Query 019390
Match_columns 341
No_of_seqs 143 out of 414
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:05:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05653 Mg_trans_NIPA: Magnes 100.0 1.3E-30 2.8E-35 251.2 17.1 275 2-288 6-293 (300)
2 KOG2922 Uncharacterized conser 99.9 4.6E-24 9.9E-29 203.7 5.6 272 3-286 21-305 (335)
3 TIGR03340 phn_DUF6 phosphonate 99.3 4.2E-10 9.2E-15 106.8 22.8 259 4-285 2-281 (281)
4 PRK15430 putative chlorampheni 99.2 2.1E-08 4.6E-13 96.0 28.0 256 2-289 7-287 (296)
5 PRK11453 O-acetylserine/cystei 99.1 3.1E-07 6.8E-12 88.0 28.2 262 5-286 6-286 (299)
6 PRK11689 aromatic amino acid e 99.0 1.5E-07 3.2E-12 90.2 25.0 259 4-287 5-287 (295)
7 PLN00411 nodulin MtN21 family 99.0 1.5E-07 3.2E-12 93.3 25.2 214 59-287 92-328 (358)
8 TIGR00950 2A78 Carboxylate/Ami 99.0 3.3E-07 7.1E-12 85.0 23.9 207 50-282 52-259 (260)
9 PRK11272 putative DMT superfam 98.8 2.6E-06 5.7E-11 81.4 24.5 209 50-287 74-285 (292)
10 PRK02971 4-amino-4-deoxy-L-ara 98.8 1.4E-07 3E-12 80.8 13.8 117 3-119 2-124 (129)
11 TIGR00776 RhaT RhaT L-rhamnose 98.8 1.8E-06 3.8E-11 83.0 21.8 262 4-287 2-288 (290)
12 PRK10532 threonine and homoser 98.7 1.2E-05 2.5E-10 77.0 26.2 250 2-286 11-280 (293)
13 PRK15051 4-amino-4-deoxy-L-ara 98.5 1.6E-06 3.5E-11 72.2 12.4 103 6-116 4-108 (111)
14 TIGR00817 tpt Tpt phosphate/ph 98.5 1.5E-05 3.3E-10 76.3 19.3 67 49-116 70-136 (302)
15 TIGR00688 rarD rarD protein. T 98.5 8.8E-05 1.9E-09 69.2 24.0 226 4-256 3-255 (256)
16 PF06027 DUF914: Eukaryotic pr 98.5 2E-05 4.4E-10 77.6 20.3 74 43-116 75-150 (334)
17 PF13536 EmrE: Multidrug resis 98.5 1.2E-06 2.5E-11 72.6 9.8 67 51-118 41-107 (113)
18 COG2510 Predicted membrane pro 98.5 1.6E-06 3.5E-11 73.9 10.6 116 1-116 1-138 (140)
19 COG0697 RhaT Permeases of the 98.5 8.7E-05 1.9E-09 68.7 23.4 207 50-286 75-286 (292)
20 PF10639 UPF0546: Uncharacteri 98.4 1.7E-06 3.6E-11 72.5 9.0 103 12-114 5-111 (113)
21 PTZ00343 triose or hexose phos 98.2 0.00038 8.3E-09 68.7 23.3 206 59-286 128-347 (350)
22 PF04142 Nuc_sug_transp: Nucle 98.1 0.001 2.2E-08 62.8 20.8 202 49-262 21-234 (244)
23 PRK10452 multidrug efflux syst 97.7 0.0014 3.1E-08 55.5 13.1 94 9-116 8-102 (120)
24 PRK10532 threonine and homoser 97.7 0.001 2.2E-08 63.7 13.8 114 3-116 148-280 (293)
25 COG2962 RarD Predicted permeas 97.5 0.021 4.5E-07 55.1 20.6 212 37-287 60-283 (293)
26 TIGR00950 2A78 Carboxylate/Ami 97.5 0.0017 3.7E-08 60.1 12.9 111 2-112 127-259 (260)
27 PF00893 Multi_Drug_Res: Small 97.5 0.00086 1.9E-08 54.0 9.0 84 10-108 8-93 (93)
28 PRK09541 emrE multidrug efflux 97.4 0.0024 5.2E-08 53.3 11.2 95 7-116 6-102 (110)
29 PRK11689 aromatic amino acid e 97.4 0.0025 5.4E-08 61.1 12.9 112 3-115 156-285 (295)
30 PF08449 UAA: UAA transporter 97.4 0.056 1.2E-06 52.0 21.9 70 47-116 66-135 (303)
31 TIGR03340 phn_DUF6 phosphonate 97.3 0.0015 3.3E-08 62.0 10.5 111 4-114 145-280 (281)
32 PRK11453 O-acetylserine/cystei 97.3 0.0068 1.5E-07 58.1 13.9 114 2-115 142-285 (299)
33 PF00892 EamA: EamA-like trans 97.2 0.00076 1.6E-08 54.6 6.2 67 49-115 58-124 (126)
34 PRK11272 putative DMT superfam 97.2 0.0071 1.5E-07 57.8 13.2 114 3-116 150-284 (292)
35 PLN00411 nodulin MtN21 family 97.1 0.007 1.5E-07 60.2 12.5 114 3-116 189-327 (358)
36 PF06800 Sugar_transport: Suga 96.9 0.32 7E-06 46.7 21.4 63 54-116 54-121 (269)
37 PRK10650 multidrug efflux syst 96.9 0.022 4.9E-07 47.4 11.7 73 43-115 32-106 (109)
38 PRK11431 multidrug efflux syst 96.8 0.019 4.1E-07 47.5 11.0 68 48-115 32-100 (105)
39 COG2076 EmrE Membrane transpor 96.8 0.022 4.8E-07 47.3 11.1 69 47-115 32-101 (106)
40 COG5006 rhtA Threonine/homoser 96.6 0.67 1.4E-05 44.4 21.8 171 62-263 88-264 (292)
41 KOG2234 Predicted UDP-galactos 96.6 0.47 1E-05 47.1 20.7 63 54-116 101-163 (345)
42 PRK13499 rhamnose-proton sympo 96.6 0.88 1.9E-05 45.3 22.4 115 1-116 5-152 (345)
43 PRK15051 4-amino-4-deoxy-L-ara 96.5 0.081 1.8E-06 43.9 12.4 66 216-288 45-110 (111)
44 PRK15430 putative chlorampheni 96.4 0.054 1.2E-06 51.9 12.6 109 7-115 153-283 (296)
45 COG2510 Predicted membrane pro 96.4 0.0077 1.7E-07 51.7 5.7 67 213-286 72-138 (140)
46 COG0697 RhaT Permeases of the 96.3 0.05 1.1E-06 50.2 11.6 114 2-116 153-286 (292)
47 KOG4510 Permease of the drug/m 95.8 0.059 1.3E-06 51.8 9.1 112 4-116 39-168 (346)
48 COG5006 rhtA Threonine/homoser 95.3 0.31 6.7E-06 46.6 12.2 114 3-116 148-281 (292)
49 TIGR00776 RhaT RhaT L-rhamnose 95.2 0.23 5E-06 47.7 11.5 111 2-115 151-286 (290)
50 KOG3912 Predicted integral mem 94.3 0.088 1.9E-06 51.0 5.8 104 13-116 52-157 (372)
51 PF13536 EmrE: Multidrug resis 94.0 0.56 1.2E-05 38.4 9.5 63 219-289 46-108 (113)
52 TIGR00817 tpt Tpt phosphate/ph 93.6 0.77 1.7E-05 43.8 11.0 115 2-116 144-292 (302)
53 PF00892 EamA: EamA-like trans 93.5 0.27 5.8E-06 39.4 6.6 64 215-285 61-124 (126)
54 PRK02971 4-amino-4-deoxy-L-ara 92.2 0.85 1.9E-05 39.0 8.1 70 211-287 51-122 (129)
55 PF06027 DUF914: Eukaryotic pr 90.5 1.7 3.7E-05 43.1 9.4 115 2-116 167-304 (334)
56 PRK09541 emrE multidrug efflux 90.1 2.9 6.3E-05 34.8 9.1 66 215-287 37-103 (110)
57 PRK10650 multidrug efflux syst 89.9 3.1 6.6E-05 34.7 9.0 64 214-285 41-106 (109)
58 KOG4831 Unnamed protein [Funct 89.9 1.3 2.9E-05 36.9 6.7 76 37-113 44-121 (125)
59 PRK11431 multidrug efflux syst 89.6 3.3 7.2E-05 34.2 9.0 64 215-286 36-101 (105)
60 PF03151 TPT: Triose-phosphate 88.5 10 0.00022 31.8 11.7 111 4-114 1-150 (153)
61 PRK10452 multidrug efflux syst 87.9 4.8 0.0001 34.1 9.0 66 215-286 37-102 (120)
62 COG2076 EmrE Membrane transpor 87.7 12 0.00026 31.2 11.0 65 215-287 37-103 (106)
63 TIGR00803 nst UDP-galactose tr 86.3 19 0.00042 32.6 12.9 46 216-262 160-205 (222)
64 TIGR00803 nst UDP-galactose tr 83.5 5.6 0.00012 36.2 8.0 111 2-112 84-219 (222)
65 PTZ00343 triose or hexose phos 82.9 22 0.00048 35.0 12.4 37 79-115 310-346 (350)
66 KOG2765 Predicted membrane pro 72.1 26 0.00056 35.6 9.2 77 46-122 157-236 (416)
67 PF00893 Multi_Drug_Res: Small 71.3 21 0.00046 28.4 7.1 50 215-264 36-85 (93)
68 PF08449 UAA: UAA transporter 71.1 63 0.0014 30.9 11.6 111 3-114 154-294 (303)
69 COG2962 RarD Predicted permeas 67.3 28 0.00061 34.0 8.1 41 222-263 86-126 (293)
70 PF05653 Mg_trans_NIPA: Magnes 64.4 37 0.0008 33.0 8.5 106 170-286 8-121 (300)
71 PRK02237 hypothetical protein; 63.4 13 0.00029 31.0 4.4 35 82-116 70-104 (109)
72 PF02694 UPF0060: Uncharacteri 61.3 14 0.0003 30.8 4.1 36 81-116 67-102 (107)
73 COG3169 Uncharacterized protei 57.8 21 0.00045 29.5 4.6 58 54-113 47-111 (116)
74 COG1742 Uncharacterized conser 53.9 15 0.00033 30.5 3.2 67 50-118 38-105 (109)
75 PF06800 Sugar_transport: Suga 53.9 59 0.0013 31.4 7.7 44 242-287 79-122 (269)
76 PF08507 COPI_assoc: COPI asso 51.4 40 0.00086 28.7 5.6 40 251-297 76-115 (136)
77 TIGR00688 rarD rarD protein. T 47.3 1.5E+02 0.0032 27.2 9.3 60 219-285 81-140 (256)
78 PRK02983 lysS lysyl-tRNA synth 40.8 3.2E+02 0.0068 31.7 12.1 58 44-101 74-142 (1094)
79 PF04342 DUF486: Protein of un 39.7 33 0.00072 28.6 3.1 59 52-112 38-103 (108)
80 PF04657 DUF606: Protein of un 34.8 1.7E+02 0.0037 25.0 7.0 68 46-113 64-137 (138)
81 COG3630 OadG Na+-transporting 34.8 64 0.0014 25.8 3.9 24 316-339 61-84 (84)
82 KOG1441 Glucose-6-phosphate/ph 34.0 6.6 0.00014 38.7 -2.1 59 54-112 92-150 (316)
83 KOG1583 UDP-N-acetylglucosamin 33.9 1.7E+02 0.0037 28.8 7.4 66 48-115 67-135 (330)
84 PRK15403 multidrug efflux syst 33.3 2.9E+02 0.0063 27.3 9.4 40 37-76 209-248 (413)
85 PF15420 Abhydrolase_9_N: Alph 32.9 4E+02 0.0086 24.6 11.0 14 272-285 134-147 (208)
86 PF10639 UPF0546: Uncharacteri 30.7 2.7E+02 0.0058 23.4 7.2 60 219-284 52-111 (113)
87 KOG4314 Predicted carbohydrate 29.5 1.1E+02 0.0024 28.7 5.0 56 61-116 69-124 (290)
88 KOG1580 UDP-galactose transpor 24.2 97 0.0021 29.8 3.8 68 44-114 236-310 (337)
89 KOG1442 GDP-fucose transporter 22.0 2.7E+02 0.0058 27.5 6.4 57 55-111 112-168 (347)
90 PF04284 DUF441: Protein of un 21.8 2.6E+02 0.0055 24.5 5.7 93 173-285 44-138 (140)
91 COG3238 Uncharacterized protei 21.7 2.3E+02 0.0049 25.1 5.4 24 2-25 4-27 (150)
92 COG3447 Predicted integral mem 21.5 8E+02 0.017 24.3 13.7 61 46-107 63-129 (308)
93 PF09534 Trp_oprn_chp: Tryptop 21.4 1.7E+02 0.0037 26.7 4.8 19 268-286 124-142 (189)
94 PRK03814 oxaloacetate decarbox 20.7 2.6E+02 0.0055 22.3 5.1 26 272-297 16-42 (85)
95 PF15048 OSTbeta: Organic solu 20.6 2.1E+02 0.0046 24.5 4.8 39 255-293 24-62 (125)
96 PF03151 TPT: Triose-phosphate 20.2 5E+02 0.011 21.4 7.5 35 243-283 115-149 (153)
No 1
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.97 E-value=1.3e-30 Score=251.23 Aligned_cols=275 Identities=22% Similarity=0.326 Sum_probs=202.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchh-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhh
Q 019390 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC 80 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~ 80 (341)
++|+.+|+++++++++|..+||++..+.++.+.+. +..+.|+|||.||.|+.++++|.++|+.||+++|.++|||+++.
