Query 019389
Match_columns 341
No_of_seqs 135 out of 943
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 09:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 100.0 7.9E-35 1.7E-39 277.4 -6.1 292 1-334 2-300 (302)
2 PF02338 OTU: OTU-like cystein 99.9 7.3E-24 1.6E-28 175.0 8.0 112 200-326 1-121 (121)
3 KOG3288 OTU-like cysteine prot 99.8 9E-19 2E-23 165.3 6.9 126 193-334 109-235 (307)
4 PF10275 Peptidase_C65: Peptid 99.5 2.4E-13 5.1E-18 126.8 13.1 99 231-330 138-243 (244)
5 KOG2605 OTU (ovarian tumor)-li 99.4 3.3E-13 7.1E-18 134.2 4.1 94 190-294 214-310 (371)
6 KOG3991 Uncharacterized conser 99.3 2.2E-11 4.7E-16 114.1 9.8 99 230-331 154-255 (256)
7 COG5539 Predicted cysteine pro 98.9 4.4E-10 9.5E-15 108.3 0.4 125 193-330 170-305 (306)
8 COG5539 Predicted cysteine pro 98.7 5.2E-09 1.1E-13 101.0 1.9 114 198-331 116-231 (306)
9 PF05415 Peptidase_C36: Beet n 90.1 1.1 2.5E-05 37.4 6.5 95 199-328 3-103 (104)
10 PF05381 Peptidase_C21: Tymovi 57.3 65 0.0014 27.6 7.6 91 202-328 2-94 (104)
11 PRK09784 hypothetical protein; 34.7 20 0.00044 35.3 1.3 23 190-212 196-218 (417)
12 PF05412 Peptidase_C33: Equine 34.5 36 0.00078 29.3 2.6 16 200-215 5-20 (108)
13 KOG2605 OTU (ovarian tumor)-li 32.5 20 0.00043 36.7 0.9 43 251-293 3-45 (371)
14 KOG2606 OTU (ovarian tumor)-li 26.2 39 0.00085 33.7 1.7 25 231-255 188-212 (302)
15 PF07418 PCEMA1: Acidic phosph 23.6 52 0.0011 32.5 1.9 39 13-56 2-45 (282)
16 cd03346 eu_TrpOH Eukaryotic tr 23.5 43 0.00094 33.2 1.4 91 185-289 113-212 (287)
17 cd00361 arom_aa_hydroxylase Bi 22.2 20 0.00044 34.2 -1.1 90 185-288 53-152 (221)
18 TIGR01270 Trp_5_monoox tryptop 21.7 45 0.00098 35.2 1.2 88 187-288 244-340 (464)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.9e-35 Score=277.41 Aligned_cols=292 Identities=27% Similarity=0.316 Sum_probs=207.1
Q ss_pred CeeeccccccccceEEeccccccccccceeeeeecCCCceeeeecccCcccccccceeEEeecCCccccccccccccccc
Q 019389 1 MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPG 80 (341)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (341)
|++..++..|.+|...|. +|-+.+-......+..+..|.+.. ++.|+.|.+....++. -+-|++++++++..
T Consensus 2 ~~~~~~~~~~~~~e~iLa----RHr~E~keLq~ki~~mKk~a~k~~-k~~rK~~~~~~~~le~---el~qkH~kEL~~~~ 73 (302)
T KOG2606|consen 2 MTCMDSEQDEESNEEILA----RHRRERKELQAKITSMKKAAPKGN-KKKRKELTEDIAKLEK---ELSQKHKKELEKLK 73 (302)
T ss_pred cCCccchhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHHh---HHHHHHHHHHHhhc
Confidence 678888999999999898 999999999999999999998887 8999999985555544 24579999999999
Q ss_pred cccCCCCCCCcceeeeeecccccccccccccccccceeeeccccCCccccccCCccccccCCCCCcccceeeeeeccCch
Q 019389 81 LTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSS 160 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~k~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
+... +...++....-|+..+..+|.++- .+.-+.. .|.+.-|-.-+-.-.....-.+++.++.
