665543 3567878765532 4689999864 244443 3333
Q ss_pred hhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccc
Q 019387 82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN 161 (342)
Q Consensus 82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~ 161 (342)
++-. | -+|.+--. ..|-.....++ ....++.-++.++ ++ .+.
T Consensus 113 I~p~--K-------DVDGl~~~---n~g~l~~g~~~-~~PcTp~av~~lL----~~---------------------~~i 154 (278)
T PRK14172 113 IDAN--K-------DIDCLTFI---SVGKFYKGEKC-FLPCTPNSVITLI----KS---------------------LNI 154 (278)
T ss_pred cCcc--c-------ccCccCHh---hHHHHhCCCCC-CcCCCHHHHHHHH----HH---------------------hCC
Confidence 2221 1 22222100 11111111222 3444555554332 21 135
Q ss_pred ccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
++.||++.|||-+. +|+++|.+| ..-|+.|+.++.+ ..++.+..++||+|
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL-~~~~AtVt~chs~----------------------------T~~l~~~~~~ADIv 205 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLL-LNENATVTICHSK----------------------------TKNLKEVCKKADIL 205 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEE
Confidence 78999999999985 699999998 5779999887532 13788999999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
+.+++. .++|..+. .|+|+++||+|--
T Consensus 206 IsAvGk----p~~i~~~~---ik~gavVIDvGin 232 (278)
T PRK14172 206 VVAIGR----PKFIDEEY---VKEGAIVIDVGTS 232 (278)
T ss_pred EEcCCC----cCccCHHH---cCCCcEEEEeecc
Confidence 999974 46788875 6799999999743
No 126
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.04 E-value=2.1e-05 Score=74.88 Aligned_cols=119 Identities=21% Similarity=0.213 Sum_probs=71.1
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH--Hh-hhhhhhhccCCCC--------ccccccCCHHHHh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQFLKANGEQP--------VTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~--------~~~~~~~~l~~ll 234 (342)
++|+|||.|.||..+|..|+ ..|.+|++||+++....... .+ .+.. ....+... .......++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la-~~G~~V~v~d~~~~~~~~~~~~~~~~l~~-l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFA-RAGHEVRLWDADPAAAAAAPAYIAGRLED-LAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred cEEEEECccHHHHHHHHHHH-HCCCeeEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 47999999999999999984 66999999999875321110 00 0000 01111100 0112346888899
Q ss_pred hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
++||+|+.|+|...+.+..+-++.-+..++..++...+. . .....+.+.+..
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts-~-~~~~~la~~~~~ 132 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTS-A-LLASAFTEHLAG 132 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC-C-CCHHHHHHhcCC
Confidence 999999999997654443333332233455555543333 3 345667777743
No 127
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.04 E-value=1.2e-05 Score=75.35 Aligned_cols=108 Identities=20% Similarity=0.346 Sum_probs=79.1
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
.+...+|.|+|.|-+|...|+. |-++|++|...|.+.+ ++....+.|... ..........+++.+.++|+|+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAki-A~glgA~Vtild~n~~-rl~~ldd~f~~r------v~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKI-AIGLGADVTILDLNID-RLRQLDDLFGGR------VHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCCCccEEEECCccccchHHHH-HhccCCeeEEEecCHH-HHhhhhHhhCce------eEEEEcCHHHHHHHhhhccEEE
Confidence 4667789999999999999998 5899999999999874 333322222110 0111223457889999999996
Q ss_pred Ec--CCCCcccccccCHHHHhcCCCCcEEEEcC--CCcccC
Q 019387 242 LH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVID 278 (342)
Q Consensus 242 l~--~pl~~~t~~li~~~~l~~mk~ga~lINva--RG~~vd 278 (342)
-. +|. .....++.++.+++||||+++||++ -|+++.
T Consensus 237 gaVLIpg-akaPkLvt~e~vk~MkpGsVivDVAiDqGGc~E 276 (371)
T COG0686 237 GAVLIPG-AKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFE 276 (371)
T ss_pred EEEEecC-CCCceehhHHHHHhcCCCcEEEEEEEcCCCcee
Confidence 54 453 5678899999999999999999986 555544
No 128
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.03 E-value=2.3e-05 Score=75.12 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=66.3
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHH--hhhhhhhhccC----CCCccccccCCHHHHhhcCCEE
Q 019387 168 VGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFV--TAYGQFLKANG----EQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 168 vgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~l~~ll~~aDiV 240 (342)
|||+|||+||+.+++.+.+.=+++++++ |..++ ...... ..|+.+..... ....+.....++++++.++|+|
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~-~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV 79 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPD-FEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV 79 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChH-HHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence 6999999999999998643457888865 53332 111111 12322210000 0001122245799999999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
+.|.| .+.+..+++.+.+|+++++|+-.-
T Consensus 80 ve~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 80 VDATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred EECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 99875 678899999999999999998754
No 129
>PLN00203 glutamyl-tRNA reductase
Probab=98.03 E-value=2.5e-05 Score=79.30 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=74.4
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
++.+++|+|||.|.||+.+++.| ...|+ +|++++++.+.. +.+...+. + ....+....++.+.+.++|+|
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~~------g-~~i~~~~~~dl~~al~~aDVV 333 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEFP------D-VEIIYKPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHhC------C-CceEeecHhhHHHHHhcCCEE
Confidence 37799999999999999999997 57887 799999987542 33222210 1 011122235677889999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCC-------CcEEEEcCCCcccC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKK-------EAILVNCSRGPVID 278 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~-------ga~lINvaRG~~vd 278 (342)
+.|.| ..+.+|.++.++.+++ .-+|||.+-..=||
T Consensus 334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId 375 (519)
T PLN00203 334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVG 375 (519)
T ss_pred EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence 99876 5567899999988743 24899988655444
No 130
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.02 E-value=1.9e-05 Score=69.48 Aligned_cols=140 Identities=16% Similarity=0.191 Sum_probs=85.1
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhh-hhhhhhccCCC-------CccccccCCHHHHhhc
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA-YGQFLKANGEQ-------PVTWKRASSMDEVLRE 236 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~--~~~~~-~~~~~~~~~~~-------~~~~~~~~~l~~ll~~ 236 (342)
+|+|||.|.||+.+|..++ ..|++|..||++++.... +.... +..+....... ........+++++. +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 6999999999999999985 569999999998864221 11111 11111111111 01223457888888 9
Q ss_pred CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH 311 (342)
Q Consensus 237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh 311 (342)
||+|+=++|-+-+.+.-+-++.=+.++++++|...+.+ +.-..|.+++. ..-+..++=.|.+.+ |-+-+.||
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~~P~~~~~lVEvv~~ 152 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFFNPPHLMPLVEVVPG 152 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-SSTTT--EEEEEE-
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEecccccccCceEEEeCC
Confidence 99999999988787777777777788999988776543 56677777774 344556666564322 44445555
No 131
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.02 E-value=0.00014 Score=69.63 Aligned_cols=171 Identities=14% Similarity=0.240 Sum_probs=107.3
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.|+|+++.+ ..+++. +++.+.-. | -+|.+--
T Consensus 109 K~a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--K-------DVDGl~p 178 (345)
T PLN02897 109 KACEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--K-------DVDGFHP 178 (345)
T ss_pred HHHHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CccCCCH
Confidence 44566788887765543 3477888776532 4688998854 345544 33322211 1 2233211
Q ss_pred hHHHhCCeeEec-CCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387 103 NAANKYGIAVGN-TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY 180 (342)
Q Consensus 103 ~~~~~~gI~V~n-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v 180 (342)
. ..|-.... ........++.-++.++- + .+.++.||++.|||-++ +|+++
T Consensus 179 ~---N~G~L~~~~~~~~~~PCTp~avi~LL~----~---------------------~~i~l~GK~vvVIGRS~iVGkPl 230 (345)
T PLN02897 179 L---NVGNLAMRGREPLFVSCTPKGCVELLI----R---------------------SGVEIAGKNAVVIGRSNIVGLPM 230 (345)
T ss_pred H---HHHHHhcCCCCCCCcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCccccHHH
Confidence 0 01111111 011245556666655441 1 23579999999999986 59999
Q ss_pred HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~ 260 (342)
|.+| ..-|+.|..+..+ ..++++..++||+|+.+++. .+++..+.
T Consensus 231 a~LL-~~~~ATVTicHs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~v~~d~-- 275 (345)
T PLN02897 231 SLLL-QRHDATVSTVHAF----------------------------TKDPEQITRKADIVIAAAGI----PNLVRGSW-- 275 (345)
T ss_pred HHHH-HHCCCEEEEEcCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH--
Confidence 9997 5678999876432 13688899999999999874 46788765
Q ss_pred cCCCCcEEEEcCCCc
Q 019387 261 TMKKEAILVNCSRGP 275 (342)
Q Consensus 261 ~mk~ga~lINvaRG~ 275 (342)
.|+|+++||+|--.
T Consensus 276 -vk~GavVIDVGin~ 289 (345)
T PLN02897 276 -LKPGAVVIDVGTTP 289 (345)
T ss_pred -cCCCCEEEEccccc
Confidence 56999999998533
No 132
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.01 E-value=2.9e-05 Score=76.38 Aligned_cols=119 Identities=13% Similarity=0.234 Sum_probs=76.2
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCC------CCccccccCCHHHHhhcCCEE
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE------QPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~ll~~aDiV 240 (342)
+|+|||+|.||..+|..++ .|.+|++||+.++. .+...+...... ..+. .........+..+++++||+|
T Consensus 2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~k-v~~l~~g~~~~~-e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v 77 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSR-VAMLNDRISPIV-DKEIQQFLQSDKIHFNATLDKNEAYRDADYV 77 (388)
T ss_pred EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHH-HHHHHcCCCCCC-CcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence 6999999999999998764 48999999998754 333222110000 0000 001111223466778999999
Q ss_pred EEcCCCCccc-ccccCH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 241 SLHPVLDKTT-YHLINK-------ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 241 ~l~~pl~~~t-~~li~~-------~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
++|+|...+- .+.++- +.+..+++|.++|+.|.-.+=..+.+.+.+.+.
T Consensus 78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~ 134 (388)
T PRK15057 78 IIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTE 134 (388)
T ss_pred EEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcC
Confidence 9999965221 122221 223337999999999998888888888877653
No 133
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=3e-05 Score=73.00 Aligned_cols=79 Identities=23% Similarity=0.324 Sum_probs=64.5
Q ss_pred cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
.++.||++.|+|.|. +|+++|..| ...|++|..+++.. .++.+.+++||+
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aDI 205 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQADI 205 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCCE
Confidence 578999999999998 999999997 57899999887621 367778899999
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
|+.+++. + ++++.+. +|+|++++|++-..
T Consensus 206 vI~AtG~-~---~~v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 206 IVGAVGK-P---ELIKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred EEEccCC-C---CcCCHHH---cCCCCEEEEEEEee
Confidence 9999962 2 3677654 78999999997543
No 134
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.00 E-value=4.6e-05 Score=58.62 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=54.1
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
..+.+++++|+|.|.+|+.+++.| ... +.+|.+||+ |+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di 57 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI 57 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence 357899999999999999999997 466 567776642 99
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
++.|.+. .+.+.++....+++++++++++
T Consensus 58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 58 LVTATPA----GVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence 9999874 4566666788899999999874
No 135
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.00 E-value=2.6e-05 Score=82.88 Aligned_cols=107 Identities=19% Similarity=0.148 Sum_probs=71.0
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
++|||||+|.||+++|+.+ +..| .+|++||++++..... . ..+.. .....++++++.++|+|++|
T Consensus 4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~~a-~--------~~g~~---~~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLELA-V--------SLGVI---DRGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHHHH-H--------HCCCC---CcccCCHHHHhcCCCEEEEC
Confidence 6899999999999999997 5666 5899999987542111 1 11111 01235678889999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
+|.. ....++. .....++++.++++++.-.-...+.+.+.+.
T Consensus 71 vp~~-~~~~vl~-~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~ 112 (735)
T PRK14806 71 VPVL-AMEKVLA-DLKPLLSEHAIVTDVGSTKGNVVDAARAVFG 112 (735)
T ss_pred CCHH-HHHHHHH-HHHHhcCCCcEEEEcCCCchHHHHHHHHhcc
Confidence 9953 3344432 3334568899999998754322444555443
No 136
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.99 E-value=3.6e-05 Score=71.87 Aligned_cols=108 Identities=19% Similarity=0.345 Sum_probs=70.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 166 QTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~a-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.+|||||+|.||+.+++.+.+. .++++. ++|++++.. +.+.+.+ +...+.++++++.++|+|++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~~------------~~~~~~~~~ell~~~DvVvi~ 68 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASKT------------GAKACLSIDELVEDVDLVVEC 68 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHhc------------CCeeECCHHHHhcCCCEEEEc
Confidence 3799999999999999987432 367744 688876532 2221111 112346899999999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM 291 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~---~aL~~aL~~g~i 291 (342)
.|. +... +-....++.|.-++..+-|.+.|. +.|.++.+++..
T Consensus 69 a~~--~~~~---~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~ 114 (265)
T PRK13304 69 ASV--NAVE---EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC 114 (265)
T ss_pred CCh--HHHH---HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence 873 2221 222334556766777888887764 456666666543
No 137
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=0.00071 Score=63.39 Aligned_cols=187 Identities=17% Similarity=0.143 Sum_probs=114.7
Q ss_pred ceEEEEeCCCCchH-----HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHH
Q 019387 15 KYRVVSTKPMPGTR-----WINLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAA 81 (342)
Q Consensus 15 ~~~vl~~~~~~~~~-----~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~ 81 (342)
+..++...+-+.+. -.+..++.|.+++....++ ..+++++.+.+. ++.++++++.+ ..+++. +++.
T Consensus 32 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~ 110 (282)
T PRK14182 32 GLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDA 110 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence 34444444444422 1344566788887766543 347787877663 24689998864 344443 3333
Q ss_pred hhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccc
Q 019387 82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN 161 (342)
Q Consensus 82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~ 161 (342)
++-. | -+|.+.- ...|-...+.++.....++.-++.++ ++ .+.
T Consensus 111 I~p~--K-------DVDGl~~---~n~g~l~~g~~~~~~PcTp~avi~ll----~~---------------------~~i 153 (282)
T PRK14182 111 ISPA--K-------DADGFHP---FNVGALSIGIAGVPRPCTPAGVMRML----DE---------------------ARV 153 (282)
T ss_pred cCcc--c-------CcCCCCH---hHHHHHhCCCCCCCCCCCHHHHHHHH----HH---------------------hCC
Confidence 2221 1 2333321 11122222333323445555555333 11 135
Q ss_pred ccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
++.||++.|||-+. +|+++|.+| ..-|+.|..+..+ ..++++..++||+|
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL-~~~~AtVtichs~----------------------------T~nl~~~~~~ADIv 204 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMML-LERHATVTIAHSR----------------------------TADLAGEVGRADIL 204 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEE
Confidence 78999999999986 699999998 5678999887532 13688899999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
+.+++- .++|..+. .|+|+++||+|--.
T Consensus 205 I~AvGk----~~~i~~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 205 VAAIGK----AELVKGAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred EEecCC----cCccCHHH---cCCCCEEEEeecee
Confidence 999973 56888865 56999999998544
No 138
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.97 E-value=0.00035 Score=67.25 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=105.4
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHh---C--CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALI---G--DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~---~--~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+ . ++.|+|+++.+ ..+++. +++.++-. | -+|.+--
T Consensus 126 K~~e~~GI~~~~~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~--K-------DVDGl~p 195 (364)
T PLN02616 126 KACDSVGINSFEVRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE--K-------DVDGFHP 195 (364)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence 44566787776655443 34777877666 2 24689998864 344443 33332221 1 2232211
Q ss_pred hHHHhCCeeEecC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387 103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY 180 (342)
Q Consensus 103 ~~~~~~gI~V~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v 180 (342)
. ..|-..... .......++.-++. ++++ .+.++.||++.|||-++ +|+++
T Consensus 196 ~---N~G~L~~g~~~~~f~PCTp~avie----lL~~---------------------y~i~l~GK~vvVIGRS~iVGkPL 247 (364)
T PLN02616 196 L---NIGRLAMRGREPLFVPCTPKGCIE----LLHR---------------------YNVEIKGKRAVVIGRSNIVGMPA 247 (364)
T ss_pred h---hhHHHhcCCCCCCCCCCCHHHHHH----HHHH---------------------hCCCCCCCEEEEECCCccccHHH
Confidence 0 011111110 11234455555442 2221 13578999999999986 69999
Q ss_pred HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~ 260 (342)
|.+| ..-|+.|..+..+ ..++++..++||+|+.++.. .++|..+.
T Consensus 248 a~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~ADIVIsAvGk----p~~i~~d~-- 292 (364)
T PLN02616 248 ALLL-QREDATVSIVHSR----------------------------TKNPEEITREADIIISAVGQ----PNMVRGSW-- 292 (364)
T ss_pred HHHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCcCCHHH--
Confidence 9998 5678999887432 14788999999999999874 46788865
Q ss_pred cCCCCcEEEEcCCCc
Q 019387 261 TMKKEAILVNCSRGP 275 (342)
Q Consensus 261 ~mk~ga~lINvaRG~ 275 (342)
.|+|+++||+|--.
T Consensus 293 -vK~GAvVIDVGIn~ 306 (364)
T PLN02616 293 -IKPGAVVIDVGINP 306 (364)
T ss_pred -cCCCCEEEeccccc
Confidence 56999999998533
No 139
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=0.00036 Score=65.83 Aligned_cols=171 Identities=14% Similarity=0.187 Sum_probs=105.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+.. +.++|+++.+ ..+++. +++.++-. | -+|.+--
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 123 (297)
T PRK14167 54 RDCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--K-------DVDGFHP 123 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence 44566788887766544 3567777665532 4589998864 244443 33332211 1 2222211
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-...+.+ .+...++.-++.++= . .+.++.||++.|||-+. +|+++|
T Consensus 124 ~---n~g~l~~g~~-~~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvViGrS~iVGkPla 174 (297)
T PRK14167 124 E---NVGRLVAGDA-RFKPCTPHGIQKLLA----A---------------------AGVDTEGADVVVVGRSDIVGKPMA 174 (297)
T ss_pred h---hhHHHhCCCC-CCCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCcccHHHHH
Confidence 0 0111111222 234555655554331 1 13578999999999986 699999
Q ss_pred HHHHhcC---CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHH
Q 019387 182 RMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (342)
Q Consensus 182 ~~l~~af---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~ 258 (342)
.+|.+.+ ++.|..+... ..++++..++||+|+.++.- .++|..+.
T Consensus 175 ~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~ 222 (297)
T PRK14167 175 NLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAAGV----PELIDGSM 222 (297)
T ss_pred HHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 9985443 7899876421 14788999999999998863 35888764
Q ss_pred HhcCCCCcEEEEcCCCc
Q 019387 259 LATMKKEAILVNCSRGP 275 (342)
Q Consensus 259 l~~mk~ga~lINvaRG~ 275 (342)
.|+|+++||+|--.
T Consensus 223 ---ik~gaiVIDvGin~ 236 (297)
T PRK14167 223 ---LSEGATVIDVGINR 236 (297)
T ss_pred ---cCCCCEEEEccccc
Confidence 67999999998543
No 140
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.93 E-value=4.2e-05 Score=73.53 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
-+++||||.|.+|+..++.++..+. -+|.+||++++.. +.+.+.+ ...+ ..+....+.++++++||+|++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~~----~~~g---~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALRA----SDYE---VPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----HhhC---CcEEEeCCHHHHhccCCEEEEe
Confidence 4689999999999998776643343 4789999988653 3332221 1111 1123357899999999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
+|. +.-++..+ .+|+|+.+.++|-
T Consensus 200 T~s---~~P~~~~~---~l~~g~~v~~vGs 223 (325)
T TIGR02371 200 TPS---RKPVVKAD---WVSEGTHINAIGA 223 (325)
T ss_pred cCC---CCcEecHH---HcCCCCEEEecCC
Confidence 874 44666654 4589999999983
No 141
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.93 E-value=5.2e-05 Score=66.98 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=69.7
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhccCCCCccccccCCHHHHhhcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~ll~~a 237 (342)
++|+|+|+|.+|-.+|..|| ..|.+|++||..++. .+...... .+++.... ..-......+.++.+.+|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~-v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEK-VEALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHH-HHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHH-HHHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence 48999999999999999985 789999999998753 33322210 00011000 001122346778888999
Q ss_pred CEEEEcCCCCcccccccC--------HHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHc
Q 019387 238 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALV-EHLKQ 288 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~--------~~~l~~mk~ga~lINvaRG~~vd~~aL~-~aL~~ 288 (342)
|++++|+|......+-.| +.....++++.++|.-|.-.+=..+.+. ..|++
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~ 137 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK 137 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence 999999985444333333 2455678899999999888776566444 44443
No 142
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.93 E-value=4.7e-05 Score=67.95 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=63.8
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
++++|+|.|+||..+|++++ ..|.+|.+-+++.++..+...+... .. . ...+.++..+.+|+|++.+|
T Consensus 2 ~~~~i~GtGniG~alA~~~a-~ag~eV~igs~r~~~~~~a~a~~l~--------~~--i-~~~~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLA-KAGHEVIIGSSRGPKALAAAAAALG--------PL--I-TGGSNEDAAALADVVVLAVP 69 (211)
T ss_pred cEEEEeccChHHHHHHHHHH-hCCCeEEEecCCChhHHHHHHHhhc--------cc--c-ccCChHHHHhcCCEEEEecc
Confidence 58999999999999999985 7799999886666554333222110 00 1 23577888999999999999
Q ss_pred CCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 246 LDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 246 l~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
.... .. +.++....++ |.++|++.-.
T Consensus 70 ~~a~-~~-v~~~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 70 FEAI-PD-VLAELRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHH-Hh-HHHHHHHHhC-CeEEEecCCC
Confidence 7322 22 2244444455 7888887653
No 143
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=0.0007 Score=63.57 Aligned_cols=171 Identities=16% Similarity=0.234 Sum_probs=106.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+. ++.++++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 49 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~--K-------DVDGl~p 118 (287)
T PRK14181 49 KKATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD--K-------DVDGLHP 118 (287)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc--c-------CcccCCh
Confidence 44556788887765543 347777776663 25689999864 244443 33332221 1 2232211
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-...+........++.-++.++ ++ .+.++.||++.|||-+. +|+++|
T Consensus 119 ~---n~g~l~~g~~~~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~iVGkPla 170 (287)
T PRK14181 119 V---NMGKLLLGETDGFIPCTPAGIIELL----KY---------------------YEIPLHGRHVAIVGRSNIVGKPLA 170 (287)
T ss_pred h---hHHHHhcCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 0 0111111221224455565555432 21 13578999999999986 699999
Q ss_pred HHHHhcC----CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387 182 RMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (342)
Q Consensus 182 ~~l~~af----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~ 257 (342)
.+|. .- ++.|+.+..+ ..++++.+++||+|+.+++. .+++..+
T Consensus 171 ~lL~-~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~ADIvV~AvG~----p~~i~~~ 217 (287)
T PRK14181 171 ALLM-QKHPDTNATVTLLHSQ----------------------------SENLTEILKTADIIIAAIGV----PLFIKEE 217 (287)
T ss_pred HHHH-hCcCCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHH
Confidence 9984 44 7888876432 14789999999999999974 3688887
Q ss_pred HHhcCCCCcEEEEcCCCc
Q 019387 258 RLATMKKEAILVNCSRGP 275 (342)
Q Consensus 258 ~l~~mk~ga~lINvaRG~ 275 (342)
. .|+|+++||+|--.
T Consensus 218 ~---ik~GavVIDvGin~ 232 (287)
T PRK14181 218 M---IAEKAVIVDVGTSR 232 (287)
T ss_pred H---cCCCCEEEEecccc
Confidence 5 56999999998544
No 144
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.90 E-value=0.00015 Score=61.07 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=65.5
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 160 ~~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD 238 (342)
+.++.||++.|+|-+. +|+.+|.+| ...|++|...+.+. .++++.+++||
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD 73 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD 73 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence 4678999999999875 689999987 57899998876431 36888999999
Q ss_pred EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
+|+.+++.. ++|+.+. +|+|++++|++...
T Consensus 74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence 999998753 6788765 77999999998766
No 145
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=0.00053 Score=64.59 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=105.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.|+++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 123 (293)
T PRK14185 54 KACEECGFKSSLIRYES-DVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--K-------DVDGFHP 123 (293)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcCCCCH
Confidence 44566788887665544 3467888765531 4689998864 244433 33332221 1 2333321
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-.....++ ....++.-++.++- + .+.++.||++.|||-+. +|+++|
T Consensus 124 ~---N~g~l~~~~~~-~~PcTp~av~~lL~----~---------------------~~i~l~GK~vvViGrS~iVGkPla 174 (293)
T PRK14185 124 I---NVGRMSIGLPC-FVSATPNGILELLK----R---------------------YHIETSGKKCVVLGRSNIVGKPMA 174 (293)
T ss_pred h---hHHHHhCCCCC-CCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 1 11111112222 44556665554331 1 13578999999999986 699999
Q ss_pred HHHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHH
Q 019387 182 RMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (342)
Q Consensus 182 ~~l~~a---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~ 258 (342)
.+|.+. +++.|..+..+ ..++.+..++||+|+.+++. .++|..+.
T Consensus 175 ~lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~ 222 (293)
T PRK14185 175 QLMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECLEADIIIAALGQ----PEFVKADM 222 (293)
T ss_pred HHHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 988432 37899876432 14788999999999999974 46788754
Q ss_pred HhcCCCCcEEEEcCCCc
Q 019387 259 LATMKKEAILVNCSRGP 275 (342)
Q Consensus 259 l~~mk~ga~lINvaRG~ 275 (342)
.|+|+++||+|--.
T Consensus 223 ---vk~gavVIDvGin~ 236 (293)
T PRK14185 223 ---VKEGAVVIDVGTTR 236 (293)
T ss_pred ---cCCCCEEEEecCcc
Confidence 67999999998533
No 146
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.88 E-value=5.8e-05 Score=75.10 Aligned_cols=102 Identities=22% Similarity=0.284 Sum_probs=71.2
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.|++|+|+|.|.||+.+++.| ...|+ +|++++++++.. ..+...+ +.. .....++.+.+.++|+|
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEF-------GGE---AIPLDELPEALAEADIV 246 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CCc---EeeHHHHHHHhccCCEE
Confidence 36789999999999999999997 68898 799999987542 2221111 110 11124567778899999
Q ss_pred EEcCCCCcccccccCHHHHhcC-----CCCcEEEEcCCCcccC
Q 019387 241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGPVID 278 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~m-----k~ga~lINvaRG~~vd 278 (342)
+.|+| ....++..+.++.+ +++.++||.+-..-+|
T Consensus 247 I~aT~---s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 247 ISSTG---APHPIIGKGMVERALKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred EECCC---CCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCc
Confidence 99986 34566788777654 3567899988544344
No 147
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.87 E-value=5.3e-05 Score=75.97 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEEEcCCCCccccc
Q 019387 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH 252 (342)
Q Consensus 176 IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~l~~pl~~~t~~ 252 (342)
||+.+|++|+ .-|.+|.+||++++.. +.+.+.. +. ..+.....+++++++. +|+|++|+|..+.+..
T Consensus 1 MG~~mA~nL~-~~G~~V~v~nrt~~~~-~~l~~~~-------g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIA-SHGYTVAVYNRTPEKT-DEFLAEE-------GK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHH-hCCCeEEEECCCHHHH-HHHHHhh-------CC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 7999999984 6799999999997643 3222110 10 0123345789998875 8999999999988888
Q ss_pred ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 253 li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
++ ...+..+.+|.++||.+....-|...+.+.+++..+.....=|.-.++
T Consensus 71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 88 467888999999999999999999999999988888776666777766
No 148
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.86 E-value=8.2e-05 Score=71.02 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=66.1
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+.|++|+|+|.|.||+.+++.| +..| .+|++++++++.. ..+...+ +.. .....++.+.+.++|+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKEL-------GGN---AVPLDELLELLNEADVVI 243 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EEeHHHHHHHHhcCCEEE
Confidence 6799999999999999999997 5555 5788999986532 2221222 111 111235778889999999
Q ss_pred EcCCCCcccccccCHHHHhcC-CCCcEEEEcCCCcccC
Q 019387 242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVID 278 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~m-k~ga~lINvaRG~~vd 278 (342)
.|.|.. +.+.++ +..+... +++.++||.+...-||
T Consensus 244 ~at~~~-~~~~~~-~~~~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 244 SATGAP-HYAKIV-ERAMKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred ECCCCC-chHHHH-HHHHhhCCCCCeEEEEeCCCCCCc
Confidence 999853 331222 2233322 3678999998644344
No 149
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.85 E-value=9.2e-05 Score=70.79 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=63.9
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
..++|+|+|.|.+|+.+++.++..++ .+|.+|++++++ .+.+.+.+ ...+ .......+.++++.+||+|+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~----~~~g---~~~~~~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAEL----RAQG---FDAEVVTDLEAAVRQADIISC 195 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----HhcC---CceEEeCCHHHHHhcCCEEEE
Confidence 36799999999999999986543355 579999998754 33333222 1111 112234788999999999988
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
|.|.+ ..++.. +.+++|+.+.-++
T Consensus 196 aT~s~---~pvl~~---~~l~~g~~i~~ig 219 (314)
T PRK06141 196 ATLST---EPLVRG---EWLKPGTHLDLVG 219 (314)
T ss_pred eeCCC---CCEecH---HHcCCCCEEEeeC
Confidence 87743 456665 4578998544444
No 150
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.82 E-value=2.5e-05 Score=64.78 Aligned_cols=92 Identities=23% Similarity=0.329 Sum_probs=52.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
..+|||||.|++|..+++.| +.-|.+|.+ |+++....... ... .......++++++.++|+++++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa~~a-~~~------------~~~~~~~~~~~~~~~aDlv~ia 75 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASAERA-AAF------------IGAGAILDLEEILRDADLVFIA 75 (127)
T ss_dssp --EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HHHHH-HC--------------TT-----TTGGGCC-SEEEE-
T ss_pred ccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCccccccc-ccc------------cccccccccccccccCCEEEEE
Confidence 45899999999999999998 677999886 46655332111 000 0111235778899999999999
Q ss_pred CCCCcccccccCHHHHhc--CCCCcEEEEcC
Q 019387 244 PVLDKTTYHLINKERLAT--MKKEAILVNCS 272 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~--mk~ga~lINva 272 (342)
+|.+. -.-+-++.-.. .++|.+++=+|
T Consensus 76 vpDda--I~~va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 76 VPDDA--IAEVAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp S-CCH--HHHHHHHHHCC--S-TT-EEEES-
T ss_pred echHH--HHHHHHHHHHhccCCCCcEEEECC
Confidence 99542 22222333333 57899999885
No 151
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=0.00074 Score=63.77 Aligned_cols=172 Identities=17% Similarity=0.201 Sum_probs=104.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.|+|+++.+ ..+++. +++.++-. | -+|.+--
T Consensus 56 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--K-------DVDGl~~ 125 (297)
T PRK14168 56 KTAHRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--K-------DVDGFHP 125 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------cccccCh
Confidence 44556787877665543 3578888766532 4689998864 244443 33222211 1 2222211
Q ss_pred hHHHhCCeeEecCC-CCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387 103 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY 180 (342)
Q Consensus 103 ~~~~~~gI~V~n~~-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v 180 (342)
. ..|-...+.. ..+...++.-++.++- . .+.++.||++.|||-+. +|+++
T Consensus 126 ~---n~g~l~~~~~~~~~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvViGrS~iVGkPl 177 (297)
T PRK14168 126 V---NVGRLMIGGDEVKFLPCTPAGIQEMLV----R---------------------SGVETSGAEVVVVGRSNIVGKPI 177 (297)
T ss_pred h---hHHHHhcCCCCCCCcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcccHHH
Confidence 0 0111111111 1234555555554332 1 13578999999999885 69999
Q ss_pred HHHHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387 181 ARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (342)
Q Consensus 181 A~~l~~a---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~ 257 (342)
|.+|.+. .++.|..+... ..++++..++||+|+.++.- .++|..+
T Consensus 178 a~lL~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvVsAvGk----p~~i~~~ 225 (297)
T PRK14168 178 ANMMTQKGPGANATVTIVHTR----------------------------SKNLARHCQRADILIVAAGV----PNLVKPE 225 (297)
T ss_pred HHHHHhcccCCCCEEEEecCC----------------------------CcCHHHHHhhCCEEEEecCC----cCccCHH
Confidence 9998432 27889876422 13688899999999999864 4678876
Q ss_pred HHhcCCCCcEEEEcCCCc
Q 019387 258 RLATMKKEAILVNCSRGP 275 (342)
Q Consensus 258 ~l~~mk~ga~lINvaRG~ 275 (342)
. .|+|+++||+|--.
T Consensus 226 ~---ik~gavVIDvGin~ 240 (297)
T PRK14168 226 W---IKPGATVIDVGVNR 240 (297)
T ss_pred H---cCCCCEEEecCCCc
Confidence 5 56999999998544
No 152
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.80 E-value=0.00014 Score=69.21 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=67.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
..++++|+|.|.+|+..++.++..++. +|.+|++++++ .+.+.+.+. .. ..... ..+.++++.++|+|+.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~~----~~---~~~~~-~~~~~~av~~aDiVit 194 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHAR----AL---GPTAE-PLDGEAIPEAVDLVVT 194 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHHH----hc---CCeeE-ECCHHHHhhcCCEEEE
Confidence 467999999999999999987444664 69999998754 333333221 11 11111 4688999999999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|.|.+ ..+|.. .+|||+.++.+|.
T Consensus 195 aT~s~---~Pl~~~----~~~~g~hi~~iGs 218 (304)
T PRK07340 195 ATTSR---TPVYPE----AARAGRLVVAVGA 218 (304)
T ss_pred ccCCC---CceeCc----cCCCCCEEEecCC
Confidence 99853 466654 3699999999983
No 153
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.78 E-value=0.0001 Score=68.43 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=65.6
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCC---cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
.+|+|||+|+||+.+|+.|. .-| .+|.+|+++++.. +.+...+ + .....+.++++.++|+|++
T Consensus 3 m~I~iIG~G~mG~~la~~l~-~~g~~~~~v~v~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~advVil 68 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLL-ASGVPAKDIIVSDPSPEKR-AALAEEY-------G-----VRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CEEEEEechHHHHHHHHHHH-hCCCCcceEEEEcCCHHHH-HHHHHhc-------C-----CeecCChHHHHhcCCEEEE
Confidence 47999999999999999874 456 6899999986542 2221111 1 1123577788899999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
|+|. ...+.++.. ....+ +..+|++.-|- ..+.+.+.+.
T Consensus 69 ~v~~-~~~~~v~~~-l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 69 AVKP-QVMEEVLSE-LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred EcCH-HHHHHHHHH-HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 9983 233333322 12222 45788776553 5666666654
No 154
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.77 E-value=0.00014 Score=69.47 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=61.1
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
+++||+|.|..|+.-++.++..++. +|.+|+|+++. .+++.+.+ .. ....+...++.++++++||+|+.|.
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~~----~~---~~~~v~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAARL----RD---LGVPVVAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHHH----HC---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHhh----cc---ccccceeccchhhhcccCCEEEEcc
Confidence 5899999999999999887555666 78999998753 34444332 22 1233445689999999999999998
Q ss_pred CCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (342)
Q Consensus 245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~ 276 (342)
|.+..+ -+++.+ .+++|+.++.+|....
T Consensus 201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence 865433 677765 6789999999986543
No 155
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00024 Score=66.13 Aligned_cols=100 Identities=24% Similarity=0.350 Sum_probs=72.3
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
++|||||.|+||++++.-|. .-| .+|++.+|+.+.+. .+.+.|+ . ....+.+++..++|+|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~-~~g~~~~~~I~v~~~~~e~~~-~l~~~~g-------~-----~~~~~~~~~~~~advv~ 67 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLL-KSGALPPEEIIVTNRSEEKRA-ALAAEYG-------V-----VTTTDNQEAVEEADVVF 67 (266)
T ss_pred ceEEEEccCHHHHHHHHHHH-hcCCCCcceEEEeCCCHHHHH-HHHHHcC-------C-----cccCcHHHHHhhCCEEE
Confidence 48999999999999998874 445 58999999887653 2333331 1 11467788999999999
Q ss_pred EcCCCCcccccccCHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 019387 242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk---~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
+++. |+ .-.+.++.++ ++.++|.++=| |..+.|.+.|.
T Consensus 68 LavK--Pq----~~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 68 LAVK--PQ----DLEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred EEeC--hH----hHHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 9986 32 2245566665 68999999876 56677887775
No 156
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.75 E-value=0.00022 Score=63.04 Aligned_cols=95 Identities=21% Similarity=0.243 Sum_probs=65.9
Q ss_pred cccccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc-----cCCHHH
Q 019387 159 VGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-----ASSMDE 232 (342)
Q Consensus 159 ~~~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~ 232 (342)
.+.++.||++.|||-+. +|+++|.+| ..-|+.|+.+|.+.-.. ...+........ ..++.+
T Consensus 56 ~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~------------~~~~~~~~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 56 YGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQV------------FTRGESIRHEKHHVTDEEAMTLD 122 (197)
T ss_pred cCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccc------------cccccccccccccccchhhHHHH
Confidence 36789999999999986 599999998 56799999987432110 000000000000 112788
Q ss_pred HhhcCCEEEEcCCCCcccccc-cCHHHHhcCCCCcEEEEcCC
Q 019387 233 VLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR 273 (342)
Q Consensus 233 ll~~aDiV~l~~pl~~~t~~l-i~~~~l~~mk~ga~lINvaR 273 (342)
.+++||+|+.+++. .++ |..+. .|+|+++||+|-
T Consensus 123 ~~~~ADIVIsAvG~----~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 123 CLSQSDVVITGVPS----PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred HhhhCCEEEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence 99999999999984 455 77765 569999999983
No 157
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.00028 Score=63.93 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=86.7
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH---hhcCCEEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---l~~aDiV~l 242 (342)
.++|+||+|+||..++++| ..-|-+|++||.++....+... .+ ....++++++ |..--+|-+
T Consensus 1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~~~~---------~g-----a~~a~sl~el~~~L~~pr~vWl 65 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEELKD---------EG-----ATGAASLDELVAKLSAPRIVWL 65 (300)
T ss_pred CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHHHHh---------cC-----CccccCHHHHHHhcCCCcEEEE
Confidence 3789999999999999997 6789999999999876533211 12 2234566665 456789999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV 298 (342)
.+|...-|...|+. .-..|.+|-++|+-+-..--|.....+.|++..|. .+||
T Consensus 66 MvPag~it~~vi~~-la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~ 118 (300)
T COG1023 66 MVPAGDITDAVIDD-LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDV 118 (300)
T ss_pred EccCCCchHHHHHH-HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEec
Confidence 99987777776654 44667889999999988888888888888877664 4564
No 158
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.72 E-value=0.00019 Score=67.35 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=74.5
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.++++.|+|.|.+|++++..| ...| .+|++++|+.+. .++..+.+. ... ...+ ..++.+.+.++|+|
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~-a~~l~~~~~----~~~--~~~~--~~~~~~~~~~~Div 189 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVER-AEELAKLFG----ALG--KAEL--DLELQEELADFDLI 189 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhh----hcc--ceee--cccchhccccCCEE
Confidence 57799999999999999999998 5889 689999998753 233222221 000 0111 11345677889999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~ 290 (342)
+.++|..-....-.+.-.+..++++.+++++.-.+. .+.=|.+|-+.|.
T Consensus 190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~-~T~ll~~A~~~G~ 238 (278)
T PRK00258 190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPL-PTPFLAWAKAQGA 238 (278)
T ss_pred EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCC-CCHHHHHHHHCcC
Confidence 999997543211111222356678899999977553 4443444444443
No 159
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.71 E-value=0.00028 Score=62.49 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=69.8
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC--CccccccCCHHHHhhcC
Q 019387 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREA 237 (342)
Q Consensus 161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~a 237 (342)
..+.++++.|+|- |.+|+.+++.|+ ..|.+|..++|+.+. .+...+.+.+ ..+.. ........++.+.+.++
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~ 98 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLER-AQKAADSLRA---RFGEGVGAVETSDDAARAAAIKGA 98 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHH-HHHHHHHHHh---hcCCcEEEeeCCCHHHHHHHHhcC
Confidence 4578999999995 999999999984 678899999987643 3332221110 00000 00011123455788999
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV 280 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~ 280 (342)
|+|+.+.|....+ .+. .-...+++.+++|+.+...++..
T Consensus 99 diVi~at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~~~~ 137 (194)
T cd01078 99 DVVFAAGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPVGIE 137 (194)
T ss_pred CEEEECCCCCcee--chh--hhcccCceeEEEEccCCCCCCcc
Confidence 9999998865431 111 11234568899999888766543
No 160
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00016 Score=67.57 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=104.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++++.+.+. ++.++++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 54 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~ 123 (281)
T PRK14183 54 KACDRVGIYSITHEMPS-TISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--K-------DVDGFHP 123 (281)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--h-------cccccCh
Confidence 44456787877665443 346777766553 14689998864 344443 33333221 1 1222210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC-HHHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G-~IG~~vA 181 (342)
. ..|-.....++ ....++.-++.++ ++ .+.++.||++.|||-| -+|+++|
T Consensus 124 ~---n~g~l~~g~~~-~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~~VG~Pla 174 (281)
T PRK14183 124 Y---NVGRLVTGLDG-FVPCTPLGVMELL----EE---------------------YEIDVKGKDVCVVGASNIVGKPMA 174 (281)
T ss_pred h---hhhHHhcCCCC-CCCCcHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCcchHHHH
Confidence 0 01111112222 3445555554332 21 1357999999999999 8899999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|..+..+ ..++.+..++||+|+.++.- .+++..+.
T Consensus 175 ~lL-~~~~AtVti~hs~----------------------------T~~l~~~~~~ADIvV~AvGk----p~~i~~~~--- 218 (281)
T PRK14183 175 ALL-LNANATVDICHIF----------------------------TKDLKAHTKKADIVIVGVGK----PNLITEDM--- 218 (281)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CcCHHHHHhhCCEEEEecCc----ccccCHHH---
Confidence 998 5678999876422 13688899999999999873 46788765
Q ss_pred CCCCcEEEEcCC
Q 019387 262 MKKEAILVNCSR 273 (342)
Q Consensus 262 mk~ga~lINvaR 273 (342)
.|+|+++||+|-
T Consensus 219 vk~gavvIDvGi 230 (281)
T PRK14183 219 VKEGAIVIDIGI 230 (281)
T ss_pred cCCCcEEEEeec
Confidence 569999999984
No 161
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.69 E-value=0.00021 Score=68.70 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=72.7
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcc-CCC----CccccccCCHHHHhhcCCEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQ----PVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~ll~~aDiV 240 (342)
.+|+|||.|.||..+|..|+ .-|.+|.+||+.+. .+... ..+...... +.. +.......+. +.+..+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~-~~G~~V~~~~r~~~--~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLA-AAGADVTLIGRARI--GDELR-AHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHHH-hcCCcEEEEecHHH--HHHHH-hcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 47999999999999999984 56899999998542 12111 111000000 000 0001112344 567899999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~ 293 (342)
++|+|. ++....+ +.....++++.++|.+.-| +-..+.+.+.+.+.++..
