Query 019388
Match_columns 341
No_of_seqs 130 out of 1377
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 2.1E-40 7.3E-45 317.7 30.6 277 33-333 9-289 (549)
2 1v25_A Long-chain-fatty-acid-C 100.0 5.2E-39 1.8E-43 307.5 32.2 268 42-333 17-288 (541)
3 3ni2_A 4-coumarate:COA ligase; 100.0 4.6E-40 1.6E-44 314.5 24.9 284 21-330 4-289 (536)
4 3r44_A Fatty acyl COA syntheta 100.0 1.8E-39 6.2E-44 309.0 28.2 264 40-331 13-277 (517)
5 3o83_A Peptide arylation enzym 100.0 5.7E-39 1.9E-43 307.4 31.1 266 41-332 28-301 (544)
6 3ivr_A Putative long-chain-fat 100.0 5E-39 1.7E-43 305.6 30.3 261 41-330 4-266 (509)
7 3rix_A Luciferase, luciferin 4 100.0 2.1E-39 7.1E-44 310.9 27.1 281 34-330 11-299 (550)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 5.8E-39 2E-43 307.1 27.0 262 42-332 24-292 (539)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.5E-38 8.4E-43 300.4 28.1 251 42-330 1-262 (504)
10 1ry2_A Acetyl-coenzyme A synth 100.0 2.5E-38 8.4E-43 309.2 27.4 276 42-329 81-373 (663)
11 1pg4_A Acetyl-COA synthetase; 100.0 2.5E-38 8.4E-43 308.9 26.7 278 42-331 75-369 (652)
12 3etc_A AMP-binding protein; ad 100.0 9.4E-38 3.2E-42 300.9 30.1 271 39-329 52-333 (580)
13 3t5a_A Long-chain-fatty-acid-- 100.0 2.2E-38 7.6E-43 299.0 24.2 263 40-330 21-299 (480)
14 3c5e_A Acyl-coenzyme A synthet 100.0 2.8E-37 9.5E-42 297.1 32.0 268 40-329 35-314 (570)
15 4gr5_A Non-ribosomal peptide s 100.0 4.9E-38 1.7E-42 302.6 26.3 251 38-332 70-323 (570)
16 2d1s_A Luciferase, luciferin 4 100.0 1.4E-37 4.9E-42 297.9 27.9 266 43-329 25-300 (548)
17 2v7b_A Benzoate-coenzyme A lig 100.0 2.5E-37 8.6E-42 295.2 27.0 267 39-329 20-291 (529)
18 3rg2_A Enterobactin synthase c 100.0 4.4E-37 1.5E-41 298.6 29.0 264 41-333 25-295 (617)
19 3kxw_A Saframycin MX1 syntheta 100.0 9.8E-38 3.4E-42 301.9 23.8 264 40-332 8-280 (590)
20 3tsy_A Fusion protein 4-coumar 100.0 2.5E-37 8.4E-42 314.9 26.1 290 21-331 43-337 (979)
21 3fce_A D-alanine--poly(phospho 100.0 1.2E-37 4.1E-42 296.3 21.7 247 43-330 1-253 (512)
22 1amu_A GRSA, gramicidin synthe 100.0 7.2E-37 2.5E-41 293.8 26.5 248 42-328 38-289 (563)
23 4dg8_A PA1221; ANL superfamily 100.0 4.6E-37 1.6E-41 297.9 25.3 243 41-329 25-270 (620)
24 3ipl_A 2-succinylbenzoate--COA 100.0 4.1E-37 1.4E-41 291.8 22.3 265 44-330 2-269 (501)
25 4fuq_A Malonyl COA synthetase; 100.0 8.3E-37 2.9E-41 289.7 23.7 255 47-330 4-260 (503)
26 3e7w_A D-alanine--poly(phospho 100.0 1.5E-36 5.2E-41 288.6 25.5 245 43-329 1-251 (511)
27 3gqw_A Fatty acid AMP ligase; 100.0 3.3E-36 1.1E-40 290.3 27.6 264 34-331 12-289 (576)
28 3l8c_A D-alanine--poly(phospho 100.0 5.8E-36 2E-40 285.3 26.5 249 42-329 3-255 (521)
29 3ite_A SIDN siderophore synthe 100.0 9.7E-35 3.3E-39 279.3 26.1 263 39-327 16-287 (562)
30 2vsq_A Surfactin synthetase su 100.0 2.4E-34 8.3E-39 300.0 28.4 248 42-329 463-714 (1304)
31 3nyq_A Malonyl-COA ligase; A/B 100.0 2E-34 6.8E-39 273.5 17.0 240 40-330 19-261 (505)
32 4gs5_A Acyl-COA synthetase (AM 99.8 1.5E-19 5.1E-24 163.7 7.9 107 219-331 36-142 (358)
33 2y27_A Phenylacetate-coenzyme 99.6 7.6E-16 2.6E-20 143.1 12.2 115 216-332 86-202 (437)
34 3qov_A Phenylacetate-coenzyme 99.6 6.8E-16 2.3E-20 143.4 11.8 116 216-333 81-199 (436)
35 3hgu_A EHPF; phenazine, antibi 99.6 5E-16 1.7E-20 141.2 9.7 112 217-330 88-223 (369)
36 2y4o_A Phenylacetate-coenzyme 99.6 1.4E-15 4.8E-20 141.6 12.9 115 216-332 88-204 (443)
37 2y27_A Phenylacetate-coenzyme 93.7 0.82 2.8E-05 41.5 12.4 124 57-183 89-221 (437)
38 2y4o_A Phenylacetate-coenzyme 93.5 0.84 2.9E-05 41.5 12.2 124 57-183 91-223 (443)
39 3qov_A Phenylacetate-coenzyme 92.8 0.77 2.6E-05 41.7 10.8 123 58-183 86-217 (436)
40 3g7s_A Long-chain-fatty-acid-- 90.9 3.9 0.00013 38.2 13.6 108 218-329 32-141 (549)
41 3ivr_A Putative long-chain-fat 90.6 2.3 7.7E-05 39.4 11.6 100 218-329 19-120 (509)
42 3ipl_A 2-succinylbenzoate--COA 90.6 4.5 0.00015 37.2 13.6 122 56-183 161-285 (501)
43 3rix_A Luciferase, luciferin 4 90.5 1.3 4.5E-05 41.5 9.9 89 238-329 49-139 (550)
44 3ni2_A 4-coumarate:COA ligase; 90.0 2.9 0.0001 39.0 11.9 103 218-330 35-139 (536)
45 1v25_A Long-chain-fatty-acid-C 89.6 4.6 0.00016 37.7 12.8 102 218-327 31-134 (541)
46 4fuq_A Malonyl COA synthetase; 88.3 3.2 0.00011 38.4 10.6 86 238-326 27-114 (503)
47 3r44_A Fatty acyl COA syntheta 87.7 6.5 0.00022 36.4 12.4 100 218-327 29-130 (517)
48 1amu_A GRSA, gramicidin synthe 87.3 6.6 0.00023 36.8 12.3 95 218-324 52-148 (563)
49 1t5h_X 4-chlorobenzoyl COA lig 87.2 6.5 0.00022 36.2 12.0 99 218-326 15-117 (504)
50 3c5e_A Acyl-coenzyme A synthet 87.1 7.9 0.00027 36.4 12.7 103 218-327 56-161 (570)
51 3t5a_A Long-chain-fatty-acid-- 86.6 7.3 0.00025 35.4 12.0 107 218-328 37-148 (480)
52 2v7b_A Benzoate-coenzyme A lig 86.5 4.4 0.00015 37.6 10.5 99 218-328 36-136 (529)
53 1ry2_A Acetyl-coenzyme A synth 86.5 6.3 0.00021 37.9 11.8 100 218-322 95-196 (663)
54 1mdb_A 2,3-dihydroxybenzoate-A 85.9 14 0.00046 34.4 13.6 122 56-183 180-309 (539)
55 3etc_A AMP-binding protein; ad 85.6 7.7 0.00026 36.6 11.8 98 218-322 69-168 (580)
56 2d1s_A Luciferase, luciferin 4 85.2 5.1 0.00017 37.5 10.3 88 238-328 51-140 (548)
57 4gr5_A Non-ribosomal peptide s 83.9 8.6 0.00029 36.1 11.3 93 218-322 88-182 (570)
58 1pg4_A Acetyl-COA synthetase; 83.7 9 0.00031 36.7 11.4 99 218-322 89-189 (652)
59 3o83_A Peptide arylation enzym 83.2 8.7 0.0003 35.8 10.9 93 218-322 43-137 (544)
60 3hgu_A EHPF; phenazine, antibi 82.9 6.4 0.00022 34.5 9.4 123 57-183 90-242 (369)
61 3tsy_A Fusion protein 4-coumar 82.4 5.7 0.00019 40.1 9.9 101 218-328 74-176 (979)
62 3kxw_A Saframycin MX1 syntheta 81.4 14 0.00046 34.7 11.6 102 218-327 24-130 (590)
63 4dg8_A PA1221; ANL superfamily 81.0 13 0.00043 35.4 11.3 122 56-183 162-287 (620)
64 3l8c_A D-alanine--poly(phospho 80.0 12 0.00041 34.5 10.5 81 238-321 28-110 (521)
65 3e7w_A D-alanine--poly(phospho 78.9 15 0.00052 33.7 10.9 123 56-183 141-271 (511)
66 3fce_A D-alanine--poly(phospho 78.5 13 0.00043 34.3 10.2 90 218-319 14-105 (512)
67 3gqw_A Fatty acid AMP ligase; 78.2 16 0.00054 34.1 10.9 88 237-327 47-143 (576)
68 3rg2_A Enterobactin synthase c 77.5 34 0.0012 32.3 13.1 121 57-183 183-313 (617)
69 4gs5_A Acyl-COA synthetase (AM 74.4 18 0.00061 31.6 9.5 120 56-183 35-159 (358)
70 4b2g_A GH3-1 auxin conjugating 73.1 0.9 3.1E-05 43.1 0.7 33 216-248 95-128 (609)
71 3ite_A SIDN siderophore synthe 72.6 30 0.001 32.1 11.2 99 218-321 33-135 (562)
72 3tbh_A O-acetyl serine sulfhyd 71.6 21 0.00072 30.9 9.2 66 93-158 61-127 (334)
73 4epl_A Jasmonic acid-amido syn 69.6 1.1 3.8E-05 42.2 0.5 33 215-247 93-126 (581)
74 4eql_A 4-substituted benzoates 64.1 1.8 6.1E-05 40.9 0.7 33 216-248 89-122 (581)
75 3vc3_A Beta-cyanoalnine syntha 62.7 42 0.0014 29.2 9.3 65 94-158 77-142 (344)
76 3nyq_A Malonyl-COA ligase; A/B 61.0 71 0.0024 29.1 11.1 103 56-165 153-259 (505)
77 1z7w_A Cysteine synthase; tran 53.2 75 0.0025 27.1 9.2 65 94-158 57-122 (322)
78 4aec_A Cysteine synthase, mito 52.7 72 0.0024 28.7 9.2 64 94-157 165-229 (430)
79 3sr3_A Microcin immunity prote 51.0 57 0.002 28.2 8.1 61 98-158 9-88 (336)
80 2vsq_A Surfactin synthetase su 50.7 74 0.0025 33.2 10.2 82 238-322 488-571 (1304)
81 2q3b_A Cysteine synthase A; py 50.6 91 0.0031 26.4 9.3 65 93-158 57-122 (313)
82 4h1h_A LMO1638 protein; MCCF-l 50.4 59 0.002 28.0 8.1 61 98-158 8-87 (327)
83 3ist_A Glutamate racemase; str 49.2 61 0.0021 27.0 7.7 61 48-115 20-80 (269)
84 3tla_A MCCF; serine protease, 48.8 65 0.0022 28.4 8.1 61 98-158 39-118 (371)
85 4e5s_A MCCFLIKE protein (BA_56 45.3 71 0.0024 27.6 7.7 61 98-158 8-87 (331)
86 2egu_A Cysteine synthase; O-ac 45.2 1E+02 0.0035 26.0 8.8 64 94-158 56-120 (308)
87 4eez_A Alcohol dehydrogenase 1 45.2 92 0.0031 26.6 8.6 77 78-157 137-216 (348)
88 3dwg_A Cysteine synthase B; su 43.8 1.2E+02 0.0041 25.9 9.0 64 94-158 64-128 (325)
89 3uhf_A Glutamate racemase; str 43.1 42 0.0014 28.2 5.7 61 48-115 39-99 (274)
90 1y7l_A O-acetylserine sulfhydr 39.2 1.6E+02 0.0056 24.8 9.1 64 94-158 53-117 (316)
91 3l6b_A Serine racemase; pyrido 39.1 74 0.0025 27.6 6.9 56 103-159 77-132 (346)
92 3tqh_A Quinone oxidoreductase; 37.7 1E+02 0.0035 26.1 7.6 77 78-158 126-205 (321)
93 3out_A Glutamate racemase; str 37.3 71 0.0024 26.6 6.2 61 48-115 22-82 (268)
94 2jtq_A Phage shock protein E; 37.2 78 0.0027 20.5 5.4 46 76-128 22-67 (85)
95 3ju7_A Putative PLP-dependent 36.9 1.1E+02 0.0036 26.7 7.7 60 94-156 70-136 (377)
96 1eg5_A Aminotransferase; PLP-d 34.7 2.1E+02 0.0072 24.2 9.4 57 100-157 87-147 (384)
97 1zsy_A Mitochondrial 2-enoyl t 34.2 1.5E+02 0.005 25.5 8.2 78 78-156 140-223 (357)
98 2pqm_A Cysteine synthase; OASS 34.1 1.6E+02 0.0055 25.3 8.3 64 94-158 69-133 (343)
99 2v03_A Cysteine synthase B; py 33.7 2.1E+02 0.0072 24.0 9.3 64 94-158 52-116 (303)
100 3jv7_A ADH-A; dehydrogenase, n 33.5 1.6E+02 0.0054 25.1 8.2 78 78-158 143-225 (345)
101 3s2e_A Zinc-containing alcohol 32.8 1.5E+02 0.0051 25.2 7.9 77 78-158 140-219 (340)
102 2gzm_A Glutamate racemase; enz 32.8 88 0.003 25.9 6.2 61 47-114 17-77 (267)
103 2jfz_A Glutamate racemase; cel 32.6 63 0.0021 26.6 5.2 60 48-114 15-74 (255)
104 1ve1_A O-acetylserine sulfhydr 32.1 2.2E+02 0.0077 23.8 9.6 65 94-158 51-117 (304)
105 1o58_A O-acetylserine sulfhydr 31.4 2.3E+02 0.0077 23.8 8.7 51 108-158 70-120 (303)
106 2fsx_A RV0390, COG0607: rhodan 31.1 66 0.0023 23.7 4.7 49 88-136 66-115 (148)
107 1h2b_A Alcohol dehydrogenase; 30.8 1.6E+02 0.0055 25.3 7.8 63 93-158 176-240 (359)
108 1zuw_A Glutamate racemase 1; ( 30.5 96 0.0033 25.8 6.0 61 47-114 17-78 (272)
109 3goh_A Alcohol dehydrogenase, 30.0 1.4E+02 0.0049 25.0 7.2 73 77-154 115-190 (315)
110 3dzz_A Putative pyridoxal 5'-p 29.9 2.2E+02 0.0076 24.2 8.7 55 100-157 107-168 (391)
111 3ri6_A O-acetylhomoserine sulf 29.6 3E+02 0.01 24.4 9.5 60 107-166 101-163 (430)
112 1mdo_A ARNB aminotransferase; 28.8 2.5E+02 0.0084 24.0 8.8 55 98-156 75-134 (393)
113 4h27_A L-serine dehydratase/L- 28.4 1.4E+02 0.0049 25.9 7.0 56 105-160 95-150 (364)
114 1o69_A Aminotransferase; struc 28.3 2.4E+02 0.0081 24.4 8.6 57 98-157 68-130 (394)
115 3krt_A Crotonyl COA reductase; 28.3 1.6E+02 0.0056 26.3 7.6 77 78-157 199-281 (456)
116 3pc3_A CG1753, isoform A; CBS, 26.3 2.7E+02 0.0093 25.5 8.9 62 95-157 105-167 (527)
117 4eb5_A Probable cysteine desul 26.2 1.5E+02 0.0052 25.2 6.9 57 100-157 86-146 (382)
118 4eye_A Probable oxidoreductase 26.0 2.7E+02 0.0092 23.6 8.4 78 77-157 131-212 (342)
119 3two_A Mannitol dehydrogenase; 26.0 2.4E+02 0.0084 23.9 8.1 73 78-154 150-225 (348)
120 4b7c_A Probable oxidoreductase 25.9 2.9E+02 0.0098 23.3 8.5 61 95-157 143-203 (336)
121 3u7q_A Nitrogenase molybdenum- 25.7 2.6E+02 0.009 25.5 8.5 67 101-168 347-414 (492)
122 1y80_A Predicted cobalamin bin 25.5 2.3E+02 0.008 22.1 7.3 57 103-159 89-149 (210)
123 4dup_A Quinone oxidoreductase; 25.3 2.2E+02 0.0075 24.4 7.6 77 78-157 140-220 (353)
124 2vvt_A Glutamate racemase; iso 25.0 1.4E+02 0.0049 25.0 6.2 62 46-114 37-98 (290)
125 1gu7_A Enoyl-[acyl-carrier-pro 24.9 1.8E+02 0.0061 25.0 7.0 79 78-157 139-224 (364)
126 1elu_A L-cysteine/L-cystine C- 24.4 3.1E+02 0.011 23.2 8.6 10 237-246 229-238 (390)
127 2cf5_A Atccad5, CAD, cinnamyl 24.4 2.3E+02 0.0077 24.3 7.6 77 78-157 153-233 (357)
128 3ohp_A Hypoxanthine phosphorib 24.2 1.8E+02 0.006 22.3 6.1 22 76-97 7-28 (177)
129 2jfq_A Glutamate racemase; cel 24.2 3.1E+02 0.011 22.8 8.2 61 47-114 36-96 (286)
130 4hvk_A Probable cysteine desul 24.1 2E+02 0.0067 24.3 7.2 57 100-157 86-146 (382)
131 1zl0_A Hypothetical protein PA 24.0 2.3E+02 0.0078 24.1 7.2 61 98-158 13-89 (311)
132 1jbq_A B, cystathionine beta-s 23.3 3.5E+02 0.012 24.2 8.7 61 96-157 154-215 (435)
133 1urh_A 3-mercaptopyruvate sulf 23.1 1.3E+02 0.0043 24.9 5.5 47 88-134 72-120 (280)
134 2oho_A Glutamate racemase; iso 23.1 1.3E+02 0.0045 24.9 5.5 62 46-114 25-86 (273)
135 3fpc_A NADP-dependent alcohol 23.0 2E+02 0.0068 24.6 6.9 75 78-156 140-218 (352)
136 3ujp_A Mn transporter subunit; 22.9 1.1E+02 0.0036 26.1 5.0 67 102-170 189-260 (307)
137 2duw_A Putative COA-binding pr 22.8 1.6E+02 0.0054 21.6 5.4 51 102-153 71-121 (145)
138 2e7j_A SEP-tRNA:Cys-tRNA synth 22.8 3.4E+02 0.012 22.8 9.3 56 99-157 90-155 (371)
139 3n0r_A Response regulator; sig 22.8 3.2E+02 0.011 22.5 8.7 79 78-159 128-215 (286)
140 4a0s_A Octenoyl-COA reductase/ 22.8 2.1E+02 0.0071 25.5 7.2 75 78-155 191-271 (447)
141 2cvh_A DNA repair and recombin 22.6 2.3E+02 0.0079 21.8 6.8 51 98-149 16-70 (220)
142 4ej6_A Putative zinc-binding d 22.4 2.1E+02 0.0072 24.7 7.0 59 94-156 175-234 (370)
143 1b73_A Glutamate racemase; iso 22.3 1.4E+02 0.005 24.3 5.6 56 48-109 15-70 (254)
144 2c81_A Glutamine-2-deoxy-scyll 22.3 2.6E+02 0.0091 24.2 7.8 55 98-156 78-137 (418)
145 1uar_A Rhodanese; sulfurtransf 22.3 1.2E+02 0.0041 25.1 5.2 47 88-134 219-267 (285)
146 1ofu_X SULA, hypothetical prot 22.2 1.9E+02 0.0063 20.6 5.4 43 90-132 46-88 (119)
147 3a2k_A TRNA(Ile)-lysidine synt 22.1 4.2E+02 0.014 23.8 9.1 70 89-158 4-87 (464)
148 1e0c_A Rhodanese, sulfurtransf 22.1 1.3E+02 0.0044 24.6 5.3 47 88-134 67-115 (271)
149 1uuf_A YAHK, zinc-type alcohol 22.0 2E+02 0.0068 24.9 6.7 76 78-157 168-246 (369)
150 3d1p_A Putative thiosulfate su 21.9 1.7E+02 0.0057 21.0 5.4 53 76-128 61-117 (139)
151 1urh_A 3-mercaptopyruvate sulf 21.9 1.8E+02 0.0063 23.8 6.3 61 76-136 199-265 (280)
152 2wlr_A Putative thiosulfate su 21.8 1.4E+02 0.0047 26.6 5.8 61 76-136 170-238 (423)
153 1e0c_A Rhodanese, sulfurtransf 21.7 1.4E+02 0.0049 24.4 5.5 58 76-133 191-255 (271)
154 2d59_A Hypothetical protein PH 21.7 1.6E+02 0.0054 21.6 5.2 49 103-152 79-127 (144)
155 3frk_A QDTB; aminotransferase, 21.5 2.1E+02 0.0072 24.3 6.9 57 96-156 70-131 (373)
156 1t3i_A Probable cysteine desul 21.5 3.5E+02 0.012 23.2 8.4 14 236-249 238-251 (420)
157 4a2c_A Galactitol-1-phosphate 21.1 3.7E+02 0.013 22.6 9.0 62 93-158 152-214 (346)
158 1y81_A Conserved hypothetical 21.0 1.7E+02 0.0058 21.3 5.2 51 101-152 69-119 (138)
159 4d9i_A Diaminopropionate ammon 21.0 4.2E+02 0.014 23.2 9.4 55 106-160 115-169 (398)
160 2dwu_A Glutamate racemase; iso 20.9 99 0.0034 25.7 4.3 50 47-99 21-70 (276)
161 3ss7_X D-serine dehydratase; t 20.8 2.4E+02 0.0083 25.2 7.2 57 104-160 161-217 (442)
162 2jgn_A DBX, DDX3, ATP-dependen 20.7 2.8E+02 0.0096 21.0 8.9 90 86-183 32-124 (185)
163 1b9h_A AHBA synthase, protein 20.6 3.9E+02 0.013 22.7 8.6 53 98-154 74-131 (388)
164 2trc_P Phosducin, MEKA, PP33; 20.6 14 0.00046 29.9 -1.2 18 228-246 3-20 (217)
165 3aey_A Threonine synthase; PLP 20.3 2E+02 0.0069 24.7 6.4 55 105-159 79-134 (351)
166 3b8x_A WBDK, pyridoxamine 5-ph 20.1 4.1E+02 0.014 22.6 9.6 55 98-156 76-135 (390)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.1e-40 Score=317.73 Aligned_cols=277 Identities=19% Similarity=0.216 Sum_probs=235.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCC--CCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcC
Q 019388 33 DGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDG--KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110 (341)
Q Consensus 33 ~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~ 110 (341)
..+|..+.+..++.++|.+.++++|+++|+++. ++ ..+.++++||+||.++++++|+.|.++|+++||+|+++++
T Consensus 9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (549)
T 3g7s_A 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP 85 (549)
T ss_dssp CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 345555566789999999999999999999987 42 1334478999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHH
Q 019388 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE 190 (341)
Q Consensus 111 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 190 (341)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... .+..++.++..