T Consensus 74 ~~~~--------------~e~~~~e~~~~s~l~~~a~~~~~~--~ee~P~~-sKa~k~r~k~r~e~r~~e~~~~~e~~~~ 136 (302)
T KOG2606|consen 74 LINE--------------SEVTPKENLIESVLSPIANMSLEN--KEETPRQ-SKARKRREKKRKEERKREAEKIAEEESL 136 (302)
T ss_pred ccCc--------------cccCccccchhhhhcccccccccc--cccCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 356777778889999999977553 1100000 0111111111111122111223332221
Q ss_pred hhhhhhcccccCCCCCcccccccccccccccCCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHH
Q 019389 161 KAHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVA 240 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gL~I~~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vv 240 (341)
. -.+..+ ..+..+ ....--..||.+++||+||+|||+||+|||..+++...+.+.||...+++||.++.
T Consensus 137 ~---~~~~~k-------~~E~~k-~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~ 205 (302)
T KOG2606|consen 137 S---NQADAK-------SMEKEK-LAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVE 205 (302)
T ss_pred h---cCCchh-------hhHHHH-HHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 0 001110 011111 12222336889999999999999999999999887777777777777777777776
Q ss_pred HHhhcChhhhcccccc--CHHHHHHHHhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEE
Q 019389 241 DEFIKRREETEWFIEG--DFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRV 318 (341)
Q Consensus 241 dy~~~n~e~fe~Fie~--dfdeY~~~M~k~gtWGG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L 318 (341)
|++--..+..++++.+ +|++||++|++++.|||++||.|+|++|++||.||+.+ ++ +.+||++|.+++||+|
T Consensus 206 df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~----~p--~~~~geey~kd~pL~l 279 (302)
T KOG2606|consen 206 DFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD----GP--ILEYGEEYGKDKPLIL 279 (302)
T ss_pred HhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC----CC--ceeechhhCCCCCeee
Confidence 6544334444555543 79999999999999999999999999999999999975 33 5789999987899999
Q ss_pred EEc----CCC-cceeeecCCC
Q 019389 319 LYH----GFG-HYDALQNLGH 334 (341)
Q Consensus 319 ~Yh----g~g-HYDSL~~~~~ 334 (341)
+|| ++| ||||+.+...
T Consensus 280 vY~rH~y~LGeHYNS~~~~~n 300 (302)
T KOG2606|consen 280 VYHRHAYGLGEHYNSVTPLKN 300 (302)
T ss_pred ehHHhHHHHHhhhcccccccc
Confidence 996 445 9999987654
No 2
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.90 E-value=7.3e-24 Score=175.03 Aligned_cols=112 Identities=39% Similarity=0.689 Sum_probs=88.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhh-cChhhhccccccCHHHHHHHHhCCCCcCCHHHHH
Q 019389 200 PGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFI-KRREETEWFIEGDFDLYVSQIRKPHVWGGEPELL 278 (341)
Q Consensus 200 pGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~-~n~e~fe~Fie~dfdeY~~~M~k~gtWGG~iEL~ 278 (341)
||||||||||||+||+...+. .+..|.+||+++++||. .+++.|++|++++ +|+++++|||++||+
T Consensus 1 pgDGnClF~Avs~~l~~~~~~-------~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~ 67 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGG-------SEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQ 67 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SS-------STTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHH
T ss_pred CCCccHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHH
Confidence 799999999999999954311 14578999999999999 9999999998766 899999999999999
Q ss_pred HHHHhcCCCEEEEeecCCCCCceEEEEcCC---CCCCCCeEEEEEcC-----CCcc
Q 019389 279 MASHVLRMPITVYMHDKDAGGLISIAEYGQ---EYGKEKPIRVLYHG-----FGHY 326 (341)
Q Consensus 279 AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~---e~~~~~pI~L~Yhg-----~gHY 326 (341)
|+|++|+++|+||+... +......++.. .....++|.++|++ .+||
T Consensus 68 a~a~~~~~~I~v~~~~~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 68 ALANVLNRPIIVYSSSD--GDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp HHHHHHTSEEEEECETT--TBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred HHHHHhCCeEEEEEcCC--CCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 99999999999998632 22222223222 22346899999997 6798
No 3
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9e-19 Score=165.27 Aligned_cols=126 Identities=25% Similarity=0.384 Sum_probs=110.1
Q ss_pred CcEEEeeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhh-ccccccCHHHHHHHHhCCCCc
Q 019389 193 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDLYVSQIRKPHVW 271 (341)
Q Consensus 193 gL~I~~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~f-e~Fie~dfdeY~~~M~k~gtW 271 (341)
-+.++.||.|++|||+||++.+....+. -..+||+.++..+..|++.| +++++..-.|||+||+++..|
T Consensus 109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~----------~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsW 178 (307)
T KOG3288|consen 109 VLSRRVVPDDNSCLFTAIAYVIFKQVSN----------RPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSW 178 (307)
T ss_pred eeEEEeccCCcchhhhhhhhhhcCccCC----------CcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHcccccc
Confidence 4788999999999999999988743221 12689999999999999987 688899999999999999999
Q ss_pred CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCC
Q 019389 272 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH 334 (341)
Q Consensus 272 GG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~ 334 (341)
||.+||..||+.|++.|.|++.+ + ..|..||++.+....+.|+|.|. |||+|.+...
T Consensus 179 GGaIElsILS~~ygveI~vvDiq--t---~rid~fged~~~~~rv~llydGI-HYD~l~m~~~ 235 (307)
T KOG3288|consen 179 GGAIELSILSDYYGVEICVVDIQ--T---VRIDRFGEDKNFDNRVLLLYDGI-HYDPLAMNEF 235 (307)
T ss_pred CceEEeeeehhhhceeEEEEecc--e---eeehhcCCCCCCCceEEEEeccc-ccChhhhccC
Confidence 99999999999999999999764 2 35889998876788999999998 9999988765
No 4
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.50 E-value=2.4e-13 Score=126.81 Aligned_cols=99 Identities=23% Similarity=0.347 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhcChhhhccccc----cCHHHHHH-HHhCCCCcCCHHHHHHHHHhcCCCEEEEeecCC-CCCceEEE
Q 019389 231 LADDLRAKVADEFIKRREETEWFIE----GDFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKD-AGGLISIA 304 (341)
Q Consensus 231 ~h~eLR~~vvdy~~~n~e~fe~Fie----~dfdeY~~-~M~k~gtWGG~iEL~AlS~ll~~~I~Vy~~d~~-s~G~i~I~ 304 (341)
....+|-.+..||..|.++|++|++ .++++||+ .+...+.-++++.+.|||++|+++|.|+..|++ ++..+...
