Query 019390
Match_columns 341
No_of_seqs 143 out of 414
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 15:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019390.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019390hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 11.1 84 0.0061 17.6 2.4 14 169-182 12-25 (32)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 7.4 2.2E+02 0.016 19.6 4.3 27 257-286 57-83 (103)
3 d2axtj1 f.23.32.1 (J:7-40) Pho 4.9 1.5E+02 0.011 17.1 1.5 11 44-54 1-11 (34)
4 d2cuja1 a.4.1.18 (A:8-108) Tra 4.3 1.5E+02 0.011 21.1 1.5 27 311-338 13-39 (101)
5 d1pv7a_ f.38.1.2 (A:) Lactose 3.3 6.9E+02 0.05 19.0 5.2 9 42-50 3-11 (417)
6 d1uspa_ d.227.1.1 (A:) Organic 2.6 5.3E+02 0.039 17.8 3.3 22 5-26 48-69 (137)
7 d1ukka_ d.227.1.1 (A:) Hypothe 2.2 6.4E+02 0.047 17.6 3.3 23 5-27 49-71 (141)
8 d3cmba1 d.347.1.1 (A:1-264) Ac 2.2 2.5E+02 0.018 22.9 0.8 15 320-334 219-233 (264)
9 d1irqa_ a.43.1.4 (A:) Omega tr 2.1 2.7E+02 0.02 16.8 0.6 9 326-334 10-18 (48)
10 d1qwia_ d.227.1.1 (A:) Osmotic 1.9 7.3E+02 0.053 17.4 3.3 21 5-25 51-71 (142)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.09 E-value=84 Score=17.63 Aligned_cols=14 Identities=29% Similarity=0.845 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhc
Q 019390 169 EEIIYGLESGILFG 182 (341)
Q Consensus 169 ~a~~~g~aaG~~fG 182 (341)
-++++|.+.|+.|+
T Consensus 12 ialffgiavgiifa 25 (32)
T d2e74e1 12 IALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheee
Confidence 46888999999987
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.36 E-value=2.2e+02 Score=19.56 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=17.5
Q ss_pred hCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390 257 LGERLPSAPTARFSLLLGWLLIMIGVVLLV 286 (341)
Q Consensus 257 lGE~~~~~~~~~~~~~~g~~li~~gvv~l~ 286 (341)
+||-.|.++.++. ++...++.|+...+
T Consensus 57 YGDi~P~t~~gr~---~~~~~~~~Gi~~~~ 83 (103)
T d1r3jc_ 57 YGDLYPVTLWGRC---VAVVVMVAGITSFG 83 (103)
T ss_dssp CSSSCCCSHHHHH---HHHHHHHHHHHHHH
T ss_pred cCccccCChhHHH---HHHHHHHHHHHHHH
Confidence 7898888876554 45555666665443
No 3
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.88 E-value=1.5e+02 Score=17.09 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=7.0
Q ss_pred hhhhHHHHHHH
Q 019390 44 VNKAWVIGFLM 54 (341)
Q Consensus 44 r~p~W~~G~~l 54 (341)
|-|.|+.|++.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 34778877653
No 4
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.30 E-value=1.5e+02 Score=21.14 Aligned_cols=27 Identities=7% Similarity=0.115 Sum_probs=18.8
Q ss_pred CCCCCCCCCCccccchhhhhhhhccccc
Q 019390 311 GSQRVKDSGPSAVIPAATLHQLITSTAK 338 (341)
Q Consensus 311 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 338 (341)
..+..|..+|-+....|.+ |+|+...|
T Consensus 13 s~~~rk~~~pldi~~~p~~-~lLs~~E~ 39 (101)
T d2cuja1 13 SNSGRRSAPPLNLTGLPGT-EKLNEKEK 39 (101)
T ss_dssp CCCCCSSCCCCCCTTSTTT-TTSCHHHH
T ss_pred CCCCCCCCCCCCccCCCCh-hhcCHHHH
Confidence 3344566678888889999 77776544
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.29 E-value=6.9e+02 Score=19.01 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=5.9
Q ss_pred HhhhhhHHH
Q 019390 42 YAVNKAWVI 50 (341)
Q Consensus 42 llr~p~W~~ 50 (341)
++|||.+|.
T Consensus 3 ~lkn~~~~~ 11 (417)
T d1pv7a_ 3 YLKNTNFWM 11 (417)
T ss_dssp HHHSHHHHH
T ss_pred cccCchHHH
Confidence 577876553
No 6
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.58 E-value=5.3e+02 Score=17.82 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 019390 5 ICLTLAATAGNNIGKVLQKKGT 26 (341)
Q Consensus 5 v~lAl~aA~~~~~g~vlQ~~aa 26 (341)
++.|+.+++...+..++++++.
T Consensus 48 llaAlasC~~~t~~~~a~~~gi 69 (137)
T d1uspa_ 48 FAAGYAACFQGALGVVSRRQKI 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 4568888888888889998886
No 7
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=2.18 E-value=6.4e+02 Score=17.59 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 019390 5 ICLTLAATAGNNIGKVLQKKGTV 27 (341)
Q Consensus 5 v~lAl~aA~~~~~g~vlQ~~aa~ 27 (341)
++.|+.+++...+..++|+++..
T Consensus 49 llaala~C~~~~~~~~a~~~g~~ 71 (141)
T d1ukka_ 49 IAAAHAGCFSMALAASLEREGFP 71 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45678888888888899998763
No 8
>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase {Methanoculleus marisnigri [TaxId: 2198]}
Probab=2.16 E-value=2.5e+02 Score=22.86 Aligned_cols=15 Identities=0% Similarity=0.033 Sum_probs=11.6
Q ss_pred Cccccchhhhhhhhc
Q 019390 320 PSAVIPAATLHQLIT 334 (341)
Q Consensus 320 p~~~~~~~~~~~~~~ 334 (341)
++.-+|.||+||.+.
T Consensus 219 ~~~~e~~Pt~~hi~~ 233 (264)
T d3cmba1 219 ELTPMQSPAQYYIVN 233 (264)
T ss_dssp CCCTTTSTTTHHHHH
T ss_pred cCCcccccchhhccc
Confidence 556677899999874
No 9
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.06 E-value=2.7e+02 Score=16.83 Aligned_cols=9 Identities=44% Similarity=0.737 Sum_probs=6.7
Q ss_pred hhhhhhhhc
Q 019390 326 AATLHQLIT 334 (341)
Q Consensus 326 ~~~~~~~~~ 334 (341)
-+.+||.|.
T Consensus 10 radlhhiik 18 (48)
T d1irqa_ 10 RADLHHIIK 18 (48)
T ss_dssp EHHHHHHHH
T ss_pred eecceeeeE
Confidence 367899875
No 10
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC {Escherichia coli [TaxId: 562]}
Probab=1.94 E-value=7.3e+02 Score=17.37 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 019390 5 ICLTLAATAGNNIGKVLQKKG 25 (341)
Q Consensus 5 v~lAl~aA~~~~~g~vlQ~~a 25 (341)
++.|+.+++...+..++|+++
T Consensus 51 llaAlasC~~~~~~~~a~~~~ 71 (142)
T d1qwia_ 51 IGAAHAACFSMALSLMLGEAG 71 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Done!