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~ 85 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGAL 85 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhh
Confidence 57999999999999999999999998877643333 34568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc-cCCCCCCC-CccchhhH---HH-HHHHHHHHHHHHHHHHHHhh
Q 019390 81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEP-SSISIFQL---PW-LAFVVSILFVLLNGWLRICK 154 (341)
Q Consensus 81 ~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~-a~~~~~~~-~~~~~~~~---~~-~~~~~~~~~~~l~~~~~~~~ 154 (341)
++++.++++++++|||++++||.|+.++++|..++. .++++++. +..+.... |. ........+..+.......+
T Consensus 86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~ 165 (300)
T PF05653_consen 86 SLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIFFIKP 165 (300)
T ss_pred hhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999997765 44443332 22222221 11 11111111111111122222
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhh-hhhhh--hccCccchh---hHHHHHHHHHHHHHHHHHHHHH
Q 019390 155 HQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISK-LGFVF--LEQGFPTML---VPVCISISICCSGTGFYYQTRG 228 (341)
Q Consensus 155 ~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K-~~~~~--~~~g~~~~~---~p~~l~~~v~~~~~g~~l~q~A 228 (341)
|.+++ +-+.|...+|+..+ ++...+| ++... ..+|.+++. ++..+..++.+.+.++++.|+|
T Consensus 166 r~g~~---------~i~vyi~i~sl~Gs---~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~a 233 (300)
T PF05653_consen 166 RYGRR---------NILVYISICSLIGS---FTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKA 233 (300)
T ss_pred hhccc---------ceEEEEEEeccccc---hhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 23668889999988 9999999 44222 223433333 3333445666788999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019390 229 LKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS 288 (341)
Q Consensus 229 lq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s 288 (341)
++.+++..+....-+.-...+++-|++.|+|..+.+++......+|++.++.||++++..
T Consensus 234 L~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~ 293 (300)
T PF05653_consen 234 LKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSS 293 (300)
T ss_pred HHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeecc
Confidence 999997555433334444566778888999999999999999999999999999999754
No 2
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=4.6e-24 Score=203.72 Aligned_cols=272 Identities=21% Similarity=0.277 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchh-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhH
Q 019390 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCG 81 (341)
Q Consensus 3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~ 81 (341)
.+.++|+.+++.++.+..+||++..+....+.+. +.=.+|++.|.||+|++.+++|..++++||+++|.++|.|++++|
T Consensus 21 ~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAls 100 (335)
T KOG2922|consen 21 IGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALS 100 (335)
T ss_pred eeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHH
Confidence 3678899999999999999999987754422111 112468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc-cCCCCCCCCc-cchhhH---HHHHHHHHH-HHHHHHHHHHHhhc
Q 019390 82 LAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSS-ISIFQL---PWLAFVVSI-LFVLLNGWLRICKH 155 (341)
Q Consensus 82 lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~-a~~~~~~~~~-~~~~~~---~~~~~~~~~-~~~~l~~~~~~~~~ 155 (341)
+++.+++++++++|+++..+.+|+.+|++|...++ .+|++++..+ .+.++. |...+...+ ..+.+.-.....+|
T Consensus 101 vi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~~~~~p~ 180 (335)
T KOG2922|consen 101 VIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLILIFFYAPR 180 (335)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHheeeccc
Confidence 99999999999999999999999999999997766 5555554433 333333 111111111 11111111111222
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhh-hhh--hhhccCccch---hhHHHHHHHHHHHHHHHHHHHHHh
Q 019390 156 QRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISK-LGF--VFLEQGFPTM---LVPVCISISICCSGTGFYYQTRGL 229 (341)
Q Consensus 156 ~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K-~~~--~~~~~g~~~~---~~p~~l~~~v~~~~~g~~l~q~Al 229 (341)
..+. .-+.|...+++.-. ++.+.+| ++. .++-+|.+++ .++..+..++.|...++.+.|+|+
T Consensus 181 ~g~t---------nilvyi~i~s~iGS---~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL 248 (335)
T KOG2922|consen 181 YGQT---------NILVYIGICSLIGS---LTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKAL 248 (335)
T ss_pred cccc---------ceeehhhHhhhhcc---eeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 24788899999988 9999999 443 2333443443 344445566778889999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390 230 KHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 286 (341)
Q Consensus 230 q~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 286 (341)
|..++..++...-+.--...++.|...|.|....+...+...++|+..+..|+.++.
T Consensus 249 ~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~ 305 (335)
T KOG2922|consen 249 DLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLH 305 (335)
T ss_pred HhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEee
Confidence 999976665444444445567778889999999999999999999999999999884
No 3
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.33 E-value=4.2e-10 Score=106.83 Aligned_cols=259 Identities=16% Similarity=0.139 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc--h--hHH-H--HHH-------hh--hhhHH----HHHHHHHHHHHHHH
Q 019390 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF--K--LKV-I--RAY-------AV--NKAWV----IGFLMDIFGALLML 63 (341)
Q Consensus 4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~--~--~~~-l--~~l-------lr--~p~W~----~G~~l~~~G~~~~~ 63 (341)
+..+.+.++++++...+++||..++.++... . ... + ..+ .+ ++.|| .+......++.+..
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999988776443211 0 000 0 001 11 11222 34445667788889
Q ss_pred HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHHHH
Q 019390 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILF 143 (341)
Q Consensus 64 ~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (341)
.|+...|.+.++|+...+.+++.+++..++|||+++++|.|+.++..|+..+...+.++ . ...... ..+..++
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~-~-~~~g~~---~~l~aal-- 154 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ-H-RRKAYA---WALAAAL-- 154 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc-c-chhHHH---HHHHHHH--
Confidence 99999999999999999999999999999999999999999999999998765322111 1 111110 1111111
Q ss_pred HHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHH-hhhcchhhhHHhhhhhhhhhccCccchhhHHHHHHHHHHHHHHH
Q 019390 144 VLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGF 222 (341)
Q Consensus 144 ~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG-~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p~~l~~~v~~~~~g~ 222 (341)
....+....|+...+... .........++...+ +.+. ... .+..... +. ..........+...+.+..++
T Consensus 155 -~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~-~~-~~~~~~~~~~~~~~~~s~l~~ 225 (281)
T TIGR03340 155 -GTAIYSLSDKAAALGVPA-FYSALGYLGIGFLAMGWPFL---LLY--LKRHGRS-MF-PYARQILPSATLGGLMIGGAY 225 (281)
T ss_pred -HHHHhhhhccccccchhc-ccccHHHHHHHHHHHHHHHH---HHH--HHHhccc-hh-hhHHHHHHHHHHHHHHHHHHH
Confidence 111122223332211100 000000111111111 2211 110 0000000 00 000011122345556677889
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019390 223 YYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 285 (341)
Q Consensus 223 ~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l 285 (341)
+++++++|..++..++.. ...+|++++++|..+|||+.... ...|..+++.|++++
T Consensus 226 ~l~~~al~~~~a~~~~~~-~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 226 ALVLWAMTRLPVATVVAL-RNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHhhCCceEEEee-cccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHhC
Confidence 999999999886444433 45689999999999999987432 346777888887653
No 4
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.21 E-value=2.1e-08 Score=96.05 Aligned_cols=256 Identities=12% Similarity=0.085 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hhHH-------------------HHHHhhhhhHH----HHHHHHHH
Q 019390 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV-------------------IRAYAVNKAWV----IGFLMDIF 57 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~-------------------l~~llr~p~W~----~G~~l~~~ 57 (341)
..++.+.++++++++.....-|.. .+.|+... --|. .++..++++++ .|......
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGG 85 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 457888999999999988888754 33332210 0010 00011123332 55566777
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHH
Q 019390 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF 137 (341)
Q Consensus 58 G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~~ 137 (341)
.+.+.+.++...|...+.-+..+..+++.+++..++|||+++++|.|+.+..+|++.+... +++ .. . ..+
T Consensus 86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~-~~~----~~---~--~~l 155 (296)
T PRK15430 86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT-FGS----LP---I--IAL 155 (296)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-cCC----cc---H--HHH
Confidence 8889999999999999999999999999999999999999999999999999999876521 111 11 1 111
Q ss_pred HHHHHHHHHHHHH-HHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCccchhhHHHHHHHHH
Q 019390 138 VVSILFVLLNGWL-RICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISIC 216 (341)
Q Consensus 138 ~~~~~~~~l~~~~-~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p~~l~~~v~ 216 (341)
..+ ...+.+ ...|+..++.. ........+....+..+. +. ........ +. ...+.....++...+
T Consensus 156 ~aa----~~~a~~~i~~r~~~~~~~---~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~-~~-~~~~~~~~~~~~~g~ 221 (296)
T PRK15430 156 GLA----FSFAFYGLVRKKIAVEAQ---TGMLIETMWLLPVAAIYL---FA--IADSSTSH-MG-QNPMSLNLLLIAAGI 221 (296)
T ss_pred HHH----HHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHHHHHHH---HH--HccCCccc-cc-CCcHHHHHHHHHHHH
Confidence 111 122222 22333322111 011111111111111111 00 00000000 00 011111122232333
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 019390 217 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSS 289 (341)
Q Consensus 217 ~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~ 289 (341)
.+..++++.++++++-++..++.. ...+|+.++++|.+++||+.... ...|..+++.++.....+.
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~-~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFF-QYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHHHH
Confidence 567889999999999997666554 57899999999999999987433 2456667766665555444
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.06 E-value=3.1e-07 Score=88.05 Aligned_cols=262 Identities=18% Similarity=0.172 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hhHHH------HHHhhh-hhH---HH--HHHHHHHHHHHHHHHHhh-cC
Q 019390 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKVI------RAYAVN-KAW---VI--GFLMDIFGALLMLRALSQ-AP 70 (341)
Q Consensus 5 v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~l------~~llr~-p~W---~~--G~~l~~~G~~~~~~AL~~-~P 70 (341)
..++++++++.+.....-|.+..+.++... ..|.. .-+.++ +.+ +. |+......+.+.+.++.. .|
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 85 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMP 85 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356788899999999998887766554321 11211 112221 111 22 222223334455667766 47
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHH--HHHHHHHHHHHHHH
Q 019390 71 VSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPW--LAFVVSILFVLLNG 148 (341)
Q Consensus 71 l~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~ 148 (341)
.....-+..+..+++.+++.+++|||+++++|+|+.+..+|+..+..+..+.. . ..+.+ .++..+ +....
T Consensus 86 a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~--~---~~~~G~~l~l~aa---l~~a~ 157 (299)
T PRK11453 86 AGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQ--H---VAMLGFMLTLAAA---FSWAC 157 (299)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCc--c---hhHHHHHHHHHHH---HHHHH
Confidence 77777788888899999999999999999999999999999887753321111 1 11111 111111 11222
Q ss_pred HHHHhhccchhhhhHHHHHHHHHHHH-HHHHhhhcchhhhHHhhhhhhhh--hccCccchhhHHHHHHHHHHHHHHHHHH
Q 019390 149 WLRICKHQRREQEMIEFEVVEEIIYG-LESGILFGNFRMASVISKLGFVF--LEQGFPTMLVPVCISISICCSGTGFYYQ 225 (341)
Q Consensus 149 ~~~~~~~~r~~~~~~~~~~~~a~~~g-~aaG~~fG~~~~~a~l~K~~~~~--~~~g~~~~~~p~~l~~~v~~~~~g~~l~ 225 (341)
+....|+..++.. ......-..+. +.+++.+. ..+....-.... .....+...-...+|..+++++.+++++
T Consensus 158 ~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~ 232 (299)
T PRK11453 158 GNIFNKKIMSHST--RPAVMSLVVWSALIPIIPFF---VASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIW 232 (299)
T ss_pred HHHHHHHHhcccC--ccchhHHHHHHHHHHHHHHH---HHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233343221110 00011111111 11222222 111111100000 0001111011123466678889999999
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390 226 TRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 286 (341)
Q Consensus 226 q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 286 (341)
++++|+-++..++.. ...+|+++.++|+.++||+.... ...|..+++.|+.+..
T Consensus 233 ~~~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 233 GTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 999998876555443 56799999999999999987332 3567778888876554
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.03 E-value=1.5e-07 Score=90.19 Aligned_cols=259 Identities=14% Similarity=0.087 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hhHH-----HHHHh------hhhhH---HHHHHHHHHHHHHHHHHHhh
Q 019390 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV-----IRAYA------VNKAW---VIGFLMDIFGALLMLRALSQ 68 (341)
Q Consensus 4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~-----l~~ll------r~p~W---~~G~~l~~~G~~~~~~AL~~ 68 (341)
++.+++.++++.+......|.+....|+..+ -.|. +.-.+ |+..| ..|.........++..++..
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY 84 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4667888999999999999988877766532 1111 11011 11111 12222222333334455543
Q ss_pred ----cCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCC----CccchhhHHHHHHHHH
Q 019390 69 ----APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEP----SSISIFQLPWLAFVVS 140 (341)
Q Consensus 69 ----~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~----~~~~~~~~~~~~~~~~ 140 (341)
.|...+.-+..+..+++.+++..++|||+++++|.|+.+...|+..+..++.+.+. +..+ ....+..+. .
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~-~~~~G~~~~-l 162 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIA-SNPLSYGLA-F 162 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccc-cChHHHHHH-H
Confidence 34444555567778899999999999999999999999999999877633211000 0000 001111111 1
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCccchhhH-HHHHHHHHHHH
Q 019390 141 ILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVP-VCISISICCSG 219 (341)
Q Consensus 141 ~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p-~~l~~~v~~~~ 219 (341)
....+...+....||.+++.. .. ...+ ...++.+- ....... ....... .... ..++.. +.+.
