Query 019392
Match_columns 341
No_of_seqs 362 out of 2432
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:06:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.3E-37 1.2E-41 275.5 28.0 176 110-293 102-279 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-35 4.4E-40 271.1 24.5 169 114-290 2-172 (352)
3 TIGR01645 half-pint poly-U bin 100.0 4.9E-35 1.1E-39 275.7 22.0 177 113-292 105-287 (612)
4 TIGR01628 PABP-1234 polyadenyl 100.0 1.8E-34 3.8E-39 279.9 22.1 190 117-340 2-191 (562)
5 KOG0148 Apoptosis-promoting RN 100.0 2.8E-34 6.1E-39 236.1 18.3 172 113-293 60-242 (321)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.6E-33 1.2E-37 254.9 22.6 177 114-291 88-351 (352)
7 KOG0144 RNA-binding protein CU 100.0 6.6E-34 1.4E-38 247.8 14.9 178 110-293 29-210 (510)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-32 2.5E-37 259.5 23.2 187 113-340 56-246 (578)
9 KOG0117 Heterogeneous nuclear 100.0 1.4E-32 2.9E-37 240.7 19.3 189 113-341 81-273 (506)
10 TIGR01628 PABP-1234 polyadenyl 100.0 3.7E-32 8.1E-37 263.6 21.4 208 114-340 87-298 (562)
11 KOG0145 RNA-binding protein EL 100.0 2.4E-31 5.1E-36 217.7 17.5 172 111-290 37-210 (360)
12 TIGR01622 SF-CC1 splicing fact 100.0 6.2E-31 1.3E-35 249.4 21.5 173 112-288 86-265 (457)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.1E-30 1.3E-34 242.4 23.9 164 114-290 1-175 (481)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-29 2.8E-34 240.3 25.2 167 114-290 95-352 (481)
15 TIGR01648 hnRNP-R-Q heterogene 100.0 4E-30 8.6E-35 242.4 21.1 214 113-340 136-354 (578)
16 KOG0148 Apoptosis-promoting RN 100.0 6.8E-30 1.5E-34 210.3 14.9 175 112-340 3-177 (321)
17 KOG0127 Nucleolar protein fibr 100.0 3E-29 6.4E-34 224.6 20.0 173 115-291 5-198 (678)
18 KOG0131 Splicing factor 3b, su 100.0 6.6E-30 1.4E-34 198.8 12.3 175 112-293 6-181 (203)
19 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.2E-28 4.7E-33 235.2 23.4 172 110-291 170-377 (509)
20 KOG0145 RNA-binding protein EL 100.0 5.4E-28 1.2E-32 198.0 16.1 175 114-289 126-358 (360)
21 KOG0117 Heterogeneous nuclear 100.0 6.7E-28 1.4E-32 211.4 15.6 174 113-295 162-337 (506)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.7E-26 3.7E-31 222.1 20.9 173 113-288 293-501 (509)
23 KOG0124 Polypyrimidine tract-b 99.9 1E-27 2.3E-32 205.1 10.8 174 113-289 111-290 (544)
24 KOG0123 Polyadenylate-binding 99.9 7E-27 1.5E-31 211.1 16.6 179 116-340 2-180 (369)
25 KOG0146 RNA-binding protein ET 99.9 3E-27 6.5E-32 194.4 12.5 181 111-293 15-369 (371)
26 KOG0127 Nucleolar protein fibr 99.9 2.8E-26 6.1E-31 205.6 16.7 174 115-292 117-381 (678)
27 KOG0109 RNA-binding protein LA 99.9 3.4E-27 7.4E-32 196.3 10.1 150 117-292 4-153 (346)
28 TIGR01622 SF-CC1 splicing fact 99.9 3.4E-24 7.4E-29 203.4 19.4 167 115-288 186-447 (457)
29 KOG0144 RNA-binding protein CU 99.9 1.9E-24 4E-29 189.0 12.2 178 113-292 122-507 (510)
30 KOG4205 RNA-binding protein mu 99.9 1.8E-24 3.9E-29 188.7 11.8 175 114-293 5-180 (311)
31 KOG0123 Polyadenylate-binding 99.9 6.5E-24 1.4E-28 191.9 14.7 203 118-341 79-284 (369)
32 KOG0110 RNA-binding protein (R 99.9 1.3E-23 2.9E-28 194.3 11.8 174 117-291 517-695 (725)
33 KOG0147 Transcriptional coacti 99.9 1.1E-23 2.4E-28 189.9 8.9 179 110-292 174-361 (549)
34 TIGR01659 sex-lethal sex-letha 99.9 2E-21 4.3E-26 174.9 12.4 104 204-340 103-206 (346)
35 TIGR01645 half-pint poly-U bin 99.9 4.5E-20 9.7E-25 174.8 18.9 78 114-193 203-280 (612)
36 PLN03134 glycine-rich RNA-bind 99.8 4.9E-20 1.1E-24 145.6 13.8 86 206-292 32-117 (144)
37 KOG0110 RNA-binding protein (R 99.8 7.5E-20 1.6E-24 169.7 15.2 198 111-340 381-626 (725)
38 KOG4206 Spliceosomal protein s 99.8 2.1E-18 4.6E-23 140.1 16.6 163 114-287 8-220 (221)
39 KOG4211 Splicing factor hnRNP- 99.8 5.3E-18 1.1E-22 151.5 15.3 167 113-288 8-181 (510)
40 KOG0105 Alternative splicing f 99.8 5.9E-18 1.3E-22 132.4 13.6 161 112-285 3-186 (241)
41 KOG1457 RNA binding protein (c 99.8 7.4E-18 1.6E-22 135.8 13.7 162 111-277 30-274 (284)
42 KOG0147 Transcriptional coacti 99.8 3.4E-18 7.5E-23 154.7 11.4 166 115-288 278-527 (549)
43 KOG4212 RNA-binding protein hn 99.7 8.2E-17 1.8E-21 141.5 17.3 170 112-286 41-291 (608)
44 KOG0122 Translation initiation 99.7 7.1E-18 1.5E-22 137.9 9.5 83 206-289 187-269 (270)
45 PLN03134 glycine-rich RNA-bind 99.7 2.5E-17 5.5E-22 130.1 11.7 84 112-197 31-114 (144)
46 KOG1548 Transcription elongati 99.7 3.1E-16 6.6E-21 134.4 17.2 173 112-292 131-355 (382)
47 KOG0131 Splicing factor 3b, su 99.7 1.1E-17 2.3E-22 130.9 6.5 103 206-340 7-109 (203)
48 KOG0106 Alternative splicing f 99.7 1E-17 2.2E-22 137.7 6.6 152 116-286 2-168 (216)
49 KOG0149 Predicted RNA-binding 99.7 1.7E-17 3.6E-22 135.3 6.8 83 205-289 9-91 (247)
50 PF00076 RRM_1: RNA recognitio 99.7 8.2E-17 1.8E-21 111.7 9.1 70 211-282 1-70 (70)
51 KOG0125 Ataxin 2-binding prote 99.7 6.9E-17 1.5E-21 137.3 9.0 87 203-292 91-177 (376)
52 KOG0121 Nuclear cap-binding pr 99.7 4.9E-17 1.1E-21 119.7 6.8 82 206-288 34-115 (153)
53 KOG1190 Polypyrimidine tract-b 99.7 1.9E-15 4.1E-20 132.1 17.6 216 114-341 149-428 (492)
54 KOG1190 Polypyrimidine tract-b 99.7 1.3E-15 2.8E-20 133.1 14.3 162 115-288 297-490 (492)
55 KOG0113 U1 small nuclear ribon 99.7 1.1E-15 2.5E-20 128.4 11.5 91 205-296 98-188 (335)
56 PF14259 RRM_6: RNA recognitio 99.7 8.2E-16 1.8E-20 106.7 9.0 70 211-282 1-70 (70)
57 KOG0122 Translation initiation 99.6 7.5E-16 1.6E-20 126.1 9.8 88 108-197 182-269 (270)
58 KOG0126 Predicted RNA-binding 99.6 9.4E-17 2E-21 125.4 2.8 86 206-292 33-118 (219)
59 KOG0107 Alternative splicing f 99.6 8.5E-16 1.8E-20 119.6 8.0 79 207-291 9-87 (195)
60 COG0724 RNA-binding proteins ( 99.6 4.4E-15 9.5E-20 131.5 13.7 153 115-270 115-286 (306)
61 KOG0124 Polypyrimidine tract-b 99.6 9E-15 2E-19 126.1 14.5 172 113-287 208-533 (544)
62 PLN03120 nucleic acid binding 99.6 1.9E-15 4.2E-20 127.6 10.2 78 208-290 4-81 (260)
63 KOG4207 Predicted splicing fac 99.6 1.2E-15 2.6E-20 121.7 7.9 86 205-291 10-95 (256)
64 KOG4212 RNA-binding protein hn 99.6 1.6E-14 3.4E-19 127.3 15.3 73 208-286 536-608 (608)
65 KOG0149 Predicted RNA-binding 99.6 2.1E-15 4.5E-20 123.1 9.1 83 111-196 8-90 (247)
66 KOG0109 RNA-binding protein LA 99.6 8E-16 1.7E-20 128.8 6.6 89 209-340 3-91 (346)
67 KOG0121 Nuclear cap-binding pr 99.6 1.6E-15 3.4E-20 111.8 7.0 82 112-195 33-114 (153)
68 KOG0120 Splicing factor U2AF, 99.6 4.2E-15 9.1E-20 136.5 11.3 178 110-288 284-491 (500)
69 KOG0105 Alternative splicing f 99.6 6.3E-15 1.4E-19 115.6 10.6 80 207-290 5-84 (241)
70 PF00076 RRM_1: RNA recognitio 99.6 4.6E-15 1E-19 102.8 7.2 66 118-184 1-66 (70)
71 KOG0111 Cyclophilin-type pepti 99.6 1.2E-15 2.6E-20 122.8 4.3 87 206-293 8-94 (298)
72 KOG0130 RNA-binding protein RB 99.6 5E-15 1.1E-19 110.1 7.2 88 205-293 69-156 (170)
73 KOG1456 Heterogeneous nuclear 99.6 4E-13 8.6E-18 116.4 19.9 172 110-290 282-492 (494)
74 KOG1456 Heterogeneous nuclear 99.6 1.4E-13 3.1E-18 119.1 16.4 169 110-290 26-200 (494)
75 KOG0108 mRNA cleavage and poly 99.6 1.2E-14 2.7E-19 132.8 9.9 84 209-293 19-102 (435)
76 KOG0114 Predicted RNA-binding 99.6 3.3E-14 7.1E-19 100.9 9.1 82 205-290 15-96 (124)
77 PLN03213 repressor of silencin 99.5 1.8E-14 4E-19 128.8 9.4 79 207-290 9-89 (759)
78 COG0724 RNA-binding proteins ( 99.5 1.5E-13 3.2E-18 121.7 15.0 123 208-340 115-238 (306)
79 KOG0125 Ataxin 2-binding prote 99.5 5E-14 1.1E-18 120.0 10.9 90 110-203 91-180 (376)
80 smart00362 RRM_2 RNA recogniti 99.5 5.6E-14 1.2E-18 97.3 9.4 72 210-284 1-72 (72)
81 PLN03121 nucleic acid binding 99.5 4.6E-14 9.9E-19 117.3 10.1 77 207-288 4-80 (243)
82 smart00360 RRM RNA recognition 99.5 5.8E-14 1.3E-18 96.9 8.8 71 213-284 1-71 (71)
83 KOG0129 Predicted RNA-binding 99.5 3.3E-13 7.1E-18 122.0 15.5 159 110-270 254-432 (520)
84 KOG4205 RNA-binding protein mu 99.5 2.6E-14 5.6E-19 125.2 7.6 107 207-341 5-111 (311)
85 PF14259 RRM_6: RNA recognitio 99.5 3.8E-14 8.2E-19 98.3 6.7 66 118-184 1-66 (70)
86 PLN03120 nucleic acid binding 99.5 8.8E-14 1.9E-18 117.6 9.3 75 115-195 4-78 (260)
87 KOG0113 U1 small nuclear ribon 99.5 1.7E-13 3.6E-18 115.5 8.9 89 103-191 89-177 (335)
88 KOG0107 Alternative splicing f 99.5 1.1E-13 2.4E-18 107.8 7.0 77 113-196 8-84 (195)
89 KOG0108 mRNA cleavage and poly 99.5 7.7E-14 1.7E-18 127.6 6.6 79 116-196 19-97 (435)
90 KOG1365 RNA-binding protein Fu 99.5 5E-13 1.1E-17 116.1 11.2 170 113-288 159-361 (508)
91 KOG4207 Predicted splicing fac 99.5 1.1E-13 2.4E-18 110.5 6.6 84 111-196 9-92 (256)
92 cd00590 RRM RRM (RNA recogniti 99.5 6.6E-13 1.4E-17 92.4 9.9 74 210-285 1-74 (74)
93 KOG0126 Predicted RNA-binding 99.5 5.3E-15 1.2E-19 115.7 -1.2 86 108-195 28-113 (219)
94 smart00361 RRM_1 RNA recogniti 99.4 4.5E-13 9.7E-18 92.6 8.0 62 222-284 2-70 (70)
95 KOG0226 RNA-binding proteins [ 99.4 6.1E-14 1.3E-18 115.6 4.0 171 116-290 97-271 (290)
96 KOG4206 Spliceosomal protein s 99.4 1.1E-12 2.4E-17 107.0 11.2 83 207-293 8-94 (221)
97 PLN03121 nucleic acid binding 99.4 6.2E-13 1.3E-17 110.7 9.3 75 114-194 4-78 (243)
98 PF13893 RRM_5: RNA recognitio 99.4 1.1E-12 2.3E-17 86.6 7.9 56 225-286 1-56 (56)
99 KOG0120 Splicing factor U2AF, 99.4 7.2E-13 1.6E-17 121.9 9.1 173 111-291 171-371 (500)
100 KOG0114 Predicted RNA-binding 99.4 1.7E-12 3.6E-17 92.3 8.8 82 109-195 12-93 (124)
101 PLN03213 repressor of silencin 99.4 1.2E-12 2.5E-17 117.4 8.8 77 113-195 8-86 (759)
102 KOG0130 RNA-binding protein RB 99.4 1.4E-12 3E-17 97.2 7.2 86 111-198 68-153 (170)
103 smart00362 RRM_2 RNA recogniti 99.4 2.8E-12 6.2E-17 88.6 8.4 65 117-183 1-65 (72)
104 KOG4210 Nuclear localization s 99.4 1.1E-12 2.5E-17 114.7 7.2 178 113-292 86-267 (285)
105 KOG4454 RNA binding protein (R 99.4 1.9E-13 4E-18 110.3 2.0 141 112-276 6-150 (267)
106 KOG0415 Predicted peptidyl pro 99.4 1.1E-12 2.3E-17 113.0 6.5 85 205-290 236-320 (479)
107 smart00360 RRM RNA recognition 99.4 4.2E-12 9.1E-17 87.4 8.2 64 120-183 1-64 (71)