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~------- 156 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE------- 156 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS-------
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC-------
Confidence 999999999999999999999999999999999999999999999998776665543322 35566665532
Q ss_pred hhhhCccceeHHHHHHcCCCCCCCCCCCC-CCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEE
Q 019388 191 AEELGVSCFSWEEFLQLGTLDCELPPKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 269 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (341)
...+.++..............+ +++++++|||||||.||||+++|+++.+++......+ ++..+|++
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 224 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI 224 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence 3456666655532223333344 8999999999999999999999999999999988877 88999999
Q ss_pred EEecChHHHHHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 270 FSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 270 l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
++.+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|++.....
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 289 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESS 289 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHS
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhh
Confidence 999999999999888889999999999876 9999999999999999999999999999876654
No 2
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.2e-39 Score=307.53 Aligned_cols=268 Identities=23% Similarity=0.267 Sum_probs=224.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++++|+++|+.+. ++ +..+++||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 22 2347899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++.+....+..... ..+.++.++.++..... ....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAPE----------GYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCCT----------TCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHh-hCCCccEEEEecCCCCc----------ccccH
Confidence 99999999999999999999999999999999999877665544332 22455666666543210 13456
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhh--hhhhhhccccCCCCcEEEEecChHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV--DQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
+++...... .....++++++++|||||||.||||++||++++.++... ...+ +++.+|++++.+|++|.+
T Consensus 161 ~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~ 232 (541)
T 1v25_A 161 EEALGEEAD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVN 232 (541)
T ss_dssp HHHCCSCCC---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHH
T ss_pred HHHhhccCC---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhh
Confidence 665443311 134567899999999999999999999999998776652 2333 778899999999999999
Q ss_pred HHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 280 DQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.....
T Consensus 233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 288 (541)
T 1v25_A 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST 288 (541)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc
Confidence 99778889999999999863 9999999999999999999999999999876543
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.6e-40 Score=314.53 Aligned_cols=284 Identities=17% Similarity=0.203 Sum_probs=230.5
Q ss_pred CCCcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCC
Q 019388 21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (341)
Q Consensus 21 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~ 100 (341)
..+.+++...+...+|. ..++.++|.+.++++|+++|+++. +++ +++||+||.++++++|++|.++|++
T Consensus 4 ~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 34455665555444433 478999999999999999999874 332 6899999999999999999999999
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEe
Q 019388 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (341)
Q Consensus 101 ~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (341)
+||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+....... ...++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES---DVKVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH---TCEEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc---CceEEEe
Confidence 9999999999999999999999999999999999999999999999999999999998776655443221 1245555
Q ss_pred ccCCchhhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhcc
Q 019388 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG 260 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~ 260 (341)
+.... ....+.++........+.....++++++++|||||||.||||++||+++++.+....... ...
T Consensus 150 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~ 217 (536)
T 3ni2_A 150 DSAPD-----------GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NPN 217 (536)
T ss_dssp SCCCT-----------TCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SCS
T ss_pred cCCCC-----------CccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-ccc
Confidence 43321 244566665543223344456789999999999999999999999999998877643321 011
Q ss_pred ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 261 ~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.++..+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++..
T Consensus 218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (536)
T 3ni2_A 218 LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP 289 (536)
T ss_dssp SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS
T ss_pred ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc
Confidence 26788999999999999999976 7889999999999876 9999999999999999999999999998653
No 4
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.8e-39 Score=309.03 Aligned_cols=264 Identities=20% Similarity=0.203 Sum_probs=218.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++|+++|+++. +. ..++||+||.++++++|+.|.++|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 56689999999999999999999875 32 268999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++.+.. ..
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999987765554332211 11111111111 11
Q ss_pred eHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
.+.+.........+.....++++++++|||||||.||||++||+++.+.+......+ +++.+|++++.+|++|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 224 (517)
T 3r44_A 150 SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVA 224 (517)
T ss_dssp HHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHH
T ss_pred cHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHH
Confidence 334444433333344556789999999999999999999999999999999988877 889999999999999999
Q ss_pred HHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
|+..++.+++.|+++++.+. ++..+++.|+++++|++.++|++++.|.+...
T Consensus 225 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 277 (517)
T 3r44_A 225 ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE 277 (517)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH
T ss_pred HHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc
Confidence 99885565569999999876 99999999999999999999999999987544
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=5.7e-39 Score=307.45 Aligned_cols=266 Identities=13% Similarity=0.121 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|.+.++++|+++|+++. + +++||+||.++++++|+.|.++|+++||+|+++++|++++++++|
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578999999999999999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh----hHHhhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
||+++|++++|+++.++.+++.+++++++++++|++..... ...............++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 99999999999999999999999999999999999987541 111222222344555666554321
Q ss_pred cceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 019388 197 SCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275 (341)
Q Consensus 197 ~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (341)
...+.++.... ..........++++++++|||||||.||||+++|+++.+++......+ ++..+|++++.+|+
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~ 241 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPA 241 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCc
Confidence 22344454443 222223456789999999999999999999999999999999988877 89999999999999
Q ss_pred HHHHHHHH--HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 276 AHIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 276 ~h~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
+|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++....
T Consensus 242 ~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 301 (544)
T 3o83_A 242 PHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ 301 (544)
T ss_dssp TSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT
T ss_pred ceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh
Confidence 99999984 7889999999999876 999999999999999999999999999887643
No 6
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=5e-39 Score=305.56 Aligned_cols=261 Identities=20% Similarity=0.249 Sum_probs=218.4
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|.+.++++||++|+.+. + +++||+||.++++++|++|.++|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4689999999999999999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.+++++++++++|++.+....+..... ....+..++.++.... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------C
Confidence 999999999999999999999999999999999999988766444432 3345666776664321 1
Q ss_pred HHHHHH-cCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 201 WEEFLQ-LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
+..+.. ............++++++++|||||||.||||++||+++.+.+......+ +++++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222 11223334556789999999999999999999999999999999988877 899999999999999999
Q ss_pred HHHHHHHHH-hcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 280 DQIIETHCI-HKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 280 g~~~~l~~l-~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
|+..++..+ ..|+++++..+++..+++.|+++++|++.++|+++..|++..
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 266 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA 266 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc
Confidence 998866544 455555555459999999999999999999999999998764
No 7
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.1e-39 Score=310.93 Aligned_cols=281 Identities=17% Similarity=0.214 Sum_probs=224.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCh
Q 019388 34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP 113 (341)
Q Consensus 34 ~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~ 113 (341)
+.+..+....|+.++|.+.++++|++++++... ++.. .+++||+||.++++++|++|.++|+++||+|+++++|++
T Consensus 11 ~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 86 (550)
T 3rix_A 11 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL 86 (550)
T ss_dssp CCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT
T ss_pred CCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc
Confidence 345566677899999999999999999986220 1111 168999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhh
Q 019388 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (341)
Q Consensus 114 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 193 (341)
++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+...... .+.+..++.++.....
T Consensus 87 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------- 158 (550)
T 3rix_A 87 QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKK-LPIIQKIIIMDSKTDY------- 158 (550)
T ss_dssp TTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHH-CTTCCEEEETTCSSCB-------
T ss_pred cHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhh-CCCcceEEEEcCCccc-------
Confidence 99999999999999999999999999999999999999999999877666554332 2556677776654321
Q ss_pred hCccceeHHHHHHcCCC-------CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCC
Q 019388 194 LGVSCFSWEEFLQLGTL-------DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~ 266 (341)
.....+.++...... ..+.....++++++++|||||||.||||++||+++...+......+ ...++..+
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~ 234 (550)
T 3rix_A 159 --QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPD 234 (550)
T ss_dssp --TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTT
T ss_pred --cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCC
Confidence 124556666543311 1112222457899999999999999999999999998887655431 11267789
Q ss_pred cEEEEecChHHHHHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 267 DTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 267 d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
|++++.+|++|.+|+..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++..
T Consensus 235 ~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 299 (550)
T 3rix_A 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST 299 (550)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC
T ss_pred cEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc
Confidence 999999999999999888889999999999876 9999999999999999999999999998754
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=5.8e-39 Score=307.08 Aligned_cols=262 Identities=16% Similarity=0.148 Sum_probs=217.5
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++++|+++|+.+. + +++||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh----hHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcc
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
|+++|++++|+++.++.+++.+++++++++++|++++... ..........+.++.++..+....
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999885321 111111112234445555443210
Q ss_pred ceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 019388 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (341)
+.++..............++++++++|||||||.||||++||+++.+.+......+ +++.+|++++.+|++|
T Consensus 163 ---~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 163 ---FLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (539)
T ss_dssp ---SEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred ---hhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccc
Confidence 11111111111123445678999999999999999999999999999998877777 8889999999999999
Q ss_pred HHHHHH--HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 278 ~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++....
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 292 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASS 292 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccc
Confidence 999974 8889999999999876 999999999999999999999999999987654
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.5e-38 Score=300.43 Aligned_cols=251 Identities=18% Similarity=0.235 Sum_probs=206.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
+.++.++|.+.++++||++|+.+. +++ +++||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 368999999999999999999864 322 7899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEE--cCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV--QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|+++|++++|+++.++.+++.+++++++++++|+ +.+..+.+.... ..++ ++.++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~~~------------------ 130 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIFLG------------------ 130 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEEGG------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEEec------------------
Confidence 9999999999999999999999999999999999 665444331211 1111 22222
Q ss_pred eHHHHHHcC-----CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccC--CCCcEEEEe
Q 019388 200 SWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSF 272 (341)
Q Consensus 200 ~~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 272 (341)
++.... ..........++++++++|||||||.||||++||+++.+.+......+ ++ ..+|++++.
T Consensus 131 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 131 ---DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp ---GTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred ---chhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 111110 111112345678999999999999999999999999999888876666 66 788999999
Q ss_pred cChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|++..
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 262 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAA 262 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhh
Confidence 99999999965 8889999999999875 9999999999999999999999999998865
No 10
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.5e-38 Score=309.19 Aligned_cols=276 Identities=18% Similarity=0.255 Sum_probs=223.2
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
.+++.++|++.++++|+++|+++. ++..+..+++||+||.++++++|+.|+ ++|+++||+|+++++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 468899999999999999999985 333445589999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh---------hHHhhCcccCCcccEEEEeccCCchhhHHh
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEA 191 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (341)
||+++|++++|+++.++.+++.++++++++++||+++.... .+.... ...+.++.+++++.......
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~~--- 233 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL-RETPGVRHVLVYRKTNNPSV--- 233 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHT-TSCTTCCEEEEECSSCCSSC---
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHH-HhCCCCceEEEEecCCCCcc---
Confidence 99999999999999999999999999999999999886532 122222 22245667777764321000
Q ss_pred hhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 019388 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 270 (341)
.........|.++........+.....++++++|+|||||||+||||+++|++++.++.. ....+ ++..+|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 308 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF 308 (663)
T ss_dssp CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred ccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence 000011345777765432223344557899999999999999999999999999877653 33445 788999999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..|++|++|... ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.|++.
T Consensus 309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 373 (663)
T 1ry2_A 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRA 373 (663)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTS
T ss_pred EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhc
Confidence 9999999999965 8899999999999863 789999999999999999999999998764
No 11
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.5e-38 Score=308.92 Aligned_cols=278 Identities=14% Similarity=0.214 Sum_probs=223.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.+++.++|++.++++||++|+++. ++..+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 457889999999999999999975 43344568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh---------hHHhhCcccC-CcccEEEEeccCCchhhHHh
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCC-LYLKTIVSFANVSSSQKKEA 191 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 191 (341)
|+++|++++|+++.++.+++.++++++++++||+++.... .+........ ..+..+++++.......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence 9999999999999999999999999999999999876431 1222211110 23566777654321000
Q ss_pred hhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHh-hhhhhhhhccccCCCCcEEE
Q 019388 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL-SVDQMFVVTGKVCSEEDTYF 270 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~-~~~~~~~~~~~~~~~~d~~l 270 (341)
........|++++.............++++++|+|||||||+||||+++|++++.++. .....+ ++..+|+++
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l 302 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW 302 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred -ccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 0001134677776544222333445679999999999999999999999999987764 344445 788999999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+..|++|++|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|++...
T Consensus 303 ~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 369 (652)
T 1pg4_A 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369 (652)
T ss_dssp ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG
T ss_pred EccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCc
Confidence 9999999999965 8899999999999863 78999999999999999999999999987543
No 12
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=9.4e-38 Score=300.86 Aligned_cols=271 Identities=13% Similarity=0.138 Sum_probs=224.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 39 ~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
|.......++|++.++++|+++|+++. + ..+..+++||+||.++++++|++|+++|+++||+|+++++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~-~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---D-DYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---E-SSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---c-CCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 345566779999999999999999976 3 234568999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh--hhHHhhCcccCCcc-cEEEEeccCCchhhHHhhhhC
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELG 195 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 195 (341)
+|||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+....... +.+ ..++.++....
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------- 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-GDIPLKKAKVGGDVL---------- 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-CSCCCEEEEESSSCC----------
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-CCcceEEEEeCCccc----------
Confidence 999999999999999999999999999999999999998765 4443332222 333 45556554321
Q ss_pred ccceeHHHHHHcCCCCCC-C---CCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 019388 196 VSCFSWEEFLQLGTLDCE-L---PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (341)
.++..+.+.+........ + ....++++++++|||||||.||||+++|.+++..+......+ ++..+|++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 135677777665422111 1 245789999999999999999999999999988877655544 7888999999
Q ss_pred ecChHHHHHHHH-HHHHHhcCceEEEec---CCHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 272 FLPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 272 ~~pl~h~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..|++|..+++. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.|++.
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 333 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE 333 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc
Confidence 999999999886 788999999999874 3999999999999999999999999999864
No 13
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.2e-38 Score=298.97 Aligned_cols=263 Identities=15% Similarity=0.175 Sum_probs=208.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++||++|+++....++..+.++++||+||.++++++|++|.++|+ +||+|+++++|++++++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~ 99 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF 99 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence 346799999999999999999999872111334556899999999999999999999996 9999999999999999999
Q ss_pred HHHHhcCCeEEeecC---CCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCC-cccEEEEeccCCchhhHHhhhhC
Q 019388 120 EACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL-YLKTIVSFANVSSSQKKEAEELG 195 (341)
Q Consensus 120 lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ 195 (341)
|||+++|++++|+++ .++.+++.+++++++++++|++.+....+......... ....++.++....
T Consensus 100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 169 (480)
T 3t5a_A 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDL---------- 169 (480)
T ss_dssp HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSCT----------
T ss_pred HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccccc----------
Confidence 999999999999999 78899999999999999999999887766554432211 1123333332110
Q ss_pred ccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCC------CcEE
Q 019388 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE------EDTY 269 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~------~d~~ 269 (341)
............++++++|+|||||||.||||++||+++.+++......+ ++.. +|++
T Consensus 170 -----------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 170 -----------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp -----------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred -----------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 01112233455778999999999999999999999999999998877776 5555 8999
Q ss_pred EEecChHHHHHHHH-HHHHHhcCceEEEec-----CCHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWR-----GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 270 l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
++.+|++|.+|+.. ++.++..|+++++.+ +++..+++.|+++++| +.++|+++..++...