T Consensus 163 ~aa~~~A~~~v~~k~~~~~~~-----~~-~~~~-~~~~~~l~---~~~~~~~----~~~~~~~-~~~~~~l~~~~-~~t~ 226 (295)
T PRK11689 163 IGAFIWAAYCNVTRKYARGKN-----GI-TLFF-ILTALALW---IKYFLSP----QPAMVFS-LPAIIKLLLAA-AAMG 226 (295)
T ss_pred HHHHHHHHHHHHHhhccCCCC-----ch-hHHH-HHHHHHHH---HHHHHhc----CccccCC-HHHHHHHHHHH-HHHH
Confidence 111112222233455432211 01 1111 11222211 1111100 0001111 1111 122333 4577
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390 220 TGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 287 (341)
Q Consensus 220 ~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 287 (341)
.+++++++++|+.++..++.. ...+|++++++|++++||+.... ...|.++++.|++....
T Consensus 227 ~~~~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 227 FGYAAWNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 889999999999997666554 57899999999999999987432 35677888888876654
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.02 E-value=1.5e-07 Score=93.31 Aligned_cols=214 Identities=17% Similarity=0.185 Sum_probs=120.5
Q ss_pred HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHH------hccccchhhHHHHHHHHHHHhhhcc-CCCC----------
Q 019390 59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVGA-GGEE---------- 121 (341)
Q Consensus 59 ~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~------l~~rl~~~~w~gv~~~~~Gl~~l~a-~~~~---------- 121 (341)
+.++..++.+.|-...-=+..+..+++.+++.++ +|||+++++|+|+.++..|+.++.. ++..
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~ 171 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYL 171 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccc
Confidence 3457888999999999999999999999999999 6999999999999999999877542 1110
Q ss_pred ----CC-CCccchhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhh
Q 019390 122 ----QE-PSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFV 196 (341)
Q Consensus 122 ----~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~ 196 (341)
.. ........++...+......++...+..+.|+..++ +... ......+....++.+. ..+....-...
T Consensus 172 ~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~~-~~~t~~~~~~~~~~~~---~~~l~~~~~~~ 245 (358)
T PLN00411 172 NFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPAA-FTVSFLYTVCVSIVTS---MIGLVVEKNNP 245 (358)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcH-hHHHHHHHHHHHHHHH---HHHHHHccCCc
Confidence 00 000011111111111111111222222333332111 1000 0112223333444433 22222110000
Q ss_pred hhc-cCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHH
Q 019390 197 FLE-QGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGW 275 (341)
Q Consensus 197 ~~~-~g~~~~~~p~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~ 275 (341)
..+ ..+. ......+|..++ +..++++++++.+.-++..++.. ...+|++++++|+++|||+.... ..+|.
T Consensus 246 ~~~~~~~~-~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~-~~L~PV~a~llg~l~LgE~lt~~------~~iG~ 316 (358)
T PLN00411 246 SVWIIHFD-ITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIF-KPLSILIAVVMGAIFLNDSLYLG------CLIGG 316 (358)
T ss_pred ccceeccc-hHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHH-HhHHHHHHHHHHHHHhCCCCcHH------HHHHH
Confidence 000 0011 011112343343 45688899999987776655544 56799999999999999988443 35788
Q ss_pred HHHHHHHHHHhh
Q 019390 276 LLIMIGVVLLVS 287 (341)
Q Consensus 276 ~li~~gvv~l~~ 287 (341)
++++.|+.+...
T Consensus 317 ~LIl~Gv~l~~~ 328 (358)
T PLN00411 317 ILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHh
Confidence 899999877653
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.97 E-value=3.3e-07 Score=84.99 Aligned_cols=207 Identities=17% Similarity=0.112 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccch
Q 019390 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISI 129 (341)
Q Consensus 50 ~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~ 129 (341)
.|.....+.+.+...|+...|.+.+..+..+..+++.+++..++|||+++++|.|+.++.+|+..+...++.+ ..
T Consensus 52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~----~~- 126 (260)
T TIGR00950 52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLS----IN- 126 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCccc----cc-
Confidence 5556667888888999999999999999999999999999999999999999999999999998876433221 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCccchhhH-
Q 019390 130 FQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVP- 208 (341)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p- 208 (341)
..-....+...+ .........|+..++..... ....... -..+++..- .....+ .. +...+ ..+.
T Consensus 127 ~~G~~~~l~a~~---~~a~~~~~~k~~~~~~~~~~-~~~~~~~-~~~~~~~l~----~~~~~~-~~---~~~~~-~~~~~ 192 (260)
T TIGR00950 127 PAGLLLGLGSGI---SFALGTVLYKRLVKKEGPEL-LQFTGWV-LLLGALLLL----PFAWFL-GP---NPQAL-SLQWG 192 (260)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhHHhhcCCchH-HHHHHHH-HHHHHHHHH----HHHHhc-CC---CCCcc-hHHHH
Confidence 111011111111 11111222333221110000 0001100 111111111 111111 00 01011 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHH
Q 019390 209 VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGV 282 (341)
Q Consensus 209 ~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gv 282 (341)
..++..++.+..++.+++++++..++..++.. ...+|+.+.++++.++||+.+. . ...|..+++.|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~E~~~~--~----~~~G~~li~~g~ 259 (260)
T TIGR00950 193 ALLYLGLIGTALAYFLWNKGLTLVDPSAASIL-ALAEPLVALLLGLLILGETLSL--P----QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHhc
Confidence 23344455667889999999999987666554 5679999999999999998743 2 234555555553
No 9
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.81 E-value=2.6e-06 Score=81.39 Aligned_cols=209 Identities=19% Similarity=0.170 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHH-hhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccc
Q 019390 50 IGFLMDIFGALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS 128 (341)
Q Consensus 50 ~G~~l~~~G~~~~~~AL-~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~ 128 (341)
.|......++.+...++ ...|.....-+..+..+++.+++.. +|||+++++|.|+.+...|+..+..+++.+ . .
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~-~---~ 148 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLS-G---N 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccc-c---c
Confidence 34444445566777777 8888888888888899999999975 799999999999999999987775332211 1 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHH-HHhhhcchhhhHHhhhhhhhhhccCccchhh
Q 019390 129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLE-SGILFGNFRMASVISKLGFVFLEQGFPTMLV 207 (341)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~a-aG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~ 207 (341)
..-. +..+..++ +........|+..++.. .....+... +++... .... .+ ... ........+
T Consensus 149 ~~G~-l~~l~a~~---~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~-~~-~~~--~~~~~~~~~ 211 (292)
T PRK11272 149 PWGA-ILILIASA---SWAFGSVWSSRLPLPVG------MMAGAAEMLAAGVVLL---IASL-LS-GER--LTALPTLSG 211 (292)
T ss_pred hHHH-HHHHHHHH---HHHHHHHHHHhcCCCcc------hHHHHHHHHHHHHHHH---HHHH-Hc-CCc--ccccCCHHH
Confidence 1111 11111111 11111222333322111 011112211 112111 1110 11 000 000001111
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390 208 P-VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 286 (341)
Q Consensus 208 p-~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 286 (341)
. ...|..+..++.+++++++++|..++..++.. ...+|+.+.++|..++||+. ++. ...|.++++.|++.+.
T Consensus 212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~--t~~----~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETL--SPI----EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCC--cHH----HHHHHHHHHHHHHHHH
Confidence 1 22345566778899999999999986655544 57899999999999999986 332 3567788888887775
Q ss_pred h
Q 019390 287 S 287 (341)
Q Consensus 287 ~ 287 (341)
.
T Consensus 285 ~ 285 (292)
T PRK11272 285 L 285 (292)
T ss_pred H
Confidence 4
No 10
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.80 E-value=1.4e-07 Score=80.78 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhH--HHHHHhhhh--hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 019390 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK--VIRAYAVNK--AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS 78 (341)
Q Consensus 3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~--~l~~llr~p--~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~ 78 (341)
.+.++.+++.++.+.|+++-|+++.+.++.+.+.. .......+| .-+.|+...++++.+-..+++..|++...|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~ 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 36788889999999999999999988765432221 123356678 56699999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH--HhccccchhhHHHHHHHHHHHhhhccCC
Q 019390 79 GCGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (341)
Q Consensus 79 a~~lv~t~~ls~~--~l~~rl~~~~w~gv~~~~~Gl~~l~a~~ 119 (341)
....++....+.. ++||++|.++|+|+.++++|+..+..++
T Consensus 82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 8888788777775 8999999999999999999998886433
No 11
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.77 E-value=1.8e-06 Score=83.01 Aligned_cols=262 Identities=15% Similarity=0.130 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hh--H-HHH----HHhhhh-----h-HHHHHHH---HHHHHHHHHHHH
Q 019390 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KL--K-VIR----AYAVNK-----A-WVIGFLM---DIFGALLMLRAL 66 (341)
Q Consensus 4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~--~-~l~----~llr~p-----~-W~~G~~l---~~~G~~~~~~AL 66 (341)
+++++++++++++.--+..|+-- ..+.... +. . .+. ...|+| . |..|+.. ...|..+++.|.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai 80 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTLGTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSM 80 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 68899999999987776666542 1111110 00 0 010 113332 2 3446665 788889999999
Q ss_pred hhcCchhhhhhhh-hHHHHHHHHHHHHhccccchhh----HHHHHHHHHHHhhhccCCCCCCC-CccchhhHHHHHHHHH
Q 019390 67 SQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGAGGEEQEP-SSISIFQLPWLAFVVS 140 (341)
Q Consensus 67 ~~~Pl~lVQPl~a-~~lv~t~~ls~~~l~~rl~~~~----w~gv~~~~~Gl~~l~a~~~~~~~-~~~~~~~~~~~~~~~~ 140 (341)
+...+++-.|+.. ..+++..+++..++||+.++++ +.|+.++++|...+....+++.. ++...... ..... .
T Consensus 81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~-Gi~~~-l 158 (290)
T TIGR00776 81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKK-GILLL-L 158 (290)
T ss_pred HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhh-HHHHH-H
Confidence 9999999999987 8899999999999999999999 78888899997776533222111 00011111 11111 1
Q ss_pred HHHHHHHHHHH-HhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCccchhhHHHHHHHHHHHH
Q 019390 141 ILFVLLNGWLR-ICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSG 219 (341)
Q Consensus 141 ~~~~~l~~~~~-~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p~~l~~~v~~~~ 219 (341)
+ .....+.+. ..+....+. ....+-...|+.++ -....... .. .+.+..-.....+...+ ...
T Consensus 159 ~-sg~~y~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~---~~~~~~~~--~~-~~~~~~~~~~~~~~~Gi-~~~ 222 (290)
T TIGR00776 159 M-STIGYLVYVVVAKAFGVDG--------LSVLLPQAIGMVIG---GIIFNLGH--IL-AKPLKKYAILLNILPGL-MWG 222 (290)
T ss_pred H-HHHHHHHHHHHHHHcCCCc--------ceehhHHHHHHHHH---HHHHHHHH--hc-ccchHHHHHHHHHHHHH-HHH
Confidence 1 111112221 222221111 01222223333333 11111111 00 00000000111111222 235
Q ss_pred HHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390 220 TGFYYQTRGLK-HGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 287 (341)
Q Consensus 220 ~g~~l~q~Alq-~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 287 (341)
.++.+.-.+.+ .-++..+ ...+..||+++...|+.+|+|... +.......+|.++++.|+++..-
T Consensus 223 ia~~~y~~~~~~~~~~~~~-~~ls~~~pvia~~~~v~~l~E~~~--~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 223 IGNFFYLFSAQPKVGVATS-FSLSQLGVIISTLGGILILGEKKT--KREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHcccccchhhH-HHHHHHHHHHHHHHHHHHhccCCC--cceeehhHHHHHHHHHHHHHHhc
Confidence 55555555666 3333223 233667999999999999999884 44454456788888888877653
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.73 E-value=1.2e-05 Score=77.04 Aligned_cols=250 Identities=16% Similarity=0.122 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hhHH------HHHH-------hhhhhH----HHHHHHHHHHHHHHH
Q 019390 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IRAY-------AVNKAW----VIGFLMDIFGALLML 63 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~------l~~l-------lr~p~W----~~G~~l~~~G~~~~~ 63 (341)
+.++.+.+++.++++.+...-|.+....|+... -.|. +.-+ .+++.| +.|+. ......+..
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 89 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFY 89 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence 357889999999999999999988776554321 0110 0001 112223 45543 455566677
Q ss_pred HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHHHH
Q 019390 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILF 143 (341)
Q Consensus 64 ~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (341)
.++...|.....-+..+..+++.+++ +||.+ ++.+++++..|+..+...+.+.. ..+..-. ...+..+
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~~~--~~~~~G~-ll~l~aa--- 157 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQDVS--HVDLTGA-ALALGAG--- 157 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCCcc--cCChHHH-HHHHHHH---
Confidence 88888888877655555666666555 25544 44555666777765542221111 1111100 0111111
Q ss_pred HHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCcc-chhhH-HHHHHHHHHHHHH
Q 019390 144 VLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFP-TMLVP-VCISISICCSGTG 221 (341)
Q Consensus 144 ~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~-~~~~p-~~l~~~v~~~~~g 221 (341)
..........|+..++.. ...-..+...+++... ..+ . ..++... ....+ ..+|..+++++.+
T Consensus 158 ~~~a~~~v~~r~~~~~~~-----~~~~~~~~~~~~~~l~---~~~------~-~~~~~~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 158 ACWAIYILSGQRAGAEHG-----PATVAIGSLIAALIFV---PIG------A-LQAGEALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred HHHHHHHHHHHHHhccCC-----chHHHHHHHHHHHHHH---HHH------H-HccCcccCCHHHHHHHHHHHHHHHHHH
Confidence 111112222333322111 0011111122222211 100 0 0011000 11111 2356778888999
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390 222 FYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 286 (341)
Q Consensus 222 ~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 286 (341)
++++++++|+-++..++.. ...+|+++.++|+.+|||+.+. . ...|.++++.|++...