108 KOG0111 Cyclophilin-type pepti 99.3 4.9E-13 1.1E-17 107.9 3.3 83 113-197 8-90 (298)
109 cd00590 RRM RRM (RNA recogniti 99.3 2.6E-11 5.7E-16 84.2 8.9 72 117-191 1-72 (74)
110 KOG4208 Nucleolar RNA-binding 99.2 3.4E-11 7.4E-16 96.8 8.2 84 205-289 46-130 (214)
111 KOG4211 Splicing factor hnRNP- 99.2 6.7E-10 1.5E-14 100.2 17.0 166 113-286 101-355 (510)
112 KOG0128 RNA-binding protein SA 99.2 8.2E-13 1.8E-17 125.7 -2.2 151 113-289 665-815 (881)
113 KOG0112 Large RNA-binding prot 99.2 1.4E-11 2.9E-16 118.0 4.9 165 110-291 367-533 (975)
114 KOG0132 RNA polymerase II C-te 99.2 2.9E-11 6.3E-16 114.0 7.0 108 114-229 420-527 (894)
115 KOG1365 RNA-binding protein Fu 99.2 8.4E-11 1.8E-15 102.5 9.3 174 111-289 56-243 (508)
116 smart00361 RRM_1 RNA recogniti 99.2 1.2E-10 2.7E-15 80.3 7.0 60 129-190 2-68 (70)
117 KOG0146 RNA-binding protein ET 99.1 1E-10 2.3E-15 97.2 6.6 82 110-191 280-361 (371)
118 KOG0153 Predicted RNA-binding 99.1 2.9E-10 6.4E-15 98.1 8.7 83 201-290 221-304 (377)
119 PF13893 RRM_5: RNA recognitio 99.1 1.9E-10 4.2E-15 75.7 5.6 56 132-194 1-56 (56)
120 KOG0132 RNA polymerase II C-te 99.1 2.6E-10 5.6E-15 107.7 7.6 81 206-293 419-499 (894)
121 KOG4208 Nucleolar RNA-binding 99.0 7E-10 1.5E-14 89.3 7.7 73 111-183 45-118 (214)
122 KOG0415 Predicted peptidyl pro 99.0 2.8E-10 6.1E-15 98.3 5.8 83 112-196 236-318 (479)
123 KOG1457 RNA binding protein (c 99.0 3.4E-09 7.3E-14 86.2 9.4 86 206-292 32-121 (284)
124 KOG4660 Protein Mei2, essentia 99.0 1.4E-09 3E-14 99.7 7.7 164 110-289 70-250 (549)
125 KOG0533 RRM motif-containing p 98.9 5.2E-09 1.1E-13 88.5 8.4 82 207-290 82-163 (243)
126 KOG4661 Hsp27-ERE-TATA-binding 98.9 4.7E-09 1E-13 96.1 8.0 83 206-289 403-485 (940)
127 KOG4307 RNA binding protein RB 98.9 7.6E-09 1.6E-13 96.8 9.0 184 100-289 296-514 (944)
128 KOG0116 RasGAP SH3 binding pro 98.9 1.6E-08 3.5E-13 92.4 10.3 80 209-290 289-368 (419)
129 KOG0153 Predicted RNA-binding 98.9 7.4E-09 1.6E-13 89.6 7.6 82 108-196 221-302 (377)
130 KOG0106 Alternative splicing f 98.9 5.5E-09 1.2E-13 86.4 6.6 74 209-291 2-75 (216)
131 KOG4307 RNA binding protein RB 98.8 3.5E-08 7.6E-13 92.5 12.2 75 210-285 869-943 (944)
132 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.8E-08 3.9E-13 92.3 9.4 87 110-198 400-486 (940)
133 PF04059 RRM_2: RNA recognitio 98.8 3.4E-08 7.4E-13 71.6 8.9 81 209-289 2-87 (97)
134 PF04059 RRM_2: RNA recognitio 98.8 5E-08 1.1E-12 70.7 8.8 80 116-195 2-85 (97)
135 KOG4209 Splicing factor RNPS1, 98.8 9.6E-09 2.1E-13 87.2 5.9 83 205-289 98-180 (231)
136 KOG4454 RNA binding protein (R 98.8 2.8E-09 6.1E-14 86.4 2.1 79 206-287 7-85 (267)
137 KOG1548 Transcription elongati 98.8 2.6E-08 5.7E-13 86.2 8.0 81 206-288 132-220 (382)
138 KOG0226 RNA-binding proteins [ 98.8 1.4E-08 2.9E-13 84.4 5.9 80 112-193 187-266 (290)
139 KOG4660 Protein Mei2, essentia 98.8 7.1E-09 1.5E-13 95.1 4.4 72 205-282 72-143 (549)
140 KOG0533 RRM motif-containing p 98.6 1.2E-07 2.7E-12 80.2 8.0 81 111-194 79-159 (243)
141 KOG2193 IGF-II mRNA-binding pr 98.6 3.7E-09 8E-14 93.5 -1.5 153 116-288 2-156 (584)
142 KOG0151 Predicted splicing reg 98.6 1.4E-07 3E-12 88.9 7.5 84 205-289 171-257 (877)
143 KOG4209 Splicing factor RNPS1, 98.5 1E-07 2.3E-12 80.9 5.3 83 110-195 96-178 (231)
144 KOG0151 Predicted splicing reg 98.5 3.2E-07 6.9E-12 86.5 7.5 83 111-195 170-255 (877)
145 KOG0116 RasGAP SH3 binding pro 98.4 5.1E-07 1.1E-11 82.7 7.4 67 110-176 283-349 (419)
146 KOG1995 Conserved Zn-finger pr 98.4 3.2E-07 6.9E-12 80.3 4.2 85 207-292 65-157 (351)
147 KOG0129 Predicted RNA-binding 98.4 4.2E-06 9.1E-11 76.6 11.0 124 203-340 254-383 (520)
148 KOG0128 RNA-binding protein SA 98.3 4.5E-08 9.7E-13 94.0 -2.0 160 114-277 570-735 (881)
149 KOG4676 Splicing factor, argin 98.3 2.2E-07 4.8E-12 81.7 0.9 167 116-289 8-226 (479)
150 PF11608 Limkain-b1: Limkain b 98.2 6.9E-06 1.5E-10 56.7 7.4 71 209-290 3-78 (90)
151 COG5175 MOT2 Transcriptional r 98.2 6.6E-06 1.4E-10 71.2 7.6 83 206-289 112-203 (480)
152 PF08777 RRM_3: RNA binding mo 98.2 4E-06 8.8E-11 62.3 5.5 70 209-285 2-76 (105)
153 PF11608 Limkain-b1: Limkain b 98.0 3.1E-05 6.8E-10 53.5 7.2 68 116-195 3-75 (90)
154 KOG0115 RNA-binding protein p5 98.0 1.3E-05 2.8E-10 67.1 6.0 102 168-285 5-110 (275)
155 KOG1855 Predicted RNA-binding 98.0 9.1E-06 2E-10 72.7 5.3 79 205-284 228-319 (484)
156 KOG1995 Conserved Zn-finger pr 97.9 2.6E-05 5.6E-10 68.5 7.0 84 112-197 63-154 (351)
157 KOG2314 Translation initiation 97.9 2.3E-05 5E-10 72.4 6.4 78 207-286 57-141 (698)
158 KOG3152 TBP-binding protein, a 97.8 9.9E-06 2.1E-10 67.7 2.8 73 207-280 73-157 (278)
159 PF08777 RRM_3: RNA binding mo 97.8 5.1E-05 1.1E-09 56.4 5.5 59 116-180 2-60 (105)
160 KOG4849 mRNA cleavage factor I 97.8 2.5E-05 5.5E-10 68.0 4.0 70 115-184 80-151 (498)
161 KOG1996 mRNA splicing factor [ 97.8 7.5E-05 1.6E-09 63.7 6.7 66 222-288 300-366 (378)
162 KOG4849 mRNA cleavage factor I 97.7 2.6E-05 5.7E-10 67.9 3.6 75 208-283 80-156 (498)
163 PF14605 Nup35_RRM_2: Nup53/35 97.7 9E-05 2E-09 47.6 5.1 52 116-174 2-53 (53)
164 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.4E-05 1.8E-09 47.7 4.7 52 209-268 2-53 (53)
165 KOG1855 Predicted RNA-binding 97.6 6.9E-05 1.5E-09 67.2 4.9 80 112-191 228-320 (484)
166 KOG2202 U2 snRNP splicing fact 97.6 2.5E-05 5.4E-10 65.6 1.7 64 223-287 83-146 (260)
167 COG5175 MOT2 Transcriptional r 97.5 0.0001 2.3E-09 64.0 4.3 111 116-228 115-240 (480)
168 KOG4210 Nuclear localization s 97.5 8.7E-05 1.9E-09 65.4 3.7 82 113-197 182-264 (285)
169 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00061 1.3E-08 49.8 7.1 77 208-287 6-90 (100)
170 KOG3152 TBP-binding protein, a 97.3 0.00036 7.8E-09 58.6 4.7 73 114-186 73-157 (278)
171 KOG2314 Translation initiation 97.3 0.00038 8.3E-09 64.6 5.3 73 113-186 56-134 (698)
172 KOG2193 IGF-II mRNA-binding pr 97.2 0.00022 4.7E-09 63.9 2.6 77 209-292 2-79 (584)
173 KOG0112 Large RNA-binding prot 97.2 0.00014 3.1E-09 70.9 1.5 83 205-289 369-451 (975)
174 PF10309 DUF2414: Protein of u 97.1 0.0029 6.2E-08 41.7 6.4 54 209-271 6-62 (62)
175 PF08952 DUF1866: Domain of un 97.1 0.0019 4.2E-08 50.1 6.4 57 224-290 52-108 (146)
176 KOG2253 U1 snRNP complex, subu 97.1 8E-05 1.7E-09 70.4 -1.5 109 113-230 38-157 (668)
177 KOG2591 c-Mpl binding protein, 97.0 0.0021 4.6E-08 59.7 7.1 72 207-285 174-248 (684)
178 KOG2416 Acinus (induces apopto 96.9 0.00074 1.6E-08 63.2 3.5 80 205-290 441-523 (718)
179 PF08675 RNA_bind: RNA binding 96.9 0.0048 1E-07 42.9 6.3 55 209-273 10-64 (87)
180 PF10309 DUF2414: Protein of u 96.9 0.0087 1.9E-07 39.4 7.1 53 116-177 6-62 (62)
181 KOG2416 Acinus (induces apopto 96.7 0.0014 3E-08 61.5 3.5 79 111-195 440-520 (718)
182 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0049 1.1E-07 45.1 5.4 69 113-183 4-79 (100)
183 KOG2068 MOT2 transcription fac 96.6 0.0008 1.7E-08 59.0 1.4 82 208-291 77-165 (327)
184 KOG2135 Proteins containing th 96.6 0.0023 5E-08 58.4 3.9 73 210-290 374-447 (526)
185 KOG2202 U2 snRNP splicing fact 96.4 0.0017 3.8E-08 54.7 2.1 61 130-193 83-144 (260)
186 PF15023 DUF4523: Protein of u 96.4 0.016 3.4E-07 44.6 6.9 75 205-288 83-161 (166)
187 KOG0115 RNA-binding protein p5 96.4 0.017 3.7E-07 48.9 7.6 62 116-178 32-93 (275)
188 PF08675 RNA_bind: RNA binding 96.4 0.014 3.1E-07 40.6 5.8 55 116-179 10-64 (87)
189 PF07576 BRAP2: BRCA1-associat 96.3 0.055 1.2E-06 40.4 9.1 68 208-278 13-81 (110)
190 PF10567 Nab6_mRNP_bdg: RNA-re 96.2 0.33 7.2E-06 42.2 14.5 176 111-287 11-230 (309)
191 KOG4676 Splicing factor, argin 96.0 0.0084 1.8E-07 53.6 4.3 77 209-287 8-87 (479)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.0097 2.1E-07 48.7 4.4 84 207-291 6-100 (176)
193 KOG1996 mRNA splicing factor [ 95.9 0.024 5.3E-07 48.8 6.3 63 129-193 300-363 (378)
194 PF07576 BRAP2: BRCA1-associat 95.8 0.12 2.7E-06 38.5 9.2 69 113-183 11-80 (110)
195 PF03880 DbpA: DbpA RNA bindin 95.7 0.06 1.3E-06 37.2 6.8 66 210-286 2-74 (74)
196 KOG4574 RNA-binding protein (c 95.6 0.0078 1.7E-07 58.9 2.5 75 210-291 300-376 (1007)
197 PF15023 DUF4523: Protein of u 95.3 0.093 2E-06 40.5 7.0 75 111-195 82-160 (166)
198 PF04847 Calcipressin: Calcipr 95.3 0.047 1E-06 44.9 5.8 63 221-290 8-72 (184)
199 KOG2591 c-Mpl binding protein, 95.3 0.032 6.9E-07 52.2 5.3 61 111-178 171-233 (684)
200 KOG0804 Cytoplasmic Zn-finger 95.2 0.11 2.4E-06 47.6 8.3 68 208-277 74-141 (493)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.017 3.6E-07 47.3 2.5 71 113-183 5-81 (176)
202 KOG2318 Uncharacterized conser 95.0 0.21 4.4E-06 47.3 9.7 129 111-286 170-305 (650)
203 PF07292 NID: Nmi/IFP 35 domai 94.8 0.048 1E-06 38.8 4.0 69 160-229 1-73 (88)
204 KOG4574 RNA-binding protein (c 94.3 0.029 6.2E-07 55.1 2.5 75 117-197 300-374 (1007)
205 PF08952 DUF1866: Domain of un 94.2 0.064 1.4E-06 41.8 3.8 50 131-191 52-101 (146)
206 KOG2891 Surface glycoprotein [ 94.0 0.055 1.2E-06 46.3 3.4 140 142-289 67-268 (445)
207 KOG4285 Mitotic phosphoprotein 93.5 0.24 5.1E-06 43.1 6.2 73 208-289 197-270 (350)
208 KOG2253 U1 snRNP complex, subu 92.6 0.064 1.4E-06 51.4 1.8 72 205-286 37-108 (668)
209 KOG0804 Cytoplasmic Zn-finger 92.5 0.64 1.4E-05 42.8 7.8 67 115-183 74-141 (493)
210 KOG2068 MOT2 transcription fac 92.0 0.1 2.2E-06 46.1 2.2 77 116-194 78-160 (327)
211 PF11767 SET_assoc: Histone ly 91.8 0.99 2.1E-05 30.3 6.2 55 219-283 11-65 (66)
212 KOG2135 Proteins containing th 91.0 0.12 2.5E-06 47.7 1.5 79 111-198 368-447 (526)
213 KOG4285 Mitotic phosphoprotein 90.7 0.39 8.4E-06 41.8 4.3 61 116-184 198-258 (350)
214 PF11767 SET_assoc: Histone ly 90.3 1.3 2.8E-05 29.7 5.7 48 126-182 11-58 (66)
215 PF04847 Calcipressin: Calcipr 89.9 0.5 1.1E-05 38.9 4.2 60 128-195 8-69 (184)
216 KOG1924 RhoA GTPase effector D 86.6 1.2 2.5E-05 44.2 4.9 8 264-271 804-811 (1102)
217 COG5638 Uncharacterized conser 84.9 8 0.00017 35.4 9.0 139 112-286 143-295 (622)