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~ 299 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARR 299 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHH
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhh
Confidence 99999999999876 888999999999985 2889999999999999 899999999888653
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.8e-37 Score=297.11 Aligned_cols=268 Identities=14% Similarity=0.207 Sum_probs=221.7
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCCh
Q 019388 40 AGLESPWQFFCDSAKR-----IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCP 113 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~-----~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~~~~V~i~~~n~~ 113 (341)
....++.++|++.+++ +|+++|+.+. ++ .+..+++||+||.++++++|++|.+. |+++||+|+++++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456778999999998 9999999875 32 23457899999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhh
Q 019388 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (341)
Q Consensus 114 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 193 (341)
++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+..... ..+.++.++.++....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc--------
Confidence 9999999999999999999999999999999999999999999987766544332 2245556666654211
Q ss_pred hCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHH--HHhhhhhhhhhccccCCCCcEEEE
Q 019388 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EVLSVDQMFVVTGKVCSEEDTYFS 271 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~--~~~~~~~~~~~~~~~~~~~d~~l~ 271 (341)
.+...+++++.............++++++|+|||||||.||||+++|+ ++. ..... ..+ ++..+|++++
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~~ 252 (570)
T 3c5e_A 182 --DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMWT 252 (570)
T ss_dssp --TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEEE
T ss_pred --cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEEE
Confidence 013456666654422223345578999999999999999999999999 544 33333 444 7889999999
Q ss_pred ecChHHHHHHHH-HHHHHhcCceEEEec---CCHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 272 FLPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 272 ~~pl~h~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.+|++|.+|+.. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.|++.
T Consensus 253 ~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 314 (570)
T 3c5e_A 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ 314 (570)
T ss_dssp CCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS
T ss_pred cCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc
Confidence 999999999985 888999999999985 3999999999999999999999999999864
No 15
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.9e-38 Score=302.59 Aligned_cols=251 Identities=16% Similarity=0.160 Sum_probs=209.0
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHH
Q 019388 38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (341)
Q Consensus 38 ~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~ 117 (341)
......+++++|.+.++++||++|+++. + +++||+||.++++++|++|.++|+++||+|+++++|++++++
T Consensus 70 ~~~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 140 (570)
T 4gr5_A 70 RAPAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVV 140 (570)
T ss_dssp CCCCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred cCCccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence 3345689999999999999999999864 3 689999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcc
Q 019388 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
++|||+++|++++|+++.++.+++.+++++++++++|++......+ .....++..+...
T Consensus 141 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~------------- 199 (570)
T 4gr5_A 141 ALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA------------- 199 (570)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC----------------
T ss_pred HHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc-------------
Confidence 9999999999999999999999999999999999999998654322 1122222211110
Q ss_pred ceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 019388 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (341)
.............++++++++|||||||.||||++||+++.+.... ...+ ++..+|++++.+|++|
T Consensus 200 --------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 200 --------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTS
T ss_pred --------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccH
Confidence 0011122234457899999999999999999999999999876655 3333 7888999999999999
Q ss_pred HHHHHHHHHHHhcCceEEEecC---CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 278 IYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 278 ~~g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
..+...++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|++....
T Consensus 266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 323 (570)
T 4gr5_A 266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE 323 (570)
T ss_dssp STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh
Confidence 8887778889999999999863 899999999999999999999999999876543
No 16
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.4e-37 Score=297.93 Aligned_cols=266 Identities=18% Similarity=0.264 Sum_probs=215.5
Q ss_pred CCHHH-HHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 43 ESPWQ-FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 43 ~tl~~-~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.++.+ ++.+.++++ +++|+++. ++. +++||+||.++++++|+.|.++|+++||+|+++++|++++++++||
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la 96 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIA 96 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHH
T ss_pred CcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Confidence 58999 899999999 99999863 222 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++.+..+.+...... .+....++.++..... .+...|
T Consensus 97 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~ 166 (548)
T 2d1s_A 97 GLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVILDSKVDY---------RGYQCL 166 (548)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHH-STTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcC-CCCCCEEEEeCCcccc---------cccccH
Confidence 999999999999999999999999999999999999877655443221 1224456665532110 012346
Q ss_pred HHHHHcCCCC-CCCCCCC-----C-CCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 019388 202 EEFLQLGTLD-CELPPKK-----K-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274 (341)
Q Consensus 202 ~~~~~~~~~~-~~~~~~~-----~-~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (341)
+++....... .+..... + +++++++|||||||.||||++||+++.+.+......+. ..++..+|++++.+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p 244 (548)
T 2d1s_A 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVVP 244 (548)
T ss_dssp HHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECSC
T ss_pred HHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEecc
Confidence 6665543111 1111122 3 89999999999999999999999999998887655410 126788999999999
Q ss_pred hHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 275 LAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 275 l~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
++|.+|+.. ++.++ .|+++++.+. +++.+++.|+++++|+++++|++++.|++.
T Consensus 245 ~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 300 (548)
T 2d1s_A 245 FHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS 300 (548)
T ss_dssp TTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC
Confidence 999999987 56667 9999999875 999999999999999999999999999864
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.5e-37 Score=295.21 Aligned_cols=267 Identities=19% Similarity=0.227 Sum_probs=209.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 39 ~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
|....++.++|.+.++ +|+++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|+++++++
T Consensus 20 p~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 89 (529)
T 2v7b_A 20 PALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVA 89 (529)
T ss_dssp --CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHH
T ss_pred ccceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 3455679999999999 9999999864 2 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcc-cEEEEeccCCchhhHHhhhhCcc
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
+|||+++|++++|+++.++.+++.+++++++++++|++.+....+....... ... ..++.++..... ...
T Consensus 90 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~ 160 (529)
T 2v7b_A 90 FLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRL 160 (529)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------C
T ss_pred HHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------ccc
Confidence 9999999999999999999999999999999999999987665544332211 223 344444432110 001
Q ss_pred ceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHH-HHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 019388 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (341)
...++++..............++++++++|||||||.||||++||+++ ..........+ ++..+|++++.+|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 161 APLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLF 235 (529)
T ss_dssp CCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTT
T ss_pred ccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHH
Confidence 235666655332222334557899999999999999999999999999 66655544444 788999999999999
Q ss_pred HHHHHHH-HHHHHhcCceEEEec--CCHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 277 HIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 277 h~~g~~~-~l~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
|.+|+.. ++.++..|+++++.+ +++..+++.|+++++|+++++|+++..+++.
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 291 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS 291 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhC
Confidence 9999986 678999999999873 3999999999999999999999999998764
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=4.4e-37 Score=298.55 Aligned_cols=264 Identities=14% Similarity=0.147 Sum_probs=221.4
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|.+.++ ||++|+++. + +++||+||.++++++|++|.++|+++|++|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh----hHHhhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
||+++|++++|+++.++.+++.++++++++++++++..... ............+..+...+...
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 161 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSG------------ 161 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCS------------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccccc------------
Confidence 99999999999999999999999999999999999987541 11111111223444455544332
Q ss_pred cceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 019388 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (341)
...+.+...............++++++++|||||||.||||+++|+++.+.+......+ ++..+|++++.+|++
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 235 (617)
T 3rg2_A 162 -EHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA 235 (617)
T ss_dssp -TTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred -ccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence 12344444444333334556789999999999999999999999999999999988877 889999999999999
Q ss_pred HHHHHHH--HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 277 h~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++.....
T Consensus 236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 295 (617)
T 3rg2_A 236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEG 295 (617)
T ss_dssp SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTT
T ss_pred hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcc
Confidence 9999884 8889999999999876 9999999999999999999999999999876643
No 19
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=9.8e-38 Score=301.87 Aligned_cols=264 Identities=19% Similarity=0.179 Sum_probs=215.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++||++|+++. ++ +..+++||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 45689999999999999999999876 42 23479999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCC---ChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 120 EACNSQAITYVPLYDTL---GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
|||+++|++++|+++.. ..+++.++++.+++++++++.+....+........+....+..+..
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIAL-------------- 148 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEG--------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeec--------------
Confidence 99999999999999987 4578999999999999999987655443322111111111111111
Q ss_pred cceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 019388 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (341)
+.+..............++++++++|||||||.||||++||+++.+++......+ ++..+|++++.+|++
T Consensus 149 -----~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 149 -----ESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH 218 (590)
T ss_dssp -----GGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred -----hhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence 0000000111223456789999999999999999999999999999999988877 889999999999999
Q ss_pred HHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 277 HIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 277 h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++.+..
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 280 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE 280 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh
Confidence 9999987 8889999999999863 789999999999999999999999999886543
No 20
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.5e-37 Score=314.87 Aligned_cols=290 Identities=19% Similarity=0.220 Sum_probs=227.8
Q ss_pred CCCcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCC
Q 019388 21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (341)
Q Consensus 21 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~ 100 (341)
..+.+|++..+...+| ...+++++|.+.++++||++|+++. ++. +++||+||.++++++|++|.++|++
T Consensus 43 ~~~~~~~~~~~~~~~p----~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~ 111 (979)
T 3tsy_A 43 NSDVIFRSKLPDIYIP----NHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVN 111 (979)
T ss_dssp --CCCBCCSSCCCCCC----TTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCceeecCCCCCCCC----CCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 3344555554433333 3489999999999999999999875 322 6899999999999999999999999
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEe
Q 019388 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (341)
Q Consensus 101 ~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (341)
+||+|+++++|++++++++|||+++|++++|+++.++.+++.++++++++++||++.+..+.+....... ...++.+
T Consensus 112 ~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~ 188 (979)
T 3tsy_A 112 QNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD---GVVIVCI 188 (979)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS---CCEEEEC
T ss_pred CcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC---CceEEEe
Confidence 9999999999999999999999999999999999999999999999999999999998765544432211 2234555
Q ss_pred ccCCchhhHHhhhhCccceeHHHHHHcCCC---CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhh
Q 019388 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~ 257 (341)
+..... ........+.++...... ..+.....++++++|+|||||||.||||+++|+++++.+.......
T Consensus 189 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~- 261 (979)
T 3tsy_A 189 DDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE- 261 (979)
T ss_dssp CCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSS-
T ss_pred CCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhh-
Confidence 432110 001123344444332211 2233456789999999999999999999999999998877654321
Q ss_pred hccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 258 VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 258 ~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
....++..+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++...
T Consensus 262 ~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 337 (979)
T 3tsy_A 262 NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337 (979)
T ss_dssp SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence 01126778999999999999999976 7889999999999876 99999999999999999999999999987654
No 21
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.2e-37 Score=296.25 Aligned_cols=247 Identities=16% Similarity=0.186 Sum_probs=205.4
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.++.++|++.++++|+++|+++. + +++||+||.++++++|++|.++|+++|++|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR----D-----AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC----C-----ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999875 3 68999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHH
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 202 (341)
+++|++++|+++.++.+++.+++++++++++|++....... ....++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~---------~~~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD---------LPVRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC---------CSSEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc---------cccceechh------------------hhh
Confidence 99999999999999999999999999999999986432110 001111111 122
Q ss_pred HHHHcC--CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 203 EFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 203 ~~~~~~--~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
...... ....+.....++++++++|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 222111 122233455789999999999999999999999999999999887777 8899999999999999999
Q ss_pred HHHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++..
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 253 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA 253 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTST
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc
Confidence 9889999999999999873 8899999999999999999999999887543
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.2e-37 Score=293.81 Aligned_cols=248 Identities=19% Similarity=0.244 Sum_probs=204.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++++|+++|+++. + +++||+||.++++++|+.|.++|+++||+|+++++|++++++++||
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 108 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA 108 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++.+....+.... ....+..++...
T Consensus 109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~----------------- 166 (563)
T 1amu_A 109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT----------------- 166 (563)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST-----------------
T ss_pred HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh-----------------
Confidence 9999999999999999999999999999999999987554332211 111233332210
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
+ .............++++++++|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.+++
T Consensus 167 --~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~ 238 (563)
T 1amu_A 167 --I-KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDASV 238 (563)
T ss_dssp --T-TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHHH
T ss_pred --h-ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHHH
Confidence 0 000111112344678999999999999999999999999998888877766 88899999999999999999
Q ss_pred HHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
..++.+++.|+++++.+. ++..+++.|+++++|++.++|+++..|.+
T Consensus 239 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 289 (563)
T 1amu_A 239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP 289 (563)
T ss_dssp HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT
T ss_pred HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh
Confidence 888889999999999863 88999999999999999999999987753
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=4.6e-37 Score=297.88 Aligned_cols=243 Identities=16% Similarity=0.134 Sum_probs=205.2
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|++.++++||++|+.+. + +++||+||.++++++|++|.++|+++|++|+++++|++++++++|
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4579999999999999999999875 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.++++++++++++++....... ...... .+...
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~~~~~----------------- 149 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-PVRHL----------------- 149 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-EGGGC-----------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-eeccC-----------------
Confidence 9999999999999999999999999999999999776533211 011111 11100
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
.............++++++++|||||||.||||+++|+++.+.+.. ...+ ++..+|++++..|++|.++
T Consensus 150 -----~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~ 218 (620)
T 4dg8_A 150 -----PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA 218 (620)
T ss_dssp -----CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred -----CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence 0001112223456899999999999999999999999999887765 4444 7889999999999999999
Q ss_pred HHHHHHHHhcCceEEEec---CCHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 281 QIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..++.++..|+++++.+ +++..+++.|+++++|++.++|++++.|++.
T Consensus 219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 270 (620)
T 4dg8_A 219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL 270 (620)
T ss_dssp HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc
Confidence 988999999999999974 2999999999999999999999999999864
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.1e-37 Score=291.85 Aligned_cols=265 Identities=18% Similarity=0.198 Sum_probs=204.9
Q ss_pred CHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHH
Q 019388 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (341)
Q Consensus 44 tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 123 (341)
|+.++|.+.++++||++|+++. + +++||+||.++++++|++|.++ +|++|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999864 2 5899999999999999999986 89999999999999999999999
Q ss_pred hcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccc-eeHH
Q 019388 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC-FSWE 202 (341)
Q Consensus 124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ 202 (341)
++|++++|+++.++.+++.+++++++++++|++.+.......... ...+..+......... ......... ...+
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL---LDNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc---cccccccccccchh
Confidence 999999999999999999999999999999999876543321110 0111111110000000 000000000 0001
Q ss_pred HHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 203 EFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 203 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
...... ..........++++++++|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 111100 001122345789999999999999999999999999999999888777 88999999999999999999
Q ss_pred HHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
..++.++..|+++++.+. +++.+++.|+++++|++.++|++++.|++..
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 269 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQG 269 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHT
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcC
Confidence 988999999999999876 9999999999999999999999999998754
No 25
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.3e-37 Score=289.74 Aligned_cols=255 Identities=20% Similarity=0.313 Sum_probs=207.4
Q ss_pred HHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcC
Q 019388 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126 (341)
Q Consensus 47 ~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G 126 (341)
++|.+.++++|+++++..... ++ +++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 478889999999999885310 22 589999999999999999999999999999999999999999999999999
Q ss_pred CeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHH
Q 019388 127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ 206 (341)
Q Consensus 127 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (341)
++++|+++.++.+++.+++++++++++|++.+....+....... ...+..++.... ..+.....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV---GATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH---TCEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc---CceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987554433322211 113334332211 11222222
Q ss_pred cCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HH
Q 019388 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET 285 (341)
Q Consensus 207 ~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l 285 (341)
............++++++++|||||||.||||+++|+++.+++......+ +++.+|++++.+|++|.+|+.. ++
T Consensus 142 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~ 216 (503)
T 4fuq_A 142 GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASN 216 (503)
T ss_dssp TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHH
T ss_pred cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHH
Confidence 22222233456789999999999999999999999999999999988877 8999999999999999999876 78
Q ss_pred HHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 286 ~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.+++.|+++++.+. +++.+++.++ ++|+++++|+++..|++..
T Consensus 217 ~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~ 260 (503)
T 4fuq_A 217 VTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSP 260 (503)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCT
T ss_pred HHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCC
Confidence 88999999999876 9999999998 8999999999999998643
No 26
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.5e-36 Score=288.57 Aligned_cols=245 Identities=18% Similarity=0.242 Sum_probs=209.7
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCChHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.++.++|.+.++++|+++|+.+. + +++||+||+++++++|++|.+. |.++|++|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999864 3 6899999999999999999875 888999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++........ . ... ....+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~---~---~~~----------------------~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAV---G---QQI----------------------QTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCC---C---CSS----------------------CEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhc---c---ccc----------------------ceecH
Confidence 9999999999999999999999999999999999765321110 0 000 12344
Q ss_pred HHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
+++.... ..........++++++++|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 4454433 222223345678999999999999999999999999999999887777 8889999999999999999
Q ss_pred HHHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.+++.
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 251 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD 251 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc
Confidence 9889999999999999863 889999999999999999999999998764
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.3e-36 Score=290.33 Aligned_cols=264 Identities=18% Similarity=0.206 Sum_probs=214.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCh
Q 019388 34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP 113 (341)
Q Consensus 34 ~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~ 113 (341)
..|.......++.++|++.++++|+.+++.. ..+..+++||+||.++++++|++|.++|+++||+|+++++|++
T Consensus 12 ~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~ 85 (576)
T 3gqw_A 12 SLPMRYADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSS 85 (576)
T ss_dssp --CCCCSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSH
T ss_pred CCCcccCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH
Confidence 4455556788999999999999999777643 2233478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeecCCCC-------hhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCch
Q 019388 114 EWIIAMEACNSQAITYVPLYDTLG-------ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS 186 (341)
Q Consensus 114 ~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (341)
++++++|||+++|++++|+++.++ .+++.+++++++++++|++++....+....... ..+ .++
T Consensus 86 ~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~-~~~-------- 155 (576)
T 3gqw_A 86 EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PEL-HVL-------- 155 (576)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTC-EEE--------
T ss_pred HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccc-eec--------
Confidence 999999999999999999999998 799999999999999999988766554433211 111 111
Q ss_pred hhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhh-hhhccccCCC
Q 019388 187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM-FVVTGKVCSE 265 (341)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~-~~~~~~~~~~ 265 (341)
...................++++++++|||||||.||||+++|+++++++...... + ++..
T Consensus 156 -------------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~ 217 (576)
T 3gqw_A 156 -------------SHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI-----KLRP 217 (576)
T ss_dssp -------------EHHHHHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS-----CCCT
T ss_pred -------------chhhhhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc-----CCCC
Confidence 11111111122223344568999999999999999999999999999988876543 4 7889
Q ss_pred CcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 266 ~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+.+.
T Consensus 218 ~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 289 (576)
T 3gqw_A 218 GDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVN 289 (576)
T ss_dssp TCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCC
T ss_pred cceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhc
Confidence 999999999999999986 7778999999998762 88999999999999999999999988875443
No 28
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.8e-36 Score=285.27 Aligned_cols=249 Identities=16% Similarity=0.145 Sum_probs=204.6
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|++.++++|+++|+.+. + +++||+||.++++++|++|.++|+++|++|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++.+....+. .. .++.+. .+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~~~~~~------------------~~ 126 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-SLVSLS------------------EI 126 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-EEEEHH------------------HH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-cccchh------------------hh
Confidence 9999999999999999999999999999999999886532211 11 111111 11
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
.................++++++++|||||||.||||++||+++.+.+....... ..++..++++++..|++|..++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 203 (521)
T 3l8c_A 127 ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFDLSV 203 (521)
T ss_dssp HHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSGGGH
T ss_pred hhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHHHHH
Confidence 1111111222233456789999999999999999999999999998877655431 1267889999999999999998
Q ss_pred HHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..++.++..|+++++.+. ++..+++.|.++++|++.++|+++..++..