T Consensus 138 iV~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~ 217 (244)
T PF10275_consen 138 IVIFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRH 217 (244)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEE
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccc
Confidence 4457888888899999999999997 56999995 688889999999999999999999999999975 44444455
Q ss_pred EcCCCC-CCCCeEEEEEcCCCcceeee
Q 019389 305 EYGQEY-GKEKPIRVLYHGFGHYDALQ 330 (341)
Q Consensus 305 ~yG~e~-~~~~pI~L~Yhg~gHYDSL~ 330 (341)
.+.++. ...+.|.|+|.. ||||.|+
T Consensus 218 ~~~~~~~~~~~~i~LLyrp-gHYdIly 243 (244)
T PF10275_consen 218 EFPPDNESQEPQITLLYRP-GHYDILY 243 (244)
T ss_dssp EES-SSTTSS-SEEEEEET-BEEEEEE
T ss_pred cCCCccCCCCCEEEEEEcC-Ccccccc
Confidence 564321 245789999997 5999986
No 5
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.3e-13 Score=134.21 Aligned_cols=94 Identities=24% Similarity=0.338 Sum_probs=84.1
Q ss_pred ccCCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhccccccCHHHHHHHHhCCC
Q 019389 190 VYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPH 269 (341)
Q Consensus 190 ~~~gL~I~~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe~Fie~dfdeY~~~M~k~g 269 (341)
...|+.++.|.+||||+|||+|+|+|.+ ++.|+..|++++|++..+++.|+-|+.++|.+|+..+++++
T Consensus 214 ~~~g~e~~Kv~edGsC~fra~aDQvy~d-----------~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~ 282 (371)
T KOG2605|consen 214 KHFGFEYKKVVEDGSCLFRALADQVYGD-----------DEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADG 282 (371)
T ss_pred HHhhhhhhhcccCCchhhhccHHHhhcC-----------HHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCC
Confidence 4468999999999999999999999953 57899999999999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHH---hcCCCEEEEeec
Q 019389 270 VWGGEPELLMASH---VLRMPITVYMHD 294 (341)
Q Consensus 270 tWGG~iEL~AlS~---ll~~~I~Vy~~d 294 (341)
.||+++|+||+|. ....++.+.+..
T Consensus 283 ~~gnhie~Qa~a~~~~~~~~~~~~~~~~ 310 (371)
T KOG2605|consen 283 EPGNHIEQQAAADIYEEIEKPLNITSFK 310 (371)
T ss_pred CCcchHHHhhhhhhhhhccccceeeccc
Confidence 9999999999995 556666666653
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.2e-11 Score=114.07 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhhcChhhhcccccc--CHHHHHHH-HhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEc
Q 019389 230 ELADDLRAKVADEFIKRREETEWFIEG--DFDLYVSQ-IRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY 306 (341)
Q Consensus 230 ~~h~eLR~~vvdy~~~n~e~fe~Fie~--dfdeY~~~-M~k~gtWGG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~y 306 (341)
..+.++|--+..++..|++.|++|+++ +.++||.+ +.-..+=.|+++|.||++.+++.|.|...|+.+++...-..|
T Consensus 154 yiV~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~f 233 (256)
T KOG3991|consen 154 YIVMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDF 233 (256)
T ss_pred HHHHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcC
Confidence 345678888888888999999999976 69999985 444567799999999999999999998888776543211222
Q ss_pred CCCCCCCCeEEEEEcCCCcceeeec
Q 019389 307 GQEYGKEKPIRVLYHGFGHYDALQN 331 (341)
Q Consensus 307 G~e~~~~~pI~L~Yhg~gHYDSL~~ 331 (341)
-+ +..+.|.|+|.. ||||.|+.
T Consensus 234 pe--~s~P~I~LLYrp-GHYdilY~ 255 (256)
T KOG3991|consen 234 PE--ASAPEIYLLYRP-GHYDILYK 255 (256)
T ss_pred cc--ccCceEEEEecC-CccccccC
Confidence 21 346789999986 59999874
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.4e-10 Score=108.32 Aligned_cols=125 Identities=16% Similarity=0.043 Sum_probs=85.1
Q ss_pred CcEEEeeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhcccc--c-----cCHHHHHHHH
Q 019389 193 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFI--E-----GDFDLYVSQI 265 (341)
Q Consensus 193 gL~I~~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe~Fi--e-----~dfdeY~~~M 265 (341)
.+.-.+++|||+|+|.+|++||..+.- .-++. ....+|-+-..|...+...|..+. + -.|++|+..|
T Consensus 170 ~i~k~d~~~dG~ieia~iS~~l~v~i~----~Vdv~--~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~ 243 (306)
T COG5539 170 WIVKPDSQGDGCIEIAIISDQLPVRIH----VVDVD--KDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEV 243 (306)
T ss_pred hhhccccCCCceEEEeEeccccceeee----eeecc--hhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhh
Confidence 455578999999999999999975421 11111 123445444455544556666553 1 2699999999
Q ss_pred hCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEE--c--CCCcceeee
Q 019389 266 RKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY--H--GFGHYDALQ 330 (341)
Q Consensus 266 ~k~gtWGG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L~Y--h--g~gHYDSL~ 330 (341)
+-+..||+.+|++|||++|++|+++++.. ++ ++.|+.= +.+-..-+.| | +.||||++.