218 PF10567 Nab6_mRNP_bdg: RNA-re 84.4 3.1 6.7E-05 36.4 6.1 84 206-290 13-109 (309)
219 PF07292 NID: Nmi/IFP 35 domai 82.6 3.1 6.6E-05 29.7 4.5 61 254-339 1-64 (88)
220 KOG4274 Positive cofactor 2 (P 77.9 5.4 0.00012 38.1 5.6 15 258-272 543-557 (742)
221 KOG4410 5-formyltetrahydrofola 77.8 6 0.00013 34.4 5.5 53 112-169 327-379 (396)
222 KOG3424 40S ribosomal protein 77.2 4.7 0.0001 30.1 4.1 47 219-266 34-84 (132)
223 PRK14548 50S ribosomal protein 75.8 8.9 0.00019 27.1 5.1 58 211-271 23-81 (84)
224 PF03880 DbpA: DbpA RNA bindin 75.4 12 0.00026 25.6 5.6 57 125-192 11-72 (74)
225 KOG2295 C2H2 Zn-finger protein 75.0 0.49 1.1E-05 44.7 -1.8 75 206-281 229-303 (648)
226 KOG4410 5-formyltetrahydrofola 74.3 18 0.0004 31.5 7.5 47 208-261 330-377 (396)
227 KOG4483 Uncharacterized conser 73.0 8.9 0.00019 35.0 5.5 55 114-175 390-445 (528)
228 TIGR03636 L23_arch archaeal ri 72.2 13 0.00029 25.7 5.1 58 210-270 15-73 (77)
229 PF07530 PRE_C2HC: Associated 69.7 9.3 0.0002 25.8 3.9 64 223-290 2-66 (68)
230 PRK01178 rps24e 30S ribosomal 69.5 12 0.00026 27.4 4.6 48 218-266 29-80 (99)
231 TIGR02542 B_forsyth_147 Bacter 69.0 5.9 0.00013 29.5 2.9 47 216-262 82-130 (145)
232 PF14111 DUF4283: Domain of un 68.7 8.7 0.00019 30.2 4.3 109 126-243 28-139 (153)
233 KOG2295 C2H2 Zn-finger protein 68.1 1.6 3.5E-05 41.4 -0.1 70 113-182 229-298 (648)
234 KOG4019 Calcineurin-mediated s 63.3 11 0.00024 30.6 3.7 77 210-293 12-94 (193)
235 PF03468 XS: XS domain; Inter 61.8 7.3 0.00016 29.4 2.4 45 220-268 29-74 (116)
236 KOG3702 Nuclear polyadenylated 61.4 19 0.0004 35.3 5.5 71 210-282 513-583 (681)
237 COG0445 GidA Flavin-dependent 58.6 62 0.0014 31.5 8.4 86 158-244 237-336 (621)
238 PTZ00071 40S ribosomal protein 58.3 22 0.00047 27.4 4.4 46 219-265 35-85 (132)
239 KOG4483 Uncharacterized conser 57.5 57 0.0012 30.1 7.5 56 207-270 390-446 (528)
240 PF03468 XS: XS domain; Inter 57.4 14 0.00031 27.8 3.4 55 117-174 10-74 (116)
241 PF15513 DUF4651: Domain of un 54.0 32 0.0007 22.6 4.0 19 130-148 9-27 (62)
242 PRK14548 50S ribosomal protein 52.6 59 0.0013 22.9 5.6 57 118-177 23-81 (84)
243 PRK11901 hypothetical protein; 50.3 32 0.00068 30.9 4.8 61 207-273 244-306 (327)
244 COG5594 Uncharacterized integr 49.7 3.7 8.1E-05 41.1 -1.1 29 112-140 205-234 (827)
245 COG3254 Uncharacterized conser 49.1 58 0.0013 23.9 5.1 42 223-268 27-68 (105)
246 COG5193 LHP1 La protein, small 49.0 7.7 0.00017 35.5 0.8 62 114-175 173-244 (438)
247 COG2004 RPS24A Ribosomal prote 48.4 50 0.0011 24.4 4.8 48 218-266 30-81 (107)
248 PF01282 Ribosomal_S24e: Ribos 47.1 55 0.0012 23.1 4.8 48 218-266 11-62 (84)
249 KOG1295 Nonsense-mediated deca 47.0 29 0.00062 31.8 4.0 69 207-276 6-77 (376)
250 KOG4274 Positive cofactor 2 (P 46.2 48 0.001 32.0 5.5 11 118-128 345-355 (742)
251 smart00596 PRE_C2HC PRE_C2HC d 45.8 36 0.00078 22.9 3.4 64 223-290 2-66 (69)
252 PTZ00191 60S ribosomal protein 45.2 61 0.0013 25.5 5.1 57 210-269 83-140 (145)
253 PRK11901 hypothetical protein; 44.9 96 0.0021 27.9 6.9 65 112-181 242-308 (327)
254 PF02714 DUF221: Domain of unk 44.3 28 0.0006 31.4 3.7 36 254-291 1-36 (325)
255 COG5353 Uncharacterized protei 43.1 1.2E+02 0.0025 24.0 6.2 55 209-263 88-154 (161)
256 PF15513 DUF4651: Domain of un 41.4 61 0.0013 21.4 3.9 19 223-242 9-27 (62)
257 PF12687 DUF3801: Protein of u 41.1 66 0.0014 27.0 5.2 56 126-183 38-96 (204)
258 KOG2891 Surface glycoprotein [ 40.3 38 0.00081 29.5 3.6 70 113-182 147-247 (445)
259 PF11823 DUF3343: Protein of u 40.3 33 0.00072 23.2 2.8 24 253-276 3-26 (73)
260 PF02714 DUF221: Domain of unk 39.5 61 0.0013 29.2 5.2 56 160-230 1-56 (325)
261 KOG1295 Nonsense-mediated deca 39.3 31 0.00068 31.5 3.1 70 113-182 5-77 (376)
262 COG5193 LHP1 La protein, small 38.5 17 0.00037 33.4 1.3 62 207-269 173-244 (438)
263 PF08734 GYD: GYD domain; Int 37.7 1.4E+02 0.003 21.3 5.8 44 130-177 23-67 (91)
264 KOG4213 RNA-binding protein La 37.7 47 0.001 27.0 3.5 57 115-176 111-169 (205)
265 PF14893 PNMA: PNMA 37.6 35 0.00075 31.0 3.1 81 206-291 16-99 (331)
266 PF09869 DUF2096: Uncharacteri 36.8 1.4E+02 0.0029 24.1 5.9 53 208-272 112-164 (169)
267 KOG2199 Signal transducing ada 36.1 53 0.0011 30.3 4.0 10 37-46 394-403 (462)
268 KOG4019 Calcineurin-mediated s 36.1 21 0.00046 29.0 1.4 75 114-195 9-88 (193)
269 KOG2318 Uncharacterized conser 35.8 60 0.0013 31.5 4.4 38 158-195 269-306 (650)
270 KOG4008 rRNA processing protei 34.4 40 0.00087 28.7 2.8 35 111-145 36-70 (261)
271 KOG4008 rRNA processing protei 34.4 33 0.00072 29.2 2.3 33 206-239 38-70 (261)
272 PF08544 GHMP_kinases_C: GHMP 33.7 1.5E+02 0.0033 20.1 5.8 43 130-177 37-79 (85)
273 PRK11634 ATP-dependent RNA hel 33.3 1.9E+02 0.0042 28.9 7.9 69 210-289 488-563 (629)
274 cd06404 PB1_aPKC PB1 domain is 32.6 1.8E+02 0.0039 20.5 6.7 58 210-272 10-69 (83)
275 PF13689 DUF4154: Domain of un 31.8 1.8E+02 0.004 22.6 6.2 60 222-287 2-61 (145)
276 PF03439 Spt5-NGN: Early trans 31.4 81 0.0018 22.1 3.7 26 250-275 43-68 (84)
277 PF04026 SpoVG: SpoVG; InterP 28.8 1E+02 0.0022 21.8 3.7 44 236-286 3-48 (84)
278 PRK10905 cell division protein 28.2 1.1E+02 0.0025 27.4 4.7 63 114-181 246-310 (328)
279 KOG1151 Tousled-like protein k 27.7 52 0.0011 31.2 2.6 13 329-341 651-663 (775)
280 PF00403 HMA: Heavy-metal-asso 27.5 1.7E+02 0.0036 18.6 5.8 54 117-176 1-58 (62)
281 COG3254 Uncharacterized conser 27.0 2.6E+02 0.0057 20.6 5.5 41 131-174 28-68 (105)
282 PF04026 SpoVG: SpoVG; InterP 26.0 1.1E+02 0.0025 21.5 3.6 26 141-166 2-27 (84)
283 PF14893 PNMA: PNMA 25.8 52 0.0011 29.9 2.3 76 112-194 15-94 (331)
284 cd00874 RNA_Cyclase_Class_II R 25.6 5.1E+02 0.011 23.5 9.5 112 122-259 119-238 (326)
285 PRK10629 EnvZ/OmpR regulon mod 25.3 3.2E+02 0.0068 21.0 7.7 70 209-287 36-109 (127)
286 KOG2187 tRNA uracil-5-methyltr 25.2 68 0.0015 30.9 2.9 42 251-292 63-104 (534)
287 PF11491 DUF3213: Protein of u 24.8 1.9E+02 0.0042 20.3 4.3 66 211-284 3-72 (88)
288 CHL00030 rpl23 ribosomal prote 24.3 2.3E+02 0.0049 20.4 4.9 35 210-244 20-55 (93)
289 KOG0862 Synaptobrevin/VAMP-lik 24.3 66 0.0014 27.1 2.4 31 223-261 89-119 (216)
290 PRK10263 DNA translocase FtsK; 24.2 1.6E+02 0.0035 32.1 5.7 14 259-272 1070-1083(1355)
291 PRK13259 regulatory protein Sp 24.0 1.2E+02 0.0027 21.8 3.5 26 141-166 2-27 (94)
292 PRK13259 regulatory protein Sp 24.0 1.3E+02 0.0028 21.7 3.6 25 236-260 3-27 (94)
293 cd00875 RNA_Cyclase_Class_I RN 23.7 5.7E+02 0.012 23.4 8.7 115 121-259 118-244 (341)
294 PRK10905 cell division protein 23.4 1.4E+02 0.003 26.9 4.3 59 208-272 247-307 (328)
295 PF09770 PAT1: Topoisomerase I 23.2 27 0.00059 36.0 0.0 7 159-165 388-394 (808)
296 COG4010 Uncharacterized protei 22.4 2.6E+02 0.0057 21.9 5.1 47 215-272 118-164 (170)
297 PF11411 DNA_ligase_IV: DNA li 22.1 69 0.0015 18.5 1.5 16 125-140 19-34 (36)
298 PRK07400 30S ribosomal protein 21.9 1.7E+02 0.0037 26.4 4.8 36 126-166 12-53 (318)
299 COG5507 Uncharacterized conser 21.5 96 0.0021 22.4 2.4 20 252-271 67-86 (117)
300 KOG1985 Vesicle coat complex C 21.2 3.1E+02 0.0067 28.2 6.6 12 251-262 295-306 (887)
301 COG0030 KsgA Dimethyladenosine 20.8 1.4E+02 0.0031 26.1 3.9 35 115-149 95-129 (259)
302 PF13820 Nucleic_acid_bd: Puta 20.7 2.4E+02 0.0052 22.4 4.8 59 117-179 6-67 (149)
303 PF15407 Spo7_2_N: Sporulation 20.6 53 0.0012 22.1 1.0 16 323-338 23-38 (67)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.3e-37 Score=275.47 Aligned_cols=176 Identities=26% Similarity=0.469 Sum_probs=159.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......++|||+|||+++|+++|+++|+.||+|++|+|++|+.+++++|||||+|.++++|++||+.|++..+ .++.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i 179 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRL 179 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCcee
Confidence 4566788999999999999999999999999999999999999999999999999999999999999999999 67788
Q ss_pred ccccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 019392 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (341)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~ 269 (341)
++.|+.... .....++|||+|||+++|+++|+++|+ +||+|++|+|++|+.++++||||||+|++.++|++||+
T Consensus 180 ~V~~a~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F~-~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 180 KVSYARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred eeecccccc-----cccccceeEEeCCCCcccHHHHHHHHH-hcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 888875432 122456899999999999999999996 99999999999999999999999999999999999999
Q ss_pred HhCCeeecC--ccEEEEecCCCCCCC
Q 019392 270 EMNGVYCSS--RPMRIDVATPKKASG 293 (341)
Q Consensus 270 ~l~~~~i~g--~~i~v~~a~~k~~~~ 293 (341)
.||+..+.+ +.|+|.+++.+...+
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HhCCCccCCCceeEEEEECCcccccc
Confidence 999998875 689999998775544
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2e-35 Score=271.09 Aligned_cols=169 Identities=27% Similarity=0.507 Sum_probs=153.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
...+|||+|||.++|+++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|+|..+ .++.+++.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEe
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 677788888
Q ss_pred ccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 019392 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~ 273 (341)
+..... ....++|||+|||.++++++|+++|+ .||.|..++++.+..++.++|||||+|++.++|.+||+.|||
T Consensus 80 a~~~~~-----~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 80 ARPSSD-----SIKGANLYVSGLPKTMTQHELESIFS-PFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eccccc-----ccccceEEECCccccCCHHHHHHHHh-ccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 754321 23456899999999999999999996 999999999999988899999999999999999999999999
Q ss_pred eeecC--ccEEEEecCCCC
Q 019392 274 VYCSS--RPMRIDVATPKK 290 (341)
Q Consensus 274 ~~i~g--~~i~v~~a~~k~ 290 (341)
..+.| +.|.|.|+....