T Consensus 78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA 127 (341)
T ss_pred EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence 999985 4445444 3455567889999888544 444566777776555443
No 162
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.69 E-value=0.00016 Score=69.18 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=68.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
-++++|+|.|..|+.-++.++..+.. +|.+|+++++.. +++.+. .+.. ...+...++.++++++||+|+.|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~----~~~~---~~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQY----AQAL---GFAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhc---CCcEEEECCHHHHhcCCCEEEEe
Confidence 46999999999999999887545544 799999998653 333221 2111 12233457899999999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
.| .+.-+|..+ .+|+|+.++.+|
T Consensus 200 T~---s~~P~~~~~---~l~~G~hi~~iG 222 (315)
T PRK06823 200 TP---SREPLLQAE---DIQPGTHITAVG 222 (315)
T ss_pred cC---CCCceeCHH---HcCCCcEEEecC
Confidence 77 445777765 467999999997
No 163
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.68 E-value=0.00026 Score=68.02 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=66.5
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
..++++|+|.|.+|+..++.++...+. +|.+|+++++. .+++.+.+. .. .+..+....+++++++++|+|++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~-a~~~~~~~~----~~--~~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK-AYAFAQEIQ----SK--FNTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHHHHHH----Hh--cCCcEEEeCCHHHHHhcCCEEEE
Confidence 367999999999999998776444565 68899998754 333332221 11 01112235788999999999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|.|.. +-++. +.+|+|+.++.+|-
T Consensus 199 aT~s~---~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 199 VTNAK---TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred ccCCC---CcchH----HhcCCCcEEEecCC
Confidence 99854 34554 46699999988864
No 164
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.67 E-value=0.0002 Score=67.64 Aligned_cols=119 Identities=13% Similarity=0.226 Sum_probs=71.6
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcc-CCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
+|+|+|.|.||..+|..|+ .-|.+|.+|++ .+ ..+...+ .+...... +..........+.++....+|+|++|+|
T Consensus 2 kI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PK-RAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHH-HCCCceEEEec-HH-HHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 6999999999999999985 55899999998 33 3332211 11001100 0000011123456677789999999998
Q ss_pred CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
. .++...+ +......+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 78 ~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 78 A-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred c-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 5 3333333 2333345678888877555 34467777777655544
No 165
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00011 Score=69.53 Aligned_cols=107 Identities=13% Similarity=0.219 Sum_probs=79.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l~ 243 (342)
-++|||||+|++|+-.|+.| -..|..|...||..-....+ .| +....+.+.++. +++|+|.+|
T Consensus 52 tl~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa~---~y------------g~~~ft~lhdlcerhpDvvLlc 115 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAAE---KY------------GSAKFTLLHDLCERHPDVVLLC 115 (480)
T ss_pred ceEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHHH---Hh------------cccccccHHHHHhcCCCEEEEE
Confidence 35899999999999999998 57799999999876332221 11 122345677766 568999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
+-- ..+..++-.--++++|.|++++++-.-....-+++.+-|-+
T Consensus 116 tsi-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk 159 (480)
T KOG2380|consen 116 TSI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK 159 (480)
T ss_pred ehh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc
Confidence 753 45556666666788999999999988888888888888844
No 166
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.62 E-value=0.00043 Score=66.69 Aligned_cols=102 Identities=29% Similarity=0.384 Sum_probs=72.4
Q ss_pred ccccCCCeEEEEec-CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 160 ~~~L~gktvgIvG~-G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a 237 (342)
+..+.|++|.|+|. |.||+.+++.|+...|. +++.+++... +.......+ . .....++++.+.++
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~-rl~~La~el-------~-----~~~i~~l~~~l~~a 216 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE-RLQELQAEL-------G-----GGKILSLEEALPEA 216 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH-HHHHHHHHh-------c-----cccHHhHHHHHccC
Confidence 45689999999999 89999999998534564 8888888654 222221111 0 00124688999999
Q ss_pred CEEEEcCCCCccccc-ccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 019387 238 DVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDEV 280 (342)
Q Consensus 238 DiV~l~~pl~~~t~~-li~~~~l~~mk~ga~lINvaRG~~vd~~ 280 (342)
|+|+.+... ... .++.+.+ +++.++||+|+..=||.+
T Consensus 217 DiVv~~ts~---~~~~~I~~~~l---~~~~~viDiAvPRDVd~~ 254 (340)
T PRK14982 217 DIVVWVASM---PKGVEIDPETL---KKPCLMIDGGYPKNLDTK 254 (340)
T ss_pred CEEEECCcC---CcCCcCCHHHh---CCCeEEEEecCCCCCCcc
Confidence 999877642 234 4777654 799999999999888864
No 167
>PRK06046 alanine dehydrogenase; Validated
Probab=97.60 E-value=0.00045 Score=66.42 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=64.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
-+++||+|.|.+|+..++.++...+. +|.+||++++.. +++.+.+. .. .+..+....+++++++ +|+|++|
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~~----~~--~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERMS----SV--VGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHHH----hh--cCceEEEeCCHHHHhh-CCEEEEe
Confidence 36899999999999999887544566 566799987543 33322221 00 1112233568899987 9999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
.|. +.-+|..+. +|+|+.+..+|
T Consensus 201 Tps---~~P~~~~~~---l~~g~hV~~iG 223 (326)
T PRK06046 201 TPS---RKPVVKAEW---IKEGTHINAIG 223 (326)
T ss_pred cCC---CCcEecHHH---cCCCCEEEecC
Confidence 985 346777654 58999988887
No 168
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.58 E-value=0.00022 Score=66.31 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=61.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhc--C-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEG--F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~a--f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
.+|||||+|+||+++++.|.++ + .-++++++++.+.. ......+..+++.+||+|++
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~Vil 63 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDIIVL 63 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEEEE
Confidence 5899999999999999987432 1 12588888865321 01123466778889999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL 286 (342)
|+| ..++..++.+ ....++++ .+|.+.=| +..+.+.+.+
T Consensus 64 avk-p~~~~~vl~~-i~~~l~~~-~iIS~~aG--i~~~~l~~~~ 102 (260)
T PTZ00431 64 AVK-PDLAGKVLLE-IKPYLGSK-LLISICGG--LNLKTLEEMV 102 (260)
T ss_pred EeC-HHHHHHHHHH-HHhhccCC-EEEEEeCC--ccHHHHHHHc
Confidence 988 3445555543 22344544 55665444 4456565555
No 169
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.00032 Score=65.90 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=104.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.|+++++.+ ..+++. +++..+-. | -+|.+--
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~ 123 (286)
T PRK14184 54 RACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--K-------DVDGFHP 123 (286)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCH
Confidence 45566788887765543 3577877765531 4689998864 344443 23222211 1 2233211
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++ ++ .+.++.||++.|||-+. +|+++|
T Consensus 124 ~---N~g~l~~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla 174 (286)
T PRK14184 124 E---NMGRLALGLPG-FRPCTPAGVMTLL----ER---------------------YGLSPAGKKAVVVGRSNIVGKPLA 174 (286)
T ss_pred h---hHHHHhCCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 1 01111112222 3445555444322 21 13578999999999986 599999
Q ss_pred HHHHhc----CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387 182 RMMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (342)
Q Consensus 182 ~~l~~a----fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~ 257 (342)
.+| .. -+++|..+..+. .++.+.+++||+|+.+++ ..++|..+
T Consensus 175 ~lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~AvG----~p~li~~~ 221 (286)
T PRK14184 175 LML-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAIG----RPRFVTAD 221 (286)
T ss_pred HHH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecC----CCCcCCHH
Confidence 998 45 688988765321 368899999999999985 35789887
Q ss_pred HHhcCCCCcEEEEcCC
Q 019387 258 RLATMKKEAILVNCSR 273 (342)
Q Consensus 258 ~l~~mk~ga~lINvaR 273 (342)
.+ |+|+++||+|-
T Consensus 222 ~v---k~GavVIDVGi 234 (286)
T PRK14184 222 MV---KPGAVVVDVGI 234 (286)
T ss_pred Hc---CCCCEEEEeee
Confidence 76 89999999983
No 170
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.00032 Score=66.22 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=104.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHHH-HHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e~-l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+.. +.++++++.+ ..+++.. ++.++-. | -+|.+.-
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~--K-------DVDGl~~ 123 (295)
T PRK14174 54 KSCKEIGMNSTVIELPA-DTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA--K-------DVDGFHP 123 (295)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCh
Confidence 44566788887766544 3477777766532 4688998854 3455442 2322211 1 2222211
Q ss_pred hHHHhCCeeEecC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387 103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY 180 (342)
Q Consensus 103 ~~~~~~gI~V~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v 180 (342)
. ..|-...+. .......++.-++ .+++. .+.++.||++.|||-+. +|+++
T Consensus 124 ~---n~g~l~~~~~~~~~~PcTp~ail----~ll~~---------------------y~i~l~Gk~vvViGrS~iVG~Pl 175 (295)
T PRK14174 124 E---NLGRLVMGHLDKCFVSCTPYGIL----ELLGR---------------------YNIETKGKHCVVVGRSNIVGKPM 175 (295)
T ss_pred h---hHHHHhcCCCCCCcCCCCHHHHH----HHHHH---------------------hCCCCCCCEEEEECCCCcchHHH
Confidence 0 001111111 0123444555443 22221 13578999999999986 69999
Q ss_pred HHHHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387 181 ARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (342)
Q Consensus 181 A~~l~~a---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~ 257 (342)
|.+|.+. -+++|.....+. .++++.+++||+|+.+++. .++|..+
T Consensus 176 a~lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~~ADIvI~Avg~----~~li~~~ 223 (295)
T PRK14174 176 ANLMLQKLKESNCTVTICHSAT----------------------------KDIPSYTRQADILIAAIGK----ARFITAD 223 (295)
T ss_pred HHHHHhccccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCc----cCccCHH
Confidence 9987432 478887654321 3688899999999999963 2789998
Q ss_pred HHhcCCCCcEEEEcCCCc
Q 019387 258 RLATMKKEAILVNCSRGP 275 (342)
Q Consensus 258 ~l~~mk~ga~lINvaRG~ 275 (342)
.+ |+|+++||+|=-.
T Consensus 224 ~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 224 MV---KPGAVVIDVGINR 238 (295)
T ss_pred Hc---CCCCEEEEeeccc
Confidence 87 8999999998443
No 171
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.57 E-value=0.00037 Score=65.64 Aligned_cols=171 Identities=16% Similarity=0.211 Sum_probs=105.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhC----C-CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG----D-KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~----~-~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++++.+.+. + +.++|+++.+ ..+++. +++.++-. | -+|.+--
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 124 (294)
T PRK14187 55 RKAEMLGLRSETILLPS-TISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPE--K-------DVDGFHN 124 (294)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence 44556788887765543 346777765553 1 4588998854 344443 33333221 1 2222211
Q ss_pred hHHHhCCeeEecCC-CCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387 103 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY 180 (342)
Q Consensus 103 ~~~~~~gI~V~n~~-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v 180 (342)
. ..|-...+.. ......++.-++.++ +. .+.++.||++.|||-+. +|+++
T Consensus 125 ~---n~g~l~~g~~~~~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~iVGkPl 176 (294)
T PRK14187 125 E---NVGRLFTGQKKNCLIPCTPKGCLYLI----KT---------------------ITRNLSGSDAVVIGRSNIVGKPM 176 (294)
T ss_pred h---hHHHHhCCCCCCCccCcCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHH
Confidence 0 0111111111 123455555554332 21 13578999999999986 69999
Q ss_pred HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~ 260 (342)
|.+| ..-|+.|+.+..+ ..++.+..++||+|+.+++. .+++..+.
T Consensus 177 a~lL-~~~~aTVt~chs~----------------------------T~~l~~~~~~ADIvVsAvGk----p~~i~~~~-- 221 (294)
T PRK14187 177 ACLL-LGENCTVTTVHSA----------------------------TRDLADYCSKADILVAAVGI----PNFVKYSW-- 221 (294)
T ss_pred HHHH-hhCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH--
Confidence 9997 6789999987542 13688999999999999974 46788876
Q ss_pred cCCCCcEEEEcCCCc
Q 019387 261 TMKKEAILVNCSRGP 275 (342)
Q Consensus 261 ~mk~ga~lINvaRG~ 275 (342)
.|+|+++||+|--.
T Consensus 222 -ik~gaiVIDVGin~ 235 (294)
T PRK14187 222 -IKKGAIVIDVGINS 235 (294)
T ss_pred -cCCCCEEEEecccc
Confidence 55999999998543
No 172
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00075 Score=64.76 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=69.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
-+++||||.|..++.-++.+..-|+. +|.+|+++++.. +++. ..++..... .+....+.++++++||+|+.|
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a----~~l~~~~~~--~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFA----ARLRKRGGE--AVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHH----HHHHhhcCc--cceeccCHHHHhhcCCEEEEe
Confidence 35899999999999999987656776 788999998653 2222 222222221 233467899999999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
.|.++ -++..+. +|||+.+..+|
T Consensus 203 T~s~~---Pil~~~~---l~~G~hI~aiG 225 (330)
T COG2423 203 TPSTE---PVLKAEW---LKPGTHINAIG 225 (330)
T ss_pred cCCCC---CeecHhh---cCCCcEEEecC
Confidence 98654 6777765 55999999998
No 173
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.56 E-value=0.00039 Score=65.61 Aligned_cols=171 Identities=15% Similarity=0.197 Sum_probs=105.4
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.++|+++.+ ..+++. +++.++-. | -+|.+--
T Consensus 62 k~a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~--K-------DVDGl~~ 131 (299)
T PLN02516 62 KACAEVGIKSFDVDLPE-NISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE--K-------DVDGFHP 131 (299)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc--c-------ccCccCH
Confidence 44556787877665543 3477888766532 4679998854 244443 23222211 1 2222211
Q ss_pred hHHHhCCeeEecC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387 103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY 180 (342)
Q Consensus 103 ~~~~~~gI~V~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v 180 (342)
.. .|-..... .......++.-++.++ ++ .+.++.||++.|||-+. +|+++
T Consensus 132 ~n---~g~l~~~~~~~~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvVIGRS~iVGkPl 183 (299)
T PLN02516 132 LN---IGKLAMKGREPLFLPCTPKGCLELL----SR---------------------SGIPIKGKKAVVVGRSNIVGLPV 183 (299)
T ss_pred hh---HhhHhcCCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHH
Confidence 00 11111110 1123455555544332 21 13578999999999986 59999
Q ss_pred HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~ 260 (342)
|.+| ..-|+.|+.+... ..++++..++||+|+.++.- .++|..+.
T Consensus 184 a~lL-~~~~ATVtvchs~----------------------------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~-- 228 (299)
T PLN02516 184 SLLL-LKADATVTVVHSR----------------------------TPDPESIVREADIVIAAAGQ----AMMIKGDW-- 228 (299)
T ss_pred HHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHH--
Confidence 9998 5679999987532 13688999999999999864 37888765
Q ss_pred cCCCCcEEEEcCCCc
Q 019387 261 TMKKEAILVNCSRGP 275 (342)
Q Consensus 261 ~mk~ga~lINvaRG~ 275 (342)
.|+|+++||+|--.
T Consensus 229 -vk~gavVIDvGin~ 242 (299)
T PLN02516 229 -IKPGAAVIDVGTNA 242 (299)
T ss_pred -cCCCCEEEEeeccc
Confidence 56999999998543
No 174
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00039 Score=65.13 Aligned_cols=169 Identities=12% Similarity=0.190 Sum_probs=104.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+.+....++ ..+++|+.+.+.. +.++++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~ 123 (282)
T PRK14180 54 KACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--K-------DVDGFHP 123 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc--c-------cccccCh
Confidence 44556788887765543 3467777665532 4678998864 244443 33333221 1 2222210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-...+........+++-++.++= + .+.++.||++.|||-+. +|+++|
T Consensus 124 ~---n~g~l~~g~~~~~~PcTp~aii~lL~----~---------------------y~i~l~Gk~vvViGrS~~VGkPla 175 (282)
T PRK14180 124 T---NVGRLQLRDKKCLESCTPKGIMTMLR----E---------------------YGIKTEGAYAVVVGASNVVGKPVS 175 (282)
T ss_pred h---hHHHHhcCCCCCcCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 0 01111111111234455655553331 1 13578999999999985 699999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
.+| ..-|+.|..+..+. .++.+..++||+|+.+++- .++|..+.
T Consensus 176 ~lL-~~~~ATVt~chs~T----------------------------~dl~~~~k~ADIvIsAvGk----p~~i~~~~--- 219 (282)
T PRK14180 176 QLL-LNAKATVTTCHRFT----------------------------TDLKSHTTKADILIVAVGK----PNFITADM--- 219 (282)
T ss_pred HHH-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcCEEEEccCC----cCcCCHHH---
Confidence 998 56799998875321 4788889999999999974 46788765
Q ss_pred CCCCcEEEEcCC
Q 019387 262 MKKEAILVNCSR 273 (342)
Q Consensus 262 mk~ga~lINvaR 273 (342)
.|+|+++||+|-
T Consensus 220 vk~gavVIDvGi 231 (282)
T PRK14180 220 VKEGAVVIDVGI 231 (282)
T ss_pred cCCCcEEEEecc
Confidence 569999999984
No 175
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.54 E-value=0.0002 Score=67.01 Aligned_cols=91 Identities=25% Similarity=0.295 Sum_probs=64.8
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
-|.||+|+|||||+=|++=|..| +.-|.+|++--+......++.. . .++ ...+.+|+.++||+|.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~kA~--------~-----dGf-~V~~v~ea~k~ADvim 79 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKKAK--------E-----DGF-KVYTVEEAAKRADVVM 79 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHHHH--------h-----cCC-EeecHHHHhhcCCEEE
Confidence 58999999999999999999998 7889998764443332111111 1 112 3468999999999999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEE
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAIL 268 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~l 268 (342)
+.+|.. .-..++.++.-..||+|+.|
T Consensus 80 ~L~PDe-~q~~vy~~~I~p~Lk~G~aL 105 (338)
T COG0059 80 ILLPDE-QQKEVYEKEIAPNLKEGAAL 105 (338)
T ss_pred EeCchh-hHHHHHHHHhhhhhcCCceE
Confidence 999953 33455555666678888744
No 176
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.54 E-value=0.00064 Score=65.34 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=66.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.++++|+|.|.+|+..++.|+..++. +|.+|++++++ .+.+.+.+. .. .+..+....++++.+.+||+|+.|
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~-a~~~a~~~~----~~--~g~~v~~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK-AEALALQLS----SL--LGIDVTAATDPRAAMSGADIIVTT 201 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHH----hh--cCceEEEeCCHHHHhccCCEEEEe
Confidence 57999999999999999987434674 68899998754 333332221 10 011223357899999999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
.|. +.-+|..+. +|+|+.+..++
T Consensus 202 T~s---~~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 202 TPS---ETPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred cCC---CCcEecHHH---cCCCcEEEeeC
Confidence 885 335676654 68999888776
No 177
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.53 E-value=0.00032 Score=67.81 Aligned_cols=107 Identities=19% Similarity=0.315 Sum_probs=66.1
Q ss_pred eEEEEecCHHHHHHHHHHHh-c------CCcEEEEEcCCc---hhHHHHHHhhhhhhhhcc----C-CCCccccccCCHH
Q 019387 167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKAN----G-EQPVTWKRASSMD 231 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~-a------fg~~V~~~d~~~---~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~ 231 (342)
+|+|||.|+.|.++|..|+. + |+.+|..|.+.. ....... ........ + ..+.......+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~---in~~~~n~~ylpgi~Lp~~i~at~dl~ 77 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEI---INTTHENVKYLPGIKLPANLVAVPDLV 77 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHH---HHhcCCCccccCCCcCCCCeEEECCHH
Confidence 58999999999999998864 3 448999997732 1111111 11000000 0 0011222346899
Q ss_pred HHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (342)
Q Consensus 232 ~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd 278 (342)
++++.||+|++++|. ...+.++ ...-..++++..+|+++-|=-.+
T Consensus 78 eal~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 78 EAAKGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HHHhcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence 999999999999994 2333333 33334567889999998884443
No 178
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00049 Score=64.50 Aligned_cols=169 Identities=16% Similarity=0.232 Sum_probs=105.6
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccC
Q 019387 30 INLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVD 101 (342)
Q Consensus 30 ~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id 101 (342)
.+..++.|.+++....++ ..+++|+.+.+. ++.|+++++.+ ..+++. +++.++-. | -+|.+-
T Consensus 55 ~k~~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~ 124 (284)
T PRK14177 55 VKACHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--K-------DVDGVT 124 (284)
T ss_pred HHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------ccccCC
Confidence 344566788887765543 347777766553 24689998864 234433 33332211 1 222221
Q ss_pred hhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387 102 VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY 180 (342)
Q Consensus 102 ~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v 180 (342)
-. ..|-...+.+ .....++.-++.++ +. .+.++.||++.|||-+. +|+++
T Consensus 125 ~~---n~g~l~~g~~-~~~PcTp~avi~ll----~~---------------------y~i~l~Gk~vvViGrS~iVGkPl 175 (284)
T PRK14177 125 TL---SFGKLSMGVE-TYLPCTPYGMVLLL----KE---------------------YGIDVTGKNAVVVGRSPILGKPM 175 (284)
T ss_pred hh---hHHHHHcCCC-CCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHH
Confidence 10 1111112222 23445565555432 11 13578999999999985 69999
Q ss_pred HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~ 260 (342)
|.+| ..-|+.|+.++.+ ..++.+..++||+|+.+++- .++|..+.
T Consensus 176 a~lL-~~~~atVt~chs~----------------------------T~~l~~~~~~ADIvIsAvGk----~~~i~~~~-- 220 (284)
T PRK14177 176 AMLL-TEMNATVTLCHSK----------------------------TQNLPSIVRQADIIVGAVGK----PEFIKADW-- 220 (284)
T ss_pred HHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEeCCC----cCccCHHH--
Confidence 9998 5779999987642 14788899999999999874 46788765
Q ss_pred cCCCCcEEEEcCC
Q 019387 261 TMKKEAILVNCSR 273 (342)
Q Consensus 261 ~mk~ga~lINvaR 273 (342)
.|+|+++||+|-
T Consensus 221 -ik~gavVIDvGi 232 (284)
T PRK14177 221 -ISEGAVLLDAGY 232 (284)
T ss_pred -cCCCCEEEEecC
Confidence 569999999984
No 179
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.51 E-value=0.0013 Score=60.00 Aligned_cols=117 Identities=21% Similarity=0.309 Sum_probs=70.9
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCC---------chhHHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (342)
.++.|++|.|.|+|++|+.+|+.| ..+|++|++. |.. ....+.......+... ..... .. .+.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~---~~~~~--~~-~~~ 99 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVL---GFPGA--ER-ITN 99 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcc---cCCCc--ee-cCC
Confidence 468899999999999999999998 6899999954 431 1112221111111100 00000 00 111
Q ss_pred HHH-hhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 231 ~~l-l~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
+++ -.+||+++-|.+ .+.|+.+...+++ =.+++--+-+++ . ..-.+.|++..+.
T Consensus 100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~ 154 (227)
T cd01076 100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL 154 (227)
T ss_pred ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence 222 236899998875 4678888888887 336666667776 4 4456777776554
No 180
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.50 E-value=0.00063 Score=61.52 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=61.8
Q ss_pred eEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
+|+||| .|+||+.+|+.|+ ..|.+|.+++++++.. +.....+.......+. .... ...+..+.++++|+|++++|
T Consensus 2 kI~IIGG~G~mG~ala~~L~-~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~-~~~~-~~~~~~ea~~~aDvVilavp 77 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLA-KAGNKIIIGSRDLEKA-EEAAAKALEELGHGGS-DIKV-TGADNAEAAKRADVVILAVP 77 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHH-hCCCEEEEEEcCHHHH-HHHHHHHHhhccccCC-CceE-EEeChHHHHhcCCEEEEECC
Confidence 699997 9999999999984 6688999999876542 2221111000000010 0001 12356788899999999999
Q ss_pred CCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387 246 LDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (342)
Q Consensus 246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~ 276 (342)
.. ....++. +.-..++ +.++|++.-|--
T Consensus 78 ~~-~~~~~l~-~l~~~l~-~~vvI~~~ngi~ 105 (219)
T TIGR01915 78 WD-HVLKTLE-SLRDELS-GKLVISPVVPLA 105 (219)
T ss_pred HH-HHHHHHH-HHHHhcc-CCEEEEeccCce
Confidence 53 3333332 2212333 579999876643
No 181
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.49 E-value=0.00076 Score=64.13 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=66.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
-+++||+|.|..|+.-++.++.-++. +|.+|++++++. +++.+.+. .. .+..+....+.++++.+||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~~~----~~--~~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAERFS----KE--FGVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHHH----Hh--cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 46999999999999999887544555 789999997643 33333221 11 012233457899999999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
.|. +.-+|..+ .+|||+.+.-+|
T Consensus 190 T~s---~~P~~~~~---~l~pg~hV~aiG 212 (301)
T PRK06407 190 TNS---DTPIFNRK---YLGDEYHVNLAG 212 (301)
T ss_pred cCC---CCcEecHH---HcCCCceEEecC
Confidence 874 45777766 457887776665
No 182
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.47 E-value=0.00063 Score=63.85 Aligned_cols=171 Identities=20% Similarity=0.222 Sum_probs=106.3
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|.+++....++ ..+++|+.+.+.. +.++++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--K-------DVDGl~~ 124 (284)
T PRK14193 55 RDCAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--K-------DADGLHP 124 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------CccCCCh
Confidence 44556788877665543 3577888766532 4689998864 344443 33333221 1 2222210
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA 181 (342)
. ..|-...+.++ ....++.-++.++- . .+.++.||++.|||-+. +|+++|
T Consensus 125 ~---n~g~l~~~~~~-~~PcTp~av~~ll~----~---------------------~~i~l~Gk~vvViGrS~~VGkPla 175 (284)
T PRK14193 125 T---NLGRLVLNEPA-PLPCTPRGIVHLLR----R---------------------YDVELAGAHVVVIGRGVTVGRPIG 175 (284)
T ss_pred h---hhhHHhCCCCC-CCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 0 11111122222 34455555554331 1 13578999999999875 699999
Q ss_pred HHHHhc-CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387 182 RMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 182 ~~l~~a-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~ 260 (342)
.+|.+. -++.|..+... ..++.+..++||+|+.++.- .++|..+.
T Consensus 176 ~lL~~~~~~atVtvchs~----------------------------T~~l~~~~k~ADIvV~AvGk----p~~i~~~~-- 221 (284)
T PRK14193 176 LLLTRRSENATVTLCHTG----------------------------TRDLAAHTRRADIIVAAAGV----AHLVTADM-- 221 (284)
T ss_pred HHHhhccCCCEEEEeCCC----------------------------CCCHHHHHHhCCEEEEecCC----cCccCHHH--
Confidence 998421 68999877532 14788999999999999874 36888865
Q ss_pred cCCCCcEEEEcCCCc
Q 019387 261 TMKKEAILVNCSRGP 275 (342)
Q Consensus 261 ~mk~ga~lINvaRG~ 275 (342)
.|+|+++||+|--.
T Consensus 222 -ik~GavVIDvGin~ 235 (284)
T PRK14193 222 -VKPGAAVLDVGVSR 235 (284)
T ss_pred -cCCCCEEEEccccc
Confidence 56999999998654
No 183
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.45 E-value=0.00052 Score=61.37 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=71.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC---chhHHHH-H---------Hhhhhhhhhc-cCCCCccc-
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-F---------VTAYGQFLKA-NGEQPVTW- 224 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~---~~~~~~~-~---------~~~~~~~~~~-~~~~~~~~- 224 (342)
..|..++|+|+|.|.+|..+|..|+ ..|. +++.+|+. .+..... + .+.....+.. ........
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~ 95 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAY 95 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 4688999999999999999999985 5688 68899887 2210000 0 0000000000 00000000
Q ss_pred ---cccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 225 ---KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 225 ---~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
....++++++.++|+|+.| ..+++++.++.......+++..++...+-
T Consensus 96 ~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~ 146 (200)
T TIGR02354 96 DEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASGL 146 (200)
T ss_pred eeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEecc
Confidence 0123566788999999999 47889999999998898887776765433
No 184
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.42 E-value=0.00051 Score=63.94 Aligned_cols=211 Identities=17% Similarity=0.176 Sum_probs=127.7
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (342)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (342)
+..++.|...+....++ ..+++|+.+.+. .+.++|+++.+ ..+++. +++...- .--+|.+--
T Consensus 53 k~~~~iGi~~~~~~l~~-~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p---------~KDVDG~hp 122 (283)
T COG0190 53 KAAEEIGIASELYDLPE-DITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDP---------EKDVDGFHP 122 (283)
T ss_pred HHHHHcCCeeEEEeCCC-cCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCc---------CCCccccCh
Confidence 44566777777666543 357788876663 25789998853 234432 3332211 112333321
Q ss_pred hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHH-HHHHH
Q 019387 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA 181 (342)
Q Consensus 103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~I-G~~vA 181 (342)
..-|-...+ +...-..++..++ .+++.+ +.+|+||++.|||-++| |+++|
T Consensus 123 ---~N~g~L~~~-~~~~~PCTp~gi~----~ll~~~---------------------~i~l~Gk~~vVVGrS~iVGkPla 173 (283)
T COG0190 123 ---YNLGKLAQG-EPGFLPCTPAGIM----TLLEEY---------------------GIDLRGKNVVVVGRSNIVGKPLA 173 (283)
T ss_pred ---hHhcchhcC-CCCCCCCCHHHHH----HHHHHh---------------------CCCCCCCEEEEECCCCcCcHHHH
Confidence 112233333 3333344444443 223322 35799999999999985 99999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
..| ..-++.|.+...+- .++.+..++||+|+.++-. .++|.++ +
T Consensus 174 ~lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~ADIvv~AvG~----p~~i~~d---~ 217 (283)
T COG0190 174 LLL-LNANATVTVCHSRT----------------------------KDLASITKNADIVVVAVGK----PHFIKAD---M 217 (283)
T ss_pred HHH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCCEEEEecCC----ccccccc---c
Confidence 998 57899999875432 4788899999999999864 4677764 4
Q ss_pred CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCccccccccccccccccccccCchhhccccc
Q 019387 262 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKHISTQDRATSCPKLTREWPIYDNSC 335 (342)
Q Consensus 262 mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~ 335 (342)
.|+|+++|++|--.+-+ +++.| ||-..+. -.-.+||--+| ..+||-.|-++|...
T Consensus 218 vk~gavVIDVGinrv~~----------~kl~G---DVdf~~v~~~a~~iTPVPGG------VGPmTvamLl~Nt~~ 274 (283)
T COG0190 218 VKPGAVVIDVGINRVND----------GKLVG---DVDFDSVKEKASAITPVPGG------VGPMTVAMLLENTLK 274 (283)
T ss_pred ccCCCEEEecCCccccC----------CceEe---eccHHHHHHhhcccCCCCCc------cCHHHHHHHHHHHHH
Confidence 67999999998544333 45543 6655543 23345555333 346666666666543
No 185
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.42 E-value=0.00088 Score=65.70 Aligned_cols=101 Identities=20% Similarity=0.290 Sum_probs=69.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS 241 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~ 241 (342)
-+++||+|.|..|+.-++.++.-+. -+|.+|++++++ .+++.+.+. ... ... .+....+.++++++||+|+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~-a~~f~~~~~----~~~-~~~~~v~~~~s~~eav~~ADIVv 228 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKS-LDSFATWVA----ETY-PQITNVEVVDSIEEVVRGSDIVT 228 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHHHHHH----Hhc-CCCceEEEeCCHHHHHcCCCEEE
Confidence 4689999999999999988754453 389999999854 333333221 110 011 1334578999999999999
Q ss_pred EcCCCCc---ccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 242 LHPVLDK---TTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 242 l~~pl~~---~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
.|.+.+. .+.-+|..+ ++|+|+.++.++.-
T Consensus 229 taT~s~~~~~s~~Pv~~~~---~lkpG~hv~~ig~~ 261 (379)
T PRK06199 229 YCNSGETGDPSTYPYVKRE---WVKPGAFLLMPAAC 261 (379)
T ss_pred EccCCCCCCCCcCcEecHH---HcCCCcEEecCCcc
Confidence 9987543 345777765 46799988877653
No 186
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.42 E-value=0.0013 Score=61.96 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=75.0
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl 246 (342)
+|+|+|.|+||..+|..|+ .-|.+|..++++++. .+..... +... ..+..........+.+++ ..+|+|++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~-~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~-~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAH-LDALNEN-GLRL-EDGEITVPVLAADDPAEL-GPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHH-HHHHHHc-CCcc-cCCceeecccCCCChhHc-CCCCEEEEeccc
Confidence 6999999999999999985 568999999986543 2221110 0001 011100011123456665 899999999984
Q ss_pred CcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE--EecCCCCC
Q 019387 247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG--LDVFEVTE 303 (342)
Q Consensus 247 ~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aa--LDV~~~EP 303 (342)
.++..++. .....+.+++.+|...-| +-.++.+.+.+....+.++. ..++-.+|
T Consensus 77 -~~~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p 132 (304)
T PRK06522 77 -YQLPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGP 132 (304)
T ss_pred -ccHHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCC
Confidence 34433332 233445677888887776 33355666666555554332 23344455
No 187
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.42 E-value=0.0019 Score=64.15 Aligned_cols=101 Identities=16% Similarity=0.271 Sum_probs=68.1
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.|+++.|+|.|.||+.+++.| ...|+ ++++++|+... .+.+...++ . ......+++.+.+.++|+|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~r-a~~La~~~~-------~--~~~~~~~~l~~~l~~aDiV 246 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEK-AQKITSAFR-------N--ASAHYLSELPQLIKKADII 246 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHhc-------C--CeEecHHHHHHHhccCCEE
Confidence 46789999999999999999998 56785 79999998643 233322221 0 0112235677889999999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd 278 (342)
+.|.+. .+.+|..+... .+.-++||.+=..-||
T Consensus 247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLavPRdid 279 (414)
T PRK13940 247 IAAVNV---LEYIVTCKYVG--DKPRVFIDISIPQALD 279 (414)
T ss_pred EECcCC---CCeeECHHHhC--CCCeEEEEeCCCCCCC
Confidence 999874 34566666543 2345788877543333
No 188
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.41 E-value=0.00065 Score=66.23 Aligned_cols=111 Identities=19% Similarity=0.239 Sum_probs=66.4
Q ss_pred CeEEEEecCHHHHHHHHHHHhc------CCcEEEEEcCCchh----HHHHHHhh-hhhhhhccCCCCccccccCCHHHHh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQAT----RLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVL 234 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~a------fg~~V~~~d~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ll 234 (342)
.+|+|||.|+.|.++|..|+.. ||-+|..|.+.+.. ..+..... -...+...-.-+......+++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 5899999999999999998643 45788888776531 11111100 0000000001122233456889999
Q ss_pred hcCCEEEEcCCCCcccccccCHHHHh--cCCCCcEEEEcCCCcccC
Q 019387 235 READVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVID 278 (342)
Q Consensus 235 ~~aDiV~l~~pl~~~t~~li~~~~l~--~mk~ga~lINvaRG~~vd 278 (342)
+.||+|++++|. ...+.++.+ .-. .+++++.+|+++-|=-.+
T Consensus 92 ~~aDiIvlAVPs-q~l~~vl~~-l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 92 EDADLLIFVIPH-QFLESVLSQ-IKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred hcCCEEEEEcCh-HHHHHHHHH-hccccccCCCCEEEEEeCCcccC
Confidence 999999999994 233333322 212 456688999998775443
No 189
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.40 E-value=0.00097 Score=64.22 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.++++|+|.|.+|+..+..++...+ -+|.+|++++++ .+.+.+.+. .. ....+....++++++.+||+|+++
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~~----~~--~g~~v~~~~d~~~al~~aDiVi~a 204 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADLR----AE--LGIPVTVARDVHEAVAGADIIVTT 204 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHh----hc--cCceEEEeCCHHHHHccCCEEEEe
Confidence 5799999999999998887643455 478999998753 333332221 10 012223357899999999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINv 271 (342)
.|.. .-+|..+. +++|+.+.-+
T Consensus 205 T~s~---~p~i~~~~---l~~g~~v~~v 226 (330)
T PRK08291 205 TPSE---EPILKAEW---LHPGLHVTAM 226 (330)
T ss_pred eCCC---CcEecHHH---cCCCceEEee
Confidence 8853 45666644 5688766654
No 190
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.39 E-value=0.0012 Score=61.66 Aligned_cols=111 Identities=22% Similarity=0.212 Sum_probs=71.1
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH-HhhcCCEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~aDiV~ 241 (342)
..+++++|+|.|.+|++++..| ...|++|.+++++.++ .+.+.+.+. ..+. . ...++++ .+.++|+|+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~-~~~la~~~~----~~~~--~---~~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSK-AEELAERFQ----RYGE--I---QAFSMDELPLHRVDLII 183 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHH-HHHHHHHHh----hcCc--e---EEechhhhcccCccEEE
Confidence 4588999999999999999998 4678999999988643 222222211 1110 0 1123333 235799999
Q ss_pred EcCCCC--cccc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 242 LHPVLD--KTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 242 l~~pl~--~~t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
.|+|.. ++.. -.++ ++.++++.+++|+.-.+... .|.++.++.
T Consensus 184 natp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~ 229 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSL 229 (270)
T ss_pred ECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHC
Confidence 999974 2211 1232 35578999999998776543 466665544
No 191
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.37 E-value=0.00095 Score=64.64 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=66.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
-++++|+|.|..|+.-++.+..-+.. +|.+|+++++. .+++.+.+ .. ....+....+.++++++||+|+.+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~-a~~~~~~~----~~---~~~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAA-TAKLARNL----AG---PGLRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHH-HHHHHHHH----Hh---cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 36899999999999998876555655 78899998764 33333322 11 112233457899999999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
.|.+ +..-+|..+ .+|+|+.+.-+|
T Consensus 201 T~S~-~~~Pvl~~~---~lkpG~hV~aIG 225 (346)
T PRK07589 201 TADK-TNATILTDD---MVEPGMHINAVG 225 (346)
T ss_pred cCCC-CCCceecHH---HcCCCcEEEecC
Confidence 8732 223556664 568999877765
No 192
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.37 E-value=0.00062 Score=65.85 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019387 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (342)
Q Consensus 177 G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~ 256 (342)
|..+|..|+ .-|.+|++||+++....+...+. +...+ .....+..+++.+||+|++|+|....++.++ .
T Consensus 32 G~~MA~~La-~aG~~V~v~Dr~~~~l~~~~~~~----l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~ 100 (342)
T PRK12557 32 GSRMAIEFA-EAGHDVVLAEPNRSILSEELWKK----VEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K 100 (342)
T ss_pred HHHHHHHHH-hCCCeEEEEECCHHHhhHHHHHH----HHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence 678898874 56899999999875321111111 11112 2234577888999999999999654467776 4
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 019387 257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK 287 (342)
Q Consensus 257 ~~l~~mk~ga~lINvaRG~~vd~-~aL~~aL~ 287 (342)
.....+++|+++||++.+..... +.+.+.+.
T Consensus 101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence 67778899999999998876554 55556653
No 193
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.37 E-value=0.00072 Score=60.80 Aligned_cols=96 Identities=22% Similarity=0.339 Sum_probs=61.1
Q ss_pred eEEEEecCHHHHHHHHHHHhc-CCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 167 TVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~a-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
+|||||+|.||+.+.+.+..+ .+++ +.+||+..++..+. .. ........++++++++.|+++=|.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~-~~------------~~~~~~~s~ide~~~~~DlvVEaA 68 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL-EA------------SVGRRCVSDIDELIAEVDLVVEAA 68 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH-Hh------------hcCCCccccHHHHhhccceeeeeC
Confidence 799999999999999987322 3454 66899987653221 11 111123368899989999998776
Q ss_pred CCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 019387 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV 280 (342)
Q Consensus 245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~ 280 (342)
. ++. +-+-..+.++.|.-+|=+|-|.+.|+.
T Consensus 69 S--~~A---v~e~~~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 69 S--PEA---VREYVPKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred C--HHH---HHHHhHHHHhcCCCEEEEechhccChH
Confidence 4 221 222234455666666666677777654
No 194
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.32 E-value=0.0011 Score=66.91 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=76.9
Q ss_pred CeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhh--------hhhhhhccCCCCccccccCCHHHHhhc
Q 019387 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLRE 236 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~ll~~ 236 (342)
.+|+|+|+|.+|..+|-.|++ +.|.+|++||..++. .+..... ...+... .. .......+++++.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~-v~~l~~g~~~~~e~gl~ell~~-~~-~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR-IDAWNSDQLPIYEPGLDEVVKQ-CR-GKNLFFSTDVEKHVAE 78 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH-HHHHHcCCCccCCCCHHHHHHH-hh-cCCEEEEcCHHHHHhc
Confidence 479999999999999999864 357999999988754 3332211 0011000 00 0012233567788899
Q ss_pred CCEEEEcCCCCcccc-----------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 237 ADVISLHPVLDKTTY-----------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 237 aDiV~l~~pl~~~t~-----------~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
||++++|+|...... .+.. +..-..+++|.++|.-|.-..=..+.+.+-|.+
T Consensus 79 advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 79 ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 999999997432211 1221 335556789999998887776666778777765
No 195
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.29 E-value=0.00085 Score=64.88 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=64.1
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hhhhhhccCC-CCccccccCCHHHHhhcCCEEEEc
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGE-QPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.+|+|+|.|++|..+|..|+ .-| +|..|.++++. .+..... ........+. .+.......++++.++.+|+|+++
T Consensus 8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~-~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAET-ADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHH-HHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 57999999999999999985 456 67777766543 2221110 0000000000 011122346788889999999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~ 276 (342)
+|. ..++..+.. .-..++++..+|++.-|=-
T Consensus 85 vps-~~~~~vl~~-i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 85 VPS-HGFRGVLTE-LAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred eCH-HHHHHHHHH-HHhhcCCCCEEEEEEeCCc
Confidence 993 334444332 2345678888999887643
No 196
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.25 E-value=0.0029 Score=59.70 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=73.0
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.++++.|+|.|.+|++++..| ...|+ +|+++|+...+ .+.+.+.+. ... .........++.+.+.++|+|
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~k-a~~la~~l~----~~~-~~~~~~~~~~~~~~~~~aDiV 196 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPAR-AAALADELN----ARF-PAARATAGSDLAAALAAADGL 196 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHHH----hhC-CCeEEEeccchHhhhCCCCEE
Confidence 35689999999999999999997 57887 79999998653 233222211 000 001111224566677899999
Q ss_pred EEcCCCCccc--ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 241 SLHPVLDKTT--YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 241 ~l~~pl~~~t--~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
+.|.|..-.. .-.++. +.++++.+++|+.-.+. ++.=|.+|-+.|
T Consensus 197 InaTp~Gm~~~~~~~~~~---~~l~~~~~v~DivY~P~-~T~ll~~A~~~G 243 (284)
T PRK12549 197 VHATPTGMAKHPGLPLPA---ELLRPGLWVADIVYFPL-ETELLRAARALG 243 (284)
T ss_pred EECCcCCCCCCCCCCCCH---HHcCCCcEEEEeeeCCC-CCHHHHHHHHCC
Confidence 9998864211 112333 34677888888876663 344444444444
No 197
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.25 E-value=0.00095 Score=63.83 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=58.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
.+|||||+|+||+.+++.+.+.=++++.+ +|+++...... . .......+.++++.+.|+|++|.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~------------~---~~v~~~~d~~e~l~~iDVViIct 68 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT------------E---TPVYAVADDEKHLDDVDVLILCM 68 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh------------c---CCccccCCHHHhccCCCEEEEcC
Confidence 58999999999999999874334789885 78875332111 0 11112346777788999999999
Q ss_pred CCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 245 VLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 245 pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
|... + -......++.|.-+|+..
T Consensus 69 Ps~t--h---~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 69 GSAT--D---IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred CCcc--C---HHHHHHHHHcCCCEEECC
Confidence 8532 2 234445566777777764
No 198
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=97.25 E-value=0.062 Score=51.22 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=67.0
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+.|.+|+++|= +++.++.+..+ ..||++|.+..|..-...+...+....+....+ ..+....++++.++++|+|.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy 221 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIY 221 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence 77999999997 68888888886 689999999887543221221111000011111 12334579999999999997
Q ss_pred EcC--CCCc----------ccccccCHHHHhcCCCCcEEEEcC
Q 019387 242 LHP--VLDK----------TTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 242 l~~--pl~~----------~t~~li~~~~l~~mk~ga~lINva 272 (342)
.-. .... ....-++++.++.+|+++++.=+.
T Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 222 TDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred EcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 643 1111 123466788888888887776653
No 199
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.24 E-value=0.0029 Score=67.02 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=92.9
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH---HHhhhhhhhhccCCCC-------ccccccCCHHHHhh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~l~~ll~ 235 (342)
++|+|||.|.||..+|..++...|++|+.||++++..... ....+........... ......++++ .++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR-GFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-Hhc
Confidence 6899999999999999987535699999999987532111 1111111111111110 1122335664 568
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH 311 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh 311 (342)
+||+|+=++|-+.+.+.-+-++.=+.++|+++|...+.+ +....|.+.+.. .-+.+++--|.+-+ |-+-+.||
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~P~~~~~lVEvv~g 463 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFSPVEKMPLVEVIPH 463 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCCccccCceEEEECC
Confidence 999999999988888877777777889999999866543 566778887743 44567777664333 44555555
No 200
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.24 E-value=0.0014 Score=62.59 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=73.7
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
++|+|+|-|+-|.++|+.|+ .-|-+|..|.+.++...+-....-..-+......+.......+++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 58999999999999999985 45678888887764321111100000011122223344456789999999999999999
Q ss_pred CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 019387 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV 283 (342)
Q Consensus 246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~ 283 (342)
. ...+..+..- -..+++++.+|+++-|=-.+.-.+.
T Consensus 81 s-~~~r~v~~~l-~~~l~~~~~iv~~sKGie~~t~~l~ 116 (329)
T COG0240 81 S-QALREVLRQL-KPLLLKDAIIVSATKGLEPETGRLL 116 (329)
T ss_pred h-HHHHHHHHHH-hhhccCCCeEEEEeccccCCCcchH
Confidence 4 2333333322 2456899999999988655444443
No 201
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.21 E-value=0.0037 Score=66.12 Aligned_cols=142 Identities=14% Similarity=0.173 Sum_probs=91.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC-------ccccccCCHHHHhh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~l~~ll~ 235 (342)
++|+|||.|.||..+|..++...|++|+.||++++...... ...+........... ......++++ .++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence 57999999999999999874336999999999875321111 001111111111000 1122335665 578
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH 311 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh 311 (342)
+||+|+=++|-+.+.+.-+-++.=+.++++++|...+.+ +....|.++++. .-+.+++--|.+-+ |-+-+.|+
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~HffnP~~~~~lVEvv~g 458 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFSPVEKMPLVEVIPH 458 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCCccccCceEEEeCC
Confidence 999999999988888887777777888999888765443 555667787743 44567777664433 44445554
No 202
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.20 E-value=0.0019 Score=59.86 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=64.1
Q ss_pred CeEEEEecCHHHHHHHHHHHhc--CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH-hhcCCEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEG--FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS 241 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~a--fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-l~~aDiV~ 241 (342)
.+|||||+|.||+.+++.+.++ .++++. +|++.++ +.+.+.. . .....+++++ ....|+|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~-~~~~~~~---------~-----~~~~~~l~~ll~~~~DlVV 67 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAAD-LPPALAG---------R-----VALLDGLPGLLAWRPDLVV 67 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHH-HHHHhhc---------c-----CcccCCHHHHhhcCCCEEE
Confidence 5899999999999999987433 236655 4666542 2222110 0 2245789997 58899999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHc
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQ 288 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd---~~aL~~aL~~ 288 (342)
=|..- .-+-+--...++.|.-++=.|=|.+-| ++.|.++.++
T Consensus 68 E~A~~-----~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 68 EAAGQ-----QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred ECCCH-----HHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 88762 222233334455677777778888877 3444444443
No 203
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.20 E-value=0.0015 Score=62.75 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=58.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.|++|+|+|+|..|....+. |+++|++|+++|++.++.........+.++. ....+.++++-..+|+++.+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~--------~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKLELAKKLGADHVIN--------SSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHHHHHHHhCCcEEEE--------cCCchhhHHhHhhCcEEEEC
Confidence 48999999999999999998 5899999999999987542221111111110 00112334444448999888
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
.| ... - ...++.+++|..++-++=
T Consensus 237 v~-~~~-~----~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 237 VG-PAT-L----EPSLKALRRGGTLVLVGL 260 (339)
T ss_pred CC-hhh-H----HHHHHHHhcCCEEEEECC
Confidence 87 322 1 234455555555555443
No 204
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.20 E-value=0.0015 Score=62.92 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=65.1
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.|+++.|||.|.||+.+|+.| ...|. +|++.+|..... . |+. .....-+...++|+|
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~~--~----~~~-------------~~~~~~~~~~~~DvV 230 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLTL--P----YRT-------------VVREELSFQDPYDVI 230 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcccc--c----hhh-------------hhhhhhhcccCCCEE
Confidence 47899999999999999999998 57785 688998876320 0 100 000111345789999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~ 279 (342)
+.|...|......+..+.++..++ -+|||.+=..-||+
T Consensus 231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPRdId~ 268 (338)
T PRK00676 231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPRTFPW 268 (338)
T ss_pred EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCCCCcc
Confidence 987543444556677777665443 49999886655653
No 205
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.18 E-value=0.0024 Score=60.39 Aligned_cols=124 Identities=13% Similarity=0.145 Sum_probs=70.0
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCch--hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD 238 (342)
.+.||++.|+|-|.+|++++..| ...|++ |.+++|+.+ .+.+...+.+.............+....++++.+..+|
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence 36789999999999999999987 478986 999998762 22222222111000000000011111224455677899
Q ss_pred EEEEcCCCCcc--cc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 239 VISLHPVLDKT--TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 239 iV~l~~pl~~~--t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
+|+.++|..-. .. ..+. ....++++.+++++.-.+. ++.=|.+|-+.|
T Consensus 202 ilINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G 252 (289)
T PRK12548 202 ILVNATLVGMKPNDGETNIK--DTSVFRKDLVVADTVYNPK-KTKLLEDAEAAG 252 (289)
T ss_pred EEEEeCCCCCCCCCCCCCCC--cHHhcCCCCEEEEecCCCC-CCHHHHHHHHCC
Confidence 99999986421 11 1120 1244667778888766553 344444444444
No 206
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.18 E-value=0.0011 Score=59.49 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=51.4
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..|.|++|.|||.|.+|...++.| ...|++|+++++............ + ...+....-.++.+..+|+|
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~~--------~--~i~~~~~~~~~~~l~~adlV 74 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVEE--------G--KIRWKQKEFEPSDIVDAFLV 74 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHhC--------C--CEEEEecCCChhhcCCceEE
Confidence 468999999999999999999987 578999999988764443332110 1 01111111113456789999
Q ss_pred EEcCCCCc
Q 019387 241 SLHPVLDK 248 (342)
Q Consensus 241 ~l~~pl~~ 248 (342)
+.++...+
T Consensus 75 iaaT~d~e 82 (202)
T PRK06718 75 IAATNDPR 82 (202)
T ss_pred EEcCCCHH
Confidence 98876533
No 207
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.17 E-value=0.0012 Score=59.17 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=61.0
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHhhcCCE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV 239 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~aDi 239 (342)
..+.|++|.|||.|.+|..-++.| ..+|++|+++++...+....+.+ .+ ...+. .... .+.+.++|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~--~i~~~~~~~~-~~dl~~~~l 72 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QG--GITWLARCFD-ADILEGAFL 72 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cC--CEEEEeCCCC-HHHhCCcEE
Confidence 358899999999999999999998 57999999999887654433221 11 11111 1112 345688999
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINv 271 (342)
|+.+....+ +|.......+.-.++||+
T Consensus 73 Vi~at~d~~-----ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 73 VIAATDDEE-----LNRRVAHAARARGVPVNV 99 (205)
T ss_pred EEECCCCHH-----HHHHHHHHHHHcCCEEEE
Confidence 888865422 234444444445566765
No 208
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.17 E-value=0.00086 Score=54.86 Aligned_cols=96 Identities=16% Similarity=0.266 Sum_probs=53.4
Q ss_pred eEEEEe-cCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
+||||| .|.+|+.+.++|++...+++.. +++..+. ...+...+. ...+.....+.. .+.+ .+.++|+|++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~-g~~~~~~~~---~~~~~~~~~~~~-~~~~-~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSA-GKPLSEVFP---HPKGFEDLSVED-ADPE-ELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTT-TSBHHHTTG---GGTTTEEEBEEE-TSGH-HHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecccc-CCeeehhcc---ccccccceeEee-cchh-HhhcCCEEEecC
Confidence 699999 9999999999997777887664 4444411 011111110 000111111111 2333 459999999999
Q ss_pred CCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 245 VLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 245 pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|... ++.+. .. ..++|..+|+.+-
T Consensus 75 ~~~~-~~~~~-~~---~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 75 PHGA-SKELA-PK---LLKAGIKVIDLSG 98 (121)
T ss_dssp CHHH-HHHHH-HH---HHHTTSEEEESSS
T ss_pred chhH-HHHHH-HH---HhhCCcEEEeCCH
Confidence 8421 11111 11 1468899999874
No 209
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.15 E-value=0.0037 Score=66.31 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=93.0
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC-------ccccccCCHHHHhh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~l~~ll~ 235 (342)
++|+|||.|.||..+|..++ ..|.+|+.||.+++...... ...+........... .......++++ ++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 391 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG-FE 391 (715)
T ss_pred ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-hc
Confidence 58999999999999999986 56999999999876421111 111111111111000 11223356644 68
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH 311 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh 311 (342)
+||+|+=++|-+.+.+.-+-++.=..++++++|...+.+ +....|.+++.. .-+.+++--|.+-+ |-+-+.||
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P~~~~~lVEvv~g 466 (715)
T PRK11730 392 RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNPVHRMPLVEVIRG 466 (715)
T ss_pred CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCcccccceEEeeCC
Confidence 999999999988888888877777889999888765443 566778887753 44567777665444 44555555
No 210
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.12 E-value=0.0069 Score=54.89 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=69.1
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCc---------hhHHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (342)
.++.|++|.|.|||++|+.+|+.| ...|.+|++ .|.+. +...+.. ...... .............+
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~-~~~~~~---~~~~~~~~~~~~~l 93 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINYA-VALGGS---ARVKVQDYFPGEAI 93 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHHH-HhhCCc---cccCcccccCcccc
Confidence 468899999999999999999998 578887665 56544 0111111 110000 00000000001122
Q ss_pred HHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387 231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (342)
Q Consensus 231 ~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i 291 (342)
-+ ..||+++-|.+. +.|+.+....++ =.+++--+-+++-+ + -.+.|++..+
T Consensus 94 ~~--~~~DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~-~-a~~~L~~~Gi 144 (217)
T cd05211 94 LG--LDVDIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD-E-ALRILHERGI 144 (217)
T ss_pred ee--ccccEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH-H-HHHHHHHCCc
Confidence 22 379999988863 488888888887 34666677777655 3 4566655543
No 211
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=97.09 E-value=0.062 Score=51.79 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=66.6
Q ss_pred cCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 163 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 163 L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
+.|++|++||-+ ++.++++..+ ..||++|.+..|..-...+...+.........+ ..+...++++++++++|+|
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvv 228 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADVI 228 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEE
Confidence 689999999997 7888888886 589999998877543222222111101111112 1233457899999999999
Q ss_pred EEcCCC--Cc-----c-----cccccCHHHHh-cCCCCcEEEEcC
Q 019387 241 SLHPVL--DK-----T-----TYHLINKERLA-TMKKEAILVNCS 272 (342)
Q Consensus 241 ~l~~pl--~~-----~-----t~~li~~~~l~-~mk~ga~lINva 272 (342)
..-.-. .. + ...-++++.++ .+|++++|.=+.