T Consensus 244 ~~~a~~g~~~ei~qLas~lk~~~~~~nT~----~~--~ik~n~c-~~~~~~e~~~~~Ha~a~GH~n~~~ 305 (306)
T COG5539 244 LFDASDGITIEIQQLASLLKNPHYYTNTA----SP--SIKCNIC-GTGFVGEKDYYAHALATGHYNFGE 305 (306)
T ss_pred cccccccchHHHHHHHHHhcCceEEeecC----Cc--eEEeecc-ccccchhhHHHHHHHhhcCccccC
Confidence 99999999999999999999999999853 33 2344321 1222344455 4 567999874
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.2e-09 Score=100.98 Aligned_cols=114 Identities=28% Similarity=0.266 Sum_probs=94.9
Q ss_pred eeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhcccc-ccCHHHHHHHHhCCCCcC-CHH
Q 019389 198 GIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFI-EGDFDLYVSQIRKPHVWG-GEP 275 (341)
Q Consensus 198 ~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe~Fi-e~dfdeY~~~M~k~gtWG-G~i 275 (341)
+.-.|.+|+|+|.+..++. ....+||+.+.-...+|++.|.+.+ +-+.-+|+.|+.++..|| |.+
T Consensus 116 p~~~d~srl~q~~~~~l~~-------------asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~i 182 (306)
T COG5539 116 PGQDDNSRLFQAERYSLRD-------------ASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCI 182 (306)
T ss_pred CCCCchHHHHHHHHhhhhh-------------hhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceE
Confidence 4446899999999988762 2578999999999999999998766 458999999999999999 999
Q ss_pred HHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeec
Q 019389 276 ELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQN 331 (341)
Q Consensus 276 EL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~ 331 (341)
|+.++++.|++.|+|...+.+ ....|++.. ....+.+.|.|. |||....
T Consensus 183 eia~iS~~l~v~i~~Vdv~~~-----~~dr~~~~~-~~q~~~i~f~g~-hfD~~t~ 231 (306)
T COG5539 183 EIAIISDQLPVRIHVVDVDKD-----SEDRYNSHP-YVQRISILFTGI-HFDEETL 231 (306)
T ss_pred EEeEeccccceeeeeeecchh-----HHhhccCCh-hhhhhhhhhccc-ccchhhh
Confidence 999999999999999998743 245677653 336788999987 9998763
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=90.08 E-value=1.1 Score=37.36 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=55.5
Q ss_pred eCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhccccccCHHHHHHHHhC--CCCcCCHHH
Q 019389 199 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRK--PHVWGGEPE 276 (341)
Q Consensus 199 IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe~Fie~dfdeY~~~M~k--~gtWGG~iE 276 (341)
+..|+|||--||+.+|.-. -+.|... |..+. -..+.|+.|+++ |.+|-|
T Consensus 3 ~sR~NNCLVVAis~~L~~T--------------~e~l~~~----M~An~--------~~i~~y~~W~r~~~~STW~D--- 53 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVT--------------LEKLDNL----MQANV--------STIKKYHTWLRKKRPSTWDD--- 53 (104)
T ss_pred ccCCCCeEeehHHHHhcch--------------HHHHHHH----HHhhH--------HHHHHHHHHHhcCCCCcHHH---
Confidence 5679999999999987521 1111111 11121 146778887765 678954
Q ss_pred HHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEE----cCCCccee
Q 019389 277 LLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY----HGFGHYDA 328 (341)
Q Consensus 277 L~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L~Y----hg~gHYDS 328 (341)
..++|+.+++.|+|--.... + ..+..+++.. ....++| .+.|||-+
T Consensus 54 C~mFA~~LkVsm~vkV~~~~--~-~~l~~~~d~~---~s~v~~~~~~Ke~dGHF~a 103 (104)
T PF05415_consen 54 CRMFADALKVSMQVKVLSDK--P-YDLLYFVDGA---VSVVTLHLEGKESDGHFIA 103 (104)
T ss_pred HHHHHHhheeEEEEEEcCCC--C-ceeeEeecCc---cceehhhhhccccCCceec
Confidence 56899999999888543322 2 2234445432 2334444 26789854
