BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019390
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55580|Y4NH_RHISN Uncharacterized protein y4nH OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02340 PE=4 SV=1
Length = 117
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLR 64
I L AA + IG +L K G LPP + + +V G + LL +
Sbjct: 6 IILVFAAGLNSCIGNILLKWGRASLPPSAGLADTF----LTPGFVGGVVFYGINVLLFAK 61
Query: 65 ALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119
AL VSV P+ +G G A+L I SH++ E + W+G+ L +G I + GG
Sbjct: 62 ALDSLEVSVAYPILAGSGFAMLIIASHYFFGEPFHLHKWIGVALVLVGIIFLARGG 117
>sp|A8FRQ9|ARNE_SHESH Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Shewanella sediminis (strain HAW-EB3)
GN=arnE PE=3 SV=1
Length = 120
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117
GA+ L LS VS+ P+ I+ + SH+ E ++ W+GITL +G I + A
Sbjct: 55 GAMTWLGVLSVWDVSMAYPLLSINFVIMLLLSHYVFNEPISVRQWIGITLIMLGVIFL-A 113
Query: 118 GGEE 121
GGE+
Sbjct: 114 GGEQ 117
>sp|Q91WC7|NPAL2_MOUSE NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2 SV=1
Length = 383
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 40 RAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC----GLAILSIFSHFYLKE 95
+ Y + W+ G L+ G A AP+++I P+ GC G AI+S+ +LKE
Sbjct: 82 KPYFKSVLWLSGVLLTALGETGNFAAYGVAPITLIAPL-GCMSVTGSAIISVL---FLKE 137
Query: 96 VMNAVDWMGITLAGIGT 112
+ A D +G+TLA GT
Sbjct: 138 NLRASDLLGMTLAFAGT 154
>sp|Q0D2K0|NIPA4_HUMAN Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3
Length = 466
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 42 YAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVD 101
Y + W GFL G + A + AP +V+ P+ + I +I S ++L+E +N +
Sbjct: 161 YLKDAMWWAGFLTMAAGEVANFGAYAFAPATVVTPLGALSVLISAILSSYFLRESLNLLG 220
Query: 102 WMG--ITLAGIGTIGVGAGGEEQ 122
+G I +AG + + A EE+
Sbjct: 221 KLGCVICVAGSTVMVIHAPEEEK 243
>sp|Q73HR8|LEPA_WOLPM Elongation factor 4 OS=Wolbachia pipientis wMel GN=lepA PE=3 SV=1
Length = 598
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 123 EPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEF---EVVEEIIYGLE-SG 178
+P+ I I + PW+ + + L L +C+ +R EQE + + + Y L S
Sbjct: 392 DPTKIEIVEEPWITATIMVPDQYLGDILSLCEERRGEQEDLSYIGNTTTALLRYKLPLSE 451
Query: 179 ILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTG------FYYQTRGLKHG 232
++F + ISK G+ L+ + LV +S +G +++R K G
Sbjct: 452 VVFDFYDRLKSISK-GYASLDWEISSYLVSQIDKLSFLINGEPVDALACIVHKSRAEKRG 510
Query: 233 RAIVVSTCAAVASIV 247
R I CA + ++
Sbjct: 511 REI----CARLKDLI 521
>sp|C0R5S3|LEPA_WOLWR Elongation factor 4 OS=Wolbachia sp. subsp. Drosophila simulans
(strain wRi) GN=lepA PE=3 SV=1
Length = 598
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 123 EPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEF---EVVEEIIYGLE-SG 178
+P+ I I + PW+ + + L L +C+ +R EQE + + + Y L S
Sbjct: 392 DPTKIEIVEEPWITATIMVPDQYLGEILSLCEERRGEQEDLSYIGNTTTALLRYKLPLSE 451
Query: 179 ILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTG------FYYQTRGLKHG 232
++F + ISK G+ L+ + LV +S +G +++R K G
Sbjct: 452 VVFDFYDRLKSISK-GYASLDWEISSYLVSQIDKLSFLINGEPVDALACIVHKSRAEKRG 510
Query: 233 RAIVVSTCAAVASIV 247
R I CA + ++
Sbjct: 511 REI----CARLKDLI 521
>sp|B4ETM0|ARNE_PROMH Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Proteus mirabilis (strain HI4320)
GN=arnE PE=3 SV=1
Length = 113