T Consensus 204 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 255 (521)
T 3l8c_A 204 MYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS 255 (521)
T ss_dssp HHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS
T ss_pred HHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh
Confidence 888899999999999863 889999999999999999999999888754
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=9.7e-35 Score=279.28 Aligned_cols=263 Identities=16% Similarity=0.107 Sum_probs=205.1
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeeeeccCC----CCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH
Q 019388 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDG----KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE 114 (341)
Q Consensus 39 ~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~----~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~ 114 (341)
.....++.++|++.++++||++|+++. ++ ..+..+++||+||.++++++|+.|.+.|+ +||+|+++++|+++
T Consensus 16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~ 91 (562)
T 3ite_A 16 YTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI 91 (562)
T ss_dssp --CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH
T ss_pred ecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH
Confidence 355688999999999999999999875 32 22345789999999999999999999999 79999999999999
Q ss_pred HHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhh
Q 019388 115 WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194 (341)
Q Consensus 115 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 194 (341)
+++++|||+++|++++|+++.++.+++.+++++++++++|++++...... ......++..+
T Consensus 92 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~------------- 152 (562)
T 3ite_A 92 AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTK------------- 152 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETT-------------
T ss_pred HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeeccc-------------
Confidence 99999999999999999999999999999999999999999876543221 01112222211
Q ss_pred CccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhh---hccccCCCCcEEEE
Q 019388 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV---VTGKVCSEEDTYFS 271 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~ 271 (341)
...+.+...............++++++++|||||||.||||++||+++.+.+......+. .....+...+++++
T Consensus 153 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (562)
T 3ite_A 153 ---NQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229 (562)
T ss_dssp ---CHHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred ---chhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence 112223333222222334456788999999999999999999999999988877655431 11125778899999
Q ss_pred ecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 272 FLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 272 ~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
..|++|..++..++.++..|+++++.+. .++.+++.++++++|++.++|++++.+.
T Consensus 230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~ 287 (562)
T 3ite_A 230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTG 287 (562)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHT
T ss_pred ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcc
Confidence 9999999998888889999999998764 4678899999999999999999887653
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.4e-34 Score=300.01 Aligned_cols=248 Identities=17% Similarity=0.236 Sum_probs=208.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++++||++|+.+. + +++||+||.++++++|+.|.++|+++|++|+++++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999865 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|++|.++.+++.++++++++++++++.+....+... +.....+.+++...
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~~---------------- 592 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQTR---------------- 592 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGGG----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEeccccc----------------
Confidence 999999999999999999999999999999999998754432111 12223333332100
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
. . .....+.....++++++++|||||||+||||+++|+++.+. ......+ ++..+|++++..|++|..+.
T Consensus 593 --~-~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 662 (1304)
T 2vsq_A 593 --F-E-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAFT 662 (1304)
T ss_dssp --G-G-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHHH
T ss_pred --c-c-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHHH
Confidence 0 0 11112233457899999999999999999999999999876 3334444 78899999999999999998
Q ss_pred HHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|.+.
T Consensus 663 ~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~ 714 (1304)
T 2vsq_A 663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA 714 (1304)
T ss_dssp HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh
Confidence 889999999999999863 889999999999999999999999999764
No 31
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2e-34 Score=273.49 Aligned_cols=240 Identities=20% Similarity=0.251 Sum_probs=196.4
Q ss_pred CCCCCHHHHHHHHHHhCCC-CcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
.++.++.+.|.+.++++|+ ++|+.+. + +++||+||.++++++|..|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 4567888999999999987 9999864 3 68999999999999998874 478999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccc
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 198 (341)
++||+++|++++|+++.++.+++.+++++++++++|++.+.... .....+.. +.++..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~-~~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALER-VDVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEE-EECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhccccc-cccccc---------------
Confidence 99999999999999999999999999999999999998753210 00011111 111111
Q ss_pred eeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 019388 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (341)
.....+.....++++++++|||||||.||||+++|+++.+.+......+ ++..+|++++.+|++|.
T Consensus 143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 208 (505)
T 3nyq_A 143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV 208 (505)
T ss_dssp ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence 0111223445678999999999999999999999999999999988877 88999999999999999
Q ss_pred HHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 279 YDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 279 ~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..|++.+
T Consensus 209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~ 261 (505)
T 3nyq_A 209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETL 261 (505)
T ss_dssp HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhh
Confidence 99986 8899999999999875 999999999 889999999999999998743
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.78 E-value=1.5e-19 Score=163.68 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=96.0
Q ss_pred CCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEec
Q 019388 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (341)
Q Consensus 219 ~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~ 298 (341)
.+++++|+|||||||.||||++||+++.+++......+ +++++|++++.+|++|++|+..++.++..|+++++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 47899999999999999999999999999999988887 8999999999999999999998889999999999886
Q ss_pred CCHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
. ....++.|+++++|++.++|++++.|++...
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~ 142 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA 142 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc
Confidence 4 2234678999999999999999999987543
No 33
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.64 E-value=7.6e-16 Score=143.14 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=98.0
Q ss_pred CCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceE
Q 019388 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSI 294 (341)
Q Consensus 216 ~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~~ 294 (341)
...++++++++|||||||.||+|++||+++...+......+. ..+++.+|++++.+|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR--AAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 446789999999999999999999999999877655433211 1278899999999998 6888877788899999999
Q ss_pred EEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 295 GFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
++.+. +++.+++.|+++++|+++++|+++..|++....
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~ 202 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIER 202 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHH
Confidence 98775 999999999999999999999999999987654
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.64 E-value=6.8e-16 Score=143.45 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=97.3
Q ss_pred CCCC-CCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCce
Q 019388 216 PKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCS 293 (341)
Q Consensus 216 ~~~~-~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ 293 (341)
...+ +++++++|||||||.||+|++||+++.+.+......+. ..++..+|++++.+|++|..+... ++.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY--MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH--HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH--HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 88999999999999999999999999887766533221 127889999999999976666554 7888999999
Q ss_pred EEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 294 IGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 294 ~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
+++.+. ++..+++.|+++++|+++++|+++..|++.....
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 199 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEE 199 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHc
Confidence 998865 9999999999999999999999999999887654
No 35
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.63 E-value=5e-16 Score=141.18 Aligned_cols=112 Identities=17% Similarity=0.152 Sum_probs=90.0
Q ss_pred CCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceEE
Q 019388 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIG 295 (341)
Q Consensus 217 ~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~~v 295 (341)
..++++++++|||||||.||+|+++|+++...+......+ ...++..+|++++.+|+ +|.+|+...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGY--QHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTT--TTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhH--HhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 4678899999999999999999999999999888543221 11277889999999999 99999988777788999444
Q ss_pred EecCCHH-----------------------HHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 296 FWRGDVR-----------------------YLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
...+++. .+++.|+++++|++.++|+++..|++..
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~ 223 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRP 223 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhh
Confidence 3344776 7888999999999999999999998764
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.63 E-value=1.4e-15 Score=141.60 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=97.5
Q ss_pred CCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceE
Q 019388 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSI 294 (341)
Q Consensus 216 ~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~~ 294 (341)
...++++++++|||||||.||+|++||+++...+......+. ..++..+|++++.+|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR--AAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 346788999999999999999999999999877665443111 1278899999999999 5777777788889999999
Q ss_pred EEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 295 GFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
++.+. +++.+++.|+++++|+++++|+++..|++...+
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~ 204 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVR 204 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHH
Confidence 98875 999999999999999999999999999987654
No 37
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.66 E-value=0.82 Score=41.50 Aligned_cols=124 Identities=17% Similarity=0.091 Sum_probs=87.4
Q ss_pred CCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--hHHHHHHHHHHhcCCeEEee
Q 019388 57 PNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPL 132 (341)
Q Consensus 57 p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l 132 (341)
++..+.+.. ..|..| ...-+|.+.+...+..++..+...|+.+++++....+.+ ...+...++++..|+.+++.
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 455554443 134444 346789999998888888888788999999999988753 34455678889999998877
Q ss_pred cCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcc-----cCCcccEEEEeccC
Q 019388 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~ 183 (341)
.. ...+.+...+++.++.+++........+.+.... ....++.+++-+..
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 65 4788999999999999999888766655443211 12456666655544
No 38
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.50 E-value=0.84 Score=41.51 Aligned_cols=124 Identities=17% Similarity=0.065 Sum_probs=87.3
Q ss_pred CCCcceeeeeccCCCCcc--eEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--hHHHHHHHHHHhcCCeEEee
Q 019388 57 PNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPL 132 (341)
Q Consensus 57 p~~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l 132 (341)
++..+.+.. ..|..|. ...+|.+.+...+..++..+...|+.+++++....+-+ ...+...++++..|+.+++.
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 345554433 1444443 45789999998888888888788999999999988753 34455678888999998887
Q ss_pred cCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcc-----cCCcccEEEEeccC
Q 019388 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~ 183 (341)
.. ...+.+...+++.++.+++........+.+.... ....++.+++-++.
T Consensus 169 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 169 SG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 65 4788999999999999999888766555443211 12456666655544
No 39
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.82 E-value=0.77 Score=41.66 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=87.9
Q ss_pred CCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--hHHHHHHHHHHhcCCeEEeec
Q 019388 58 NNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPLY 133 (341)
Q Consensus 58 ~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~ 133 (341)
+.++.+.. ..|..| ....+|.+.+...+..++..+...|+.+++++....+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 44454443 134444 346789999999888888888888999999999988753 444556788899999988775
Q ss_pred CCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCccc-----CCcccEEEEeccC
Q 019388 134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-----CLYLKTIVSFANV 183 (341)
Q Consensus 134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~ 183 (341)
. ...+.+...+++.++.+++........+.+..... ...++.+++-++.
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 4 47788999999999999998887666554442211 2456666665544
No 40
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=90.90 E-value=3.9 Score=38.21 Aligned_cols=108 Identities=6% Similarity=-0.129 Sum_probs=80.8
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++....+.. .-..-.+|++.|...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~-~~~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFP-SEFPESMNFLEICEVTKKLASGISR--KGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCC-CSSCSEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCccc-ccccceeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEcc
Confidence 356777765432211 1123578999999999998886643 378899999999987643 233488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+. ..+.+...+++.++..+...+.....+.+.
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~ 141 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKPV 141 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHH
Confidence 75 788899999999999999998877766543
No 41
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=90.63 E-value=2.3 Score=39.41 Aligned_cols=100 Identities=9% Similarity=-0.053 Sum_probs=79.0
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++. .+-.+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLR--DGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEec
Confidence 467777764 23579999999999998887643 378899999999987643 233488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+. ..+.+...+++.++..+...+.....+.+.
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 120 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV 120 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHHhh
Confidence 75 788899999999999999998877665544
No 42
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=90.60 E-value=4.5 Score=37.21 Aligned_cols=122 Identities=11% Similarity=-0.009 Sum_probs=85.2
Q ss_pred CCCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH-HHHHHHHHHhcCCeEEee
Q 019388 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPL 132 (341)
Q Consensus 56 ~p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l 132 (341)
.++.++++.. ..|..| ....+|++.+...+...... .++.+++++....|-... .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4567776655 123333 44678999988776665543 478899999988876433 334467788889888876
Q ss_pred cCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccC
Q 019388 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (341)
+ ...++.+...+++.++.+++........+..........++.++.-++.
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 5 5789999999999999999998887776665544333356666555444
No 43
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=90.48 E-value=1.3 Score=41.53 Aligned_cols=89 Identities=9% Similarity=0.002 Sum_probs=72.6
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
..+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..+. ..+.+...++..++.+
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 125 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKR--YGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEeEHHHHHHHHHHHHHHHHH--hCCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeE
Confidence 479999999999988887643 378899999999987644 23347889999999998765 8889999999999999
Q ss_pred EeccchHHHHHHHH
Q 019388 316 FSGVPRVYDRIYTG 329 (341)
Q Consensus 316 ~~~~P~~~~~l~~~ 329 (341)
++........+.+.
T Consensus 126 vi~~~~~~~~~~~~ 139 (550)
T 3rix_A 126 VFVSKKGLQKILNV 139 (550)
T ss_dssp EEECGGGHHHHHHH
T ss_pred EEEcHHHHHHHHHH
Confidence 99998887766543
No 44
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=90.05 E-value=2.9 Score=38.96 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=79.3
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.++++... + +-.+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 35 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGA---N----GDVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETT---T----CCEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECC---C----CCEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEecc
Confidence 46777765422 2 2468999999999988886643 378899999999987643 333488899999998888
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+. ..+.+...++..++..+...+.....+.+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~ 139 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKDFA 139 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHH
Confidence 65 8889999999999999999888777665443
No 45
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=89.61 E-value=4.6 Score=37.68 Aligned_cols=102 Identities=4% Similarity=-0.188 Sum_probs=77.4
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.++++.... -....+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 31 ~p~~~a~~~~~~-----~~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHT-----GEVHRTTYAEVYQRARRLMGGLRA--LGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTT-----SCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecC-----CCCceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEEec
Confidence 356667654321 134579999999999988886633 378899999999987643 233488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
+. ..+.+...+++.++..+...+.....+.
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 75 7888999999999999999888765543
No 46
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=88.35 E-value=3.2 Score=38.41 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=69.4
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
-.+|++.|...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..+. ..+.+...+++.++..
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVA--RGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 468999999999988886643 378899999999987733 23348889999999998875 7888999999999999
Q ss_pred EeccchHHHHH
Q 019388 316 FSGVPRVYDRI 326 (341)
Q Consensus 316 ~~~~P~~~~~l 326 (341)
+...+.....+
T Consensus 104 vi~~~~~~~~~ 114 (503)
T 4fuq_A 104 VVCDPSKRDGI 114 (503)
T ss_dssp EEECGGGTTTT
T ss_pred EEECchhhHHH
Confidence 99887765443
No 47
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=87.65 E-value=6.5 Score=36.40 Aligned_cols=100 Identities=7% Similarity=-0.135 Sum_probs=76.9
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.. -+...+|++.|...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 29 ~p~~~A~~~~-------~~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 29 SPRLQAYVEP-------STDVRMTYAQMNALANRCADVLTA--LGIAKGDRVALLMPNSVE-FCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp STTSEEEEEG-------GGTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEeC-------CcCceeeHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEcCCCHH-HHHHHHHHHHhCcEEEec
Confidence 4567777642 123579999999999988886643 378899999999987633 233488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
+. ..+.+...+++.++.++...+.....+.
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSAPVID 130 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchHHHHH
Confidence 75 7888999999999999998877665443
No 48
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=87.27 E-value=6.6 Score=36.84 Aligned_cols=95 Identities=8% Similarity=0.012 Sum_probs=73.5
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++. .+-.+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 52 ~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVC---------ENEQLTYHELNVKANQLARIFIE--KGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEe---------CCceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEe
Confidence 456677653 12468999999999888876633 378899999999887643 233488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYD 324 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~ 324 (341)
+. ..+.+...+++.++..++..+....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 75 7788999999999999998876554
No 49
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=87.21 E-value=6.5 Score=36.22 Aligned_cols=99 Identities=16% Similarity=0.029 Sum_probs=73.7
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++... .+..+|++.+...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+..
T Consensus 15 ~p~~~a~~~~~-------~~~~~Ty~el~~~~~~~A~~L~~--~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVPA-------RGLRLTHAELRARVEAVAARLHA--DGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEETT-------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEcC-------CCceeEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEec
Confidence 45667765421 23579999999999988886643 3788999999999876443 33488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEec--cchHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSG--VPRVYDRI 326 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~--~P~~~~~l 326 (341)
+. ..+.+...+++.+++.+.. .+.....+
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 65 7888999999999999988 66655444
No 50
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=87.15 E-value=7.9 Score=36.38 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=77.4
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccc-cCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEE
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK-VCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 296 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~ 296 (341)
.++.+|++.... .| ....+|++.+...+..++..+. .. ++.++|++...+|-+..+ +..+++++..|+..+.
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~--~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vp 128 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLS--GACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMP 128 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHH--TTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHH--HccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEe
Confidence 456777765421 12 2367999999999988887652 23 678999999999876432 3347889999999888
Q ss_pred ecC--CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 297 WRG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 297 ~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
.+. ..+.+...+++.++..++..+.....+.
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 765 7888999999999999998887766543
No 51
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=86.62 E-value=7.3 Score=35.45 Aligned_cols=107 Identities=10% Similarity=0.008 Sum_probs=78.5
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.........-....+|++.+...+..++..+... +. ++|++...++-+..+ +..+++++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 467788765542211111347899999999999998877433 44 889999888876442 33488899999998887
Q ss_pred cC-----CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 298 RG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
+. ..+.+...+++.++..+...+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 53 46788899999999999999887776654
No 52
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=86.55 E-value=4.4 Score=37.63 Aligned_cols=99 Identities=4% Similarity=-0.111 Sum_probs=76.6
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.. +..+|+..+...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+..
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRT--LGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEec
Confidence 4566776521 2468999999999988886633 3788999999999876442 33478899999999887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
+. ..+.+...+++.++..+...+.....+.+
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 136 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQ 136 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHH
Confidence 65 78899999999999999998887665543
No 53
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=86.53 E-value=6.3 Score=37.91 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=75.9
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.... ..| ....+|++.|...+..++..+.. ..++.++|++...+|.+-- .+..+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~-~~Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTY-SMGVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHH-TSCCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEee
Confidence 457778765422 122 34579999999999988886631 2378899999999998744 233488899999988887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. .++.+...+++.++.+++.....
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 64 88999999999999999887654
No 54
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=85.87 E-value=14 Score=34.41 Aligned_cols=122 Identities=8% Similarity=-0.090 Sum_probs=83.5
Q ss_pred CCCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHH---HHHHHHhcCCeEE
Q 019388 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII---AMEACNSQAITYV 130 (341)
Q Consensus 56 ~p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~---~~lA~~~~G~~~v 130 (341)
.|+.++++.+ ..|..| ....+|.+.+...+......+ ++.+++++....|-...+-. .+++.+..|+.++
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVEVC---WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHHhh---CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4566776655 123333 456899999887776655443 67899999888887654433 4788889998888
Q ss_pred eecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhC---cccCCcccEEEEeccC
Q 019388 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANV 183 (341)
Q Consensus 131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~ 183 (341)
..+ ...++.+...+++.++.+++........+.+.. ......++.+++-+..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 664 567899999999999999998887665554332 1233566666655544
No 55
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=85.63 E-value=7.7 Score=36.57 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=75.8
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.... .| ....+|++.|...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+-.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~--~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVK--HGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeC
Confidence 567788876432 12 34679999999999988886643 3788999999999876442 33488899999999887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. ..+.+...+++.++..+...+..
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~~ 168 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAED 168 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESST
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecch
Confidence 65 88899999999999999886654
No 56
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=85.23 E-value=5.1 Score=37.47 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=70.8
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
..+|++.+...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+..+. ..+.+...+++.++..
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e~-~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 127 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQN--YGLVVDGRIALCSENCEEF-FIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSE
T ss_pred CEeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCchhH-HHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeE
Confidence 468999999999988886643 3788999999998876442 2347888999999888875 7889999999999999
Q ss_pred EeccchHHHHHHH
Q 019388 316 FSGVPRVYDRIYT 328 (341)
Q Consensus 316 ~~~~P~~~~~l~~ 328 (341)
++..+.....+.+
T Consensus 128 vi~~~~~~~~~~~ 140 (548)
T 2d1s_A 128 VFSSKKGLDKVIT 140 (548)
T ss_dssp EEECTTTHHHHHH
T ss_pred EEEcHHHHHHHHH
Confidence 9998887665543
No 57
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=83.91 E-value=8.6 Score=36.08 Aligned_cols=93 Identities=9% Similarity=0.007 Sum_probs=72.3
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++. .+-.+|++.+...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+..