T Consensus 223 ~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~~~--~----~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETLTL--I----QWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCCcH--H----HHHHHHHHHHHHHHHH
Confidence 9999999999987666654 5789999999999999998733 3 3467777777777664
No 13
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.54 E-value=1.6e-06 Score=72.22 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhhHHHH--HHHHHHHHHHHHHHHhhcCchhhhhhhhhHHH
Q 019390 6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIG--FLMDIFGALLMLRALSQAPVSVIQPVSGCGLA 83 (341)
Q Consensus 6 ~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G--~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv 83 (341)
++-+++.++-..|+.+-|++.+..|.... -.++.++.+ +......+.+...+++..|+++..|+..++.+
T Consensus 4 ~~l~~ai~~ev~g~~~lK~s~~~~~~~~~--------~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v 75 (111)
T PRK15051 4 LTLVFASLLSVAGQLCQKQATRPVAIGKR--------RKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFV 75 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 44566777888899999998765542110 011223333 36778899999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 84 ~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
.+.+++.+++|||++.++|+|+++++.|+++++
T Consensus 76 ~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 76 WVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998774
No 14
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.49 E-value=1.5e-05 Score=76.26 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 49 ~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
..|+. ....+.++..++...+.+..|=+.++..+++.+++.+++|||+++++|.|+.+.+.|+....
T Consensus 70 ~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 70 PVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 36666 47778899999999999999999999999999999999999999999999999999997653
No 15
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.48 E-value=8.8e-05 Score=69.24 Aligned_cols=226 Identities=12% Similarity=0.062 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hhHH------HH-------------HHhh---hhhHHH----HHHHHH
Q 019390 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IR-------------AYAV---NKAWVI----GFLMDI 56 (341)
Q Consensus 4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~------l~-------------~llr---~p~W~~----G~~l~~ 56 (341)
++.+.++++++++...+..|.. .+.++... -.|. +. +..+ ++.|+. .-.+..
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 81 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIG 81 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 6788999999999999998873 33333211 0010 00 0011 122221 122255
Q ss_pred HHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHH
Q 019390 57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA 136 (341)
Q Consensus 57 ~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~ 136 (341)
....+...|+...|.....-+..+..+++.+++.+++|||+++++|.++.+...|+..+..++ ++ .. +..
T Consensus 82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-~~----~~-----~~~ 151 (256)
T TIGR00688 82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-GS----LP-----WEA 151 (256)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-CC----ch-----HHH
Confidence 667888999999999999999999999999999999999999999999999999987664221 11 11 112
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCccchhhHHHHHHHHH
Q 019390 137 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISIC 216 (341)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p~~l~~~v~ 216 (341)
+..++ +...+....||.++... .....+...-..++ ....... .. ......+...++..++...+
T Consensus 152 l~aa~---~~a~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~-~~-~~~~~~~~~~~~~~l~~~g~ 216 (256)
T TIGR00688 152 LVLAF---SFTAYGLIRKALKNTDL-------AGFCLETLSLMPVA---IYYLLQT-DF-ATVQQTNPFPIWLLLVLAGL 216 (256)
T ss_pred HHHHH---HHHHHHHHHhhcCCCCc-------chHHHHHHHHHHHH---HHHHHHh-cc-CcccccCchhHHHHHHHHHH
Confidence 22111 11112223344332111 01111111111111 1000000 00 00000111112222223334
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 019390 217 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLA 256 (341)
Q Consensus 217 ~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~v 256 (341)
.+..++++.+++++.-++..++.. ...+|++++++|..+
T Consensus 217 ~t~i~~~l~~~a~~~~~a~~~s~~-~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 217 ITGTPLLAFVIAANRLPLNLLGLL-QYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHHHHh
Confidence 577899999999999997666544 578999999988754
No 16
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.48 E-value=2e-05 Score=77.59 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=64.9
Q ss_pred hhhhhHH--HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 43 AVNKAWV--IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 43 lr~p~W~--~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
+++|.|. .=-.+|+.|=-+...||.+-+++-+|=+-..+.+++.+++..++|+|.+..+|.|+.+|+.|+.++.
T Consensus 75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~ 150 (334)
T PF06027_consen 75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV 150 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence 4455554 3335788888889999999999999999999999999999999999999999999999999988765
No 17
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.47 E-value=1.2e-06 Score=72.56 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccC
Q 019390 51 GFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (341)
Q Consensus 51 G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~ 118 (341)
|.+....++.+...|+.+.| ..+.++..++.+++.+++..++|||+++++|.++.++.+|++++...
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 44555588999999999999 58899999999999999999999999999999999999999888643
No 18
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.47 E-value=1.6e-06 Score=73.88 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-cchhHHHH-------HHh-------------hhhhHH-HHHHHHHHH
Q 019390 1 MWELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVIR-------AYA-------------VNKAWV-IGFLMDIFG 58 (341)
Q Consensus 1 ~~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~-~~~~~~l~-------~ll-------------r~p~W~-~G~~l~~~G 58 (341)
|.-.+..|+++|++++...+.-|.+-+...+. .---|.+. -.+ |+..++ .+-+.-+++
T Consensus 1 m~~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls 80 (140)
T COG2510 1 MMAAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS 80 (140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence 44467889999999999999999998754321 10001100 011 222232 333667888
Q ss_pred HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 59 ~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
+.+.+.|+..++.+.|-|+--.|++++..+|..++|||+|..+|+|+.+++.|.++++
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999999999999987653
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.47 E-value=8.7e-05 Score=68.73 Aligned_cols=207 Identities=23% Similarity=0.256 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHH-HHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccc
Q 019390 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS 128 (341)
Q Consensus 50 ~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~-~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~ 128 (341)
.+......+..+...++...|....+++..+..+++.+++. .++|||+++++|.++.....|++.+..++..+... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~--~ 152 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL--S 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--H
Confidence 66777788888899999999999999999999999999997 77799999999999888899998887544333211 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHhhccchhhhhHHHHHHHHHH-HHHHHHhhhcchhhhHHhhhhhhhhhccCcc-ch
Q 019390 129 IFQLPWLAFVVSILFVLLNGW-LRICKHQRREQEMIEFEVVEEII-YGLESGILFGNFRMASVISKLGFVFLEQGFP-TM 205 (341)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~r~~~~~~~~~~~~a~~-~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~-~~ 205 (341)
..-. +..+...+ ..+. ....++..+... ..... +... ..+ .... .. ...+.+.. ..
T Consensus 153 ~~g~-~~~l~a~~----~~a~~~~~~~~~~~~~~------~~~~~~~~~~---~~~---~~~~-~~---~~~~~~~~~~~ 211 (292)
T COG0697 153 LLGL-LLALAAAL----LWALYTALVKRLSRLGP------VTLALLLQLL---LAL---LLLL-LF---FLSGFGAPILS 211 (292)
T ss_pred HHHH-HHHHHHHH----HHHHHHHHHHHhcCCCh------HHHHHHHHHH---HHH---HHHH-HH---HhccccccCCH
Confidence 0000 11111111 1111 122232211100 01111 1111 000 0000 00 01111111 11
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 019390 206 LV-PVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL 284 (341)
Q Consensus 206 ~~-p~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~ 284 (341)
.. ....+..++.+..+++++.++++..++..++.. ...+|+.+..++..++||..+.. ...|..+++.|++.
T Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l 284 (292)
T COG0697 212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALL-SLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLL 284 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH-HHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHH
Confidence 11 222334444455789999999999886544433 47899999999999999987443 24565777777766
Q ss_pred Hh
Q 019390 285 LV 286 (341)
Q Consensus 285 l~ 286 (341)
..
T Consensus 285 ~~ 286 (292)
T COG0697 285 AS 286 (292)
T ss_pred Hh
Confidence 54
No 20
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.40 E-value=1.7e-06 Score=72.53 Aligned_cols=103 Identities=20% Similarity=0.329 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCcch---hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHH
Q 019390 12 TAGNNIGKVLQKKGTVILPPLSFK---LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI 87 (341)
Q Consensus 12 A~~~~~g~vlQ~~aa~~~p~~~~~---~~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ 87 (341)
+++-+..+-+-||+++..++...+ ...+..+++||+++.+++++..|.+..+..|+-.|+|+..|+. +++++||++
T Consensus 5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l 84 (113)
T PF10639_consen 5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL 84 (113)
T ss_pred hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence 345567778888888764432211 2455679999999999999999999999999999999999997 999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHhh
Q 019390 88 FSHFYLKEVMNAVDWMGITLAGIGTIG 114 (341)
Q Consensus 88 ls~~~l~~rl~~~~w~gv~~~~~Gl~~ 114 (341)
.+.++.+|..+++.|+|+.+++.|+.+
T Consensus 85 ~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 85 TGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHhcCcccchhHHHHHHHHHcCeee
Confidence 996666666677889999999988753
No 21
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.25 E-value=0.00038 Score=68.66 Aligned_cols=206 Identities=15% Similarity=0.143 Sum_probs=112.1
Q ss_pred HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHH
Q 019390 59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFV 138 (341)
Q Consensus 59 ~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~~~ 138 (341)
...+..++...+++..|=+-+++.+++++++.+++|||++++.|.++.+.+.|+.+...+ |.+ ..+.+..+.
T Consensus 128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~-~~~-------~~~~G~~~~ 199 (350)
T PTZ00343 128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK-ELH-------FTWLAFWCA 199 (350)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc-cch-------hHHHHHHHH
Confidence 445568999999999999999999999999999999999999999999999999886532 111 112111111
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHH--HHHHhhhcchhhhHHh-h---hhhhhhhc--cCccchhhH
Q 019390 139 VSILFVLLNGWLRICKHQRREQEMI--EFEVVEEIIYG--LESGILFGNFRMASVI-S---KLGFVFLE--QGFPTMLVP 208 (341)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~r~~~~~~--~~~~~~a~~~g--~aaG~~fG~~~~~a~l-~---K~~~~~~~--~g~~~~~~p 208 (341)
. +..+.........|+.-++.... ..... -.|. ...|.++- +--.. . +....... ..+......
T Consensus 200 l-~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~---lp~~~~~e~~~~~~~~~~~~~~~~~~~~~ 273 (350)
T PTZ00343 200 M-LSNLGSSLRSIFAKKTMKNKSEIGENLTAS--NIYMLLTLIASLIS---LPLVLFFEGKKWVPVWTNYTANMTNYTKG 273 (350)
T ss_pred H-HHHHHHHHHHHHHHHHhcccccccccCCHH--HHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHhhhcccccchH
Confidence 1 11111111112223221110000 00000 1222 22222222 11111 1 10000000 011111111
Q ss_pred HHHHHHHHHHHHHHHHHHH----HhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 019390 209 VCISISICCSGTGFYYQTR----GLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL 284 (341)
Q Consensus 209 ~~l~~~v~~~~~g~~l~q~----Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~ 284 (341)
..++. ++.+...++++|. +++.=++...+.. ....|++++++|+++|||+... . ..+|.++++.|+++
T Consensus 274 ~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~-~~lk~V~~iv~s~l~~ge~lt~--~----~~iG~~lii~Gv~l 345 (350)
T PTZ00343 274 IIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVA-NTLKRVVIIVSSIIIFQTQVTL--L----GYLGMAVAILGALL 345 (350)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHHhhhhHHHhCCCCch--H----hHHHHHHHHHHHHH
Confidence 22333 3445555666663 6665554433333 5689999999999999998733 2 35688888888877
Q ss_pred Hh
Q 019390 285 LV 286 (341)
Q Consensus 285 l~ 286 (341)
.+
T Consensus 346 Ys 347 (350)
T PTZ00343 346 YS 347 (350)
T ss_pred Hh
Confidence 54
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.05 E-value=0.001 Score=62.76 Aligned_cols=202 Identities=21% Similarity=0.188 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCC----CC
Q 019390 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ----EP 124 (341)
Q Consensus 49 ~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~----~~ 124 (341)
..=-+++.+.=.++..+++..|-+.-|=+.-..+++|++++.+++|+|+++++|.++.+.+.|+..+..++... +.
T Consensus 21 ~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~ 100 (244)
T PF04142_consen 21 AVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSS 100 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccc
Confidence 34556788999999999999999999999999999999999999999999999999999999998775221111 10
Q ss_pred Cc-----cchhhHHHHHHH-HHHHHHHHHHHH--HHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhh
Q 019390 125 SS-----ISIFQLPWLAFV-VSILFVLLNGWL--RICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFV 196 (341)
Q Consensus 125 ~~-----~~~~~~~~~~~~-~~~~~~~l~~~~--~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~ 196 (341)
.. .......+...+ +....-.+.+.+ ++.|+...+ .-.+-+-+ ..-|+.+. +.....+-...
T Consensus 101 ~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s------~~~~N~qL-~~~gi~~~---~~~~~~~~~~~ 170 (244)
T PF04142_consen 101 SSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVS------LWIQNMQL-YLFGILFN---LLALLLSDGSA 170 (244)
T ss_pred cccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchh------HHHHHHHH-HHHHHHHH---HHHHhcccccc
Confidence 00 011111111111 111111122211 223333211 11233333 23445545 44444442222
Q ss_pred hhccCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 019390 197 FLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLP 262 (341)
Q Consensus 197 ~~~~g~~~~~~p~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~ 262 (341)
..+.|+..-++++.+.+...-+..|+...- -++.-+ .+.=..++..+.++..++...+||.+..