No 10
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=57.27 E-value=65 Score=27.55 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=57.6
Q ss_pred CCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhccccccCHHHHHHHHhCCCCcCCHHHHHHHH
Q 019389 202 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMAS 281 (341)
Q Consensus 202 DGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe~Fie~dfdeY~~~M~k~gtWGG~iEL~AlS 281 (341)
.-+||--||+.|.... .+++-..|....-|-++.|++. ++-|- .--.+.|||
T Consensus 2 ~~~CLL~A~s~at~~~----------~~~LW~~L~~~lPDSlL~n~ei----------------~~~GL--STDhltaLa 53 (104)
T PF05381_consen 2 ALDCLLVAISQATSIS----------PETLWATLCEILPDSLLDNPEI----------------RTLGL--STDHLTALA 53 (104)
T ss_pred CcceeHHhhhhhhCCC----------HHHHHHHHHHhCchhhcCchhh----------------hhcCC--cHHHHHHHH
Confidence 4589999999987632 1345566666666655555432 22111 112468999
Q ss_pred HhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcC--CCccee
Q 019389 282 HVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHG--FGHYDA 328 (341)
Q Consensus 282 ~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L~Yhg--~gHYDS 328 (341)
..|+....|.... + ..+||-.. ....+.|.|.. .|||..
T Consensus 54 ~~~~~~~~~hs~~----~---~~~~Gi~~-as~~~~I~ht~G~p~HFs~ 94 (104)
T PF05381_consen 54 YRYHFQCTFHSDH----G---VLHYGIKD-ASTVFTITHTPGPPGHFSL 94 (104)
T ss_pred HHHheEEEEEcCC----c---eEEeecCC-CceEEEEEeCCCCCCcccc
Confidence 9999999999742 2 35788764 34556666652 359988
No 11
>PRK09784 hypothetical protein; Provisional
Probab=34.70 E-value=20 Score=35.29 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=19.8
Q ss_pred ccCCcEEEeeCCCCchhhHHHHH
Q 019389 190 VYTDYSVIGIPGDGRCLFRAVAH 212 (341)
Q Consensus 190 ~~~gL~I~~IpGDGNCLFRAVA~ 212 (341)
...||+-.+|.|||-||.||+.-
T Consensus 196 ~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 196 KTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred hhhCceecccCCCchhHHHHHHH
Confidence 34689999999999999999863
No 12
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=34.55 E-value=36 Score=29.27 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=14.3
Q ss_pred CCCCchhhHHHHHhhh
Q 019389 200 PGDGRCLFRAVAHGAC 215 (341)
Q Consensus 200 pGDGNCLFRAVA~QL~ 215 (341)
|+||+|-+|.|+.-++
T Consensus 5 P~DG~CG~H~i~aI~n 20 (108)
T PF05412_consen 5 PGDGSCGWHCIAAIMN 20 (108)
T ss_pred CCCCchHHHHHHHHHH
Confidence 7899999999998666
No 13
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=32.51 E-value=20 Score=36.73 Aligned_cols=43 Identities=33% Similarity=0.391 Sum_probs=39.3
Q ss_pred ccccccCHHHHHHHHhCCCCcCCHHHHHHHHHhcCCCEEEEee
Q 019389 251 EWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMH 293 (341)
Q Consensus 251 e~Fie~dfdeY~~~M~k~gtWGG~iEL~AlS~ll~~~I~Vy~~ 293 (341)
..++.++|+.|+..+.++.+-|+-+||.+++.+++.+.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~ 45 (371)
T KOG2605|consen 3 REEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEP 45 (371)
T ss_pred ccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCC
Confidence 4556789999999999999999999999999999999999875
No 14
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=26.25 E-value=39 Score=33.71 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhcChhhhccccc
Q 019389 231 LADDLRAKVADEFIKRREETEWFIE 255 (341)
Q Consensus 231 ~h~eLR~~vvdy~~~n~e~fe~Fie 255 (341)
....||...++||..|.++|.+|+.
