Query 019390
Match_columns 341
No_of_seqs 143 out of 414
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.8 7.2E-08 2.4E-12 78.9 12.4 100 4-117 3-103 (110)
2 2i68_A Protein EMRE; transmemb 98.6 1.4E-07 4.8E-12 80.3 7.7 98 5-116 4-102 (137)
3 2i68_A Protein EMRE; transmemb 97.4 0.00094 3.2E-08 56.5 9.5 69 213-287 35-103 (137)
4 3b5d_A Multidrug transporter E 96.8 0.014 4.6E-07 47.2 11.3 69 213-287 35-103 (110)
5 3o7q_A L-fucose-proton symport 14.8 5.8E+02 0.02 22.8 8.5 36 37-72 249-284 (438)
6 3rlb_A THIT; S-component, ECF 9.3 4E+02 0.014 22.9 5.1 46 216-264 101-150 (192)
7 1vf5_E Protein PET L; photosyn 8.3 1.9E+02 0.0065 18.1 1.8 13 170-182 13-25 (32)
8 2zt9_E Cytochrome B6-F complex 7.8 2.2E+02 0.0075 17.7 1.9 13 170-182 12-24 (31)
9 2jp3_A FXYD domain-containing 5.9 8.3E+02 0.028 17.6 4.6 21 268-288 19-39 (67)
10 2zy9_A Mg2+ transporter MGTE; 5.3 1.8E+03 0.062 21.0 9.3 29 38-66 374-402 (473)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.79 E-value=7.2e-08 Score=78.85 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHH
Q 019390 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL 82 (341)
Q Consensus 4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl-~a~~l 82 (341)
..++-+++.++...++.+.|++. + ..|.++++.+.+...+++.+...|++..|++.+.|+ ...+.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~------~--------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~ 68 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSE------G--------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc------C--------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence 45566778888899999999863 1 113466788999999999999999999999999999 69999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHhhhcc
Q 019390 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (341)
Q Consensus 83 v~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a 117 (341)
+++.+++.+++||+++..+|.|+.+++.|++++..
T Consensus 69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988864
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.55 E-value=1.4e-07 Score=80.29 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHHH
Q 019390 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLA 83 (341)
Q Consensus 5 v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl-~a~~lv 83 (341)
.++-+++.++...++.+.|++. + ..+.++++.|++..++++.+...|++..|++.+.|+ ..++.+
T Consensus 4 ~l~Ll~ail~ev~~~~~lK~s~------g--------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 4 YIYLGGAILAEVIGTTLMKFSE------G--------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (137)
T ss_dssp CHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------c--------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 4455678888888999998863 1 123466779999999999999999999999999999 799999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390 84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (341)
Q Consensus 84 ~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~ 116 (341)
++.+++.++++|+++..+|+|+++++.|++++.
T Consensus 70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998875
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.36 E-value=0.00094 Score=56.54 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390 213 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 287 (341)
Q Consensus 213 ~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 287 (341)
..+++...++++.+++++..+...+....+...|+...++|+.+|||+.... ..+|.++++.|++++..
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 3455677889999999999996555444356789999999999999998543 35788899999998864
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.83 E-value=0.014 Score=47.19 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390 213 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 287 (341)
Q Consensus 213 ~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~ 287 (341)
..+++...++++.++++|..|...+....+-..|+...++|+.+|||+... . ..+|..+++.|++.+..
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~--~----~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL--P----AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHHHHHHhc
Confidence 334556778899999999999655544335678999999999999998833 3 35788899999998864
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=14.85 E-value=5.8e+02 Score=22.85 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=25.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCch
Q 019390 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS 72 (341)
Q Consensus 37 ~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~ 72 (341)
+..++.+|+|.++..+.........+..-..+.|.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284 (438)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999998888777766666665555566665
No 6
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=9.28 E-value=4e+02 Score=22.94 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhcCC----chhHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 019390 216 CCSGTGFYYQTRGLKHGR----AIVVSTCAAVASIVTGVVAGMLALGERLPSA 264 (341)
Q Consensus 216 ~~~~~g~~l~q~Alq~G~----a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~ 264 (341)
..+..|++..+ +.+. ........+...-+..++-|++++++-.|.+
T Consensus 101 ~~GlaG~f~~~---~~~~~~~~~~lg~~ig~~~r~~~~~isgvvff~~yaP~g 150 (192)
T 3rlb_A 101 SLGIAGLFRQK---TAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKG 150 (192)
T ss_dssp HGGGGGGGCCC---SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCTT
T ss_pred HHHHHHhheec---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 34566766554 2222 2222333355566677888999999887663
No 7
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=8.26 E-value=1.9e+02 Score=18.09 Aligned_cols=13 Identities=31% Similarity=0.979 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhc
Q 019390 170 EIIYGLESGILFG 182 (341)
Q Consensus 170 a~~~g~aaG~~fG 182 (341)
+...|+++|+.||
T Consensus 13 ~~~f~iA~GL~fG 25 (32)
T 1vf5_E 13 ALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 4778999999999
No 8
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=7.82 E-value=2.2e+02 Score=17.66 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhc
Q 019390 170 EIIYGLESGILFG 182 (341)
Q Consensus 170 a~~~g~aaG~~fG 182 (341)
+...|+++|+.||
T Consensus 12 ~~~~~iA~GL~fG 24 (31)
T 2zt9_E 12 ALFTGIAAGLLFG 24 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677888999988
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=5.88 E-value=8.3e+02 Score=17.65 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 019390 268 RFSLLLGWLLIMIGVVLLVSS 288 (341)
Q Consensus 268 ~~~~~~g~~li~~gvv~l~~s 288 (341)
+.+++++.++.+.|++++..-
T Consensus 19 igGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred ecchhhHHHHHHHHHHHHHcC
Confidence 456677788888888777643
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=5.35 E-value=1.8e+03 Score=21.00 Aligned_cols=29 Identities=17% Similarity=-0.048 Sum_probs=11.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 019390 38 VIRAYAVNKAWVIGFLMDIFGALLMLRAL 66 (341)
Q Consensus 38 ~l~~llr~p~W~~G~~l~~~G~~~~~~AL 66 (341)
...+.+++-....-+.-.++|.+..+.++
T Consensus 374 ~~~~~~~ke~~~~~~~g~~~~~~~~~~~~ 402 (473)
T 2zy9_A 374 DWRRVFLKEMGVGLLLGLTLSFLLVGKVY 402 (473)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333444444333
Done!