T Consensus 88 ~pd~~A~~~---------~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 88 APDAVALLH---------EADELTYGALNERANRLAHRLVG--LGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTML 155 (570)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEC---------CCCcEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEc
Confidence 456777653 12369999999999988886643 3788999999999876443 33488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
+. ..+.+...+++.++..+......
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchh
Confidence 75 78889999999999998876543
No 58
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=83.68 E-value=9 Score=36.71 Aligned_cols=99 Identities=9% Similarity=0.079 Sum_probs=74.9
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++... ..+| ..-.+|++.|...+..++..+.. .++.++|++...+|.+.-+ +..+++++..|+..+..
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~--~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLD--LGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEec
Confidence 35677776432 2122 34579999999999988886643 3788999999999987443 33488899999998887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. .++.+...+++.++.+++.....
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 189 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITADEG 189 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESEE
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence 64 88999999999999999886543
No 59
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=83.22 E-value=8.7 Score=35.77 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=72.4
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++. .+-.+|++.|...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 43 ~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 43 HPHSLAIIC---------GERQLSYIELDRLSTNLATRLAE--KGLGKGDTALVQLPNVAE-FYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEECCCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEc---------CCCceeHHHHHHHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHHHHHHHHhCcEEecC
Confidence 467777763 24579999999999988886643 378899999999887633 233488899999988877
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. ..+.+...+++.++..+...+..
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 137 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQH 137 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTS
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEcccc
Confidence 64 78889999999999999877654
No 60
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=82.93 E-value=6.4 Score=34.51 Aligned_cols=123 Identities=11% Similarity=-0.014 Sum_probs=77.0
Q ss_pred CCCcceeeeeccCCCCcc--eEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--hHHHHHHHHHHhcCCeEEee
Q 019388 57 PNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPL 132 (341)
Q Consensus 57 p~~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l 132 (341)
++.++.+.. ..|..|. ...+|.+.+...+..++..+...|+.+++++..+.|-+ .......++++..|+.+++.
T Consensus 90 ~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 90 ADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp TTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred ccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 455555444 1344443 35678899988887777777778999999999998862 23344455568889866654
Q ss_pred cCCCChh-----------------------HHHHHhhcCceeEEEEcCCChhhHHhhCc---ccCCcccEEEEeccC
Q 019388 133 YDTLGAN-----------------------AVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 183 (341)
. +.+. .+...+++.++.+++........+.+... .....++.+++-+..
T Consensus 168 ~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 242 (369)
T 3hgu_A 168 D--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTE 242 (369)
T ss_dssp C--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSC
T ss_pred c--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCcc
Confidence 3 3333 66678999999999988866554433211 112345555555544
No 61
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=82.44 E-value=5.7 Score=40.15 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=77.6
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.-. + +..+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 74 ~pd~~Al~~~~---~----~~~~TY~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGP---T----GHVYTYSDVHVISRQIAANFHK--LGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETT---T----CCEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECC---C----CcEEEHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEee
Confidence 56778776422 2 2568999999999988886633 378899999999997733 333488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
+. .++.+...+++.++.++...+.....+.+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 176 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKIKP 176 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHH
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHH
Confidence 65 88889999999999999988876554433
No 62
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=81.42 E-value=14 Score=34.73 Aligned_cols=102 Identities=8% Similarity=0.012 Sum_probs=76.5
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.... -..-.+|++.|...+..++..+... ++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 24 ~p~~~a~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~--gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 24 SPNKKSCTFLNK-----ELEETMTYEQLDQHAKAIAATLQAE--GAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp CTTSEEEEEEET-----TEEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEEEcC-----CeeEEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchh-HHHHHHHHHHhCcEEEEe
Confidence 467777765431 1345799999999999888866433 78899999999987644 333478899999999887
Q ss_pred cC-----CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 298 RG-----DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
+. ..+.+...++..++..+...+.....+.
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 64 2356778889999999998887766654
No 63
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=80.98 E-value=13 Score=35.44 Aligned_cols=122 Identities=10% Similarity=0.063 Sum_probs=83.4
Q ss_pred CCCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHH-HHHHHHHHhcCCeEEee
Q 019388 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (341)
Q Consensus 56 ~p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l 132 (341)
.++.++++.+- .|..| ....+|++.+...+.. ....++.+++++....+-+... +..+++.+..|+..+..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 35777766551 34433 4467888887544322 2345788999999988775443 34467888888877765
Q ss_pred c-CCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccC
Q 019388 133 Y-DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (341)
+ ....++.+...+++.++.+++........+..........++.+++-++.
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 3 35678999999999999999988877766655444445667777666554
No 64
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=79.98 E-value=12 Score=34.54 Aligned_cols=81 Identities=9% Similarity=-0.061 Sum_probs=64.2
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
-.+|++.+...+..++..+.. .++.++|++...++-+.. .+..+++++..|+..+..+. ..+.+...++..++..
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~--~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDS--LALLAKSPVLVFGAQTYD-MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH--TCCCTTCCEEEEECSSHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 458999999999988886633 378889998888887643 23348889999999888765 8888999999999999
Q ss_pred Eeccch
Q 019388 316 FSGVPR 321 (341)
Q Consensus 316 ~~~~P~ 321 (341)
+.....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 887654
No 65
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=78.87 E-value=15 Score=33.73 Aligned_cols=123 Identities=8% Similarity=-0.053 Sum_probs=81.5
Q ss_pred CCCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHH-HHHHHHHHhcCCeEEee
Q 019388 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (341)
Q Consensus 56 ~p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l 132 (341)
.++.++++.+ ..|..| ....+|.+.+...+..+... .++.+++++....|-...+ +..+++++..|+.++..
T Consensus 141 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 3456666554 134444 44678999988776655443 4788999999888865443 44578888999988876
Q ss_pred cCC--CChhHHHHHhhcCceeEEEEcCCChhhHHhhC---cccCCcccEEEEeccC
Q 019388 133 YDT--LGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~ 183 (341)
... ..++.+...+++.++.+++........+.... ......++.++.-++.
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 553 56788999999999999998887665544332 1222445555555443
No 66
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=78.53 E-value=13 Score=34.27 Aligned_cols=90 Identities=4% Similarity=-0.003 Sum_probs=68.3
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++. ..-.+|++.+...+..++..+.. .+..++|++...++-+.. .+..+++++..|+..+..
T Consensus 14 ~p~~~A~~~---------~~~~~Ty~el~~~~~~lA~~L~~--~g~~~gd~V~i~~~n~~e-~~~~~la~~~~G~v~vpl 81 (512)
T 3fce_A 14 TPDQTAFVW---------RDAKITYKQLKEDSDALAHWISS--EYPDDRSPIMVYGHMQPE-MIINFLGCVKAGHAYIPV 81 (512)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--HSTTCCCCEEEEESSCHH-HHHHHHHHHHTTCCEEEE
T ss_pred CCCceEEEe---------CCceEEHHHHHHHHHHHHHHHHH--hCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEee
Confidence 456677653 12368999999999988886633 367889998888877643 233488899999988887
Q ss_pred cC--CHHHHHHHhhhhcCcEEecc
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGV 319 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~ 319 (341)
+. ..+.+...+++.++..+...
T Consensus 82 ~~~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 82 DLSIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp ETTSCHHHHHHHHHHSCCCEEEES
T ss_pred CCCCcHHHHHHHHHhcCCCEEEec
Confidence 65 78889999999999988765
No 67
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=78.18 E-value=16 Score=34.10 Aligned_cols=88 Identities=9% Similarity=-0.117 Sum_probs=69.5
Q ss_pred ceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--C-------HHHHHHH
Q 019388 237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--D-------VRYLMED 307 (341)
Q Consensus 237 ~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~-------~~~~~~~ 307 (341)
.-.+|++.|...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..+. . .+.+...
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~ 123 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLS--LNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL 123 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHH--TCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH
Confidence 3579999999999998886643 378899999999987643 23348889999999988754 2 5778889
Q ss_pred hhhhcCcEEeccchHHHHHH
Q 019388 308 IQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 308 i~~~~~t~~~~~P~~~~~l~ 327 (341)
++..++..+.........+.
T Consensus 124 l~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 124 LASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHHHCCSEEEECGGGHHHHH
T ss_pred HHhcCCCEEEecHHHHHHHH
Confidence 99999999998887665544
No 68
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=77.47 E-value=34 Score=32.31 Aligned_cols=121 Identities=14% Similarity=-0.004 Sum_probs=81.6
Q ss_pred CCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHH---HHHHHHhcCCeEEe
Q 019388 57 PNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII---AMEACNSQAITYVP 131 (341)
Q Consensus 57 p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~---~~lA~~~~G~~~v~ 131 (341)
++.++++.+ ..|..| ....+|.+.+...+......+ ++.+++++....|-...+-. .+++++..|+.++.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 466676555 133333 456899999887776665544 68899999999886554433 36788888888877
Q ss_pred ecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCc-----ccCCcccEEEEeccC
Q 019388 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP-----RCCLYLKTIVSFANV 183 (341)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~ 183 (341)
... .....+...+++.++.++.........+..... .....++.+++-++.
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 654 578888899999999999988866555443221 123456666555544
No 69
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=74.41 E-value=18 Score=31.60 Aligned_cols=120 Identities=13% Similarity=0.036 Sum_probs=75.2
Q ss_pred CCCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHH-HHHHHHHHhcCCeEEee
Q 019388 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (341)
Q Consensus 56 ~p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l 132 (341)
+.|.+|++.+- .|..| ....+|++.+...+..++.. .++.++|++...+|-...+ +..++..+..|+..+..
T Consensus 35 ~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~ 109 (358)
T 4gs5_A 35 LGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVT 109 (358)
T ss_dssp HHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEec
Confidence 44667766551 34444 44689999988776665544 4789999999888765433 44456667777777766
Q ss_pred cCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCc--ccCCcccEEEEeccC
Q 019388 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP--RCCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~ 183 (341)
.+... ....+++.++.++.........+.+... .....++.+++-+..
T Consensus 110 ~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~ 159 (358)
T 4gs5_A 110 EPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAP 159 (358)
T ss_dssp CCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSC
T ss_pred Ccccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccC
Confidence 65432 3456788899998887765555443321 123455555554443
No 70
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=73.07 E-value=0.9 Score=43.10 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=27.9
Q ss_pred CCCCCCeEEEEeCCCCC-CCccceeeecHHHHHH
Q 019388 216 PKKKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE 248 (341)
Q Consensus 216 ~~~~~~~a~i~~TSGsT-G~pK~V~~th~~l~~~ 248 (341)
-..++.+.++.-||||| |+||.|.+|...+-..
T Consensus 95 il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~ 128 (609)
T 4b2g_A 95 ILSAHPISEFLTSSGTSAGERKLMPTIQEELDRR 128 (609)
T ss_dssp SSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred ccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence 44677788999999999 8899999999987653
No 71
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=72.58 E-value=30 Score=32.14 Aligned_cols=99 Identities=11% Similarity=-0.042 Sum_probs=71.1
Q ss_pred CCCCeEEEEeCCCCCCCcc--ceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEE
Q 019388 218 KKTNISTIMYTSGTTGEPK--GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG 295 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK--~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v 295 (341)
.++.+|++... |..+..+ .-.+|++.|...+..++..+... +. ++|++...+|-+..+ +..+++++..|+..+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHA--SL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYV 107 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHT--TC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEE
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEE
Confidence 46777776442 2223222 35789999999999888866432 55 689999999877443 334888999999999
Q ss_pred EecC--CHHHHHHHhhhhcCcEEeccch
Q 019388 296 FWRG--DVRYLMEDIQELKPTMFSGVPR 321 (341)
Q Consensus 296 ~~~~--~~~~~~~~i~~~~~t~~~~~P~ 321 (341)
..+. ..+.+...+++.++..++....
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~ 135 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDN 135 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccc
Confidence 8875 7888999999999998876543
No 72
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=71.58 E-value=21 Score=30.95 Aligned_cols=66 Identities=6% Similarity=-0.014 Sum_probs=49.0
Q ss_pred HHHhCCC-CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 93 AMRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 93 ~L~~~g~-~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
.+.+.|. ++|+.|.+....+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3445554 78888655556677778888888888987666656555667778889999999999864
No 73
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=69.55 E-value=1.1 Score=42.24 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=27.9
Q ss_pred CCCCCCCeEEEEeCCCCC-CCccceeeecHHHHH
Q 019388 215 PPKKKTNISTIMYTSGTT-GEPKGVVLTNQAIVA 247 (341)
Q Consensus 215 ~~~~~~~~a~i~~TSGsT-G~pK~V~~th~~l~~ 247 (341)
.-..++.+.++.-||||| |++|.+++|...+-.
T Consensus 93 ~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 93 PILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 345677788999999999 789999999988765
No 74
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=64.08 E-value=1.8 Score=40.89 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=27.7
Q ss_pred CCCCCCeEEEEeCCCCC-CCccceeeecHHHHHH
Q 019388 216 PKKKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE 248 (341)
Q Consensus 216 ~~~~~~~a~i~~TSGsT-G~pK~V~~th~~l~~~ 248 (341)
-..++.+.+..-||||| |++|.+++|...+-..
T Consensus 89 iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 89 VISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp GTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred ccCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 34677788999999999 7899999999987553
No 75
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=62.73 E-value=42 Score=29.15 Aligned_cols=65 Identities=8% Similarity=0.024 Sum_probs=51.6
Q ss_pred HHhCC-CCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 94 L~~~g-~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
+.+.| +++|.+..+....+-.-..+.++|...|..+..+-|...+.+....++..++++++++..
T Consensus 77 a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 77 AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33444 577776667777888888999999999987776667777778888999999999998753
No 76
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=61.00 E-value=71 Score=29.13 Aligned_cols=103 Identities=8% Similarity=-0.058 Sum_probs=71.7
Q ss_pred CCCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHH--HHHHHHHHhcCCeEEe
Q 019388 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVP 131 (341)
Q Consensus 56 ~p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~ 131 (341)
.++.++++.+- .|..| ....+|.+.+...+..+...+ ++.+++++....|-...+ +..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45667766551 34433 446889999988887766655 678999988887764333 3347888889988876
Q ss_pred ecCCCChhHHHHHhhcCceeEEEEcCCChhhHHh
Q 019388 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165 (341)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 165 (341)
. +....+.+...+ +.++.+++........+..
T Consensus 228 ~-~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 L-GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp C-SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred C-CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 6 456777777777 6788888887766555444
No 77
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=53.24 E-value=75 Score=27.12 Aligned_cols=65 Identities=9% Similarity=0.101 Sum_probs=45.8
Q ss_pred HHhCC-CCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 94 L~~~g-~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
+.+.| +++|....+....+-.-..+.+++...|..++.+-|...+......++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34555 355644444455677777777888899987666655555566778889999999999864
No 78
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=52.67 E-value=72 Score=28.75 Aligned_cols=64 Identities=8% Similarity=0.054 Sum_probs=48.0
Q ss_pred HHhCCC-CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcC
Q 019388 94 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (341)
Q Consensus 94 L~~~g~-~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (341)
..+.|. .+|....+....+-.-..+.+++...|..++.+-|...+......++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 345564 6675555556668788888888999998776666666667778889999999999975
No 79
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=51.02 E-value=57 Score=28.24 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=41.2
Q ss_pred CCCCCCeEEEEcCCChH------HH-HHHHHHHhcCCeEEeecC------------CCChhHHHHHhhcCceeEEEEcCC
Q 019388 98 GVNPGDRCGIYGSNCPE------WI-IAMEACNSQAITYVPLYD------------TLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 98 g~~~~~~V~i~~~n~~~------~~-~~~lA~~~~G~~~v~l~~------------~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
-+++||+|++++|.+.- -+ .+.--+-..|..++.-.. ....++|...+.+-++++|+|...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 36899999999998742 12 222223346777664321 114577888899999999999884
No 80
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=50.69 E-value=74 Score=33.23 Aligned_cols=82 Identities=5% Similarity=-0.096 Sum_probs=64.7
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
-.+|++.|...+..++..+.. .+..++|++...++-+.. -+..+++++..|+..+-.+. ..+.+..++++.++.+
T Consensus 488 ~~lTY~eL~~~a~~lA~~L~~--~Gv~~g~~V~i~~~~s~~-~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~ 564 (1304)
T 2vsq_A 488 QTLSYRELDEEANRIARRLQK--HGAGKGSVVALYTKRSLE-LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAAC 564 (1304)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCE
T ss_pred eeEcHHHHHHHHHHHHHHHHh--cCcCCcCEEEEEeCCCHH-HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCE
Confidence 468999999999988886643 378899999999887633 22348889999999988865 6788888999999999
Q ss_pred EeccchH
Q 019388 316 FSGVPRV 322 (341)
Q Consensus 316 ~~~~P~~ 322 (341)
+...+..
T Consensus 565 vl~~~~~ 571 (1304)
T 2vsq_A 565 LLTHQEM 571 (1304)
T ss_dssp EEECSTT
T ss_pred EEECcch
Confidence 8876543
No 81
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=50.58 E-value=91 Score=26.43 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=44.9
Q ss_pred HHHhCCC-CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 93 AMRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 93 ~L~~~g~-~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
.+.+.|. ++|+.|.. ...+-.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 57 ~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 57 AAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 3444554 56666554 55666666677777899987666655555566677888999999999864
No 82
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=50.45 E-value=59 Score=27.99 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=40.9
Q ss_pred CCCCCCeEEEEcCCCh------H-HHHHHHHHHhcCCeEEeecCC------------CChhHHHHHhhcCceeEEEEcCC
Q 019388 98 GVNPGDRCGIYGSNCP------E-WIIAMEACNSQAITYVPLYDT------------LGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 98 g~~~~~~V~i~~~n~~------~-~~~~~lA~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
-+++||+|++++|.+. + +-.+.--+-..|..++.-..- ...+++...+.+-+++.|+|...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 3689999999999853 1 112222233567766643221 24678888999999999999874
No 83
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=49.21 E-value=61 Score=27.04 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=48.7
Q ss_pred HHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHH
Q 019388 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (341)
Q Consensus 48 ~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~ 115 (341)
++....+..|+...+... |+...++-.-|..++.+.+.+.++.|.+.|.+ .|.+.| |+...
T Consensus 20 v~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~---~IVIAC-NTa~~ 80 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK---MLVIAC-NTATA 80 (269)
T ss_dssp HHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS---EEEECC-HHHHH
T ss_pred HHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---EEEEeC-CCccH
Confidence 456666788999998888 88888888999999999999999999987764 455544 55554
No 84
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=48.79 E-value=65 Score=28.38 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=41.6
Q ss_pred CCCCCCeEEEEcCCChH------HHHHHH-HHHhcCCeEEeecC------------CCChhHHHHHhhcCceeEEEEcCC
Q 019388 98 GVNPGDRCGIYGSNCPE------WIIAME-ACNSQAITYVPLYD------------TLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 98 g~~~~~~V~i~~~n~~~------~~~~~l-A~~~~G~~~v~l~~------------~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
-+++||+|++++|.+.- -+-.-. -+-..|..++.-.. ....++|...+.+-++++|+|...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 57899999999998742 121222 23346777664322 124677888899999999999884
No 85
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=45.28 E-value=71 Score=27.57 Aligned_cols=61 Identities=7% Similarity=0.015 Sum_probs=41.3
Q ss_pred CCCCCCeEEEEcCCChH------HHHHHHH-HHhcCCeEEeecC------------CCChhHHHHHhhcCceeEEEEcCC
Q 019388 98 GVNPGDRCGIYGSNCPE------WIIAMEA-CNSQAITYVPLYD------------TLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 98 g~~~~~~V~i~~~n~~~------~~~~~lA-~~~~G~~~v~l~~------------~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
-+++||+|++++|.+.- -+-.-.. +-..|..++.-.. ....++|...+.+-++++|+|...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 36899999999998652 2222222 2346777664321 124677888899999999999884
No 86
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=45.18 E-value=1e+02 Score=25.99 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=43.5
Q ss_pred HHhCCC-CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 94 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 94 L~~~g~-~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
+.+.|. ++|+.|.. ...+-.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344453 56655544 55566666677777889986665555445566677789999999999864
No 87
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=45.17 E-value=92 Score=26.63 Aligned_cols=77 Identities=16% Similarity=0.104 Sum_probs=50.2
Q ss_pred EeHHHHHHHHHHHH---HHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEE
Q 019388 78 LTYQEVYDAAIRFG---SAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (341)
Q Consensus 78 ~Ty~el~~~~~~la---~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 154 (341)
+++.+......... ..++..++++|++|++...-+.-..++.++....|+.++.++.. ++. ..+.+..++..++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 67766544433322 23555689999999999876666777777777777777766542 333 4556677777777
Q ss_pred EcC
Q 019388 155 VQE 157 (341)
Q Consensus 155 ~~~ 157 (341)
...