T Consensus 154 ~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CccCCCceeEEEEECCCCC
Confidence 99877 578888886554
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.9e-35 Score=275.75 Aligned_cols=177 Identities=18% Similarity=0.364 Sum_probs=156.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+||++++++++|+++|..||+|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|||..+ .++.+++.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i--~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE--ecceeeec
Confidence 4668999999999999999999999999999999999999999999999999999999999999999999 55666665
Q ss_pred cccccCCCC------ccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHH
Q 019392 193 WATFSGSDR------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 193 ~~~~~~~~~------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~ 266 (341)
+........ .......++|||+||++++++++|+++|+ .||.|.+|+|.+|+.++++||||||+|++.++|.+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs-~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE-AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 543221111 11223457999999999999999999996 99999999999999999999999999999999999
Q ss_pred HHHHhCCeeecCccEEEEecCCCCCC
Q 019392 267 AMTEMNGVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 267 Al~~l~~~~i~g~~i~v~~a~~k~~~ 292 (341)
||+.||++.|+|+.|+|.++.++...
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999999999999999999876544
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.8e-34 Score=279.88 Aligned_cols=190 Identities=29% Similarity=0.496 Sum_probs=167.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccccc
Q 019392 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (341)
Q Consensus 117 ~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~ 196 (341)
+|||+|||.++||++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++.+++..+ .++.+++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i--~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL--GGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeeEEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999999988 678899988764
Q ss_pred cCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee
Q 019392 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (341)
Q Consensus 197 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i 276 (341)
....+ .....+|||+|||.++++++|+++|+ .||.|.+|+|.++ .+|+++|||||+|++.++|.+|++.|||..+
T Consensus 80 ~~~~~---~~~~~~vfV~nLp~~~~~~~L~~~F~-~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 80 DPSLR---RSGVGNIFVKNLDKSVDNKALFDTFS-KFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc---ccCCCceEEcCCCccCCHHHHHHHHH-hcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 43322 22356899999999999999999997 9999999999998 5689999999999999999999999999999
Q ss_pred cCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 277 SSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 277 ~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
+++.|.|....++.... .......++|||+||+.++|
T Consensus 155 ~~~~i~v~~~~~~~~~~---------------------------~~~~~~~~~l~V~nl~~~~t 191 (562)
T TIGR01628 155 NDKEVYVGRFIKKHERE---------------------------AAPLKKFTNLYVKNLDPSVN 191 (562)
T ss_pred cCceEEEeccccccccc---------------------------cccccCCCeEEEeCCCCcCC
Confidence 99999998766554331 01223457899999999987
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-34 Score=236.14 Aligned_cols=172 Identities=30% Similarity=0.556 Sum_probs=157.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...-.|||+.|...++.++|++.|.+||+|.+++|++|..++++|||+||.|.+.++|++||..|||..| .+|.||.+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTN 137 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTN 137 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeecc
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred cccccCCCCc-----------cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCH
Q 019392 193 WATFSGSDRR-----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (341)
Q Consensus 193 ~~~~~~~~~~-----------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~ 261 (341)
|+..+..... ......++|||+||+..++|++|++.|+ .||.|.+|||+++ +||+||.|++.
T Consensus 138 WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs-~fG~I~EVRvFk~------qGYaFVrF~tk 210 (321)
T KOG0148|consen 138 WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS-PFGPIQEVRVFKD------QGYAFVRFETK 210 (321)
T ss_pred ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc-cCCcceEEEEecc------cceEEEEecch
Confidence 9987763332 2345678999999999999999999998 9999999999987 47999999999
Q ss_pred HHHHHHHHHhCCeeecCccEEEEecCCCCCCC
Q 019392 262 NERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (341)
Q Consensus 262 ~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~~ 293 (341)
|+|.+||..+|+.+|+|..++|.|.+......
T Consensus 211 EaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 211 EAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred hhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 99999999999999999999999998876554
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.6e-33 Score=254.90 Aligned_cols=177 Identities=26% Similarity=0.494 Sum_probs=156.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
..++|||+|||..+++++|+.+|+.||.|..++++.+..++.++|||||+|.+.++|+.|++.|+|..+.+....+++.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998889999999999999999999999999999987777788777
Q ss_pred ccccCCCCc-----------------------------------------------------------------------
Q 019392 194 ATFSGSDRR----------------------------------------------------------------------- 202 (341)
Q Consensus 194 ~~~~~~~~~----------------------------------------------------------------------- 202 (341)
+........
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 643220000
Q ss_pred ----------------cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHH
Q 019392 203 ----------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 203 ----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~ 266 (341)
.......+|||+|||+++++++|+++|+ .||.|.+|+|++|+.++.+||||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~-~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFG-PFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011223699999999999999999997 99999999999999899999999999999999999
Q ss_pred HHHHhCCeeecCccEEEEecCCCCC
Q 019392 267 AMTEMNGVYCSSRPMRIDVATPKKA 291 (341)
Q Consensus 267 Al~~l~~~~i~g~~i~v~~a~~k~~ 291 (341)
||..|||..|+||.|+|.|+..|..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999988754
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.6e-34 Score=247.77 Aligned_cols=178 Identities=23% Similarity=0.485 Sum_probs=160.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCC-CCCCCCCC
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS-LMPNTDQP 188 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~-~~~~~~~~ 188 (341)
..+.+.-+||||-||..++|.||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|+.. .|+|...+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34466778999999999999999999999999999999999999999999999999999999999998774 58889999
Q ss_pred cccccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 019392 189 FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (341)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al 268 (341)
+.+.+++...+. ...+++|||+.|+..+||++|+++|+ +||.|++|+|++| ..+.+||||||.|.+.+.|..||
T Consensus 109 vqvk~Ad~E~er----~~~e~KLFvg~lsK~~te~evr~iFs-~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 109 VQVKYADGERER----IVEERKLFVGMLSKQCTENEVREIFS-RFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred eeecccchhhhc----cccchhhhhhhccccccHHHHHHHHH-hhCccchhhheec-ccccccceeEEEEehHHHHHHHH
Confidence 999998755332 24577999999999999999999998 9999999999999 56999999999999999999999
Q ss_pred HHhCC-eeecC--ccEEEEecCCCCCCC
Q 019392 269 TEMNG-VYCSS--RPMRIDVATPKKASG 293 (341)
Q Consensus 269 ~~l~~-~~i~g--~~i~v~~a~~k~~~~ 293 (341)
+.||| ..+.| .+|.|+|+++++++.
T Consensus 183 ka~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HhhccceeeccCCCceEEEecccCCCch
Confidence 99998 44665 589999999998764
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.2e-32 Score=259.47 Aligned_cols=187 Identities=17% Similarity=0.318 Sum_probs=154.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||++++|++|+++|+.||.|.+|+|++| .+|+++|||||+|.+.++|++||+.|++..+.. ++.+.+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~-Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP-GRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecC-Ccccccc
Confidence 45689999999999999999999999999999999999 689999999999999999999999999988742 3445554
Q ss_pred cccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCC-eeEEEEE-ecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~-v~~v~i~-~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
++. ..++|||+|||.++++++|+++|+ .++. +.++.+. .+..+++++|||||+|+++++|.+|++.
T Consensus 134 ~S~-----------~~~rLFVgNLP~~~TeeeL~eeFs-kv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 134 ISV-----------DNCRLFVGGIPKNKKREEILEEFS-KVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred ccc-----------cCceeEeecCCcchhhHHHHHHhh-cccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHH
Confidence 432 357899999999999999999997 7753 4444433 3334578899999999999999999998
Q ss_pred hCC--eeecCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 271 MNG--VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 271 l~~--~~i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
|+. ..+.|+.|.|+|+.++..... +.....++|||+||+.++|
T Consensus 202 L~~gki~l~Gr~I~VdwA~p~~~~d~---------------------------~~~~~~k~LfVgNL~~~~t 246 (578)
T TIGR01648 202 LMPGRIQLWGHVIAVDWAEPEEEVDE---------------------------DVMAKVKILYVRNLMTTTT 246 (578)
T ss_pred hhccceEecCceEEEEeecccccccc---------------------------cccccccEEEEeCCCCCCC
Confidence 864 468899999999988654320 1112357999999999987
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=240.71 Aligned_cols=189 Identities=15% Similarity=0.308 Sum_probs=164.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
.-.+-||||.||.++.|++|.-||++.|+|.+++|+.|+.+|.+||||||.|.+.+.|.+|++.||+.+|. .++.|+|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEE
Confidence 56788999999999999999999999999999999999999999999999999999999999999999986 56777776
Q ss_pred cccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCC-eeEEEEEecCC-CCCCccEEEEEeCCHHHHHHHHHH
Q 019392 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSN-TGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~-v~~v~i~~~~~-~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
.+. .+++|||+|||.+.++++|++.|+ +.++ |.+|.|..+.. ..+.||||||+|.|+..|.-|.+.
T Consensus 160 ~Sv-----------an~RLFiG~IPK~k~keeIlee~~-kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 160 VSV-----------ANCRLFIGNIPKTKKKEEILEEMK-KVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred Eee-----------ecceeEeccCCccccHHHHHHHHH-hhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 643 567999999999999999999997 6665 78887776543 468899999999999999999988
Q ss_pred hC--CeeecCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCC
Q 019392 271 MN--GVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVRC 341 (341)
Q Consensus 271 l~--~~~i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 341 (341)
|- ...+.|..+.|+||.++..... +.=...+-|||+||+.+||.
T Consensus 228 l~~g~~klwgn~~tVdWAep~~e~de---------------------------d~ms~VKvLYVRNL~~~tTe 273 (506)
T KOG0117|consen 228 LMPGKIKLWGNAITVDWAEPEEEPDE---------------------------DTMSKVKVLYVRNLMESTTE 273 (506)
T ss_pred ccCCceeecCCcceeeccCcccCCCh---------------------------hhhhheeeeeeeccchhhhH
Confidence 84 3678999999999999876631 12234678999999999983
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.7e-32 Score=263.63 Aligned_cols=208 Identities=24% Similarity=0.443 Sum_probs=168.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
...+|||+||+.++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.++|..+ .++.+.+.+
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~--~~~~i~v~~ 163 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL--NDKEVYVGR 163 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe--cCceEEEec
Confidence 45679999999999999999999999999999999986 788999999999999999999999999988 555666554
Q ss_pred ccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 019392 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~ 273 (341)
...............++|||+||+.++|+++|+++|+ .||.|.++.+.++ .+++++|||||+|++.++|.+|++.|||
T Consensus 164 ~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~-~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 164 FIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA-KFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH-hcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 4332222122344567899999999999999999996 9999999999998 4689999999999999999999999999
Q ss_pred eeec----CccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 274 VYCS----SRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 274 ~~i~----g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
..|. |+.|.|.++..+..+........... ..........++|||+||++++|
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~--------------~~~~~~~~~~~~l~V~nl~~~~~ 298 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEEL--------------QQERKMKAQGVNLYVKNLDDTVT 298 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhh--------------hhhhhcccCCCEEEEeCCCCccC
Confidence 9999 99999999887755421111000000 00112234567899999999987
No 11
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=2.4e-31 Score=217.67 Aligned_cols=172 Identities=27% Similarity=0.507 Sum_probs=157.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
..+..+.|.|.-||..+|+|+|+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||..+ ..+.|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIK 114 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIK 114 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEE
Confidence 445666799999999999999999999999999999999999999999999999999999999999999999 888999
Q ss_pred cccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
++++.++.. ......|||++||..+|..||..+|+ .||.|..-+|+.|..+|.+||.+||+|+..++|++||+.