T Consensus 229 yt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 229 YTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred EEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 774311 00 1 23445777777 478887776553
No 212
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.09 E-value=0.00043 Score=55.12 Aligned_cols=88 Identities=23% Similarity=0.215 Sum_probs=57.2
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
.+.|++|.|||.|.+|..-++.| ...|++|+++++.. ...+. . ..+. ...+++.+.++|+|+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~-------------~--i~~~-~~~~~~~l~~~~lV~ 65 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG-------------L--IQLI-RREFEEDLDGADLVF 65 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT-------------S--CEEE-ESS-GGGCTTESEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh-------------H--HHHH-hhhHHHHHhhheEEE
Confidence 57899999999999999999997 68999999999885 11111 0 1111 124455678899999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
.+.+. ++ +++......+.-.+++|++
T Consensus 66 ~at~d-~~----~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 66 AATDD-PE----LNEAIYADARARGILVNVV 91 (103)
T ss_dssp E-SS--HH----HHHHHHHHHHHTTSEEEET
T ss_pred ecCCC-HH----HHHHHHHHHhhCCEEEEEC
Confidence 88763 22 4455555556556788874
No 213
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.09 E-value=0.0021 Score=61.54 Aligned_cols=104 Identities=24% Similarity=0.356 Sum_probs=62.3
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hh-hhhhccCCCCccccccCCHHHHh-hcCCEEEEc
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YG-QFLKANGEQPVTWKRASSMDEVL-READVISLH 243 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l~ 243 (342)
+|+|+|.|+||..+|..|+ .-|.+|..|+++++. .+..... .. .+... ...+.......++++.+ ..+|+|+++
T Consensus 2 kI~IiGaGa~G~ala~~L~-~~g~~V~l~~r~~~~-~~~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 2 KISILGAGSFGTAIAIALS-SKKISVNLWGRNHTT-FESINTKRKNLKYLPT-CHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred EEEEECcCHHHHHHHHHHH-HCCCeEEEEecCHHH-HHHHHHcCCCcccCCC-CcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 6999999999999999984 568999999987642 2221110 00 00000 00011122335677766 589999999
Q ss_pred CCCCcccccccCHHHHh-cCCCCcEEEEcCCCc
Q 019387 244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGP 275 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~-~mk~ga~lINvaRG~ 275 (342)
+|. .++...+.. ... .++++..+|...-|=
T Consensus 79 vks-~~~~~~l~~-l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 79 VPT-QQLRTICQQ-LQDCHLKKNTPILICSKGI 109 (326)
T ss_pred eCH-HHHHHHHHH-HHHhcCCCCCEEEEEEcCe
Confidence 984 344444433 222 556677777776664
No 214
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=97.04 E-value=0.1 Score=50.39 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=66.2
Q ss_pred ccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 162 ~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
.+.|++|++||=+ ++.++.+..+ ..||++|.+..|..-...+...+....+....+ ..+....++++.++++|+
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv 228 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKESG---ARITVTDDIDKAVKGVDF 228 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4789999999986 6788888876 579999999887532211111110001111111 123345799999999999
Q ss_pred EEEcC----CCCcc---------cccccCHHHHhcC-CCCcEEEEcC
Q 019387 240 ISLHP----VLDKT---------TYHLINKERLATM-KKEAILVNCS 272 (342)
Q Consensus 240 V~l~~----pl~~~---------t~~li~~~~l~~m-k~ga~lINva 272 (342)
|..-. ....+ ...-++.+.++.. |++++|.-+.
T Consensus 229 Vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 229 VHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred EEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 97632 11000 1234677888876 7888887664
No 215
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.04 E-value=0.0037 Score=59.97 Aligned_cols=131 Identities=16% Similarity=0.257 Sum_probs=73.0
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+..++|+|||.|.||..+|..++ ..| .++..||...+.......+. .. ...............+.+ .+++||+|+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl-~~-~~~~~~~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDL-KH-FSTLVGSNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHH-hh-hccccCCCeEEEeCCCHH-HhCCCCEEE
Confidence 35679999999999999998864 445 68999998764321111111 00 000010111222235666 669999999
Q ss_pred EcC--CCCc-ccc--------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEEE--Ee
Q 019387 242 LHP--VLDK-TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD 297 (342)
Q Consensus 242 l~~--pl~~-~t~--------~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~--~g~i~~aa--LD 297 (342)
++. |..+ .++ .++- .+.+....|.+++||++--.-+-...+.+.-. ..++.|.+ ||
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 998 4332 111 1111 12344456788999986443333344444321 35666665 55
No 216
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.03 E-value=0.0057 Score=61.89 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=64.7
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
+..+.|++++|+|.|.+|++++..| ...|++|.++++..... +...+.+ +.. .....++.+ +.++|+
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~-------~~~---~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRC-------QGK---AFPLESLPE-LHRIDI 393 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHh-------ccc---eechhHhcc-cCCCCE
Confidence 3567899999999999999999998 57899999999876432 2221111 000 001122222 468999
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
|+.|+|..-. +.. .+. .+++++.-.+.... |.++.++
T Consensus 394 VInatP~g~~----~~~-~l~-----~~v~D~~Y~P~~T~--ll~~A~~ 430 (477)
T PRK09310 394 IINCLPPSVT----IPK-AFP-----PCVVDINTLPKHSP--YTQYARS 430 (477)
T ss_pred EEEcCCCCCc----chh-HHh-----hhEEeccCCCCCCH--HHHHHHH
Confidence 9999997532 221 221 27777776664433 5555544
No 217
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=97.01 E-value=0.16 Score=48.38 Aligned_cols=111 Identities=24% Similarity=0.324 Sum_probs=71.3
Q ss_pred ccCCCeEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387 162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 162 ~L~gktvgIvG~G---~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD 238 (342)
.+.|++|+++|-| ++.++.+..+ ..||++|.+..|..-...+.+.+. ....| ..+....++++.++++|
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~~a~~~aD 218 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKAKG---IKVRETESLEEVIDEAD 218 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHHcC---CEEEEECCHHHHhCCCC
Confidence 3789999999995 9999999986 589999999887643211221111 11111 22334579999999999
Q ss_pred EEEEcCCCCc------c-----cccccCHHHHhcCCCCcEEEEcC-CCcccCHH
Q 019387 239 VISLHPVLDK------T-----TYHLINKERLATMKKEAILVNCS-RGPVIDEV 280 (342)
Q Consensus 239 iV~l~~pl~~------~-----t~~li~~~~l~~mk~ga~lINva-RG~~vd~~ 280 (342)
+|..---..+ + ...-++++.++.+|++++|.-+. ||.=|+.+
T Consensus 219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~ 272 (301)
T TIGR00670 219 VLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDPS 272 (301)
T ss_pred EEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCHH
Confidence 9976321100 1 12345677888888888777553 65544443
No 218
>PLN02477 glutamate dehydrogenase
Probab=97.00 E-value=0.011 Score=58.58 Aligned_cols=117 Identities=25% Similarity=0.287 Sum_probs=72.8
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCC----------chhHHHHHHhhhhhhhhccCCCCccccccCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (342)
.++.|++|.|.|||++|+.+|+.| ...|++|++ .|.+ .+ .+.++....+.+ . +.. +....+.
T Consensus 202 ~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~-~L~~~k~~~g~l-~--~~~--~a~~i~~ 274 (410)
T PLN02477 202 KSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIP-ALRKHVAEGGGL-K--GFP--GGDPIDP 274 (410)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHH-HHHHHHHhcCch-h--ccc--cceEecC
Confidence 478999999999999999999997 688999994 4544 11 111111110000 0 000 0111111
Q ss_pred HHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 230 l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
-+-+...||+++-|. ..+.|+++....++ =.+++--+-+++ ..+ -.+.|++..|.
T Consensus 275 ~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~ 329 (410)
T PLN02477 275 DDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV 329 (410)
T ss_pred ccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence 122234799998774 35689998888886 347888889988 444 45777776553
No 219
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=97.00 E-value=0.14 Score=49.58 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=70.7
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.|++|+++|= .++.++++..+ ..||++|.+..|..-...+.............+ ..+....++++.++++|+|
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~eav~~aDvv 226 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSG---GSVLVTDDVDEAVKDADFV 226 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHHHhcC---CeEEEEcCHHHHhCCCCEE
Confidence 478999999997 57888888876 589999999887632111111110000001111 1233457999999999999
Q ss_pred EEcC-----CCCc---c------cccccCHHHHhcCCCCcEEEEcC---CCcccCH
Q 019387 241 SLHP-----VLDK---T------TYHLINKERLATMKKEAILVNCS---RGPVIDE 279 (342)
Q Consensus 241 ~l~~-----pl~~---~------t~~li~~~~l~~mk~ga~lINva---RG~~vd~ 279 (342)
..-. .... + ...-++++.++.+|++++|.-+. ||.=|+.
T Consensus 227 y~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~ 282 (338)
T PRK02255 227 YTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTD 282 (338)
T ss_pred EEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceecH
Confidence 8733 1100 0 12567888888888888887664 5544433
No 220
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.99 E-value=0.16 Score=48.49 Aligned_cols=110 Identities=20% Similarity=0.256 Sum_probs=70.0
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+.|++|+++|= +++.++.+..+ ..||++|....|..-...+...+. +....+ ..+....+++++++++|+|.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~---~~~~~g---~~~~~~~d~~~a~~~aDvvy 222 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEK---IAKETG---ASIEVTHDPKEAVKGADVVY 222 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHH---HHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence 67999999997 78999999986 689999999887542211111111 011111 12334579999999999998
Q ss_pred EcC----CCCc---c-----cccccCHHHHhcCCCCcEEEEcC---CCcccCH
Q 019387 242 LHP----VLDK---T-----TYHLINKERLATMKKEAILVNCS---RGPVIDE 279 (342)
Q Consensus 242 l~~----pl~~---~-----t~~li~~~~l~~mk~ga~lINva---RG~~vd~ 279 (342)
.-. .... + ...-++++.++.+|++++|.-+. ||.=|+.
T Consensus 223 ~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP~~R~~Ei~~ 275 (304)
T PRK00779 223 TDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTD 275 (304)
T ss_pred ecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCCccCCCcccH
Confidence 642 1101 1 23456778888888887776654 4543433
No 221
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.98 E-value=0.0041 Score=61.31 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=69.5
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.|.++++.|||.|-||.-+|+.| ...|. +|++.+|..+.. ...-..+ + ..+....++.+.+.++|+|
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA-~~La~~~-------~---~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERA-EELAKKL-------G---AEAVALEELLEALAEADVV 242 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHH-HHHHHHh-------C---CeeecHHHHHHhhhhCCEE
Confidence 38899999999999999999998 57774 788889887643 2111111 1 1222446778889999999
Q ss_pred EEcCCCCcccccccCHHHHhcCC---CCcEEEEcCCCcccCH
Q 019387 241 SLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDE 279 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk---~ga~lINvaRG~~vd~ 279 (342)
+.+.. ....+|..+.+...- +.-++||.+=..-|++
T Consensus 243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiavPRdie~ 281 (414)
T COG0373 243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAVPRDVEP 281 (414)
T ss_pred EEecC---CCccccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence 98864 445677766554431 1247788775544443
No 222
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.97 E-value=0.0046 Score=49.81 Aligned_cols=105 Identities=25% Similarity=0.336 Sum_probs=62.7
Q ss_pred eEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387 167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~a-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l 242 (342)
++||||+|.+|+...+.+.+. -+.++. ++|+.++. .+.+.+.+ +...+++++++++ +.|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~-~~~~~~~~------------~~~~~~~~~~ll~~~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPER-AEAFAEKY------------GIPVYTDLEELLADEDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHH-HHHHHHHT------------TSEEESSHHHHHHHTTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHH-HHHHHHHh------------cccchhHHHHHHHhhcCCEEEE
Confidence 799999999999998776433 367776 68888754 23322222 1224679999998 7899999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHc
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINv-aRG~~vd~~aL~~aL~~ 288 (342)
+.|. ..+.-+-...++.=+ .+++.- ---.+-+-+.|.++.++
T Consensus 69 ~tp~--~~h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 69 ATPP--SSHAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp ESSG--GGHHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHH
T ss_pred ecCC--cchHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHH
Confidence 9994 333222233333222 455542 11133444555555544
No 223
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.97 E-value=0.0064 Score=64.72 Aligned_cols=141 Identities=16% Similarity=0.181 Sum_probs=92.7
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC-------ccccccCCHHHHhh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~l~~ll~ 235 (342)
++|+|||.|.||..+|..++ ..|++|+.||+.++...... ...+........... .......+++ .++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 413 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFK 413 (737)
T ss_pred cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 57999999999999999875 55999999999886422111 111111111111100 1122335665 468
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH 311 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh 311 (342)
+||+|+=++|-+.+.+.-+-++.=+.++++++|...+. -++...|.+++.. .-+.+++.-|.+-+ |-+-+.++
T Consensus 414 ~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~-p~r~ig~Hff~P~~~m~LvEvv~g 488 (737)
T TIGR02441 414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSR-PEKVIGMHYFSPVDKMQLLEIITH 488 (737)
T ss_pred cCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCC-ccceEEEeccCCcccCceEEEeCC
Confidence 99999999998888888887777788999988875433 3667778888754 45567888775433 44444444
No 224
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.97 E-value=0.0016 Score=61.51 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=34.9
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~ 204 (342)
.|+.+||+|+|.+|+--.+. |+|||++|+++|+..+++.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kkee 220 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKKEE 220 (360)
T ss_pred CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhHHH
Confidence 79999999999999988887 79999999999998755433
No 225
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.95 E-value=0.0064 Score=60.68 Aligned_cols=120 Identities=12% Similarity=0.132 Sum_probs=72.5
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEE-c----------CCchhHHHHHHhhh-hhhhhccCCCCc-cccc
Q 019387 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D----------LYQATRLEKFVTAY-GQFLKANGEQPV-TWKR 226 (342)
Q Consensus 160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~-d----------~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 226 (342)
+.++.|++|.|.|||++|+.+|+.| ..+|++|++. | ...+ .+.++.+.. +.+ . +.... +. .
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~-~L~~~k~~~~~~l-~--~~~~~~~~-~ 300 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLE-KLKEIKEVRRGRI-S--EYAEEFGA-E 300 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHH-HHHHHHHhcCCch-h--hhhhhcCC-e
Confidence 3568999999999999999999998 6899999987 6 2221 111111100 000 0 00000 00 0
Q ss_pred cCCHHHHhh-cCCEEEEcCCCCcccccccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 227 ASSMDEVLR-EADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 227 ~~~l~~ll~-~aDiV~l~~pl~~~t~~li~~~~l~~mk--~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
..+.++++. .||+++-|.. .+.|+.+....++ +=.+++-.+-|++ +.+ -.+.|.+..|.
T Consensus 301 ~i~~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~ 362 (445)
T PRK09414 301 YLEGGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL 362 (445)
T ss_pred ecCCccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence 112333333 6999998865 5788888777773 2347777888887 444 45677766543
No 226
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.95 E-value=0.0037 Score=59.54 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=73.6
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
++|+|||.|.+|..+|..++ ..|. +|..+|...........+.+... .. ...........++++ +++||+|+++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~-~~-~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEAS-PV-GGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhh-hc-cCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 47999999999999999874 4443 89999986542211111111000 00 000112223357777 68999999998
Q ss_pred CCCccccc------------ccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE--Ee
Q 019387 245 VLDKTTYH------------LINK--ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD 297 (342)
Q Consensus 245 pl~~~t~~------------li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~a--L~~g~i~~aa--LD 297 (342)
+. |...+ ++-. +.+....+++.+|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 78 g~-p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 78 GL-PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 74 33222 1111 23344457889999976554444445555 4445666765 66
No 227
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.95 E-value=0.0039 Score=57.59 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=61.1
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
-++-|+|-|.+++++|+. ++.+|++|+++|++++... ...+..++.+....|
T Consensus 101 ~~L~IfGaG~va~~la~l-a~~lGf~V~v~D~R~~~~~---------------------------~~~~~~~~~~~~~~~ 152 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRA-LAPLPCRVTWVDSREAEFP---------------------------EDLPDGVATLVTDEP 152 (246)
T ss_pred CEEEEECCcHHHHHHHHH-HhcCCCEEEEEeCCccccc---------------------------ccCCCCceEEecCCH
Confidence 389999999999999998 5899999999998754110 000123333322222
Q ss_pred CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 019387 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 295 (342)
Q Consensus 246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aa 295 (342)
.+.+..+.++..+|=+.|+.-.|.+.|..+|++...+..+
T Consensus 153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~YIG 192 (246)
T TIGR02964 153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGDFAYFG 192 (246)
T ss_pred ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCCCcEEE
Confidence 2333445567777777899989999999998544443333
No 228
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.93 E-value=0.014 Score=53.88 Aligned_cols=123 Identities=22% Similarity=0.308 Sum_probs=72.9
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEE--------cCCchh--HHHHHHhhhhhhhhccCC-CCccccccCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQFLKANGE-QPVTWKRASS 229 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~--------d~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 229 (342)
.++.|+++.|-|+|++|+.+|+.| ...|++|++. |+..-. .+....+..+..+..... .+..... .+
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~-~~ 105 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEY-IP 105 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEE-EC
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeE-ec
Confidence 368999999999999999999998 5789998876 554321 112211121110000000 0000111 12
Q ss_pred HH-HHh-hcCCEEEEcCCCCcccccccCHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 230 MD-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 230 l~-~ll-~~aDiV~l~~pl~~~t~~li~~~~l~-~mk~ga-~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
-+ +++ ..||+++.|. ..+.|+.+... .++.|+ +++--+-+++- .++.. .|++..|.
T Consensus 106 ~~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 106 NDDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL 165 (244)
T ss_dssp HHCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred cccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence 21 444 5899999884 35788888888 777665 55566777765 55444 77776654
No 229
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.91 E-value=0.019 Score=53.26 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=71.8
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCc-----h----hHHHH---HHhhhhhhhhccCCCCcccccc
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ-----A----TRLEK---FVTAYGQFLKANGEQPVTWKRA 227 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~-----~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 227 (342)
.++.|+||.|.|||++|+.+|+.| ..+|++|++. |.+. . +.+.. ........+........+....
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 578999999999999999999998 6899999954 4111 0 00100 0000000000000000001111
Q ss_pred CCHHHH-hhcCCEEEEcCCCCcccccccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 228 SSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 228 ~~l~~l-l~~aDiV~l~~pl~~~t~~li~~~~l~~mk--~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
+-+++ -..||+++-|. +.+.|+.+....++ +=.+++-.+-|++-+ +-.+.|++..+.
T Consensus 113 -~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 113 -EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred -CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 22222 34699999774 56899999888884 234777778888754 345777766554
No 230
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.90 E-value=0.0098 Score=63.13 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=91.3
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC-------ccccccCCHHHHhh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~l~~ll~ 235 (342)
++|+|||.|.||..+|..++ ..|.+|+.||++++...... ...+........... .......+++ .++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD 391 (714)
T ss_pred ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 57999999999999999986 56999999999876422111 111111111111000 1122234554 468
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH 311 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh 311 (342)
+||+|+=++|-+.+.+.-+-++.=+.++++++|-..+.+ ++..+|.++++. .-+..++=-|.+-+ |-+-+.||
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~P~~~~~lvEvv~g 466 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFNPVHRMPLVEVIRG 466 (714)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCCCcccCceEeecCC
Confidence 999999999988888877777777889999988765443 566777787753 44456666554433 44445555
No 231
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.89 E-value=0.0039 Score=59.42 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=71.8
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-ccCCCCc-cccccCCHHHHhhcCCEEEEc
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPV-TWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.+|+|||.|.||..+|.+| ...|.+|.++.+........ .+..+. ..+.... ......+.+ .+..+|+|++|
T Consensus 6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila 79 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEAVRE----NGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG 79 (313)
T ss_pred cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHHHh----CCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence 5899999999999999998 46789999988865322111 010010 0111000 011112333 45789999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 295 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aa 295 (342)
++.. ++...+. .....+++++.++...-| +-.++.|.+.+-..++.++.
T Consensus 80 vK~~-~~~~~~~-~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 80 LKTT-ANALLAP-LIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred ecCC-ChHhHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 9853 3333222 223345678888887665 34667777777666666553
No 232
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.89 E-value=0.19 Score=48.50 Aligned_cols=107 Identities=11% Similarity=0.103 Sum_probs=66.8
Q ss_pred ccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 162 ~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
.+.|++|+++|-+ ++.++.+..+ ..||++|.+..|..-...+.+.+....+....+ ..+....++++.++++|+
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv 228 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADF 228 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4789999999976 7899998886 579999998877542111111111001111111 123345789999999999
Q ss_pred EEEcCC----C-Cc---c-----cccccCHHHHhcC-CCCcEEEEcC
Q 019387 240 ISLHPV----L-DK---T-----TYHLINKERLATM-KKEAILVNCS 272 (342)
Q Consensus 240 V~l~~p----l-~~---~-----t~~li~~~~l~~m-k~ga~lINva 272 (342)
|..-.- . .+ + -..-++.+.++.. |++++|.-+.
T Consensus 229 vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 229 IYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred EEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 976531 0 00 0 1344577888875 7888887764
No 233
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.88 E-value=0.002 Score=59.89 Aligned_cols=127 Identities=18% Similarity=0.280 Sum_probs=73.7
Q ss_pred EEEEec-CHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 168 vgIvG~-G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
|+|||. |.+|..+|..|+ .-| -++..||...+. .+............. ....+...+++.+.+++||+|++
T Consensus 1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~-l~~~~~dl~~~~~~~--~~~~i~~~~d~~~~~~~aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEK-LKGVAMDLQDAVEPL--ADIKVSITDDPYEAFKDADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCccc-chHHHHHHHHhhhhc--cCcEEEECCchHHHhCCCCEEEE
Confidence 589999 999999999874 445 689999987643 222211111111111 12233345677888999999998
Q ss_pred cCCCC--c---------ccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE-Eec
Q 019387 243 HPVLD--K---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG-LDV 298 (342)
Q Consensus 243 ~~pl~--~---------~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~a--L~~g~i~~aa-LDV 298 (342)
+.-.. + ++..++. .+.+....|.+.+||++-.-=+-...+.+. +...++.|.+ +|.
T Consensus 77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 65221 1 1111121 123444558899999963222333344444 3456788888 774
No 234
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.88 E-value=0.004 Score=51.26 Aligned_cols=110 Identities=25% Similarity=0.354 Sum_probs=60.7
Q ss_pred eEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 167 TVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvgIvG~-G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
+|+|+|+ |+||+.+++.+.+.-++++. ++++.++....+ ..+.+ .+..+.+....+++++++.++|+++-..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~g~~---~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DVGEL---AGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BCHHH---CTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hhhhh---hCcCCcccccchhHHHhcccCCEEEEcC
Confidence 7999999 99999999997544788866 577766221100 00000 1112334445689999999999997665
Q ss_pred CCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
+|+.-.-.-+.. ++.|.-+|--..|---++.+.++.+.
T Consensus 76 --~p~~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 76 --NPDAVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp ---HHHHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred --ChHHhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHh
Confidence 333222111222 23466666666666444444555544
No 235
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.81 E-value=0.0039 Score=55.79 Aligned_cols=98 Identities=22% Similarity=0.254 Sum_probs=61.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhccCCCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 221 (342)
..|.+++|.|+|+|.+|..+|+.|+ ..|+ ++..+|+..- .+.+...+...+.. ....
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~ 92 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN---SDIQ 92 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC---CCCE
Confidence 5689999999999999999999984 6787 7888887621 11111111110000 0000
Q ss_pred cc-cc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387 222 VT-WK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (342)
Q Consensus 222 ~~-~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk 263 (342)
.. .. ...+++++++++|+|+.|.. +.+++..+++...+..+
T Consensus 93 i~~~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 93 VTALKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT 137 (202)
T ss_pred EEEehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 00 00 11245678899999999885 56788888876655443
No 236
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.81 E-value=0.12 Score=49.95 Aligned_cols=107 Identities=13% Similarity=0.132 Sum_probs=66.1
Q ss_pred ccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 162 ~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
.+.|++|++||-+ ++.++++..+ ..||+++.+..|..-...+...+.........+ ..+....++++.++++|+
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDv 228 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADF 228 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4789999999976 6899999886 589999999887542221211111001111112 123345799999999999
Q ss_pred EEEcCCCCc-------------ccccccCHHHHhcC-CCCcEEEEcC
Q 019387 240 ISLHPVLDK-------------TTYHLINKERLATM-KKEAILVNCS 272 (342)
Q Consensus 240 V~l~~pl~~-------------~t~~li~~~~l~~m-k~ga~lINva 272 (342)
|..-.-... ....-++++.++.. |++++|.-+.
T Consensus 229 vytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 229 IYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred EEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence 987521110 11244567777764 6777776653
No 237
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.81 E-value=0.19 Score=48.47 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=66.3
Q ss_pred cCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 163 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 163 L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
+.|++|+++|=+ ++.++.+..+ ..||++|.+..|..-...+.............+ ..+....++++.++++|+|
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvv 228 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDVI 228 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEE
Confidence 679999999975 8889999886 689999999887532211111111000011111 1233457999999999999
Q ss_pred EEcCCCC--c------c-----cccccCHHHHhcCC-CCcEEEEcC
Q 019387 241 SLHPVLD--K------T-----TYHLINKERLATMK-KEAILVNCS 272 (342)
Q Consensus 241 ~l~~pl~--~------~-----t~~li~~~~l~~mk-~ga~lINva 272 (342)
..-.-.. . + ...-++++.++.++ ++++|.-+.
T Consensus 229 y~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 229 YTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred EECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 8742110 0 0 23456778888886 477776654
No 238
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.80 E-value=0.0027 Score=61.68 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=74.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccC-------CCCcc-ccccCCHHHHhhcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-------EQPVT-WKRASSMDEVLREA 237 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~l~~ll~~a 237 (342)
.+|||+|+|-||-++|-.++ .-|.+|++||.++.. .+.....-.. +..-+ ....+ ....++.++ ++.|
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~-Vd~ln~G~~~-i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~ 85 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKK-VDKLNRGESY-IEEPDLDEVVKEAVESGKLRATTDPEE-LKEC 85 (436)
T ss_pred eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHH-HHHHhCCcce-eecCcHHHHHHHHHhcCCceEecChhh-cccC
Confidence 68999999999999999885 569999999998753 2221110000 00000 00001 112234444 4589
Q ss_pred CEEEEcCCCCcccc-ccc------C--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 238 DVISLHPVLDKTTY-HLI------N--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 238 DiV~l~~pl~~~t~-~li------~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
|++++|+|. |-+. +-- + +..-.-||+|.++|==|.-..=.++.++.-|.+
T Consensus 86 dv~iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 86 DVFIICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred CEEEEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 999999983 4333 111 1 245567899999998777777677778777755
No 239
>PLN02527 aspartate carbamoyltransferase
Probab=96.79 E-value=0.28 Score=46.77 Aligned_cols=109 Identities=18% Similarity=0.309 Sum_probs=69.2
Q ss_pred cCCCeEEEEecC---HHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387 163 LKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 163 L~gktvgIvG~G---~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD 238 (342)
+.|++|+++|=+ ++.++.+..+ ..| |++|.+..|..-...+.+.+. +.. ....+....++++.+++||
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~---~g~~~~~~~d~~~a~~~aD 220 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKDY----LTS---KGVEWEESSDLMEVASKCD 220 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHHH----HHH---cCCEEEEEcCHHHHhCCCC
Confidence 779999999965 6899999886 456 999998877542111111111 111 1122334578999999999
Q ss_pred EEEEcCCCCc------c------cccccCHHHHhcCCCCcEEEEcC-CCcccCH
Q 019387 239 VISLHPVLDK------T------TYHLINKERLATMKKEAILVNCS-RGPVIDE 279 (342)
Q Consensus 239 iV~l~~pl~~------~------t~~li~~~~l~~mk~ga~lINva-RG~~vd~ 279 (342)
+|....-..+ + ...-++++.++..|++++|.-+. ||.=|+.
T Consensus 221 vvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~ 274 (306)
T PLN02527 221 VLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEITT 274 (306)
T ss_pred EEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccccH
Confidence 9977432111 0 12556778888888888777654 6643333
No 240
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.75 E-value=0.47 Score=45.21 Aligned_cols=101 Identities=24% Similarity=0.334 Sum_probs=68.5
Q ss_pred cCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 163 L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
+.|++|+++|= |++.++++..+ ..||+++.+..|..-.. + .. ..+....++++.++++|+
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~-~-------------~~--~~~~~~~d~~ea~~~aDv 216 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP-E-------------GM--PEYGVHTDLDEVIEDADV 216 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc-c-------------cc--cceEEECCHHHHhCCCCE
Confidence 77999999987 58999999986 68999999988754210 0 00 012345799999999999
Q ss_pred EEEcCCCCcc-------------cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387 240 ISLHPVLDKT-------------TYHLINKERLATMKKEAILVNCS---RGPVIDEV 280 (342)
Q Consensus 240 V~l~~pl~~~-------------t~~li~~~~l~~mk~ga~lINva---RG~~vd~~ 280 (342)
|....-..+. ....++++.++.+|++++|.=+- ||.=|+++
T Consensus 217 vyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~ 273 (305)
T PRK00856 217 VMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASD 273 (305)
T ss_pred EEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHH
Confidence 9764311111 12446777888888887776652 66555544
No 241
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.72 E-value=0.022 Score=48.89 Aligned_cols=113 Identities=18% Similarity=0.260 Sum_probs=72.6
Q ss_pred CCCeEEEEe--cCHHHHHHHHHHHhcCCcEEEEEcCCchh--HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 164 ~gktvgIvG--~G~IG~~vA~~l~~afg~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
.|++|+++| .+++.++++..+ ..||+++.+..|..-. ......+.........+ ..+....++++.++++|+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV 76 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence 388999999 489999999986 6899999999887621 21122211111111111 122334799999999999
Q ss_pred EEEcCCC----Ccc-------cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387 240 ISLHPVL----DKT-------TYHLINKERLATMKKEAILVNCS---RGPVIDEV 280 (342)
Q Consensus 240 V~l~~pl----~~~-------t~~li~~~~l~~mk~ga~lINva---RG~~vd~~ 280 (342)
|..-.-. .+. ..-.++++.++.+|++++|.-+. ||.=|+.+
T Consensus 77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~e 131 (158)
T PF00185_consen 77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDE 131 (158)
T ss_dssp EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHH
T ss_pred EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHh
Confidence 9665443 111 12567899999999999998875 56444443
No 242
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.71 E-value=0.018 Score=54.69 Aligned_cols=134 Identities=22% Similarity=0.264 Sum_probs=86.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh--hhccCCCCc--------cccccCCHHHHh
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF--LKANGEQPV--------TWKRASSMDEVL 234 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~l~~ll 234 (342)
-++|||||-|.||+.+|..++. -|.+|..+|++++............+ ...++.... ......++. .+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l 80 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-AL 80 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hh
Confidence 4789999999999999999754 56999999999653211111100000 011111100 111123333 67
Q ss_pred hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
++||+|+=.+|-+-+.++-+-++.=...+++++|-...++ +.-.++.+++ +..=+.+++=.|.+-|
T Consensus 81 ~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~-~rper~iG~HFfNP~~ 146 (307)
T COG1250 81 KDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEAL-KRPERFIGLHFFNPVP 146 (307)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHh-CCchhEEEEeccCCCC
Confidence 8999999999988888877777777778899988755443 5557788888 4455677777665544
No 243
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.65 E-value=0.0081 Score=56.05 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=59.5
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchh-HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.+|||+|+|+||+.+++.+.+.-++++.+ +++.... .... .+ + .+.....+++++-...|+|+.|
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~---~~-------~---~~~~~~~d~~~l~~~~DvVve~ 68 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRR---AL-------G---EAVRVVSSVDALPQRPDLVVEC 68 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhh---hh-------c---cCCeeeCCHHHhccCCCEEEEC
Confidence 37999999999999999874332566543 3332211 1111 00 0 0122346788874568999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM 291 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~---~aL~~aL~~g~i 291 (342)
.|.... -+-....++.|.-++-.+-|.+-|. +.|.++.+++..
T Consensus 69 t~~~~~-----~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 69 AGHAAL-----KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred CCHHHH-----HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 984321 1223333445555555555544443 345555555443
No 244
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.64 E-value=0.13 Score=50.02 Aligned_cols=106 Identities=21% Similarity=0.281 Sum_probs=64.4
Q ss_pred ccCCCeEEEEecC--------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH
Q 019387 162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (342)
Q Consensus 162 ~L~gktvgIvG~G--------~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 233 (342)
.|.|++|+|+|.| ++.++++..+ ..||++|.+..|..-...+...+.....+...+ ..+....++++.
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~~ea 242 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENG---GKFNIVNSMDEA 242 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 3789999999853 4557777776 579999999887642211111111001111112 223345799999
Q ss_pred hhcCCEEEEcCCC--------------Cc-----------------ccccccCHHHHhcCC-CCcEEEEc
Q 019387 234 LREADVISLHPVL--------------DK-----------------TTYHLINKERLATMK-KEAILVNC 271 (342)
Q Consensus 234 l~~aDiV~l~~pl--------------~~-----------------~t~~li~~~~l~~mk-~ga~lINv 271 (342)
++++|+|..-.-. .+ ....-++++.++.+| ++++|.-+
T Consensus 243 ~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHc 312 (357)
T TIGR03316 243 FKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHC 312 (357)
T ss_pred hCCCCEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECC
Confidence 9999999765310 00 012336778888887 77777765
No 245
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.63 E-value=0.005 Score=52.88 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=35.4
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
...|.|++|.|||-|.+|...++.| ...|++|.++++....
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~ 48 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICK 48 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCH
Confidence 3579999999999999999999987 5789999999866543
No 246
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.61 E-value=0.016 Score=54.55 Aligned_cols=78 Identities=21% Similarity=0.160 Sum_probs=51.4
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+.|+++.|||.|.+|++++..| ...|+ +|++++|+.++ .++..+.+.. ... ...+....++.+.+.++|+|+
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~k-a~~La~~~~~----~~~-~~~~~~~~~~~~~~~~~DiVI 195 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDK-LSRLVDLGVQ----VGV-ITRLEGDSGGLAIEKAAEVLV 195 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHH-HHHHHHHhhh----cCc-ceeccchhhhhhcccCCCEEE
Confidence 5789999999999999999997 57887 69999998653 2332222110 000 000101123445668899999
Q ss_pred EcCCCC
Q 019387 242 LHPVLD 247 (342)
Q Consensus 242 l~~pl~ 247 (342)
.|.|..
T Consensus 196 naTp~g 201 (282)
T TIGR01809 196 STVPAD 201 (282)
T ss_pred ECCCCC
Confidence 999974
No 247
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.60 E-value=0.011 Score=58.01 Aligned_cols=111 Identities=17% Similarity=0.079 Sum_probs=71.0
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
++|.|+|.|.||+.+|+.|+ .-| .+|++-||+.++..+..... ..+-............+.+++++.|+|+.|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la-~~~d~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLA-QNGDGEVTIADRSKEKCARIAELI----GGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHH-hCCCceEEEEeCCHHHHHHHHhhc----cccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 58999999999999999986 445 89999999976532221100 0000011122233457889999999999999
Q ss_pred CCCcccccccCHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 245 VLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 245 pl~~~t~~li~~~~l-~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
|. .++...+ +.++.|.-.++++-..--- -++-+.-++
T Consensus 77 p~------~~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~ 114 (389)
T COG1748 77 PP------FVDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKK 114 (389)
T ss_pred Cc------hhhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHH
Confidence 94 2333444 4557888899987655432 334443333
No 248
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=96.59 E-value=0.35 Score=48.19 Aligned_cols=103 Identities=14% Similarity=0.246 Sum_probs=68.0
Q ss_pred ccCCCeEEEEec---CHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387 162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 162 ~L~gktvgIvG~---G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a 237 (342)
.+.|++|++||= +++.++++..+ ..+ |++|.+..|..-...+...+. +... ...+....++++.++++
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRN---GHVIEQTDDLAAGLRGA 309 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhc---CCeEEEEcCHHHHhCCC
Confidence 478999999998 48999999886 455 999999887543211222111 1111 12233457999999999
Q ss_pred CEEEEcCCCCcc----------cccccCHHHHhc-CCCCcEEEEcC
Q 019387 238 DVISLHPVLDKT----------TYHLINKERLAT-MKKEAILVNCS 272 (342)
Q Consensus 238 DiV~l~~pl~~~----------t~~li~~~~l~~-mk~ga~lINva 272 (342)
|+|....-..+. ...-++++.++. .|++++|.-+.
T Consensus 310 DVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL 355 (429)
T PRK11891 310 DVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL 355 (429)
T ss_pred CEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence 999874422111 124568888888 88888887653
No 249
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.58 E-value=0.014 Score=58.16 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=70.0
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch----------hHHHHHHhhhhhhhhccCCCCc----ccc
Q 019387 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPV----TWK 225 (342)
Q Consensus 160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~----~~~ 225 (342)
|.+|.|++|.|.|+|++|+..|+.| ..+|++|++...... ..+. +...+.... ....... +..
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~~-~~~v~~~~~~~ga~ 299 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLY-RGRIREYAEKYGCK 299 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhhc-CCchhhhHhhcCCE
Confidence 4579999999999999999999998 689999998443110 0010 000000000 0000000 011
Q ss_pred ccCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 019387 226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQNPM 291 (342)
Q Consensus 226 ~~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~-ga-~lINvaRG~~vd~~aL~~aL~~g~i 291 (342)
..+-++++ ..|||++-|. +.+.|+++...+++. |. +++--+-| .+..++. +.|.+..|
T Consensus 300 -~i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI 360 (444)
T PRK14031 300 -YVEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKI 360 (444)
T ss_pred -EcCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCc
Confidence 11223332 4699998664 578999998888874 44 45555666 5666655 44544444
No 250
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.57 E-value=0.0058 Score=59.07 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=60.6
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--------------------hHHHHHHhhhhhhhhccCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------------TRLEKFVTAYGQFLKANGE 219 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~--------------------~~~~~~~~~~~~~~~~~~~ 219 (342)
..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|+..- .+.+...+..... ...
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i---np~ 95 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI---NSE 95 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH---CCC
Confidence 5789999999999999999999985 6787 7888887531 1111110100000 000
Q ss_pred CCc-ccc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387 220 QPV-TWK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 220 ~~~-~~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~ 260 (342)
... ... ...+++++++++|+|+.|. .+.+++.++|....+
T Consensus 96 v~i~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~ 139 (338)
T PRK12475 96 VEIVPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK 139 (338)
T ss_pred cEEEEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 000 000 1135788899999999998 467888888776544
No 251
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.56 E-value=0.019 Score=57.31 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=73.1
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEE--------EcCCchhH-----HHHHHhhhhhhhhc--cCCCCccc
Q 019387 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQATR-----LEKFVTAYGQFLKA--NGEQPVTW 224 (342)
Q Consensus 160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~--------~d~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~ 224 (342)
|.+|.|+||.|-|+|++|+..|+.| ..+|++|++ ||+..-.. +.++....+..... .+.. +.
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~--ga 299 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP--GS 299 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC--CC
Confidence 3578999999999999999999998 689999999 78553211 11111111100000 0100 11
Q ss_pred cccCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCC-C-CcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 225 KRASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK-K-EAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 225 ~~~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk-~-ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
... +-++++ ..||+++-|. +.+.|+.+....+. . =.+++--+-| .++.+| .+.|++..|.
T Consensus 300 ~~i-~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~ 362 (445)
T PRK14030 300 TFF-AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQL 362 (445)
T ss_pred EEc-CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCE
Confidence 111 222332 4599998764 57889988888772 2 2366667777 455554 3667666553
No 252
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.53 E-value=0.014 Score=58.77 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=70.3
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
-+.+++|+|+|+|..|.++|+.| +..|++|.++|.++.......... +...+. .+.......+.+.++|+|+
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~~----l~~~gi---~~~~~~~~~~~~~~~dlVV 82 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSNE----LKELGV---KLVLGENYLDKLDGFDVIF 82 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHHH----HHhCCC---EEEeCCCChHHhccCCEEE
Confidence 35689999999999999999997 799999999998753221110000 111111 1111122234457899998
Q ss_pred EcCCCCcccc-----------cccCHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 242 LHPVLDKTTY-----------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 242 l~~pl~~~t~-----------~li~~~-~l-~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
... .-+.+. .++++- .+ +..+...+-|-=+.|..-..+-|.+.|+.
T Consensus 83 ~Sp-gi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 83 KTP-SMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred ECC-CCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 873 322221 222222 22 22233456677778888888877777765
No 253
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.50 E-value=0.014 Score=56.44 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=45.6
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhh--hhhhhhc--cC--CCCccccccCCHHHHhhcCCE
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTA--YGQFLKA--NG--EQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~--~~~~~~~--~~--~~~~~~~~~~~l~~ll~~aDi 239 (342)
+|||+|+|+||+.+++.+...=++++.+ +|+.+ ......... ++..... .. ....+.....++++++.++|+
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~-~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKP-DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCCh-HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 7999999999999999874445788886 45443 211111110 1100000 00 000112223567888889999
Q ss_pred EEEcCCC
Q 019387 240 ISLHPVL 246 (342)
Q Consensus 240 V~l~~pl 246 (342)
|+.|.|.
T Consensus 82 VIdaT~~ 88 (341)
T PRK04207 82 VVDATPG 88 (341)
T ss_pred EEECCCc
Confidence 9999874
No 254
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.0051 Score=59.28 Aligned_cols=68 Identities=19% Similarity=0.331 Sum_probs=47.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
++||||||-|-.|+.++.. ++.+|.+|++.|+.+....... .. ......+.....+.++.+.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~v--------a~-~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQV--------AD-RVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhc--------cc-ceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999998 6899999999998876432110 00 0001111122367899999999953
No 255
>PLN02342 ornithine carbamoyltransferase
Probab=96.45 E-value=0.5 Score=45.89 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=66.3
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.|++|+++|= .++.++++..+ ..||++|.+..|..-...+...+. ....+. ..+....++++.++++|+|
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVv 263 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVV 263 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence 378999999986 35777777775 579999998887543221111111 011111 1233457999999999999
Q ss_pred EEcC----CCCcc--------cccccCHHHHhcCCCCcEEEEcC
Q 019387 241 SLHP----VLDKT--------TYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 241 ~l~~----pl~~~--------t~~li~~~~l~~mk~ga~lINva 272 (342)
..-. -..++ ...-++++.++.+|++++|.-+.
T Consensus 264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 8753 11111 12566888888888888776664
No 256
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.42 E-value=0.015 Score=46.39 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019387 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254 (342)
Q Consensus 175 ~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li 254 (342)
.-+..+++.| +..|++|.+|||............ ..++....++++.++.+|+|+++.+- ++-+.+-
T Consensus 17 Sp~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~ 83 (106)
T PF03720_consen 17 SPALELIEEL-KERGAEVSVYDPYVDEEEIKELGK-----------LEGVEVCDDLEEALKGADAVVLATDH-DEFRELD 83 (106)
T ss_dssp -HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHHCH-----------HHCEEEESSHHHHHTTESEEEESS---GGGGCCG
T ss_pred CHHHHHHHHH-HHCCCEEEEECCccChHHHHhhCC-----------ccceEEecCHHHHhcCCCEEEEEecC-HHHhccC
Confidence 3456788887 788999999999986542221000 01223356899999999999999873 4444433
Q ss_pred CHHHHhcCCCCcEEEEc
Q 019387 255 NKERLATMKKEAILVNC 271 (342)
Q Consensus 255 ~~~~l~~mk~ga~lINv 271 (342)
-......|+++.++|++
T Consensus 84 ~~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 84 WEEIAKLMRKPPVIIDG 100 (106)
T ss_dssp HHHHHHHSCSSEEEEES
T ss_pred HHHHHHhcCCCCEEEEC
Confidence 34555778889999997
No 257
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.40 E-value=0.02 Score=54.37 Aligned_cols=76 Identities=14% Similarity=0.332 Sum_probs=45.3
Q ss_pred CeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
++|+|||.|.+|..+|..++. +++ +|..+|...+.......+.... ..... .........+.+ .+++||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~-~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEA-APVEG-FDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhh-hhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence 589999999999999998752 234 9999999664321111111100 00001 111222234565 478999999986
Q ss_pred C
Q 019387 245 V 245 (342)
Q Consensus 245 p 245 (342)
.