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 544
No 88
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=43.78 E-value=1.2e+02 Score=25.92 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHhCC-CCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 94 L~~~g-~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
+.+.| +++++.|... ..+-.-..+.+++...|..++.+-|...+......++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 4566666554 4566777777788888987666656556667778889999999999874
No 89
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=43.06 E-value=42 Score=28.16 Aligned_cols=61 Identities=8% Similarity=-0.085 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHH
Q 019388 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (341)
Q Consensus 48 ~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~ 115 (341)
.+....+.-|+...+... |+..-++-.-+|.++.+.+.+.++.|.+.|.+ .|.+.| |+...
T Consensus 39 v~~~i~~~lP~e~~iy~~---D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d---~IVIAC-NTa~~ 99 (274)
T 3uhf_A 39 VLKSLYEARLFDEIIYYG---DTARVPYGVKDKDTIIKFCLEALDFFEQFQID---MLIIAC-NTASA 99 (274)
T ss_dssp HHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCS---EEEECC-HHHHH
T ss_pred HHHHHHHHCCCCCEEEEe---cCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---EEEEeC-CChhH
Confidence 355566678999888888 88888888899999999999999999877664 454444 55443
No 90
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=39.17 E-value=1.6e+02 Score=24.82 Aligned_cols=64 Identities=6% Similarity=-0.014 Sum_probs=44.0
Q ss_pred HHhCCC-CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 94 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 94 L~~~g~-~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
+.+.|. ++++.|.. ...+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 53 a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 444554 55555444 44576777777778889986665555545566777889999999999874
No 91
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=39.09 E-value=74 Score=27.58 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=40.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCC
Q 019388 103 DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK 159 (341)
Q Consensus 103 ~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 159 (341)
+.|.- ...+-.-..+.++|...|..++.+-|...+......++..++++++++...
T Consensus 77 ~~vv~-~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 77 KAVVT-HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp SCEEE-ECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEE-eCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 34333 345667777778888899866655565566677888999999999998754
No 92
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=37.66 E-value=1e+02 Score=26.07 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=47.4
Q ss_pred EeHHHHHHHHHHH---HHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEE
Q 019388 78 LTYQEVYDAAIRF---GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (341)
Q Consensus 78 ~Ty~el~~~~~~l---a~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 154 (341)
+++.+........ ...|...++++|++|++....+.--..+...+...|+.++.+. +.++ ...+++.++..++
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~i 201 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA---SKRN-HAFLKALGAEQCI 201 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE---CHHH-HHHHHHHTCSEEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe---ccch-HHHHHHcCCCEEE
Confidence 6777765443221 1334566899999999997555444444444456788766553 3444 5666778888776
Q ss_pred EcCC
Q 019388 155 VQEN 158 (341)
Q Consensus 155 ~~~~ 158 (341)
...+
T Consensus 202 ~~~~ 205 (321)
T 3tqh_A 202 NYHE 205 (321)
T ss_dssp ETTT
T ss_pred eCCC
Confidence 5443
No 93
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=37.30 E-value=71 Score=26.62 Aligned_cols=61 Identities=15% Similarity=0.009 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHH
Q 019388 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (341)
Q Consensus 48 ~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~ 115 (341)
.+....+.-|+...+... |...-++-.-+|.++.+.+.+.++.|.+.|.+ .|.+.| |+...
T Consensus 22 v~~~i~~~lp~~~~iy~~---D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~---~iVIAC-NTa~~ 82 (268)
T 3out_A 22 IVKNLMSILPNEDIIYFG---DIARIPYGTKSRATIQKFAAQTAKFLIDQEVK---AIIIAC-NTISA 82 (268)
T ss_dssp HHHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCS---EEEECC-HHHHH
T ss_pred HHHHHHHHCCCCcEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---EEEEeC-CChHH
Confidence 345555678888888877 77788888899999999999999999987764 455544 55443
No 94
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=37.17 E-value=78 Score=20.50 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=34.1
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCe
Q 019388 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128 (341)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~ 128 (341)
..+.+.++.+. +.+.+..+++.|.+++..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 56777776543 33446678889999999988888888888888863
No 95
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=36.92 E-value=1.1e+02 Score=26.74 Aligned_cols=60 Identities=10% Similarity=-0.069 Sum_probs=38.0
Q ss_pred HHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecC-----CCChhHHHHHhhcCc--eeEEEEc
Q 019388 94 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD-----TLGANAVEFIINHAE--VSIAFVQ 156 (341)
Q Consensus 94 L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~vi~~ 156 (341)
|...++++||.|.+-.+....+ .-++...|+.++.++. ....+++...++..+ .++|+..
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 3344678999988876655443 3445677887666543 246777887774334 7777744
No 96
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=34.67 E-value=2.1e+02 Score=24.23 Aligned_cols=57 Identities=4% Similarity=-0.048 Sum_probs=33.9
Q ss_pred CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCC----CChhHHHHHhhcCceeEEEEcC
Q 019388 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHAEVSIAFVQE 157 (341)
Q Consensus 100 ~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~~ 157 (341)
++|+.|.+..+....+.....++...|..++.++.. ...+++...++. ++++|+...
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 147 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMA 147 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEES
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEEC
Confidence 577887776665555444444445567766655432 456777777754 566666543
No 97
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=34.19 E-value=1.5e+02 Score=25.52 Aligned_cols=78 Identities=10% Similarity=0.027 Sum_probs=47.4
Q ss_pred EeHHHHHHHH--HHHH-HHHHh-CCCCCCCeEEEEcCC-ChHHHHHHHHHHhcCCeE-EeecCCCChhHHHHHhhcCcee
Q 019388 78 LTYQEVYDAA--IRFG-SAMRS-RGVNPGDRCGIYGSN-CPEWIIAMEACNSQAITY-VPLYDTLGANAVEFIINHAEVS 151 (341)
Q Consensus 78 ~Ty~el~~~~--~~la-~~L~~-~g~~~~~~V~i~~~n-~~~~~~~~lA~~~~G~~~-v~l~~~~~~~~l~~~l~~~~~~ 151 (341)
+++.+..... -..| ..|.+ .++++|++|++.... +.-.+++.+|- ..|+.+ +.....-..++....++..+++
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 6776654431 1122 23444 478999999999874 45555555554 568744 4444444445555667788888
Q ss_pred EEEEc
Q 019388 152 IAFVQ 156 (341)
Q Consensus 152 ~vi~~ 156 (341)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 88754
No 98
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=34.13 E-value=1.6e+02 Score=25.33 Aligned_cols=64 Identities=9% Similarity=-0.031 Sum_probs=43.2
Q ss_pred HHhCCC-CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 94 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 94 L~~~g~-~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
+.+.|. ++|+.|.... .+-.-..+.+++...|..++.+-|...+......++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 333443 5666655554 466666666777788886665555445566777889999999999864
No 99
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=33.73 E-value=2.1e+02 Score=23.95 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=44.7
Q ss_pred HHhCCC-CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 94 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 94 L~~~g~-~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
+.+.|. ++|+.|.... .+-.-..+.+++...|..++.+-|...+......++..++++++++..
T Consensus 52 a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE 116 (303)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344453 5666665554 466666677777899987766656555566777889999999999874
No 100
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=33.52 E-value=1.6e+02 Score=25.12 Aligned_cols=78 Identities=9% Similarity=-0.064 Sum_probs=49.0
Q ss_pred EeHHHHHHHHHH---HHHHHHhC--CCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeE
Q 019388 78 LTYQEVYDAAIR---FGSAMRSR--GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152 (341)
Q Consensus 78 ~Ty~el~~~~~~---la~~L~~~--g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 152 (341)
+++.+....... -...|.+. ++++|++|++...-..-.+++.+|-..-|..++.++. +++. ...+++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 566665533222 12334553 6899999999987556667777776665666766654 2333 44567788888
Q ss_pred EEEcCC
Q 019388 153 AFVQEN 158 (341)
Q Consensus 153 vi~~~~ 158 (341)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 776654
No 101
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=32.84 E-value=1.5e+02 Score=25.25 Aligned_cols=77 Identities=9% Similarity=0.084 Sum_probs=48.6
Q ss_pred EeHHHHHHHHHH---HHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEE
Q 019388 78 LTYQEVYDAAIR---FGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (341)
Q Consensus 78 ~Ty~el~~~~~~---la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 154 (341)
+++.+....... .-..|...++++|++|++...-+.-.+++.+|- ..|+.++.++. +++.+ ..+++.+++.++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCEEE
Confidence 677765533221 123455668999999999887566666666665 56887766654 33443 456778888777
Q ss_pred EcCC
Q 019388 155 VQEN 158 (341)
Q Consensus 155 ~~~~ 158 (341)
...+
T Consensus 216 ~~~~ 219 (340)
T 3s2e_A 216 NARD 219 (340)
T ss_dssp ETTT
T ss_pred eCCC
Confidence 5543
No 102
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=32.81 E-value=88 Score=25.90 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH
Q 019388 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE 114 (341)
Q Consensus 47 ~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~ 114 (341)
.++.+..+..|+...+... |....++-..++.++.+++.+.++.|.+.|. +.|++.| |+..
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d~iviaC-NTas 77 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNI---KMLVIAC-NTAT 77 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC---SEEEECC-HHHH
T ss_pred HHHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CEEEEeC-chhh
Confidence 3456666778988887776 7666677678899999999999999988765 3555555 4444
No 103
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=32.60 E-value=63 Score=26.59 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH
Q 019388 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE 114 (341)
Q Consensus 48 ~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~ 114 (341)
++....+..|+...+... |....++..-++.++.+.+.+.++.|.+.|. +.|++.| |+..
T Consensus 15 v~~~l~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d~iviaC-NTa~ 74 (255)
T 2jfz_A 15 VLKSLLKARLFDEIIYYG---DSARVPYGTKDPTTIKQFGLEALDFFKPHEI---ELLIVAC-NTAS 74 (255)
T ss_dssp HHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHGGGCC---SCEEECC-HHHH
T ss_pred HHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CEEEEeC-chhh
Confidence 455555678998888877 7777777778999999999999999988765 3566655 4443
No 104
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=32.10 E-value=2.2e+02 Score=23.76 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=44.1
Q ss_pred HHhCC-CCCCCe-EEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 94 MRSRG-VNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 94 L~~~g-~~~~~~-V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
+.+.| +++|+. ..+....+-.-..+.+++...|..++.+-|...+..-...++..++++++++..
T Consensus 51 a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34444 455652 233355666667777778899986666555545566777888999999999875
No 105
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=31.42 E-value=2.3e+02 Score=23.77 Aligned_cols=51 Identities=2% Similarity=-0.124 Sum_probs=36.5
Q ss_pred EcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 108 YGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 108 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
....+-.-..+.+++...|..++.+-|...+......++..++++++++..
T Consensus 70 ~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 70 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp EECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 445566666677777788886655555445566777888999999998864
No 106
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=31.12 E-value=66 Score=23.68 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCe-EEeecCCC
Q 019388 88 IRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT-YVPLYDTL 136 (341)
Q Consensus 88 ~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~-~v~l~~~~ 136 (341)
.++...|.+.|+.++..|.++|..+.....+...+...|.. +..+...+
T Consensus 66 ~~l~~~l~~~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 115 (148)
T 2fsx_A 66 AELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGF 115 (148)
T ss_dssp HHHHHHCC-------CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTT
T ss_pred HHHHHHHhhccCCCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCCh
Confidence 34444455557778888999998888887888888888873 55555443
No 107
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=30.82 E-value=1.6e+02 Score=25.32 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=41.4
Q ss_pred HHHh--CCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 93 AMRS--RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 93 ~L~~--~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
.|.+ .++++|++|++...-+.-.+++.+|-...|+.++.++. +++.+ ..++..+++.++...+
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDARR 240 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETTS
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEeccc
Confidence 4555 68999999999988556666666665443877666554 33443 4456778887775443
No 108
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=30.54 E-value=96 Score=25.79 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCChH
Q 019388 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPE 114 (341)
Q Consensus 47 ~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~~~~V~i~~~n~~~ 114 (341)
.++....+..|+...+.+. |....++-..+..++.+++...++.|.+ .|.+ .|.+.| |+..
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~d---~iViAC-NTas 78 (272)
T 1zuw_A 17 TVAKEIMRQLPKENIIYVG---DTKRCPYGPRPEEEVLQYTWELTNYLLENHHIK---MLVIAC-NTAT 78 (272)
T ss_dssp HHHHHHHHHSTTCCEEEEE---CGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCCS---EEEECC-HHHH
T ss_pred HHHHHHHHhCCCCcEEEec---cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCC---EEEEeC-chhh
Confidence 4566677788988888776 6666677778999999999999999998 7763 555555 4444
No 109
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=30.03 E-value=1.4e+02 Score=25.01 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=45.8
Q ss_pred EEeHHHHHHHHHHHHH---HHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEE
Q 019388 77 WLTYQEVYDAAIRFGS---AMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (341)
Q Consensus 77 ~~Ty~el~~~~~~la~---~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (341)
.+++.+.......++. .|...++++|++|++...-+.-.+++.+| ...|+.++.+. +++.+ ..+++.+++.+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla-k~~Ga~Vi~~~---~~~~~-~~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQML-NNAGYVVDLVS---ASLSQ-ALAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHH-HHHTCEEEEEC---SSCCH-HHHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEE---ChhhH-HHHHHcCCCEE
Confidence 3678776533333322 34455889999999998844555555555 55688777666 23333 33456788888
Q ss_pred E
Q 019388 154 F 154 (341)
Q Consensus 154 i 154 (341)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 7
No 110
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=29.89 E-value=2.2e+02 Score=24.24 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCC-------CChhHHHHHhhcCceeEEEEcC
Q 019388 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-------LGANAVEFIINHAEVSIAFVQE 157 (341)
Q Consensus 100 ~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~~ 157 (341)
++|+.|.+..+....+ ..++...|+.++.++.. ...+++...+++.++++|+...
T Consensus 107 ~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 107 SPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp CTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 5667666555443332 23444566665555432 5667777777655666665443
No 111
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=29.57 E-value=3e+02 Score=24.44 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=25.3
Q ss_pred EEcCCChHHHH-HHHHHHhcCCeEEeecCCCChh--HHHHHhhcCceeEEEEcCCChhhHHhh
Q 019388 107 IYGSNCPEWII-AMEACNSQAITYVPLYDTLGAN--AVEFIINHAEVSIAFVQENKIPSILSC 166 (341)
Q Consensus 107 i~~~n~~~~~~-~~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~~~~~~ 166 (341)
++..++.+.+. ++.++...|-.++.-++.+..- .+...++..+.++++++....+.+.+.
T Consensus 101 v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~a 163 (430)
T 3ri6_A 101 LALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHA 163 (430)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHh
Confidence 33444443332 2233344444444444443221 112244555666666655544444333
No 112
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=28.80 E-value=2.5e+02 Score=24.02 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=26.1
Q ss_pred CCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecC-----CCChhHHHHHhhcCceeEEEEc
Q 019388 98 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD-----TLGANAVEFIINHAEVSIAFVQ 156 (341)
Q Consensus 98 g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~~~~vi~~ 156 (341)
++++|+.|.+..+....+. -++...|..++.++. ....+++...++. ++++|+..
T Consensus 75 ~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 75 GIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp TCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred CCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 3456666655554433332 233445554444332 1345555555543 45555543
No 113
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=28.38 E-value=1.4e+02 Score=25.92 Aligned_cols=56 Identities=9% Similarity=-0.081 Sum_probs=41.1
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh
Q 019388 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI 160 (341)
Q Consensus 105 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 160 (341)
..+....+-.-..+.++|...|..++.+-|...+......++..++++++++....
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~ 150 (364)
T 4h27_A 95 HFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLD 150 (364)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTT
T ss_pred EEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 33444456666777778888998766665666667788889999999999987543
No 114
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=28.30 E-value=2.4e+02 Score=24.35 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=35.1
Q ss_pred CCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCC----CChhHHHHHhhcC--ceeEEEEcC
Q 019388 98 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHA--EVSIAFVQE 157 (341)
Q Consensus 98 g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~vi~~~ 157 (341)
++++|+.|.+..+....+.. ++...|+.++.++.. ...+++...++.. ++++|+...
T Consensus 68 ~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 68 GVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp TCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred CCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 46788888887776655543 334467766655432 4567777777653 456666544
No 115
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=28.29 E-value=1.6e+02 Score=26.35 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=46.9
Q ss_pred EeHHHHHHHHHHH--HH-HHHh---CCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCcee
Q 019388 78 LTYQEVYDAAIRF--GS-AMRS---RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVS 151 (341)
Q Consensus 78 ~Ty~el~~~~~~l--a~-~L~~---~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 151 (341)
+++.+.......+ |. .|.. .++++|++|++....+.--..+...+...|+.++.+.. +++.+ ..++..++.
T Consensus 199 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~--~~~~~-~~~~~lGa~ 275 (456)
T 3krt_A 199 LSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS--SPQKA-EICRAMGAE 275 (456)
T ss_dssp SCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--SHHHH-HHHHHHTCC
T ss_pred CCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC--CHHHH-HHHHhhCCc
Confidence 7777765332222 21 2332 47899999999988555444444445567887666653 44444 455778888
Q ss_pred EEEEcC
Q 019388 152 IAFVQE 157 (341)
Q Consensus 152 ~vi~~~ 157 (341)
.++...
T Consensus 276 ~vi~~~ 281 (456)
T 3krt_A 276 AIIDRN 281 (456)
T ss_dssp EEEETT
T ss_pred EEEecC
Confidence 777544
No 116
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=26.32 E-value=2.7e+02 Score=25.51 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=45.6
Q ss_pred HhCC-CCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcC
Q 019388 95 RSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (341)
Q Consensus 95 ~~~g-~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (341)
.+.| +++|+.|.. ...+-.-..+.++|...|..++.+-|...+......++..+++++++..
T Consensus 105 ~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 105 EEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 3445 467777654 5567777777778888898776666665666778888999999999975
No 117
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=26.25 E-value=1.5e+02 Score=25.20 Aligned_cols=57 Identities=9% Similarity=0.014 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecC--C--CChhHHHHHhhcCceeEEEEcC
Q 019388 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD--T--LGANAVEFIINHAEVSIAFVQE 157 (341)
Q Consensus 100 ~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~--~~~~~l~~~l~~~~~~~vi~~~ 157 (341)
++||.|.+..+....+.-....+...|+.++.++. . ...+++...++. ++++|+...
