Query 019389
Match_columns 341
No_of_seqs 135 out of 943
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 15:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 1.5E-35 5E-40 267.2 7.6 139 181-334 46-184 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 1E-32 3.5E-37 252.6 10.4 121 192-331 18-139 (212)
3 3phx_A RNA-directed RNA polyme 100.0 1.9E-31 6.7E-36 239.9 14.2 140 192-340 29-168 (185)
4 3phu_A RNA-directed RNA polyme 100.0 1.2E-30 4.2E-35 240.6 16.4 140 192-340 29-168 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 9.1E-22 3.1E-26 182.5 13.7 99 231-333 131-232 (234)
6 4dhi_B Ubiquitin thioesterase 99.8 8.5E-19 2.9E-23 167.2 14.4 103 230-333 168-275 (284)
7 4ddg_A Ubiquitin-conjugating e 99.8 1.8E-18 6E-23 170.9 14.2 97 231-330 299-398 (399)
8 2zfy_A Ubiquitin thioesterase 99.8 2.3E-18 8E-23 159.4 12.2 114 202-330 117-233 (234)
9 3dkb_A Tumor necrosis factor, 98.6 1.7E-07 5.9E-12 92.0 11.5 139 194-337 112-288 (390)
10 3zrh_A Ubiquitin thioesterase 98.2 3.5E-06 1.2E-10 84.1 10.1 137 194-335 189-352 (454)
11 2zfy_A Ubiquitin thioesterase 95.7 0.0048 1.6E-07 56.8 2.8 22 195-216 44-65 (234)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=1.5e-35 Score=267.18 Aligned_cols=139 Identities=24% Similarity=0.415 Sum_probs=102.0
Q ss_pred cccccccccccCCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhccccccCHHH
Q 019389 181 NVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDL 260 (341)
Q Consensus 181 ~~~~~~g~~~~~gL~I~~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe~Fie~dfde 260 (341)
+..|...+....||.+++||+|||||||||++||+. . ++.|.+||+.+++||.+|+++|++|++++|++
T Consensus 46 e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g---~--------~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~ 114 (185)
T 3pfy_A 46 EHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYG---D--------QDMHEVVRKHCMDYLMKNADYFSNYVTEDFTT 114 (185)
T ss_dssp HHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHS---C--------GGGHHHHHHHHHHHHHHTHHHHTTCC------
T ss_pred HHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhC---C--------chHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 446777776678999999999999999999999994 2 35689999999999999999999999999999
Q ss_pred HHHHHhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCC
Q 019389 261 YVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH 334 (341)
Q Consensus 261 Y~~~M~k~gtWGG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~ 334 (341)
||++|+++++|||++||+|||++|+++|.||+.+. .++.+. .|.+....++|+|+||+.+|||||++|.+
T Consensus 115 Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~---~~i~i~-~g~~~~~~~~I~L~Y~~~~HYnSv~~p~~ 184 (185)
T 3pfy_A 115 YINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYST---EPINTF-HGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184 (185)
T ss_dssp -----------CCHHHHHHHHHHHTSCEEEESSCS---SCSEEE-CTTSCCTTSCEEEEEETTTEEEEEECC--
T ss_pred HHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCC---CCeEEe-cCccCCCCCEEEEEECCCCCcccccCCCC
Confidence 99999999999999999999999999999999753 233332 25444457899999998889999998764
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.98 E-value=1e-32 Score=252.65 Aligned_cols=121 Identities=28% Similarity=0.431 Sum_probs=107.0
Q ss_pred CCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhh-ccccccCHHHHHHHHhCCCC
Q 019389 192 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDLYVSQIRKPHV 270 (341)
Q Consensus 192 ~gL~I~~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~f-e~Fie~dfdeY~~~M~k~gt 270 (341)
.||.+++||+||||||||||+|| .. +..|.+||+.+++||.+|+++| +.|++++|++||++|+++++
T Consensus 18 ~~l~~~~i~~DGnCLFrAva~qL-~~-----------~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~ 85 (212)
T 3by4_A 18 NVLSVHPVLDDNSCLFHAIAYGI-FK-----------QDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMES 85 (212)
T ss_dssp SEEEEECCCCSTTHHHHHHHHHH-HS-----------SCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTS
T ss_pred CCeEEEEeCCCCchHHHHHHHHh-CC-----------chHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCE
Confidence 46899999999999999999999 42 1347899999999999999999 47788999999999999999
Q ss_pred cCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeec
Q 019389 271 WGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQN 331 (341)
Q Consensus 271 WGG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~ 331 (341)
|||++||+|||++|+++|.||+.+ .++ +..||++. ..++|+|+|+| +|||||+.