T Consensus 79 ~ 79 (307)
T PRK06223 79 G 79 (307)
T ss_pred C
Confidence 3
No 258
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.39 E-value=0.0054 Score=60.11 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=53.3
Q ss_pred EEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCC--CccccccCCHHHHhhcCCEEEEcC
Q 019387 168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 168 vgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
|+|+|.|.+|+.+++.|++..+. +|++.|++.+.. ++..+.. ...... ........+|+++++++|+|+.|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~-~~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKA-ERLAEKL----LGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHH-HHHHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHH-HHHHhhc----cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 78999999999999998765566 899999988642 2211100 000000 111112335888999999999999
Q ss_pred CCCcccccccCHHHHhc-CCCCcEEEEc
Q 019387 245 VLDKTTYHLINKERLAT-MKKEAILVNC 271 (342)
Q Consensus 245 pl~~~t~~li~~~~l~~-mk~ga~lINv 271 (342)
|-. .+...++. ++.|.-.||+
T Consensus 76 gp~------~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 76 GPF------FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp SGG------GHHHHHHHHHHHT-EEEES
T ss_pred ccc------hhHHHHHHHHHhCCCeecc
Confidence 732 23332222 2456667773
No 259
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.39 E-value=0.011 Score=48.22 Aligned_cols=95 Identities=11% Similarity=0.099 Sum_probs=52.8
Q ss_pred eEEEEe-cCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcCCEEEE
Q 019387 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL 242 (342)
Q Consensus 167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~aDiV~l 242 (342)
++||+| .|.+|+.+++.|.+.=+.++.+. ++..+ ..+.....+. ..... ......+++ ..++|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~DvV~~ 71 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARS-AGKRVSEAGP------HLKGEVVLELEPEDFE--ELAVDIVFL 71 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhh-cCcCHHHHCc------ccccccccccccCChh--hcCCCEEEE
Confidence 589999 59999999998743236777765 43321 1111100110 00000 000112333 258999999
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
|+|... +...+. .....+++|.++|+++
T Consensus 72 ~~~~~~-~~~~~~-~~~~~~~~g~~viD~s 99 (122)
T smart00859 72 ALPHGV-SKEIAP-LLPKAAEAGVKVIDLS 99 (122)
T ss_pred cCCcHH-HHHHHH-HHHhhhcCCCEEEECC
Confidence 999643 333222 2345578999999997
No 260
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.36 E-value=0.36 Score=53.20 Aligned_cols=109 Identities=10% Similarity=0.091 Sum_probs=68.4
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhh-----------------hh-h-hccC-CCCc
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-----------------QF-L-KANG-EQPV 222 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~-----------------~~-~-~~~~-~~~~ 222 (342)
+.-.++.|+|.|++|+..++.+ .++|++ . .++ + ++....+.+. .+ . ...+ ....
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~--~-~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f 274 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEP--S-KLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQF 274 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCH--H-HHHHHHHhhcCCccccccceeeeeecChHHHhhccCCcccc
Confidence 4457899999999999999986 799888 2 232 2 2222111000 00 0 0000 0000
Q ss_pred --------cccccCC-HHHHhhcCCEEEEcCCCCcccccccCHH-HHhcCCCCc----EEEEcC--CCccc
Q 019387 223 --------TWKRASS-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS--RGPVI 277 (342)
Q Consensus 223 --------~~~~~~~-l~~ll~~aDiV~l~~pl~~~t~~li~~~-~l~~mk~ga----~lINva--RG~~v 277 (342)
.-.+... +++.+..+|+|+.|+--.+.+..+|..+ ..+.||+|. +++|++ -|+.|
T Consensus 275 ~~~~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs~D~gG~i 345 (1042)
T PLN02819 275 DKADYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCDIGGSI 345 (1042)
T ss_pred chhhhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEccCCCCCe
Confidence 0001122 3578899999999997777889999998 778999998 899876 44443
No 261
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.35 E-value=0.021 Score=54.78 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=70.6
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+..++|+|||.|.+|..+|..++ ..| ++++.+|..++.......+.... .. .......+....+.+ .+++||+|+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~-~~~~~~~I~~~~d~~-~l~~aDiVI 79 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-NV-IAGSNSKVIGTNNYE-DIAGSDVVI 79 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-hh-ccCCCeEEEECCCHH-HhCCCCEEE
Confidence 34579999999999999998864 445 48999999876421111111100 00 011112233335665 569999999
Q ss_pred EcCCCCc----------------ccccccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEEE
Q 019387 242 LHPVLDK----------------TTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG 295 (342)
Q Consensus 242 l~~pl~~----------------~t~~li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~--~g~i~~aa 295 (342)
++.-... ++..++.+ ..+....|.+.+||++--.-+-...+.+... ..++.|.+
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 9763211 11111211 2344445677999998433223334444331 23566666
No 262
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.32 E-value=0.019 Score=53.34 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=45.8
Q ss_pred CeEEEEec-CHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvgIvG~-G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.+|+|+|+ |+||+.+++.+.+.-++++.+ +|+.++... .. ...+.....++++++..+|+|+.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~-~~-------------~~~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV-GQ-------------GALGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-cc-------------CCCCccccCCHHHhccCCCEEEEC
Confidence 37999998 999999999864334788775 777654211 00 111223457899999889999977
Q ss_pred CC
Q 019387 244 PV 245 (342)
Q Consensus 244 ~p 245 (342)
+|
T Consensus 68 t~ 69 (257)
T PRK00048 68 TT 69 (257)
T ss_pred CC
Confidence 75
No 263
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.037 Score=53.88 Aligned_cols=127 Identities=18% Similarity=0.241 Sum_probs=93.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---hcCCEEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL 242 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---~~aDiV~l 242 (342)
..+|+||+|-||+.+|..+ ..-|.+|.+|+|..+. .+.+.+.. .. ........+++|++ +.=.-|++
T Consensus 4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~k-td~f~~~~-------~~-~k~i~~~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEK-TDEFLAER-------AK-GKNIVPAYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHH-HHHHHHhC-------cc-CCCccccCcHHHHHHHhcCCceEEE
Confidence 4699999999999999997 5789999999998754 44444321 11 11233446777765 44555665
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
.+-...-.... -++.+..|-+|=++|+-+-..--|+.--.++|.+..|.+.+.-|--.|-
T Consensus 74 MVkAG~~VD~~-I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEe 133 (473)
T COG0362 74 MVKAGTPVDAV-IEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEE 133 (473)
T ss_pred EEecCCcHHHH-HHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccc
Confidence 55432111222 2456778889999999999999999999999999999999999998887
No 264
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.30 E-value=0.041 Score=54.91 Aligned_cols=124 Identities=19% Similarity=0.169 Sum_probs=69.2
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCc---------hhHHHHHHh---hhhhhhhccCCCCccccc
Q 019387 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVT---AYGQFLKANGEQPVTWKR 226 (342)
Q Consensus 160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 226 (342)
+.+|.|+||.|-|+|++|+..|+.| ..+|++|+ +.|... ...+....+ .....+........+...
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~ 310 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY 310 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence 3578999999999999999999997 68999999 445440 111110000 000000000000001111
Q ss_pred cCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcC-CCCcEEE-EcCCCcccCHHHHHHHHHcCCce
Q 019387 227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEAILV-NCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 227 ~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~m-k~ga~lI-NvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
. +-++++ -.||+++-|. +.+.|+.+....+ +.++.+| --+-+++ ..+ -.+.|++..|.
T Consensus 311 ~-~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~ 371 (454)
T PTZ00079 311 V-PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVI 371 (454)
T ss_pred e-CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcE
Confidence 1 112222 4699998774 5788988887766 5555555 4556665 444 44666665543
No 265
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=96.27 E-value=0.58 Score=45.27 Aligned_cols=103 Identities=11% Similarity=0.209 Sum_probs=63.3
Q ss_pred ccCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 162 ~L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD 238 (342)
.+.|++|+++|= +++..+.+..++.-+|++|.+..|..-...+...+. .... ...+....++++.++++|
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~ea~~~aD 228 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENA---GHKITITDQLEGNLDKAD 228 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHc---CCeEEEEcCHHHHHccCC
Confidence 478999999998 588888887754345999998887542211121111 1111 122334579999999999
Q ss_pred EEEEcCCCCcc-----------cccccCHHHH-hcCCCCcEEEEc
Q 019387 239 VISLHPVLDKT-----------TYHLINKERL-ATMKKEAILVNC 271 (342)
Q Consensus 239 iV~l~~pl~~~-----------t~~li~~~~l-~~mk~ga~lINv 271 (342)
+|..-.-..++ ....++++.+ +.+|++++|.-+
T Consensus 229 vvyt~~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHc 273 (338)
T PRK08192 229 ILYLTRIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHP 273 (338)
T ss_pred EEEEcCcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECC
Confidence 99874211111 1134556666 347777777655
No 266
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.25 E-value=0.0073 Score=50.65 Aligned_cols=86 Identities=23% Similarity=0.314 Sum_probs=50.7
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019387 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (342)
Q Consensus 168 vgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~ 247 (342)
+-|+|-|.+|+++++. ++.+|++|+++|++++. ++.++-+. +.+.
T Consensus 1 L~I~GaG~va~al~~l-a~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~- 45 (136)
T PF13478_consen 1 LVIFGAGHVARALARL-AALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP- 45 (136)
T ss_dssp EEEES-STCHHHHHHH-HHHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred CEEEeCcHHHHHHHHH-HHhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence 4689999999999998 58999999999987531 11233322 2221
Q ss_pred cccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (342)
Q Consensus 248 ~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaL 296 (342)
++. . +.+ .+.++.++| ++++.-.|.+.|.++|++ ..+..|+
T Consensus 46 ~~~---~--~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 46 DDI---L--EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp HHH---H--HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred HHH---H--hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 000 0 111 455666666 889999999999999887 4555554
No 267
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.23 E-value=0.012 Score=53.48 Aligned_cols=104 Identities=22% Similarity=0.225 Sum_probs=63.3
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhccCCCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 221 (342)
..|.+++|.|+|+|.+|..+|+.|+ ..|+ ++..+|...-. +.+...+...+. .....
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~---np~~~ 92 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI---NPDVE 92 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh---CCCCE
Confidence 5688999999999999999999985 6787 67777654311 000000000000 00000
Q ss_pred c-ccc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 222 V-TWK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 222 ~-~~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
. ... ...++++++.++|+|+.|+. +.+++..+++...+. +.-+|..+
T Consensus 93 i~~~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 93 IEAYNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred EEEecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 0 000 11345678899999999986 677888888765543 44556553
No 268
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.16 E-value=0.025 Score=58.59 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=45.3
Q ss_pred CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcc-cccccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEc
Q 019387 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYD 196 (342)
Q Consensus 119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~-~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d 196 (342)
.....||.++-+=|.+.| |.-... ....|.+.+|.|||.|.+|..+|+.| .+.|+ +++.+|
T Consensus 307 dP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlVD 369 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFVD 369 (664)
T ss_pred CHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEEc
Confidence 456678888877776664 332111 12568899999999999999999998 48888 566777
Q ss_pred C
Q 019387 197 L 197 (342)
Q Consensus 197 ~ 197 (342)
.
T Consensus 370 ~ 370 (664)
T TIGR01381 370 N 370 (664)
T ss_pred C
Confidence 3
No 269
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.14 E-value=0.071 Score=50.56 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=70.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.|++++|||--.=-..++++| ...|++|..+.-.... ....+.....+.+++++++|+|++-
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~-----------------~~~~g~~~~~~~~~~~~~ad~ii~~ 62 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLD-----------------HGFTGATKSSSLEEALSDVDVIILP 62 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeccccc-----------------cccCCceeeccHHHHhccCCEEEEC
Confidence 378999999998888999998 6789998864321110 0011222345678889999999998
Q ss_pred CCCCccc---cc-------ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387 244 PVLDKTT---YH-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (342)
Q Consensus 244 ~pl~~~t---~~-------li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~ 293 (342)
+|.+.+. +. -++.+.+++||+|..++ ++.+. .. +-+.+++.++..
T Consensus 63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~ 117 (296)
T PRK08306 63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL 117 (296)
T ss_pred CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence 8865432 11 23678999999998444 34433 22 445566666654
No 270
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.13 E-value=0.021 Score=51.47 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=58.1
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch-----------------hHHHHHHhhhhhhhhccCCCCc
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA-----------------TRLEKFVTAYGQFLKANGEQPV 222 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 222 (342)
..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|...- .+.+.......... .....
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln---p~v~v 99 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN---PFVEI 99 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC---CCCEE
Confidence 5688999999999999999999985 5577 5888887621 11111111110000 00000
Q ss_pred cc-c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387 223 TW-K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (342)
Q Consensus 223 ~~-~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk 263 (342)
.. . ...+++++++++|+|+.|+. +.+++..++....+..+
T Consensus 100 ~~~~~~i~~~~~~~~~~~~DvVI~a~D-~~~~r~~l~~~~~~~~~ 143 (212)
T PRK08644 100 EAHNEKIDEDNIEELFKDCDIVVEAFD-NAETKAMLVETVLEHPG 143 (212)
T ss_pred EEEeeecCHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHHhCC
Confidence 00 0 11235578899999999864 56677777765544433
No 271
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.12 E-value=0.015 Score=52.42 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=65.6
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..|.||+|.|||-|.+|..=|+.| -..|++|+++.+.....+..+.+. .. ..+ .......+++ ..+++|
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~~-------~~-i~~-~~~~~~~~~~-~~~~lv 76 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIEE-------GK-IKW-IEREFDAEDL-DDAFLV 76 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHHh-------cC-cch-hhcccChhhh-cCceEE
Confidence 468999999999999999999998 478999999998875444443321 11 111 0112234444 449999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
+.+++. .-+|+..+..+++-.++||+.
T Consensus 77 iaAt~d-----~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 77 IAATDD-----EELNERIAKAARERRILVNVV 103 (210)
T ss_pred EEeCCC-----HHHHHHHHHHHHHhCCceecc
Confidence 999874 345566666676666888873
No 272
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.11 E-value=0.023 Score=46.26 Aligned_cols=101 Identities=13% Similarity=0.191 Sum_probs=65.2
Q ss_pred CeEEEEe----cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 166 ktvgIvG----~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
|+|+||| -|..|..+.+.| +..|.+|+..++..... .+...+.+++|.-...|+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlav 60 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAV 60 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEE
Confidence 6899999 789999999998 67999999998876321 12334678888447899999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~ 293 (342)
+++|. +.+..++.+ +..+..+.+++..+ ..++++.+.+++..+.-
T Consensus 61 v~~~~-~~~~~~v~~--~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 61 VCVPP-DKVPEIVDE--AAALGVKAVWLQPG----AESEELIEAAREAGIRV 105 (116)
T ss_dssp E-S-H-HHHHHHHHH--HHHHT-SEEEE-TT----S--HHHHHHHHHTT-EE
T ss_pred EEcCH-HHHHHHHHH--HHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEE
Confidence 99983 334444433 23345678888887 66677888888776653
No 273
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.09 E-value=0.0083 Score=50.51 Aligned_cols=122 Identities=17% Similarity=0.161 Sum_probs=68.8
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccC-CCCcccc-ccCCHHHHhhcCCEEEEcCC
Q 019387 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RASSMDEVLREADVISLHPV 245 (342)
Q Consensus 168 vgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~ll~~aDiV~l~~p 245 (342)
|.|+|.|.||..+|.+|+ ..|.+|..+++.. +.+.... .+..+.... ....... ......+.....|+|++|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~-~~g~~V~l~~r~~--~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA-QAGHDVTLVSRSP--RLEAIKE-QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHH-HTTCEEEEEESHH--HHHHHHH-HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHH-HCCCceEEEEccc--cHHhhhh-eeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 689999999999999984 5899999999876 2222111 111111111 0000011 11122345688999999986
Q ss_pred CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (342)
Q Consensus 246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaL 296 (342)
. .++...+.. .-...++++.++-.--| +-.++.|.+.+...++.++..
T Consensus 77 a-~~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 77 A-YQLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp G-GGHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred c-cchHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence 4 344554444 33445566666666554 344566666664445554443
No 274
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.011 Score=53.78 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=49.7
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh-hhccCCCCccccccCCHHHH-hhcCCEEEEc
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LKANGEQPVTWKRASSMDEV-LREADVISLH 243 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l-l~~aDiV~l~ 243 (342)
+++.|+|+|..|..+|+.| ...|.+|+..|..++...+.....++.. ... .......|+++ +.++|.++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~g------d~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTHVVIG------DATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceEEEEe------cCCCHHHHHhcCCCcCCEEEEe
Confidence 4789999999999999998 6899999999998765433111111000 000 00112345555 7889999998
Q ss_pred CCCCc
Q 019387 244 PVLDK 248 (342)
Q Consensus 244 ~pl~~ 248 (342)
...+.
T Consensus 74 t~~d~ 78 (225)
T COG0569 74 TGNDE 78 (225)
T ss_pred eCCCH
Confidence 87543
No 275
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.07 E-value=0.054 Score=54.09 Aligned_cols=118 Identities=23% Similarity=0.292 Sum_probs=72.2
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
+.+|++.|+|.|.+|.++|+.| ...|++|.++|+..........+. +...+. .+......++....+|+|+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~~---~~~~~~~~~~~~~~~d~vv~ 74 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELGI---ELVLGEYPEEFLEGVDLVVV 74 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcCC---EEEeCCcchhHhhcCCEEEE
Confidence 5789999999999999999998 588999999999763332221111 111111 11112223456678999988
Q ss_pred cCCCCcccccc----------cCH-HH-HhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 243 HPVLDKTTYHL----------INK-ER-LATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 243 ~~pl~~~t~~l----------i~~-~~-l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
+.-..+.+.-+ +.. +. ....+...+-|-=+.|..-..+-|.+.|+.
T Consensus 75 ~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 75 SPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 76543332211 111 11 222233355566678998888888888865
No 276
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.07 E-value=0.087 Score=49.40 Aligned_cols=158 Identities=22% Similarity=0.220 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC----Cc-------E
Q 019387 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N 191 (342)
Q Consensus 123 vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af----g~-------~ 191 (342)
+|=.+++-+++.+|- .|..|...+|.|+|.|.-|-.+|+.|. .. |. +
T Consensus 4 Ta~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~ 61 (279)
T cd05312 4 TAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKK 61 (279)
T ss_pred HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCe
Confidence 455667777777763 235688999999999999999999874 43 66 7
Q ss_pred EEEEcCCch---h--HHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEEcCCCCcccccccCHHHHhcCC-
Q 019387 192 LIYYDLYQA---T--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK- 263 (342)
Q Consensus 192 V~~~d~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l~~pl~~~t~~li~~~~l~~mk- 263 (342)
++.+|++.- . .+..+...|.. . ... ....+|.|+++ +.|+++=+-- .-++|+++.++.|.
T Consensus 62 i~~vD~~Gll~~~r~~l~~~~~~~a~---~-~~~----~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~ 129 (279)
T cd05312 62 IWLVDSKGLLTKDRKDLTPFKKPFAR---K-DEE----KEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAK 129 (279)
T ss_pred EEEEcCCCeEeCCCCcchHHHHHHHh---h-cCc----ccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHh
Confidence 888897731 1 12233333321 1 110 12368999999 8899986531 24899999999998
Q ss_pred --CCcEEEEcCCCcc---cCHHHHHHHHHcCC-ceEEEEe---c----CCCCC---CCcccccccccc
Q 019387 264 --KEAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLD---V----FEVTE---LGFSSFKHISTQ 315 (342)
Q Consensus 264 --~ga~lINvaRG~~---vd~~aL~~aL~~g~-i~~aaLD---V----~~~EP---~~~~~tPhia~~ 315 (342)
+..++.=.|.-.. +..++.+++ .+|+ |.+.+.- | -...| .|.++.|-|.-.
T Consensus 130 ~~~~PIIFaLSNPt~~~E~~pe~a~~~-t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG 196 (279)
T cd05312 130 SNERPIIFALSNPTSKAECTAEDAYKW-TDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLG 196 (279)
T ss_pred cCCCCEEEECCCcCCccccCHHHHHHh-hcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhH
Confidence 8889988887755 233444443 2355 6665531 1 12223 677777777433
No 277
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.06 E-value=0.53 Score=44.98 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=63.3
Q ss_pred cCCCeEEEEec---CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 163 L~gktvgIvG~---G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD 238 (342)
+.|.+|+++|= +++.++.+..+ ..||+ +|.+..|..-. +. ......+....++++.++++|
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~aD 219 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNSD 219 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCCC
Confidence 67999999998 59999999986 58999 99988775311 00 000112334578999999999
Q ss_pred EEEEcCCCCc-----c----c--ccccCHHHHhcCCCCcEEEEcC
Q 019387 239 VISLHPVLDK-----T----T--YHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 239 iV~l~~pl~~-----~----t--~~li~~~~l~~mk~ga~lINva 272 (342)
+|...--..+ . - ...++++.++.+|++++|.=+.
T Consensus 220 vvy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcL 264 (310)
T PRK13814 220 VIVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHPG 264 (310)
T ss_pred EEEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEEECCC
Confidence 9976322111 0 0 2445667777777777766653
No 278
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.06 E-value=0.053 Score=52.94 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=82.1
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHh--------hhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~ll~~a 237 (342)
.+|.|+|.|-+|-..+..|+ .+|-+|+++|..+++ .+.... ...+++.+..... ......+.++.++.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA-~~GHeVv~vDid~~K-V~~ln~g~~PI~EpgLe~ll~~~~~~g-Rl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLA-ELGHEVVCVDIDESK-VELLNKGISPIYEPGLEELLKENLASG-RLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECCchHHHHHHHHHH-HcCCeEEEEeCCHHH-HHHHhCCCCCCcCccHHHHHHhccccC-cEEEEcCHHHHHhcC
Confidence 37899999999999999984 899999999987653 222111 1111222211111 123346788889999
Q ss_pred CEEEEcCCCCcccccccCH--------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 238 DVISLHPVLDKTTYHLINK--------ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~--------~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
|++++|+|..+...|-+|- +..+.++..+++|+=|.-.+=..+.+.+-+.+
T Consensus 78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~ 136 (414)
T COG1004 78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIRE 136 (414)
T ss_pred CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHh
Confidence 9999999976665666653 45566776699999888777666666665544
No 279
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.01 E-value=0.041 Score=52.65 Aligned_cols=122 Identities=17% Similarity=0.244 Sum_probs=67.6
Q ss_pred CeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccC-C-CCccccccCCHHHHhhcCCEEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-E-QPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
.+|+|||.|++|..+|-.|+ ++..-++..||...+.......+ +.... . .........+.++ +++||+|++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D-----l~~~~~~~~~~~v~~~~dy~~-~~~adivvi 77 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD-----LQHGSAFLKNPKIEADKDYSV-TANSKVVIV 77 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH-----HHHhhccCCCCEEEECCCHHH-hCCCCEEEE
Confidence 48999999999999998764 24455899999876432111111 11100 0 0012222245665 799999998
Q ss_pred cCCCCc---ccc-ccc-------C--HHHHhcCCCCcEEEEcCCCcccCH--HHHHHH--HHcCCceEEE
Q 019387 243 HPVLDK---TTY-HLI-------N--KERLATMKKEAILVNCSRGPVIDE--VALVEH--LKQNPMFRVG 295 (342)
Q Consensus 243 ~~pl~~---~t~-~li-------~--~~~l~~mk~ga~lINvaRG~~vd~--~aL~~a--L~~g~i~~aa 295 (342)
+.-... +|+ .++ - .+.+..-.+.+++|+++ +.+|. ..+.+. +...++.|.+
T Consensus 78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEecC
Confidence 654311 233 111 1 13444556789999998 33333 223333 3345666653
No 280
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.01 E-value=0.16 Score=54.08 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=110.5
Q ss_pred hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (342)
Q Consensus 107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~ 186 (342)
+..|+|.|+-- ..+|=.+++-+++.+|- .|..+...+|.|.|.|.-|-.+|+.| .
T Consensus 151 ~~~ip~f~DD~---~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~ 205 (752)
T PRK07232 151 RMDIPVFHDDQ---HGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-V 205 (752)
T ss_pred hcCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-H
Confidence 34689988843 23455677777777762 24568899999999999999999998 5
Q ss_pred cCCc---EEEEEcCCch---hH---HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387 187 GFKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (342)
Q Consensus 187 afg~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~ 257 (342)
..|. +++.+|.+.- .+ ...+...|. .. ....+|+|+++.+|+++=+- +.+.|+++
T Consensus 206 ~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a----~~-------~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~ 269 (752)
T PRK07232 206 ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYA----VD-------TDARTLAEAIEGADVFLGLS-----AAGVLTPE 269 (752)
T ss_pred HcCCCcccEEEEcCCCeecCCCcccccHHHHHHh----cc-------CCCCCHHHHHcCCCEEEEcC-----CCCCCCHH
Confidence 6788 7888887641 11 112222221 11 12358999999999887542 25899999
Q ss_pred HHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCceEEEEecCCCCCCCcccccccc
Q 019387 258 RLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHIS 313 (342)
Q Consensus 258 ~l~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g~i~~aaLDV~~~EP~~~~~tPhia 313 (342)
.++.|.+..++.=.+....- ..++.+++ ..|.|.+-+---+.+.=.|++..|-+.
T Consensus 270 ~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGrs~~pnQ~NN~~~FPgi~ 325 (752)
T PRK07232 270 MVKSMADNPIIFALANPDPEITPEEAKAV-RPDAIIATGRSDYPNQVNNVLCFPYIF 325 (752)
T ss_pred HHHHhccCCEEEecCCCCccCCHHHHHHh-cCCEEEEECCcCCCCcccceeecchhh
Confidence 99999999999988877652 33333333 224566666333333337888888774
No 281
>PRK12862 malic enzyme; Reviewed
Probab=95.97 E-value=0.15 Score=54.40 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=110.6
Q ss_pred CCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhc
Q 019387 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (342)
Q Consensus 108 ~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~a 187 (342)
..|+|.|+-- ..+|=.+++-+++.+|- .|..+...+|.|.|.|.-|-.+|+.| ..
T Consensus 160 ~~ip~f~DD~---~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~ 214 (763)
T PRK12862 160 MKIPVFHDDQ---HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VS 214 (763)
T ss_pred CCCceEecCc---ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HH
Confidence 3589999844 23455677777777762 24578899999999999999999998 56
Q ss_pred CCc---EEEEEcCCch---hH---HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHH
Q 019387 188 FKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (342)
Q Consensus 188 fg~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~ 258 (342)
.|. +++.+|+..- .+ ...+...|. .. . ...+|+|+++.+|+++=+- +.+.|+++.
T Consensus 215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a---~~-~-------~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~ 278 (763)
T PRK12862 215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARYA---QK-T-------DARTLAEVIEGADVFLGLS-----AAGVLKPEM 278 (763)
T ss_pred cCCCcccEEEEcCCCeeeCCCCccccHHHHHHh---hh-c-------ccCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence 788 7888996531 11 112222221 11 1 1258999999999987542 258999999
Q ss_pred HhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCceEEEEecCCCCCCCcccccccc
Q 019387 259 LATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHIS 313 (342)
Q Consensus 259 l~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g~i~~aaLDV~~~EP~~~~~tPhia 313 (342)
++.|.+..++.=.+....- ..++.+++ ..|.|.+.+-.-|.+.=.|+++.|-|.
T Consensus 279 v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGrs~~p~Q~NN~~~FPgi~ 333 (763)
T PRK12862 279 VKKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATGRSDYPNQVNNVLCFPYIF 333 (763)
T ss_pred HHHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEECCcCCCCcccceeeccchh
Confidence 9999999999988876642 33333333 224566666443444447888888774
No 282
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.97 E-value=0.58 Score=44.74 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=49.3
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh-H-HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT-R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD 238 (342)
.+.|++|++||- +++.++++..+ ..||++|.+..|..-. . .+...+ .....+ .+....++++.++++|
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~----~~~~~g----~i~~~~d~~~av~~aD 220 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAKENIHAQTVE----RAKKKG----TLSWEMNLHKAVSHAD 220 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCccHHHHHHHHH----HHHhcC----CeEEEeCHHHHhCCCC
Confidence 478999999997 68999999886 5799999998875421 0 111000 011111 1223478999999999
Q ss_pred EEEEc
Q 019387 239 VISLH 243 (342)
Q Consensus 239 iV~l~ 243 (342)
+|..-
T Consensus 221 vvy~d 225 (311)
T PRK14804 221 YVYTD 225 (311)
T ss_pred EEEee
Confidence 99873
No 283
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.94 E-value=0.026 Score=61.79 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=48.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcE-------------EEEEcCCchhHHHHHHhhhhhhhhccCCCCcc--ccccC
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRAS 228 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 228 (342)
..|+|+|||.|.||+..|+.|++.-+.+ |.+.|++++.. ++..+.+. +..... +....
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~~------~~~~v~lDv~D~e 640 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGIE------NAEAVQLDVSDSE 640 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhcC------CCceEEeecCCHH
Confidence 4679999999999999999986544444 88899887542 22211110 111111 11223
Q ss_pred CHHHHhhcCCEEEEcCCC
Q 019387 229 SMDEVLREADVISLHPVL 246 (342)
Q Consensus 229 ~l~~ll~~aDiV~l~~pl 246 (342)
++.++++++|+|++|+|.
T Consensus 641 ~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 641 SLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHhhcCCCEEEECCCc
Confidence 455555789999999995
No 284
>PRK12861 malic enzyme; Reviewed
Probab=95.92 E-value=0.13 Score=54.65 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=107.3
Q ss_pred CeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC
Q 019387 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (342)
Q Consensus 109 gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af 188 (342)
.|++.|+-- ..+|=.+++-+++.+|- .|..+...+|.|.|.|.-|-.+|+.| ...
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~ 211 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL 211 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence 689998843 23455677777877762 24578899999999999999999998 567
Q ss_pred Cc---EEEEEcCCch---hH---HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHH
Q 019387 189 KM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (342)
Q Consensus 189 g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l 259 (342)
|. +++.+|++.- .+ ...+...|. + .. ...+|.|+++.+|+++=+- ..+.|+++.+
T Consensus 212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a---~-~~-------~~~~L~eai~~advliG~S-----~~g~ft~e~v 275 (764)
T PRK12861 212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERFA---Q-ET-------DARTLAEVIGGADVFLGLS-----AGGVLKAEML 275 (764)
T ss_pred CCChhhEEEEcCCCeeeCCCcccCCHHHHHHH---h-hc-------CCCCHHHHHhcCCEEEEcC-----CCCCCCHHHH
Confidence 88 7888995541 11 111122221 1 11 1258999999999886542 2589999999
Q ss_pred hcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC-ceEEEEecCCCCCCCcccccccc
Q 019387 260 ATMKKEAILVNCSRGPVI-DEVALVEHLKQNP-MFRVGLDVFEVTELGFSSFKHIS 313 (342)
Q Consensus 260 ~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g~-i~~aaLDV~~~EP~~~~~tPhia 313 (342)
+.|.+..++.=.|....- ..+..++ ..|+ |.+-+---+.+.=.|++..|-|.
T Consensus 276 ~~Ma~~PIIFaLsNPtpE~~pe~a~~--~~g~aivaTGrs~~pnQ~NN~l~FPgi~ 329 (764)
T PRK12861 276 KAMAARPLILALANPTPEIFPELAHA--TRDDVVIATGRSDYPNQVNNVLCFPYIF 329 (764)
T ss_pred HHhccCCEEEECCCCCccCCHHHHHh--cCCCEEEEeCCcCCCCccceeeecchhh
Confidence 999999999988876641 2232233 3344 54444333333337888887763
No 285
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.91 E-value=0.087 Score=49.80 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=68.0
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--hHHHHHHhhhhhhhhccCCCCcccccc---CCHHHHhh
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLR 235 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ll~ 235 (342)
.+.||++.|+|.|..+++++-.|+ ..|+ +|.+++|..+ .+.+.+.+.+. ........+... ..+.+.+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~-~~g~~~i~i~nRt~~~~~ka~~la~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 195 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVN----ENTDCVVTVTDLADQQAFAEALA 195 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCccHHHHHHHHHHHhh----hccCceEEEechhhhhhhhhhcc
Confidence 467899999999999999998764 5676 7999999853 23333322221 000000111111 12344567
Q ss_pred cCCEEEEcCCCCcc--ccc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 236 EADVISLHPVLDKT--TYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 236 ~aDiV~l~~pl~~~--t~~-li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
++|+|+.+.|..-. ... ++.. .+.++++.++.++.-.+. .+.=|.+|-+.|
T Consensus 196 ~aDivINaTp~Gm~~~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G 249 (288)
T PRK12749 196 SADILTNGTKVGMKPLENESLVND--ISLLHPGLLVTECVYNPH-MTKLLQQAQQAG 249 (288)
T ss_pred cCCEEEECCCCCCCCCCCCCCCCc--HHHCCCCCEEEEecCCCc-cCHHHHHHHHCC
Confidence 89999999986421 111 1111 234667888888876553 333333333333
No 286
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.91 E-value=0.018 Score=55.67 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=60.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--------------------hHHHHHHhhhhhhhhccCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------------TRLEKFVTAYGQFLKANGE 219 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~--------------------~~~~~~~~~~~~~~~~~~~ 219 (342)
..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|...- .+.+...+...+. ...
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i---np~ 95 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI---NSD 95 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH---CCC
Confidence 5689999999999999999999985 6688 8888887520 0111100000000 000
Q ss_pred CCccc-c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 220 QPVTW-K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 220 ~~~~~-~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
..... . ...++.++++++|+|+.|.. +.+++.++++...+.
T Consensus 96 v~v~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~ 140 (339)
T PRK07688 96 VRVEAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQKY 140 (339)
T ss_pred cEEEEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHHh
Confidence 00000 0 12346688999999999975 677888887765543
No 287
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.90 E-value=0.13 Score=47.63 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCc-----------E
Q 019387 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------N 191 (342)
Q Consensus 123 vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~-----------~ 191 (342)
+|=.+++-+++.+|- .|..|...++.|+|.|.-|-.+|+.|. ..++ +
T Consensus 4 TaaV~lAgllnAlk~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~ 61 (254)
T cd00762 4 TASVAVAGLLAALKV---------------------TKKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKR 61 (254)
T ss_pred hHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhcc
Confidence 455567777777762 235688999999999999999999874 4444 6
Q ss_pred EEEEcCCch---hH--HHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEEcCCCCcccccccCHHHHhcCC-
Q 019387 192 LIYYDLYQA---TR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK- 263 (342)
Q Consensus 192 V~~~d~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l~~pl~~~t~~li~~~~l~~mk- 263 (342)
++.+|++.- .+ ...+...+..+... .....+|.|+++ +.|+++=.- ...++|.++.++.|.
T Consensus 62 i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-------~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~ 130 (254)
T cd00762 62 IWXVDRKGLLVKNRKETCPNEYHLARFANP-------ERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAE 130 (254)
T ss_pred EEEECCCCeEeCCCCccCHHHHHHHHHcCc-------ccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhh
Confidence 888887631 11 11111111011111 112369999999 999997542 225899999999998
Q ss_pred --CCcEEEEcCCCcc---cCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccc
Q 019387 264 --KEAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHIST 314 (342)
Q Consensus 264 --~ga~lINvaRG~~---vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~ 314 (342)
+..++.=.|.-.. +..++.+++=+-..|.+.+.-.+.++- .|+++.|-+.-
T Consensus 131 ~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGigl 196 (254)
T cd00762 131 INERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVAL 196 (254)
T ss_pred cCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhh
Confidence 8889888877665 344445554322245555554333321 67777777643
No 288
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.87 E-value=0.063 Score=51.38 Aligned_cols=132 Identities=9% Similarity=-0.020 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCchh------HHHHHHh----hhhhhhhccCCCC--------ccccccC--CHHHHhh
Q 019387 176 IGSAYARMMVEGFKMNLIYYDLYQAT------RLEKFVT----AYGQFLKANGEQP--------VTWKRAS--SMDEVLR 235 (342)
Q Consensus 176 IG~~vA~~l~~afg~~V~~~d~~~~~------~~~~~~~----~~~~~~~~~~~~~--------~~~~~~~--~l~~ll~ 235 (342)
||..+|..++ ..|.+|..||++++. ..+.... .+..... .+... ....... +..+.++
T Consensus 1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~a~~ 78 (314)
T PRK08269 1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVA-LGRIDAAQADAVLARIAVVARDGAADALA 78 (314)
T ss_pred CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHH-cCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence 6888998875 569999999998842 1111111 1111111 11100 0111122 2567889
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCccccccc
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKHI 312 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPhi 312 (342)
+||+|+-++|-+.+.+.-+-.+..+.++++++|...+ +.+....|.+.+.. .=+..++-.|.+-+ |-+-+.|+-
T Consensus 79 ~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSnt--S~~~~~~la~~~~~-p~r~~g~Hf~~Pp~~~~lvEVv~g~ 154 (314)
T PRK08269 79 DADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTT--STFLVTDLQRHVAH-PERFLNAHWLNPAYLMPLVEVSPSD 154 (314)
T ss_pred cCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcc--ccCCHHHHHhhcCC-cccEEEEecCCccccCceEEEeCCC
Confidence 9999999999999988888888888899999995544 34666777777642 23345554443322 444455554
No 289
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.82 E-value=0.062 Score=52.01 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=66.1
Q ss_pred eEEEEecCHHHHHHHHHHHh---------cCCcEEEE-EcCCch-----h-HHHHHHhhhhhhhhccCCCCc--cccccC
Q 019387 167 TVGVIGAGRIGSAYARMMVE---------GFKMNLIY-YDLYQA-----T-RLEKFVTAYGQFLKANGEQPV--TWKRAS 228 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~---------afg~~V~~-~d~~~~-----~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 228 (342)
+|||+|+|+||+.+++.|.+ +++.+|.+ .|+... . ..+... .+....+.... ......
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~----~~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELAL----KVKEETGKLADYPEGGGEI 79 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHH----HHHhccCCcccCccccccC
Confidence 79999999999999998732 23677664 564311 0 011100 00111110000 001124
Q ss_pred CHHHHhh--cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 019387 229 SMDEVLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM 291 (342)
Q Consensus 229 ~l~~ll~--~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~aL~~g~i 291 (342)
++++++. ..|+|+.|+|.+.++...--.-....++.|.-+|-..-+.+ ..-++|.++.++...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 7888884 68999999996554333222333566677777766544443 234567776665444
No 290
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.80 E-value=0.037 Score=55.18 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=48.6
Q ss_pred eEEEEecCHHHHHHHH--HHHh--cC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 167 TVGVIGAGRIGSAYAR--MMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~--~l~~--af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+|+|||.|.+|...+- -++. ++ |.+|..||+.++.. +........... ....+..+....++++.++.||+|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l-~~~~~~~~~~~~-~~~~~~~I~~ttD~~eal~~AD~Vi 79 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERL-ETVEILAKKIVE-ELGAPLKIEATTDRREALDGADFVI 79 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHH-HHHHHHHHHHHH-hcCCCeEEEEeCCHHHHhcCCCEEE
Confidence 7999999999998654 1221 33 56999999987532 221111111111 1112233444578899999999999
Q ss_pred EcCCC
Q 019387 242 LHPVL 246 (342)
Q Consensus 242 l~~pl 246 (342)
.++|.
T Consensus 80 ~ai~~ 84 (423)
T cd05297 80 NTIQV 84 (423)
T ss_pred EeeEe
Confidence 99983
No 291
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.80 E-value=0.072 Score=52.24 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=58.8
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc------------------hhHHHHHHhhhhhhhhccCCCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ------------------ATRLEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 221 (342)
..|.+++|.|+|.|.+|..+|+.|+ ..|+ ++..+|... ..+.+...+...+.. ....
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~ 206 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN---PDVQ 206 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC---CCCE
Confidence 4688999999999999999999984 6787 688888752 111111111111100 1000
Q ss_pred c-ccc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387 222 V-TWK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 222 ~-~~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~ 260 (342)
. ... ...+++++++++|+|+.|+. +.+++.++++...+
T Consensus 207 v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~ 248 (376)
T PRK08762 207 VEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK 248 (376)
T ss_pred EEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 0 010 11245678899999998875 56677777776544
No 292
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.76 E-value=0.035 Score=56.36 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=69.8
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
+.|++|.|+|+|.+|.+.++.| +..|++|.++|..+.. .+.. . ..+. .........+.+.++|+|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~l-~-------~~g~---~~~~~~~~~~~l~~~D~VV~ 76 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRPH-A-------ERGV---ATVSTSDAVQQIADYALVVT 76 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHH-H-------hCCC---EEEcCcchHhHhhcCCEEEE
Confidence 4689999999999999999986 7999999999976432 2211 1 1111 11111123445678999988
Q ss_pred cCCCCcccc----------cccCHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 243 HPVLDKTTY----------HLINKERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 243 ~~pl~~~t~----------~li~~~~l~-~m--------k~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
...-.+.+. .++++-.|. .. +...+-|-=+-|..-...-+.+.|+.
T Consensus 77 SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 77 SPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred CCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 754433221 233433332 11 11345566678888888877777765
No 293
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.74 E-value=0.028 Score=52.98 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=73.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-cCCCCccccccC----------C
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRAS----------S 229 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~ 229 (342)
-...+.++-++|+|-+|-..+.. ++-.|+-|..+|.++....+.....- .+... +.+..-++.... -
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keqv~s~Ga-~f~~~~~ee~~gGYAk~ms~~~~~~q~~~ 237 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQVESLGA-KFLAVEDEESAGGYAKEMSEEFIAKQAEL 237 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhhhhhccc-ccccccccccCCCccccCCHHHHHHHHHH
Confidence 45677889999999999998877 57789999999987754322110000 01111 111111222222 2
Q ss_pred HHHHhhcCCEEEEc--CCCCcccccccCHHHHhcCCCCcEEEEcC--CCc
Q 019387 230 MDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGP 275 (342)
Q Consensus 230 l~~ll~~aDiV~l~--~pl~~~t~~li~~~~l~~mk~ga~lINva--RG~ 275 (342)
+.+..++.|+|+.. +|.- ....|+.++....||||+++||.+ +|+
T Consensus 238 ~a~~~~~~DivITTAlIPGr-pAP~Lvt~~mv~sMkpGSViVDlAa~~GG 286 (356)
T COG3288 238 VAEQAKEVDIVITTALIPGR-PAPKLVTAEMVASMKPGSVIVDLAAETGG 286 (356)
T ss_pred HHHHhcCCCEEEEecccCCC-CCchhhHHHHHHhcCCCcEEEEehhhcCC
Confidence 44667889999665 5543 456899999999999999999974 553
No 294
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.69 E-value=0.059 Score=53.40 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=61.4
Q ss_pred ccCCCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHH
Q 019387 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (342)
Q Consensus 162 ~L~gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (342)
.+.|++|+|+|+ ..-...+++.| ...|++|.+|||........ . .....+++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~--------------~~~~~~~~ 371 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---G--------------LPLIDDLE 371 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---h--------------cccCCCHH
Confidence 478999999998 45778899997 68899999999986432110 0 01136888
Q ss_pred HHhhcCCEEEEcCCCCcccccccCHHHHh-cCCCCcEEEEc
Q 019387 232 EVLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNC 271 (342)
Q Consensus 232 ~ll~~aDiV~l~~pl~~~t~~li~~~~l~-~mk~ga~lINv 271 (342)
+.+++||.|+++.+- ++-+. ++-+.+. .|+ ..+++|.
T Consensus 372 ~~~~~ad~~v~~t~~-~~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 372 EALKGADALVILTDH-DEFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHHhCCCEEEEecCC-HHHhc-cCHHHHHHhcC-CCEEEeC
Confidence 999999999999863 23222 3444444 455 4577774
No 295
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.65 E-value=0.045 Score=53.70 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=71.9
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh----------HHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (342)
..|.|+||.|-|+|++|+.+|+.| ...|++|++.|.+... .+....+...+.. .. .+......
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~---~~--~ga~~i~~- 275 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVA---EY--AGAEYITN- 275 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHH---hh--cCceEccc-
Confidence 358999999999999999999997 5779999998766540 0000000000000 00 01111122
Q ss_pred HHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 231 ~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
++++ ..||+++=| .+.+.|+.+...+++.. +++-.+-|++-. +|--..++.|
T Consensus 276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~-eA~~i~~erG 328 (411)
T COG0334 276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTP-EADEILLERG 328 (411)
T ss_pred cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCH-HHHHHHHHCC
Confidence 4444 368988755 45789999999999876 888888888653 3333333444
No 296
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.65 E-value=0.12 Score=48.72 Aligned_cols=120 Identities=19% Similarity=0.197 Sum_probs=68.9
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.||++.|+|.|..|++++-.|+ ..|+ ++.+++|..++. +...+.+. ...+..........++++.+..+|+|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~-~~g~~~i~i~nR~~~ka-~~La~~~~---~~~~~~~~~~~~~~~~~~~~~~~div 198 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALV-THGVQKLQVADLDTSRA-QALADVIN---NAVGREAVVGVDARGIEDVIAAADGV 198 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHh---hccCcceEEecCHhHHHHHHhhcCEE
Confidence 355899999999999999999874 6787 788999986532 22222111 00010000000111234566789999
Q ss_pred EEcCCCCcccc--cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387 241 SLHPVLDKTTY--HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 241 ~l~~pl~~~t~--~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~ 290 (342)
+.+.|..-... -.++. +.++++.+++++--.+ ..+.=|.+|-+.|.
T Consensus 199 INaTp~Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G~ 246 (283)
T PRK14027 199 VNATPMGMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALGC 246 (283)
T ss_pred EEcCCCCCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCCC
Confidence 99999643211 11322 3456677777776655 33444444444443
No 297
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.65 E-value=0.075 Score=51.00 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=61.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh---cCCE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADV 239 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~---~aDi 239 (342)
.|++|.|.|.|.+|...++. ++..|+ +|++.+++++.. +.. ..+ +....-.....+++++.. ..|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiql-ak~~G~~~Vi~~~~~~~~~-~~a-~~l-------Ga~~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAA-VKTLGAAEIVCADVSPRSL-SLA-REM-------GADKLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEEeCCHHHH-HHH-HHc-------CCcEEecCCcccHHHHhccCCCCCE
Confidence 58999999999999999998 589999 588888776543 211 111 111100001123444332 2799
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
++-|... +. .-...++.+++|..+|.++..
T Consensus 239 vid~~G~-~~----~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 239 SFEVSGH-PS----SINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred EEECCCC-HH----HHHHHHHHhhcCCEEEEEccC
Confidence 9988753 11 124567889999999998753
No 298
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.64 E-value=0.027 Score=55.89 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
.++|.|+|+|.+|.++|+.| +..|.+|.++|+++...... .. . ... .....+.+..++|+|+.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~--~~----~------~~~--~~~~~~~~~~~~dlvV~s~ 67 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC--PY----I------HER--YLENAEEFPEQVDLVVRSP 67 (418)
T ss_pred CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh--HH----H------hhh--hcCCcHHHhcCCCEEEECC
Confidence 46899999999999999997 78999999999876431100 00 0 000 0112334457799998887
Q ss_pred CCCcccc----------cccCHHHH--hc--C-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 245 VLDKTTY----------HLINKERL--AT--M-KKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 245 pl~~~t~----------~li~~~~l--~~--m-k~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
+..+... .+++...+ .. + +...+=|-=+-|..-..+=|.+.|+.