T Consensus 115 VSyARPSs~-----~Ik~aNLYvSGlPktMtqkelE~iFs-~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSD-----SIKDANLYVSGLPKTMTQKELEQIFS-PFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChh-----hhcccceEEecCCccchHHHHHHHHH-HhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 999886643 33456899999999999999999998 999999999999999999999999999999999999999
Q ss_pred hCCeeecC--ccEEEEecCCCC
Q 019392 271 MNGVYCSS--RPMRIDVATPKK 290 (341)
Q Consensus 271 l~~~~i~g--~~i~v~~a~~k~ 290 (341)
|||..-.| .+|.|+|+....
T Consensus 189 lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcc
Confidence 99987765 579999987664
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=6.2e-31 Score=249.44 Aligned_cols=173 Identities=26% Similarity=0.503 Sum_probs=151.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||..+++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+||. |+|..+ .++.+.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~--~g~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQML--LGRPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE--CCeeeEE
Confidence 4567899999999999999999999999999999999999999999999999999999999995 899998 4556665
Q ss_pred ccccccCCCC-------ccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHH
Q 019392 192 NWATFSGSDR-------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (341)
Q Consensus 192 ~~~~~~~~~~-------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A 264 (341)
.+........ .......++|||+|||..+++++|+++|+ .||.|.+|.|+++..+|+++|||||+|.+.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~-~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFE-PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 5443211110 01112357999999999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeecCccEEEEecCC
Q 019392 265 SRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 265 ~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
.+|+..|||..|.|+.|+|.|+..
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999999764
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=6.1e-30 Score=242.44 Aligned_cols=164 Identities=20% Similarity=0.230 Sum_probs=138.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHh--CCCCCCCCCCCccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY--SGSLMPNTDQPFRL 191 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l--~~~~~~~~~~~~~~ 191 (341)
++++|||+|||+++|+++|+++|+.||.|.+|++++++ +||||+|++.++|.+|++.+ ++..+ .++.+++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYI--RGQPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEE
Confidence 46899999999999999999999999999999998754 89999999999999999875 56666 7788999
Q ss_pred ccccccCCCCcc-------ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHH
Q 019392 192 NWATFSGSDRRT-------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (341)
Q Consensus 192 ~~~~~~~~~~~~-------~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A 264 (341)
.|+......+.. ......+|||+||++++|+++|+++|+ .||.|.+|.|+++.. +|+|||+|.+.++|
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~-~~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFN-PYGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHh-ccCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 887643322111 111234799999999999999999997 999999999987632 46999999999999
Q ss_pred HHHHHHhCCeeecC--ccEEEEecCCCC
Q 019392 265 SRAMTEMNGVYCSS--RPMRIDVATPKK 290 (341)
Q Consensus 265 ~~Al~~l~~~~i~g--~~i~v~~a~~k~ 290 (341)
.+|++.|||..|.+ +.|+|.|++.+.
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 99999999999964 589999988643
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.3e-29 Score=240.27 Aligned_cols=167 Identities=18% Similarity=0.248 Sum_probs=140.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
...+|||+||++.+|+++|+++|+.||.|.+|.+.++.. +++|||+|.+.++|.+|++.|||..|.+....+++.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 445799999999999999999999999999999987652 3689999999999999999999999976555666666
Q ss_pred ccccCC-------------------CCc----------------------------------------------------
Q 019392 194 ATFSGS-------------------DRR---------------------------------------------------- 202 (341)
Q Consensus 194 ~~~~~~-------------------~~~---------------------------------------------------- 202 (341)
++.... .+.
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 542110 000
Q ss_pred -------------------cccCCCceEEeCCCCC-CCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHH
Q 019392 203 -------------------TEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (341)
Q Consensus 203 -------------------~~~~~~~~l~v~nlp~-~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~ 262 (341)
....++++|||+||++ .+++++|+++|+ .||.|.+|+|+++ .+|||||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~-~yG~V~~vki~~~-----~~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFC-VYGNVERVKFMKN-----KKETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHH-hcCCeEEEEEEeC-----CCCEEEEEECCHH
Confidence 0012456999999998 699999999996 9999999999986 2589999999999
Q ss_pred HHHHHHHHhCCeeecCccEEEEecCCCC
Q 019392 263 ERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (341)
Q Consensus 263 ~A~~Al~~l~~~~i~g~~i~v~~a~~k~ 290 (341)
+|.+||..|||..|.|+.|+|.+++.+.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEccccc
Confidence 9999999999999999999999987653
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=4e-30 Score=242.36 Aligned_cols=214 Identities=21% Similarity=0.321 Sum_probs=161.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC-cEEEEEEe-cCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIR-NKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~-v~~i~i~~-~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...++|||+|||+++|+++|.++|+.++. ++++.+.. ....++++|||||+|++.++|..|++.|+...+...++.+.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35689999999999999999999999863 44544433 33456789999999999999999999887544333678899
Q ss_pred cccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccC--CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 019392 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~--G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al 268 (341)
+.|+..............++|||+||++++++++|+++|+ .| |.|++|++++ +||||+|++.++|.+||
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~-~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFS-EFKPGKVERVKKIR--------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHH-hcCCCceEEEEeec--------CeEEEEeCCHHHHHHHH
Confidence 9998866544444444567899999999999999999996 99 9999998764 49999999999999999
Q ss_pred HHhCCeeecCccEEEEecCCCCCCCccccccchhhhcCCCCCC-CCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 269 TEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGS-NGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 269 ~~l~~~~i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
+.||+.+|+|+.|+|+|++++...... ++. + . .++.+. ............++...+++++|++.+.+
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~~~~-~~~-r--g-~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~ 354 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKKSYV-RYT-R--G-TGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPP 354 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCccccc-ccc-c--c-cCCCcccccccccccCcccCcccccccccccccccc
Confidence 999999999999999999887544211 100 0 0 111111 11111122334556789999999988754
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.8e-30 Score=210.34 Aligned_cols=175 Identities=33% Similarity=0.629 Sum_probs=145.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
++..|||||+||+.++||+-|..||+..|.|.+|+++.| ++++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhcc
Confidence 467899999999999999999999999999999999876 3455
Q ss_pred ccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 019392 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l 271 (341)
.|+.......+.......-+||+.|..+++.++|++.|. +||+|.+++|++|..|+++|||+||.|-+.++|+.||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~-pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA-PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc-cccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 565544333333344456799999999999999999997 9999999999999999999999999999999999999999
Q ss_pred CCeeecCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 272 NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 272 ~~~~i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
||..|++|.|+-.||.+|...... +. -.-......+++.+|+|||+||+..+|
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~------------~~----ltfdeV~NQssp~NtsVY~G~I~~~lt 177 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNG------------KP----LTFDEVYNQSSPDNTSVYVGNIASGLT 177 (321)
T ss_pred CCeeeccceeeccccccCccccCC------------CC----ccHHHHhccCCCCCceEEeCCcCcccc
Confidence 999999999999999998733211 11 011222355678899999999998665
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3e-29 Score=224.62 Aligned_cols=173 Identities=20% Similarity=0.345 Sum_probs=152.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
..||||++||+.++.++|.++|+.+|+|..|.++.++.++.++||+||.|.-.+++.+|+..+++..| .++.+++..+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf--~Gr~l~v~~A 82 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF--EGRILNVDPA 82 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc--cceecccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999 5566666665
Q ss_pred cccCCCCc---------------------cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccE
Q 019392 195 TFSGSDRR---------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY 253 (341)
Q Consensus 195 ~~~~~~~~---------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~ 253 (341)
........ ....+..+|.|+|||+.+.+.+|..+|+ .||.|.+|.|++.+. |+-+||
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs-~~G~V~Ei~IP~k~d-gklcGF 160 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFS-NFGKVVEIVIPRKKD-GKLCGF 160 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHh-hcceEEEEEcccCCC-CCccce
Confidence 54322220 0122367899999999999999999998 999999999997754 666699
Q ss_pred EEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCC
Q 019392 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (341)
Q Consensus 254 afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~ 291 (341)
|||.|.+..+|.+||+.+|+.+|+||+|-|.||.+|..
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 99999999999999999999999999999999988853
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.97 E-value=6.6e-30 Score=198.78 Aligned_cols=175 Identities=29% Similarity=0.566 Sum_probs=157.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
.....||||+||+..++++-|.++|-..|+|+++++.+|+.+...+|||||+|.++++|+-|++-||...+ .+++|++
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIrv 83 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIRV 83 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeEE
Confidence 45667999999999999999999999999999999999999999999999999999999999999997777 8899998
Q ss_pred ccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEE-EEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v-~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
+.+... ........+|||+||.++++|..|.+.|+ .||.+.+. +|++|..||.++|||||.|.+.+.+.+|+..
T Consensus 84 ~kas~~----~~nl~vganlfvgNLd~~vDe~~L~dtFs-afG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 84 NKASAH----QKNLDVGANLFVGNLDPEVDEKLLYDTFS-AFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred Eecccc----cccccccccccccccCcchhHHHHHHHHH-hccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 877622 12233447899999999999999999998 99987763 7889989999999999999999999999999
Q ss_pred hCCeeecCccEEEEecCCCCCCC
Q 019392 271 MNGVYCSSRPMRIDVATPKKASG 293 (341)
Q Consensus 271 l~~~~i~g~~i~v~~a~~k~~~~ 293 (341)
+||..+.+++|+|+++..+...+
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hccchhcCCceEEEEEEecCCCc
Confidence 99999999999999998887654
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=2.2e-28 Score=235.21 Aligned_cols=172 Identities=17% Similarity=0.297 Sum_probs=140.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhc------------CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHh
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHT------------GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~------------G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 177 (341)
......++|||||||+.+|+++|+++|..+ +.|..+.+. +.+|||||+|.+.++|..|| .|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-cC
Confidence 455678999999999999999999999975 234444443 34599999999999999999 59
Q ss_pred CCCCCCCCCCCcccccccccCC------------------------CCccccCCCceEEeCCCCCCCCHHHHHHHhcccC
Q 019392 178 SGSLMPNTDQPFRLNWATFSGS------------------------DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233 (341)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~ 233 (341)
+|..|. +..+++.+...... .........++|||+|||+.+++++|+++|. .|
T Consensus 243 ~g~~~~--g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~ 319 (509)
T TIGR01642 243 DSIIYS--NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE-SF 319 (509)
T ss_pred CCeEee--CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH-hc
Confidence 999884 45555543221100 0000123457899999999999999999996 99
Q ss_pred CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCC
Q 019392 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (341)
Q Consensus 234 G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~ 291 (341)
|.|..+.|+++..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.....
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~ 377 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGAN 377 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCC
Confidence 9999999999999999999999999999999999999999999999999999876543
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.4e-28 Score=198.02 Aligned_cols=175 Identities=27% Similarity=0.491 Sum_probs=157.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
....|||++||..+|..+|+.+|++||.|..-+|..|..+|.+||.+||.|...++|+.||+.|||..-.+...+|.+.|
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 45579999999999999999999999999999999999999999999999999999999999999999988888888887
Q ss_pred ccccCCCC--------------c--------------------------------------------cccCCCceEEeCC
Q 019392 194 ATFSGSDR--------------R--------------------------------------------TEACSDLSIFVGD 215 (341)
Q Consensus 194 ~~~~~~~~--------------~--------------------------------------------~~~~~~~~l~v~n 215 (341)
+....... + .......+|||.|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 76221110 0 0112346899999
Q ss_pred CCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCC
Q 019392 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (341)
Q Consensus 216 lp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k 289 (341)
|.++.+|.-|+.+|. .||.|.+|+|++|..|.+.||||||.+.+.++|..||..|||..+++|.|.|+|...|
T Consensus 286 Lspd~de~~LWQlFg-pFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 286 LSPDADESILWQLFG-PFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCCCchHhHHHHHhC-cccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999997 9999999999999999999999999999999999999999999999999999997765
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.7e-28 Score=211.38 Aligned_cols=174 Identities=20% Similarity=0.330 Sum_probs=153.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-CcEEEEEEecCC-CCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQ-TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G-~v~~i~i~~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...++|||||||.+.++++|.+.|++.+ -|++|.+..++. ..+.||||||+|++...|..|.++|-...|.-.+..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 4778899999999999999999999987 477888877653 35788999999999999999999887766666788899
Q ss_pred cccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
|+|+.+...........-..|||+||+.++|||.|+++|+ .||.|++|+.++| ||||.|.++++|.+|++.
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~-~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFN-EFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHH-hccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 9999988776666666667899999999999999999996 9999999998876 999999999999999999
Q ss_pred hCCeeecCccEEEEecCCCCCCCcc
Q 019392 271 MNGVYCSSRPMRIDVATPKKASGYQ 295 (341)
Q Consensus 271 l~~~~i~g~~i~v~~a~~k~~~~~~ 295 (341)
+||++|+|..|.|.+|+|-.+.+..
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred hcCceecCceEEEEecCChhhhccc
Confidence 9999999999999999998766543
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.7e-26 Score=222.09 Aligned_cols=173 Identities=19% Similarity=0.314 Sum_probs=144.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||+.+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.+.|..||..|+|..| .+..|.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~--~~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT--GDNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999 45566666
Q ss_pred cccccCCCCc-----------------------cccCCCceEEeCCCCCC--C--------CHHHHHHHhcccCCCeeEE
Q 019392 193 WATFSGSDRR-----------------------TEACSDLSIFVGDLAPD--V--------TDSILQETFSSKYPSVKGA 239 (341)
Q Consensus 193 ~~~~~~~~~~-----------------------~~~~~~~~l~v~nlp~~--~--------t~~~l~~~F~e~~G~v~~v 239 (341)
++........ ....+..+|+|.||... + ..++|+++|+ .||.|++|
T Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~-~~G~v~~v 449 (509)
T TIGR01642 371 RACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFS-KYGPLINI 449 (509)
T ss_pred ECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHH-hcCCeeEE
Confidence 6543211100 01235678999999632 1 2367999996 99999999
Q ss_pred EEEecC---CCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 240 KVIIDS---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 240 ~i~~~~---~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
+|+++. .++..+|+|||+|++.++|.+||..|||..|+|+.|.|.|...