T Consensus 86 WGg~iEL~Als~~~~~~I~V~~~~---~~~--~~~~~~~~-~~~~I~L~Y~g-~HYdsl~~ 139 (212)
T 3by4_A 86 WGGAIEIGIISDALAVAIYVVDID---AVK--IEKFNEDK-FDNYILILFNG-IHYDSLTM 139 (212)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEETT---TTE--EEEESTTT-CSEEEEEEECS-SCEEEEEE
T ss_pred EccHHHHHHHHHHHCCCEEEEECC---CCC--eEEeCCCC-CCCeEEEEEcC-CcceEEec
Confidence 999999999999999999999974 233 56788875 56899999996 59999998
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=1.9e-31 Score=239.91 Aligned_cols=140 Identities=16% Similarity=0.301 Sum_probs=113.1
Q ss_pred CCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhccccccCHHHHHHHHhCCCCc
Q 019389 192 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVW 271 (341)
Q Consensus 192 ~gL~I~~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe~Fie~dfdeY~~~M~k~gtW 271 (341)
.+|.+..||||||||||||++||+.. .+.+. .+..|.+||+.+++||.+|+++ .+++++|++||++|+++++|
T Consensus 29 ~~~~v~rv~gDGnCLFrAva~qL~~~--~~~~~---~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~W 101 (185)
T 3phx_A 29 DYFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEW 101 (185)
T ss_dssp HHEEEECCCSSTTHHHHHHHHHHSTT--CCTTT---HHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCC
T ss_pred cCeEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCcc
Confidence 35888999999999999999999842 12211 1345999999999999999998 45789999999999999999
Q ss_pred CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCCCCCCCC
Q 019389 272 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISK 340 (341)
Q Consensus 272 GG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~~~p~~~ 340 (341)
||++||+|+|++|+++|+||+.+.+. .++.+..||++. ..++|+|+|++.+|||+|+......++.+
T Consensus 102 Gg~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~-~~~~I~L~Y~g~~HYdsl~~~~~~~~~~~ 168 (185)
T 3phx_A 102 GSTLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGD-VFTAVNLLHSGQTHFDALRILPQFETDTR 168 (185)
T ss_dssp CBHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCC-TTTSEEEEEETTTEEEEEEECGGGC----
T ss_pred CcHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCC-CCCEEEEEECCCcCchhceECCCCCCCCc
Confidence 99999999999999999999987542 234567888765 36899999999779999998877666543
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.97 E-value=1.2e-30 Score=240.63 Aligned_cols=140 Identities=16% Similarity=0.298 Sum_probs=116.8
Q ss_pred CCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhccccccCHHHHHHHHhCCCCc
Q 019389 192 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVW 271 (341)
Q Consensus 192 ~gL~I~~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe~Fie~dfdeY~~~M~k~gtW 271 (341)
.+|.++.||||||||||||++||+.. .+.+. .+..|.+||+.+++||.+|+++ .+++++|++||++|+++++|
T Consensus 29 ~~~~V~rvpgDGnCLFrAVs~qL~~~--~~~~~---~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~W 101 (219)
T 3phu_A 29 DYFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEW 101 (219)
T ss_dssp HHEEEECCCCSSCHHHHHHHHHHCTT--CCTTT---HHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCC
T ss_pred cceEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCcc
Confidence 45889999999999999999999842 12111 1345999999999999999998 45788999999999999999
Q ss_pred CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCCCCCCCC
Q 019389 272 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISK 340 (341)
Q Consensus 272 GG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~~~p~~~ 340 (341)
||++||+|+|++|+++|+||+.+.+ +..+.+..||++.. .++|+|+|++.+|||+|+......+...