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 146 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQH 146 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCS
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEec
Confidence 46777777666555444433333346766555543 2 356677776653 566666544
No 118
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=26.01 E-value=2.7e+02 Score=23.63 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=46.5
Q ss_pred EEeHHHHHHHHHHHHH---HH-HhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeE
Q 019388 77 WLTYQEVYDAAIRFGS---AM-RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152 (341)
Q Consensus 77 ~~Ty~el~~~~~~la~---~L-~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 152 (341)
.+++.+.......++. .| ...++++|++|++....+.--..+...+...|+.++.+... .+.+ ..++..+++.
T Consensus 131 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~--~~~~-~~~~~~ga~~ 207 (342)
T 4eye_A 131 QLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNR--TAAT-EFVKSVGADI 207 (342)
T ss_dssp TSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS--GGGH-HHHHHHTCSE
T ss_pred CCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC--HHHH-HHHHhcCCcE
Confidence 3677776544333333 33 34478999999999885544444444445678877666542 3333 3444567777
Q ss_pred EEEcC
Q 019388 153 AFVQE 157 (341)
Q Consensus 153 vi~~~ 157 (341)
++...
T Consensus 208 v~~~~ 212 (342)
T 4eye_A 208 VLPLE 212 (342)
T ss_dssp EEESS
T ss_pred EecCc
Confidence 76554
No 119
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=25.95 E-value=2.4e+02 Score=23.94 Aligned_cols=73 Identities=11% Similarity=-0.006 Sum_probs=44.8
Q ss_pred EeHHHHHHHHHHH---HHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEE
Q 019388 78 LTYQEVYDAAIRF---GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (341)
Q Consensus 78 ~Ty~el~~~~~~l---a~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 154 (341)
+++.+........ -..|.+.++++|++|++...-+.-.+++.+| ...|+.++.+... ++.+. .++..+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~--~~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYA-VAMGAEVSVFARN--EHKKQ-DALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHH-HHTTCEEEEECSS--STTHH-HHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCC--HHHHH-HHHhcCCCeec
Confidence 6776665322211 2345566899999999998644555555555 4568877766543 23333 44567788777
No 120
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=25.85 E-value=2.9e+02 Score=23.30 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=39.8
Q ss_pred HhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcC
Q 019388 95 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (341)
Q Consensus 95 ~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (341)
...++++|++|.+....+.--..+...+...|+.++.+.. +++.+..+.+..++..++...
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~~ 203 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDYK 203 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTTCCSEEEETT
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEECC
Confidence 4458999999999988554444444444567887666543 355555554777887766543
No 121
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=25.74 E-value=2.6e+02 Score=25.48 Aligned_cols=67 Identities=7% Similarity=-0.022 Sum_probs=44.3
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCC-ChhHHHHHhhcCceeEEEEcCCChhhHHhhCc
Q 019388 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL-GANAVEFIINHAEVSIAFVQENKIPSILSCLP 168 (341)
Q Consensus 101 ~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~ 168 (341)
.|.+|+++......+.++-+ +..+|..++.+.... ..+++..+.+..+...++.++.+...+.+...
T Consensus 347 ~GKrv~i~g~~~~~~~la~~-L~ElGm~vv~~gt~~~~~~d~~~l~~~~~~~~~i~~~~d~~el~~~i~ 414 (492)
T 3u7q_A 347 EGKRVMLYIGGLRPRHVIGA-YEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVK 414 (492)
T ss_dssp TTCEEEECBSSSHHHHTHHH-HHTTTCEEEEEEESSCCHHHHHHHHTTSCTTCEEEESCBHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHH-HHHCCCEEEEEeCCCCCHHHHHHHHHhCCCCcEEEcCCCHHHHHHHHH
Confidence 57799999887766655554 479999888765544 45666666665555567777655555555443
No 122
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=25.48 E-value=2.3e+02 Score=22.10 Aligned_cols=57 Identities=7% Similarity=-0.142 Sum_probs=42.0
Q ss_pred CeEEEEcCC----ChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCC
Q 019388 103 DRCGIYGSN----CPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK 159 (341)
Q Consensus 103 ~~V~i~~~n----~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 159 (341)
.+|.+.+.. ..-..+....+-..|.-++.+....+.+++...++..++++|..+...
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~ 149 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALL 149 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCS
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 355554333 233344444555789999999999999999999999999999988753
No 123
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=25.26 E-value=2.2e+02 Score=24.38 Aligned_cols=77 Identities=8% Similarity=-0.001 Sum_probs=45.8
Q ss_pred EeHHHHHHHHHHHHH---HH-HhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEE
Q 019388 78 LTYQEVYDAAIRFGS---AM-RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (341)
Q Consensus 78 ~Ty~el~~~~~~la~---~L-~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (341)
+++.+.......++. .| ...++++|++|++....+.--..+...+...|+.++.+.. +++.+ ..++..++..+
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~ 216 (353)
T 4dup_A 140 YDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG--STGKC-EACERLGAKRG 216 (353)
T ss_dssp CCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHH-HHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC--CHHHH-HHHHhcCCCEE
Confidence 677776544333333 33 2357899999999966554444444444577887766654 33443 34455677766
Q ss_pred EEcC
Q 019388 154 FVQE 157 (341)
Q Consensus 154 i~~~ 157 (341)
+...
T Consensus 217 ~~~~ 220 (353)
T 4dup_A 217 INYR 220 (353)
T ss_dssp EETT
T ss_pred EeCC
Confidence 6443
No 124
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=25.03 E-value=1.4e+02 Score=25.00 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH
Q 019388 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE 114 (341)
Q Consensus 46 ~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~ 114 (341)
..++....+..|+...+... |...-++-..++.++.+++.+.++.|.+.|. +.|++.| |+..
T Consensus 37 ltv~~~i~~~~P~~~~iy~~---D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~---d~IVIAC-NTas 98 (290)
T 2vvt_A 37 LTVLKEALKQLPNERLIYLG---DTARCPYGPRPAEQVVQFTWEMADFLLKKRI---KMLVIAC-NTAT 98 (290)
T ss_dssp HHHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC---SEEEECC-HHHH
T ss_pred HHHHHHHHHHCCCccEEEec---ccccCCCCCCCHHHHHHHHHHHHHHHHHCCC---CEEEEeC-cchh
Confidence 45677777778888777666 6655555567899999999999999987665 3555555 4443
No 125
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=24.91 E-value=1.8e+02 Score=24.98 Aligned_cols=79 Identities=9% Similarity=0.012 Sum_probs=46.1
Q ss_pred EeHHHHHHHH--HHHH-HHHHhC-CCCCC-CeEEEEcCC-ChHHHHHHHHHHhcCCeEEeecCCCCh-hHHHHHhhcCce
Q 019388 78 LTYQEVYDAA--IRFG-SAMRSR-GVNPG-DRCGIYGSN-CPEWIIAMEACNSQAITYVPLYDTLGA-NAVEFIINHAEV 150 (341)
Q Consensus 78 ~Ty~el~~~~--~~la-~~L~~~-g~~~~-~~V~i~~~n-~~~~~~~~lA~~~~G~~~v~l~~~~~~-~~l~~~l~~~~~ 150 (341)
+++.+..... -..| ..|.+. ++++| ++|++.... +.-.+++.+|- ..|+.++.+...... ++....++..++
T Consensus 139 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (364)
T 1gu7_A 139 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELGA 217 (364)
T ss_dssp CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHTC
T ss_pred CCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcCC
Confidence 7777654332 1122 234453 78999 999999874 45555555554 568765555432222 333445567788
Q ss_pred eEEEEcC
Q 019388 151 SIAFVQE 157 (341)
Q Consensus 151 ~~vi~~~ 157 (341)
+.++...
T Consensus 218 ~~vi~~~ 224 (364)
T 1gu7_A 218 TQVITED 224 (364)
T ss_dssp SEEEEHH
T ss_pred eEEEecC
Confidence 8777543
No 126
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=24.44 E-value=3.1e+02 Score=23.23 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=5.3
Q ss_pred ceeeecHHHH
Q 019388 237 GVVLTNQAIV 246 (341)
Q Consensus 237 ~V~~th~~l~ 246 (341)
|.++....++
T Consensus 229 G~~~~~~~~~ 238 (390)
T 1elu_A 229 GGLYIHGDCL 238 (390)
T ss_dssp EEEEECTTTG
T ss_pred EEEEECHHhH
Confidence 5566555443
No 127
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=24.38 E-value=2.3e+02 Score=24.32 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=46.1
Q ss_pred EeHHHHHHHHHH---HHHHHHhCCCC-CCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEE
Q 019388 78 LTYQEVYDAAIR---FGSAMRSRGVN-PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (341)
Q Consensus 78 ~Ty~el~~~~~~---la~~L~~~g~~-~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (341)
+++.+....... .-..|.+.+++ +|++|++...-+.-.+++.+|- ..|+.++.+.. +++.+..+.+..+++.+
T Consensus 153 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v 229 (357)
T 2cf5_A 153 MAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAK-AMGHHVTVISS--SNKKREEALQDLGADDY 229 (357)
T ss_dssp CCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHH-HHTCEEEEEES--STTHHHHHHTTSCCSCE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--ChHHHHHHHHHcCCcee
Confidence 677664422111 11335566888 9999999986555555655554 46876655554 34445555557788777
Q ss_pred EEcC
Q 019388 154 FVQE 157 (341)
Q Consensus 154 i~~~ 157 (341)
+...
T Consensus 230 i~~~ 233 (357)
T 2cf5_A 230 VIGS 233 (357)
T ss_dssp EETT
T ss_pred eccc
Confidence 6544
No 128
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Probab=24.25 E-value=1.8e+02 Score=22.34 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEeHHHHHHHHHHHHHHHHhC
Q 019388 76 VWLTYQEVYDAAIRFGSAMRSR 97 (341)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~ 97 (341)
.-+||.++.+.+.++|..+.+.
T Consensus 7 ~l~s~~~i~~~i~~La~~I~~~ 28 (177)
T 3ohp_A 7 VMISEQEVAQRIRELGQQITEH 28 (177)
T ss_dssp EEECHHHHHHHHHHHHHHHHHH
T ss_pred EeeCHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999865
No 129
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=24.17 E-value=3.1e+02 Score=22.80 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH
Q 019388 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE 114 (341)
Q Consensus 47 ~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~ 114 (341)
.++....+..|+...+... |....++-..++.++.+++...++.|.+.|. +.|++.| |+..
T Consensus 36 tv~~~i~~~~P~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d~IVIaC-NTas 96 (286)
T 2jfq_A 36 TVAKEIMRQLPNETIYYLG---DIGRCPYGPRPGEQVKQYTVEIARKLMEFDI---KMLVIAC-NTAT 96 (286)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCC---SEEEECC-HHHH
T ss_pred HHHHHHHHHCCCccEEEec---cCCCCCcCCCCHHHHHHHHHHHHHHHHHCCC---CEEEEeC-Cchh
Confidence 4566666778888877666 6666666678899999999999999987665 3555555 4444
No 130
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=24.12 E-value=2e+02 Score=24.33 Aligned_cols=57 Identities=9% Similarity=0.019 Sum_probs=34.7
Q ss_pred CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCC----CChhHHHHHhhcCceeEEEEcC
Q 019388 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHAEVSIAFVQE 157 (341)
Q Consensus 100 ~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~~ 157 (341)
++||.|.+..+..+.+......+...|+.++.++.. ...+++...++. ++++|+...
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 146 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQH 146 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCS
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEEC
Confidence 577888777766666655544444567666555432 356777777653 456666554
No 131
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=24.03 E-value=2.3e+02 Score=24.12 Aligned_cols=61 Identities=3% Similarity=0.024 Sum_probs=40.1
Q ss_pred CCCCCCeEEEEcCCChH---HH-HHHHHHHhcCCeEEeec------------CCCChhHHHHHhhcCceeEEEEcCC
Q 019388 98 GVNPGDRCGIYGSNCPE---WI-IAMEACNSQAITYVPLY------------DTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 98 g~~~~~~V~i~~~n~~~---~~-~~~lA~~~~G~~~v~l~------------~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
-+++||+|++++|.+.- -+ .+.--+-..|..++.-. +....++|...+.+-++++|+|...
T Consensus 13 ~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 89 (311)
T 1zl0_A 13 WQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRG 89 (311)
T ss_dssp CCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCC
T ss_pred cCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 36899999999998632 11 11122223676666432 1224677888899999999999884
No 132
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=23.31 E-value=3.5e+02 Score=24.24 Aligned_cols=61 Identities=11% Similarity=0.015 Sum_probs=41.9
Q ss_pred hCC-CCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcC
Q 019388 96 SRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (341)
Q Consensus 96 ~~g-~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (341)
+.| +++++.|.-. ..+-.-..+.+++...|..++.+-|...+.+....++..++++++++.
T Consensus 154 ~~G~l~~g~tVV~a-SsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~ 215 (435)
T 1jbq_A 154 RDGTLKPGDTIIEP-TSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215 (435)
T ss_dssp HHTCSCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC
T ss_pred HcCCCCCCCEEEEe-CCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecC
Confidence 344 4566655444 446666667777788998666555554556677888999999999875
No 133
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=23.08 E-value=1.3e+02 Score=24.89 Aligned_cols=47 Identities=21% Similarity=0.072 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCChH-HHHHHHHHHhcCCe-EEeecC
Q 019388 88 IRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAIT-YVPLYD 134 (341)
Q Consensus 88 ~~la~~L~~~g~~~~~~V~i~~~n~~~-~~~~~lA~~~~G~~-~v~l~~ 134 (341)
..+...+..+|+.+++.|.+++..+.. ...+.+.+...|.. +..++.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~G 120 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGG 120 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETT
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecC
Confidence 456667777889999999999988765 66677777788873 444443
No 134
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=23.05 E-value=1.3e+02 Score=24.89 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH
Q 019388 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE 114 (341)
Q Consensus 46 ~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~ 114 (341)
..++.+..+..|+...+.+. |....++-..++.++.+.+...++.|.+.|. +.|++.| |+..
T Consensus 25 ltv~~~i~~~~P~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d~iviaC-NTas 86 (273)
T 2oho_A 25 LTVVCELIRQLPHEKIVYIG---DSARAPYGPRPKKQIKEYTWELVNFLLTQNV---KMIVFAC-NTAT 86 (273)
T ss_dssp HHHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHTTTC---SEEEECC-HHHH
T ss_pred HHHHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CEEEEeC-chHh
Confidence 45777777788888777666 6555565567889999999999999987665 3555555 4444
No 135
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=23.01 E-value=2e+02 Score=24.59 Aligned_cols=75 Identities=8% Similarity=-0.091 Sum_probs=45.3
Q ss_pred EeHHHHHHHHHH---HHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCC-eEEeecCCCChhHHHHHhhcCceeEE
Q 019388 78 LTYQEVYDAAIR---FGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIA 153 (341)
Q Consensus 78 ~Ty~el~~~~~~---la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (341)
+++.+....... -...+...++++|++|++...-..-.+++.+| ...|+ .++.++. +++ -..+++..+++.+
T Consensus 140 ~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~--~~~-~~~~~~~lGa~~v 215 (352)
T 3fpc_A 140 IPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGS--RKH-CCDIALEYGATDI 215 (352)
T ss_dssp SCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECC--CHH-HHHHHHHHTCCEE
T ss_pred CCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECC--CHH-HHHHHHHhCCceE
Confidence 666665433111 12235667899999999998644455555554 56787 5665654 233 3355666788777
Q ss_pred EEc
Q 019388 154 FVQ 156 (341)
Q Consensus 154 i~~ 156 (341)
+..
T Consensus 216 i~~ 218 (352)
T 3fpc_A 216 INY 218 (352)
T ss_dssp ECG
T ss_pred EcC
Confidence 654
No 136
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=22.89 E-value=1.1e+02 Score=26.11 Aligned_cols=67 Identities=7% Similarity=0.023 Sum_probs=42.9
Q ss_pred CCeEEEEcCCChHHHHHHHHHHhcCCeEEeecC--CCChh---HHHHHhhcCceeEEEEcCCChhhHHhhCccc
Q 019388 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD--TLGAN---AVEFIINHAEVSIAFVQENKIPSILSCLPRC 170 (341)
Q Consensus 102 ~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~~~~~---~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~ 170 (341)
..+..+...+...|+.-.+++-..+ ...+.+ .-++. ++...++..++++||++.....+..+...+.
T Consensus 189 ~~~~~v~~H~af~Yfa~~yGl~~~~--~~~i~~~~ePs~~~l~~l~~~ik~~~v~~If~e~~~~~k~~~~ia~e 260 (307)
T 3ujp_A 189 NQRFLVSCEGAFSYLARDYGMEEIY--MWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQA 260 (307)
T ss_dssp GGCEEEEEESTTHHHHHHTTCEEEE--EESSCCSSCCCHHHHHHHHHHHHTTTCSEEEEETTSCSHHHHHTTTT
T ss_pred cCCEEEEECchHHHHHHHCCCcEEE--eeccCCCCCCCHHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHH
Confidence 4566666777888887777665432 123333 33444 4556667889999999998777665555443
No 137
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=22.84 E-value=1.6e+02 Score=21.64 Aligned_cols=51 Identities=8% Similarity=-0.012 Sum_probs=32.0
Q ss_pred CCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEE
Q 019388 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (341)
Q Consensus 102 ~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (341)
-|.+.++.|. ....-++..|...|.-.+.+.+....+++...+++.+.+++
T Consensus 71 ~Dlvii~vp~-~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 71 VDMVDVFRNS-EAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVV 121 (145)
T ss_dssp CSEEECCSCS-THHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEE
T ss_pred CCEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEE
Confidence 3667777774 44444444566677555555666667778888887776644
No 138
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=22.81 E-value=3.4e+02 Score=22.77 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=35.9
Q ss_pred CCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeec--C----CCChhHHHHHhhc----CceeEEEEcC
Q 019388 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLY--D----TLGANAVEFIINH----AEVSIAFVQE 157 (341)
Q Consensus 99 ~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~----~~~~~~l~~~l~~----~~~~~vi~~~ 157 (341)
.++|+.|.+..+....+... +...|..++.++ . ....+++...+++ .++++|+...
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 36788888877665544433 566787776665 2 2367788888864 3566666554
No 139
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=22.81 E-value=3.2e+02 Score=22.52 Aligned_cols=79 Identities=6% Similarity=-0.129 Sum_probs=45.5
Q ss_pred EeHHHHHHHH--------HHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEE-eecCCCChhHHHHHhhcC
Q 019388 78 LTYQEVYDAA--------IRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV-PLYDTLGANAVEFIINHA 148 (341)
Q Consensus 78 ~Ty~el~~~~--------~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~ 148 (341)
+||.|+.+.. .++........-..+.+|.++-.+....-.+--.+-..|+.++ ... +..+....++..
T Consensus 128 ~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~---~g~eAl~~~~~~ 204 (286)
T 3n0r_A 128 FTPTEAAQILDCDFGEVERLIGDAQAEIDAELATEVLIIEDEPVIAADIEALVRELGHDVTDIAA---TRGEALEAVTRR 204 (286)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHC
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeC---CHHHHHHHHHhC
Confidence 8888887762 2222333222223345676665544443444444445677665 333 356666777788
Q ss_pred ceeEEEEcCCC
Q 019388 149 EVSIAFVQENK 159 (341)
Q Consensus 149 ~~~~vi~~~~~ 159 (341)
.+++|++|-..
