Query 019391
Match_columns 341
No_of_seqs 302 out of 1884
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 15:21:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 6.1E-20 2.1E-24 139.0 5.6 58 159-217 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 1.2E-19 4.2E-24 137.3 7.0 60 251-310 2-62 (63)
3 3igm_B PF14_0633 protein; AP2 94.8 0.015 5.1E-07 45.3 2.7 29 155-183 3-31 (77)
4 1u3e_M HNH homing endonuclease 84.4 0.1 3.4E-06 45.4 -1.8 88 197-292 55-146 (174)
5 3igm_B PF14_0633 protein; AP2 82.5 1.1 3.9E-05 34.7 3.6 28 247-276 3-31 (77)
6 3eik_A Tata-box-binding protei 80.1 25 0.00086 32.0 12.4 134 158-298 75-212 (218)
7 1u3e_M HNH homing endonuclease 79.0 0.074 2.5E-06 46.2 -4.7 38 160-199 109-146 (174)
8 2z8u_A Tata-box-binding protei 56.7 1E+02 0.0036 27.1 11.2 133 158-298 45-182 (188)
9 1ais_A TBP, protein (tata-bind 56.0 1E+02 0.0036 26.9 10.9 133 158-298 41-178 (182)
10 1z1b_A Integrase; protein-DNA 45.9 27 0.00092 31.6 5.4 41 162-205 15-55 (356)
11 1z1b_A Integrase; protein-DNA 44.4 31 0.0011 31.1 5.6 42 253-298 14-55 (356)
12 1mp9_A Tata-binding protein; t 40.3 2E+02 0.0067 25.5 12.7 133 158-298 45-182 (198)
13 1ytb_A Protein (tata binding p 35.8 2.2E+02 0.0075 24.8 10.0 133 158-297 37-173 (180)
14 1rm1_A Tata-box binding protei 27.4 3.6E+02 0.012 24.6 10.1 133 158-297 97-233 (240)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.79 E-value=6.1e-20 Score=139.00 Aligned_cols=58 Identities=48% Similarity=0.823 Sum_probs=54.0
Q ss_pred CeeEeEEecCCCeEEEEeecC---CeeEEeCCCCCHHHHHHHHHHHHHHhcCCccccccccc
Q 019391 159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE 217 (341)
Q Consensus 159 ~YRGV~~~r~~gKW~A~I~~~---gKri~LGtF~TaEeAArAYD~Aai~l~G~~A~~NFp~s 217 (341)
+||||++ +++|||+|+|+++ ++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999997 5799999999984 78999999999999999999999999999999999954
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.79 E-value=1.2e-19 Score=137.33 Aligned_cols=60 Identities=38% Similarity=0.592 Sum_probs=55.4
Q ss_pred cccCeeEeecceEEEEeceec-CceeEEeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 019391 251 KYRGVTLHKCGRWEARMGQFL-GKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS 310 (341)
Q Consensus 251 ~yrGV~~~k~GkW~ArI~~~~-~~k~~~LG~FdTeeEAArAYDkAaikl~G~~A~tNFp~s 310 (341)
+|+||++++.|||+|+|+... +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999988999999997543 478999999999999999999999999999999999976
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=94.82 E-value=0.015 Score=45.26 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.5
Q ss_pred CCCCCeeEeEEecCCCeEEEEeecCCeeE
Q 019391 155 SRSSQYRGVTFYRRTGRWESHIWDSGKQV 183 (341)
Q Consensus 155 ~~sS~YRGV~~~r~~gKW~A~I~~~gKri 183 (341)
..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 46799999999999999999999988754
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=84.36 E-value=0.1 Score=45.35 Aligned_cols=88 Identities=9% Similarity=-0.003 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCccc---cccccc-cchhhhhhccccchhhhhhhhccccCCCCCCCccccCeeEeecceEEEEeceecC
Q 019391 197 AYDRAAIKFRGAEAD---INFSIE-DYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG 272 (341)
Q Consensus 197 AYD~Aai~l~G~~A~---~NFp~s-~Y~~el~~l~~lskEE~V~~LRRqS~g~~r~sS~yrGV~~~k~GkW~ArI~~~~~ 272 (341)
++...+..|.|.... .++-.. .....+..|.-++..|.......... . ..++||.+.+.++|.+.| ...