T Consensus 102 GG~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge~~~-~~~I~L~Y~g~~HYdSL~~~~d~~~~~~ 168 (219)
T 3phu_A 102 GSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDV-FTAVNLLHSGQTHFDALRILPQFETDTR 168 (219)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESSCCT-TTSEEEEEETTTEEEEEEECTTTCCSCC
T ss_pred CCHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecCCCC-CCeEEEEECCCcCchhheECCCCCCCCC
Confidence 9999999999999999999998743 22455778987753 6899999999779999999887766543
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.87 E-value=9.1e-22 Score=182.52 Aligned_cols=99 Identities=15% Similarity=0.216 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhcChhhhcccccc--CHHHHHH-HHhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 019389 231 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 307 (341)
Q Consensus 231 ~h~eLR~~vvdy~~~n~e~fe~Fie~--dfdeY~~-~M~k~gtWGG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG 307 (341)
....||..++.||..|+++|++|+++ +|++||+ .++.+++|||++||+|||++|+++|.|++.|+.. +.+....|.
T Consensus 131 iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~ 209 (234)
T 1tff_A 131 IVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFP 209 (234)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCC
T ss_pred HHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCC
Confidence 45679999999999999999999976 7999999 8999999999999999999999999999988653 222233444
Q ss_pred CCCCCCCeEEEEEcCCCcceeeecCC
Q 019389 308 QEYGKEKPIRVLYHGFGHYDALQNLG 333 (341)
Q Consensus 308 ~e~~~~~pI~L~Yhg~gHYDSL~~~~ 333 (341)
+ +..+.|+|+|++ ||||+|+.++
T Consensus 210 ~--~~~~~I~LlY~p-gHYdily~~~ 232 (234)
T 1tff_A 210 E--AATPSVYLLYKT-SHYNILYAAD 232 (234)
T ss_dssp C--CSSCSEEEEEET-TEEEEEEECC
T ss_pred C--CCCCeEEEEECC-CCceecccCC
Confidence 3 235679999997 5999998654
No 6
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.79 E-value=8.5e-19 Score=167.19 Aligned_cols=103 Identities=16% Similarity=0.107 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhhcChhhhcccccc--CHHHHHH-HHhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEE-
Q 019389 230 ELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAE- 305 (341)
Q Consensus 230 ~~h~eLR~~vvdy~~~n~e~fe~Fie~--dfdeY~~-~M~k~gtWGG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~- 305 (341)
.....||..++.||..|+++|++|+.+ ++++||+ +|+.+++|||++||+|||++|+++|.|...|+..+..+....
T Consensus 168 ~iv~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~ 247 (284)
T 4dhi_B 168 YILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYD 247 (284)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEE
T ss_pred HHHHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCccccc
Confidence 355689999999999999999999975 7999999 899999999999999999999999999998876444332233
Q ss_pred cCCCC-CCCCeEEEEEcCCCcceeeecCC
Q 019389 306 YGQEY-GKEKPIRVLYHGFGHYDALQNLG 333 (341)
Q Consensus 306 yG~e~-~~~~pI~L~Yhg~gHYDSL~~~~ 333 (341)
|.++. ...+.|+|+|.+ ||||.|+.++
T Consensus 248 fp~~~~~~~p~I~LLYrp-gHYDILY~~~ 275 (284)
T 4dhi_B 248 IPSDDQQIAPEITLLYRP-GHYDVIYKKD 275 (284)
T ss_dssp ESCCCSCCCCSEEEEEET-TEEEEEEECC
T ss_pred CCCCCCCCCCEEEEeecC-CCccccccCC
Confidence 52221 123579999998 6999998664
No 7
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.77 E-value=1.8e-18 Score=170.88 Aligned_cols=97 Identities=23% Similarity=0.335 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhhcChhhhcccccc--CHHHHHH-HHhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 019389 231 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 307 (341)
Q Consensus 231 ~h~eLR~~vvdy~~~n~e~fe~Fie~--dfdeY~~-~M~k~gtWGG~iEL~AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG 307 (341)
....||..+..||..|+++|++|+++ ++++||+ .|+..++|||++||+|||+.|+++|.|+..|+..++.+....|.