T Consensus 68 gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 68 GIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 6543211 12222111 11 1 11234455566766666666666654
No 299
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.61 E-value=0.035 Score=52.65 Aligned_cols=123 Identities=12% Similarity=0.238 Sum_probs=63.7
Q ss_pred EEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387 168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 168 vgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl 246 (342)
|+|||.|.||..+|..++. +++ +|+.+|..++.. ............... .........+.++ +++||+|+++...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~-~g~~~dl~~~~~~~~-~~~~I~~t~d~~~-l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLP-QGKALDISQAAPILG-SDTKVTGTNDYED-IAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHH-HHHHHHHHHhhhhcC-CCeEEEEcCCHHH-hCCCCEEEEecCC
Confidence 6899999999999988742 334 999999986532 111110000000001 1112222345554 7999999988742
Q ss_pred Cccccc------------ccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH--HcCCceEEE
Q 019387 247 DKTTYH------------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRVG 295 (342)
Q Consensus 247 ~~~t~~------------li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL--~~g~i~~aa 295 (342)
+...+ ++- ...+....+.+++|+++--.-+-...+.+.. ...++.|.+
T Consensus 77 -p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 77 -PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred -CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 22111 111 1233444567788888733222233333332 122566666
No 300
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.60 E-value=0.039 Score=50.14 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=59.1
Q ss_pred cccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHhhcC
Q 019387 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREA 237 (342)
Q Consensus 159 ~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~a 237 (342)
....+.|++|.|||-|.+|..=++.| ..+|++|+++.+...+....+.. .+. ..+. .... ++-+..+
T Consensus 19 i~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~--i~~~~r~~~-~~dl~g~ 86 (223)
T PRK05562 19 ISLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGN--LKLIKGNYD-KEFIKDK 86 (223)
T ss_pred eEEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCC-hHHhCCC
Confidence 34567899999999999999878777 47999999999887655443221 011 1111 1112 2345788
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINv 271 (342)
++|+.++... -+|+......+.-.+++|+
T Consensus 87 ~LViaATdD~-----~vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 87 HLIVIATDDE-----KLNNKIRKHCDRLYKLYID 115 (223)
T ss_pred cEEEECCCCH-----HHHHHHHHHHHHcCCeEEE
Confidence 9888887632 2334444444433345553
No 301
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.58 E-value=0.04 Score=55.47 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=61.3
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..|.|++|.|||-|.+|..=++.| ..+|++|.++.+.....+..+.. .+. ..+....--++.+..+++|
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~~--------~~~--i~~~~~~~~~~dl~~~~lv 76 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWAD--------AGM--LTLVEGPFDESLLDTCWLA 76 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCChHHhCCCEEE
Confidence 578999999999999999877777 47899999998876554433211 111 1111111123456889988
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
+.++...+ +|+.....++...+++|++
T Consensus 77 ~~at~d~~-----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 77 IAATDDDA-----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred EECCCCHH-----HhHHHHHHHHHcCcEEEEC
Confidence 88876432 4455455555555666653
No 302
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=95.58 E-value=1.2 Score=42.14 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=68.6
Q ss_pred cCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+.|+++..+|=| +++.++.... ..|||+|...-|..-...+.+.+......... ...+....+.++.++++|+|.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~---g~~i~~t~d~~eAv~gADvvy 226 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVEKAKENAKES---GGKITLTEDPEEAVKGADVVY 226 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhc---CCeEEEecCHHHHhCCCCEEE
Confidence 899999999977 6888887763 57999999877765333233222211111111 112334568999999999997
Q ss_pred EcCC--CCcccc-----------cccCHHHHhcCCCCcEEEEc
Q 019387 242 LHPV--LDKTTY-----------HLINKERLATMKKEAILVNC 271 (342)
Q Consensus 242 l~~p--l~~~t~-----------~li~~~~l~~mk~ga~lINv 271 (342)
.=+. ..++.. .-+|.+.++.-+++++|.-|
T Consensus 227 TDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 227 TDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred ecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 6543 223332 55678888888888888876
No 303
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.57 E-value=0.042 Score=48.93 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=32.0
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~ 198 (342)
..|.+++|.|+|+|.+|.++++.|+ ..|+ ++..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence 5689999999999999999999985 6788 57788865
No 304
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.57 E-value=0.032 Score=51.47 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=62.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH------------HHhhhhhhhhccCCCCccc-
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGEQPVTW- 224 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~- 224 (342)
..|.+++|+|+|.|.+|..+|+.|+ ..|. ++..+|...-.. +.. ..+.....+..-. +...+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-p~v~i~ 105 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-PHIAIE 105 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC-CCCEEE
Confidence 5789999999999999999999985 5676 677777543210 000 0000000011000 00101
Q ss_pred --c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387 225 --K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 225 --~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINv 271 (342)
. ...+++++++++|+|+.|+. +.+++..+++...+.-+ -+|..
T Consensus 106 ~~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~i---p~v~~ 153 (245)
T PRK05690 106 TINARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKK---PLVSG 153 (245)
T ss_pred EEeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCC---EEEEe
Confidence 0 11235678899999999985 67788888877655433 35553
No 305
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.55 E-value=0.045 Score=52.37 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=58.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
.+++|+|||.|++|..+|..| ...|. ++..+|.+.+.......+-. ... ... ...... ..+.+ .+++||+|+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~Dl~-~~~-~~~-~~~~i~-~~~~~-~~~~adivI 78 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMDLS-HAV-PFT-SPTKIY-AGDYS-DCKDADLVV 78 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHHHH-hhc-ccc-CCeEEE-eCCHH-HhCCCCEEE
Confidence 467999999999999999986 45566 89999987643211111110 000 000 011111 23444 479999998
Q ss_pred EcCCC--Cc-ccc--------cccC--HHHHhcCCCCcEEEEcC
Q 019387 242 LHPVL--DK-TTY--------HLIN--KERLATMKKEAILVNCS 272 (342)
Q Consensus 242 l~~pl--~~-~t~--------~li~--~~~l~~mk~ga~lINva 272 (342)
++.-. .| +++ .++. ...+..-.+.+.+|+++
T Consensus 79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 87543 11 122 1121 12333334688999997
No 306
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=95.54 E-value=0.019 Score=53.36 Aligned_cols=92 Identities=17% Similarity=0.119 Sum_probs=50.2
Q ss_pred HHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHH
Q 019387 181 ARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (342)
Q Consensus 181 A~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l 259 (342)
|+.|. +++..+|++||+++.....+.. .+.... ...+ .+.++++|+|++|+|. ..+..++ ++.-
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~---------~g~~~~---~~~~-~~~~~~~DlvvlavP~-~~~~~~l-~~~~ 66 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALE---------LGIIDE---ASTD-IEAVEDADLVVLAVPV-SAIEDVL-EEIA 66 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHH---------TTSSSE---EESH-HHHGGCCSEEEE-S-H-HHHHHHH-HHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHH---------CCCeee---ccCC-HhHhcCCCEEEEcCCH-HHHHHHH-HHhh
Confidence 45542 2445899999999875433211 122111 1223 5678999999999995 2334444 3445
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 260 ATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 260 ~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
..+++|+++++++--..--.+++.+.+.
T Consensus 67 ~~~~~~~iv~Dv~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 67 PYLKPGAIVTDVGSVKAPIVEAMERLLP 94 (258)
T ss_dssp CGS-TTSEEEE--S-CHHHHHHHHHHHT
T ss_pred hhcCCCcEEEEeCCCCHHHHHHHHHhcC
Confidence 5689999999998765433444444444
No 307
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.52 E-value=0.043 Score=46.16 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=45.9
Q ss_pred eEEEEec-CHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 167 TVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvgIvG~-G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
+|+|||. |++|+.+|-.|. +.++-++..+|...... +............ . ...........+.+++||+|+++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~-~g~a~Dl~~~~~~-~--~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKA-EGEALDLSHASAP-L--PSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHH-HHHHHHHHHHHHG-S--TEEEEEEESSGGGGTTESEEEETT
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccc-eeeehhhhhhhhh-c--ccccccccccccccccccEEEEec
Confidence 7999999 999999998764 35667999999986432 2211111000000 0 011111225566778999999987
Q ss_pred C
Q 019387 245 V 245 (342)
Q Consensus 245 p 245 (342)
-
T Consensus 78 g 78 (141)
T PF00056_consen 78 G 78 (141)
T ss_dssp S
T ss_pred c
Confidence 3
No 308
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.52 E-value=0.012 Score=53.22 Aligned_cols=134 Identities=21% Similarity=0.278 Sum_probs=82.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh----hhcc-CCCCcc-----------cccc
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF----LKAN-GEQPVT-----------WKRA 227 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~----~~~~-~~~~~~-----------~~~~ 227 (342)
.-+.|+|+|-|-||..+|+.. ..-|.+|+.+|.+.+...++ .++..+. ...+ ...+.. ....
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~~A-~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALSRA-TKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHHHH-HHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 456899999999999999985 57899999999987543222 2221111 1111 111111 1123
Q ss_pred CCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 228 ~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lI-NvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
.++.++.+.+|+|+-.+--+-+.+.-+-++.=...|+.++|. |++. +...++..+++. +-+.++|-.|.+-|
T Consensus 88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~-~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQR-PSRFAGLHFFNPVP 160 (298)
T ss_pred CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccC-hhhhceeeccCCch
Confidence 456677777888776554443333333333334556776665 3443 455677888775 56679999998888
No 309
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.51 E-value=0.021 Score=50.90 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=23.8
Q ss_pred eEEEEec-CHHHHHHHHHHHhcCCcEEEE
Q 019387 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIY 194 (342)
Q Consensus 167 tvgIvG~-G~IG~~vA~~l~~afg~~V~~ 194 (342)
+++|||- |.||+.+++.| +..|..|..
T Consensus 2 ~~~iiG~~G~mG~~~~~~~-~~~g~~v~~ 29 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSIL-DDNGLGVYI 29 (197)
T ss_pred EEEEEecCCcHHHHHHHHH-HhCCCEEEE
Confidence 7899998 99999999998 788988853
No 310
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.51 E-value=0.15 Score=51.59 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=70.6
Q ss_pred ccCCCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhh----hhhccC------CCC
Q 019387 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP 221 (342)
Q Consensus 162 ~L~gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~ 221 (342)
.+.|++|+|+|+ ..-...+++.| ...|.+|.+|||....... ...++. |..... ..+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQI--QRDLSMNKFDWDHPRHLQPMSPTAV 397 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHH--HHHhhcccccccccccccccccccc
Confidence 588999999998 55778899987 6789999999998543111 001100 000000 000
Q ss_pred ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH-HHhcCCCCcEEEEcCCCcccCHHHHH
Q 019387 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV 283 (342)
Q Consensus 222 ~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~-~l~~mk~ga~lINvaRG~~vd~~aL~ 283 (342)
.......++++.+++||+|+++.+- ++-+. ++-+ ....|++..+++|. |+ ++|.+.+.
T Consensus 398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 398 KQVSVVWDAYEATKGAHGICILTEW-DEFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred cceeeeCCHHHHhcCCCEEEECCCC-hHhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 0122345667899999999999874 33333 3433 35567766688885 54 45766554
No 311
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=95.50 E-value=1.1 Score=43.19 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=47.7
Q ss_pred c-CCCeEEEEecC-------HHHHHHHHHHHhcCCcEEEEEcC-CchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH
Q 019387 163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (342)
Q Consensus 163 L-~gktvgIvG~G-------~IG~~vA~~l~~afg~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 233 (342)
+ .|++|+|+|.| ++.++++..+ ..||++|.+..| ..-...+...+.........+ ..+....++++.
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea 241 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAESG---GSLTVSHDIDSA 241 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 5 68999887654 7888888876 579999999988 321111111110000111111 123345799999
Q ss_pred hhcCCEEEEcC
Q 019387 234 LREADVISLHP 244 (342)
Q Consensus 234 l~~aDiV~l~~ 244 (342)
++++|+|..-.
T Consensus 242 ~~~aDvvy~~~ 252 (335)
T PRK04523 242 YAGADVVYAKS 252 (335)
T ss_pred hCCCCEEEece
Confidence 99999997644
No 312
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.50 E-value=0.059 Score=50.32 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=44.5
Q ss_pred eEEEEe-cCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
+|+|+| +|+||+.+++.+...-++++.+ +|+..+........ .. .+..+.++....+++++...+|+|+.+.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~---~~---~~~~~~gv~~~~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG---EL---AGIGKVGVPVTDDLEAVETDPDVLIDFT 76 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH---Hh---cCcCcCCceeeCCHHHhcCCCCEEEECC
Confidence 799999 7999999999875446888775 67432211000000 00 0111112334578888866789999987
Q ss_pred C
Q 019387 245 V 245 (342)
Q Consensus 245 p 245 (342)
|
T Consensus 77 ~ 77 (266)
T TIGR00036 77 T 77 (266)
T ss_pred C
Confidence 5
No 313
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.47 E-value=0.068 Score=50.83 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=70.3
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
.+|+|+|.|.||.-+|-.|+ ..|.+|..+++..+ +.+.....-+..+...+.. ..+.....-.+.....|+|++|+-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~-~~G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA-RAGLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH-hCCCCeEEEEechH-HHHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence 47999999999999999984 56999999998652 2332221100011111111 111100111123467899999985
Q ss_pred CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (342)
Q Consensus 246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaL 296 (342)
.. ++...+ +.....+.+++.+|-.--| +-.++.+.+.+.+.++.++..
T Consensus 80 ~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 80 AY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred HH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 32 333332 2344456778877766444 345566777776556655443
No 314
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.46 E-value=0.031 Score=44.70 Aligned_cols=89 Identities=18% Similarity=0.284 Sum_probs=52.6
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC---HHH-HhhcCCEEEEc
Q 019387 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDE-VLREADVISLH 243 (342)
Q Consensus 168 vgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~-ll~~aDiV~l~ 243 (342)
|-|+|+|.+|+.+++.| +..+.+|++.|..++.. +.... .+.... .-...+ |++ =+.++|.|+++
T Consensus 1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~-~~~~~--------~~~~~i-~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERV-EELRE--------EGVEVI-YGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHH-HHHHH--------TTSEEE-ES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHH-HHHHh--------cccccc-cccchhhhHHhhcCccccCEEEEc
Confidence 57999999999999998 56667999999987542 22111 111101 011122 222 25789999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEE
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILV 269 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lI 269 (342)
.+.. ..++.-...++.+.+...+|
T Consensus 70 ~~~d--~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 70 TDDD--EENLLIALLARELNPDIRII 93 (116)
T ss_dssp SSSH--HHHHHHHHHHHHHTTTSEEE
T ss_pred cCCH--HHHHHHHHHHHHHCCCCeEE
Confidence 8743 34444445556555555554
No 315
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.46 E-value=0.18 Score=45.56 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=61.9
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC-ccccccCCHHH-H----hhcC
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDE-V----LREA 237 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~-l----l~~a 237 (342)
.|++|.|.|.|.+|+.+++.+ +..|.+|++.++..... +. ...+ +... ..... .+..+ + -...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~-~~-~~~~-------g~~~~~~~~~-~~~~~~~~~~~~~~~ 202 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKL-EL-AKEL-------GADHVIDYKE-EDLEEELRLTGGGGA 202 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHH-HH-HHHh-------CCceeccCCc-CCHHHHHHHhcCCCC
Confidence 578999999999999999984 89999999998875432 11 1111 1000 00001 11221 1 2458
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v 277 (342)
|+++.+.+.. ..-...++.|+++..+++++.....
T Consensus 203 d~vi~~~~~~-----~~~~~~~~~l~~~G~~v~~~~~~~~ 237 (271)
T cd05188 203 DVVIDAVGGP-----ETLAQALRLLRPGGRIVVVGGTSGG 237 (271)
T ss_pred CEEEECCCCH-----HHHHHHHHhcccCCEEEEEccCCCC
Confidence 9998887631 1234567888999999998866543
No 316
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.46 E-value=0.023 Score=55.53 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=45.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
.++|||||-|..|+.++.. ++.+|.+|+++|+.+........+ .. ....+.....+.++++.||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~a-a~~lG~~v~~~d~~~~~pa~~~ad--------~~-~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALA-AAPLGYKVIVLDPDPDSPAAQVAD--------EV-IVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHH-HHHcCCEEEEEeCCCCCchhHhCc--------eE-EecCCCCHHHHHHHHhcCCEEEe
Confidence 4799999999999999998 488999999999886542111100 00 00011122356777888888753
No 317
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.46 E-value=0.039 Score=54.99 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=48.3
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhh-hhhhccCCCCccccccCCHHHH-hhcCCEEEEc
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEV-LREADVISLH 243 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l-l~~aDiV~l~ 243 (342)
++|.|+|+|.+|+.+|+.| ...|.+|+++|++++.. +...+..+ .+.. + .......++++ +.++|.|+++
T Consensus 1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~-~~~~~~~~~~~~~--g----d~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERL-RRLQDRLDVRTVV--G----NGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHhhcCEEEEE--e----CCCCHHHHHHcCCCcCCEEEEe
Confidence 3789999999999999997 67899999999877542 22111000 0000 0 01112345555 7889999999
Q ss_pred CCCC
Q 019387 244 PVLD 247 (342)
Q Consensus 244 ~pl~ 247 (342)
++..
T Consensus 73 ~~~~ 76 (453)
T PRK09496 73 TDSD 76 (453)
T ss_pred cCCh
Confidence 8753
No 318
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.44 E-value=0.088 Score=50.01 Aligned_cols=101 Identities=13% Similarity=0.141 Sum_probs=60.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHhh-----cC
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLR-----EA 237 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~-----~a 237 (342)
..++||||.|+||+..+..+.+.-++++. ++|+.++....++-..+ + +. ...++++++. +.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~-------G-----i~~~~~~ie~LL~~~~~~dI 71 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL-------G-----VATSAEGIDGLLAMPEFDDI 71 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc-------C-----CCcccCCHHHHHhCcCCCCC
Confidence 35899999999999977665444467766 46776643221111111 1 11 2357888885 58
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC---CCcc----cCHHHH
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS---RGPV----IDEVAL 282 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva---RG~~----vd~~aL 282 (342)
|+|+.+.|.. .+. +-.....+.|..+|+-+ +|++ |+.+++
T Consensus 72 DiVf~AT~a~--~H~---e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~ 118 (302)
T PRK08300 72 DIVFDATSAG--AHV---RHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH 118 (302)
T ss_pred CEEEECCCHH--HHH---HHHHHHHHcCCeEEECCccccCCcccCcCCHHHH
Confidence 8899998742 221 12223346788888865 5655 455544
No 319
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.42 E-value=0.054 Score=50.22 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=66.1
Q ss_pred cccccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 159 ~~~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a 237 (342)
.|.+|...|++|+|+ |.||..+||+|+ +-++.....-+....+..... .+++. +.+-....+++..+.+.
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la-~~~~~~~ll~r~aea~~rq~l----~~l~e----~~~~~~i~s~d~~~~~e 231 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLA-PKVGVKELLLRDAEARNRQRL----TLLQE----ELGRGKIMSLDYALPQE 231 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhc-cccCEEEEecccHHhhhhhhh----hhccc----ccCCCeeeecccccccc
Confidence 468899999999997 999999999984 666654443322221111100 01111 11112235677666777
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV 280 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~ 280 (342)
|+++-.... .+-..|+.. ++|||+.+|+-++..=+|+.
T Consensus 232 ~i~v~vAs~--~~g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 232 DILVWVASM--PKGVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred ceEEEEeec--CCCceechh---hccCCeEEEcCCcCcccccc
Confidence 776544322 234566664 47899999999998877664
No 320
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.41 E-value=0.14 Score=48.19 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=74.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
....|+++.|+|-|..+++++..| ...|+ +|++++|..++ .++..+.+.. .+. ........+++.. .++|+
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r-a~~La~~~~~----~~~-~~~~~~~~~~~~~-~~~dl 193 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER-AEELADLFGE----LGA-AVEAAALADLEGL-EEADL 193 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhhh----ccc-ccccccccccccc-cccCE
Confidence 345799999999999999999997 57785 79999998754 2332222211 110 0001111222222 26999
Q ss_pred EEEcCCCCcccc---cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387 240 ISLHPVLDKTTY---HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 240 V~l~~pl~~~t~---~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~ 290 (342)
|+.++|..-.-. .+++ .+.++++.++.++--.+. ++.=|..|=+.|.
T Consensus 194 iINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G~ 243 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQGA 243 (283)
T ss_pred EEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcCC
Confidence 999999754432 1334 567889999999977765 4444555544453
No 321
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.30 E-value=0.074 Score=53.17 Aligned_cols=132 Identities=20% Similarity=0.198 Sum_probs=78.7
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
..|++|.|+|+|.-|.++|+.| ...|++|+++|.++.......... ......+..-.-..+.+..+|+|+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~~--------~~~~i~~~~g~~~~~~~~~~d~vV~ 75 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQPL--------LLEGIEVELGSHDDEDLAEFDLVVK 75 (448)
T ss_pred ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhhh--------hccCceeecCccchhccccCCEEEE
Confidence 3499999999999999999998 688999999997765411100000 0000001000111156788999998
Q ss_pred cCCCCcccc----------cccCHH-HHhcC--CCCcEEEEcCCCcccCHHHHHHHHHc--------CCceEEEEecCCC
Q 019387 243 HPVLDKTTY----------HLINKE-RLATM--KKEAILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFEV 301 (342)
Q Consensus 243 ~~pl~~~t~----------~li~~~-~l~~m--k~ga~lINvaRG~~vd~~aL~~aL~~--------g~i~~aaLDV~~~ 301 (342)
..-..+.+. .++++- .|-+. +.-.+-|.-+-|..-.+.-+...|++ |.|...++|+.++
T Consensus 76 SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~ 155 (448)
T COG0771 76 SPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ 155 (448)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence 743322222 233322 22222 22255555567887766666665554 6678888999987
Q ss_pred CC
Q 019387 302 TE 303 (342)
Q Consensus 302 EP 303 (342)
++
T Consensus 156 ~~ 157 (448)
T COG0771 156 AE 157 (448)
T ss_pred cC
Confidence 44
No 322
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.30 E-value=0.072 Score=44.56 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.7
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~ 198 (342)
+|.|+|+|.+|..+|+.|+ ..|. ++..+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence 5899999999999999985 6777 68888865
No 323
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.27 E-value=0.06 Score=51.80 Aligned_cols=116 Identities=13% Similarity=0.192 Sum_probs=64.4
Q ss_pred eEEEEecCHHHHHHHHHHHh-------cCCcEEEE-EcCCchhH------HHHHHhhhhhhhhccCCCCcccc-ccCCHH
Q 019387 167 TVGVIGAGRIGSAYARMMVE-------GFKMNLIY-YDLYQATR------LEKFVTAYGQFLKANGEQPVTWK-RASSMD 231 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~-------afg~~V~~-~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 231 (342)
+|+|+|||+||+.+++.|.+ +++.+|.+ .|++..-. .+.+.+ +... +.. ..+. ...+++
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~----~~~~-g~l-~~~~~~~~~~~ 75 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIIS----YKEK-GRL-EEIDYEKIKFD 75 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHH----HHhc-Ccc-ccCCCCcCCHH
Confidence 79999999999999998743 26777664 45442110 001000 0000 100 0000 011456
Q ss_pred HHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcC
Q 019387 232 EVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQN 289 (342)
Q Consensus 232 ~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g 289 (342)
+++ .++|+|+=|.|.+ ++-.-.-.-....++.|.-+|-..-|.+. .-+.|.++.+++
T Consensus 76 ~ll~~~~DVvVE~t~~~-~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~ 134 (326)
T PRK06392 76 EIFEIKPDVIVDVTPAS-KDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN 134 (326)
T ss_pred HHhcCCCCEEEECCCCC-CcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence 554 4689999999853 22111123345667788888888877775 445565655544
No 324
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.24 E-value=0.081 Score=50.31 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=61.3
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
++|+|+|.|.+|+.+|..|+ ..| -++..+|+.++.. +.....+.......+ ..... ...+.+ .+++||+|+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~-~~g~~~ei~l~D~~~~~~-~~~a~dL~~~~~~~~-~~~~i-~~~~~~-~l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLV-NQGIADELVLIDINEEKA-EGEALDLEDALAFLP-SPVKI-KAGDYS-DCKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCcchh-hHhHhhHHHHhhccC-CCeEE-EcCCHH-HhCCCCEEEEc
Confidence 47999999999999999874 556 4899999976542 221111100000000 01111 123444 47899999999
Q ss_pred CCCCcc---cc--------cccC--HHHHhcCCCCcEEEEcCCCcccCH
Q 019387 244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCSRGPVIDE 279 (342)
Q Consensus 244 ~pl~~~---t~--------~li~--~~~l~~mk~ga~lINvaRG~~vd~ 279 (342)
...... ++ .++. ...+....+.+++|+++ ..+|.
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~ 122 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDV 122 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHH
Confidence 765211 11 1121 13455556788999997 44443
No 325
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.23 E-value=0.2 Score=49.90 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=69.6
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc-CCEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-aDiV~ 241 (342)
+.||++.|+|.|.+|.++|+.| ...|++|.++|.......+. ... +...+.. ........+++.. .|+|+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~~----l~~~g~~---~~~~~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQE----LLEEGIK---VICGSHPLELLDEDFDLMV 73 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HHH----HHhcCCE---EEeCCCCHHHhcCcCCEEE
Confidence 5789999999999999999998 68899999999765321111 000 1111111 1100112234444 89888
Q ss_pred EcCCCCcc----------cccccCHHHH-hcC-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 242 LHPVLDKT----------TYHLINKERL-ATM-KKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 242 l~~pl~~~----------t~~li~~~~l-~~m-k~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
...-..+. ...++.+..| ..+ +...+-|--+.|..-...-|...|+.
T Consensus 74 ~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 74 KNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 76522222 1233444333 233 34456677789998888888888865
No 326
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.22 E-value=0.073 Score=51.19 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=30.1
Q ss_pred eEEEEecCHHHHHHHHHHHhcC----CcEEEEEcCCchhHHHHHHhhhhh
Q 019387 167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQ 212 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~af----g~~V~~~d~~~~~~~~~~~~~~~~ 212 (342)
+|||+|+|+||+.+.+.+ ... +++|...+.....+...+...|++
T Consensus 1 ~IaInGfGrIGR~vlr~l-~e~~~~~~~~vvaInd~~~~~~~ayll~yDS 49 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRAL-YESGERLGIEVVALNELADQASMAHLLRYDT 49 (325)
T ss_pred CEEEECCCHHHHHHHHHH-HhcCCCCCeEEEEEecCCCHHHHHHHHhhCc
Confidence 589999999999999986 333 378776554333444444444543
No 327
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.19 E-value=0.047 Score=47.64 Aligned_cols=88 Identities=19% Similarity=0.295 Sum_probs=53.6
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch---h--------------HHHHHHhhhhhhhhccCCCCcccc---
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA---T--------------RLEKFVTAYGQFLKANGEQPVTWK--- 225 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~---~--------------~~~~~~~~~~~~~~~~~~~~~~~~--- 225 (342)
+|+|+|.|.+|..+|+.|+ ..|. ++..+|...- . +.+.... .+++-. +...+.
T Consensus 1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~----~l~~ln-p~v~i~~~~ 74 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKE----NLREIN-PFVKIEAIN 74 (174)
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHH----HHHHHC-CCCEEEEEE
Confidence 5899999999999999985 5677 5888887641 0 1010000 010000 001110
Q ss_pred ---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 226 ---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 226 ---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
...+++++++++|+|+.|. .+.+++..++....+.
T Consensus 75 ~~~~~~~~~~~l~~~DlVi~~~-d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 75 IKIDENNLEGLFGDCDIVVEAF-DNAETKAMLAESLLGN 112 (174)
T ss_pred eecChhhHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHH
Confidence 1134567889999999995 4677887777666554
No 328
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.13 E-value=0.055 Score=49.75 Aligned_cols=96 Identities=19% Similarity=0.294 Sum_probs=59.0
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH------------------HHHHHhhhhhhhhccCCCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR------------------LEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~------------------~~~~~~~~~~~~~~~~~~~ 221 (342)
..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|...-.. .+...+...+. .....
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i---np~v~ 95 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI---NPHIA 95 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH---CCCcE
Confidence 4689999999999999999999985 5666 677777543210 00000000000 00000
Q ss_pred c-ccc-c--cCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 222 V-TWK-R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 222 ~-~~~-~--~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
. ... . ..++++++.++|+|+.|.. +.+++..+++...+.
T Consensus 96 i~~~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~ 138 (240)
T TIGR02355 96 INPINAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA 138 (240)
T ss_pred EEEEeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc
Confidence 0 000 1 1246678899999999984 678888888776654
No 329
>PRK11579 putative oxidoreductase; Provisional
Probab=95.07 E-value=0.063 Score=51.86 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=44.6
Q ss_pred CeEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEE
Q 019387 166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (342)
Q Consensus 166 ktvgIvG~G~IG~~-vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~ 241 (342)
-+|||||+|.||+. .+..+.+.-++++. ++|+.++.. . +.+ . ....+.+++++++ +-|+|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~-~---~~~-------~----~~~~~~~~~ell~~~~vD~V~ 69 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV-K---ADW-------P----TVTVVSEPQHLFNDPNIDLIV 69 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH-H---hhC-------C----CCceeCCHHHHhcCCCCCEEE
Confidence 38999999999985 45655333478887 478765432 1 111 0 1123579999996 469999
Q ss_pred EcCCCC
Q 019387 242 LHPVLD 247 (342)
Q Consensus 242 l~~pl~ 247 (342)
+|.|..
T Consensus 70 I~tp~~ 75 (346)
T PRK11579 70 IPTPND 75 (346)
T ss_pred EcCCcH
Confidence 999954
No 330
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.06 E-value=0.15 Score=49.89 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=51.0
Q ss_pred cCCCeEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH
Q 019387 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (342)
Q Consensus 163 L~gktvgIvG~G----------~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (342)
|.||+|||+|+- .-...++++| +..|++|.+|||........ .+ + ......++++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~---~~----------~-~~~~~~~~~~ 372 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR---NF----------P-DVELESDAEE 372 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh---cC----------C-CceEeCCHHH
Confidence 899999999983 4567788887 78999999999976432111 00 0 2345689999
Q ss_pred HhhcCCEEEEcCC
Q 019387 233 VLREADVISLHPV 245 (342)
Q Consensus 233 ll~~aDiV~l~~p 245 (342)
++++||.++++.-
T Consensus 373 ~~~~aDaivi~te 385 (414)
T COG1004 373 ALKGADAIVINTE 385 (414)
T ss_pred HHhhCCEEEEecc
Confidence 9999999998864
No 331
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.04 E-value=0.057 Score=51.16 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=29.5
Q ss_pred CHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 229 ~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
.++++++++|+|+.|+. +-++|.+++..-...-| .+||.+
T Consensus 101 ~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~~~k---~~I~aa 140 (307)
T cd01486 101 RLEELIKDHDVIFLLTD-SRESRWLPTLLSAAKNK---LVINAA 140 (307)
T ss_pred HHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHhCC---cEEEEE
Confidence 46789999999999994 67888888776554333 566543
No 332
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.99 E-value=0.1 Score=53.49 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=66.3
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READV 239 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDi 239 (342)
..+.||++.|+|.|.+|++++..| ...|++|++++++.+. .+...+.+ +.. .....++.+.. ..+|+
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~-a~~la~~l-------~~~---~~~~~~~~~~~~~~~di 442 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER-AKELADAV-------GGQ---ALTLADLENFHPEEGMI 442 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHh-------CCc---eeeHhHhhhhccccCeE
Confidence 357899999999999999999998 5789999999987543 22222211 000 01112222222 35788
Q ss_pred EEEcCCCCcc--cc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387 240 ISLHPVLDKT--TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 240 V~l~~pl~~~--t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~ 290 (342)
|+.+.|..-. +. ..++ ...++++.+++++.-.+. ++.=|.+|-+.|.
T Consensus 443 iINtT~vGm~~~~~~~pl~---~~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G~ 492 (529)
T PLN02520 443 LANTTSVGMQPNVDETPIS---KHALKHYSLVFDAVYTPK-ITRLLREAEESGA 492 (529)
T ss_pred EEecccCCCCCCCCCCccc---HhhCCCCCEEEEeccCCC-cCHHHHHHHHCCC
Confidence 8888875421 11 1132 234666777777765553 2333444444443
No 333
>PRK06153 hypothetical protein; Provisional
Probab=94.98 E-value=0.068 Score=52.33 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=66.4
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--------------hHH-H--HHHhhhhhhhhccC--CC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------TRL-E--KFVTAYGQFLKANG--EQ 220 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~--------------~~~-~--~~~~~~~~~~~~~~--~~ 220 (342)
..|.+++|+|||+|.+|..++..|+ ..|. ++..+|...- ..+ . ...+.+...+..-. ..
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~ 250 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIV 250 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEE
Confidence 3689999999999999999999986 5566 7888875411 000 0 01111111111111 00
Q ss_pred Ccc-ccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387 221 PVT-WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (342)
Q Consensus 221 ~~~-~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd 278 (342)
... .-....+ +.+.++|+|+.|+. +.+++.++++.... .|.-+|++|=|-.++
T Consensus 251 ~~~~~I~~~n~-~~L~~~DiV~dcvD-n~~aR~~ln~~a~~---~gIP~Id~G~~l~~~ 304 (393)
T PRK06153 251 PHPEYIDEDNV-DELDGFTFVFVCVD-KGSSRKLIVDYLEA---LGIPFIDVGMGLELS 304 (393)
T ss_pred EEeecCCHHHH-HHhcCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEeeecceec
Confidence 000 0011122 35788999999997 46678888877655 366788887764443
No 334
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.94 E-value=0.087 Score=51.61 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=60.6
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhccCCCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 221 (342)
..|.+++|.|+|+|.+|..+++.|+ ..|+ ++..+|...-. +.+......... .....
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~---np~v~ 112 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI---QPDIR 112 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH---CCCCe
Confidence 5689999999999999999999985 6787 78888865210 111101111000 00000
Q ss_pred c-ccc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 222 V-TWK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 222 ~-~~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
. ... ...+++++++++|+|+.|+. +.+++.++|+...+.
T Consensus 113 i~~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~ 155 (370)
T PRK05600 113 VNALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEIT 155 (370)
T ss_pred eEEeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 1 000 11356688999999988875 678888888765554
No 335
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.86 E-value=0.11 Score=52.73 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=68.3
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+.+++|.|+|+|..|.++|+.| +..|.+|.++|..... ..... . ..+. ...+.......+.+.++|+|+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~L-~-------~~~~-~~~~~~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTREAPPNLAAL-R-------AELP-DAEFVGGPFDPALLDGVDLVA 74 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCCCchhHHHH-H-------hhcC-CcEEEeCCCchhHhcCCCEEE
Confidence 5688999999999999999997 7899999999976532 11111 0 1110 001111111234556899998
Q ss_pred Ec--CCCC-----cc-------cccccCHHH-H-hcC--------CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387 242 LH--PVLD-----KT-------TYHLINKER-L-ATM--------KKEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 242 l~--~pl~-----~~-------t~~li~~~~-l-~~m--------k~ga~lINvaRG~~vd~~aL~~aL~~g~ 290 (342)
.. +|.+ |. ...+++... + ..+ ++..+-|-=+-|..-...-|.+.|++..
T Consensus 75 ~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 75 LSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred ECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 86 3332 11 123333222 1 112 1235566667888877777777776533
No 336
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.84 E-value=0.041 Score=44.43 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=56.6
Q ss_pred ecCHHHHHHHHHHHhc---CCcEEEE-EcCC--chhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEEc
Q 019387 172 GAGRIGSAYARMMVEG---FKMNLIY-YDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH 243 (342)
Q Consensus 172 G~G~IG~~vA~~l~~a---fg~~V~~-~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l~ 243 (342)
|+|+||+.+++.|.+. +++++.+ ++++ ......... .......++++++. ..|+|+=|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF--------------PDEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH--------------THSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc--------------ccccccCCHHHHhcCcCCCEEEEC
Confidence 8999999999998432 2677774 5666 111111000 01123578999988 99999999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL 286 (342)
.+.. . +.+-....++.|.-+|-.+-|.+. ...+++.|
T Consensus 67 t~~~-~----~~~~~~~~L~~G~~VVt~nk~ala-~~~~~~~L 103 (117)
T PF03447_consen 67 TSSE-A----VAEYYEKALERGKHVVTANKGALA-DEALYEEL 103 (117)
T ss_dssp SSCH-H----HHHHHHHHHHTTCEEEES-HHHHH-SHHHHHHH
T ss_pred CCch-H----HHHHHHHHHHCCCeEEEECHHHhh-hHHHHHHH
Confidence 5532 2 224456677889999999998888 33344443
No 337
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.84 E-value=0.072 Score=50.84 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=32.1
Q ss_pred CeEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYG 211 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~ 211 (342)
-+|||=|||+||+.+++.+...- .++|++.+.-.+....++...|+
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyD 48 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYD 48 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhc
Confidence 37999999999999999974334 49999876533333444444443
No 338
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.82 E-value=0.1 Score=49.70 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=56.8
Q ss_pred eEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCC--CCccccccCCHHHHhhcCCEEEE
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
+|+|||.|.+|..+|..|+ ..| -+|..+|+..........+ +..... .+... ...+. +.+++||+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~d-----l~~~~~~~~~~~i-~~~d~-~~l~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMD-----LAHGTPFVKPVRI-YAGDY-ADCKGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHH-----HHccccccCCeEE-eeCCH-HHhCCCCEEEE
Confidence 6999999999999999874 556 5899999876432111111 110000 00111 12344 45799999999
Q ss_pred cCCCCcc---cc--------cccC--HHHHhcCCCCcEEEEcC
Q 019387 243 HPVLDKT---TY--------HLIN--KERLATMKKEAILVNCS 272 (342)
Q Consensus 243 ~~pl~~~---t~--------~li~--~~~l~~mk~ga~lINva 272 (342)
+.+.... ++ .++. .+.+....+.+++++++
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9886322 11 1121 12334445677888874
No 339
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.81 E-value=0.059 Score=47.35 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=47.3
Q ss_pred eEEEEecCHHHHHHHHH-HHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387 167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~-l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l 242 (342)
++.|||.|++|++++.. +.+..||++. +||..++.. -. ...+..+...++|++.++ +.|+.++
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V-G~------------~~~~v~V~~~d~le~~v~~~dv~iaiL 152 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV-GT------------KIGDVPVYDLDDLEKFVKKNDVEIAIL 152 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh-Cc------------ccCCeeeechHHHHHHHHhcCccEEEE
Confidence 69999999999999963 2245688866 689877531 11 112244556678888888 5677899
Q ss_pred cCCC
Q 019387 243 HPVL 246 (342)
Q Consensus 243 ~~pl 246 (342)
|+|.
T Consensus 153 tVPa 156 (211)
T COG2344 153 TVPA 156 (211)
T ss_pred EccH
Confidence 9994
No 340
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.76 E-value=0.26 Score=48.54 Aligned_cols=171 Identities=19% Similarity=0.136 Sum_probs=107.0
Q ss_pred hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (342)
Q Consensus 107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~ 186 (342)
+..|+|.|+--. .+|=.+++-+++.+|- .|+.|...+|.+.|.|.-|-.+++.| .
T Consensus 165 ~~~IPvFhDDqq---GTaiv~lA~llnalk~---------------------~gk~l~d~kiv~~GAGAAgiaia~~l-~ 219 (432)
T COG0281 165 RMNIPVFHDDQQ---GTAIVTLAALLNALKL---------------------TGKKLKDQKIVINGAGAAGIAIADLL-V 219 (432)
T ss_pred cCCCCccccccc---HHHHHHHHHHHHHHHH---------------------hCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence 445777776553 4566677777777752 35678999999999999999999998 7
Q ss_pred cCCc---EEEEEcCCch---hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387 187 GFKM---NLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (342)
Q Consensus 187 afg~---~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~ 260 (342)
+.|+ +|+.+|+..- .+.+.....+......+... .... ++.+..+|+++-+-- .|.|.++.++
T Consensus 220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~-----~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~ 288 (432)
T COG0281 220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG-----ERTL-DLALAGADVLIGVSG-----VGAFTEEMVK 288 (432)
T ss_pred HhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhc-----cccc-cccccCCCEEEEcCC-----CCCcCHHHHH
Confidence 8888 5888988742 11000000000000000000 0111 447889999986632 2999999999
Q ss_pred cCCCCcEEEEcCCCcc-cCHHHHHHHHHcC-CceEEEEecCCCCCCCccccccccc
Q 019387 261 TMKKEAILVNCSRGPV-IDEVALVEHLKQN-PMFRVGLDVFEVTELGFSSFKHIST 314 (342)
Q Consensus 261 ~mk~ga~lINvaRG~~-vd~~aL~~aL~~g-~i~~aaLDV~~~EP~~~~~tPhia~ 314 (342)
.|.+..++.=.+--.. +..++..++ ..| .|-+-+---+.+.=.|++..|.|.-
T Consensus 289 ~Ma~~PiIfalaNP~pEi~Pe~a~~~-~~~aaivaTGrsd~PnQvNNvL~FPgIfr 343 (432)
T COG0281 289 EMAKHPIIFALANPTPEITPEDAKEW-GDGAAIVATGRSDYPNQVNNVLIFPGIFR 343 (432)
T ss_pred HhccCCEEeecCCCCccCCHHHHhhc-CCCCEEEEeCCCCCcccccceeEcchhhh
Confidence 9999988887765443 233333333 222 4555555555554578899898843
No 341
>PRK08328 hypothetical protein; Provisional
Probab=94.76 E-value=0.076 Score=48.51 Aligned_cols=105 Identities=22% Similarity=0.198 Sum_probs=61.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHH----------------hhhhhhhhccCCCCcc
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFV----------------TAYGQFLKANGEQPVT 223 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 223 (342)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+. .... +.....+.. -.+...
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~-~np~v~ 99 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPEL-SNLNRQILHWEEDLGKNPKPLSAKWKLER-FNSDIK 99 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccCh-hhhccccccChhhcCchHHHHHHHHHHHH-hCCCCE
Confidence 5689999999999999999999985 6677 677777543110 0000 000000000 000011
Q ss_pred cc------ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 224 WK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 224 ~~------~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
+. ...+++++++++|+|+.|+.. .+++.++++...+ .|.-+|+.+
T Consensus 100 v~~~~~~~~~~~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~---~~ip~i~g~ 150 (231)
T PRK08328 100 IETFVGRLSEENIDEVLKGVDVIVDCLDN-FETRYLLDDYAHK---KGIPLVHGA 150 (231)
T ss_pred EEEEeccCCHHHHHHHHhcCCEEEECCCC-HHHHHHHHHHHHH---cCCCEEEEe
Confidence 10 123466788999999999854 6788777764433 344455543
No 342
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.75 E-value=0.31 Score=44.53 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=74.8
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH------------HHhhhhhhhhccCCCCcccc
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGEQPVTWK 225 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~ 225 (342)
..|.+++|.|+|+|.+|..+|+.|+ ..|. +++.+|...-.. +-. ..+.....+..-. +...+.
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~La-r~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~in-P~~~V~ 84 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALA-RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDIN-PECEVD 84 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHC-CCcEEE
Confidence 3578999999999999999999986 4566 777787543110 000 0000000000000 001111
Q ss_pred ------ccCCHHHHhh-cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC-----------------HHH
Q 019387 226 ------RASSMDEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID-----------------EVA 281 (342)
Q Consensus 226 ------~~~~l~~ll~-~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd-----------------~~a 281 (342)
...++++++. +.|+|+.|+.. ...+..+++...+. .=.++...+-|+-.| ...
T Consensus 85 ~~~~~i~~~~~~~l~~~~~D~VvdaiD~-~~~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~ 161 (231)
T cd00755 85 AVEEFLTPDNSEDLLGGDPDFVVDAIDS-IRAKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARK 161 (231)
T ss_pred EeeeecCHhHHHHHhcCCCCEEEEcCCC-HHHHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHH
Confidence 1134566664 68999999864 44444444432221 123444455555443 234
Q ss_pred HHHHHHcCCceEEEEecCCCCCCC
Q 019387 282 LVEHLKQNPMFRVGLDVFEVTELG 305 (342)
Q Consensus 282 L~~aL~~g~i~~aaLDV~~~EP~~ 305 (342)
+-+.|++..+..-.-=||..|+|.
T Consensus 162 ~R~~Lrk~~~~~~~~~v~S~E~~~ 185 (231)
T cd00755 162 VRKRLRKRGIFFGVPVVYSTEPPD 185 (231)
T ss_pred HHHHHHHcCCCCCeEEEeCCCCCC
Confidence 556677777752233478888743
No 343
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.74 E-value=0.097 Score=52.82 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=70.5
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..+.+++|.|+|.|.+|.++|+.| ...|.+|.++|............ .+...+.. +..-...+ ....+|+|
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~~----~l~~~gv~---~~~~~~~~-~~~~~D~V 82 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALAA----ILEALGAT---VRLGPGPT-LPEDTDLV 82 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHHH----HHHHcCCE---EEECCCcc-ccCCCCEE
Confidence 457799999999999999999997 68999999999765322111111 01111211 11001111 34569999
Q ss_pred EEcCCCCcccc----------cccCHHHH--hcCCC----CcEEEEcCCCcccCHHHHHHHHHc
Q 019387 241 SLHPVLDKTTY----------HLINKERL--ATMKK----EAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 241 ~l~~pl~~~t~----------~li~~~~l--~~mk~----ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
++..-..+.+. .++++..| ..+++ ..+-|-=+-|..-...=|.+.|+.
T Consensus 83 v~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 83 VTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred EECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 88864433321 23343332 33422 246666678888877777777765
No 344
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.71 E-value=0.12 Score=50.02 Aligned_cols=102 Identities=16% Similarity=0.251 Sum_probs=57.9
Q ss_pred CeEEEEec-CHHHHHHHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 166 ktvgIvG~-G~IG~~vA~~l~~af-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
.+|+|+|. |.+|+.+++.| ... +.++.+ ++.+... .......+.. . .+.....+. ..+.++++.++|+|++
T Consensus 1 ~kVaIiGATG~vG~ellr~L-~~hP~~el~~l~~s~~sa-gk~~~~~~~~-l--~~~~~~~~~-~~~~~~~~~~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLL-LNHPEVEITYLVSSRESA-GKPVSEVHPH-L--RGLVDLNLE-PIDEEEIAEDADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHH-HcCCCceEEEEeccchhc-CCChHHhCcc-c--cccCCceee-cCCHHHhhcCCCEEEE
Confidence 37999998 99999999998 455 678774 4544311 0001011100 0 000011111 1245666668999999
Q ss_pred cCCCCcccccccCHHHHhcC-CCCcEEEEcCCCcccCH
Q 019387 243 HPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDE 279 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~m-k~ga~lINvaRG~~vd~ 279 (342)
|+|.. ...+....+ +.|..+|+.+-.-=.+.
T Consensus 75 alP~~------~s~~~~~~~~~~G~~VIDlS~~fR~~~ 106 (346)
T TIGR01850 75 ALPHG------VSAELAPELLAAGVKVIDLSADFRLKD 106 (346)
T ss_pred CCCch------HHHHHHHHHHhCCCEEEeCChhhhcCC
Confidence 99953 223333333 57899999874443443
No 345
>PRK08223 hypothetical protein; Validated
Probab=94.70 E-value=0.11 Score=48.91 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=57.9
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HH-------H-----HHhhhhhhhhc-cCCCCcc-
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-------K-----FVTAYGQFLKA-NGEQPVT- 223 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~~-------~-----~~~~~~~~~~~-~~~~~~~- 223 (342)
..|.+++|.|||+|.+|..+|..|+ ..|. ++..+|...-.. +. . ..+.....+.. .......
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~ 101 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA 101 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence 5689999999999999999999985 6676 566666432110 00 0 00000000000 0000010
Q ss_pred c---cccCCHHHHhhcCCEEEEcCCCC-cccccccCHHHHhc
Q 019387 224 W---KRASSMDEVLREADVISLHPVLD-KTTYHLINKERLAT 261 (342)
Q Consensus 224 ~---~~~~~l~~ll~~aDiV~l~~pl~-~~t~~li~~~~l~~ 261 (342)
+ -...+.+++++++|+|+.++..- -+++.++|....+.
T Consensus 102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~ 143 (287)
T PRK08223 102 FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR 143 (287)
T ss_pred EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc
Confidence 0 01346778899999998887531 26788888765553
No 346
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.67 E-value=0.056 Score=42.27 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=42.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL 242 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~l 242 (342)
.++.|+|.|+.|++++..+.+..|+++ .++|..+... +..-.+..-+.+++++.+. .|+-++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~---------------G~~i~gipV~~~~~~l~~~~~i~iaii 68 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI---------------GKEIGGIPVYGSMDELEEFIEIDIAII 68 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT---------------TSEETTEEEESSHHHHHHHCTTSEEEE
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc---------------CcEECCEEeeccHHHhhhhhCCCEEEE
Confidence 479999999999999854434456543 4566665421 1111123334577777776 999999
Q ss_pred cCCC
Q 019387 243 HPVL 246 (342)
Q Consensus 243 ~~pl 246 (342)
++|.