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 998753 3456789999999999999999999999999999999999654
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1e-27 Score=205.05 Aligned_cols=174 Identities=18% Similarity=0.365 Sum_probs=153.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
.-.|+||||.|.+++.|+.||..|..||+|++|.+.+|+.+++.||||||+|+-+|.|..|++.+||..+ .++.+++.
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml--GGRNiKVg 188 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVG 188 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc--cCcccccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999 55566665
Q ss_pred cccccCCCCc------cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHH
Q 019392 193 WATFSGSDRR------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 193 ~~~~~~~~~~------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~ 266 (341)
.......... .+....++|||..+.++++|+||+..| |.||+|.+|.+.++...+.+|||+||+|.+..+-.+
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 4332222111 233456799999999999999999999 599999999999999999999999999999999999
Q ss_pred HHHHhCCeeecCccEEEEecCCC
Q 019392 267 AMTEMNGVYCSSRPMRIDVATPK 289 (341)
Q Consensus 267 Al~~l~~~~i~g~~i~v~~a~~k 289 (341)
||..||-+.++|..|+|-.+...
T Consensus 268 AiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred HhhhcchhhcccceEecccccCC
Confidence 99999999999999999765443
No 24
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7e-27 Score=211.15 Aligned_cols=179 Identities=27% Similarity=0.521 Sum_probs=157.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (341)
..|||| +++||..|+++|+.+|+|.++++++|. + +.|||||.|.++++|++||..+|...+ .++++++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 468999 899999999999999999999999998 5 999999999999999999999999999 89999999987
Q ss_pred ccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee
Q 019392 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~ 275 (341)
..... |||.||+++++..+|.++|+ .||.|.+|++.+|.+ | ++|| ||+|+++++|.+||+.+||..
T Consensus 74 rd~~~----------~~i~nl~~~~~~~~~~d~f~-~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 74 RDPSL----------VFIKNLDESIDNKSLYDTFS-EFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred cCCce----------eeecCCCcccCcHHHHHHHH-hhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 54322 99999999999999999997 999999999999954 5 9999 999999999999999999999
Q ss_pred ecCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 276 i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
+.+++|.|....++..+...... .-..-+++||+|+..++|
T Consensus 140 l~~kki~vg~~~~~~er~~~~~~------------------------~~~~~t~v~vk~~~~~~~ 180 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLGE------------------------YKKRFTNVYVKNLEEDST 180 (369)
T ss_pred cCCCeeEEeeccchhhhcccccc------------------------hhhhhhhhheeccccccc
Confidence 99999999998888765421110 112456789998886654
No 25
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3e-27 Score=194.36 Aligned_cols=181 Identities=24% Similarity=0.454 Sum_probs=157.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCC-CCCCCCCc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~-~~~~~~~~ 189 (341)
+..+.++||||.|...-.|||++.+|..||.|++|.+.+.. .|.+||+|||.|.+..+|..||+.|+|.. +.|....+
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 44578999999999999999999999999999999999987 79999999999999999999999999964 55666666
Q ss_pred ccccccccCCC---------------------------------------------------------------------
Q 019392 190 RLNWATFSGSD--------------------------------------------------------------------- 200 (341)
Q Consensus 190 ~~~~~~~~~~~--------------------------------------------------------------------- 200 (341)
.|.+++...+.
T Consensus 94 VVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ang 173 (371)
T KOG0146|consen 94 VVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANG 173 (371)
T ss_pred EEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcc
Confidence 66665500000
Q ss_pred --------------------------------------------------------------------------------
Q 019392 201 -------------------------------------------------------------------------------- 200 (341)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (341)
T Consensus 174 l~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 174 LAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQY 253 (371)
T ss_pred cccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHH
Confidence
Q ss_pred ------------------------CccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEE
Q 019392 201 ------------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256 (341)
Q Consensus 201 ------------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV 256 (341)
...+..+.|.|||..||.++.+.||...|. .||.|.+.+++.|+.|+.+|+|+||
T Consensus 254 ~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~-PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 254 AAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL-PFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred hhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc-cccceeeeeeeehhccccccceeeE
Confidence 001124568999999999999999999997 9999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCCC
Q 019392 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (341)
Q Consensus 257 ~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~~ 293 (341)
.|++..+|..||..|||+.|+-++|+|.+.++|+..+
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 9999999999999999999999999999999987653
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.8e-26 Score=205.63 Aligned_cols=174 Identities=29% Similarity=0.503 Sum_probs=149.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
.-.|+|+||||.+.+.+|..+|+.||.|.+|.|.+.+ .|+-.|||||.|....+|..||+.+|+..| .+++|-++|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeee
Confidence 5679999999999999999999999999999999776 455569999999999999999999999999 7788888887
Q ss_pred cccCCCC-------------------------------------------------------------------------
Q 019392 195 TFSGSDR------------------------------------------------------------------------- 201 (341)
Q Consensus 195 ~~~~~~~------------------------------------------------------------------------- 201 (341)
-.+..-.
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 6110000
Q ss_pred ------------ccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 019392 202 ------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (341)
Q Consensus 202 ------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~ 269 (341)
+.+.....+|||+|||+++|+++|.++|+ .||.|..+.|+.++.|+.++|.|||.|.+..+|..||.
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs-kFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS-KFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHH-hhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 00001225899999999999999999997 99999999999999999999999999999999999998
Q ss_pred Hh-----CC-eeecCccEEEEecCCCCCC
Q 019392 270 EM-----NG-VYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 270 ~l-----~~-~~i~g~~i~v~~a~~k~~~ 292 (341)
.. .| ..|+||-|+|..+..+...
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHH
Confidence 77 23 7889999999998877543
No 27
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=3.4e-27 Score=196.33 Aligned_cols=150 Identities=22% Similarity=0.459 Sum_probs=137.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccccc
Q 019392 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (341)
Q Consensus 117 ~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~ 196 (341)
+|||||||.++++.+|+.+|++||+|.+|.|++ .|+||+.++...|+.||..|++..| .+..|+|+-++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtL--hg~nInVeaSks 73 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASKS 73 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhccccee--cceEEEEEeccc
Confidence 699999999999999999999999999999998 4899999999999999999999999 666677765554
Q ss_pred cCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee
Q 019392 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (341)
Q Consensus 197 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i 276 (341)
+ ...+.+|+|+||.+.++..+|+..| ++||.|.++.|++| |+||.|+..++|..||+.|+++++
T Consensus 74 K-------sk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 74 K-------SKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred c-------CCCccccccCCCCccccCHHHhhhh-cccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccc
Confidence 3 4467799999999999999999999 59999999999976 999999999999999999999999
Q ss_pred cCccEEEEecCCCCCC
Q 019392 277 SSRPMRIDVATPKKAS 292 (341)
Q Consensus 277 ~g~~i~v~~a~~k~~~ 292 (341)
.|++++|.+++++-..
T Consensus 138 ~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLRT 153 (346)
T ss_pred ccceeeeeeecccccc
Confidence 9999999999887544
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=3.4e-24 Score=203.36 Aligned_cols=167 Identities=20% Similarity=0.357 Sum_probs=140.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
.++|||+|||..+|+++|+++|+.||.|..|.++.+..+|+++|||||+|.+.++|.+|++.|+|..| .++.|+|.|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i--~g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL--AGRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE--CCEEEEEEEc
Confidence 78999999999999999999999999999999999998899999999999999999999999999888 5677777774
Q ss_pred cccCCC--------------------------------------------------------------C-----------
Q 019392 195 TFSGSD--------------------------------------------------------------R----------- 201 (341)
Q Consensus 195 ~~~~~~--------------------------------------------------------------~----------- 201 (341)
...... .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 210000 0
Q ss_pred ------------ccccCCCceEEeCCCCCCCC----------HHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeC
Q 019392 202 ------------RTEACSDLSIFVGDLAPDVT----------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259 (341)
Q Consensus 202 ------------~~~~~~~~~l~v~nlp~~~t----------~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~ 259 (341)
.......++|+|.||-...+ .+||++.|+ +||.|++|.|.. ....|++||+|.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~-k~G~v~~v~v~~----~~~~G~~fV~F~ 418 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECS-KYGGVVHIYVDT----KNSAGKIYLKFS 418 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHH-hcCCeeEEEEeC----CCCceeEEEEEC
Confidence 00113456788999854433 368999996 999999999864 346799999999
Q ss_pred CHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 260 DENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 260 ~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
+.++|.+|++.|||..++|+.|.|.|...
T Consensus 419 ~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred CHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 99999999999999999999999998754
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.9e-24 Score=189.00 Aligned_cols=178 Identities=24% Similarity=0.437 Sum_probs=157.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCC-CCCCCCCCccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS-LMPNTDQPFRL 191 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~-~~~~~~~~~~~ 191 (341)
.+.++||||-|+..+||.+|+++|++||.|++|.|.+|. .+.+||||||.|.+.+.|..||+.|||. .++|...++.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 457899999999999999999999999999999999997 7999999999999999999999999996 47788899999
Q ss_pred ccccccCCCCc---------------------------------------------------------------------
Q 019392 192 NWATFSGSDRR--------------------------------------------------------------------- 202 (341)
Q Consensus 192 ~~~~~~~~~~~--------------------------------------------------------------------- 202 (341)
.|++......-
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 88881110000
Q ss_pred --------------------------------------------------------------------------------
Q 019392 203 -------------------------------------------------------------------------------- 202 (341)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (341)
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence
Q ss_pred ----------------------------------------------------------cccCCCceEEeCCCCCCCCHHH
Q 019392 203 ----------------------------------------------------------TEACSDLSIFVGDLAPDVTDSI 224 (341)
Q Consensus 203 ----------------------------------------------------------~~~~~~~~l~v~nlp~~~t~~~ 224 (341)
.+......|||.+||.+.-+.+
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 0002234799999999999999
Q ss_pred HHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCC
Q 019392 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 225 l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~ 292 (341)
|...|. .||.|.+.++..|+.|+-+|.|+||.|++..+|.+||..|||+.|+.++++|...+.+...
T Consensus 441 l~~~f~-pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 441 LIATFQ-PFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred HHHHhc-cccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 999995 9999999999999999999999999999999999999999999999999999998776543
No 30
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.91 E-value=1.8e-24 Score=188.73 Aligned_cols=175 Identities=26% Similarity=0.449 Sum_probs=148.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
+.++|||++|+|+++++.|++.|..||+|.+|.+++|+.+++++||+||+|.+.+...++|.. ....|+ ++.|....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~d--gr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLD--GRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccC--Ccccccee
Confidence 788999999999999999999999999999999999999999999999999999999998854 333342 33343333
Q ss_pred ccccCCCCc-cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 194 ATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 194 ~~~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
+.......+ .......++||++||.++++++|+++| ++||.|..+.++.|..+.+++||+||.|.+++++++++ ...
T Consensus 82 av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~ 159 (311)
T KOG4205|consen 82 AVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQK 159 (311)
T ss_pred ccCcccccccccccceeEEEecCcCCCCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceec-ccc
Confidence 332222111 111246699999999999999999999 59999999999999999999999999999999999998 678
Q ss_pred CeeecCccEEEEecCCCCCCC
Q 019392 273 GVYCSSRPMRIDVATPKKASG 293 (341)
Q Consensus 273 ~~~i~g~~i~v~~a~~k~~~~ 293 (341)
-+.|.++.+.|..|.++....
T Consensus 160 f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eeeecCceeeEeeccchhhcc
Confidence 899999999999999997654
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.5e-24 Score=191.89 Aligned_cols=203 Identities=25% Similarity=0.415 Sum_probs=161.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccccccc
Q 019392 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS 197 (341)
Q Consensus 118 l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~ 197 (341)
|||.||+.++|..+|.++|+.||.|++|++..+. .| ++|| ||+|+++++|.+|++.+||..+.+ ..+.+......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~--kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNG--KKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCC--CeeEEeeccch
Confidence 9999999999999999999999999999999997 45 9999 999999999999999999999944 44444333322
Q ss_pred CCCCc---cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCe
Q 019392 198 GSDRR---TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (341)
Q Consensus 198 ~~~~~---~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~ 274 (341)
..... ........++|.|++.+++++.|.++|. .||.|.++.++.+. .++++||+||.|++.++|..|++.||+.
T Consensus 154 ~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~-~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 154 EEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFS-AYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred hhhcccccchhhhhhhhheeccccccchHHHHHhhc-ccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCC
Confidence 11111 1233456799999999999999999996 99999999999984 5779999999999999999999999999
Q ss_pred eecCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCC
Q 019392 275 YCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVRC 341 (341)
Q Consensus 275 ~i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 341 (341)
.+++..+.|..+..+.+.....+.... .....+.......+|||+||+..+++
T Consensus 232 ~~~~~~~~V~~aqkk~e~~~~l~~~~~--------------~~~~~~~~~~~~~nl~vknld~~~~~ 284 (369)
T KOG0123|consen 232 IFGDKELYVGRAQKKSEREAELKRKFE--------------QEFAKRSVSLQGANLYVKNLDETLSD 284 (369)
T ss_pred cCCccceeecccccchhhHHHHhhhhH--------------hhhhhccccccccccccccCccccch
Confidence 999999999998885444321111000 01112333556789999999988764
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=194.32 Aligned_cols=174 Identities=18% Similarity=0.351 Sum_probs=146.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCC---CCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 117 ~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~---g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
+|||.||++++|.++|..+|...|.|.++.|...+.. -.|.|||||+|.+.++|..|++.|+|+.|+|+...+++..