T Consensus 188 ~v~kLR~~~a~Ymr~H~~df~pf~~ 212 (302)
T KOG2606|consen 188 SVQKLREETADYMREHVEDFLPFLL 212 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHhc
Confidence 4578999999999999999999973
No 15
>PF07418 PCEMA1: Acidic phosphoprotein precursor PCEMA1; InterPro: IPR010882 This family consists of several acidic phosphoprotein precursor PCEMA1 sequences which appear to be found exclusively in Plasmodium chabaudi. PCEMA1 is an antigen that is associated with the membrane of the infected erythrocyte throughout the entire intraerythrocytic cycle []. The exact function of this family is unclear.
Probab=23.56 E-value=52 Score=32.53 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=30.9
Q ss_pred ceEEeccccccccccceeeeeec-----CCCceeeeecccCcccccccc
Q 019389 13 NVVNLGGRFQGQMGGNICGVTYR-----GPSSSCCFYLCSGQSKKNYAG 56 (341)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 56 (341)
|||+|+ +..|-||.+|-. --||--||+.|+-+.++.++-
T Consensus 2 k~islg-----lissiifsivlakn~s~s~sttgcF~f~rkK~kk~~~~ 45 (282)
T PF07418_consen 2 KVISLG-----LISSIIFSIVLAKNSSGSGSTTGCFGFCRKKPKKIHKT 45 (282)
T ss_pred ceeeec-----chhhhheeeEEeccCCCCCCccceehhhcccccccccc
Confidence 678886 889999988743 345678999999999988764
No 16
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=23.47 E-value=43 Score=33.23 Aligned_cols=91 Identities=10% Similarity=0.137 Sum_probs=60.8
Q ss_pred cccccccCCcEEEeeCC--CCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhh------cccc-c
Q 019389 185 SHGKKVYTDYSVIGIPG--DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET------EWFI-E 255 (341)
Q Consensus 185 ~~g~~~~~gL~I~~IpG--DGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~f------e~Fi-e 255 (341)
.+-++..+|++++.|+| ...=+|..+|+..+- ...++|..-.-...+-+|-| -|++ +
T Consensus 113 n~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp--------------~t~~IR~~~~~~YtpEPDifHEl~GHvPlLad 178 (287)
T cd03346 113 SRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFH--------------CTQYVRHSSDPFYTPEPDTCHELLGHVPLLAD 178 (287)
T ss_pred HHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc--------------ceeeecCccccCCCCCCchHHHHhccchhhcC
Confidence 56677778999999999 888889999987762 13455554322333444433 1223 4
Q ss_pred cCHHHHHHHHhCCCCcCCHHHHHHHHHhcCCCEE
Q 019389 256 GDFDLYVSQIRKPHVWGGEPELLMASHVLRMPIT 289 (341)
Q Consensus 256 ~dfdeY~~~M~k~gtWGG~iEL~AlS~ll~~~I~ 289 (341)
..|.+|.+.+.+-+.=+..-++.-||++|=-.|.