T Consensus 69 ~VP~ 72 (96)
T PF02629_consen 69 TVPA 72 (96)
T ss_dssp ES-H
T ss_pred EcCH
Confidence 9994
No 347
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.62 E-value=0.13 Score=51.66 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=72.4
Q ss_pred cCCCeEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 163 LKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~-vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
..+++|.|+|+|..|.+ +|+.| +..|.+|.++|.......+.. + ..+.. +....+ .+.+.++|+|+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~l-~-------~~gi~---~~~~~~-~~~~~~~d~vv 71 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQRL-L-------ELGAI---IFIGHD-AENIKDADVVV 71 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHHH-H-------HCCCE---EeCCCC-HHHCCCCCEEE
Confidence 46789999999999999 79997 789999999998765332221 1 11111 111112 34456799998
Q ss_pred EcCCCCccc----------ccccCHHHH-hc-CC-CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387 242 LHPVLDKTT----------YHLINKERL-AT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 242 l~~pl~~~t----------~~li~~~~l-~~-mk-~ga~lINvaRG~~vd~~aL~~aL~~g~ 290 (342)
...-..+.+ ..++++..| .. ++ ...+-|-=+-|..-...-+.+.|+...
T Consensus 72 ~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 72 YSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 765333321 234555433 33 33 245667778999888887778886543
No 348
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.60 E-value=0.43 Score=47.65 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=60.8
Q ss_pred ccccCCCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC
Q 019387 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (342)
Q Consensus 160 ~~~L~gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (342)
+..+.|++|+|+|+ ..-+..+++.| ...|.+|.+|||........ ..+ + ...
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~--~~~-------~--------~~~ 370 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR--REY-------G--------IIP 370 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH--Hhc-------C--------ccc
Confidence 34688999999999 56678899987 68899999999984321110 000 0 011
Q ss_pred HHH-HhhcCCEEEEcCCCCcccccccCHHHHh-cCCCCcEEEEcCCCcc
Q 019387 230 MDE-VLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV 276 (342)
Q Consensus 230 l~~-ll~~aDiV~l~~pl~~~t~~li~~~~l~-~mk~ga~lINvaRG~~ 276 (342)
+++ .+..||.|+++..- ++-+. ++-+.+. .||...++|+ +|+-+
T Consensus 371 ~~~~~~~~ad~vvi~t~h-~~f~~-~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 371 VSEVKSSHYDAIIVAVGH-QQFKQ-MGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred chhhhhcCCCEEEEccCC-HHhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence 222 36789999999863 33332 4444443 4554458888 46654
No 349
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.57 E-value=0.094 Score=51.07 Aligned_cols=96 Identities=26% Similarity=0.176 Sum_probs=59.8
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhccCCCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP 221 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 221 (342)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-. +.+...+. ++. ..+.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~----l~~-~np~ 97 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREA----MLA-LNPD 97 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHH----HHH-HCCC
Confidence 5689999999999999999999985 6677 67777765310 11110000 110 0011
Q ss_pred cccc------ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387 222 VTWK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (342)
Q Consensus 222 ~~~~------~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk 263 (342)
..+. ...+..++++++|+|+.|.. +.+++.+++....+.-+
T Consensus 98 v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~~i 144 (355)
T PRK05597 98 VKVTVSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARLGI 144 (355)
T ss_pred cEEEEEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 1111 11234678899999999985 57888888876555433
No 350
>PLN02602 lactate dehydrogenase
Probab=94.56 E-value=0.17 Score=49.13 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=58.8
Q ss_pred CeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
++|+|||.|+||..+|-.|+ +++.-++..+|...+.......+-... ..-.+ ...+....+.++ +++||+|+++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~-~~~~~--~~~i~~~~dy~~-~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHA-AAFLP--RTKILASTDYAV-TAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhh-hhcCC--CCEEEeCCCHHH-hCCCCEEEECC
Confidence 69999999999999998763 344458999998764321111111000 00000 012221235555 79999999985
Q ss_pred CCCc---ccc-cccC---------HHHHhcCCCCcEEEEcC
Q 019387 245 VLDK---TTY-HLIN---------KERLATMKKEAILVNCS 272 (342)
Q Consensus 245 pl~~---~t~-~li~---------~~~l~~mk~ga~lINva 272 (342)
-... +|+ .++. ...+....+.+++|+++
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4321 233 2221 12344456788999998
No 351
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.17 Score=51.20 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=70.4
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
..+.+++|.|+|+|.+|+++|+.| ...|.+|.++|+..... .+.... .+. .+.......+.+.++|+|
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l~~-------~gi---~~~~~~~~~~~~~~~d~v 78 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLIEV-------TGV---ADISTAEASDQLDSFSLV 78 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHHHh-------cCc---EEEeCCCchhHhcCCCEE
Confidence 357889999999999999999997 68899999999765432 111111 111 111111123345678998
Q ss_pred EEcCCC---Ccc-------cccccCHHHHhc-------C--CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 241 SLHPVL---DKT-------TYHLINKERLAT-------M--KKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 241 ~l~~pl---~~~-------t~~li~~~~l~~-------m--k~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
+....- +|+ ...++++-.+.. + +...+-|-=+-|..-...-|.+.|+..
T Consensus 79 V~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 79 VTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred EeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 776322 221 123344433321 1 223455666788888888888888653
No 352
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.42 E-value=0.22 Score=50.05 Aligned_cols=111 Identities=22% Similarity=0.250 Sum_probs=68.3
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
+.|++|.|+|+|.+|.++|+.| ...|.+|.++|....... . . ...+.. .... . .+-+.++|+|+.
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~-l-------~~~g~~---~~~~-~-~~~~~~~d~vv~ 71 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K-A-------AAAGIT---TADL-R-TADWSGFAALVL 71 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H-H-------HhcCcc---ccCC-C-hhHHcCCCEEEE
Confidence 6789999999999999999997 789999999997644221 1 1 011111 1111 1 123467998876
Q ss_pred cC--CCC-c----c---c----ccccCHHH-Hhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 243 HP--VLD-K----T---T----YHLINKER-LAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 243 ~~--pl~-~----~---t----~~li~~~~-l~~-m-----k~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
.. |.+ + . + ..++++.. +.. + +...+-|.=+.|..-...-|...|+.
T Consensus 72 sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 72 SPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred CCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 43 211 1 1 1 11244322 222 2 33456777789999888888888875
No 353
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.42 E-value=0.22 Score=47.35 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=57.2
Q ss_pred EEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 168 vgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
|+|||.|.+|..+|-.|+ ..| -++..+|...+.. +.............. ........+ .+.+++||+|+++..
T Consensus 1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~-~g~~~DL~~~~~~~~--~~~i~~~~~-~~~l~~aDiVIitag 75 (300)
T cd00300 1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKA-KGDALDLSHASAFLA--TGTIVRGGD-YADAADADIVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHH-HHHHHhHHHhccccC--CCeEEECCC-HHHhCCCCEEEEcCC
Confidence 589999999999998864 445 5899999976532 222111111111100 111111234 357899999999976
Q ss_pred CCccccc------------ccC--HHHHhcCCCCcEEEEcC
Q 019387 246 LDKTTYH------------LIN--KERLATMKKEAILVNCS 272 (342)
Q Consensus 246 l~~~t~~------------li~--~~~l~~mk~ga~lINva 272 (342)
. +...+ ++. ...+..-.|++.+||++
T Consensus 76 ~-p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 76 A-PRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 4 22212 111 12344445789999998
No 354
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=94.26 E-value=0.093 Score=44.78 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=32.2
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhh
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYG 211 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~~~~~ 211 (342)
+|||-|||+||+.+++.+...-.++|.+. |+.+......+...|+
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyD 47 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYD 47 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEE
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcc
Confidence 79999999999999998755667888865 5553444444444443
No 355
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.25 E-value=0.13 Score=51.99 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=71.0
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
+.||+|+|+|+|.-|.++|+.| ...|++|+++|.......+... . +...+. ......+ ++.+.++|+|+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~~----~-l~~~~~---~~~~~~~-~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREVG----A-LADAAL---LVETEAS-AQRLAAFDVVVK 75 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHHH----H-HhhcCE---EEeCCCC-hHHccCCCEEEE
Confidence 4689999999999999999997 6899999999965432211100 0 001010 0011112 345678999987
Q ss_pred cCCCCcc----------cccccCHHHH--hc-CC-----CCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 243 HPVLDKT----------TYHLINKERL--AT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 243 ~~pl~~~----------t~~li~~~~l--~~-mk-----~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
..-..+. ...++++-.| .. ++ ...+-|-=+-|..-...-+.+.|+.
T Consensus 76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 6533222 1234555443 33 32 2456677778988888877777764
No 356
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.18 E-value=0.15 Score=50.21 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=64.2
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHH-HHhhcCCEE
Q 019387 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLREADVI 240 (342)
Q Consensus 163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~aDiV 240 (342)
-..++|+|+|- |.+|+++.+.|...=++++..+...... .+.....+.. +.. + . .....+++ +.++++|+|
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~sa-G~~i~~~~~~-l~~-~--~--~~~~~~~~~~~~~~~DvV 108 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKA-GQSFGSVFPH-LIT-Q--D--LPNLVAVKDADFSDVDAV 108 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhc-CCCchhhCcc-ccC-c--c--ccceecCCHHHhcCCCEE
Confidence 35568999998 9999999999743336788877654321 1110000100 000 0 0 01112222 225889999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~ 284 (342)
++++|.. ...+....|+.|..+|+.+-.-..+.++.++
T Consensus 109 f~Alp~~------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 109 FCCLPHG------TTQEIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred EEcCCHH------HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence 9999852 3455555567789999998666666655444
No 357
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.26 Score=44.53 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=31.3
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~ 200 (342)
+.|+++.|.|- |.||+.+++.|+ .-|.+|++.+++..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~-~~G~~V~~~~r~~~ 41 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILA-GAGAHVVVNYRQKA 41 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeCCch
Confidence 56899999996 899999999984 67999998877653
No 358
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.04 E-value=0.14 Score=50.96 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=51.3
Q ss_pred ccccCCCeEEEEec----------CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccC
Q 019387 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (342)
Q Consensus 160 ~~~L~gktvgIvG~----------G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (342)
+.++.|++|+|+|+ ..-+..+++.| ...| ++|.+|||........ + .... ...
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~----~----------~~~~-~~~ 378 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK----L----------DGLV-TLV 378 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh----c----------cCce-eeC
Confidence 45688999999998 55778899997 5775 9999999985421000 0 0001 236
Q ss_pred CHHHHhhcCCEEEEcCCC
Q 019387 229 SMDEVLREADVISLHPVL 246 (342)
Q Consensus 229 ~l~~ll~~aDiV~l~~pl 246 (342)
++++.+++||.|+++.+-
T Consensus 379 ~~~~~~~~ad~vvi~t~~ 396 (415)
T PRK11064 379 SLDEALATADVLVMLVDH 396 (415)
T ss_pred CHHHHHhCCCEEEECCCC
Confidence 889999999999999873
No 359
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.03 E-value=0.095 Score=45.14 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=48.5
Q ss_pred EEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCCEEEEcC
Q 019387 168 VGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 168 vgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
|.|+| .|.+|+.+++.| ..-|.+|+++.|++.+..+ . .+... ..+....++.+.+.++|.|+.++
T Consensus 1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~---~--------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED---S--------PGVEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH---C--------TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc---c--------cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence 67899 499999999997 5778999999998764322 0 01111 11122346678889999999998
Q ss_pred CCCcc
Q 019387 245 VLDKT 249 (342)
Q Consensus 245 pl~~~ 249 (342)
+.+..
T Consensus 69 ~~~~~ 73 (183)
T PF13460_consen 69 GPPPK 73 (183)
T ss_dssp HSTTT
T ss_pred hhhcc
Confidence 75443
No 360
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=94.03 E-value=0.25 Score=47.34 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=66.6
Q ss_pred CCCeEEEEecCHHHHHHHHHHHh------cCCcEEEE--EcCCchhHHHHHHhhhhhh-----hhccCCCCccccccCCH
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVE------GFKMNLIY--YDLYQATRLEKFVTAYGQF-----LKANGEQPVTWKRASSM 230 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~------afg~~V~~--~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l 230 (342)
.-++|+|||.|+=|..+|+.++. .|..+|.. |+-......+...+...+. +.....-|..+...+++
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 35789999999999999997642 34444544 4332222112222211110 00111112233345789
Q ss_pred HHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 231 ~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
.+++.+||+++..+|- +-..-|-++...+.|+++..|....|
T Consensus 100 ~ea~~dADilvf~vPh--Qf~~~ic~~l~g~vk~~~~aISL~KG 141 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPH--QFIPRICEQLKGYVKPGATAISLIKG 141 (372)
T ss_pred HHHhccCCEEEEeCCh--hhHHHHHHHHhcccCCCCeEEEeecc
Confidence 9999999999999993 22233445677788999999998776
No 361
>PRK07411 hypothetical protein; Validated
Probab=94.00 E-value=0.14 Score=50.42 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=61.5
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--H-------HHHH-----hhhhhhhhc-cCCCCcc-
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-------EKFV-----TAYGQFLKA-NGEQPVT- 223 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~-------~~~~-----~~~~~~~~~-~~~~~~~- 223 (342)
..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-.. + +... +.....++. .......
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~ 112 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL 112 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence 5689999999999999999999985 6676 677777543110 0 0000 000000000 0000000
Q ss_pred cc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCC
Q 019387 224 WK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264 (342)
Q Consensus 224 ~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ 264 (342)
+. ...+..+++.++|+|+.|+. +.+++.++|+...+.-+|
T Consensus 113 ~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 113 YETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP 155 (390)
T ss_pred EecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 00 11234578899999999885 678899998877666555
No 362
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.96 E-value=0.22 Score=47.93 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=59.5
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc--hhHHHHHHhhhhhhhhccCCCCccccccCCHH--HHhhcCCE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EVLREADV 239 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ll~~aDi 239 (342)
.|++|.|+|.|.||...++. ++..|++|++.++.. +.+.+ +...++ ...... ...++. ......|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~-ak~~G~~vi~~~~~~~~~~~~~-~~~~~G-------a~~v~~-~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALL-LRLRGFEVYVLNRRDPPDPKAD-IVEELG-------ATYVNS-SKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCeEEEEecCCCCHHHHH-HHHHcC-------CEEecC-CccchhhhhhcCCCCE
Confidence 58899999999999999998 489999999998742 12222 111111 111100 011111 12245899
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|+-++... . .-...++.+++|..++.++.
T Consensus 242 vid~~g~~-~----~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 242 IIEATGVP-P----LAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EEECcCCH-H----HHHHHHHHccCCcEEEEEec
Confidence 99988631 1 22456888999999888764
No 363
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.90 E-value=0.32 Score=45.93 Aligned_cols=90 Identities=13% Similarity=0.207 Sum_probs=52.4
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEEc
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH 243 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l~ 243 (342)
+|||||.|+||+..+..+.+.-++++.+ +|+.++.....+-.. .+.. ....+.++++. +-|+|+++
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~-------~Gi~----~~~~~~e~ll~~~dIDaV~ia 71 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARE-------LGVK----TSAEGVDGLLANPDIDIVFDA 71 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHH-------CCCC----EEECCHHHHhcCCCCCEEEEC
Confidence 7999999999998876653434677664 677665321111111 1111 12357888885 57889999
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
.|... +. +-....++.|..+++-.
T Consensus 72 Tp~~~--H~---e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 72 TSAKA--HA---RHARLLAELGKIVIDLT 95 (285)
T ss_pred CCcHH--HH---HHHHHHHHcCCEEEECC
Confidence 98432 21 12233345666665543
No 364
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=93.90 E-value=0.25 Score=49.02 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=32.8
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYG 211 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~ 211 (342)
.+|||.|||+||+.++|.+...++++|++ +|+......-.+.-.|+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyD 132 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYD 132 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhc
Confidence 48999999999999999852248999887 66655444444444443
No 365
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.89 E-value=0.28 Score=48.97 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=59.9
Q ss_pred CeEEEEecCHHHHHHHHHHHhc---------CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh
Q 019387 166 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~a---------fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 235 (342)
-+|||+|+|.||+.+++.|.+. .+.++. ++|++.... .. ..........++++++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~-------------~~~~~~~~~~d~~~ll~ 69 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RG-------------VDLPGILLTTDPEELVN 69 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cC-------------CCCcccceeCCHHHHhh
Confidence 3799999999999998876321 245655 457664321 00 00011223468899985
Q ss_pred --cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC-HHHHHHHHHcCCc
Q 019387 236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID-EVALVEHLKQNPM 291 (342)
Q Consensus 236 --~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd-~~aL~~aL~~g~i 291 (342)
+-|+|+.|++.... . -.-..+.++.|.-+|-..-+.+.. -+.|.++.++...
T Consensus 70 d~~iDvVve~tg~~~~-~---~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 70 DPDIDIVVELMGGIEP-A---RELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CCCCCEEEECCCCchH-H---HHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 46999998864321 1 112225566666555433322222 2556666555443
No 366
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.89 E-value=0.22 Score=48.23 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=55.9
Q ss_pred CeEEEEec-CHHHHHHHHHHHhcC-CcEEEE-EcCCchh-HHHHHHhhhhhhhhccCCCCccccccCCHHH-HhhcCCEE
Q 019387 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVI 240 (342)
Q Consensus 166 ktvgIvG~-G~IG~~vA~~l~~af-g~~V~~-~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~aDiV 240 (342)
.+|+|+|. |.+|+.+++.|. .. ++++.+ .++.... .... .+.. . ....... ..++++ ...++|+|
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~-~~p~~elv~v~~~~~~g~~l~~---~~~~-~--~~~~~~~---~~~~~~~~~~~vD~V 72 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLL-NHPEVEIVAVTSRSSAGKPLSD---VHPH-L--RGLVDLV---LEPLDPEILAGADVV 72 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHH-cCCCceEEEEECccccCcchHH---hCcc-c--ccccCce---eecCCHHHhcCCCEE
Confidence 58999997 999999999974 54 678765 5532211 1111 0000 0 0000111 122222 45789999
Q ss_pred EEcCCCCcccccccCHHHHh-cCCCCcEEEEcCCCcccCHHH
Q 019387 241 SLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVA 281 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~-~mk~ga~lINvaRG~~vd~~a 281 (342)
++|+|.... .+... ..+.|..+||.+-.--.+..+
T Consensus 73 f~alP~~~~------~~~v~~a~~aG~~VID~S~~fR~~~~~ 108 (343)
T PRK00436 73 FLALPHGVS------MDLAPQLLEAGVKVIDLSADFRLKDPE 108 (343)
T ss_pred EECCCcHHH------HHHHHHHHhCCCEEEECCcccCCCCch
Confidence 999995322 22222 235799999998554454433
No 367
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.86 E-value=0.2 Score=44.65 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=30.9
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~ 198 (342)
..|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence 5688999999999999999999985 5577 47777754
No 368
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.85 E-value=0.18 Score=50.23 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=58.8
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc--ccCCHH-HHhhcCCE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMD-EVLREADV 239 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~-~ll~~aDi 239 (342)
+..+++.|+|+|.+|+.+++.| ...|.+|+++|..++.. +.....+ .+..-.... ....|+ .-+.++|.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 4568899999999999999998 68899999999887532 2211110 000000000 111222 23468999
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINv 271 (342)
|+++.+... .+++-....+.+.+..+++-+
T Consensus 301 vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 301 FIALTNDDE--ANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred EEECCCCcH--HHHHHHHHHHHhCCCeEEEEE
Confidence 998887543 334434444555555555543
No 369
>PRK04148 hypothetical protein; Provisional
Probab=93.84 E-value=0.19 Score=41.95 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
.++++.+||+| -|..+|..| ...|.+|++.|.++..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~a 51 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKA 51 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHH
Confidence 46789999999 899999998 5789999999998864
No 370
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.80 E-value=0.14 Score=52.92 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=56.2
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC---HHH-HhhcCCEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDE-VLREADVIS 241 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~-ll~~aDiV~ 241 (342)
..+-|+|+|++|+.+|+.| +..|.+|++.|.+++.. +...+ .+...... ...+ +++ -++++|.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~-~~~~~--------~g~~~i~G-D~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRV-DELRE--------RGIRAVLG-NAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHH-HHHHH--------CCCeEEEc-CCCCHHHHHhcCccccCEEE
Confidence 5689999999999999998 68899999999887542 22111 11111111 1122 222 146899999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEE
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILV 269 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lI 269 (342)
++.+.++++..++-.- ..+.+...+|
T Consensus 487 v~~~~~~~~~~iv~~~--~~~~~~~~ii 512 (558)
T PRK10669 487 LTIPNGYEAGEIVASA--REKRPDIEII 512 (558)
T ss_pred EEcCChHHHHHHHHHH--HHHCCCCeEE
Confidence 9988766665554432 3334455554
No 371
>PRK05086 malate dehydrogenase; Provisional
Probab=93.80 E-value=0.26 Score=47.08 Aligned_cols=101 Identities=24% Similarity=0.211 Sum_probs=58.4
Q ss_pred CeEEEEec-CHHHHHHHHHHHh--cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc--cCCHHHHhhcCCEE
Q 019387 166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLREADVI 240 (342)
Q Consensus 166 ktvgIvG~-G~IG~~vA~~l~~--afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~ll~~aDiV 240 (342)
++|+|||. |.||+.+|..++. .++.++..+|+.+... .. . ..+.... ....... ..++.+.++++|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~--g~--a--lDl~~~~-~~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTP--GV--A--VDLSHIP-TAVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCc--ce--e--hhhhcCC-CCceEEEeCCCCHHHHcCCCCEE
Confidence 47999999 9999999987633 3455788999764321 00 0 0011101 0011111 34666778999999
Q ss_pred EEcCCCCcccccc-----------cCHHHHhc---CCCCcEEEEcCCC
Q 019387 241 SLHPVLDKTTYHL-----------INKERLAT---MKKEAILVNCSRG 274 (342)
Q Consensus 241 ~l~~pl~~~t~~l-----------i~~~~l~~---mk~ga~lINvaRG 274 (342)
++|.-. +...+. +-.+..+. -.+.+++++++-.
T Consensus 74 IitaG~-~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 74 LISAGV-ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred EEcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 998754 222221 12233333 3567899998653
No 372
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=93.75 E-value=2.7 Score=41.55 Aligned_cols=107 Identities=20% Similarity=0.305 Sum_probs=65.1
Q ss_pred ccCCCeEEEEec-----C---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH
Q 019387 162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (342)
Q Consensus 162 ~L~gktvgIvG~-----G---~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 233 (342)
.+.|++|+|+|- | ++.++++..+ ..||++|.+..|..-...+...+.........+ ..+....++++.
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea 259 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA 259 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 478999999985 5 6678888886 579999999887632111111110000011111 123345799999
Q ss_pred hhcCCEEEEcCCC-----C---------c-----------------ccccccCHHHHhcCCCC-cEEEEcC
Q 019387 234 LREADVISLHPVL-----D---------K-----------------TTYHLINKERLATMKKE-AILVNCS 272 (342)
Q Consensus 234 l~~aDiV~l~~pl-----~---------~-----------------~t~~li~~~~l~~mk~g-a~lINva 272 (342)
++++|+|..-.-. . + -...-++.+.++.++++ ++|.-+.
T Consensus 260 v~~aDvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcL 330 (395)
T PRK07200 260 FKDADIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCL 330 (395)
T ss_pred hCCCCEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCC
Confidence 9999999765311 0 0 12234577788888875 7777664
No 373
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.73 E-value=0.31 Score=45.68 Aligned_cols=105 Identities=13% Similarity=0.175 Sum_probs=62.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
++++.|+|.|..|++++..| ...|+ +|.+++|..++ .+...+.+ + ..+ ...+. ...+|+|+.|
T Consensus 122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~-a~~la~~~-------~---~~~--~~~~~--~~~~dlvINa 185 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKT-GKALAELY-------G---YEW--RPDLG--GIEADILVNV 185 (272)
T ss_pred CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH-HHHHHHHh-------C---Ccc--hhhcc--cccCCEEEEC
Confidence 56899999999999999987 56787 59999998753 23222111 0 000 00111 2458999999
Q ss_pred CCCCccc-----ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 244 PVLDKTT-----YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 244 ~pl~~~t-----~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
.|..-.. .-.++. +.++++.+++++.-.+ .++.=|.+|-+.|
T Consensus 186 Tp~Gm~~~~~~~~~pi~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 232 (272)
T PRK12550 186 TPIGMAGGPEADKLAFPE---AEIDAASVVFDVVALP-AETPLIRYARARG 232 (272)
T ss_pred CccccCCCCccccCCCCH---HHcCCCCEEEEeecCC-ccCHHHHHHHHCc
Confidence 9953211 112333 3466777888876655 2344344444444
No 374
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=93.73 E-value=0.3 Score=41.42 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=51.6
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
..|++|++||+= +++++.| +.-+.++.++|+++...... .... ....-++++++||+|++
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l-~~~~~~v~v~d~~~~~~~~~---------------~~~~-~~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKL-KERGAEVRVFDLNPDNIGEE---------------PGDV-PDEDAEEILPWADVVII 68 (147)
T ss_dssp TTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--SS---------------CT-E-EGGGHHHHGGG-SEEEE
T ss_pred cCCCEEEEEcCc---HHHHHHH-hcCCCCEEEEECCCCCCCCC---------------CCcC-CHHHHHHHHccCCEEEE
Confidence 468999999961 2467776 56789999999998542110 0001 22466889999999976
Q ss_pred cCCCCcccccccC---HHHHhcCCCCcEEEEcC
Q 019387 243 HPVLDKTTYHLIN---KERLATMKKEAILVNCS 272 (342)
Q Consensus 243 ~~pl~~~t~~li~---~~~l~~mk~ga~lINva 272 (342)
.-. -++| .+.|+..++++.++=+|
T Consensus 69 TGs------TlvN~Ti~~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 69 TGS------TLVNGTIDDILELARNAREVILYG 95 (147)
T ss_dssp ECH------HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred Eee------eeecCCHHHHHHhCccCCeEEEEe
Confidence 532 2343 34666666666665554
No 375
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.61 E-value=0.19 Score=50.63 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=67.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.||+|+|+|+|.-|.++|+.| +. |++|+++|....... .. ... . .. . +....+ .+.+.++|+|+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~-~~-~~~----~--~~-~--~~~~~~-~~~~~~~d~vV~S 70 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRD-IF-EEL----Y--SK-N--AIAALS-DSRWQNLDKIVLS 70 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchH-HH-Hhh----h--cC-c--eeccCC-hhHhhCCCEEEEC
Confidence 488999999999999999998 45 999999995533211 10 000 0 00 0 001112 3456789999877
Q ss_pred CCCCcc----------cccccCHHHH--hcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 019387 244 PVLDKT----------TYHLINKERL--ATMKK-EAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 244 ~pl~~~----------t~~li~~~~l--~~mk~-ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
.--.+. ...++++-.| ..+++ ..+=|-=+-|..-...-|.+.|+.
T Consensus 71 PgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 71 PGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred CCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 533322 1234554433 33332 355566678998888878888875
No 376
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.58 E-value=0.23 Score=47.00 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=55.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
.|+++.|+|.|.||...++. ++.+|++ |.+.|...+. .+... .+ .. + ..-++.-...|+|+-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~-ak~~G~~~v~~~~~~~~r-l~~a~-~~-------~~----i---~~~~~~~~g~Dvvid 206 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARL-TKAAGGSPPAVWETNPRR-RDGAT-GY-------EV----L---DPEKDPRRDYRAIYD 206 (308)
T ss_pred CCCcEEEECCCHHHHHHHHH-HHHcCCceEEEeCCCHHH-HHhhh-hc-------cc----c---ChhhccCCCCCEEEE
Confidence 47789999999999999998 5899998 4556665432 22110 00 00 0 000111235799998
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|.... . . -...++.++++..++.+|-
T Consensus 207 ~~G~~-~---~-~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 207 ASGDP-S---L-IDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CCCCH-H---H-HHHHHHhhhcCcEEEEEee
Confidence 87631 1 1 1456788999999998763
No 377
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.57 E-value=0.17 Score=52.53 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=34.1
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~ 200 (342)
....|+|||||-|..|+.+++. ++.+|.+|+++|+.+.
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~a-A~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQA-ASQMGIKVKVLDPLED 56 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCCC
Confidence 4778999999999999999998 4789999999998764
No 378
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.51 E-value=0.16 Score=52.90 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=59.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC---HHHH-hhcCCEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI 240 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~l-l~~aDiV 240 (342)
...+.|+|+|++|+.+++.| +..|.++++.|.+++. .+... +.+.... +-..++ |+++ +.+||.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~-v~~~~--------~~g~~v~-~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISA-VNLMR--------KYGYKVY-YGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHH-HHHHH--------hCCCeEE-EeeCCCHHHHHhcCCccCCEE
Confidence 35799999999999999997 6889999999988754 22211 1121111 111122 2222 5689999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
+++.+..+.+..++ ...+++.|...+|--+|
T Consensus 469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence 99998755554443 23444555655554434
No 379
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.50 E-value=0.33 Score=46.27 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=46.3
Q ss_pred CeEEEEecCHHHHH-HHHHHHhcCC--cEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCE
Q 019387 166 QTVGVIGAGRIGSA-YARMMVEGFK--MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV 239 (342)
Q Consensus 166 ktvgIvG~G~IG~~-vA~~l~~afg--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDi 239 (342)
.+|||||+|.+++. .+..+ +..+ +.+. ++|++++. .+.+.+.| +.. ..+.+++++++. -|+
T Consensus 4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~iD~ 70 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEF-------GIA----KAYTDLEELLADPDIDA 70 (342)
T ss_pred eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence 48999999988754 66665 4554 4544 57888754 33333333 111 245799999986 489
Q ss_pred EEEcCCCCc
Q 019387 240 ISLHPVLDK 248 (342)
Q Consensus 240 V~l~~pl~~ 248 (342)
|++|.|..-
T Consensus 71 V~Iatp~~~ 79 (342)
T COG0673 71 VYIATPNAL 79 (342)
T ss_pred EEEcCCChh
Confidence 999999543
No 380
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.50 E-value=0.23 Score=47.22 Aligned_cols=96 Identities=22% Similarity=0.188 Sum_probs=59.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccC--CHHHHhh--cC
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRAS--SMDEVLR--EA 237 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~l~~ll~--~a 237 (342)
.|++|.|+|.|.+|..+++. ++.+|++ |++.++..+.. +. ...+ +.... ...... .+.++.. ..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~-ak~~G~~~vi~~~~~~~~~-~~-~~~~-------ga~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALML-ARALGAEDVIGVDPSPERL-EL-AKAL-------GADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-HH-HHHh-------CCCEEEcCCcchHHHHHHHhCCCCC
Confidence 38899999999999999998 4899999 99888776542 11 1111 11000 000011 1223332 47
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
|+|+-|.... . .....++.++++..++.++..
T Consensus 233 d~vid~~g~~-~----~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 233 DVAIECSGNT-A----ARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred CEEEECCCCH-H----HHHHHHHHhhcCCEEEEEcCC
Confidence 8998876531 1 123457788888888887653
No 381
>PRK07877 hypothetical protein; Provisional
Probab=93.45 E-value=0.3 Score=51.91 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=59.3
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchh-----HH--------HHHHhhhhhhhhc-cCCCCccc
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQAT-----RL--------EKFVTAYGQFLKA-NGEQPVTW 224 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~-----~~--------~~~~~~~~~~~~~-~~~~~~~~ 224 (342)
..|.+++|+|+|+| +|..+|..|+ ..|. ++..+|...-+ +. ....+.....+.. ........
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 56899999999999 9999999986 4553 66666643210 00 0000000000000 00111100
Q ss_pred -c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387 225 -K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (342)
Q Consensus 225 -~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~ 261 (342)
. ...++++++.++|+|+-|+. +-+++.++|+...+.
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 0 12468889999999999996 678999999876665
No 382
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.44 E-value=0.43 Score=45.42 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=58.7
Q ss_pred CCeEEEEec-CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-----hcC
Q 019387 165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA 237 (342)
Q Consensus 165 gktvgIvG~-G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-----~~a 237 (342)
|++|.|.|. |.+|+.+++. ++.+|+ +|++.+.+.+.. +.....+ +....-.....++.+.+ ...
T Consensus 155 ~~~VlI~ga~g~vG~~aiql-Ak~~G~~~Vi~~~~s~~~~-~~~~~~l-------Ga~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQI-GRLLGCSRVVGICGSDEKC-QLLKSEL-------GFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred CCEEEEECCCcHHHHHHHHH-HHHcCCCEEEEEcCCHHHH-HHHHHhc-------CCcEEEECCCCCHHHHHHHHCCCCc
Confidence 489999998 9999999998 589999 899887765432 1111101 11111000112333322 247
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|+|+-++.. + .+ ...++.++++..+|.++.
T Consensus 226 d~vid~~g~-~----~~-~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 226 DVYFDNVGG-E----IS-DTVISQMNENSHIILCGQ 255 (345)
T ss_pred eEEEECCCc-H----HH-HHHHHHhccCCEEEEEee
Confidence 888887752 1 12 567888999999998863
No 383
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.43 E-value=0.35 Score=46.90 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=57.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc-cCCH-H---HHhh-c
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSM-D---EVLR-E 236 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l-~---~ll~-~ 236 (342)
.|++|.|.|.|.+|+.+++. ++..|+ +|++.+..+++... ...+ +... .+.. ..++ + ++.. .
T Consensus 191 ~g~~VlV~G~G~vG~~a~~l-ak~~G~~~Vi~~~~~~~r~~~--a~~~-------Ga~~-~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLG-AVAAGASQVVAVDLNEDKLAL--AREL-------GATA-TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCcEEEEcCCHHHHHH--HHHc-------CCce-EeCCCchhHHHHHHHHhCCC
Confidence 47899999999999999998 589999 68888877654311 1111 1110 0100 0122 2 2211 4
Q ss_pred CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
.|+|+-|.... + .-...++.++++..++.++-
T Consensus 260 ~d~vid~~G~~-~----~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 260 VDYAFEMAGSV-P----ALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCEEEECCCCh-H----HHHHHHHHHhcCCEEEEEcc
Confidence 79998887521 1 12345777888988888763
No 384
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.43 E-value=0.35 Score=48.35 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=69.8
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
+.++++.|+|.|.+|.++|+.| ...|.+|.++|..+........+.. ..+ ..+.....-+..+.++|+|+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~l~~~-----~~g---i~~~~g~~~~~~~~~~d~vv~ 73 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQIGKM-----FDG---LVFYTGRLKDALDNGFDILAL 73 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHHHhhc-----cCC---cEEEeCCCCHHHHhCCCEEEE
Confidence 5689999999999999999997 6889999999976543211101000 001 111111112344568999987
Q ss_pred cCCCCccc----------ccccCHH-HHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 243 HPVLDKTT----------YHLINKE-RLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 243 ~~pl~~~t----------~~li~~~-~l~~-mk---~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
..-..+.+ ..++++. .+.. ++ ...+-|-=+-|..-...=+...|+.
T Consensus 74 spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 74 SPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 65443322 1233332 3223 32 2456666678988888877788865
No 385
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.36 E-value=0.72 Score=43.98 Aligned_cols=124 Identities=19% Similarity=0.343 Sum_probs=63.8
Q ss_pred CeEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCch-hHHHHH-HhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQA-TRLEKF-VTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 166 ktvgIvG~-G~IG~~vA~~l~~afg--~~V~~~d~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+|+|+|. |.+|..+|..|+ ..| .+|+.+|+... ...... .+.+.... ..+. ........+.+ .+.+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~-~~~~-~~~i~~~~d~~-~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDALA-AAGI-DAEIKISSDLS-DVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhchh-ccCC-CcEEEECCCHH-HhCCCCEE
Confidence 47999998 999999999875 334 36999998431 111110 00000000 0010 01122223445 48999999
Q ss_pred EEcCCCCcc---cc-cc-------cC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH----HHcCCceEEE
Q 019387 241 SLHPVLDKT---TY-HL-------IN--KERLATMKKEAILVNCSRGPVIDEVALVEH----LKQNPMFRVG 295 (342)
Q Consensus 241 ~l~~pl~~~---t~-~l-------i~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~a----L~~g~i~~aa 295 (342)
+++...... ++ .+ +. ...+....+.+++|+++ +.+|.-..+-. +...++.|.+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g 146 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG 146 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence 999753221 21 11 11 12234444677777776 55554443321 2334555553
No 386
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=93.35 E-value=0.13 Score=49.65 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=30.3
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
||||||-|..|+.+++.+ +.+|.+|+++|+.+..
T Consensus 1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~~ 34 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDANS 34 (352)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCCC
Confidence 599999999999999984 7899999999987643
No 387
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.33 E-value=0.38 Score=43.21 Aligned_cols=36 Identities=25% Similarity=0.187 Sum_probs=29.7
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (342)
Q Consensus 163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~ 199 (342)
+.++++.|.|- |.||+.+|+.|+ ..|.+|+...++.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~-~~g~~v~~~~~~~ 39 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLA-ADGFAVAVNYAGS 39 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCCC
Confidence 56899999995 999999999984 6799988766543
No 388
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.32 E-value=1 Score=42.48 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=69.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
|++++|||--.=-..+++.| ...|++|..|.-..... + ..++......++.++++|+|++-+
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~~---------------~--~~~~~~~~~~~~~~~~~~~~i~p~ 62 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLED---------------G--FTGAVKCELLELDLTTLDVVILPV 62 (287)
T ss_pred CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEecccccc---------------c--cccceeecchhhhhccCCEEEECC
Confidence 68999999988888899997 57899877664321100 0 012223345566689999999999
Q ss_pred CCCccc----------ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387 245 VLDKTT----------YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (342)
Q Consensus 245 pl~~~t----------~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~ 292 (342)
|.+.+. +-.++++.++.|+++++ +-+|.+. .++-++.++..|.
T Consensus 63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G~~~----~~l~~~a~~~gi~ 115 (287)
T TIGR02853 63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVGISN----PYLEQLAADAGVK 115 (287)
T ss_pred ccccCCceEecccccCCccccHHHHHhcCCCCE-EEEecCC----HHHHHHHHHCCCe
Confidence 976652 22356889999997654 5555444 5566566655554
No 389
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=93.29 E-value=0.5 Score=47.47 Aligned_cols=111 Identities=20% Similarity=0.164 Sum_probs=72.5
Q ss_pred ccCCCeEEEEec----CHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh
Q 019387 162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (342)
Q Consensus 162 ~L~gktvgIvG~----G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 235 (342)
-+.-++|.|||. |++|..+.+.| +..|+ +|+.++|..... .+...+.+++++-.
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~ 63 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPD 63 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCC
Confidence 356689999999 88999999997 56565 788888764321 12334578999888
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCC-CcEEEEcCCCcc-----cCHHHHHHHHHcCCceEEE
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKK-EAILVNCSRGPV-----IDEVALVEHLKQNPMFRVG 295 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~-ga~lINvaRG~~-----vd~~aL~~aL~~g~i~~aa 295 (342)
.-|++++++|. +.+...+.+ ..+ .+- .++++.-+-++. -.++.|.+..+++.+.-.+
T Consensus 64 ~~Dlavi~vp~-~~~~~~l~e-~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 64 PVDLAVIVVPA-KYVPQVVEE-CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred CCCEEEEecCH-HHHHHHHHH-HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 88999999994 333444433 222 333 444554444332 2357788888777666444
No 390
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.12 E-value=0.39 Score=46.49 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=57.9
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l 242 (342)
.|++|.|.|.|.+|..+++. ++.+|++|++.+...+.+.+. ...+ +.... .......+.++....|+++-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~vi~~~~~~~~~~~~-~~~~-------Ga~~vi~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKI-GKAFGLKVTVISSSSNKEDEA-INRL-------GADSFLVSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCcchhhhH-HHhC-------CCcEEEcCCCHHHHHhhcCCCCEEEE
Confidence 58899999999999999998 589999998877665432211 1111 11000 00000123333345788887
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
+... +. .+ ...++.+++|..++.++.
T Consensus 254 ~~g~-~~---~~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 254 TVSA-VH---AL-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CCCC-HH---HH-HHHHHHhcCCcEEEEeCC
Confidence 7642 11 11 335777888888888764
No 391
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.10 E-value=0.98 Score=45.16 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=67.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc-cCCHHHHhhcCCEEEEc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH 243 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ll~~aDiV~l~ 243 (342)
+-+++|+|+|.+|.++|+.| ...|.+|.++|........... .... ....+.. ..+ .+.+.++|+|+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~l-------~~~~-~g~~~~~~~~~-~~~~~~~d~vV~s 75 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDTL-------AREF-PDVELRCGGFD-CELLVQASEIIIS 75 (448)
T ss_pred CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHHH-------Hhhc-CCcEEEeCCCC-hHHhcCCCEEEEC
Confidence 45899999999999999997 6899999999976532111101 0000 0011110 112 3345679988776
Q ss_pred CCCCccc----------ccccCHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 244 PVLDKTT----------YHLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 244 ~pl~~~t----------~~li~~~-~l-~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
.-..+.+ ..++++. .+ ..++...+-|-=+.|..-...-+...|+.
T Consensus 76 p~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 76 PGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred CCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 4322221 1234433 22 23344456677779998888877788865
No 392
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.10 E-value=0.28 Score=46.92 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=59.7
Q ss_pred eEEEEec-CHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc---cCCHHHHhhcCCEEE
Q 019387 167 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS 241 (342)
Q Consensus 167 tvgIvG~-G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~ll~~aDiV~ 241 (342)
+|+|+|. |+||..+|-.|+. .+.-++..+|..+ ...+. ..+.. ......... .+++.+.+++||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a------~DL~~-~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVA------ADLSH-IPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEE------chhhc-CCcCceEEEecCCCchHHHcCCCCEEE
Confidence 5899999 9999999987642 3445899999876 21110 11111 111111221 123567889999999
Q ss_pred EcCCCCc---cc--------ccccC--HHHHhcCCCCcEEEEcCCCcccCH
Q 019387 242 LHPVLDK---TT--------YHLIN--KERLATMKKEAILVNCSRGPVIDE 279 (342)
Q Consensus 242 l~~pl~~---~t--------~~li~--~~~l~~mk~ga~lINvaRG~~vd~ 279 (342)
++.-... ++ ..++. ...+..-.|.+++|+++- .+|.
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 8865321 11 12221 124444568899999965 4553
No 393
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.97 E-value=0.4 Score=43.18 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=33.1
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
.+.++++.|.|- |.||+.+++.|+ ..|.+|++.++++..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~-~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA-AEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence 367899999996 899999999984 679999999988753
No 394
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.91 E-value=0.28 Score=44.19 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=53.4
Q ss_pred EEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCCEEEEcC
Q 019387 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 168 vgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
|.|+|. |.+|+.+++.|. .-+.+|.+.-|.+.+....... ..+..- ..+....+|.++++.+|.|++++
T Consensus 1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~l~-------~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~ 72 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQLQ-------ALGAEVVEADYDDPESLVAALKGVDAVFSVT 72 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHHHH-------HTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhhhh-------cccceEeecccCCHHHHHHHHcCCceEEeec
Confidence 678885 999999999985 5788999887776432221111 111111 12223467888999999999999
Q ss_pred CCCc-----ccccccCHHHHh
Q 019387 245 VLDK-----TTYHLINKERLA 260 (342)
Q Consensus 245 pl~~-----~t~~li~~~~l~ 260 (342)
|... ....++++..=.
T Consensus 73 ~~~~~~~~~~~~~li~Aa~~a 93 (233)
T PF05368_consen 73 PPSHPSELEQQKNLIDAAKAA 93 (233)
T ss_dssp SCSCCCHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhHHHhhhcc
Confidence 8542 234555544433
No 395
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=92.88 E-value=0.27 Score=48.56 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=59.7
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhccCCCCcccc
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKANGEQPVTWK 225 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~ 225 (342)
..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|...-.. +.. + .+.....+.. ..+...+.
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~-~np~v~i~ 115 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVE-INPLVNVR 115 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHH-hCCCcEEE
Confidence 5688999999999999999999985 5566 677787543110 000 0 0000000000 00111110
Q ss_pred ------ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387 226 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (342)
Q Consensus 226 ------~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk 263 (342)
...+..++++++|+|+.|.. +.+++.++|+...+.=+
T Consensus 116 ~~~~~i~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~ 158 (392)
T PRK07878 116 LHEFRLDPSNAVELFSQYDLILDGTD-NFATRYLVNDAAVLAGK 158 (392)
T ss_pred EEeccCChhHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 11235678999999998874 67888888877665433
No 396
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.87 E-value=0.51 Score=45.46 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=58.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCC----HHHHhh--
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASS----MDEVLR-- 235 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----l~~ll~-- 235 (342)
.|++|.|.|.|.+|+.+++. ++.+|++ |++.++..+..... ..+ +... .+. ...+ +.++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~-ak~~G~~~Vi~~~~~~~~~~~~--~~~-------Ga~~-~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAG-AALAGASKIIAVDIDDRKLEWA--REF-------GATH-TVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHHHHH--HHc-------CCce-EEcCCCcCHHHHHHHHhCCC
Confidence 48899999999999999998 5899995 88888776532111 111 1110 000 0112 222222
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
..|+|+-|... +.+ + ...+..+++|..+|.++-
T Consensus 245 g~d~vid~~g~-~~~---~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVIDAVGR-PET---Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEECCCC-HHH---H-HHHHHHhccCCEEEEECC
Confidence 47899887752 221 2 335778899999998874
No 397
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=92.82 E-value=0.76 Score=42.61 Aligned_cols=130 Identities=21% Similarity=0.181 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC----Cc-------E
Q 019387 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N 191 (342)
Q Consensus 123 vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af----g~-------~ 191 (342)
+|=.+++-+++.+|-. |..|...++.|+|.|.-|-.+|+.|. .. |. +
T Consensus 4 TaaV~lAgll~Al~~~---------------------g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~~ 61 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT---------------------GKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARKR 61 (255)
T ss_dssp HHHHHHHHHHHHHHHH---------------------TS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHTT
T ss_pred hHHHHHHHHHHHHHHh---------------------CCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhcc
Confidence 5556777777777633 45689999999999999999999874 44 66 5
Q ss_pred EEEEcCCch-----hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC--CEEEEcCCCCcccccccCHHHHhcCCC
Q 019387 192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMKK 264 (342)
Q Consensus 192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a--DiV~l~~pl~~~t~~li~~~~l~~mk~ 264 (342)
++.+|++.- .....+...|. .+..... ...+|.|+++.. |+++=+-- ..++|+++.++.|.+
T Consensus 62 i~lvD~~Gll~~~r~~l~~~~~~~a----~~~~~~~---~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma~ 130 (255)
T PF03949_consen 62 IWLVDSKGLLTDDREDLNPHKKPFA----RKTNPEK---DWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMAK 130 (255)
T ss_dssp EEEEETTEEEBTTTSSHSHHHHHHH----BSSSTTT-----SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCHH
T ss_pred EEEEeccceEeccCccCChhhhhhh----ccCcccc---cccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHhc
Confidence 888887631 11222222221 1111111 125999999999 99986632 468999999999987
Q ss_pred ---CcEEEEcCCCcc---cCHHHHHHH
Q 019387 265 ---EAILVNCSRGPV---IDEVALVEH 285 (342)
Q Consensus 265 ---ga~lINvaRG~~---vd~~aL~~a 285 (342)
..++.=.|.-.- +..++.+++
T Consensus 131 ~~erPIIF~LSNPt~~aE~~peda~~~ 157 (255)
T PF03949_consen 131 HNERPIIFPLSNPTPKAECTPEDAYEW 157 (255)
T ss_dssp HSSSEEEEE-SSSCGGSSS-HHHHHHT
T ss_pred cCCCCEEEECCCCCCcccCCHHHHHhh
Confidence 888888877665 344444443
No 398
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.79 E-value=0.58 Score=45.36 Aligned_cols=95 Identities=23% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccC-----CHHHHh--hc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-----SMDEVL--RE 236 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~ll--~~ 236 (342)
+.+|.|+|.|.||...+.. ++.+|+ +|++.|+++... +...+..+ ......... ...++- ..