T Consensus 205 ~~dlvl~D~~M 215 (286)
T 3n0r_A 205 TPGLVLADIQL 215 (286)
T ss_dssp CCSEEEEESCC
T ss_pred CCCEEEEcCCC
Confidence 89999998654
No 140
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=22.80 E-value=2.1e+02 Score=25.52 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=45.2
Q ss_pred EeHHHHHHHHHHHHH---HHH---hCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCcee
Q 019388 78 LTYQEVYDAAIRFGS---AMR---SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVS 151 (341)
Q Consensus 78 ~Ty~el~~~~~~la~---~L~---~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 151 (341)
+++.+.......++. .|. ..++++|++|++....+.--..+...+...|+.++.+.. +.+.+. .+++.++.
T Consensus 191 ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~--~~~~~~-~~~~lGa~ 267 (447)
T 4a0s_A 191 LTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS--SAQKEA-AVRALGCD 267 (447)
T ss_dssp SCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHH-HHHHTTCC
T ss_pred CCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC--CHHHHH-HHHhcCCC
Confidence 777776543322222 232 257899999999987554444444444567887666653 444444 44667877
Q ss_pred EEEE
Q 019388 152 IAFV 155 (341)
Q Consensus 152 ~vi~ 155 (341)
.++.
T Consensus 268 ~~i~ 271 (447)
T 4a0s_A 268 LVIN 271 (447)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 7664
No 141
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=22.61 E-value=2.3e+02 Score=21.77 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=35.9
Q ss_pred CCCCCCeEEEEcCCC--hHHHHHHHHHHhcCCeEEeecCCC--ChhHHHHHhhcCc
Q 019388 98 GVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPLYDTL--GANAVEFIINHAE 149 (341)
Q Consensus 98 g~~~~~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~--~~~~l~~~l~~~~ 149 (341)
|+.+|+.+++.++++ -..++..++. ..|..++.++... +.+++..+++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 70 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQMAETRG 70 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHHHHTTT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHHHHhcC
Confidence 789999999999996 4455555555 6676666666554 7777777665544
No 142
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=22.40 E-value=2.1e+02 Score=24.72 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=38.0
Q ss_pred HHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCC-eEEeecCCCChhHHHHHhhcCceeEEEEc
Q 019388 94 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIAFVQ 156 (341)
Q Consensus 94 L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 156 (341)
+...++++|++|++...-+.-.+++.+| ...|+ .++.++. +++. ..+++..++..++..
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~~ 234 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLA-RLAGATTVILSTR--QATK-RRLAEEVGATATVDP 234 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECS--CHHH-HHHHHHHTCSEEECT
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECC--CHHH-HHHHHHcCCCEEECC
Confidence 4555889999999998744455555554 46787 6666654 2333 445666777776643
No 143
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=22.30 E-value=1.4e+02 Score=24.28 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q 019388 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYG 109 (341)
Q Consensus 48 ~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~ 109 (341)
++.+..+..|+...+.+. |....++-..+..++.+++.+.++.|.+.|. |.|++.|
T Consensus 15 v~~~l~~~~P~~~~iy~~---D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~---d~iviaC 70 (254)
T 1b73_A 15 VLKAIRNRYRKVDIVYLG---DTARVPYGIRSKDTIIRYSLECAGFLKDKGV---DIIVVAC 70 (254)
T ss_dssp HHHHHHHHSTTCEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC---SEEEECC
T ss_pred HHHHHHHhCCCCcEEEee---cCCCCCCCcCCHHHHHHHHHHHHHHHHHCCC---CEEEEeC
Confidence 455566678888777666 6666666678899999999999999987665 3555555
No 144
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=22.30 E-value=2.6e+02 Score=24.23 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=25.7
Q ss_pred CCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCC-----CChhHHHHHhhcCceeEEEEc
Q 019388 98 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-----LGANAVEFIINHAEVSIAFVQ 156 (341)
Q Consensus 98 g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 156 (341)
++++|+.|.+..+....+. .++...|+.++.++.. ...+++...++. ++++|+..
T Consensus 78 ~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 137 (418)
T 2c81_A 78 GIGEGDEVIVPSLTWIATA---TAVLNVNALPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPV 137 (418)
T ss_dssp TCCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCB
T ss_pred CCCCcCEEEECCCccHhHH---HHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEe
Confidence 3456666666555443332 2334556555444321 234455444432 44555543
No 145
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=22.28 E-value=1.2e+02 Score=25.10 Aligned_cols=47 Identities=4% Similarity=-0.090 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHH-hcCCe-EEeecC
Q 019388 88 IRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN-SQAIT-YVPLYD 134 (341)
Q Consensus 88 ~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~-~~G~~-~v~l~~ 134 (341)
..+...+.+.|+.+++.|.++|..+.....+.+.+. ..|.. +..++.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~G 267 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDG 267 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESS
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCc
Confidence 455566777788899999999999988888888887 78873 434443
No 146
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=22.16 E-value=1.9e+02 Score=20.65 Aligned_cols=43 Identities=7% Similarity=-0.076 Sum_probs=30.6
Q ss_pred HHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEee
Q 019388 90 FGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132 (341)
Q Consensus 90 la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 132 (341)
.+.+|.+.|+.++..+.+-..+..+.+.++-=+++.|...+.+
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl 88 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVV 88 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEE
Confidence 4567777888777777777777778888888888887644333
No 147
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=22.13 E-value=4.2e+02 Score=23.80 Aligned_cols=70 Identities=9% Similarity=0.030 Sum_probs=49.5
Q ss_pred HHHHHHHhCC-CCCCCeEEEEcCCChHHHHHHHHHHh----cC--CeEEeecCCCC-h------hHHHHHhhcCceeEEE
Q 019388 89 RFGSAMRSRG-VNPGDRCGIYGSNCPEWIIAMEACNS----QA--ITYVPLYDTLG-A------NAVEFIINHAEVSIAF 154 (341)
Q Consensus 89 ~la~~L~~~g-~~~~~~V~i~~~n~~~~~~~~lA~~~----~G--~~~v~l~~~~~-~------~~l~~~l~~~~~~~vi 154 (341)
++.+.+.+.+ +.++++|++...=+.++.+++..+.. .| ..++-++.... . +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4555666655 57889999999899999988877766 34 45666676665 2 3456667777888777
Q ss_pred EcCC
Q 019388 155 VQEN 158 (341)
Q Consensus 155 ~~~~ 158 (341)
.+-+
T Consensus 84 ~~~~ 87 (464)
T 3a2k_A 84 AQID 87 (464)
T ss_dssp EECC
T ss_pred EEec
Confidence 6654
No 148
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=22.08 E-value=1.3e+02 Score=24.62 Aligned_cols=47 Identities=13% Similarity=-0.028 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCCh-HHHHHHHHHHhcCCe-EEeecC
Q 019388 88 IRFGSAMRSRGVNPGDRCGIYGSNCP-EWIIAMEACNSQAIT-YVPLYD 134 (341)
Q Consensus 88 ~~la~~L~~~g~~~~~~V~i~~~n~~-~~~~~~lA~~~~G~~-~v~l~~ 134 (341)
..++..+.+.|+.+++.|.+++..+. ....+.+.+...|.. +..++.
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~G 115 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNG 115 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETT
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecC
Confidence 46666777778888999999998775 666667777788874 334443
No 149
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=21.99 E-value=2e+02 Score=24.90 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=43.7
Q ss_pred EeHHHHHHHHHH---HHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEE
Q 019388 78 LTYQEVYDAAIR---FGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (341)
Q Consensus 78 ~Ty~el~~~~~~---la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 154 (341)
+++.+....... .-..|.+.++++|++|++...-+.-.+++.+|- ..|+.++.+.. +++.+. .++..++..++
T Consensus 168 ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~Vi~~~~--~~~~~~-~a~~lGa~~vi 243 (369)
T 1uuf_A 168 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFTT--SEAKRE-AAKALGADEVV 243 (369)
T ss_dssp GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--SGGGHH-HHHHHTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHH-HHHHcCCcEEe
Confidence 666654322111 123455668999999999987555556666554 46876555553 233333 33446777666
Q ss_pred EcC
Q 019388 155 VQE 157 (341)
Q Consensus 155 ~~~ 157 (341)
...
T Consensus 244 ~~~ 246 (369)
T 1uuf_A 244 NSR 246 (369)
T ss_dssp ETT
T ss_pred ccc
Confidence 443
No 150
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=21.93 E-value=1.7e+02 Score=21.01 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=37.0
Q ss_pred EEEeHHHHHHHH----HHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCe
Q 019388 76 VWLTYQEVYDAA----IRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128 (341)
Q Consensus 76 ~~~Ty~el~~~~----~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~ 128 (341)
..+.+.++.... ..+...+...++.++..|.++|..+.....+...+...|..
T Consensus 61 inip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~ 117 (139)
T 3d1p_A 61 INVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYS 117 (139)
T ss_dssp EECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEEEECSSSHHHHHHHHHHHTTTCC
T ss_pred EEcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEEEECCCCchHHHHHHHHHHcCCC
Confidence 455555554322 24444555557778899999999999888888888888874
No 151
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=21.89 E-value=1.8e+02 Score=23.84 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=44.6
Q ss_pred EEEeHHHHHH-----HHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCe-EEeecCCC
Q 019388 76 VWLTYQEVYD-----AAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT-YVPLYDTL 136 (341)
Q Consensus 76 ~~~Ty~el~~-----~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~-~v~l~~~~ 136 (341)
..+.+.++.. ....+...+...++.++..|.++|..+.....+..++...|.. +..+...+
T Consensus 199 ~nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~ 265 (280)
T 1urh_A 199 LNVPWTELVREGELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAW 265 (280)
T ss_dssp EECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSC
T ss_pred eEeeHHHhhcCCccCCHHHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChH
Confidence 4677777654 1235556666678888899999999999998888888999974 44555544
No 152
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=21.84 E-value=1.4e+02 Score=26.57 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=44.7
Q ss_pred EEEeHHHHHH-------HHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCe-EEeecCCC
Q 019388 76 VWLTYQEVYD-------AAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT-YVPLYDTL 136 (341)
Q Consensus 76 ~~~Ty~el~~-------~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~-~v~l~~~~ 136 (341)
..+.+.++.. ....+.+.+.+.|+.+++.|.++|..+.....+.+++...|.. +..++..+
T Consensus 170 ~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~ 238 (423)
T 2wlr_A 170 DYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGW 238 (423)
T ss_dssp EEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTH
T ss_pred EEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCH
Confidence 4556665533 2456666777788989999999999888888899999999973 44555443
No 153
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=21.72 E-value=1.4e+02 Score=24.36 Aligned_cols=58 Identities=7% Similarity=0.046 Sum_probs=40.9
Q ss_pred EEEeHHHHHHHH------HHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCe-EEeec
Q 019388 76 VWLTYQEVYDAA------IRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT-YVPLY 133 (341)
Q Consensus 76 ~~~Ty~el~~~~------~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~-~v~l~ 133 (341)
..+.+.++.... ..+...+.+.|+.+++.|.++|..+.....+.+.+...|.. +..++
T Consensus 191 ~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~ 255 (271)
T 1e0c_A 191 VNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYA 255 (271)
T ss_dssp EECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECS
T ss_pred eeccHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeC
Confidence 456666654221 33445566778889999999999998888888888899974 43443
No 154
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=21.71 E-value=1.6e+02 Score=21.60 Aligned_cols=49 Identities=8% Similarity=-0.054 Sum_probs=28.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeE
Q 019388 103 DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152 (341)
Q Consensus 103 ~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 152 (341)
|.+.++.|. ....-++-.|...|.-.+.+.+....+++....++.+.++
T Consensus 79 Dlvvi~vp~-~~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~v 127 (144)
T 2d59_A 79 EVVDLFVKP-KLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLII 127 (144)
T ss_dssp SEEEECSCH-HHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEE
T ss_pred CEEEEEeCH-HHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCEE
Confidence 455555554 3333334456666665555666666677777777777663
No 155
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=21.48 E-value=2.1e+02 Score=24.34 Aligned_cols=57 Identities=9% Similarity=0.019 Sum_probs=27.6
Q ss_pred hCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCC-----CChhHHHHHhhcCceeEEEEc
Q 019388 96 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-----LGANAVEFIINHAEVSIAFVQ 156 (341)
Q Consensus 96 ~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 156 (341)
..++++||.|.+..+....+. .++...|+.++.++.. ...+++...++. ++++|+..
T Consensus 70 ~l~~~~gd~Vi~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 131 (373)
T 3frk_A 70 GYDIGFGDEVIVPSNTFIATA---LAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE-KTKAIIAV 131 (373)
T ss_dssp HTTCCTTCEEEEETTSCTHHH---HHHHHHSCEEEEECEETTTTEECGGGTGGGCCT-TEEEEEEE
T ss_pred HcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEeccccccCcCHHHHHHhcCC-CCeEEEEE
Confidence 334566777666655444432 2344456555444322 144555555543 45555533
No 156
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=21.48 E-value=3.5e+02 Score=23.21 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=7.0
Q ss_pred cceeeecHHHHHHH
Q 019388 236 KGVVLTNQAIVAEV 249 (341)
Q Consensus 236 K~V~~th~~l~~~~ 249 (341)
-|+++....++..+
T Consensus 238 ~G~~~~~~~~~~~~ 251 (420)
T 1t3i_A 238 IGFLYGKEEILEAM 251 (420)
T ss_dssp CEEEEECHHHHHHS
T ss_pred eEEEEEchHHHhhc
Confidence 35555555554433
No 157
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=21.08 E-value=3.7e+02 Score=22.59 Aligned_cols=62 Identities=8% Similarity=-0.046 Sum_probs=39.2
Q ss_pred HHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCC-eEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 93 AMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 93 ~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
.+...++++|+.|++...-+.-.+++.+| ...|+ .++.++. +++ -..++++.++..++...+
T Consensus 152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~a-k~~G~~~vi~~~~--~~~-k~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDI--SSE-KLALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHTTCCTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEES--CHH-HHHHHHHTTCSEEEETTT
T ss_pred HHHHhccCCCCEEEEECCCCcchHHHHHH-HHcCCcEEEEEec--hHH-HHHHHHHcCCeEEEeCCC
Confidence 34566889999999997755555555555 44554 4454543 233 345667788888776554
No 158
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=20.99 E-value=1.7e+02 Score=21.29 Aligned_cols=51 Identities=6% Similarity=-0.086 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeE
Q 019388 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152 (341)
Q Consensus 101 ~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 152 (341)
.-|.+.++.| .....-++..|...|.-.+-+.+....+++....++.+.++
T Consensus 69 ~vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~ 119 (138)
T 1y81_A 69 DVDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEY 119 (138)
T ss_dssp TCCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEE
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCEE
Confidence 3467777777 34444555567777776666666666778888888777663
No 159
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=20.98 E-value=4.2e+02 Score=23.16 Aligned_cols=55 Identities=9% Similarity=-0.234 Sum_probs=41.7
Q ss_pred EEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh
Q 019388 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI 160 (341)
Q Consensus 106 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 160 (341)
.+....+-.-..+.+++...|..++.+-|...+......++..++++++++....
T Consensus 115 vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~ 169 (398)
T 4d9i_A 115 FATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYD 169 (398)
T ss_dssp EEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHH
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 3346667777777788888898776666666667778888999999999988543
No 160
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=20.87 E-value=99 Score=25.74 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCC
Q 019388 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV 99 (341)
Q Consensus 47 ~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~ 99 (341)
.++.+..+..|+...+... |+...++-..+..++.+++.+.++.|.+.|.
T Consensus 21 tv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~~~~~L~~~g~ 70 (276)
T 2dwu_A 21 TVASEIIRQLPKESICYIG---DNERCPYGPRSVEEVQSFVFEMVEFLKQFPL 70 (276)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHhCCCCcEEEcc---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4556666778888876666 6555566678899999999999999987554
No 161
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=20.79 E-value=2.4e+02 Score=25.24 Aligned_cols=57 Identities=5% Similarity=-0.168 Sum_probs=42.5
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh
Q 019388 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI 160 (341)
Q Consensus 104 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 160 (341)
+..+....+-.-..+.+++.+.|..++.+-|...+..-...++..++++++++....
T Consensus 161 ~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~ 217 (442)
T 3ss7_X 161 YSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYG 217 (442)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 355566677777788888888898666555555566677888999999999988543
No 162
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=20.74 E-value=2.8e+02 Score=21.03 Aligned_cols=90 Identities=4% Similarity=-0.047 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhH---HHHHhhcCceeEEEEcCCChhh
Q 019388 86 AAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANA---VEFIINHAEVSIAFVQENKIPS 162 (341)
Q Consensus 86 ~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~---l~~~l~~~~~~~vi~~~~~~~~ 162 (341)
....+...|.+.+ ++..+.++++.....-...-.+...|..+..++..++.++ ....++..+.+++|+.+.....
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 109 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 109 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcC
Confidence 3445555566543 5667777776654444444444556888888888776544 4455566778889888643322
Q ss_pred HHhhCcccCCcccEEEEeccC
Q 019388 163 ILSCLPRCCLYLKTIVSFANV 183 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~ 183 (341)
+ ..+....++.++..
T Consensus 110 l------di~~~~~VI~~d~p 124 (185)
T 2jgn_A 110 L------DISNVKHVINFDLP 124 (185)
T ss_dssp -------CCCSBSEEEESSCC
T ss_pred C------CcccCCEEEEeCCC
Confidence 2 12456667766643
No 163
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=20.64 E-value=3.9e+02 Score=22.68 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecC-----CCChhHHHHHhhcCceeEEE
Q 019388 98 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD-----TLGANAVEFIINHAEVSIAF 154 (341)
Q Consensus 98 g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~~~~vi 154 (341)
++++|+.|.+..+....+. .++...|+.++.++. ....+++...++. +.++|+
T Consensus 74 ~~~~gd~Vi~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~ 131 (388)
T 1b9h_A 74 GVGPGTEVIVPAFTFISSS---QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM 131 (388)
T ss_dssp TCCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC
T ss_pred CCCCcCEEEECCCccHHHH---HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEE
Confidence 4567777777665544443 344556765554432 2356666666642 455555
No 164
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=20.60 E-value=14 Score=29.90 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.3
Q ss_pred CCCCCCCccceeeecHHHH
Q 019388 228 TSGTTGEPKGVVLTNQAIV 246 (341)
Q Consensus 228 TSGsTG~pK~V~~th~~l~ 246 (341)
+|+-|| ||||+--++.+-
T Consensus 3 ~~~~tg-pkgvi~d~~~~~ 20 (217)
T 2trc_P 3 QATHTG-PKGVINDWRKFK 20 (217)
T ss_dssp SCCSSH-HHHHHHHHHHHH
T ss_pred CCCCCC-cchHHHHHHHHH
Confidence 567787 999999998887
No 165
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=20.29 E-value=2e+02 Score=24.69 Aligned_cols=55 Identities=13% Similarity=-0.146 Sum_probs=38.6
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCeEEeecCCC-ChhHHHHHhhcCceeEEEEcCCC
Q 019388 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTL-GANAVEFIINHAEVSIAFVQENK 159 (341)
Q Consensus 105 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~ 159 (341)
..+....+-.-..+.+++...|..++.+-|.. .+..-...++..++++++++...
T Consensus 79 ~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~~ 134 (351)
T 3aey_A 79 AVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNF 134 (351)
T ss_dssp EEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 33444556666666688889998766655543 45566678889999999998753
No 166
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=20.06 E-value=4.1e+02 Score=22.65 Aligned_cols=55 Identities=4% Similarity=-0.011 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecC-----CCChhHHHHHhhcCceeEEEEc
Q 019388 98 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD-----TLGANAVEFIINHAEVSIAFVQ 156 (341)
Q Consensus 98 g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~~~~vi~~ 156 (341)
++++|+.|.+..+....... ++...|+.++.++. ....+++...++. +.++|+..
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 57788888877665544433 44567776655433 2356777777754 56666654
Done!