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~---~--~~~~g~~~~~~~k~~~vi--~~~ 127 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT---L--NVSKAQQIAKIKNQKPII--VIS 127 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC---C--CCHHHHHHHHHHTCCCEE--EEC
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc---c--cceeeeeeccCCCCceEE--EEc
Confidence 555556667664321 222211 12345667777888777665444321 1 124677652356799988 455
Q ss_pred ceeEEeccCCCHHHHHHHHH
Q 019391 273 KKYVYLGLFDTEVEAARAYD 292 (341)
Q Consensus 273 ~k~~~LG~FdTeeEAArAYD 292 (341)
+..+||.|+|.+|||++|.
T Consensus 128 -~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 128 -PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp -TTSCEEEESCHHHHHHHHT
T ss_pred -CCceEEeeCCHHHHHHHHC
Confidence 6678999999999999964
No 5
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=82.46 E-value=1.1 Score=34.73 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=21.3
Q ss_pred CCCccccCeeEee-cceEEEEeceecCceeE
Q 019391 247 RGSSKYRGVTLHK-CGRWEARMGQFLGKKYV 276 (341)
Q Consensus 247 r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~ 276 (341)
..+|+|.||+|.+ .+.|.|.- ..++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W--~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFF--YDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEE--EETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEE--ecCCeEe
Confidence 3568999999988 78999997 4555543
No 6
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=80.07 E-value=25 Score=32.03 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=83.8
Q ss_pred CCeeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHhcCCccccc---cccccchhhhhhccccchhhh
Q 019391 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADIN---FSIEDYEDDLKQMSNLTKEEF 234 (341)
Q Consensus 158 S~YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l~G~~A~~N---Fp~s~Y~~el~~l~~lskEE~ 234 (341)
.+|-||.++-+.-+-.+-|+..||-+..|. .++++|..|.++.+..+....-... |...........-..+..+++
T Consensus 75 e~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~l 153 (218)
T 3eik_A 75 KRFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGL 153 (218)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred ccCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHH
Confidence 357889887788899999999999888876 5688899998888776653221222 221111110011112222333
Q ss_pred hhhhccccCCCCCCCccccCeeEee-cceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHHh
Q 019391 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (341)
Q Consensus 235 V~~LRRqS~g~~r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaikl 298 (341)
......... =....|.|+.++- .-+=...| +..||-+-.|. .+++|+..|++.-.-.|
T Consensus 154 a~~~~~~~~---YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 154 AYAHSNYCS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp HHHSTTTEE---CCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhccCCcE---ECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 322222221 1224788988765 45667777 77888888887 78999999999865544
No 7
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=79.01 E-value=0.074 Score=46.22 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=31.7
Q ss_pred eeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHH
Q 019391 160 YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYD 199 (341)
Q Consensus 160 YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD 199 (341)
++||.+ +..++|.+.|... +.++||.|.|.+|||++|.