T Consensus 169 ~~~V~V~GaGpIGLla~~~-a~~~Ga~~Viv~d~~~~Rl-~~A~~~~g--------~~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIAL-AKLLGASVVIVVDRSPERL-ELAKEAGG--------ADVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCEEEEECCCHHHHHHHHH-HHHcCCceEEEeCCCHHHH-HHHHHhCC--------CeEeecCccccHHHHHHHHhCCCC
Confidence 3399999999999999887 488997 677778877543 22211110 110000001 111232 24
Q ss_pred CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
+|+++-|... +. .-...++..++|..++.++=.
T Consensus 239 ~D~vie~~G~-~~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVGS-PP----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCCC-HH----HHHHHHHHhcCCCEEEEEecc
Confidence 9999999872 22 224577888888888887643
No 399
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=92.79 E-value=0.51 Score=45.75 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=65.5
Q ss_pred CeEEEEecCHHHHHHHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~af-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.+|||||. .+|+.-++.+.+.- ++++.+ +|+..+ +.+++-+.| + +..+.++++++.+.|+++++
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~e-rA~~~A~~~-------g-----i~~y~~~eell~d~Di~~V~ 69 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSE-RSRALAHRL-------G-----VPLYCEVEELPDDIDIACVV 69 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHH-HHHHHHHHh-------C-----CCccCCHHHHhcCCCEEEEE
Confidence 58999999 68998888763322 577775 787664 333333333 1 22458999999999999999
Q ss_pred CCCC-c-ccccccCHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHcCCceEE
Q 019387 244 PVLD-K-TTYHLINKERLATMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMFRV 294 (342)
Q Consensus 244 ~pl~-~-~t~~li~~~~l~~mk~ga-~lINvaRG~~vd~~aL~~aL~~g~i~~a 294 (342)
+|.+ + .++.-+ ..+.++.|. +|+-===. .-+-++|+++.++..+...
T Consensus 70 ipt~~P~~~H~e~---a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 70 VRSAIVGGQGSAL---ARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred eCCCCCCccHHHH---HHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEE
Confidence 8742 2 232222 333444553 33321111 3455667777666555433
No 400
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.73 E-value=0.45 Score=44.61 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=32.9
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~ 200 (342)
..+.||++.|.|- |.||..+|+.|+ ..|++|+.+++...
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~ 81 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH 81 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence 4678999999984 889999999985 67999999887653
No 401
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.72 E-value=0.8 Score=45.52 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=68.9
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-ccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
++.|+|+|.+|.++|+.| +..|.+|.++|.......+.... ... ..+. .+..-.+ .+.+.++|+|+...-
T Consensus 1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~~gi---~~~~g~~-~~~~~~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLNEGS---VLHTGLH-LEDLNNADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhccCc---EEEecCc-hHHhccCCEEEECCC
Confidence 478999999999999997 68999999999765432221000 000 0111 1111122 345678998877643
Q ss_pred CCccc----------ccccCHHHH--hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387 246 LDKTT----------YHLINKERL--ATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 246 l~~~t----------~~li~~~~l--~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~ 290 (342)
..+.+ ..++++..| ..++...+-|.=+.|..-...=+...|+...
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 32221 123443322 3334446777778999888888888887643
No 402
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.68 E-value=0.58 Score=45.09 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=58.3
Q ss_pred CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc--cCCHHHHhh-----
Q 019387 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR----- 235 (342)
Q Consensus 164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~ll~----- 235 (342)
.|.+|.|.|. |.+|+.+++. ++.+|++|++.+.+.++. +.....+ +... .+.. ..++.+.+.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiql-Ak~~G~~Vi~~~~~~~k~-~~~~~~l-------Ga~~-vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQL-AKLHGCYVVGSAGSSQKV-DLLKNKL-------GFDE-AFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEcCCHHHH-HHHHHhc-------CCCE-EEECCCcccHHHHHHHHCCC
Confidence 4889999999 9999999998 589999999887765432 1110011 1111 1111 113433332
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
..|+++-|+.. . .-...++.+++|..++.++
T Consensus 228 gvD~v~d~vG~--~----~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVGG--D----MLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCCH--H----HHHHHHHHhccCCEEEEEC
Confidence 36888877642 1 1245678888888888776
No 403
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.66 E-value=0.38 Score=45.88 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=42.9
Q ss_pred eEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCC----CCccccccCCHHHHhhcCCEEE
Q 019387 167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE----QPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
+|+|||.|.||..+|..|+. .+.-++..+|...+.......+ +..... ...... ..+ -+.+++||+|+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-----L~~~~~~~~~~~~~i~-~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-----FHHATALTYSTNTKIR-AGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-----HHhhhccCCCCCEEEE-ECC-HHHhCCCCEEE
Confidence 58999999999999987642 3444899999875432111111 111010 011111 233 45678999999
Q ss_pred EcCC
Q 019387 242 LHPV 245 (342)
Q Consensus 242 l~~p 245 (342)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 8854
No 404
>PRK06128 oxidoreductase; Provisional
Probab=92.64 E-value=0.5 Score=44.41 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=30.0
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~ 198 (342)
.+.||++.|.|- |.||+.+|+.|+ ..|++|+...+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence 378999999996 899999999985 679999876543
No 405
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=92.61 E-value=0.58 Score=45.71 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=32.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
.|++|.|.|.|.+|..+++. ++++|++|++.+...+.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~~ 214 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSEK 214 (375)
T ss_pred CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChHH
Confidence 48899999999999999998 58999999988876543
No 406
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.56 E-value=0.64 Score=43.19 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccC---CHHHHh--hcC
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEVL--REA 237 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~ll--~~a 237 (342)
.|++|.|+|.|.||...++. ++.+|++ |++.++.+++. +. ...+ +... .+.... .+.++. ...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~-ak~~G~~~Vi~~~~~~~r~-~~-a~~~-------Ga~~-~i~~~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAA-AAAAGAARVVAADPSPDRR-EL-ALSF-------GATA-LAEPEVLAERQGGLQNGRGV 188 (280)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-HH-HHHc-------CCcE-ecCchhhHHHHHHHhCCCCC
Confidence 58899999999999999998 5899997 88887765432 11 1111 1100 000000 111221 247
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|+++-+.... . . -...++.++++..++.++-
T Consensus 189 d~vid~~G~~-~---~-~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEFSGAT-A---A-VRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEECCCCh-H---H-HHHHHHHhcCCCEEEEecc
Confidence 9998876421 1 1 2345788899999998873
No 407
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=92.54 E-value=0.37 Score=46.07 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=49.0
Q ss_pred CeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
.+|+|+| -|-.|+++.++|..-=.+++.....+... . ..+.++.+.++|++++|+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~-----~~~~~~~~~~~DvvFlal 58 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------D-----AAARRELLNAADVAILCL 58 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------c-----ccCchhhhcCCCEEEECC
Confidence 4799999 79999999999843334465544322111 0 023345667899999999
Q ss_pred CCCcccccccCHHHHhcC-CCCcEEEEcC
Q 019387 245 VLDKTTYHLINKERLATM-KKEAILVNCS 272 (342)
Q Consensus 245 pl~~~t~~li~~~~l~~m-k~ga~lINva 272 (342)
|-. ...+..... +.|..+||.+
T Consensus 59 p~~------~s~~~~~~~~~~g~~VIDlS 81 (313)
T PRK11863 59 PDD------AAREAVALIDNPATRVIDAS 81 (313)
T ss_pred CHH------HHHHHHHHHHhCCCEEEECC
Confidence 942 223333332 4688899887
No 408
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.53 E-value=0.13 Score=53.96 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=56.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH----HhhcCCEE
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREADVI 240 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----ll~~aDiV 240 (342)
...|-|+|+|++|+.+|+.| +..|.++++.|.+++.. +... +.+.. .-+-..++.+- =+.++|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~~~--------~~g~~-v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHI-ETLR--------KFGMK-VFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHH-HHHH--------hcCCe-EEEEeCCCHHHHHhcCCCcCCEE
Confidence 46899999999999999997 68899999999887542 2211 11211 11111122221 24589999
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEE
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVN 270 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lIN 270 (342)
+++.+.++.+..++ ...+.+.|...++-
T Consensus 469 vv~~~d~~~n~~i~--~~ar~~~p~~~iia 496 (621)
T PRK03562 469 INAIDDPQTSLQLV--ELVKEHFPHLQIIA 496 (621)
T ss_pred EEEeCCHHHHHHHH--HHHHHhCCCCeEEE
Confidence 99997655544333 23344445544443
No 409
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=92.53 E-value=9.9 Score=36.18 Aligned_cols=104 Identities=11% Similarity=0.097 Sum_probs=58.2
Q ss_pred ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.|++|+++|=+ ++.++.+..+ ..||++|.+..|..-...+...+....+....+ ..+....++ +.++++|+|
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~-~a~~~aDvv 218 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGA-AILGATMTVICPPGHFPDGQIVAEAQELAAKSG---GKLVLTSDI-EAIEGHDAI 218 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CEEEEEcCH-HHHCCCCEE
Confidence 3789999999974 6677888876 579999999887543222221111001111112 122233555 468999999
Q ss_pred EEcCCCC---c----c-----cccccCHHHHhcCCCCcEEEEc
Q 019387 241 SLHPVLD---K----T-----TYHLINKERLATMKKEAILVNC 271 (342)
Q Consensus 241 ~l~~pl~---~----~-----t~~li~~~~l~~mk~ga~lINv 271 (342)
..-.-.. + + ...-++++.++.+|+. +|.-+
T Consensus 219 y~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~ 260 (302)
T PRK14805 219 YTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHC 260 (302)
T ss_pred EeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECC
Confidence 7633110 0 0 1234566677766665 44433
No 410
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.44 E-value=0.61 Score=44.10 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHh-----hc
Q 019387 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVL-----RE 236 (342)
Q Consensus 164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll-----~~ 236 (342)
.|.+|.|.| -|.+|+.+++. ++.+|++|++.+++.+.. +. ...+ +.... ......++.+.+ ..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiql-Ak~~G~~Vi~~~~s~~~~-~~-~~~l-------Ga~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKV-AY-LKKL-------GFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHH-HHHcCCEEEEEeCCHHHH-HH-HHHc-------CCCEEEeccccccHHHHHHHhCCCC
Confidence 478999999 59999999998 589999999887765432 11 1111 11110 001111333322 23
Q ss_pred CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
.|+++-++.. + .+ ...++.++++..+|.++..
T Consensus 208 vdvv~d~~G~-~----~~-~~~~~~l~~~G~iv~~G~~ 239 (325)
T TIGR02825 208 YDCYFDNVGG-E----FS-NTVIGQMKKFGRIAICGAI 239 (325)
T ss_pred eEEEEECCCH-H----HH-HHHHHHhCcCcEEEEecch
Confidence 6888877652 1 12 5678889999999998753
No 411
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=92.34 E-value=0.79 Score=43.54 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=56.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---hcCCEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVI 240 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---~~aDiV 240 (342)
.|++|.|.|-|.+|+.+++. ++++|++|++.++..+.. +. ...+ +....-.....++.+.+ ...|++
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~-a~~~G~~vi~~~~~~~~~-~~-~~~~-------g~~~~i~~~~~~~~~~~~~~~~~d~v 232 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQY-AAKMGFRTVAISRGSDKA-DL-ARKL-------GAHHYIDTSKEDVAEALQELGGAKLI 232 (333)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHCCCeEEEEeCChHHH-HH-HHHc-------CCcEEecCCCccHHHHHHhcCCCCEE
Confidence 47899999999999999998 589999999988765432 11 1111 11000000111222222 346888
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
+-+.... -.-...+..++++..+++++-
T Consensus 233 i~~~g~~-----~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 233 LATAPNA-----KAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred EECCCch-----HHHHHHHHHcccCCEEEEEec
Confidence 8665311 122345777888888888764
No 412
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.24 E-value=0.42 Score=47.11 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=49.7
Q ss_pred cCCCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH
Q 019387 163 LKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (342)
Q Consensus 163 L~gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (342)
..|++|+|+|+ ..-+..+++.| ...|++|.+|||...... ..+....+++.+
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~~-----------------~~~~~~~~~~~~ 355 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKEDS-----------------FFNSRLERDLAT 355 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCchh-----------------hcCCeeeCCHHH
Confidence 46899999999 34567888987 688999999999854320 112335689999
Q ss_pred HhhcCCEEEEcCC
Q 019387 233 VLREADVISLHPV 245 (342)
Q Consensus 233 ll~~aDiV~l~~p 245 (342)
++++||.|++..-
T Consensus 356 ~~~~~~~~~~~~~ 368 (388)
T PRK15057 356 FKQQADVIISNRM 368 (388)
T ss_pred HHHhCCEEEEcCC
Confidence 9999999987753
No 413
>PRK15076 alpha-galactosidase; Provisional
Probab=92.21 E-value=0.55 Score=46.98 Aligned_cols=125 Identities=13% Similarity=0.093 Sum_probs=70.7
Q ss_pred CeEEEEecCHHHHHHHH--HHH--hcC-CcEEEEEcCCchhHH--HHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387 166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~--~l~--~af-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD 238 (342)
.+|+|||.|.+|...+- .++ +++ +.+|..||..++... ..... ...... .....+....++.+.+++||
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~---~~~~~~-~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVAR---KLAESL-GASAKITATTDRREALQGAD 77 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHH---HHHHhc-CCCeEEEEECCHHHHhCCCC
Confidence 47999999999955443 222 345 459999999875321 11111 111111 12233444568889999999
Q ss_pred EEEEcCCCCccc-c-----------ccc-----------------C-------HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 019387 239 VISLHPVLDKTT-Y-----------HLI-----------------N-------KERLATMKKEAILVNCSRGPVIDEVAL 282 (342)
Q Consensus 239 iV~l~~pl~~~t-~-----------~li-----------------~-------~~~l~~mk~ga~lINvaRG~~vd~~aL 282 (342)
||+.+.-..... . |++ + .+.+....|++.+||++-.--+-..++
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~ 157 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM 157 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence 998886543111 1 111 1 123444558999999987664444455
Q ss_pred HHHHHcCCceEEE
Q 019387 283 VEHLKQNPMFRVG 295 (342)
Q Consensus 283 ~~aL~~g~i~~aa 295 (342)
... ...++.|.+
T Consensus 158 ~~~-~~~rviG~c 169 (431)
T PRK15076 158 NRY-PGIKTVGLC 169 (431)
T ss_pred hcC-CCCCEEEEC
Confidence 422 333454444
No 414
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.20 E-value=0.72 Score=44.28 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=32.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
.|++|.|.|.|.||..+++. ++..|.+|++.+++++.
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~-a~~~G~~vi~~~~~~~~ 202 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQT-AKAMGAAVVAIDIDPEK 202 (349)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCeEEEEcCCHHH
Confidence 48899999999999999998 58999999998887654
No 415
>PLN00106 malate dehydrogenase
Probab=92.15 E-value=0.4 Score=46.09 Aligned_cols=105 Identities=24% Similarity=0.287 Sum_probs=60.1
Q ss_pred CCCeEEEEec-CHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC-Cc-cccccCCHHHHhhcCCE
Q 019387 164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PV-TWKRASSMDEVLREADV 239 (342)
Q Consensus 164 ~gktvgIvG~-G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~ll~~aDi 239 (342)
..++|+|+|. |+||..+|..|+. .+.-++..+|... ...+. .+ +...... .. .+...+++.+.+++||+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a-~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVA-AD-----VSHINTPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeE-ch-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence 3469999999 9999999998742 3444899999866 11100 00 1100000 11 11123456788999999
Q ss_pred EEEcCCC--Cc-cccc-cc--C----H---HHHhcCCCCcEEEEcCCCc
Q 019387 240 ISLHPVL--DK-TTYH-LI--N----K---ERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 240 V~l~~pl--~~-~t~~-li--~----~---~~l~~mk~ga~lINvaRG~ 275 (342)
|+++.-. .+ +++. ++ | + +.+....+.+++++++---
T Consensus 90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 9887543 21 1221 11 1 1 2344445788999987543
No 416
>PRK10206 putative oxidoreductase; Provisional
Probab=92.10 E-value=0.42 Score=46.25 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=43.1
Q ss_pred eEEEEecCHHHHH-HHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEE
Q 019387 167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (342)
Q Consensus 167 tvgIvG~G~IG~~-vA~~l~~a-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~ 241 (342)
++||||+|.|++. .+..+... -++++. ++|+.++.. .+.+.| + ....++++++++. +-|+|+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~----~~~~~~~~~ell~~~~iD~V~ 69 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------S----HIHFTSDLDEVLNDPDVKLVV 69 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence 7999999998864 34433222 267876 588875322 221111 1 1123578999996 569999
Q ss_pred EcCCCCc
Q 019387 242 LHPVLDK 248 (342)
Q Consensus 242 l~~pl~~ 248 (342)
+|+|...
T Consensus 70 I~tp~~~ 76 (344)
T PRK10206 70 VCTHADS 76 (344)
T ss_pred EeCCchH
Confidence 9999543
No 417
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=92.07 E-value=0.79 Score=43.64 Aligned_cols=95 Identities=17% Similarity=0.129 Sum_probs=58.3
Q ss_pred CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHh-----hc
Q 019387 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVL-----RE 236 (342)
Q Consensus 164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll-----~~ 236 (342)
.|++|.|.|. |.+|+.+++. ++.+|++|++.++..+..... .+.+ +.... ......++.+.+ ..
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiql-Ak~~G~~Vi~~~~~~~~~~~~-~~~l-------Ga~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQL-AKLKGCYVVGSAGSDEKVDLL-KNKL-------GFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHH-HHhc-------CCceeEEcCCcccHHHHHHHhCCCC
Confidence 4889999998 9999999998 589999999887765432111 0001 11110 000111333322 24
Q ss_pred CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
.|+++-++.. . .-.+.++.++++..++.++.
T Consensus 222 vd~v~d~~g~--~----~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 222 IDIYFDNVGG--K----MLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred cEEEEECCCH--H----HHHHHHHHhccCcEEEEecc
Confidence 6888877642 1 12466888889989988763
No 418
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=92.06 E-value=0.68 Score=44.06 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=59.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l 242 (342)
.|.++.|.|.|.+|+.+++. ++++|++|++.++..+..... ..+ +.... ........++.-...|+++.
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~-a~~~G~~v~~~~~~~~~~~~~--~~~-------g~~~vi~~~~~~~~~~~~~~~d~v~~ 238 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKF-AKALGAEVTAFSRSPSKKEDA--LKL-------GADEFIATKDPEAMKKAAGSLDLIID 238 (337)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEcCCHHHHHHH--HHc-------CCcEEecCcchhhhhhccCCceEEEE
Confidence 46799999999999999988 489999999988775432111 111 11000 00000111222356789998
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
|.+.. ......++.++++..+++++..
T Consensus 239 ~~g~~-----~~~~~~~~~l~~~G~~v~~g~~ 265 (337)
T cd05283 239 TVSAS-----HDLDPYLSLLKPGGTLVLVGAP 265 (337)
T ss_pred CCCCc-----chHHHHHHHhcCCCEEEEEecc
Confidence 87642 1235567888888888888643
No 419
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=92.06 E-value=0.38 Score=40.91 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=24.9
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL 197 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~ 197 (342)
+|||+|+|+||+.+++.+.+.-++++.+ +|+
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 7999999999999999864345788776 554
No 420
>PRK12742 oxidoreductase; Provisional
Probab=91.98 E-value=1.1 Score=40.00 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=29.4
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~ 198 (342)
+.||++.|.|- |.||+.+|+.| ...|++|+...+.
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~ 39 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG 39 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence 67899999995 89999999998 4779999876543
No 421
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.97 E-value=0.64 Score=42.92 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.3
Q ss_pred cCCCeEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCC
Q 019387 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 163 L~gktvgIvG~G---~IG~~vA~~l~~afg~~V~~~d~~ 198 (342)
+.||++.|.|-| .||+++|+.|+ .-|++|+..++.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence 679999999987 69999999985 579999887765
No 422
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=91.96 E-value=0.57 Score=44.72 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=50.1
Q ss_pred eEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 167 tvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
+|+|+|- |-.|.++.++|+.--.+++.....+... ...+.+++++++|++++|+|
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlalp 58 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCLP 58 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECCC
Confidence 6899985 8999999999864456677655322110 01245677789999999999
Q ss_pred CCcccccccCHHHHhcC-CCCcEEEEcC
Q 019387 246 LDKTTYHLINKERLATM-KKEAILVNCS 272 (342)
Q Consensus 246 l~~~t~~li~~~~l~~m-k~ga~lINva 272 (342)
-. .++ +..... +.|..+||.+
T Consensus 59 ~~-~s~-----~~~~~~~~~g~~VIDlS 80 (310)
T TIGR01851 59 DD-AAR-----EAVSLVDNPNTCIIDAS 80 (310)
T ss_pred HH-HHH-----HHHHHHHhCCCEEEECC
Confidence 43 222 222222 4688888887
No 423
>PLN02740 Alcohol dehydrogenase-like
Probab=91.93 E-value=0.8 Score=44.64 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~ 201 (342)
.|++|.|+|.|.||..+++. ++.+|+ +|++.++.++.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~-ak~~G~~~Vi~~~~~~~r 235 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEG-ARARGASKIIGVDINPEK 235 (381)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCCcEEEEcCChHH
Confidence 58899999999999999998 589999 69888877643
No 424
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.91 E-value=0.99 Score=43.16 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC----HHHHhh--c
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVLR--E 236 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~ll~--~ 236 (342)
.|++|.|.|.|.+|+.+++. ++..|+ +|++.+.+.+.. +. ...+ +....-.....+ +.++.. .
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~-a~~~G~~~v~~~~~~~~~~-~~-~~~~-------ga~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILA-LKAAGASKIIVSEPSEARR-EL-AEEL-------GATIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-HH-HHHh-------CCCEEECCCccCHHHHHHHHhCCCC
Confidence 47899999999999999998 589999 788888765432 11 1111 111000000112 223332 3
Q ss_pred CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
.|+++-+.... . .-...++.++++..++.++.
T Consensus 242 ~d~vid~~g~~-~----~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 242 VDVSFDCAGVQ-A----TLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCEEEECCCCH-H----HHHHHHHhccCCCEEEEEcc
Confidence 89999887521 1 12456778899999998864
No 425
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=91.83 E-value=2.1 Score=38.91 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=33.3
Q ss_pred eEEEEeCCCCchH-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEec
Q 019387 16 YRVVSTKPMPGTR-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ 69 (342)
Q Consensus 16 ~~vl~~~~~~~~~-~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~ 69 (342)
|+||+|++-+... +.+.|++.|.++...+.-+....+++....+...+|.++..
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifT 55 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVT 55 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEE
Confidence 5899999888744 44788999999877654332222233333333336777654
No 426
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.83 E-value=0.53 Score=45.21 Aligned_cols=77 Identities=25% Similarity=0.274 Sum_probs=46.2
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccccc---CCHHHHhhc
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE 236 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ll~~ 236 (342)
.+..++|+|+|. |+||..+|..|+ ++..-++..+|.... ..+. ..+..... ....... .+..+.+++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~-~g~a------~Dl~~~~~-~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA-PGVA------ADLSHIDT-PAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC-cccc------cchhhcCc-CceEEEecCCCchHHHhCC
Confidence 456779999999 999999998863 145558999998321 1100 00111011 1111111 223678899
Q ss_pred CCEEEEcCCC
Q 019387 237 ADVISLHPVL 246 (342)
Q Consensus 237 aDiV~l~~pl 246 (342)
||+|+++.-.
T Consensus 77 aDvVVitaG~ 86 (321)
T PTZ00325 77 ADLVLICAGV 86 (321)
T ss_pred CCEEEECCCC
Confidence 9999888653
No 427
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=91.82 E-value=0.84 Score=42.92 Aligned_cols=94 Identities=20% Similarity=0.184 Sum_probs=56.7
Q ss_pred CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-----hcC
Q 019387 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA 237 (342)
Q Consensus 164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-----~~a 237 (342)
.|.+|.|.| -|.+|+.+++. ++.+|++|++.+.+.+.. + +...+ +....-.....++.+.+ ...
T Consensus 143 ~g~~vlI~ga~g~vG~~aiql-A~~~G~~vi~~~~s~~~~-~-~l~~~-------Ga~~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQI-AKIKGCKVIGCAGSDDKV-A-WLKEL-------GFDAVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEeCCHHHH-H-HHHHc-------CCCEEEeCCCccHHHHHHHHCCCCc
Confidence 478999999 69999999998 589999999887765432 1 11111 11111000112222222 235
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|+|+-+... . .....++.++++..++.++.
T Consensus 213 d~vld~~g~--~----~~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 213 DCYFDNVGG--E----FSSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred EEEEECCCH--H----HHHHHHHhhccCCEEEEEcc
Confidence 777766542 1 12566788888888888763
No 428
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.73 E-value=0.83 Score=44.11 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=59.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l 242 (342)
.|+++.|.|.|.+|+.+++. ++..|++|++.+...+.+.. ....+ +.... .......+.++....|+++-
T Consensus 180 ~g~~vlV~G~G~vG~~av~~-Ak~~G~~vi~~~~~~~~~~~-~~~~~-------Ga~~~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKI-AKAMGHHVTVISSSDKKREE-ALEHL-------GADDYLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCeEEEEcccHHHHHHHHH-HHHCCCeEEEEeCCHHHHHH-HHHhc-------CCcEEecCCChHHHHHhcCCCcEEEE
Confidence 57899999999999999998 58999999888776543221 11111 11000 00001123333345799998
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|++... .-...++.+++|..++.++.
T Consensus 251 ~~g~~~-----~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 251 TVPVFH-----PLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred CCCchH-----HHHHHHHHhccCCEEEEECC
Confidence 876311 12345778888988888874
No 429
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=91.72 E-value=0.58 Score=47.76 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=62.5
Q ss_pred cccCCCeEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 161 ~~L~gktvgIvG~G~I-G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
..+.|+...++|-..| |..++..| +-....|..+-. ...++.+.+.++|+
T Consensus 158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHS----------------------------KT~~lae~v~~ADI 208 (935)
T KOG4230|consen 158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHS----------------------------KTRNLAEKVSRADI 208 (935)
T ss_pred CccccceeEEEecccccCChHHHHH-HhcCceEEEecC----------------------------CCccHHHHhccCCE
Confidence 5689999999998875 88999887 677888887532 12578999999999
Q ss_pred EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (342)
Q Consensus 240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd 278 (342)
|+..+-.. +++-. .++|||+++|+++---+-|
T Consensus 209 vIvAiG~P----efVKg---dWiKpGavVIDvGINyvpD 240 (935)
T KOG4230|consen 209 VIVAIGQP----EFVKG---DWIKPGAVVIDVGINYVPD 240 (935)
T ss_pred EEEEcCCc----ceeec---ccccCCcEEEEccccccCC
Confidence 99998642 33333 5788999999998654444
No 430
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=91.71 E-value=0.34 Score=36.16 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=29.5
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~ 200 (342)
++.|||-|.+|-++|..| ..+|.+|+.+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence 588999999999999998 689999999988764
No 431
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=91.66 E-value=1 Score=42.49 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=32.0
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~ 199 (342)
..|..++|.|+|+|.+|.++|+.|+ ..|. ++..+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Confidence 4588999999999999999999985 5677 688888654
No 432
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.63 E-value=0.6 Score=44.59 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=56.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~ 243 (342)
.|.+|.|.|.|.+|...++. ++..|++|++.++++++... ...+ +.... +... ++.-...|+++.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~~~--a~~~-------Ga~~v-i~~~---~~~~~~~d~~i~~ 230 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAARRL--ALAL-------GAASA-GGAY---DTPPEPLDAAILF 230 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHHHH--HHHh-------CCcee-cccc---ccCcccceEEEEC
Confidence 38899999999999998887 58999999998887654311 1111 11110 0000 0001235776665
Q ss_pred CCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
... .+ .-...++.+++|..++.++-
T Consensus 231 ~~~-~~----~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 231 APA-GG----LVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CCc-HH----HHHHHHHhhCCCcEEEEEec
Confidence 543 11 23456788899988888774
No 433
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=91.59 E-value=0.95 Score=43.77 Aligned_cols=127 Identities=18% Similarity=0.266 Sum_probs=93.4
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---hcCCEEEE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL 242 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---~~aDiV~l 242 (342)
..+|++|++-|||.++-.+ ..-|+.|.+|+|..++. +.+.+. ..++. ......++++++ +.-..|++
T Consensus 7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skv-D~flan-----eak~~---~i~ga~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKV-DEFLAN-----EAKGT---KIIGAYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhH-HHHHHH-----hhcCC---cccCCCCHHHHHHhcCCCcEEEE
Confidence 4699999999999999886 47899999999987643 333221 11221 223446888775 44566766
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE 303 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP 303 (342)
.+-...-...+| ++....|.+|-++|+-+-..--|+.--.+.|.+..|...+.-|.-.|-
T Consensus 77 lvkAG~pVD~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEE 136 (487)
T KOG2653|consen 77 LVKAGAPVDQFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEE 136 (487)
T ss_pred EeeCCCcHHHHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccc
Confidence 665443333333 456677889999999999999999999999998888889998988886
No 434
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.57 E-value=2.6 Score=35.27 Aligned_cols=113 Identities=15% Similarity=-0.078 Sum_probs=67.9
Q ss_pred CCceEEEEeCCC---Cc---hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhC-CCceEEEecCCC----CccHHHHHH
Q 019387 13 NGKYRVVSTKPM---PG---TRWINLLIEQDCRVEICTQKKTILSVEDIIALIG-DKCDGVIGQLTE----DWGETLFAA 81 (342)
Q Consensus 13 ~~~~~vl~~~~~---~~---~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-~~~d~vi~~~~~----~~~~e~l~~ 81 (342)
|.+++||+...- |+ ......|+..|+++..... ..+.+++.+.+. .++|+|...... ..-+++++.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~---~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~ 77 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV---MTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREK 77 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHH
Confidence 456676665322 22 1233567889999986543 457888877654 357888765321 222455666
Q ss_pred hhccCC-ce-EEEccccC-----CccChhHHHhCCeeEecCCCCCchhHHHHHH
Q 019387 82 LSRAGG-KA-FSNMAVGY-----NNVDVNAANKYGIAVGNTPGVLTETTAELAA 128 (342)
Q Consensus 82 l~~l~~-k~-i~~~~~G~-----d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l 128 (342)
+...+. +. |..-|+-. ...+.+.+++.|+..+..|+...+.++++.-
T Consensus 78 L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~ 131 (137)
T PRK02261 78 CIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLK 131 (137)
T ss_pred HHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHH
Confidence 655433 11 22333221 2345678999999999999988777777653
No 435
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.53 E-value=0.2 Score=41.49 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc
Q 019387 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (342)
Q Consensus 165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~ 199 (342)
.++|.|+|+|.+|..+|+.|+ ..|+ ++..+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence 579999999999999999985 5577 788888653
No 436
>PLN02214 cinnamoyl-CoA reductase
Probab=91.52 E-value=0.62 Score=44.78 Aligned_cols=83 Identities=12% Similarity=-0.016 Sum_probs=49.6
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
.+.+++|.|.|- |-||+.+++.| ..-|.+|.+.++..+................-...........+++++++.+|+|
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 467899999998 99999999998 4678999998876543111111100000000000001112234677888999998
Q ss_pred EEcCC
Q 019387 241 SLHPV 245 (342)
Q Consensus 241 ~l~~p 245 (342)
+-+..
T Consensus 86 ih~A~ 90 (342)
T PLN02214 86 FHTAS 90 (342)
T ss_pred EEecC
Confidence 77764
No 437
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.52 E-value=1.1 Score=43.06 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=60.7
Q ss_pred CeEEEEec-CHHHHHHHHHHHh-cCCc-----EEEEEcCCchh-HHHHHHhhhhhhhhccCCC-CccccccCCHHHHhhc
Q 019387 166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT-RLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLRE 236 (342)
Q Consensus 166 ktvgIvG~-G~IG~~vA~~l~~-afg~-----~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ll~~ 236 (342)
.+|+|+|. |++|..+|-.|+. .+-- ++..+|..... ...... ..+...... ........+..+.+++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a----~Dl~~~~~~~~~~~~i~~~~~~~~~d 78 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVA----MELEDCAFPLLAEIVITDDPNVAFKD 78 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceee----hhhhhccccccCceEEecCcHHHhCC
Confidence 48999999 9999999987642 2322 78999985422 011100 001110000 0001112345677899
Q ss_pred CCEEEEcCCCCc---ccc--------cccC--HHHHhcCC-CCcEEEEcCCCcccCHHHHHHH
Q 019387 237 ADVISLHPVLDK---TTY--------HLIN--KERLATMK-KEAILVNCSRGPVIDEVALVEH 285 (342)
Q Consensus 237 aDiV~l~~pl~~---~t~--------~li~--~~~l~~mk-~ga~lINvaRG~~vd~~aL~~a 285 (342)
||+|+++.-... +|+ .++. ...+..-. +.+++|+++ +.+|.-..+-.
T Consensus 79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~ 139 (322)
T cd01338 79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAM 139 (322)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHH
Confidence 999998864321 121 1111 12333344 588999996 66666554443
No 438
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=91.50 E-value=0.88 Score=41.72 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=28.9
Q ss_pred ccCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcC
Q 019387 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDL 197 (342)
Q Consensus 162 ~L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~ 197 (342)
.+.||++.|.|- +.||+++|+.|+ ..|++|+...+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la-~~G~~v~~~~~ 40 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLH-AAGAELGITYL 40 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHH-HCCCEEEEEec
Confidence 367999999997 489999999985 67999876543
No 439
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.44 E-value=0.73 Score=43.47 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=58.6
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc-cCCHH--HH--hhcC
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMD--EV--LREA 237 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~--~l--l~~a 237 (342)
.|.+|.|+|.|.+|+.+++. +++.|++ |.+.++.++.. +.. ..+ +.. ..+.. ..+.. .. -...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~l-a~~~G~~~v~~~~~~~~~~-~~~-~~~-------g~~-~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQL-LKLNGASRVTVAEPNEEKL-ELA-KKL-------GAT-ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEECCCHHHH-HHH-HHh-------CCe-EEecCCCCCHHHHHHhcCCCC
Confidence 47899999999999999998 5899998 78887765432 111 111 110 00000 01111 11 1457
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~ 275 (342)
|+++.+.+.. ......++.|+++..+|+++..+
T Consensus 228 d~v~~~~~~~-----~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 228 DVVIEATGVP-----KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred cEEEECCCCh-----HHHHHHHHHHhcCCEEEEEecCC
Confidence 9998876521 22345577888888999887554
No 440
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.43 E-value=0.76 Score=43.95 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=57.7
Q ss_pred eEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc--c-CCHHHHhhcCCEE
Q 019387 167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADVI 240 (342)
Q Consensus 167 tvgIvG~-G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~~ll~~aDiV 240 (342)
+|+|||. |++|..+|-.|+ .-+ -++..+|.. ....+. ..+.... ....... . +++.+.+++||+|
T Consensus 2 KI~IIGaaG~VG~~~a~~l~-~~~~~~elvLiDi~-~a~g~a------lDL~~~~-~~~~i~~~~~~~~~y~~~~daDiv 72 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIV-NTPGVA------ADLSHIN-TPAKVTGYLGPEELKKALKGADVV 72 (310)
T ss_pred EEEEECCCCHHHHHHHHHHH-hCCCCcEEEEEecC-ccceee------hHhHhCC-CcceEEEecCCCchHHhcCCCCEE
Confidence 7999999 999999998863 334 479999987 211111 1111111 1111221 1 3456778999999
Q ss_pred EEcCCCC--c-ccc-cccC---------HHHHhcCCCCcEEEEcCCC
Q 019387 241 SLHPVLD--K-TTY-HLIN---------KERLATMKKEAILVNCSRG 274 (342)
Q Consensus 241 ~l~~pl~--~-~t~-~li~---------~~~l~~mk~ga~lINvaRG 274 (342)
+++.-.. | +|| .++. .+.+..-.|.+++||++-.
T Consensus 73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 8885432 2 222 1221 1244445688999999753
No 441
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=91.42 E-value=5.5 Score=33.61 Aligned_cols=118 Identities=16% Similarity=0.051 Sum_probs=77.7
Q ss_pred CCceEEEEeCCCCc------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHh-CCCceEEEecCCC----CccHHHHHH
Q 019387 13 NGKYRVVSTKPMPG------TRWINLLIEQDCRVEICTQKKTILSVEDIIALI-GDKCDGVIGQLTE----DWGETLFAA 81 (342)
Q Consensus 13 ~~~~~vl~~~~~~~------~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~-~~~~d~vi~~~~~----~~~~e~l~~ 81 (342)
+.+++|++.+.=-+ ...-.+|++.|++|.... .-.+++|+.+.. ..++|+|.+++.. ..-+++.+.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g---~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~ 86 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLG---LFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEA 86 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecC---CcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHH
Confidence 57888888632221 223466889999997643 345778886644 5568988876532 223566778
Q ss_pred hhccCCceEEEcccc-CCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHH
Q 019387 82 LSRAGGKAFSNMAVG-YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133 (342)
Q Consensus 82 l~~l~~k~i~~~~~G-~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~ 133 (342)
|...|...|.....| +--=|++..++.|+.=.-.|+.+...+++..+..+-.
T Consensus 87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHHh
Confidence 888887666633333 3333677899999998889998877777766655443
No 442
>PRK13529 malate dehydrogenase; Provisional
Probab=91.33 E-value=3 Score=42.86 Aligned_cols=176 Identities=19% Similarity=0.182 Sum_probs=110.2
Q ss_pred hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (342)
Q Consensus 107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~ 186 (342)
+..|.+.|+--. .+|-.+++-+++..|- .|..|...++.|+|.|.-|-.+|+.|..
T Consensus 261 r~~i~~FnDDiQ---GTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~ 316 (563)
T PRK13529 261 RDEICTFNDDIQ---GTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIVA 316 (563)
T ss_pred ccCCCeeccccc---hHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHH
Confidence 446888887654 3466678888887762 2456889999999999999999998753
Q ss_pred c---CCc-------EEEEEcCCc---hhH--HHHHHhhhhhhhhccCCCCccc---cccCCHHHHhhcC--CEEEEcCCC
Q 019387 187 G---FKM-------NLIYYDLYQ---ATR--LEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPVL 246 (342)
Q Consensus 187 a---fg~-------~V~~~d~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ll~~a--DiV~l~~pl 246 (342)
+ .|. +++.+|... +.+ +..+...|. +. ......+ ....+|.|+++.. |+++=+-
T Consensus 317 ~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa---~~-~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S-- 390 (563)
T PRK13529 317 AMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYA---RK-REELADWDTEGDVISLLEVVRNVKPTVLIGVS-- 390 (563)
T ss_pred HHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHh---hh-cccccccccccCCCCHHHHHhccCCCEEEEec--
Confidence 2 466 788888763 111 223333332 11 1100001 1235899999998 9987542
Q ss_pred CcccccccCHHHHhcCCC---CcEEEEcCCCccc---CHHHHHHHHHcCC-ceEEEEe---cC----CCCC---CCcccc
Q 019387 247 DKTTYHLINKERLATMKK---EAILVNCSRGPVI---DEVALVEHLKQNP-MFRVGLD---VF----EVTE---LGFSSF 309 (342)
Q Consensus 247 ~~~t~~li~~~~l~~mk~---ga~lINvaRG~~v---d~~aL~~aL~~g~-i~~aaLD---V~----~~EP---~~~~~t 309 (342)
..-+.|+++.++.|.+ ..++.=.|.-..- ..++.+++ .+|+ |.+.+.- |. ...| .|.++.
T Consensus 391 --~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~-T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iF 467 (563)
T PRK13529 391 --GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAW-TDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIF 467 (563)
T ss_pred --CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHh-hcCCEEEEECCCCCCeeeCCeEeccCcCcceeec
Confidence 2248999999999987 7888888776653 33333333 2354 5544542 11 1233 678888
Q ss_pred cccccc
Q 019387 310 KHISTQ 315 (342)
Q Consensus 310 Phia~~ 315 (342)
|-++-.
T Consensus 468 PGiglG 473 (563)
T PRK13529 468 PGLGLG 473 (563)
T ss_pred ccchhh
Confidence 877544
No 443
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=91.28 E-value=3.4 Score=42.68 Aligned_cols=171 Identities=19% Similarity=0.149 Sum_probs=108.1
Q ss_pred hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (342)
Q Consensus 107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~ 186 (342)
+..|.+.|+--. .+|-.+++-+++..|-. |..|...+|.|+|.|..|-.+|+.|..
T Consensus 287 r~~i~~FnDDiQ---GTaaV~lAgll~A~r~~---------------------g~~l~d~riv~~GAGsAgigia~ll~~ 342 (581)
T PLN03129 287 RTTHLCFNDDIQ---GTAAVALAGLLAALRAT---------------------GGDLADQRILFAGAGEAGTGIAELIAL 342 (581)
T ss_pred ccCCCEeccccc---hHHHHHHHHHHHHHHHh---------------------CCchhhceEEEECCCHHHHHHHHHHHH
Confidence 446888776654 44666788888877622 357889999999999999999998754
Q ss_pred c----CCc-------EEEEEcCCch---hH---HHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEEEcCCCC
Q 019387 187 G----FKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLD 247 (342)
Q Consensus 187 a----fg~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~l~~pl~ 247 (342)
+ .|. +++.+|...- .+ ...+...|. +. . ....+|.|+++. .|+++=+--
T Consensus 343 ~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa---~~-~------~~~~~L~e~v~~vkptvLIG~S~-- 410 (581)
T PLN03129 343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFA---HD-H------EPGASLLEAVKAIKPTVLIGLSG-- 410 (581)
T ss_pred HHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHH---hh-c------ccCCCHHHHHhccCCCEEEEecC--
Confidence 2 355 7888887641 11 222222221 11 1 123699999998 899875531
Q ss_pred cccccccCHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHcCC-ceEEEE-------ecCCCCC---CCccccc
Q 019387 248 KTTYHLINKERLATMK---KEAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGL-------DVFEVTE---LGFSSFK 310 (342)
Q Consensus 248 ~~t~~li~~~~l~~mk---~ga~lINvaRG~~---vd~~aL~~aL~~g~-i~~aaL-------DV~~~EP---~~~~~tP 310 (342)
.-+.|+++.++.|. +..++.=.|.-.- +..++.+++ .+|+ |.+.+. +--...| .|.++.|
T Consensus 411 --~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFP 487 (581)
T PLN03129 411 --VGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFP 487 (581)
T ss_pred --CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEEeCCCCCCeeeCCeeecCccccceeecc
Confidence 23899999999995 7788877765542 233444444 3355 444432 1112233 6788888
Q ss_pred cccccc
Q 019387 311 HISTQD 316 (342)
Q Consensus 311 hia~~~ 316 (342)
-|+-..
T Consensus 488 GiglGa 493 (581)
T PLN03129 488 GIGLGA 493 (581)
T ss_pred chhhHH
Confidence 775443
No 444
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=91.27 E-value=0.88 Score=38.02 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=49.2
Q ss_pred ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301 (342)
Q Consensus 226 ~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~ 301 (342)
-..+-++++++||+|+-.-|.+ .+.++.|++|.++|-...-. ....+++.|.+.++...++|-...
T Consensus 54 I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 54 IVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred EecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 3456679999999998766532 67899999999999876654 588899999999999999886554
No 445
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.24 E-value=1.2 Score=42.71 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhc-CC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEG-FK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~a-fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~ 241 (342)
.|.+|.|+|.|.||...++.+ +. +| .+|++.++++++. +... .. +.. . ...++.+-. ..|+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a-~~~~g~~~vi~~~~~~~k~-~~a~-~~-------~~~---~-~~~~~~~~~-g~d~vi 227 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLL-KQIYPESKLVVFGKHQEKL-DLFS-FA-------DET---Y-LIDDIPEDL-AVDHAF 227 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHhcCCCcEEEEeCcHhHH-HHHh-hc-------Cce---e-ehhhhhhcc-CCcEEE
Confidence 488999999999999988875 44 54 6899999876432 2111 01 100 0 001111111 479999
Q ss_pred EcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
-+.... .+...+ ...++.+++|..++.++-
T Consensus 228 D~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 ECVGGR-GSQSAI-NQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ECCCCC-ccHHHH-HHHHHhCcCCcEEEEEee
Confidence 887631 111122 346788999999888763
No 446
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.19 E-value=1.1 Score=43.43 Aligned_cols=37 Identities=32% Similarity=0.374 Sum_probs=32.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~ 201 (342)
.|.+|.|.|.|.+|..+++. ++.+|+ +|++.++..+.
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~-ak~~G~~~vi~~~~~~~~ 224 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEG-ARIRGASRIIGVDLNPSK 224 (369)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence 48899999999999999998 589999 79999887654
No 447
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=91.16 E-value=0.65 Score=44.01 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=49.4
Q ss_pred cCCCeEEEEe---cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387 163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (342)
Q Consensus 163 L~gktvgIvG---~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi 239 (342)
+.|++|+|+| +|+..++.++.| +.||++|..+.|..-...+...+.. ...+ ..+......++++.++|+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~l----~~~~---~~~~~~~~~e~~i~~~DV 227 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEEL----EEKG---GVVVEHDSDEEVIEEADV 227 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHHH----hhcC---ceEEEecchhhhhccCCE
Confidence 7899999999 899999999998 7999999999876432211111111 0111 112234566669999999
Q ss_pred EEEc
Q 019387 240 ISLH 243 (342)
Q Consensus 240 V~l~ 243 (342)
+.+.
T Consensus 228 l~~l 231 (316)
T COG0540 228 LYML 231 (316)
T ss_pred EEee
Confidence 9543
No 448
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.15 E-value=1 Score=43.01 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=56.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCc-ccccc--CCHHHHhh--cC
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRA--SSMDEVLR--EA 237 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~l~~ll~--~a 237 (342)
.|++|.|.|.|.+|+.+++. ++.+|++ |++.+++.+.. +. ...++ .... ..... ..+.++.. ..
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~-a~~~G~~~v~~~~~~~~~~-~~-~~~~G-------a~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQC-AVALGAKSVTAIDINSEKL-AL-AKSLG-------AMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEECCCHHHH-HH-HHHcC-------CceEecCcccCHHHHHHHhcCCCC
Confidence 47899999999999999998 5899997 67787766432 11 11111 1000 00000 11222222 34
Q ss_pred C-EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 238 D-VISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 238 D-iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
| +++-|... +. .+ ...++.+++|..++.++
T Consensus 230 d~~v~d~~G~-~~---~~-~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILETAGV-PQ---TV-ELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEECCCC-HH---HH-HHHHHHhhcCCEEEEEc
Confidence 6 77766652 11 22 44678889999999886
No 449
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=91.14 E-value=1 Score=42.81 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=58.5
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHH----HHhh-cC
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMD----EVLR-EA 237 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~----~ll~-~a 237 (342)
.|++|.|.|.|.+|+.+++. ++++|++|++.+...+.... ...+ +.... ......++. .+.. ..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~-a~~~G~~vi~~~~~~~~~~~--~~~~-------g~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMI-ASALGARVIAVDIDDDKLEL--AREL-------GAVATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCeEEEEeCCHHHHHH--HHHh-------CCCEEEccccchhHHHHHHHHhCCCC
Confidence 47899999999999999998 58999999988776544211 1111 11000 000001222 2222 47
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
|+++-+... .. .-...++.++++..+++++..