T Consensus 171 ~~~~g~f~G~~~~~~~~i~~~a~gGllva~-v~Kyad-nI~K~fa~a~siv~t~~~s~~lf~~~~s 234 (244)
T PF04142_consen 171 ISESGFFHGYSWWVWIVIFLQAIGGLLVAF-VLKYAD-NIVKGFATAVSIVLTAVLSVLLFGFPPS 234 (244)
T ss_pred cccCCchhhcchHHHHHHHHHHHhhHHHHH-HHHHHh-HHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 234454444455554443334445554332 445444 2333444556677778888889988763
No 23
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.66 E-value=0.0014 Score=55.50 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHH
Q 019390 9 LAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI 87 (341)
Q Consensus 9 l~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ 87 (341)
+++.++=-.++...|.+.... +..+|+..+++..+.|.+-..|++..|+++..|+- ..+.+.+..
T Consensus 8 ~~Ai~~Ev~~t~~LK~s~g~~--------------~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ 73 (120)
T PRK10452 8 ALAIATEITGTLSMKWASVSE--------------GNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITL 73 (120)
T ss_pred HHHHHHHHHHHHHHHhhccCC--------------CcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 344555556777776652111 12336788889999999999999999999999996 699999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 88 FSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 88 ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
.+.++++|+++..+|.|+.++..|++++-
T Consensus 74 ig~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 74 FSVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998875
No 24
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.66 E-value=0.001 Score=63.69 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhH-H-------HHHHh------hhh-----hHHHHHHHHHHHHHHHH
Q 019390 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK-V-------IRAYA------VNK-----AWVIGFLMDIFGALLML 63 (341)
Q Consensus 3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~-~-------l~~ll------r~p-----~W~~G~~l~~~G~~~~~ 63 (341)
+++++++.++++++...++.|+..++.+.....-. . ..... .++ .++.|+...++++.++.
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~ 227 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEM 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999998887654333210000 0 00011 111 13577788889999999
Q ss_pred HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 64 ~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
.+++..|-+.+.++..++.+++.+++..+++|+++..+|+|.+++..|.+...
T Consensus 228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887765
No 25
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.54 E-value=0.021 Score=55.14 Aligned_cols=212 Identities=13% Similarity=0.207 Sum_probs=116.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCch--hh-hhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019390 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS--VI-QPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (341)
Q Consensus 37 ~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~--lV-QPl~-a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl 112 (341)
+.+++..|||+=+....+...=...|..=+-.+|-. +. ..++ -++.++..+++..++|||+++.+|+++.+..+|+
T Consensus 60 ~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV 139 (293)
T COG2962 60 RELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGV 139 (293)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 456668888877777766666666677666666544 11 1222 3455588999999999999999999999999998
Q ss_pred hhhc-cCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhh
Q 019390 113 IGVG-AGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVIS 191 (341)
Q Consensus 113 ~~l~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~ 191 (341)
.... ..+ ++||.++..+.. .+.|...|+.-. +....|.+.= +.-.+-
T Consensus 140 ~~~~~~~g-----------~lpwval~la~s----f~~Ygl~RK~~~--------------v~a~~g~~lE---~l~l~p 187 (293)
T COG2962 140 LIQTWLLG-----------SLPWVALALALS----FGLYGLLRKKLK--------------VDALTGLTLE---TLLLLP 187 (293)
T ss_pred HHHHHHcC-----------CCcHHHHHHHHH----HHHHHHHHHhcC--------------CchHHhHHHH---HHHHhH
Confidence 7643 221 123444443332 222332333211 1112222211 111110
Q ss_pred h-hhh--hhhccC-c---cchhhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 019390 192 K-LGF--VFLEQG-F---PTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 264 (341)
Q Consensus 192 K-~~~--~~~~~g-~---~~~~~p~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~ 264 (341)
- ... -..+++ + +...+...+......+..-+.+...|-++=|- ...-.....+|..=.++++.++||+.+.+
T Consensus 188 ~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpl-s~~G~lqYi~Ptl~fllav~i~~E~~~~~ 266 (293)
T COG2962 188 VALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPL-STLGFLQYIEPTLMFLLAVLIFGEPFDSD 266 (293)
T ss_pred HHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 0 000 011111 0 01111222222233345556777767676662 22222366788888999999999999665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 019390 265 PTARFSLLLGWLLIMIGVVLLVS 287 (341)
Q Consensus 265 ~~~~~~~~~g~~li~~gvv~l~~ 287 (341)
- ..+++.|-.++++.+.
T Consensus 267 ~------~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 267 Q------LVTFAFIWLALALFSI 283 (293)
T ss_pred H------HHHHHHHHHHHHHHHH
Confidence 3 4566677776666554
No 26
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.52 E-value=0.0017 Score=60.07 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc--chh-HH--------HHHHhh-------hhhH--H--HHHHHHHHHH
Q 019390 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS--FKL-KV--------IRAYAV-------NKAW--V--IGFLMDIFGA 59 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~--~~~-~~--------l~~llr-------~p~W--~--~G~~l~~~G~ 59 (341)
+.++.++++++++++...+++|+..++.+... ... +. ...+.. ...| + .|......++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999876544211 100 00 001111 1123 2 4555567899
Q ss_pred HHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019390 60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (341)
Q Consensus 60 ~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl 112 (341)
.++..++...|...+..+..++.+++.+++..++||+++..+|.|+.++..|+
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988775
No 27
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.48 E-value=0.00086 Score=54.00 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHH
Q 019390 10 AATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI 87 (341)
Q Consensus 10 ~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~-~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ 87 (341)
++.++...++...|... -.+++.|. ..+......+.+-..|++..|++++.|+. ..+.+.+.+
T Consensus 8 ~a~~~ev~~~~~lK~s~---------------g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~ 72 (93)
T PF00893_consen 8 LAILFEVVGTIALKASH---------------GFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTL 72 (93)
T ss_dssp HHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------------hhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 44455566777777631 13344444 45558889999999999999999999997 599999999
Q ss_pred HHHHHhccccchhhHHHHHHH
Q 019390 88 FSHFYLKEVMNAVDWMGITLA 108 (341)
Q Consensus 88 ls~~~l~~rl~~~~w~gv~~~ 108 (341)
.+..++||++|..+|.|+.++
T Consensus 73 ~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 73 VGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHH--------HHHHHHH
T ss_pred HHHHHhCCCCCHHHHhheeeC
Confidence 999999999999999998763
No 28
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.42 E-value=0.0024 Score=53.27 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHH
Q 019390 7 LTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKA-WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAI 84 (341)
Q Consensus 7 lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~-W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~ 84 (341)
+=+++.++--.++...|.+.. .+++. ++..++..++.|.+-..|+...|+++..|+- ..+.+.
T Consensus 6 ~L~~a~~~Ev~~~~~lK~s~g---------------f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~ 70 (110)
T PRK09541 6 YLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL 70 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---------------CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 334556676777777776521 23333 3577888899999999999999999999995 689999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 85 LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 85 t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
+.+.+.++++|+++..++.|+.++..|++++-
T Consensus 71 ~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998874
No 29
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.41 E-value=0.0025 Score=61.07 Aligned_cols=112 Identities=10% Similarity=0.048 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc----h-hHHHH-HHh-------hhh-hHH----HHHHHHHHHHHHHHH
Q 019390 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF----K-LKVIR-AYA-------VNK-AWV----IGFLMDIFGALLMLR 64 (341)
Q Consensus 3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~----~-~~~l~-~ll-------r~p-~W~----~G~~l~~~G~~~~~~ 64 (341)
.+..+++.+++|++.+++++||-.++.+.... . .-... ... -++ .|+ .| ...++++.++..
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~~ 234 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWNV 234 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 37789999999999999999997654332210 0 00000 000 111 121 23 245667888999
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390 65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (341)
Q Consensus 65 AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l 115 (341)
+++..|.+.+.++.-...+++.+++..+++|+++..+|+|++++..|+.+.
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999998887654
No 30
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.39 E-value=0.056 Score=52.03 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 47 ~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
.|+.=..++.++..++-.||.+.|...-+=+=.+.++.+.+++..++|+|.+++||.++.++++|+....
T Consensus 66 ~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~ 135 (303)
T PF08449_consen 66 KYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT 135 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence 3555557788888999999999999887777799999999999999999999999999999999998876
No 31
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.35 E-value=0.0015 Score=61.96 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCc----c-hhH-----H---HHHH--------hhhhhH----HHHHHHHHHH
Q 019390 4 LICLTLAATAGNNIGKVLQKKGTVILPPLS----F-KLK-----V---IRAY--------AVNKAW----VIGFLMDIFG 58 (341)
Q Consensus 4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~----~-~~~-----~---l~~l--------lr~p~W----~~G~~l~~~G 58 (341)
++.+++++++|++..+++.|+...+.++.. . .-. . .... ..++.| +.+.....++
T Consensus 145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~ 224 (281)
T TIGR03340 145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGA 224 (281)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999888654333211 0 000 0 0000 001122 2445566778
Q ss_pred HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019390 59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (341)
Q Consensus 59 ~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~ 114 (341)
+.+...+++..|.+.+.++.-.+.+++.+++.+++||+++..+|+|.+++..|+..
T Consensus 225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 88999999999999999999999999999999999999999999999999998765
No 32
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.26 E-value=0.0068 Score=58.11 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-chh----HH-------HHHHh-------------hhhh-HH----HH
Q 019390 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS-FKL----KV-------IRAYA-------------VNKA-WV----IG 51 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~-~~~----~~-------l~~ll-------------r~p~-W~----~G 51 (341)
+.++.+++.++++++...++|||-.++.++.. ... .. ...+. .++. |+ .|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 35889999999999999999999654322211 000 00 00000 0112 22 35
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390 52 FLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (341)
Q Consensus 52 ~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l 115 (341)
+...++++.++..++...+-.-+.++.....+++.+++..+++|+++..+|+|.++++.|+.+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 5666788888888887777777888888888899999999999999999999999888887654
No 33
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.25 E-value=0.00076 Score=54.59 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (341)
Q Consensus 49 ~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l 115 (341)
..|.+....++.+...++...|.+.+.++..++.+++.+++..++||+++.++|.|+.+++.|+..+
T Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3555556888999999999999999999999999999999999999999999999999999998764
No 34
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.19 E-value=0.0071 Score=57.77 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchh----H-H---HHHHh------h--h-hhHH----HHHHHHHHHHHH
Q 019390 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL----K-V---IRAYA------V--N-KAWV----IGFLMDIFGALL 61 (341)
Q Consensus 3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~----~-~---l~~ll------r--~-p~W~----~G~~l~~~G~~~ 61 (341)
.+..+++++++|++..++.+||..+..+.....- . . ..... . + ..|+ .|+...++++.+
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999654322110000 0 0 00000 0 1 1232 455567788899
Q ss_pred HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 62 ~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
...++...|.+.+..+..++.+++.+++..++||+++..+|+|+.++..|+..+.
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987764
No 35
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.09 E-value=0.007 Score=60.20 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-ch---------hHHHHHHhhh----hhHH-------HHHH----HHHH
Q 019390 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FK---------LKVIRAYAVN----KAWV-------IGFL----MDIF 57 (341)
Q Consensus 3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~-~~---------~~~l~~llr~----p~W~-------~G~~----l~~~ 57 (341)
++..+++.+++|+++..++|+|-.++-|+.. .. +-.+..+... +.|+ ..++ ...+
T Consensus 189 lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~l 268 (358)
T PLN00411 189 IGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSV 268 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHH
Confidence 4788999999999999999999877655421 00 0001111211 1121 1122 1234
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 58 G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
++.++..+++..+-+.+-...-+..+|+++++..+++|+++..+++|.+++..|+....
T Consensus 269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888888999999999999999999999999999999997765
No 36
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.91 E-value=0.32 Score=46.75 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHH----HHHHHHHHHhhhc
Q 019390 54 MDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVG 116 (341)
Q Consensus 54 l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl~~~~w~----gv~~~~~Gl~~l~ 116 (341)
+-.+|-.+|+.++...-++..-|+. ...|+.+.+.+.+++||.-+..+|+ +++++++|...-+
T Consensus 54 ~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 54 FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4567888899999999999999997 8899999999999999999998885 4445556655444
No 37
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.87 E-value=0.022 Score=47.45 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=61.7
Q ss_pred hhhhhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390 43 AVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (341)
Q Consensus 43 lr~p~W~-~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l 115 (341)
.++|.|. .-.+.....|.+...|++..|+.+..++- ..+.+.+.+.+.+++||+++..+|.|++++..|++++
T Consensus 32 f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 32 FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444444 34556677888889999999999999996 6899999999999999999999999999999998775
No 38
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.85 E-value=0.019 Score=47.52 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390 48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (341)
Q Consensus 48 W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l 115 (341)
+..-++.....|.+...|+...|+.+..++- ..+.+.+.+.+.+++||+++..+|.|+.++..|++++
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 4466778888899999999999999999996 5999999999999999999999999999999998876
No 39
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.022 Score=47.26 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390 47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (341)
Q Consensus 47 ~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l 115 (341)
+.+...+.+.+.|.+...|+...|+.+..++- ..+.+.+++.+..+++|+++..+|+|+.+...|++++
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 34467788899999999999999999999994 8899999999999999999999999999999998876
No 40
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.65 E-value=0.67 Score=44.36 Aligned_cols=171 Identities=17% Similarity=0.252 Sum_probs=87.2
Q ss_pred HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHH
Q 019390 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSI 141 (341)
Q Consensus 62 ~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 141 (341)
...++...|+-+.-.+=-.+-+.-+.++ .| +.+|..++++.++|+..+.-.+++.++ .|.. +..+. ..