T Consensus 109 ~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 468876 6677899999888 7788999999999999863
No 8
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=56.66 E-value=1e+02 Score=27.09 Aligned_cols=133 Identities=16% Similarity=0.196 Sum_probs=76.4
Q ss_pred CCeeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHhc--CCc-c-ccccccccchhhhhhccccchhh
Q 019391 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAE-A-DINFSIEDYEDDLKQMSNLTKEE 233 (341)
Q Consensus 158 S~YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l~--G~~-A-~~NFp~s~Y~~el~~l~~lskEE 233 (341)
.+|-||.++-+.-+=.+-|+..||-+--|.. ++++|..|..+.+..+. |-. . ..+|.+..--.....-..+..++
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (188)
T 2z8u_A 45 EQFPGLVCRLSVPKVALLIFRSGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDD 123 (188)
T ss_dssp ----CEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHH
T ss_pred CCcccEEEEcCCCcEEEEEeCCCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHHH
Confidence 4688998877888889999999998877764 55677777776655543 211 1 12332211111000011222233
Q ss_pred hhhhhccccCCCCCCCccccCeeEee-cceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHHh
Q 019391 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (341)
Q Consensus 234 ~V~~LRRqS~g~~r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaikl 298 (341)
+...++ ... =....|.|+.++- .-+=.+-| +..||-+-.|. .+++|+..|+++....|
T Consensus 124 la~~~~-~~e---YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 124 IALMVE-GTE---YEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp HHHHST-TEE---ECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred HHhhCc-CcE---ECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 332221 111 1234789988764 45667777 77888777776 57889999988866554
No 9
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=56.01 E-value=1e+02 Score=26.89 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCeeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHhcC--Cc-c-ccccccccchhhhhhccccchhh
Q 019391 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEE 233 (341)
Q Consensus 158 S~YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l~G--~~-A-~~NFp~s~Y~~el~~l~~lskEE 233 (341)
.+|-||.++-+.-+-.+-|+..||-+--|. .++++|..|..+.+..+.. -. . ..+|....--.....-..+..++
T Consensus 41 ~~fpgli~Rl~~P~~t~lIF~SGKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 119 (182)
T 1ais_A 41 EEFPGIICHLDDPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDV 119 (182)
T ss_dssp TTCSSEEEECSSSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHH
T ss_pred CccccEEEEcCCCcEEEEEeCCCeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHH
Confidence 357888877777788899999999776664 5778888888776655533 21 1 12332211111000011222233
Q ss_pred hhhhhccccCCCCCCCccccCeeEee-cceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHHh
Q 019391 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (341)
Q Consensus 234 ~V~~LRRqS~g~~r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaikl 298 (341)
+...++ ... =...+|.|+.++- .-+=.+-| +..||-+-.|. .+++++..|.++....|
T Consensus 120 la~~~~-~~~---YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L 178 (182)
T 1ais_A 120 VALTLP-NCE---YEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLREL 178 (182)
T ss_dssp HHHHST-TEE---CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhhCC-CCE---ECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 332221 111 1234789988764 44667777 77888777776 56889999998876655
No 10
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=45.86 E-value=27 Score=31.55 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=30.5
Q ss_pred EeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHh
Q 019391 162 GVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKF 205 (341)
Q Consensus 162 GV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l 205 (341)
||+ .++.|.|.......||++.+|. |..+|-.+...+...+
T Consensus 15 ~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 465 4677899988888899999996 8887776665554443
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=44.41 E-value=31 Score=31.09 Aligned_cols=42 Identities=17% Similarity=0.014 Sum_probs=31.5
Q ss_pred cCeeEeecceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHHh
Q 019391 253 RGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (341)
Q Consensus 253 rGV~~~k~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaikl 298 (341)
.||...+.|.|+.+. ..+||++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~--~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRD--PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEEC--TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEe--ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 467766788999987 45778899996 8888877766655444
No 12
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=40.35 E-value=2e+02 Score=25.51 Aligned_cols=133 Identities=18% Similarity=0.223 Sum_probs=80.3
Q ss_pred CCeeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHhcC--Cc-c-ccccccccchhhhhhccccchhh