T Consensus 235 d~vi~~~g~-~~----~~~~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 235 HVSVDALGI-PE----TCRNSVASLRKRGRHVQVGLT 266 (345)
T ss_pred CEEEEcCCC-HH----HHHHHHHHhhcCCEEEEeCCc
Confidence 888877642 11 123467788888899988753
No 450
>PRK08374 homoserine dehydrogenase; Provisional
Probab=90.99 E-value=0.62 Score=45.02 Aligned_cols=128 Identities=17% Similarity=0.266 Sum_probs=64.5
Q ss_pred CeEEEEecCHHHHHHHHHHHh-------cCC--cEEEEE-cCCchh------HHHHHHhhhhhhhhccCCCCcccc----
Q 019387 166 QTVGVIGAGRIGSAYARMMVE-------GFK--MNLIYY-DLYQAT------RLEKFVTAYGQFLKANGEQPVTWK---- 225 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~-------afg--~~V~~~-d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---- 225 (342)
-+|+|+|+|++|+.+++.|.+ .+| .+|.+. |++... ..++..+ .....+. ...+.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~----~~~~~~~-~~~~~~~~~ 77 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKE----VKENFGK-LSNWGNDYE 77 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHH----hhhccCc-hhhcccccc
Confidence 489999999999999987643 145 676644 432110 0011000 0000000 00010
Q ss_pred -ccCCHHHHh--hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc-eEEEEecCC
Q 019387 226 -RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM-FRVGLDVFE 300 (342)
Q Consensus 226 -~~~~l~~ll--~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g~i-~~aaLDV~~ 300 (342)
...++++++ ..+|+|+-+.+. + ....-..+.++.|.-+|-...|.+- ..++|.+.-++... ..+.-.|.-
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~~--~---~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~ 152 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTND--K---NAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMA 152 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCCc--H---HHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccc
Confidence 012677887 479999988752 2 1222334456677777766665432 44566655544322 222333444
Q ss_pred CCC
Q 019387 301 VTE 303 (342)
Q Consensus 301 ~EP 303 (342)
.-|
T Consensus 153 GiP 155 (336)
T PRK08374 153 GTP 155 (336)
T ss_pred cCC
Confidence 444
No 451
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.74 E-value=0.81 Score=45.81 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=68.2
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-ccc-ccCCHHHHhhcCCEEEEcC
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWK-RASSMDEVLREADVISLHP 244 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~ll~~aDiV~l~~ 244 (342)
+|.|+|+|..|.+.|+.| ...|.+|.++|............. +...+.... +.. ....+.+.+.+.|.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~~----l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQE----LEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHHH----HHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 589999999999999987 688999999998765432211000 111111100 000 0012335678899988754
Q ss_pred CCCcccc----------cccCHHHH--hcCC-CCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 245 VLDKTTY----------HLINKERL--ATMK-KEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 245 pl~~~t~----------~li~~~~l--~~mk-~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
...+.+. .++....+ ..++ ...+-|--+.|..-...-|.+.|+.
T Consensus 77 gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 77 GIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 4433221 22333322 3333 2356666779998888877777765
No 452
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.71 E-value=0.69 Score=44.17 Aligned_cols=34 Identities=35% Similarity=0.675 Sum_probs=28.3
Q ss_pred CeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCc
Q 019387 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQ 199 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~ 199 (342)
++|+|+|.|+||+++|-+|. +.++-++..||...
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~ 35 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINE 35 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEccc
Confidence 47999999999999998764 35666899999883
No 453
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.64 E-value=1.6 Score=42.97 Aligned_cols=95 Identities=20% Similarity=0.387 Sum_probs=64.8
Q ss_pred ccccCCCeEEEEec---CHH-------HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC
Q 019387 160 GNLLKGQTVGVIGA---GRI-------GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (342)
Q Consensus 160 ~~~L~gktvgIvG~---G~I-------G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (342)
++.+.|.+|.++|+ |++ .-.+.+.| +..|.+|.+|||+.+....+. . + ... ....
T Consensus 317 ~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l-~~~g~~v~~~DP~v~~~~~~~-~---------~---~~~-~~~~ 381 (436)
T COG0677 317 GKPLSGSKILVLGLAYKGDVDDLRESPALDIIELL-EEWGGEVLVYDPYVKELPTRE-D---------G---EGV-TLAI 381 (436)
T ss_pred CCCCcCceEEEEEeeecCCCcccccCchHHHHHHH-HHhCCeEEEECCCCCcchhhh-h---------c---ccc-chhh
Confidence 56789999999998 333 35677777 688999999999986421110 0 0 000 1368
Q ss_pred HHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 230 l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
+++.++++|+|++... -+...-++.+.+.++ ..++|++ |+
T Consensus 382 ~e~al~~~D~vVi~tD--H~~fk~id~~~i~~~--~~vivDt-rn 421 (436)
T COG0677 382 LEEALKDADAVVIATD--HSEFKEIDYEAIGKE--AKVIVDT-RN 421 (436)
T ss_pred HHHHhccCCEEEEEec--cHHhhcCCHHHhccC--CcEEEEC-cc
Confidence 8999999999998864 122235788887776 4577776 54
No 454
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=90.62 E-value=1.7 Score=40.69 Aligned_cols=94 Identities=22% Similarity=0.147 Sum_probs=57.7
Q ss_pred CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC----HHHHhh--c
Q 019387 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVLR--E 236 (342)
Q Consensus 164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~ll~--~ 236 (342)
.|.+|.|.|. |.+|+.+++. ++++|++|++.....+.+... ..+ +....-.....+ +.++.. .
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~-a~~~G~~v~~~~~~~~~~~~~--~~~-------g~~~~~~~~~~~~~~~i~~~~~~~~ 208 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAML-AAARGINVINLVRRDAGVAEL--RAL-------GIGPVVSTEQPGWQDKVREAAGGAP 208 (324)
T ss_pred CCCEEEEcccccHHHHHHHHH-HHHCCCeEEEEecCHHHHHHH--Hhc-------CCCEEEcCCCchHHHHHHHHhCCCC
Confidence 4789999986 9999999998 589999998876655432111 111 111000000112 223332 4
Q ss_pred CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
.|+|+-|+.. + .....++.++++..+|.++.
T Consensus 209 ~d~v~d~~g~-~-----~~~~~~~~l~~~g~~v~~g~ 239 (324)
T cd08292 209 ISVALDSVGG-K-----LAGELLSLLGEGGTLVSFGS 239 (324)
T ss_pred CcEEEECCCC-h-----hHHHHHHhhcCCcEEEEEec
Confidence 8888877652 1 12566888999999998863
No 455
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.61 E-value=0.71 Score=44.66 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=56.5
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-ccccc-CCHHH----Hh-h
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRA-SSMDE----VL-R 235 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~l~~----ll-~ 235 (342)
.|.+|.|.|.|.+|..+++. ++.+|+ +|++.++........ ..+ +.... ..... .++.+ +. .
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~-a~~~G~~~Vi~~~~~~~~~~~~--~~~-------ga~~~i~~~~~~~~~~~~~~~~~~~ 253 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMG-AKIAGASRIIGVDINEDKFEKA--KEF-------GATDFINPKDSDKPVSEVIREMTGG 253 (365)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHHHHHH--HHc-------CCCcEeccccccchHHHHHHHHhCC
Confidence 58899999999999999997 589999 688888866432111 111 11000 00000 11122 11 2
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCC
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR 273 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaR 273 (342)
..|+|+-|.... . .-...+..++++ ..+|.++.
T Consensus 254 g~d~vid~~g~~-~----~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 254 GVDYSFECTGNA-D----LMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCEEEECCCCh-H----HHHHHHHhcccCCCEEEEEcC
Confidence 478888776421 1 224467788775 78888764
No 456
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.53 E-value=0.38 Score=45.78 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=68.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-----hcC
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA 237 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-----~~a 237 (342)
.|+|+.|.|+|.+|-+++.- +++.|+ ++++.|.++++...+. .+ ...+=..+. +...++.|.+ ...
T Consensus 192 ~GstvAVfGLG~VGLav~~G-aka~GAsrIIgvDiN~~Kf~~ak--~f---GaTe~iNp~--d~~~~i~evi~EmTdgGv 263 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMG-AKAAGASRIIGVDINPDKFEKAK--EF---GATEFINPK--DLKKPIQEVIIEMTDGGV 263 (375)
T ss_pred CCCEEEEEecchHHHHHHHh-HHhcCcccEEEEecCHHHHHHHH--hc---CcceecChh--hccccHHHHHHHHhcCCc
Confidence 58999999999999999998 589998 7999999986532221 11 111111111 0112344444 236
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCC---cEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKE---AILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~g---a~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV 298 (342)
|+-+-|+-. .++. .+.|...++| +++|-++-.+..-.-.-.+.+.-..+.|.+.--
T Consensus 264 DysfEc~G~-~~~m----~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG 322 (375)
T KOG0022|consen 264 DYSFECIGN-VSTM----RAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGG 322 (375)
T ss_pred eEEEEecCC-HHHH----HHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEeccc
Confidence 666666542 2221 3456667766 566666543332222233444444455554433
No 457
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=90.52 E-value=1.1 Score=44.16 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=24.6
Q ss_pred CeEEEEecCHHHHHHHHHHHh-cC-CcEEEEEcC
Q 019387 166 QTVGVIGAGRIGSAYARMMVE-GF-KMNLIYYDL 197 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~-af-g~~V~~~d~ 197 (342)
.+|||.|+|+||+.+.|.|.+ .| ..+|.+.+.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd 94 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIND 94 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 589999999999999998642 23 457776653
No 458
>PRK07576 short chain dehydrogenase; Provisional
Probab=90.49 E-value=0.73 Score=42.31 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=33.7
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
.+.||++.|.|- |.||..+++.| ...|++|+..+++++.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l-~~~G~~V~~~~r~~~~ 45 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAF-ARAGANVAVASRSQEK 45 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 578999999988 89999999998 4789999999987643
No 459
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.45 E-value=0.67 Score=44.22 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=60.6
Q ss_pred CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p 245 (342)
.+|.|+|.|.||.-++-+|+ ..|..|+..-+.+. .+++... +..+...............-.+.+..+|+|++++-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~~--~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLA-KAGHDVTLLVRSRR--LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHH-hCCCeEEEEecHHH--HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 37999999999999999985 56777777766543 2222221 11121111100111112233455668999999874
Q ss_pred CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (342)
Q Consensus 246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g 289 (342)
. -++...+ +......++.+.++-.--| +=.++.+-+.....
T Consensus 77 a-~q~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~ 117 (307)
T COG1893 77 A-YQLEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKE 117 (307)
T ss_pred c-ccHHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcc
Confidence 2 2333322 2234445566555433222 22233455554444
No 460
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.41 E-value=1.4 Score=41.59 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=57.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL 242 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l 242 (342)
.|.+|.|+|.|.+|+.+++. ++.+|.+|++.++..+.. +. ...+ +.... ...........-...|+++.
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~-a~~~G~~v~~~~~~~~~~-~~-~~~~-------g~~~~~~~~~~~~~~~~~~~~d~vi~ 231 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQY-ARAMGFETVAITRSPDKR-EL-ARKL-------GADEVVDSGAELDEQAAAGGADVILV 231 (330)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCHHHH-HH-HHHh-------CCcEEeccCCcchHHhccCCCCEEEE
Confidence 46899999999999999888 489999999988776542 11 1111 11000 00000111111235788887
Q ss_pred cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
|+... . .....+..|+++..+|+++.
T Consensus 232 ~~~~~-~----~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 232 TVVSG-A----AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred CCCcH-H----HHHHHHHhcccCCEEEEECC
Confidence 76421 1 23556788988888888763
No 461
>PRK06114 short chain dehydrogenase; Provisional
Probab=90.39 E-value=0.73 Score=41.89 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=31.9
Q ss_pred ccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~ 200 (342)
.+.||++.|.| -|.||+.+|+.| ...|++|++.++..+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD 43 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 47899999998 559999999998 478999999887654
No 462
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.38 E-value=1.9 Score=46.66 Aligned_cols=112 Identities=23% Similarity=0.315 Sum_probs=69.9
Q ss_pred CeEEEEecCHHHHHH-HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387 166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (342)
Q Consensus 166 ktvgIvG~G~IG~~v-A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~ 244 (342)
+++.|+|+|.+|.+. |+.| +..|.+|.++|.......+.. ...+.. +.. ..-.+.+.++|+|+...
T Consensus 5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~L--------~~~gi~---~~~-g~~~~~~~~~d~vV~Sp 71 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEKL--------KAKGAR---FFL-GHQEEHVPEDAVVVYSS 71 (809)
T ss_pred ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHHH--------HHCCCE---EeC-CCCHHHcCCCCEEEECC
Confidence 369999999999998 9987 689999999997654332221 111111 111 11225567899998774
Q ss_pred CCCccc----------ccccCHHHH-hc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387 245 VLDKTT----------YHLINKERL-AT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP 290 (342)
Q Consensus 245 pl~~~t----------~~li~~~~l-~~-mk~-ga~lINvaRG~~vd~~aL~~aL~~g~ 290 (342)
.-.+.+ ..++++..| .. ++. ..+-|-=+.|..-...-+...|++..
T Consensus 72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 433332 233444333 22 332 35677778999888888888887643
No 463
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=90.37 E-value=1.5 Score=40.69 Aligned_cols=96 Identities=22% Similarity=0.191 Sum_probs=58.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH----HHHh--hc
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVL--RE 236 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~ll--~~ 236 (342)
.|.+|.|.|-|.+|+.+++. +++.|++ |++.++.++.. + ....+ +....-.....++ .++. ..
T Consensus 129 ~~~~vlI~g~g~vg~~~~~l-a~~~g~~~v~~~~~~~~~~-~-~~~~~-------g~~~~~~~~~~~~~~~l~~~~~~~~ 198 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQL-AAAAGARRVIAIDRRPARL-A-LAREL-------GATEVVTDDSEAIVERVRELTGGAG 198 (312)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEECCCHHHH-H-HHHHh-------CCceEecCCCcCHHHHHHHHcCCCC
Confidence 47899999999999999998 5899999 88877665432 1 11111 1100000011122 2222 23
Q ss_pred CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
.|+++-|... .......++.|+++..+++++..
T Consensus 199 vd~vld~~g~-----~~~~~~~~~~l~~~g~~~~~g~~ 231 (312)
T cd08269 199 ADVVIEAVGH-----QWPLDLAGELVAERGRLVIFGYH 231 (312)
T ss_pred CCEEEECCCC-----HHHHHHHHHHhccCCEEEEEccC
Confidence 7888877542 11234567888889999988643
No 464
>PRK06172 short chain dehydrogenase; Provisional
Probab=90.35 E-value=0.68 Score=41.93 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=33.1
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
.+.||++.|.|- |.||+.+|+.|+ .-|++|+..+++.+.
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~ 43 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAG 43 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 467899999996 799999999985 679999999987643
No 465
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.32 E-value=2.6 Score=42.01 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=66.7
Q ss_pred CC-CeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHhhcCCEE
Q 019387 164 KG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVI 240 (342)
Q Consensus 164 ~g-ktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~aDiV 240 (342)
.| ++|.|+|+|.+|.+.++.|.+.-| .+|.++|.......... +. .+ ..+. ...+. +.+.++|+|
T Consensus 5 ~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~-------l~-~g---~~~~~g~~~~-~~~~~~d~v 72 (438)
T PRK04663 5 QGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQ-------LP-ED---VELHSGGWNL-EWLLEADLV 72 (438)
T ss_pred cCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHH-------hh-cC---CEEEeCCCCh-HHhccCCEE
Confidence 45 789999999999999998854444 89999997653211110 00 11 1110 11122 335779988
Q ss_pred EEcCCCCccc----------ccccCHHHH--hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 241 SLHPVLDKTT----------YHLINKERL--ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 241 ~l~~pl~~~t----------~~li~~~~l--~~mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
+...--.+.+ ..++++..+ ..++...+-|-=+-|..-...-|...|+.
T Consensus 73 V~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 73 VTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 7764332221 123433333 33454566677778988888877777765
No 466
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.30 E-value=0.73 Score=41.39 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=32.6
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~ 200 (342)
+.|+++.|.|- |.||+.+|+.| ...|.+|+..++...
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~ 40 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQE 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 67999999998 99999999998 467999999988764
No 467
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.29 E-value=1.3 Score=42.90 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=32.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~ 201 (342)
.|.+|.|.|.|.||+..++. ++.+|+ +|++.++.++.
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~-Ak~~G~~~Vi~~~~~~~~ 222 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQG-ARMAKASRIIAIDINPAK 222 (368)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence 48899999999999999998 589999 79998887654
No 468
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.20 E-value=1.3 Score=43.01 Aligned_cols=32 Identities=16% Similarity=0.422 Sum_probs=25.2
Q ss_pred CeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcC
Q 019387 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL 197 (342)
Q Consensus 166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~ 197 (342)
.+|+|+| .|.+|+.+++.|...-.+++.++..
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~ 36 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAA 36 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence 5899998 9999999999985333558887733
No 469
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.19 E-value=0.81 Score=47.28 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=48.9
Q ss_pred CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh-hhccC------CC--CccccccCCHHHH
Q 019387 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LKANG------EQ--PVTWKRASSMDEV 233 (342)
Q Consensus 164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~------~~--~~~~~~~~~l~~l 233 (342)
.|+++.|.|- |.||+.+++.|+ ..|.+|.+++++.... ......+... +...+ .. ...+....++.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LL-k~G~~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELL-KLGFRVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 5789999996 999999999984 6799999998876532 1111110000 00000 00 0111122345667
Q ss_pred hhcCCEEEEcCCC
Q 019387 234 LREADVISLHPVL 246 (342)
Q Consensus 234 l~~aDiV~l~~pl 246 (342)
+.++|+|+.+...
T Consensus 157 LggiDiVVn~AG~ 169 (576)
T PLN03209 157 LGNASVVICCIGA 169 (576)
T ss_pred hcCCCEEEEcccc
Confidence 8899999888653
No 470
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=90.12 E-value=0.92 Score=43.84 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=23.2
Q ss_pred eEEEEecCHHHHHHHHHHHh-cC--CcEEEEEcC
Q 019387 167 TVGVIGAGRIGSAYARMMVE-GF--KMNLIYYDL 197 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~-af--g~~V~~~d~ 197 (342)
+|||.|+|+||+.+.|.|.. .| +.++++.+.
T Consensus 3 ~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind 36 (336)
T PRK13535 3 RVAINGFGRIGRNVLRALYESGRRAEITVVAINE 36 (336)
T ss_pred EEEEECcCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 79999999999999998642 23 456665543
No 471
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.06 E-value=0.97 Score=42.42 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=34.7
Q ss_pred ccccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 160 ~~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~ 200 (342)
+..+.|+++.|.|- |.||+.+|+.|+ .-|++|++.+++.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~ 75 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARRED 75 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence 46788999999996 999999999985 66999999998764
No 472
>PRK14851 hypothetical protein; Provisional
Probab=90.02 E-value=0.77 Score=48.57 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=29.4
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcC
Q 019387 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDL 197 (342)
Q Consensus 161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~ 197 (342)
..|.+++|+|+|+|.+|..+|..|+ ..|. ++..+|.
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~La-r~GVG~l~LvD~ 75 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMV-RTGIGRFHIADF 75 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHH-HhCCCeEEEEcC
Confidence 5689999999999999999999985 5565 5666663
No 473
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.96 E-value=1.3 Score=40.53 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=57.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH--hhcCCEE
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV--LREADVI 240 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--l~~aDiV 240 (342)
.|.++.|.|.|.+|+.+++. ++++|++ |++.++..+... ....+ +...... ...++. -...|++
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~-a~~~g~~~vi~~~~~~~~~~--~~~~~-------g~~~~~~---~~~~~~~~~~~~d~v 163 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQL-AKAAGAREVVGVDPDAARRE--LAEAL-------GPADPVA---ADTADEIGGRGADVV 163 (277)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCcEEEECCCHHHHH--HHHHc-------CCCcccc---ccchhhhcCCCCCEE
Confidence 47899999999999999998 5899999 888887654421 11111 1000000 000111 1247888
Q ss_pred EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
+.+....+ .-...++.++++..+++++-.
T Consensus 164 l~~~~~~~-----~~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 164 IEASGSPS-----ALETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred EEccCChH-----HHHHHHHHhcCCcEEEEEecc
Confidence 87765321 224567888999999988643
No 474
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.95 E-value=0.48 Score=47.17 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=66.2
Q ss_pred cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (342)
Q Consensus 163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l 242 (342)
+.++++.|+|+|..|.+.++.| +..|.+|.++|........... ..+. .......-.+.+...|+|+.
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~l--------~~g~---~~~~~~~~~~~~~~~d~vv~ 71 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDKL--------PENV---ERHTGSLNDEWLLAADLIVA 71 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHHH--------hcCC---EEEeCCCCHHHhcCCCEEEE
Confidence 4688999999999999999986 6889999999976532111100 0111 11110111234567887665
Q ss_pred cCCCCcccc----------cccCH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 243 HPVLDKTTY----------HLINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 243 ~~pl~~~t~----------~li~~-~~l~~-mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
..-..++.. .++.+ +.+.. ++...+-|-=+.|..-...-|.+.|+.
T Consensus 72 spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 72 SPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred CCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 432222211 12333 23332 333355566678888888877777765
No 475
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=89.90 E-value=1.3 Score=45.36 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=65.8
Q ss_pred ccCCCeEEEEec---CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (342)
Q Consensus 162 ~L~gktvgIvG~---G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a 237 (342)
.+.|++|+++|= |++..+++..+ ..|| ++|.+..|..-...+.+.+. +.. ....+....++++.++++
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~~----a~~---~G~~v~i~~d~~eav~~A 242 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVEK----MKK---NGFEVRIFSSIEEYLSQK 242 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHHH----HHH---cCCeEEEEcCHHHHhccC
Confidence 467999999998 68999999886 5798 99998877432111221111 111 112233457999999999
Q ss_pred CEE--EE-------cCCCC--c---c--cccccCHHHHhcCCCCcEEEEcC
Q 019387 238 DVI--SL-------HPVLD--K---T--TYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 238 DiV--~l-------~~pl~--~---~--t~~li~~~~l~~mk~ga~lINva 272 (342)
|+. .. .++.. + + -...++++.++.+|++++|.=+.
T Consensus 243 D~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 243 DVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred CccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 952 22 12111 0 0 13456889999999998887753
No 476
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.90 E-value=1.2 Score=42.98 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=48.4
Q ss_pred CeEEEEecCHHHHHHHHHHHhcC---CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC--CE
Q 019387 166 QTVGVIGAGRIGSAYARMMVEGF---KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DV 239 (342)
Q Consensus 166 ktvgIvG~G~IG~~vA~~l~~af---g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a--Di 239 (342)
-++||+|.|.|++..++.| ... +..|. ++||+.+.. . +++...+.. ....+.+.|+|++.. |+
T Consensus 7 ir~Gi~g~g~ia~~f~~al-~~~p~s~~~Ivava~~s~~~A-~-------~fAq~~~~~--~~k~y~syEeLakd~~vDv 75 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRAL-HTLPESNHQIVAVADPSLERA-K-------EFAQRHNIP--NPKAYGSYEELAKDPEVDV 75 (351)
T ss_pred eEEEEeehhHHHHHHHHHh-ccCcccCcEEEEEecccHHHH-H-------HHHHhcCCC--CCccccCHHHHhcCCCcCE
Confidence 3799999999999999987 433 56666 467754322 2 223333332 223468999999876 89
Q ss_pred EEEcCCCCc
Q 019387 240 ISLHPVLDK 248 (342)
Q Consensus 240 V~l~~pl~~ 248 (342)
|.+..|...
T Consensus 76 Vyi~~~~~q 84 (351)
T KOG2741|consen 76 VYISTPNPQ 84 (351)
T ss_pred EEeCCCCcc
Confidence 998887543
No 477
>PRK08324 short chain dehydrogenase; Validated
Probab=89.89 E-value=0.93 Score=47.98 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=34.5
Q ss_pred cccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 161 ~~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
..+.||++.|.| .|.||+.+|+.| ...|.+|++.+++.+.
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA 458 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence 457899999999 599999999998 5779999999988653
No 478
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=89.79 E-value=1 Score=40.43 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=32.5
Q ss_pred ccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~ 200 (342)
.+.++++.|.| .|.+|+.+++.|+ ..|.+|++.+++..
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~-~~g~~V~~~~r~~~ 41 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLA-ADGAEVIVVDICGD 41 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 36789999999 7999999999985 66999999988754
No 479
>PRK10083 putative oxidoreductase; Provisional
Probab=89.75 E-value=1.6 Score=41.33 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=55.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhc-CCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh----cC
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EA 237 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~a-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~----~a 237 (342)
.|.+|.|.|.|.+|+.+++. +++ +|++ |++.++.+++. +. ...+ +....-.....++.+.+. +.
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~-a~~~~G~~~v~~~~~~~~~~-~~-~~~~-------Ga~~~i~~~~~~~~~~~~~~g~~~ 229 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQV-LKGVYNVKAVIVADRIDERL-AL-AKES-------GADWVINNAQEPLGEALEEKGIKP 229 (339)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHhCCCCEEEEEcCCHHHH-HH-HHHh-------CCcEEecCccccHHHHHhcCCCCC
Confidence 47899999999999999988 475 6996 66677765432 11 1111 111000001123444432 23
Q ss_pred CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
|+++-+... +. .-.+.++.++++..+|+++..
T Consensus 230 d~vid~~g~-~~----~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 230 TLIIDAACH-PS----ILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred CEEEECCCC-HH----HHHHHHHHhhcCCEEEEEccC
Confidence 567666542 11 124557888899999998753
No 480
>PRK07985 oxidoreductase; Provisional
Probab=89.58 E-value=1.4 Score=41.40 Aligned_cols=35 Identities=26% Similarity=0.152 Sum_probs=30.1
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~ 198 (342)
+.||++.|.|- |.||+.+|+.|+ ..|++|+..++.
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~-~~G~~Vi~~~~~ 82 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYA-REGADVAISYLP 82 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEecCC
Confidence 78899999995 899999999985 679999887654
No 481
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.56 E-value=1.4 Score=41.81 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=57.4
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh-------------HHHHH-HhhhhhhhhccCCCCcccc----cc
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-------------RLEKF-VTAYGQFLKANGEQPVTWK----RA 227 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~----~~ 227 (342)
+|.|||.|.+|.++++.|+ ..|. ++...|...-+ ...+. .+.....+..-. +...+. ..
T Consensus 1 kVlVVGaGGlG~eilknLa-l~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~n-p~v~I~~~~~~i 78 (291)
T cd01488 1 KILVIGAGGLGCELLKNLA-LSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRV-PGVNVTPHFGKI 78 (291)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHC-CCCEEEEEeccc
Confidence 5899999999999999985 4565 67777743211 00000 000000111100 011110 11
Q ss_pred CC-HHHHhhcCCEEEEcCCCCcccccccCHHHHhcC-----CCCcEEEEcCC
Q 019387 228 SS-MDEVLREADVISLHPVLDKTTYHLINKERLATM-----KKEAILVNCSR 273 (342)
Q Consensus 228 ~~-l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~m-----k~ga~lINvaR 273 (342)
.+ -++.+++.|+|+.++. +.+++..+|+...+.. +.+.-+|..+-
T Consensus 79 ~~~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt 129 (291)
T cd01488 79 QDKDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGT 129 (291)
T ss_pred CchhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEE
Confidence 12 2578899999999885 5678888887765544 23345666653
No 482
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=89.54 E-value=1 Score=40.88 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=32.8
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~ 200 (342)
.+.||++.|.|- |.||+.+|+.|+ .-|++|++.++...
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence 478999999995 999999999985 67999999988764
No 483
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=89.52 E-value=2.2 Score=41.23 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=58.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHh-----hc
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVL-----RE 236 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll-----~~ 236 (342)
.|++|.|.|-|.+|+.+++. ++++|. .|++.+..+.+. +. ...+ +.... +. ...++.+.+ ..
T Consensus 186 ~g~~vlI~g~g~vG~~~~~l-a~~~G~~~v~~~~~~~~k~-~~-~~~~-------g~~~~-i~~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMA-AKIAGCTTIIAVDIVDSRL-EL-AKEL-------GATHV-INPKEEDLVAAIREITGGG 254 (365)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHHH-HH-HHHc-------CCcEE-ecCCCcCHHHHHHHHhCCC
Confidence 47899999999999999988 589999 588888765432 11 1111 11100 00 111222222 34
Q ss_pred CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (342)
Q Consensus 237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG 274 (342)
.|+|+-|+... . .-...++.++++..+|.++..
T Consensus 255 ~d~vld~~g~~----~-~~~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 255 VDYALDTTGVP----A-VIEQAVDALAPRGTLALVGAP 287 (365)
T ss_pred CcEEEECCCCc----H-HHHHHHHHhccCCEEEEeCcC
Confidence 78888887521 1 124568888999999988754
No 484
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.51 E-value=0.95 Score=43.30 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=56.2
Q ss_pred eEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhc-cCCCCccc-c
Q 019387 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKA-NGEQPVTW-K 225 (342)
Q Consensus 167 tvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~~-~ 225 (342)
+|.|||.|.+|.++++.|+ ..|. ++..+|...-+ +.+... ..+.. ........ .
T Consensus 1 kVlIVGaGGlG~EiaKnLa-l~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa----~~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLV-LTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAK----EAVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHH-HhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHH----HHHHHHCCCCeEEEEe
Confidence 5899999999999999985 5566 67777743211 000000 00111 00000100 0
Q ss_pred -ccC---CHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387 226 -RAS---SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (342)
Q Consensus 226 -~~~---~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva 272 (342)
... ...+.+++.|+|+.++. +.+++..+|+..... +.-+|+.+
T Consensus 76 ~~i~~~~~~~~f~~~~DvVv~a~D-n~~ar~~in~~c~~~---~ip~I~~g 122 (312)
T cd01489 76 ANIKDPDFNVEFFKQFDLVFNALD-NLAARRHVNKMCLAA---DVPLIESG 122 (312)
T ss_pred ccCCCccchHHHHhcCCEEEECCC-CHHHHHHHHHHHHHC---CCCEEEEe
Confidence 111 13478899999999985 567788888766553 44566654
No 485
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=89.45 E-value=1.8 Score=41.45 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=58.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccC------CHHHHh-
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRAS------SMDEVL- 234 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~l~~ll- 234 (342)
.|++|.|.|.|.+|+.+++. ++.+|+ +|++.++...... +...+ +.... ...... .+.++.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~l-ak~~G~~~v~~~~~~~~~~~--~~~~~-------g~~~vi~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAA-AKLAGARRVIVIDGSPERLE--LAREF-------GADATIDIDELPDPQRRAIVRDITG 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHHH--HHHHc-------CCCeEEcCcccccHHHHHHHHHHhC
Confidence 58899999999999999998 589999 8998887654321 11111 11100 000000 122222
Q ss_pred -hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 235 -~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
...|+++-+.... ..-...++.++++..+|.++.
T Consensus 247 ~~~~d~vid~~g~~-----~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 247 GRGADVVIEASGHP-----AAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCCCcEEEECCCCh-----HHHHHHHHHhccCCEEEEEcC
Confidence 2468888776421 112456788888889988864
No 486
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=89.45 E-value=4.9 Score=41.31 Aligned_cols=174 Identities=15% Similarity=0.116 Sum_probs=108.0
Q ss_pred CCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh-
Q 019387 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE- 186 (342)
Q Consensus 108 ~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~- 186 (342)
..|.+.|+--. .+|-.+++-+|+..|-. |..|...++.|+|.|.-|-.+|+.|..
T Consensus 264 ~~i~~FnDDiQ---GTaaV~lAgll~Alr~~---------------------g~~l~d~riv~~GAGsAgiGia~ll~~~ 319 (559)
T PTZ00317 264 NKYRCFNDDIQ---GTGAVIAAGFLNALKLS---------------------GVPPEEQRIVFFGAGSAAIGVANNIADL 319 (559)
T ss_pred cCCCEecccch---hHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence 34777776553 45666788888887632 356889999999999999999998743
Q ss_pred --cCCc-------EEEEEcCCch---hH---HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC--CEEEEcCCCCcc
Q 019387 187 --GFKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKT 249 (342)
Q Consensus 187 --afg~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a--DiV~l~~pl~~~ 249 (342)
..|. +++.+|...- .+ +..+...|. +...... .....+|.|+++.. |+++=+- .
T Consensus 320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa---~~~~~~~--~~~~~~L~e~v~~~KPtvLIG~S----~ 390 (559)
T PTZ00317 320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFA---RTDISAE--DSSLKTLEDVVRFVKPTALLGLS----G 390 (559)
T ss_pred HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHh---ccccccc--cccCCCHHHHHhccCCCEEEEec----C
Confidence 2466 7888887631 11 222222221 1110000 00135899999999 9987542 1
Q ss_pred cccccCHHHHhcCCC---CcEEEEcCCCcc---cCHHHHHHHHHcCC-ceEEEEe---cC----CCCC---CCccccccc
Q 019387 250 TYHLINKERLATMKK---EAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLD---VF----EVTE---LGFSSFKHI 312 (342)
Q Consensus 250 t~~li~~~~l~~mk~---ga~lINvaRG~~---vd~~aL~~aL~~g~-i~~aaLD---V~----~~EP---~~~~~tPhi 312 (342)
..+.|+++.++.|.+ ..++.=.|.-.- ...++.+++ .+|+ |.+.|.. |. ...| .|.++.|-+
T Consensus 391 ~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~-T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGi 469 (559)
T PTZ00317 391 VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKW-TNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGV 469 (559)
T ss_pred CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhh-ccCCEEEEECCCCCCcccCCeeeccCcCcceeeccch
Confidence 248999999999984 788887776653 233334443 2344 4444442 11 1333 678888877
Q ss_pred ccc
Q 019387 313 STQ 315 (342)
Q Consensus 313 a~~ 315 (342)
+-.
T Consensus 470 glG 472 (559)
T PTZ00317 470 GLG 472 (559)
T ss_pred hhh
Confidence 543
No 487
>PTZ00188 adrenodoxin reductase; Provisional
Probab=89.36 E-value=2.2 Score=43.43 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=51.9
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-------------HHHHHHhhhhhhhhccCCC---Ccccc
Q 019387 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------------RLEKFVTAYGQFLKANGEQ---PVTWK 225 (342)
Q Consensus 162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~---~~~~~ 225 (342)
.-..++|+|||-|.-|-..|+.|++..|.+|..|++.+.. ........|...+...+.. ...+-
T Consensus 36 ~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG 115 (506)
T PTZ00188 36 EAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG 115 (506)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec
Confidence 3458899999999999999986555569999999877542 1111111221111111110 11111
Q ss_pred ccCCHHHHhhcCCEEEEcCCC
Q 019387 226 RASSMDEVLREADVISLHPVL 246 (342)
Q Consensus 226 ~~~~l~~ll~~aDiV~l~~pl 246 (342)
...+++++..+.|.|++++-.
T Consensus 116 ~Dvt~eeL~~~YDAVIlAtGA 136 (506)
T PTZ00188 116 VDLKMEELRNHYNCVIFCCGA 136 (506)
T ss_pred CccCHHHHHhcCCEEEEEcCC
Confidence 224688888899999988653
No 488
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=88.96 E-value=0.97 Score=41.91 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=45.6
Q ss_pred eEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------hc-CC
Q 019387 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE-AD 238 (342)
Q Consensus 167 tvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~~-aD 238 (342)
+|.|.|- |.+|+.+++.| ..-|.+|.+..|+++..... ........+...+++.+++ .. +|
T Consensus 1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~~~~~----------~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d 69 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSSSAGP----------NEKHVKFDWLDEDTWDNPFSSDDGMEPEIS 69 (285)
T ss_pred CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCccccCC----------CCccccccCCCHHHHHHHHhcccCcCCcee
Confidence 3677887 99999999997 46689999998876532100 0000111233345677777 45 89
Q ss_pred EEEEcCCCC
Q 019387 239 VISLHPVLD 247 (342)
Q Consensus 239 iV~l~~pl~ 247 (342)
.|+++.|..
T Consensus 70 ~v~~~~~~~ 78 (285)
T TIGR03649 70 AVYLVAPPI 78 (285)
T ss_pred EEEEeCCCC
Confidence 999887754
No 489
>PLN02827 Alcohol dehydrogenase-like
Probab=88.96 E-value=2.2 Score=41.61 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=56.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCcccccc---CCHHH----Hhh
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDE----VLR 235 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~----ll~ 235 (342)
.|++|.|.|.|.+|..+++. ++++|++ |++.+..++.. +. ...+ +... .+... .+..+ +..
T Consensus 193 ~g~~VlV~G~G~vG~~~iql-ak~~G~~~vi~~~~~~~~~-~~-a~~l-------Ga~~-~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQG-AKLRGASQIIGVDINPEKA-EK-AKTF-------GVTD-FINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEECCCHHHH-HH-HHHc-------CCcE-EEcccccchHHHHHHHHHhC
Confidence 48999999999999999998 5899984 77787665432 11 1111 1100 01000 12222 221
Q ss_pred -cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCC
Q 019387 236 -EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR 273 (342)
Q Consensus 236 -~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaR 273 (342)
..|+|+-+.... . .+ ...++.+++| ..+|.++-
T Consensus 262 ~g~d~vid~~G~~-~---~~-~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 262 GGADYSFECVGDT-G---IA-TTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCCCEEEECCCCh-H---HH-HHHHHhhccCCCEEEEECC
Confidence 478888776521 1 12 3457778887 88877764
No 490
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.94 E-value=1.4 Score=42.37 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=58.3
Q ss_pred eEEEEec-CHHHHHHHHHHHhcCCc-------EEEEEcCCchh-HHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhc
Q 019387 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLRE 236 (342)
Q Consensus 167 tvgIvG~-G~IG~~vA~~l~~afg~-------~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~ 236 (342)
+|+|||. |.+|+.+|-.|+ ..|. ++..+|..... ....... .+........ ......+..+.+++
T Consensus 5 KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~----Dl~~~~~~~~~~~~i~~~~~~~~~d 79 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAM----ELEDCAFPLLAGVVATTDPEEAFKD 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHH----HHhhccccccCCcEEecChHHHhCC
Confidence 7999999 999999998763 3343 79999985421 1111100 0111000000 01112355577899
Q ss_pred CCEEEEcCCCC--c-cccc--------ccC--HHHHhcCCC-CcEEEEcCCCcccCHHH
Q 019387 237 ADVISLHPVLD--K-TTYH--------LIN--KERLATMKK-EAILVNCSRGPVIDEVA 281 (342)
Q Consensus 237 aDiV~l~~pl~--~-~t~~--------li~--~~~l~~mk~-ga~lINvaRG~~vd~~a 281 (342)
||+|+++.-.. + +|+- ++. ...+....+ .++++.++ +.+|.-.
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 99999885432 1 2221 111 123344444 88999986 5555544
No 491
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=88.94 E-value=1.7 Score=43.55 Aligned_cols=124 Identities=16% Similarity=0.262 Sum_probs=72.9
Q ss_pred eEEEEecCHHHHH--HHHHHH---hcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387 167 TVGVIGAGRIGSA--YARMMV---EGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (342)
Q Consensus 167 tvgIvG~G~IG~~--vA~~l~---~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV 240 (342)
+|.|||-|.. .. +.+-|+ ..++ -+|..+|..++. ++. ...+...+..+...+..+....+.++++.+||||
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~r-l~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfV 78 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAER-QEK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADFV 78 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHH-HHH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEE
Confidence 7899999986 33 222221 1344 689999998743 222 2222122222222345666778999999999999
Q ss_pred EEcCCCCc-----------ccccccCH----------------------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387 241 SLHPVLDK-----------TTYHLINK----------------------ERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (342)
Q Consensus 241 ~l~~pl~~-----------~t~~li~~----------------------~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~ 287 (342)
++..-..- .-+|+++. +.+....|++.+||++-.--+-..++.+.+.
T Consensus 79 i~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~~~ 158 (437)
T cd05298 79 FAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRLFP 158 (437)
T ss_pred EEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHCC
Confidence 88764332 12344431 2344556899999998877666666665533
Q ss_pred cCCceE
Q 019387 288 QNPMFR 293 (342)
Q Consensus 288 ~g~i~~ 293 (342)
..++.|
T Consensus 159 ~~kviG 164 (437)
T cd05298 159 NARILN 164 (437)
T ss_pred CCCEEE
Confidence 334433
No 492
>PRK08628 short chain dehydrogenase; Provisional
Probab=88.90 E-value=1.1 Score=40.69 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=33.1
Q ss_pred cccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 161 ~~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
..+.|+++.|.| -|.||+.+|+.|+ ..|++|.+.++.++.
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~-~~G~~v~~~~r~~~~ 43 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLA-EEGAIPVIFGRSAPD 43 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHH-HcCCcEEEEcCChhh
Confidence 357899999999 5789999999985 679999988876643
No 493
>PRK07326 short chain dehydrogenase; Provisional
Probab=88.82 E-value=1.3 Score=39.58 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=32.0
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
+.|+++.|.|- |.||+.+++.|+ ..|.+|++.++.+..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~ 42 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKE 42 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHH
Confidence 45789999985 999999999985 569999999987643
No 494
>PRK06949 short chain dehydrogenase; Provisional
Probab=88.80 E-value=1.3 Score=40.01 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=33.6
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~ 201 (342)
.+.||++.|.|- |.||+.+|+.| ...|++|++.+++.+.
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l-~~~G~~Vi~~~r~~~~ 45 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVL-AQAGAKVVLASRRVER 45 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 478999999996 99999999998 4679999999887643
No 495
>PRK08589 short chain dehydrogenase; Validated
Probab=88.69 E-value=1.1 Score=41.32 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=31.3
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (342)
Q Consensus 163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~ 198 (342)
+.||++.|.|- |.||+++|+.|+ .-|++|++.++.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~-~~G~~vi~~~r~ 39 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIA 39 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCc
Confidence 67999999998 789999999985 679999999887
No 496
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=88.68 E-value=9 Score=37.43 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=82.0
Q ss_pred eCCCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCC-C-C---HHHHHHHhC-CCceEEEecCCCCccHHHHHHhh
Q 019387 10 WNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTI-L-S---VEDIIALIG-DKCDGVIGQLTEDWGETLFAALS 83 (342)
Q Consensus 10 ~~~~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~-~-~---~~e~~~~~~-~~~d~vi~~~~~~~~~e~l~~l~ 83 (342)
-.|+...+|++|++-..+.+.+.|++.|.++...+.-+.. . . -++....+. +.+|.++..+..-+. .+++.+.
T Consensus 6 ~~pL~g~rIlvtr~~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~-~~~~~l~ 84 (381)
T PRK07239 6 SAPLAGFTVGVTAARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFR-GWVEAAD 84 (381)
T ss_pred CCCCCCcEEEEeccCCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHH-HHHHHHH
Confidence 3588899999998654455678899999988665332211 1 1 122223332 348888865432221 1222222
Q ss_pred cc-----------CCceEEEccccCCccChhHHHhCCeeEecCCCC-CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCC
Q 019387 84 RA-----------GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYD 151 (342)
Q Consensus 84 ~l-----------~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~-~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~ 151 (342)
.. ++|+. ++|-.- -+++.+.|+.+.-.|.. +++..++... .
T Consensus 85 ~~~~~~~~~~~l~~~~i~---aVG~~T--a~aL~~~G~~~~~~p~~~~~e~L~~~l~------------------~---- 137 (381)
T PRK07239 85 GWGLADELLEALSSARLL---ARGPKA--TGAIRAAGLREEWSPASESSAEVLEYLL------------------E---- 137 (381)
T ss_pred HcCChHHHHHHHcCCeEE---EECccH--HHHHHHcCCCCccCCCCCccHHHHHHHh------------------c----
Confidence 11 11332 233222 34577899987666543 3444444321 0
Q ss_pred CCCCCcccccccCCCeEEEEecC-----HHHHHHHHHHHhcCCcEEEEEcC
Q 019387 152 GWLPNLFVGNLLKGQTVGVIGAG-----RIGSAYARMMVEGFKMNLIYYDL 197 (342)
Q Consensus 152 ~w~~~~~~~~~L~gktvgIvG~G-----~IG~~vA~~l~~afg~~V~~~d~ 197 (342)
....|++|.|.-.| .....+++.| +..|++|.....
T Consensus 138 ---------~~~~g~~vli~~~~~~~~~~~~~~L~~~L-~~~G~~V~~~~v 178 (381)
T PRK07239 138 ---------EGVAGKRIAVQLHGATDEWEPLPEFLEAL-RAAGAEVVPVPV 178 (381)
T ss_pred ---------CCCCCCEEEEEcCCCccccCchHHHHHHH-HHCCCEEEEeCc
Confidence 12457899988665 3334688887 788887664433
No 497
>PRK07109 short chain dehydrogenase; Provisional
Probab=88.54 E-value=1.6 Score=41.93 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=32.6
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (342)
Q Consensus 162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~ 200 (342)
.+.++++.|.|- |.||+.+|+.|+ ..|++|+..+++.+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la-~~G~~Vvl~~R~~~ 43 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFA-RRGAKVVLLARGEE 43 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence 467899999996 899999999985 67999999988764
No 498
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=88.50 E-value=4.6 Score=40.59 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=66.4
Q ss_pred CeEEEEec-CHHHHHHHHHHHhc--CC------cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc
Q 019387 166 QTVGVIGA-GRIGSAYARMMVEG--FK------MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (342)
Q Consensus 166 ktvgIvG~-G~IG~~vA~~l~~a--fg------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 236 (342)
-+|+|+|. |++|..+|-.|+.. || -+++.+|...+.......+-.+....- . .. .....+-.+.+++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~-~-~~--v~i~~~~ye~~kd 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL-L-RE--VSIGIDPYEVFQD 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh-c-Cc--eEEecCCHHHhCc
Confidence 48999999 99999999876532 22 378889987754322222211111000 0 01 1111233567799
Q ss_pred CCEEEEcCCCCccccc------------ccCH--HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387 237 ADVISLHPVLDKTTYH------------LINK--ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (342)
Q Consensus 237 aDiV~l~~pl~~~t~~------------li~~--~~l~~-mk~ga~lINvaRG~~vd~~aL~~aL~~ 288 (342)
||+|++..-. +...+ ++.. ..+.. -.+.+++|.++ +.+|.-..+-.=.+
T Consensus 177 aDiVVitAG~-prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s 240 (444)
T PLN00112 177 AEWALLIGAK-PRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA 240 (444)
T ss_pred CCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 9999988643 22122 1211 23444 46789999997 66777665544333
No 499
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=88.49 E-value=2.5 Score=40.88 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=32.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (342)
Q Consensus 164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~ 201 (342)
.|.+|.|.|-|.||...++. ++.+|+ +|++.+++.++
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~-ak~~G~~~vi~~~~~~~~ 223 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQG-AKAAGASRIIGIDINPDK 223 (368)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence 48899999999999999998 589999 69888887654
No 500
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=88.42 E-value=3.1 Score=39.25 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=55.2
Q ss_pred CCCeEEEE--ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH----HHHhh--
Q 019387 164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR-- 235 (342)
Q Consensus 164 ~gktvgIv--G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~ll~-- 235 (342)
.|.++.|+ |.|.+|+.+++. ++.+|++|++.++++++.... ..+ +....-.....++ .++..
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~-a~~~G~~vi~~~~~~~~~~~~--~~~-------g~~~~i~~~~~~~~~~v~~~~~~~ 211 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRL-CKADGIKVINIVRRKEQVDLL--KKI-------GAEYVLNSSDPDFLEDLKELIAKL 211 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHH--HHc-------CCcEEEECCCccHHHHHHHHhCCC
Confidence 35566665 899999999997 589999999887765432111 111 1111000011122 22222
Q ss_pred cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (342)
Q Consensus 236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR 273 (342)
..|+++-++.. +. ....+..++++..+|.++.
T Consensus 212 ~~d~vid~~g~-~~-----~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 212 NATIFFDAVGG-GL-----TGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred CCcEEEECCCc-HH-----HHHHHHhhCCCCEEEEEEe
Confidence 47888877642 11 1345788889999888763
Done!