T Consensus 179 p~FA~f~q~~G~~~l~a~~~~i~~LarlYWfTVE 212 (287)
T cd03346 179 PSFAQFSQEIGLASLGASDEDIQKLATCYFFTVE 212 (287)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhHhhhhhcc
Confidence 5799999997765444577778889988754443
No 17
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=22.23 E-value=20 Score=34.17 Aligned_cols=90 Identities=11% Similarity=0.191 Sum_probs=61.1
Q ss_pred cccccccCCcEEEeeCC--CCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhc------ccc-c
Q 019389 185 SHGKKVYTDYSVIGIPG--DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE------WFI-E 255 (341)
Q Consensus 185 ~~g~~~~~gL~I~~IpG--DGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe------~Fi-e 255 (341)
.+-++..+|++++.||| ..+=+|..+|+..+- ...++|..-.-...+-||-|- |++ .
T Consensus 53 n~~L~~~TGw~~~pV~gli~~~~Ff~~LA~r~Fp--------------~t~~iR~~~~~~YtpEPDifHe~~GH~P~L~~ 118 (221)
T cd00361 53 SEFLKALTGWTLVPVAGLISPRDFFALLAFRVFP--------------VTQYIRHPEEPDYTPEPDIFHELFGHVPLLAD 118 (221)
T ss_pred HHHHHhhcCCEEEecCCcCCHHHHHHHHhcCCCc--------------eeeeecCcCCCCCCCCChhHHHHhccchhhcC
Confidence 56777889999999999 788888888876552 123455543333344555441 223 4
Q ss_pred cCHHHHHHHHhCCCCcCCH-HHHHHHHHhcCCCE
Q 019389 256 GDFDLYVSQIRKPHVWGGE-PELLMASHVLRMPI 288 (341)
Q Consensus 256 ~dfdeY~~~M~k~gtWGG~-iEL~AlS~ll~~~I 288 (341)
.+|.+|.+.+.+-+.=..+ -++..||++|=-.|
T Consensus 119 p~fAdf~q~~G~~~l~a~~~~~~~~LarlyWfTV 152 (221)
T cd00361 119 PSFADFSQEYGLASLGASDLEEIEKLARLYWFTV 152 (221)
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHhhhhhc
Confidence 5799999998876655666 67888998875333
No 18
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=21.73 E-value=45 Score=35.20 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=57.0
Q ss_pred cccccCCcEEEeeCC--CCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhh------ccc-cccC
Q 019389 187 GKKVYTDYSVIGIPG--DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET------EWF-IEGD 257 (341)
Q Consensus 187 g~~~~~gL~I~~IpG--DGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~f------e~F-ie~d 257 (341)
-++..+|+++++|+| ...=+|..+|+..+-. ..++|..-.-...+-||-| -|+ .+..
T Consensus 244 ~L~~~TGw~~~pV~Gll~~r~F~~~LA~R~F~~--------------tqyIR~~~~~~YtpEPDi~HEl~GHvPlLadp~ 309 (464)
T TIGR01270 244 FLKAKTGFRLRPVAGYLSARDFLSGLAFRVFHC--------------TQYVRHSADPFYTPEPDTCHELLGHMPLLADPS 309 (464)
T ss_pred HHHhccCCEEEeccccCCHHHHHHHHhcCccce--------------eeeeccccccCcCCCCchHHHHhcccchhcCHH
Confidence 334567999999998 7788888888877621 2455554333334444433 122 3457
Q ss_pred HHHHHHHHhCCCCcCCHHHHHHHHHhcCCCE
Q 019389 258 FDLYVSQIRKPHVWGGEPELLMASHVLRMPI 288 (341)
Q Consensus 258 fdeY~~~M~k~gtWGG~iEL~AlS~ll~~~I 288 (341)
|.+|.+.+..-+.=+..-++.-||++|=-.|
T Consensus 310 FA~f~q~~G~~sl~a~~e~i~~LarlyWfTV 340 (464)
T TIGR01270 310 FAQFSQEIGLASLGASEEDIKKLATLYFFTI 340 (464)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHhHhhhhhh
Confidence 9999999776555447777888998875333
Done!