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988765422 1366999999999999999999999999977766666655
Q ss_pred ccccCCCCc--cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 019392 194 ATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (341)
Q Consensus 194 ~~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l 271 (341)
........+ ......++|+|+|||+..+..+|+++|. .||.|.+|+|++....+-++|||||+|-+..+|.+|++.|
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~-aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFT-AFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHh-cccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 222111111 1222356899999999999999999997 9999999999987556678999999999999999999999
Q ss_pred CCeeecCccEEEEecCCCCC
Q 019392 272 NGVYCSSRPMRIDVATPKKA 291 (341)
Q Consensus 272 ~~~~i~g~~i~v~~a~~k~~ 291 (341)
.++.+.||+|.+.|+.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999987654
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.89 E-value=1.1e-23 Score=189.93 Aligned_cols=179 Identities=22% Similarity=0.441 Sum_probs=152.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
..+.+.+|||+--|...+++.+|.+||+.+|.|.+|+++.|+.+++++|.|||+|.+.+....|| .|.|..+ .+.+|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl--lg~pv 250 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL--LGVPV 250 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc--cCcee
Confidence 45578899999999999999999999999999999999999999999999999999999999999 5899988 55555
Q ss_pred ccccccccCCC--------C-ccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCC
Q 019392 190 RLNWATFSGSD--------R-RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (341)
Q Consensus 190 ~~~~~~~~~~~--------~-~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~ 260 (341)
.+......... . ..-..+-..|||+||.+++++++|+.+| |.||.|+.|.+.+|..||.++||+||+|.+
T Consensus 251 ~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 251 IVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred EecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEec
Confidence 55333211100 0 0111222349999999999999999999 599999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCeeecCccEEEEecCCCCCC
Q 019392 261 ENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 261 ~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~ 292 (341)
.++|.+|++.|||++|-|+.|+|.....+-..
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEeeeeccc
Confidence 99999999999999999999999987766544
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.86 E-value=2e-21 Score=174.93 Aligned_cols=104 Identities=26% Similarity=0.488 Sum_probs=93.7
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++|+++|+++|+ .||.|++|+|++|+.+++++|||||+|.+.++|++||+.||+..|.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~-~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFR-TIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 344678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 284 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
.|+++.... ...++|||+|||.++|
T Consensus 182 ~~a~p~~~~--------------------------------~~~~~lfV~nLp~~vt 206 (346)
T TIGR01659 182 SYARPGGES--------------------------------IKDTNLYVTNLPRTIT 206 (346)
T ss_pred ecccccccc--------------------------------cccceeEEeCCCCccc
Confidence 998763321 1356899999999987
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=4.5e-20 Score=174.78 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
..++|||+||++++++++|+++|+.||.|.+|++.+|+.+|+++|||||+|.+.++|.+|++.||+..| .++.++|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el--gGr~LrV~k 280 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGK 280 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEe
Confidence 457999999999999999999999999999999999998999999999999999999999999999988 444444433
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=4.9e-20 Score=145.56 Aligned_cols=86 Identities=34% Similarity=0.650 Sum_probs=80.7
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
...++|||+|||++++|++|+++|+ .||.|.+|+|++|+.+++++|||||+|++.++|++||+.||+..|+|+.|+|+|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFA-HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3567899999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 019392 286 ATPKKAS 292 (341)
Q Consensus 286 a~~k~~~ 292 (341)
+..+...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9876543
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=7.5e-20 Score=169.66 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=150.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....+.|+|+|||..+..++|..+|..||+|..+.+... | .-++|+|.+..+|..|.+.|....+ ...++.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~--k~~ply 452 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRF--KSAPLY 452 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhh--ccCccc
Confidence 3456678999999999999999999999999999855422 1 2499999999999999999999877 555555
Q ss_pred cccccccCCC--------------C-------c------------------------cccCCCceEEeCCCCCCCCHHHH
Q 019392 191 LNWATFSGSD--------------R-------R------------------------TEACSDLSIFVGDLAPDVTDSIL 225 (341)
Q Consensus 191 ~~~~~~~~~~--------------~-------~------------------------~~~~~~~~l~v~nlp~~~t~~~l 225 (341)
+.|+....-. . + ......++|||.||++++|.++|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 5554411100 0 0 00011234999999999999999
Q ss_pred HHHhcccCCCeeEEEEEecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCCCccccccchh
Q 019392 226 QETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQA 302 (341)
Q Consensus 226 ~~~F~e~~G~v~~v~i~~~~~~---~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~~~~~~~~~~~ 302 (341)
..+|. ..|.|.++.|.+.+.. -.+.|||||+|.+.++|..|++.|+|+.|+|+.|.|+++..+.....
T Consensus 533 ~~~F~-k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~-------- 603 (725)
T KOG0110|consen 533 EDLFS-KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTV-------- 603 (725)
T ss_pred HHHHH-hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccc--------
Confidence 99997 9999999998876432 13559999999999999999999999999999999999983332210
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 303 LVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
+.........++|+|+|||...|
T Consensus 604 ---------------gK~~~~kk~~tKIlVRNipFeAt 626 (725)
T KOG0110|consen 604 ---------------GKKKSKKKKGTKILVRNIPFEAT 626 (725)
T ss_pred ---------------ccccccccccceeeeeccchHHH
Confidence 01112223367999999998754
No 38
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.81 E-value=2.1e-18 Score=140.15 Aligned_cols=163 Identities=22% Similarity=0.402 Sum_probs=138.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 114 ETKTIWIGDLFHWMDETFLHN----CFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~----~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
+..||||.||+..+..++|++ +|+.||.|.+|...+ +.+.+|-|||.|++.+.|..|++.|+|..+ .++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~m 82 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPF--YGKPM 82 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcc--cCchh
Confidence 344999999999999999998 999999999998876 457889999999999999999999999999 77888
Q ss_pred ccccccccCCCCc---------------------------------------------cccCCCceEEeCCCCCCCCHHH
Q 019392 190 RLNWATFSGSDRR---------------------------------------------TEACSDLSIFVGDLAPDVTDSI 224 (341)
Q Consensus 190 ~~~~~~~~~~~~~---------------------------------------------~~~~~~~~l~v~nlp~~~t~~~ 224 (341)
++.++........ ....+...||+.|||.+++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 8777763321110 1134567899999999999999
Q ss_pred HHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec-CccEEEEecC
Q 019392 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVAT 287 (341)
Q Consensus 225 l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~-g~~i~v~~a~ 287 (341)
|..+|. .|....+|+++... ++.|||+|.+...|..|...+.+..|. ...+.|.+++
T Consensus 163 l~~lf~-qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFE-QFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHh-hCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999995 99999999998653 368999999999999999999998887 7788888765
No 39
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=5.3e-18 Score=151.52 Aligned_cols=167 Identities=20% Similarity=0.239 Sum_probs=127.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
.....|.+++|||++|++||.+||+.|+ |.++.+.+. +|+..|-|||+|.+.+++++||+ .+...+ ..+-|.|-
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~m--g~RYIEVf 81 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESM--GHRYIEVF 81 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHh--CCceEEEE
Confidence 4556799999999999999999999996 777666664 68999999999999999999997 465555 34444442
Q ss_pred cccccC------CCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeE-EEEEecCCCCCCccEEEEEeCCHHHHH
Q 019392 193 WATFSG------SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERS 265 (341)
Q Consensus 193 ~~~~~~------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~~~A~ 265 (341)
.+.... ............|.+++||+.+|++||.++|+ -.-.|.. |.++.+. .+++.|-|||.|++.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFa-GL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFA-GLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhc-CCcccccceeeeccC-CCCcccceEEEecCHHHHH
Confidence 221111 11111124566899999999999999999996 5555555 4466664 4789999999999999999
Q ss_pred HHHHHhCCeeecCccEEEEecCC
Q 019392 266 RAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 266 ~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
+|| .-|...|+.|.|.|-.+..
T Consensus 160 ~Al-~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 160 IAL-GRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred HHH-HHHHHhhccceEEeehhHH
Confidence 999 5577889999999876543
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=5.9e-18 Score=132.42 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=127.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||.++-|.+|.++|-+||.|.+|.+..-. ..-+||||+|++..+|+.||..-+|..+++. .++|
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~--rLRV 77 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC--RLRV 77 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcc--eEEE
Confidence 3578999999999999999999999999999999886532 2347999999999999999999999988554 4555
Q ss_pred ccccccCCCC---------------------ccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCC
Q 019392 192 NWATFSGSDR---------------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRT 250 (341)
Q Consensus 192 ~~~~~~~~~~---------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~ 250 (341)
+++....... .........|.|.+||.+-++.||++++. +-|+|-...+.+|
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmR-eaGdvCfadv~rD------ 150 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMR-EAGDVCFADVQRD------ 150 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHH-hhCCeeeeeeecc------
Confidence 5544221110 01123445799999999999999999997 8999988888877
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCeeec--CccEEEEe
Q 019392 251 KGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDV 285 (341)
Q Consensus 251 ~g~afV~F~~~~~A~~Al~~l~~~~i~--g~~i~v~~ 285 (341)
|++.|+|...|+-+-|++.|....+. |....+..
T Consensus 151 -g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 151 -GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred -cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 47999999999999999999876654 44444443
No 41
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.77 E-value=7.4e-18 Score=135.77 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=124.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEe-cCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCC-CCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR-NKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQP 188 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~-~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~-~~~~ 188 (341)
.....|||||.+||.++...+|..+|..|--.+.+.+.. ++...-.+.+|||.|.+...|..|++.|||..|+- ....
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 456789999999999999999999999987666666654 33333466899999999999999999999998853 4455
Q ss_pred cccccccccCCCCcc-----------------------------------------------------------------
Q 019392 189 FRLNWATFSGSDRRT----------------------------------------------------------------- 203 (341)
Q Consensus 189 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 203 (341)
+++++++......+.
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 666555522111110
Q ss_pred ----------------ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHH
Q 019392 204 ----------------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (341)
Q Consensus 204 ----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A 267 (341)
......+|||.||..+++|++|+.+|+ .|.....++|... .| ...|||+|++.+.|..|
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~-~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLS-RYPGFHILKIRAR--GG--MPVAFADFEEIEQATDA 264 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHH-hCCCceEEEEecC--CC--cceEeecHHHHHHHHHH
Confidence 001224899999999999999999997 9998887776532 22 34899999999999999
Q ss_pred HHHhCCeeec
Q 019392 268 MTEMNGVYCS 277 (341)
Q Consensus 268 l~~l~~~~i~ 277 (341)
+..|.|..|.
T Consensus 265 m~~lqg~~~s 274 (284)
T KOG1457|consen 265 MNHLQGNLLS 274 (284)
T ss_pred HHHhhcceec
Confidence 9999997763
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=3.4e-18 Score=154.66 Aligned_cols=166 Identities=19% Similarity=0.342 Sum_probs=128.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
...||||||.+++++++|+.+|+.||.|..|.+.+|..+|.++||+||+|.+.+.|.+|+..|||..| .++.|+|...
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~v 355 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSVV 355 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEEe
Confidence 33499999999999999999999999999999999999999999999999999999999999999666 6666665322
Q ss_pred cccCCCCc-------------------------------------------------------------------ccc--
Q 019392 195 TFSGSDRR-------------------------------------------------------------------TEA-- 205 (341)
Q Consensus 195 ~~~~~~~~-------------------------------------------------------------------~~~-- 205 (341)
........ ...
T Consensus 356 ~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (549)
T KOG0147|consen 356 TERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADA 435 (549)
T ss_pred eeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccc
Confidence 20000000 000
Q ss_pred -----CCCceEEeCCCC--CCCC--------HHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 206 -----CSDLSIFVGDLA--PDVT--------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 206 -----~~~~~l~v~nlp--~~~t--------~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
.++.++.|.|+= .+.| .+|+.+.+. +||.|..|.|.++ +-|+.||.|.+.+.|..|++.
T Consensus 436 ~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~-k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~a 509 (549)
T KOG0147|consen 436 SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECG-KHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKA 509 (549)
T ss_pred ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHH-hcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHH
Confidence 122344444431 1111 267888886 9999998877543 348999999999999999999
Q ss_pred hCCeeecCccEEEEecCC
Q 019392 271 MNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 271 l~~~~i~g~~i~v~~a~~ 288 (341)
|||..|.|+.|++.|-..
T Consensus 510 lhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 510 LHGRWFAGRMITAKYLPL 527 (549)
T ss_pred HhhhhhccceeEEEEeeh
Confidence 999999999999998644
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.75 E-value=8.2e-17 Score=141.55 Aligned_cols=170 Identities=17% Similarity=0.272 Sum_probs=138.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHH-hcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~-~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
....|.+||.|||+++...+|++||. +.|+|+.|.+..|. +|+++|+|.|+|+++|.+++|++.|+...+ .++++.
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~--~GR~l~ 117 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEV--NGRELV 117 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccc--cCceEE
Confidence 34556799999999999999999997 47899999999996 899999999999999999999999999999 444444
Q ss_pred ccccccc--------------------------------------------CC--CCc----------------------
Q 019392 191 LNWATFS--------------------------------------------GS--DRR---------------------- 202 (341)
Q Consensus 191 ~~~~~~~--------------------------------------------~~--~~~---------------------- 202 (341)
+...... .. .+.
T Consensus 118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf 197 (608)
T KOG4212|consen 118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF 197 (608)
T ss_pred EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence 3222100 00 000
Q ss_pred ------------cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 203 ------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 203 ------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
.......++||.||.+.+..+.|.+.|. -.|.|+.|.+-.|+. |.++|||.++|..+-+|-.||..
T Consensus 198 gl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfg-mAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 198 GLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFG-MAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred cchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhc-cceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHh
Confidence 0112234799999999999999999997 999999999988866 79999999999999999999999
Q ss_pred hCCeeecCccEEEEec
Q 019392 271 MNGVYCSSRPMRIDVA 286 (341)
Q Consensus 271 l~~~~i~g~~i~v~~a 286 (341)
|++.-+..++..++..