Q 019391 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEE 233 (341)
Q Consensus 158 S~YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l~G--~~-A-~~NFp~s~Y~~el~~l~~lskEE 233 (341)
.+|-||.++-+.-+-.+-|+..||-+--|.. +.++|..|..+.+..+.. -. . ..+|....--.....-..+..++
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (198)
T 1mp9_A 45 DQFPGLIFRLESPKITSLIFKSGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDK 123 (198)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHH
T ss_pred ccccceEEEcCCCceEEEEeCCCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHH
Confidence 3588898877888889999999998888875 556777777776655533 21 1 12332111111000011122233
Q ss_pred hhhhhccccCCCCCCCccccCeeEee-cceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHHh
Q 019391 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (341)
Q Consensus 234 ~V~~LRRqS~g~~r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaikl 298 (341)
+...++ ... =....|.|+.++- .-+=.+-| +..||-+-.|. .+++++..|.++....|
T Consensus 124 la~~~~-~~~---YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (198)
T 1mp9_A 124 AAFLLE-NNM---YEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKL 182 (198)
T ss_dssp HHHHSS-SEE---CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhhcC-CcE---ECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 332221 111 1234789988764 45677777 77888877776 56789999998876666
No 13
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=35.80 E-value=2.2e+02 Score=24.79 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=75.8
Q ss_pred CCeeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHhc--CCcc-ccccccccchhhhhhccccchhhh
Q 019391 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAEA-DINFSIEDYEDDLKQMSNLTKEEF 234 (341)
Q Consensus 158 S~YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l~--G~~A-~~NFp~s~Y~~el~~l~~lskEE~ 234 (341)
.+|-||.++-+.-+-.+-|+..||-+--|.- ++++|..|.++.+..+. |... ..||.....-.....-..+..+.+
T Consensus 37 e~fpgli~R~~~Pk~~~lIF~SGKiv~TGak-s~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~l 115 (180)
T 1ytb_A 37 KRFAAVIMRIREPKTTALIFASGKMVVTGAK-SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGL 115 (180)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred cccCCEEEEeCCCcEEEEEECCCeEEEEecC-CHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCccCHHHH
Confidence 3588998877888889999999998877764 66777777777655543 3211 133332111110000111222333
Q ss_pred hhhhccccCCCCCCCccccCeeEee-cceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHH
Q 019391 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (341)
Q Consensus 235 V~~LRRqS~g~~r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaik 297 (341)
......... =....|.|+.++- .-+=...| +..||-+-.|. .+++|+..|++.-.-.
T Consensus 116 a~~~~~~~~---YEPE~fPGliyR~~~pkv~~lI--F~SGkivitGa-k~~~~~~~a~~~i~p~ 173 (180)
T 1ytb_A 116 AFSHGTFSS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 173 (180)
T ss_dssp HHHTTTTEE---CCTTTCSSEEEECSSSCCEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred HHhcccceE---ECCccCCcEEEEeCCCcEEEEE--ecCCeEEEEec-CCHHHHHHHHHHHHHH
Confidence 322221111 1234788988764 33444555 77788777776 5678899998875543
No 14
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=27.38 E-value=3.6e+02 Score=24.63 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=76.6
Q ss_pred CCeeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHhc--CCcc-ccccccccchhhhhhccccchhhh
Q 019391 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAEA-DINFSIEDYEDDLKQMSNLTKEEF 234 (341)
Q Consensus 158 S~YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l~--G~~A-~~NFp~s~Y~~el~~l~~lskEE~ 234 (341)
.+|-||.++-+.-+-.+-|+..||-+--|.- ++++|..|..+.+..+. |... ..||.....-.....-..+..+.+
T Consensus 97 e~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGak-s~e~a~~A~~~i~~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~l 175 (240)
T 1rm1_A 97 KRFAAVIMRIREPKTTALIFASGKMVVTGAK-SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGL 175 (240)
T ss_dssp TTCSEEEEEEETTEEEEEEETTSEEEEEEES-SHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred cccceEEEEeCCCcEEEEEECCCeEEEEecC-CHHHHHHHHHHHHHHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHH
Confidence 3588999877788889999999998888764 56677777776655443 3221 133332111111010112222333
Q ss_pred hhhhccccCCCCCCCccccCeeEee-cceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHH
Q 019391 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (341)
Q Consensus 235 V~~LRRqS~g~~r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaik 297 (341)
.......... ....|.|+.++- .-+=...| +..||-+-+|. .+++|+..|++.-.-.
T Consensus 176 a~~~~~~~~Y---EPE~fPGLiyR~~~pkvvllI--F~SGKIviTGa-K~~~~~~~Ai~~i~p~ 233 (240)
T 1rm1_A 176 AFSHGTFSSY---EPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 233 (240)
T ss_dssp HHHTTTTEEE---ETTTEEEEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred HHhchhccEE---CCccCCceEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 3222211111 124788888764 33555666 77788777776 5678888888875543
Done!