T Consensus 88 FY~si~riPlGiAVAiEF~GPL~vA~~~----sR--r~~d~vwvaLAvlGi~lL~p~~~~~~~--lDp~---Gv~~A-l~ 155 (292)
T COG5006 88 FYLSIERIPLGIAVAIEFTGPLAVALLS----SR--RLRDFVWVALAVLGIWLLLPLGQSVWS--LDPV---GVALA-LG 155 (292)
T ss_pred HHHHHHhccchhhhhhhhccHHHHHHHh----cc--chhhHHHHHHHHHHHHhheeccCCcCc--CCHH---HHHHH-HH
Confidence 4568888899887666322322222222 22 235655666677777666532222211 1111 11111 11
Q ss_pred HHHHHHHHHHHhhccch-hhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhh-hhhhhhccCccchhhH----HHHHHHH
Q 019390 142 LFVLLNGWLRICKHQRR-EQEMIEFEVVEEIIYGLESGILFGNFRMASVISK-LGFVFLEQGFPTMLVP----VCISISI 215 (341)
Q Consensus 142 ~~~~l~~~~~~~~~~r~-~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K-~~~~~~~~g~~~~~~p----~~l~~~v 215 (341)
..++...+....+|..| .+. --|++.|.. +.++.+- ++... .| ..+++| ..+.+.+
T Consensus 156 AG~~Wa~YIv~G~r~g~~~~g----------~~g~a~gm~-----vAaviv~Pig~~~--ag-~~l~~p~ll~laLgvav 217 (292)
T COG5006 156 AGACWALYIVLGQRAGRAEHG----------TAGVAVGML-----VAALIVLPIGAAQ--AG-PALFSPSLLPLALGVAV 217 (292)
T ss_pred HhHHHHHHHHHcchhcccCCC----------chHHHHHHH-----HHHHHHhhhhhhh--cc-hhhcChHHHHHHHHHHH
Confidence 12233333333444332 211 113334443 3344433 33322 12 233444 3344445
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019390 216 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS 263 (341)
Q Consensus 216 ~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~ 263 (341)
..++.=+.+.|.|+++=+.-.-++. .--||..+.+.|.++|||+...
T Consensus 218 lSSalPYsLEmiAL~rlp~~~F~~L-lSLePa~aAl~G~i~L~e~ls~ 264 (292)
T COG5006 218 LSSALPYSLEMIALRRLPARTFGTL-LSLEPALAALSGLIFLGETLTL 264 (292)
T ss_pred HhcccchHHHHHHHhhCChhHHHHH-HHhhHHHHHHHHHHHhcCCCCH
Confidence 5556667899999998885333333 4569999999999999999833
No 41
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.47 Score=47.05 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 54 l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
++.+=--+|.++++..|-..=|...-.-..-|++++..+|+||+++++|.+..+...|+..+-
T Consensus 101 iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 101 IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 444444589999999999999999999999999999999999999999999999999987764
No 42
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.57 E-value=0.88 Score=45.30 Aligned_cols=115 Identities=17% Similarity=0.055 Sum_probs=80.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhccCC-C-----Cc-------------chhHHHHHHhhh---hhHHHHH---HHH
Q 019390 1 MWELICLTLAATAGNNIGKVLQKKGTVILP-P-----LS-------------FKLKVIRAYAVN---KAWVIGF---LMD 55 (341)
Q Consensus 1 ~~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p-~-----~~-------------~~~~~l~~llr~---p~W~~G~---~l~ 55 (341)
+.+++...+++++|++.=.+-||+ .+.=+ + .+ ...+.+..++++ .-|..++ ++=
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W 83 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW 83 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH
Confidence 357899999999999999999999 33211 0 00 011223334442 2344443 355
Q ss_pred HHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhcccc---chhhH----HHHHHHHHHHhhhc
Q 019390 56 IFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVM---NAVDW----MGITLAGIGTIGVG 116 (341)
Q Consensus 56 ~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl---~~~~w----~gv~~~~~Gl~~l~ 116 (341)
.+|-+.|..+.+..-+++-+|+. ...++++.++...+++|-- +..++ +|++++++|+.+.+
T Consensus 84 ~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s 152 (345)
T PRK13499 84 GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG 152 (345)
T ss_pred HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999995 8899999999999998654 44444 57778888887765
No 43
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.47 E-value=0.081 Score=43.94 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019390 216 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS 288 (341)
Q Consensus 216 ~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s 288 (341)
++....+++.+.++|.-|...+....+ .+++....+|..+|||+.+.. ..+|..++++|++.++.+
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~~~ 110 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILGST 110 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcc
Confidence 344567888888999988544433334 788999999999999998443 357888999999988754
No 44
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.41 E-value=0.054 Score=51.88 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCcc------hh-HHHH--HH--------hhhhh-HHH----HHHHHHHHHHHHHH
Q 019390 7 LTLAATAGNNIGKVLQKKGTVILPPLSF------KL-KVIR--AY--------AVNKA-WVI----GFLMDIFGALLMLR 64 (341)
Q Consensus 7 lAl~aA~~~~~g~vlQ~~aa~~~p~~~~------~~-~~l~--~l--------lr~p~-W~~----G~~l~~~G~~~~~~ 64 (341)
+.+.++++|+...+++||...+...... .+ .... .+ ..+|. |+. +.+...+++.+...
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~ 232 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA 232 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999997432211100 00 0000 00 01222 111 11134477888999
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390 65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (341)
Q Consensus 65 AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l 115 (341)
+++..|.+.+.++.-.+.+++.+++..+++|+++..+|.|++++..++.++
T Consensus 233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987766554
No 45
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.38 E-value=0.0077 Score=51.72 Aligned_cols=67 Identities=34% Similarity=0.481 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390 213 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 286 (341)
Q Consensus 213 ~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 286 (341)
...+++..++++.=+|+|.|++..+. |-.-.+|+..+++++++|||+.... ...|..+|++|+++++
T Consensus 72 lSGla~glswl~Yf~ALk~G~as~Vv-Pldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 72 LSGLAGGLSWLLYFRALKKGKASRVV-PLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcceEE-EcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 34456677888888999999965443 3345689999999999999997443 2467889999887765
No 46
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.35 E-value=0.05 Score=50.21 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchh-------HHH--HHHh---------hhhhHH--HHHHHHHHHHHH
Q 019390 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-------KVI--RAYA---------VNKAWV--IGFLMDIFGALL 61 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-------~~l--~~ll---------r~p~W~--~G~~l~~~G~~~ 61 (341)
+.++.++++++++++...+++++-. +.+...... ..+ .... ++..++ .|+...+.++.+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999876 322211100 000 0001 111111 344444567888
Q ss_pred HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 62 ~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
...++...|...+.++.....+++..++..+++|+++.++|+|++++..|.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999988888877654
No 47
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.76 E-value=0.059 Score=51.80 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHH---------hhh--------hhHH-HHHHHHHHHHHHHHHH
Q 019390 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAY---------AVN--------KAWV-IGFLMDIFGALLMLRA 65 (341)
Q Consensus 4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~l---------lr~--------p~W~-~G~~l~~~G~~~~~~A 65 (341)
++++.-++ ..++...++-++.....|..-...+.+.+. .++ +.|+ +=-.+-..|..++.-|
T Consensus 39 gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya 117 (346)
T KOG4510|consen 39 GLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYA 117 (346)
T ss_pred CceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHH
Confidence 44556666 888888888888776655332112222221 122 2243 1123445677778888
Q ss_pred HhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 66 LSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 66 L~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
|...|++=..=+.-.+.+||.+++..+||||.+..|-++......|++++.
T Consensus 118 ~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 118 LMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred HhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 888888766666677889999999999999999999999999999998765
No 48
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.34 E-value=0.31 Score=46.57 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCC-cchhHHHH--------------HHhhhhhHH-HHHHHHH----HHHHHH
Q 019390 3 ELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVIR--------------AYAVNKAWV-IGFLMDI----FGALLM 62 (341)
Q Consensus 3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~-~~~~~~l~--------------~llr~p~W~-~G~~l~~----~G~~~~ 62 (341)
.++.+|+.+..|.+.=-+.-||..+..+.. +...+... .-+.+|.=+ .++...+ +=|.++
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLE 227 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLE 227 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHH
Confidence 478899999999998888888887644322 11111111 122333322 4444333 345679
Q ss_pred HHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 63 LRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 63 ~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
..||+-.|-.----++++.-.+.++.+..+|||++|..||.++.+++.+..+..
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999988877654
No 49
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.23 E-value=0.23 Score=47.68 Aligned_cols=111 Identities=22% Similarity=0.141 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc----hh-----HHH--HHH-----hhhhhHH----HHHHHHHHHHHH
Q 019390 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF----KL-----KVI--RAY-----AVNKAWV----IGFLMDIFGALL 61 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~----~~-----~~l--~~l-----lr~p~W~----~G~~l~~~G~~~ 61 (341)
+.++..+++|+++|+.-.+.=|+. . .++... .- ..+ .-+ ..+..+| .|+. -.+++.+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF-G-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-C-CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 468999999999998888776654 2 222211 00 000 011 0111222 5555 5778888
Q ss_pred HHHHHh-hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhH----HHHHHHHHHHhhh
Q 019390 62 MLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGV 115 (341)
Q Consensus 62 ~~~AL~-~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w----~gv~~~~~Gl~~l 115 (341)
.+.++. ..+.+..-++...+.+++.+++.+++||+.+++|+ +|++++..|+.++
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~ 286 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANIL 286 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence 888888 88999999999999999999999999999999999 9999988887665
No 50
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=94.32 E-value=0.088 Score=50.95 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhhccCCCCcchh--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHH
Q 019390 13 AGNNIGKVLQKKGTVILPPLSFKL--KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH 90 (341)
Q Consensus 13 ~~~~~g~vlQ~~aa~~~p~~~~~~--~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~ 90 (341)
.|.++=.++..|+.++....+++. .....-++...++.=.++|+.|--++.+.|-+-..+--|=+=..-++|+.+++.
T Consensus 52 lCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst 131 (372)
T KOG3912|consen 52 LCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFST 131 (372)
T ss_pred HHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHH
Confidence 677777788888776533221110 000012333456677889999999999999999999999999999999999999
Q ss_pred HHhccccchhhHHHHHHHHHHHhhhc
Q 019390 91 FYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 91 ~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
-+|+++++.++|.|+..+.+|++.++
T Consensus 132 ~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 132 MFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred HHHhcccchhhHHHHHHHHhhhheee
Confidence 99999999999999999999998876
No 51
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=94.05 E-value=0.56 Score=38.41 Aligned_cols=63 Identities=29% Similarity=0.340 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 019390 219 GTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSS 289 (341)
Q Consensus 219 ~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~ 289 (341)
..++.++..|++..+. .++ ...-.+|+...++|...|+|+.+.. ...+.+++..|++++...+
T Consensus 46 ~~~~~~~~~a~~~~~~-~v~-~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 46 GVAYLLFFYALSYAPA-LVA-AIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHhCcH-HHH-HHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHhhhh
Confidence 3667788889998884 333 4455699999999999999988554 2457778888998887543
No 52
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=93.61 E-value=0.77 Score=43.83 Aligned_cols=115 Identities=10% Similarity=0.095 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCcchh-----HH----HHHHhh-----------h--------hhHHHH
Q 019390 2 WELICLTLAATAGNNIGKVLQKKGTV--ILPPLSFKL-----KV----IRAYAV-----------N--------KAWVIG 51 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~--~~p~~~~~~-----~~----l~~llr-----------~--------p~W~~G 51 (341)
+.|.+++++++++++..++++||..+ +.++..... .. ...... + ..|..+
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 35889999999999999999999765 322211100 00 000000 0 012112
Q ss_pred HHHHHHHH----HHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 52 FLMDIFGA----LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 52 ~~l~~~G~----~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
.......+ .+.+.++...+-.-..-.+...-+++.+++..+++|+++..+++|.+++..|+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 11111111 223345656666666666667777899999999999999999999999999987654
No 53
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=93.50 E-value=0.27 Score=39.40 Aligned_cols=64 Identities=33% Similarity=0.396 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019390 215 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 285 (341)
Q Consensus 215 v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l 285 (341)
+++...++.+.++++|..++..++.. ...+|+.+.++|..+++|+.+. . ...|..+++.|++.+
T Consensus 61 ~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~pv~~~i~~~~~~~e~~~~--~----~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 61 LLGTALAYLLYFYALKYISASIVSIL-QYLSPVFAAILGWLFLGERPSW--R----QIIGIILIIIGVVLI 124 (126)
T ss_pred ccceehHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHcCCCCCH--H----HHHHHHHHHHHHHHH
Confidence 34457788889999999886555544 4579999999999999998733 2 345667777777665
No 54
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=92.23 E-value=0.85 Score=38.98 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH--HHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390 211 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGM--LALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 287 (341)
Q Consensus 211 l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv--~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 287 (341)
++..+++...+++++..+++.-+...+.. .....++...+.+. .+|||+.... ...|.+++++|++.+..
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp-~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYP-LLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhcc
Confidence 45567788899999999999988544432 22233333444444 4899988332 45788999999999864
No 55
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=90.52 E-value=1.7 Score=43.06 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-h-hHH---H----------HHHhhhhhHHHHHHHHHHHHHH-HHHH
Q 019390 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-K-LKV---I----------RAYAVNKAWVIGFLMDIFGALL-MLRA 65 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~-~~~---l----------~~llr~p~W~~G~~l~~~G~~~-~~~A 65 (341)
.+|-+++++||.+||+.+++|++-.++.|.... . .+. + +.-+++-.|=.......+|+.+ ++.-
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~ 246 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF 246 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence 457789999999999999999999887653210 0 000 0 0112222233333444444443 5666
Q ss_pred HhhcCchh-------hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 66 LSQAPVSV-------IQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 66 L~~~Pl~l-------VQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
+.+.|+.+ +.-=+-++-..+++...++.|++++..-++|.+++.+|+++..