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113
FG L LR L P+S+ P+ ++++ F KE +N W+GI +G +
Sbjct: 51 FGMLFWLRLLQILPLSIAYPMLSINFIVVTLIGQFIYKETVNVKHWVGIASIMLGIV 107
>sp|Q86B14|MCM6_DICDI DNA replication licensing factor mcm6 OS=Dictyostelium discoideum
GN=mcm6 PE=3 SV=1
Length = 867
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 163 IEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVC---ISISICCSG 219
I+F +E+ GL +L FR+ I + +F+++ FP+ + V I +SICC
Sbjct: 105 IDFLHLEKFDKGLGKALLMEYFRLEPAIRQGLSIFIQKYFPSFMERVNKERIVLSICCYN 164
Query: 220 TGFYYQTRGLKHGRAIVVSTCAAVASIV-TGVVAGMLALG 258
+ R L+ R + S C+ ++ T V L +G
Sbjct: 165 VSTFVHIRELRSSR--IGSLCSISGTVTRTSEVRPELVIG 202
>sp|Q3KCB8|ARNE_PSEPF Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Pseudomonas fluorescens (strain Pf0-1)
GN=arnE PE=3 SV=1
Length = 114
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITL--AGIGTIG 114
G L+ L L + PVSV P+ I+++ + F KE ++ W G+ L G+ +G
Sbjct: 53 GLLVWLLVLQRLPVSVAYPMLSLNFVIITLIARFVFKEPVDVQHWFGVLLVIGGVALLG 111
>sp|Q6P499|NPAL3_HUMAN NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1 SV=1
Length = 406
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEV 96
K RAY K W +G + + G L + + + AP+S+I P+S + +I ++KE
Sbjct: 65 KDPRAYFKTKTWWLGLFLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEK 124
Query: 97 MNAVDWM--------GITLAGIGT 112
D++ G LA +GT
Sbjct: 125 WKPKDFLRRYVLSFVGCGLAVVGT 148
>sp|Q5RD30|NPAL3_PONAB NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2 SV=1
Length = 406
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 40 RAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNA 99
RAY K W +G + + G L + + + AP+S+I P+S + +I ++KE
Sbjct: 68 RAYFKTKTWWLGLFLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKP 127
Query: 100 VDWM--------GITLAGIGT 112
D++ G LA +GT
Sbjct: 128 KDFLRRYILSFVGCGLAVVGT 148
>sp|P31332|L_SYNV RNA-directed RNA polymerase L OS=Sonchus yellow net virus GN=L PE=2
SV=1
Length = 2116
Score = 32.3 bits (72), Expect = 5.6, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 174 GLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGR 233
G +S +L RM S + L +++G P L IS ++ YY L+ GR
Sbjct: 766 GRDSQLLKVRERMTSFRNALAKKMVKRGLPLKLEETWISHNLLMYNKIMYYSGVPLR-GR 824
Query: 234 AIVVSTCAAVASIVTGVVAGMLA-LGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLV 292
V+S + +++ + G+ + LG S T ++ L WL+ + + +S+ L+
Sbjct: 825 LKVISRLFSNSNVGVTSLGGITSTLGTGFQSISTKDYTPTLAWLISRVFTDIYISTYHLL 884
Query: 293 RHF----RWPSRRIMKSGLVRTG 311
R + +M G +R G
Sbjct: 885 NPISGTQRLDKQVLMSRGNIRQG 907
>sp|Q9H841|NPAL2_HUMAN NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2 SV=1
Length = 368
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 40 RAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQP---VSGCGLAILSIFSHFYLKEV 96
R Y + W G L+ G A AP+++I P VS G AI+S+ +LK+
Sbjct: 82 RPYFKSVLWWGGVLLMAVGETGNFAAYGFAPITLIAPLGCVSVTGSAIISVT---FLKDN 138
Query: 97 MNAVDWMGITLAGIGT 112
+ A D +G TLA GT
Sbjct: 139 LRASDLLGTTLAFAGT 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,574,673
Number of Sequences: 539616
Number of extensions: 4661357
Number of successful extensions: 14868
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 14822
Number of HSP's gapped (non-prelim): 70
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)