T Consensus 299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~ 378 (399)
T 4ddg_A 299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP 378 (399)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT
T ss_pred HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC
Confidence 45679999999999999999999976 6999999 99999999999999999999999999998887544444445564
Q ss_pred CCCCCCCeEEEEEcCCCcceeee
Q 019389 308 QEYGKEKPIRVLYHGFGHYDALQ 330 (341)
Q Consensus 308 ~e~~~~~pI~L~Yhg~gHYDSL~ 330 (341)
++ ..+.|+|+|.. ||||.|+
T Consensus 379 ~~--~~~~I~LLYrP-gHYDiLY 398 (399)
T 4ddg_A 379 EG--SEPKVYLLYRP-GHYDILY 398 (399)
T ss_dssp TT--CCCCCEEEEET-BEEEEEE
T ss_pred CC--CCCEEEEEEcC-CccccCC
Confidence 32 45789999986 5999986
No 8
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.76 E-value=2.3e-18 Score=159.42 Aligned_cols=114 Identities=20% Similarity=0.270 Sum_probs=97.7
Q ss_pred CCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhcccccc--CHHHHHH-HHhCCCCcCCHHHHH
Q 019389 202 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELL 278 (341)
Q Consensus 202 DGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe~Fie~--dfdeY~~-~M~k~gtWGG~iEL~ 278 (341)
||+||++++.+|... ......||..++.||..|+++|++|+++ +|++||+ .++.+++|||++||+
T Consensus 117 ~~~~L~~~fndq~~s------------~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ 184 (234)
T 2zfy_A 117 SVADLLASFNDQSTS------------DYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHII 184 (234)
T ss_dssp CHHHHHHHHTSHHHH------------HHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHH
T ss_pred CHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHH
Confidence 999999999999752 2467899999999999999999999976 7999997 699999999999999
Q ss_pred HHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeee
Q 019389 279 MASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQ 330 (341)
Q Consensus 279 AlS~ll~~~I~Vy~~d~~s~G~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~ 330 (341)
|||++|+++|.|++.|+..++.+....|+++ ..++|+|+|+. ||||+|+
T Consensus 185 ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~--~~p~I~LlY~p-gHYdiLy 233 (234)
T 2zfy_A 185 ALAQALSVSIQVEYMDRGEGGTTNPHIFPEG--SEPKVYLLYRP-GHYDILY 233 (234)
T ss_dssp HHHHHHTCCEEEEECC-CCSSCCEEEEESTT--CCCSEEEEEET-TEEEEEE
T ss_pred HHHHHhCCCEEEEEcCCCCCCcccceeCCCC--CCCeEEEEECC-CCcccCC
Confidence 9999999999999998765434445667653 35789999996 6999996
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.62 E-value=1.7e-07 Score=91.98 Aligned_cols=139 Identities=20% Similarity=0.345 Sum_probs=88.7
Q ss_pred cEEEeeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhh----hccc-------c----ccCH
Q 019389 194 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE----TEWF-------I----EGDF 258 (341)
Q Consensus 194 L~I~~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~----fe~F-------i----e~df 258 (341)
|......||||||.+|++..++ |-+..+..+|+.++.-||+.....|..+... ++.| . .++|
T Consensus 112 L~pL~t~GDGnCLLHAvSqamW---Gv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW 188 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMW---GVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEW 188 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHH---SSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHH
T ss_pred eEEEEecCCCchHHHHHhHHhc---CCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHH
Confidence 5567889999999999999999 6666777888888888887543333322110 1111 1 2457
Q ss_pred HHHHHHHhCCCC--------c--CCHHHHHHHHHhcCCCEEEEeec--C--CCCCceEEEEcCC---------CCCCCCe