T Consensus 247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN 304 (334)
T ss_pred HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence 66666544 2222345566778889999999999999999999999998875
No 56
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=90.08 E-value=2.9 Score=34.78 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390 215 ICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 287 (341)
Q Consensus 215 v~~~~~g~~l~q~Alq~G~a~~vs~~~-tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 287 (341)
+++-...|++..++++.=|..++ -+. +-...+...++|+.+|||+. ++. ...|..+++.|++.+-.
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iA-Yavw~GlG~v~~~l~g~~~f~e~~--~~~----~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIA-YAIWSGVGIVLISLLSWGFFGQRL--DLP----AIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHHHHHhc
Confidence 44556788888889998773211 111 22355566889999999988 433 35688899999998843
No 57
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=89.88 E-value=3.1 Score=34.70 Aligned_cols=64 Identities=23% Similarity=0.355 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019390 214 SICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 285 (341)
Q Consensus 214 ~v~~~~~g~~l~q~Alq~G~a~~vs~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l 285 (341)
.++.-...|++..+++|.=|.- + .++ +-...+..+++|+.+|||+. ++. ...|..+++.|++.+
T Consensus 41 ~~~~~~~sf~~Ls~al~~lpvg-v-AYAvW~GiG~v~~~~ig~~~f~e~~--~~~----~~~gi~lIi~GVi~l 106 (109)
T PRK10650 41 SLAAVLAAFSALSQAVKGIDLS-V-AYALWGGFGIAATLAAGWILFGQRL--NRK----GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHhhCchH-H-HHHHHHHHHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHh
Confidence 3445567899999999976621 1 122 33344555889999999988 433 456788999999876
No 58
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=89.86 E-value=1.3 Score=36.93 Aligned_cols=76 Identities=26% Similarity=0.450 Sum_probs=64.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHh
Q 019390 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNA-VDWMGITLAGIGTI 113 (341)
Q Consensus 37 ~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl~~-~~w~gv~~~~~Gl~ 113 (341)
+.++.++.+..+|.=++++-.|..+.+.-|+-.|+++.-|+- +++..||+..+. .++|+... +...|..+++.|+.
T Consensus 44 qe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~-~LGE~~~g~~a~lGt~liv~Gi~ 121 (125)
T KOG4831|consen 44 QEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGK-ALGEETQGGLALLGTSLIVFGIW 121 (125)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHH-HhccccccceeehhhhHHhhhhh
Confidence 356678899999999999999999999999999999999996 789999999884 56777765 45568877777763
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=89.65 E-value=3.3 Score=34.20 Aligned_cols=64 Identities=22% Similarity=0.271 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390 215 ICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 286 (341)
Q Consensus 215 v~~~~~g~~l~q~Alq~G~a~~vs~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 286 (341)
+++-...|++..+++|.=|.- + .++ +-...+..+++|+.+|||+. ++. ...|..++++|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~g-v-aYAvW~GiG~v~~~lig~~~f~e~~--~~~----~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVG-T-AYAVWTGIGAVGAAITGIVLLGESA--SPA----RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcH-h-HHHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHHHhhh
Confidence 455678899999999976621 1 222 33455666889999999988 433 3567889999998874
No 60
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=88.47 E-value=10 Score=31.84 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC----CCCc-c----------------------hhH---HHHHHhh-----h-hh
Q 019390 4 LICLTLAATAGNNIGKVLQKKGTVIL----PPLS-F----------------------KLK---VIRAYAV-----N-KA 47 (341)
Q Consensus 4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~----p~~~-~----------------------~~~---~l~~llr-----~-p~ 47 (341)
|.++++.|.++.+.=.+++|+.-++. ...+ . +++ ......+ . ..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 46789999999999999988877653 1110 0 000 0000111 2 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---CchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019390 48 WVIGFLMDIFGALLMLRALSQA---PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (341)
Q Consensus 48 W~~G~~l~~~G~~~~~~AL~~~---Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~ 114 (341)
|+.-+..-..++..|....... .-..-+=++...-+++.+++..+++|+++..++.|+.++..|...
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 3333344455666665554332 222334445667788999999999999999999999999988754
No 61
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=87.86 E-value=4.8 Score=34.12 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390 215 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 286 (341)
Q Consensus 215 v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 286 (341)
+++-...|++..+++|.=|..++=..-+-...+...++|+.+|||+.... ..+|..+++.|++.+-
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 44556789999999997763222111122344555889999999988332 3568889999998884
No 62
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=87.69 E-value=12 Score=31.20 Aligned_cols=65 Identities=34% Similarity=0.385 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390 215 ICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 287 (341)
Q Consensus 215 v~~~~~g~~l~q~Alq~G~a~~vs~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 287 (341)
+++-...|++...|+|+=|.- ..++ +-...+..+++|+.+|||+. ++. ...+..++++|++.+-.
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvg--vAYAiW~GiG~v~~~l~g~~~f~E~l--~~~----~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLG--VAYAIWTGIGIVGTALVGVLLFGESL--SLI----KLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHHHHHHHHHhcCCcC--CHH----HHHHHHHHHHHHHHhhh
Confidence 344567788888899986621 1222 33445555889999999988 433 34677899999988743
No 63
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=86.25 E-value=19 Score=32.63 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 019390 216 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLP 262 (341)
Q Consensus 216 ~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~ 262 (341)
.....|-.+-.--++..+.... ...+..+++...++++.+|||+..
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~-~~~~~~~~~~s~lls~~~f~~~ls 205 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTK-SFVTALSIILSTLASVRLFDAKIS 205 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHH-HHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3344443333334454443322 223677999999999999999863
No 64
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=83.50 E-value=5.6 Score=36.20 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc----chhH---H---HHHH-------hh--------hhhHHHHHHHHH
Q 019390 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS----FKLK---V---IRAY-------AV--------NKAWVIGFLMDI 56 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~----~~~~---~---l~~l-------lr--------~p~W~~G~~l~~ 56 (341)
+.++...+.+..+.+.+.+.|++.-+..+..- .... . .... .. .+.+|.-.....
T Consensus 84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (222)
T TIGR00803 84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNV 163 (222)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHH
Confidence 34555666777778899999999865422110 0000 0 0000 00 122333334445
Q ss_pred HHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019390 57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (341)
Q Consensus 57 ~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl 112 (341)
.|..+-...+...+-...-=...++.+++.+++.++++++++...|.|+.++..|+
T Consensus 164 ~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~ 219 (222)
T TIGR00803 164 GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLAT 219 (222)
T ss_pred hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeee
Confidence 55555555555555556667778899999999999999999999999999887665
No 65
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=82.88 E-value=22 Score=35.04 Aligned_cols=37 Identities=11% Similarity=0.247 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390 79 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (341)
Q Consensus 79 a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l 115 (341)
...-+++.+++..++||+++..+++|.+++..|+...
T Consensus 310 ~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 310 TLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 3455678888999999999999999999999988654
No 66
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=72.09 E-value=26 Score=35.55 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCC
Q 019390 46 KAWVIGFLMDIFGALLML---RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ 122 (341)
Q Consensus 46 p~W~~G~~l~~~G~~~~~---~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~ 122 (341)
..=-.++.+-.+-|+.|. +||++-.++-..=+-..|=.||+.++..+..||++..+.+++.+...|++.+..++..+
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 334456666666666664 57777777777777788999999999999999999999999999999999887554433
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=71.31 E-value=21 Score=28.36 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 019390 215 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 264 (341)
Q Consensus 215 v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~ 264 (341)
+.+-...+++..+|+|+-|..++=..-+-...+.-.++|+.+|||+....
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~ 85 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS 85 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34556788999999999884333222233455666889999999988443
No 68
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=71.08 E-value=63 Score=30.90 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-------------------h--h----HHHHHHhhhhh-HHHHHHHHH
Q 019390 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-------------------K--L----KVIRAYAVNKA-WVIGFLMDI 56 (341)
Q Consensus 3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-------------------~--~----~~l~~llr~p~-W~~G~~l~~ 56 (341)
.|+.+.+++-++.+.-.+.|+|--++-+.... . . +...-..++|. |+.-+....
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 38899999999999999999998865322110 0 0 01111223444 334455556
Q ss_pred HHHHHHHHHHh----hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019390 57 FGALLMLRALS----QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (341)
Q Consensus 57 ~G~~~~~~AL~----~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~ 114 (341)
.++.+|..-.. ++|+.. .-+..+.=.++.++|..+.+++++..+|.|+.++..|+..
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~-t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTT-TIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhh-hhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 66666543332 233322 2234556778889999999999999999999998888765
No 69
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=67.35 E-value=28 Score=33.96 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019390 222 FYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS 263 (341)
Q Consensus 222 ~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~ 263 (341)
+++.-=|-.+|+.+-+|.-. ..+|++-+++|.++|+|+.+.
T Consensus 86 W~lfiWAvn~g~~leaSLGY-~InPL~~VllG~lflkErls~ 126 (293)
T COG2962 86 WWLFIWAVNNGHVLEASLGY-FINPLVNVLLGRLFLKERLSR 126 (293)
T ss_pred HHHhheecCCCchhHHHhHH-HHHHHHHHHHHHHHHHhhccH
Confidence 44555567788866666543 678999999999999999844
No 70
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=64.41 E-value=37 Score=33.04 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhhcchhhhHHhhhhhhhhhc--------cCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHH
Q 019390 170 EIIYGLESGILFGNFRMASVISKLGFVFLE--------QGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCA 241 (341)
Q Consensus 170 a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~--------~g~~~~~~p~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~ 241 (341)
.+.+++.+.++.+ .+..+-|-++...+ ++.+.+-+|. |+...+....|-..+-.||.-.|..++ +|.
T Consensus 8 Gv~lav~ss~~~~---~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~-W~~G~~~~~~g~~~~~~Al~~ap~slv-~Pl 82 (300)
T PF05653_consen 8 GVLLAVVSSIFIA---VGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPL-WWIGLLLMVLGEILNFVALGFAPASLV-APL 82 (300)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccccchhhHHHhhHH-HHHHHHHHhcchHHHHHHHHhhhHHHH-HHH
Confidence 4566677777777 77777774432211 1122223332 233334456677777778887774333 333
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390 242 AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 286 (341)
Q Consensus 242 tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 286 (341)
...+-+...++.-.+++|+.+... ..|-.+++.|.+++.
T Consensus 83 g~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 83 GALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIV 121 (300)
T ss_pred HhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeE
Confidence 445566778888899999986532 356667777776554
No 71
>PRK02237 hypothetical protein; Provisional
Probab=63.44 E-value=13 Score=31.02 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 82 LAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 82 lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
.+.+++....+.|+|+++.||+|.++|.+|+.++-
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 44555778888999999999999999999986653
No 72
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=61.26 E-value=14 Score=30.84 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 81 ~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
=.+.+++....+-|+|+++.||+|.++|.+|+.++-
T Consensus 67 fI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 67 FIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred HHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 345666778889999999999999999999987654
No 73
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.84 E-value=21 Score=29.52 Aligned_cols=58 Identities=28% Similarity=0.230 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhhcC-------chhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh
Q 019390 54 MDIFGALLMLRALSQAP-------VSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113 (341)
Q Consensus 54 l~~~G~~~~~~AL~~~P-------l~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~ 113 (341)
....-+.+|+=|=+.+. +=..|- +++|.+-.++|.+++||+++...|.|..++..++.
T Consensus 47 IA~fEY~LqvPaNRiG~~v~s~~QLK~mQE--VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~ 111 (116)
T COG3169 47 IAFFEYLLQVPANRIGHQVYSAAQLKTMQE--VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVY 111 (116)
T ss_pred HHHHHHHHhCccchhhhhhccHHHHHHHHH--HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 34445566666555553 333344 46888999999999999999999988776665553
No 74
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=53.88 E-value=15 Score=30.50 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHh-hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccC
Q 019390 50 IGFLMDIFGALLMLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (341)
Q Consensus 50 ~G~~l~~~G~~~~~~AL~-~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~ 118 (341)
....+...|+++.+..-. ++-..-- -+..=.+.++.....+-|.|+++.||+|..+|..|+.++.-+
T Consensus 38 g~~sL~lf~~llT~~~~~a~GRvYAA--YGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 38 GALSLALFGWLLTLQPAAAFGRVYAA--YGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHHHcCCchhhhhHHHH--hcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 344566667766532221 2221111 122223355566778889999999999999999997665433
No 75
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=53.88 E-value=59 Score=31.38 Aligned_cols=44 Identities=27% Similarity=0.422 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390 242 AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 287 (341)
Q Consensus 242 tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 287 (341)
|-.+.+...++|+.+|||....... ..+ ..+.++++.|+++-+.
T Consensus 79 tg~QLvg~sl~gv~~fgEW~~~~~~-~~G-~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 79 TGLQLVGTSLIGVLFFGEWTTTTQK-IIG-FLALVLIIIGVILTSY 122 (269)
T ss_pred hhHHHHHHHHHHHhhcCCCCCcchH-HHH-HHHHHHHHHHHHHhcc
Confidence 3445566688999999999865433 232 4566777777766554
No 76
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=51.44 E-value=40 Score=28.73 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhHhhhcCc
Q 019390 251 VAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRW 297 (341)
Q Consensus 251 ~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~~l~~~~p~ 297 (341)
.+|.+.+++ .......|+.+...|++-+.-...-.+.+|+
T Consensus 76 f~G~l~~~~-------~~~~~i~g~~~~~~G~~~i~l~~~~~~~~~~ 115 (136)
T PF08507_consen 76 FLGTLCLGQ-------SILSIIIGLLLFLVGVIYIILGFFCPIKEPE 115 (136)
T ss_pred HHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCch
Confidence 355566666 2344567778888887766543333333444
No 77
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=47.26 E-value=1.5e+02 Score=27.25 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019390 219 GTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 285 (341)
Q Consensus 219 ~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l 285 (341)
...+.+...++|..+...++.. ....|+...+++..+++|+....- .++..+...|++.+
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li 140 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLG-YLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHH
Confidence 3445566668887764333322 446899999999999999885432 23444455555544
No 78
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=40.78 E-value=3.2e+02 Score=31.69 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcCch-----------hhhhhhhhHHHHHHHHHHHHhccccchhh
Q 019390 44 VNKAWVIGFLMDIFGALLMLRALSQAPVS-----------VIQPVSGCGLAILSIFSHFYLKEVMNAVD 101 (341)
Q Consensus 44 r~p~W~~G~~l~~~G~~~~~~AL~~~Pl~-----------lVQPl~a~~lv~t~~ls~~~l~~rl~~~~ 101 (341)
|+-.||+-+++..++.+++++-....+.. .+.-+..+.+++.++++...+.+|..+..
T Consensus 74 ~r~Aw~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~L~~~R~~F~~~~~~~s 142 (1094)
T PRK02983 74 KRAAWWVLLAYLVLAALLNVALLALGVNTAAETFGENSLSIIGFAVHVVAIVLLVLARREFPARVRRGA 142 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccCCCCcch
Confidence 34569999999999999988766543221 22233333445555556666666644433
No 79
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=39.73 E-value=33 Score=28.62 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhcC-------chhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019390 52 FLMDIFGALLMLRALSQAP-------VSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (341)
Q Consensus 52 ~~l~~~G~~~~~~AL~~~P-------l~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl 112 (341)
......=+.+|+=|-+.+- +=..|= ++++.+-.+++.+++||+++.+...|-.+.+.++
T Consensus 38 WgIAffEY~l~VPANRiG~~~~s~~QLKi~QE--vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av 103 (108)
T PF04342_consen 38 WGIAFFEYCLQVPANRIGYQTFSLAQLKIIQE--VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAV 103 (108)
T ss_pred HHHHHHHHHHhCcchhhhccccCHHHHHHHHH--HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhh
Confidence 3345555667777776663 333343 4577888899999999999999988877665554
No 80
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=34.79 E-value=1.7e+02 Score=25.05 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=40.8
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHHHHHHHHHHH----HhccccchhhHHHHHHHHHHHh
Q 019390 46 KAWV-IGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLAILSIFSHF----YLKEVMNAVDWMGITLAGIGTI 113 (341)
Q Consensus 46 p~W~-~G~~l~~~G~~~~~~AL~~~Pl~lVQPl-~a~~lv~t~~ls~~----~l~~rl~~~~w~gv~~~~~Gl~ 113 (341)
|+|. .|=.+-..-..++.....-...+...-+ ....++.++++-++ .-+++++.++..|+.+...|+.
T Consensus 64 p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 64 PWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred ChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4443 4444444444445555543333333333 45556666666665 4678899999999998888864
No 81
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=34.78 E-value=64 Score=25.78 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=16.6
Q ss_pred CCCCCccccchhhhhhhhcccccc
Q 019390 316 KDSGPSAVIPAATLHQLITSTAKE 339 (341)
Q Consensus 316 ~~~~p~~~~~~~~~~~~~~~~~~~ 339 (341)
+|...=+++-++..||.=++.+||
T Consensus 61 ~~~~~l~~viaaavh~h~~~~~k~ 84 (84)
T COG3630 61 EDFERLAAVIAAAVHHHRRRTAKE 84 (84)
T ss_pred chhHHHHHHHHHHHHHHHhhcccC
Confidence 344444555588899988888775
No 82
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=34.05 E-value=6.6 Score=38.68 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019390 54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (341)
Q Consensus 54 l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl 112 (341)
...+|-++.=.+|...|++.+|-+-++..+++.+++..+.+|+.++..|..+..++.|+
T Consensus 92 ~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV 150 (316)
T KOG1441|consen 92 VFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGV 150 (316)
T ss_pred HHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeE
Confidence 35567777788999999999999999999999999999999999999986555555444
No 83
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=33.92 E-value=1.7e+02 Score=28.76 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---CchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390 48 WVIGFLMDIFGALLMLRALSQA---PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (341)
Q Consensus 48 W~~G~~l~~~G~~~~~~AL~~~---Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l 115 (341)
|..-..+...--+.|=.|+.+- |+..+ +=..+++.+..++..++|+|-+.++...+.++.+|++.-
T Consensus 67 Y~i~V~mFF~vnv~NN~al~f~I~~PlHiI--fRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIc 135 (330)
T KOG1583|consen 67 YAITVAMFFIVNVTNNYALKFNIPMPLHII--FRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIIC 135 (330)
T ss_pred hheehheeeeeeeeccceeeecccceEEEE--EecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeE
Confidence 4433333333334444555443 44443 236789999999999999999999999999999998764
No 84
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=33.33 E-value=2.9e+02 Score=27.25 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=27.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhh
Q 019390 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQP 76 (341)
Q Consensus 37 ~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQP 76 (341)
+..++.+|||..|.........+.....-..+.|..+.+-
T Consensus 209 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~ 248 (413)
T PRK15403 209 RDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDA 248 (413)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh
Confidence 3556788999999887777666666555556677766554
No 85
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=32.93 E-value=4e+02 Score=24.60 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 019390 272 LLGWLLIMIGVVLL 285 (341)
Q Consensus 272 ~~g~~li~~gvv~l 285 (341)
.++.++++.-++.+
T Consensus 134 ~~~~~~v~~l~~~l 147 (208)
T PF15420_consen 134 VVGVVVVVVLVVAL 147 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 86
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=30.68 E-value=2.7e+02 Score=23.38 Aligned_cols=60 Identities=27% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 019390 219 GTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL 284 (341)
Q Consensus 219 ~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~ 284 (341)
..|-.++-..+++-+...+...++...-+..++.| .++||...... ...|..+++.|+.+
T Consensus 52 q~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g-~~lge~~~~~~-----~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 52 QSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTG-WLLGEEVISRR-----TWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHH-HHhcCcccchh-----HHHHHHHHHcCeee
Confidence 34433333345555533333222333344445555 56777764422 14677788888754
No 87
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=29.50 E-value=1.1e+02 Score=28.74 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=51.5
Q ss_pred HHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 61 ~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
+.+.||-...-+.+..+.+++-.|--+++..++|.|+...+..+..+...|+++++
T Consensus 69 ~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia 124 (290)
T KOG4314|consen 69 LYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA 124 (290)
T ss_pred HHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEE
Confidence 45778889999999999999999999999999999999999999999988888886
No 88
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=24.17 E-value=97 Score=29.83 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=46.9
Q ss_pred hhhh-HHHHHHHHHHHHHHHH----HHHhhcCch--hhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019390 44 VNKA-WVIGFLMDIFGALLML----RALSQAPVS--VIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (341)
Q Consensus 44 r~p~-W~~G~~l~~~G~~~~~----~AL~~~Pl~--lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~ 114 (341)
|.|. ||-=.++.+.+.+.|. .--.|+|+. +|.. .-=.||.+.|..+++.+++.|+|+|..++..++..
T Consensus 236 RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTT---TRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 236 RHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTT---TRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred hccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEee---hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 4454 6655555555555553 223577774 3332 35568999999999999999999999888777654
No 89
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.98 E-value=2.7e+02 Score=27.51 Aligned_cols=57 Identities=12% Similarity=-0.044 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 019390 55 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIG 111 (341)
Q Consensus 55 ~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~G 111 (341)
.+.+..++=.-|++.|++.=|===.+..+|+.+++..++|++-+..-..+|.++.+|
T Consensus 112 fi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~G 168 (347)
T KOG1442|consen 112 FILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILG 168 (347)
T ss_pred eeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheeh
Confidence 444555667778888888777666788999999999999999888766555544443
No 90
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=21.82 E-value=2.6e+02 Score=24.51 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHhhhcchhhhHHhhh--hhhhhhccCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 019390 173 YGLESGILFGNFRMASVISK--LGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGV 250 (341)
Q Consensus 173 ~g~aaG~~fG~~~~~a~l~K--~~~~~~~~g~~~~~~p~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav 250 (341)
+|.--|+.+= ..++++- .+..-..+-...+.+|..+.+ +.+|+.--++..++.+.=+. .|..+...++|.
T Consensus 44 ~Gl~~GiiiL---tiaiLvPiAtGki~~~~l~~~f~s~~g~~A-i~~Gilva~l~g~Gv~Ll~~----~P~v~~gLviGT 115 (140)
T PF04284_consen 44 KGLNWGIIIL---TIAILVPIATGKIGFKDLLNSFKSWKGIIA-ILAGILVAWLGGRGVNLLKV----QPQVIVGLVIGT 115 (140)
T ss_pred hChhHhHHHH---HHHHHccccCCCcCHHHHHHHHhCHHHHHH-HHHHHHHHHHhccChHHHcc----CChhhHHHHHHH
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019390 251 VAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 285 (341)
Q Consensus 251 ~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l 285 (341)
++|+.+|+.- |.+| ++.+|+..+
T Consensus 116 IiGV~ff~Gv-pvGP-----------LIAaGi~al 138 (140)
T PF04284_consen 116 IIGVAFFKGV-PVGP-----------LIAAGITAL 138 (140)
T ss_pred HHHHHHcCCc-ccch-----------HHHHHHHHH
No 91
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.70 E-value=2.3e+02 Score=25.07 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 019390 2 WELICLTLAATAGNNIGKVLQKKG 25 (341)
Q Consensus 2 ~~~v~lAl~aA~~~~~g~vlQ~~a 25 (341)
++-+++++++-.+....+..-.|-
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL 27 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRL 27 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHH
Confidence 445555555555544444333333
No 92
>COG3447 Predicted integral membrane sensor domain [Signal transduction mechanisms]
Probab=21.52 E-value=8e+02 Score=24.28 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc---CchhhhhhhhhHHHHHHHHHHHHhcccc---chhhHHHHHH
Q 019390 46 KAWVIGFLMDIFGALLMLRALSQA---PVSVIQPVSGCGLAILSIFSHFYLKEVM---NAVDWMGITL 107 (341)
Q Consensus 46 p~W~~G~~l~~~G~~~~~~AL~~~---Pl~lVQPl~a~~lv~t~~ls~~~l~~rl---~~~~w~gv~~ 107 (341)
+.|..+......|.++.-. +-+. +-....++-.+.-++.+.+....+++.- +.+||....+
T Consensus 63 ~~WP~~~l~~~Lg~i~a~~-l~~~~~~l~~~~~~~n~leav~ga~L~r~ll~~~~~~~~L~d~l~f~v 129 (308)
T COG3447 63 RMWPGIALSCSLGNIAASI-LLFSTSSLNMAITTINILEAVVGAVLLRKLLPWYNPLQNLQDWLRFLL 129 (308)
T ss_pred hhccHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 4455666655566555322 1111 2333444444555566666655554443 3467865443
No 93
>PF09534 Trp_oprn_chp: Tryptophan-associated transmembrane protein (Trp_oprn_chp); InterPro: IPR019051 Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.
Probab=21.38 E-value=1.7e+02 Score=26.66 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019390 268 RFSLLLGWLLIMIGVVLLV 286 (341)
Q Consensus 268 ~~~~~~g~~li~~gvv~l~ 286 (341)
.+..+.|.+++++|+.++-
T Consensus 124 ~la~~gg~l~~~agvl~~~ 142 (189)
T PF09534_consen 124 WLALAGGVLALAAGVLLAR 142 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444445555554443
No 94
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=20.75 E-value=2.6e+02 Score=22.28 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhhh-hHhhhcCc
Q 019390 272 LLGWLLIMIGVVLLVSSS-RLVRHFRW 297 (341)
Q Consensus 272 ~~g~~li~~gvv~l~~s~-~l~~~~p~ 297 (341)
+.|...+..+..+|.... .+.+..|+
T Consensus 16 ~~GM~~VF~fL~lLi~~~~l~~~~~~~ 42 (85)
T PRK03814 16 LTGMGVVFIFLTLLVYLVQLMSKLIPQ 42 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344444444444444433 34455554
No 95
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=20.62 E-value=2.1e+02 Score=24.53 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=31.9
Q ss_pred HHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 019390 255 LALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVR 293 (341)
Q Consensus 255 ~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~~l~~ 293 (341)
++|--.-..+||-...+++.++.++.|+++|.++....|
T Consensus 24 lW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANR 62 (125)
T PF15048_consen 24 LWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANR 62 (125)
T ss_pred HHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 467777777888888888999999999999998875555
No 96
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=20.16 E-value=5e+02 Score=21.36 Aligned_cols=35 Identities=20% Similarity=0.504 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019390 243 VASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVV 283 (341)
Q Consensus 243 va~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv 283 (341)
....+.-.++|+++|||+. ++. ...|.++.+.|++
T Consensus 115 ~~K~~~~i~~s~~~f~~~~--t~~----~~~G~~l~~~G~~ 149 (153)
T PF03151_consen 115 NVKRILVILLSVIFFGEPI--TPL----QIIGIVLALVGVL 149 (153)
T ss_pred HHHHHHHHHHHhhhcCCcC--CHH----HHHHHHHHHHHHh
Confidence 3344555889999999986 333 2345556666654
Done!