Q 019389 259 DLYVSQIRKPHV--------W--GGEPELLMASHVLRMPITVYMHD--K--DAGGLISIAEYGQ---------EYGKEKP 315 (341)
Q Consensus 259 deY~~~M~k~gt--------W--GG~iEL~AlS~ll~~~I~Vy~~d--~--~s~G~i~I~~yG~---------e~~~~~p 315 (341)
++-+.. ..+.. + =-++-+.+||++++|||+||... + ..++.+..+.|+. +.-...|
T Consensus 189 ~~Iv~~-Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsP 267 (390)
T 3dkb_A 189 DNLIKM-ASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYP 267 (390)
T ss_dssp HHHHHH-TSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSC
T ss_pred HHHHHH-hCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCc
Confidence 666654 44331 1 23777999999999999999522 1 1121221122222 2234679
Q ss_pred EEEEEcCCCcceeeecCCCCCC
Q 019389 316 IRVLYHGFGHYDALQNLGHEGG 337 (341)
Q Consensus 316 I~L~Yhg~gHYDSL~~~~~~~p 337 (341)
|.|+|+. |||.+|+.-...+|
T Consensus 268 I~LgY~s-~HFsaLV~me~~~~ 288 (390)
T 3dkb_A 268 IVLGYDS-HHFVPLVTLKDSGP 288 (390)
T ss_dssp EEEEECS-SCEEEEEEBCSSSS
T ss_pred eEEEecc-CceeeeeecccCCC
Confidence 9999998 59999998665554
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.24 E-value=3.5e-06 Score=84.11 Aligned_cols=137 Identities=23% Similarity=0.371 Sum_probs=92.9
Q ss_pred cEEEeeCCCCchhhHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcChhhhc---------ccc--c----cCH
Q 019389 194 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE---------WFI--E----GDF 258 (341)
Q Consensus 194 L~I~~IpGDGNCLFRAVA~QL~~~~G~~~~~~~lrq~~h~eLR~~vvdy~~~n~e~fe---------~Fi--e----~df 258 (341)
|......||||||-+|++..++ |-+..+..||+.+++.|++.- .-|..+...+| .|. + ++|
T Consensus 189 L~pL~t~GDGNCLLHAvSqamW---GV~DrdlvLRkaL~~~L~~~~-~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW 264 (454)
T 3zrh_A 189 LYALWNRTAGDCLLDSVLQATW---GIYDKDSVLRKALHDSLHDCS-HWFYTRWKDWESWYSQSFGLHFSLREEQWQEDW 264 (454)
T ss_dssp EEEBCCCCSSCHHHHHHHHTTT---SSCCGGGHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred eeEeeecCCCccHHHHHHHHhh---cccCCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhcCCcccccHHHHHHHH
Confidence 5557889999999999999999 767777888888888888642 23443332211 232 2 357
Q ss_pred HHHHHHHhCCCCcCCHHHHHHHHHhcCCCEEEEeecCC--CCC-ceEEEEcCC---------CCCCCCeEEEEEcCCCcc
Q 019389 259 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKD--AGG-LISIAEYGQ---------EYGKEKPIRVLYHGFGHY 326 (341)
Q Consensus 259 deY~~~M~k~gtWGG~iEL~AlS~ll~~~I~Vy~~d~~--s~G-~i~I~~yG~---------e~~~~~pI~L~Yhg~gHY 326 (341)
+.-+..-..|+.==-++-+.+||++++|||+||....- ..| .+....||. +.-...||.|.|+. |||
T Consensus 265 ~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHF 343 (454)
T 3zrh_A 265 AFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHF 343 (454)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEE
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cce
Confidence 77777667787766778899999999999999974210 001 111112221 11236899999997 599
Q ss_pred eeeecCCCC
Q 019389 327 DALQNLGHE 335 (341)
Q Consensus 327 DSL~~~~~~ 335 (341)
.+|+.-...
T Consensus 344 saLV~~~~~ 352 (454)
T 3zrh_A 344 SALVAMEND 352 (454)
T ss_dssp EEEEEBCCC
T ss_pred eeeeecccc
Confidence 999887654
No 11
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=95.68 E-value=0.0048 Score=56.81 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.4
Q ss_pred EEEeeCCCCchhhHHHHHhhhh
Q 019389 195 SVIGIPGDGRCLFRAVAHGACL 216 (341)
Q Consensus 195 ~I~~IpGDGNCLFRAVA~QL~~ 216 (341)
.++.|.|||||+|||++.+...
T Consensus 44 ~~R~vRgDGNCFyRaf~f~ylE 65 (234)
T 2zfy_A 44 YIRKTRPDGNCFYRAFGFSHLE 65 (234)
T ss_dssp EEECBCCSSCHHHHHHHHHHHH
T ss_pred ceeeccCCccHHHHHHHHHHHH
Confidence 5689999999999999998764
Done!