T Consensus 276 l~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 276 LDRQGLFDRRMTVRLD 291 (608)
T ss_pred hccCCCccccceeecc
Confidence 9987777777777764
No 44
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.1e-18 Score=137.85 Aligned_cols=83 Identities=24% Similarity=0.485 Sum_probs=80.2
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
...++|.|.||+.+++|++|+++|. .||.|.+|.|.+|++||.+||||||.|++.++|.+||+.|||+-++.-.|+|+|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~-~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFR-PFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHhh-ccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3677999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 019392 286 ATPK 289 (341)
Q Consensus 286 a~~k 289 (341)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=2.5e-17 Score=130.11 Aligned_cols=84 Identities=32% Similarity=0.536 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+||++++|+++|+++|+.||.|.+|+++.|+.+++++|||||+|++.++|+.||+.|++..| .++.++|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999 6678888
Q ss_pred cccccc
Q 019392 192 NWATFS 197 (341)
Q Consensus 192 ~~~~~~ 197 (341)
.|+...
T Consensus 109 ~~a~~~ 114 (144)
T PLN03134 109 NPANDR 114 (144)
T ss_pred EeCCcC
Confidence 887654
No 46
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.73 E-value=3.1e-16 Score=134.36 Aligned_cols=173 Identities=16% Similarity=0.275 Sum_probs=138.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEE--------EEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~--------i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
....+.|||+|||.++|.+++.++|++||.|.. |++.++. .|..+|-|+|.|-..++++.|++.|++..+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~- 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL- 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc-
Confidence 445667999999999999999999999996643 8899987 599999999999999999999999999999
Q ss_pred CCCCCcccccccccCCC---------------------------------CccccCCCceEEeCCCCC----CCC-----
Q 019392 184 NTDQPFRLNWATFSGSD---------------------------------RRTEACSDLSIFVGDLAP----DVT----- 221 (341)
Q Consensus 184 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~v~nlp~----~~t----- 221 (341)
++..++|..+.+.... ........++|.|.|+=. ..+
T Consensus 209 -rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 209 -RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred -cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 6777777666532110 112223457888888731 222
Q ss_pred --HHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCC
Q 019392 222 --DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 222 --~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~ 292 (341)
.++|++.+. +||.|.+|.|.- ..+.|.+-|.|.+.++|..||+.|+|..++||.|..++..-+...
T Consensus 288 dlkedl~eec~-K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~ 355 (382)
T KOG1548|consen 288 DLKEDLTEECE-KFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKF 355 (382)
T ss_pred HHHHHHHHHHH-HhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCccee
Confidence 366778885 999999988763 346789999999999999999999999999999999987666543
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.72 E-value=1.1e-17 Score=130.91 Aligned_cols=103 Identities=30% Similarity=0.518 Sum_probs=91.5
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
....+|||+||+..++++.|.++|- ..|.|.+++|++|+.+...+|||||+|.++|+|+=|++.||...+.||+|+|..
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~i-qagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFI-QAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHH-hcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3456999999999999999999997 999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 286 a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
+...... ...+.+|||+||++++.
T Consensus 86 as~~~~n-------------------------------l~vganlfvgNLd~~vD 109 (203)
T KOG0131|consen 86 ASAHQKN-------------------------------LDVGANLFVGNLDPEVD 109 (203)
T ss_pred ccccccc-------------------------------ccccccccccccCcchh
Confidence 8722211 12347899999999875
No 48
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1e-17 Score=137.71 Aligned_cols=152 Identities=19% Similarity=0.351 Sum_probs=126.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (341)
..|||++||+.+.+.+|..||..||.+.++.+.. ||+||+|.+..+|..|+..+++..|.+.. +.+.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4699999999999999999999999999987765 79999999999999999999999996554 6677766
Q ss_pred cc------CC---------CCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCC
Q 019392 196 FS------GS---------DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (341)
Q Consensus 196 ~~------~~---------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~ 260 (341)
.. .. .........+.|.|.++...+.+.+|.+.|. .+|.+....+ .++++||+|++
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~-~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR-PAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc-ccCCCchhhh--------hccccceeehh
Confidence 31 11 0111234556899999999999999999996 9999955443 23589999999
Q ss_pred HHHHHHHHHHhCCeeecCccEEEEec
Q 019392 261 ENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 261 ~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
.++|.+|+..|++..+.++.|++...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999443
No 49
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=1.7e-17 Score=135.25 Aligned_cols=83 Identities=34% Similarity=0.510 Sum_probs=75.4
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
+...++|||++|+|++..|+|+++| |+||+|++..|+.|+.+|++||||||+|+|.++|.+|++.. +-.|+||+..|.
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcn 86 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCN 86 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccc
Confidence 3455689999999999999999999 59999999999999999999999999999999999999654 478999999999
Q ss_pred ecCCC
Q 019392 285 VATPK 289 (341)
Q Consensus 285 ~a~~k 289 (341)
+|.-.
T Consensus 87 lA~lg 91 (247)
T KOG0149|consen 87 LASLG 91 (247)
T ss_pred hhhhc
Confidence 87763
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=8.2e-17 Score=111.70 Aligned_cols=70 Identities=37% Similarity=0.780 Sum_probs=67.0
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
|||+|||.++++++|+++|+ .||.|..+.+..+ .++..+|||||+|++.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFS-QFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHH-TTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHH-Hhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999997 9999999999998 6789999999999999999999999999999999986
No 51
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=6.9e-17 Score=137.33 Aligned_cols=87 Identities=22% Similarity=0.421 Sum_probs=78.5
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
......++|+|+|||+...|-||+.+| ++||.|.+|+|+.+. .-+||||||+|++.+||++|..+|||..|.||+|+
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF-~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMF-EKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHH-HhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 334566799999999999999999999 599999999999873 45899999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 019392 283 IDVATPKKAS 292 (341)
Q Consensus 283 v~~a~~k~~~ 292 (341)
|..++.+-..
T Consensus 168 Vn~ATarV~n 177 (376)
T KOG0125|consen 168 VNNATARVHN 177 (376)
T ss_pred Eeccchhhcc
Confidence 9999887544
No 52
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.9e-17 Score=119.69 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=77.7
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
..+++|||+||.+.++||.|.++|+ ++|+|..|.+-.|+.+..+.|||||+|.+.++|..|++.++|+.++.+.|+|.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs-~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFS-KCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHH-hccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3567999999999999999999998 999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 019392 286 ATP 288 (341)
Q Consensus 286 a~~ 288 (341)
.--
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 643
No 53
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.69 E-value=1.9e-15 Score=132.09 Aligned_cols=216 Identities=16% Similarity=0.253 Sum_probs=154.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
..-.++|+|+-+-++-|.|..+|++||.|..|.-.... ++ --|+|.|.+.+.|..|...|+|..|.+....+++++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn-n~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN-NG---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc-cc---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 44567999999999999999999999999887665433 21 358999999999999999999999977777777766
Q ss_pred ccccCCCC---------------------------------------------------------ccccC-CCceEEeCC
Q 019392 194 ATFSGSDR---------------------------------------------------------RTEAC-SDLSIFVGD 215 (341)
Q Consensus 194 ~~~~~~~~---------------------------------------------------------~~~~~-~~~~l~v~n 215 (341)
++...-.. +.... ..+.|.|.|
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 55110000 00000 146788888
Q ss_pred CCC-CCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCCCc
Q 019392 216 LAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGY 294 (341)
Q Consensus 216 lp~-~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~~~ 294 (341)
|.. .+|.+.|..+|+ .||+|.+|+|+.++.+ -|+|.|.|...|.-|++.|+|..+.|++|+|.+++...-.-.
T Consensus 305 ln~~~VT~d~LftlFg-vYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFG-VYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred CchhccchhHHHHHHh-hhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCC
Confidence 875 599999999997 9999999999987542 599999999999999999999999999999999887653221
Q ss_pred cccccchhhhcCCCCCCC----C-CCCCCCCCCCCCCCCeEEEcCCCCCCCC
Q 019392 295 QQQYSSQALVLAGGPGSN----G-ARVQGSQSDGESNNATIFVGALDSDVRC 341 (341)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 341 (341)
...-..+++. -+++.. . .+.........+++.+|+..|||.++|+
T Consensus 379 ~egq~d~glT--~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svse 428 (492)
T KOG1190|consen 379 REGQEDQGLT--KDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSE 428 (492)
T ss_pred CCCCcccccc--ccCCCCchhhccCcccccccccCCchhheeeccCCcccch
Confidence 1100011111 111111 0 0111111223467789999999998874
No 54
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.67 E-value=1.3e-15 Score=133.13 Aligned_cols=162 Identities=13% Similarity=0.257 Sum_probs=130.4
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 115 TKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 115 ~~~l~v~nLp~-~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
+..|.|.||.. .+|.+.|..+|..||.|.+|+|..++. .-|+|.|.+...|..|++.|+|..| .++.+++.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l--~gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKL--YGKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhccee--cCceEEEee
Confidence 68899999985 599999999999999999999998864 4799999999999999999999999 557777776
Q ss_pred ccccCCCCc------------------------------cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEe
Q 019392 194 ATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII 243 (341)
Q Consensus 194 ~~~~~~~~~------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~ 243 (341)
++...-.-. ....++.+|++.|+|.+++||+|++.|. .-|...+.....
T Consensus 370 SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~-~~g~~vkafkff 448 (492)
T KOG1190|consen 370 SKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQ-EPGGQVKAFKFF 448 (492)
T ss_pred ccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhh-cCCceEEeeeec
Confidence 663211100 1124456999999999999999999997 555544433322
Q ss_pred cCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecC-ccEEEEecCC
Q 019392 244 DSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-RPMRIDVATP 288 (341)
Q Consensus 244 ~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g-~~i~v~~a~~ 288 (341)
++.+-+|++.+++.|+|..|+..+|++.+++ ..|+|+|++.
T Consensus 449 ----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 ----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 2334599999999999999999999999985 5999999875
No 55
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.1e-15 Score=128.40 Aligned_cols=91 Identities=26% Similarity=0.523 Sum_probs=84.0
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
..+.+||||+-|+++++|.+|++.|. .||.|+.|+|+.|+.||+++|||||+|+++.+...|.+..+|..|+|+.|.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~-~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFE-KYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHH-hcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 46789999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCccc
Q 019392 285 VATPKKASGYQQ 296 (341)
Q Consensus 285 ~a~~k~~~~~~~ 296 (341)
+-.-.....+..
T Consensus 177 vERgRTvkgW~P 188 (335)
T KOG0113|consen 177 VERGRTVKGWLP 188 (335)
T ss_pred eccccccccccc
Confidence 977765555433
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=8.2e-16 Score=106.69 Aligned_cols=70 Identities=29% Similarity=0.665 Sum_probs=64.8
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
|||+|||+++++++|+++|+ .||.|..+++..++. +..+|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~-~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFS-RFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCT-TSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999996 999999999999976 89999999999999999999999999999999885
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=7.5e-16 Score=126.09 Aligned_cols=88 Identities=28% Similarity=0.445 Sum_probs=80.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 108 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
......+.++|.|.||+.+++|++|++||.+||.|..|.+.+|+.+|.+||||||.|.+.++|.+||+.|||.-+ ..+
T Consensus 182 ~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~L 259 (270)
T KOG0122|consen 182 DMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNL 259 (270)
T ss_pred ccccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceE
Confidence 334456889999999999999999999999999999999999999999999999999999999999999999887 678
Q ss_pred Cccccccccc
Q 019392 188 PFRLNWATFS 197 (341)
Q Consensus 188 ~~~~~~~~~~ 197 (341)
.+++.|+++.
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 8999998753
No 58
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=9.4e-17 Score=125.44 Aligned_cols=86 Identities=26% Similarity=0.487 Sum_probs=79.6
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
..+.-|||+|||+++||.||.-+|+ .||+|.+|.+++|+.||+++||||+.|+|..+..-|+..|||..|.||.|+|..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFS-qyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFS-QYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEee-ccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 3556899999999999999999998 999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCC
Q 019392 286 ATPKKAS 292 (341)
Q Consensus 286 a~~k~~~ 292 (341)
...-+.+
T Consensus 112 v~~Yk~p 118 (219)
T KOG0126|consen 112 VSNYKKP 118 (219)
T ss_pred cccccCC
Confidence 6554444
No 59
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=8.5e-16 Score=119.57 Aligned_cols=79 Identities=24% Similarity=0.491 Sum_probs=73.1
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
-.++|||+||+..+++.||..+|. .||.|.+|+|... +.|||||+|++..||+.|+..|+|+.|.|..|+|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~-~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFS-KYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHH-hcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 467999999999999999999997 9999999999875 4589999999999999999999999999999999998
Q ss_pred CCCCC
Q 019392 287 TPKKA 291 (341)
Q Consensus 287 ~~k~~ 291 (341)
+-...
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 77654
No 60
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.63 E-value=4.4e-15 Score=131.48 Aligned_cols=153 Identities=23% Similarity=0.357 Sum_probs=119.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
.++|||+|||+++|+++|+++|..||.|..+.+..++.++.++|||||+|.+.++|..|+..+++..| .++.+.+.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999 6666666664
Q ss_pred c----ccCCCC---------------ccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEE
Q 019392 195 T----FSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255 (341)
Q Consensus 195 ~----~~~~~~---------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~af 255 (341)
. ...... .........+++.+++..++..++...|. .+|.+..+.+...........+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK-SRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcc-ccccceeeeccCCCCCcccccccc
Confidence 2 111111 12224456899999999999999999996 999997777766544333444444
Q ss_pred EEeCCHHHHHHHHHH
Q 019392 256 VRFGDENERSRAMTE 270 (341)
Q Consensus 256 V~F~~~~~A~~Al~~ 270 (341)
+.+.....+...+..
T Consensus 272 ~~~~~~~~~~~~~~~ 286 (306)
T COG0724 272 VGNEASKDALESNSR 286 (306)
T ss_pred cchhHHHhhhhhhcc
Confidence 555444444444433
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=9e-15 Score=126.09 Aligned_cols=172 Identities=17% Similarity=0.288 Sum_probs=130.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
..-.+|||..+..+.+|+||+..|+.||+|+.|.+-+++..+..|||+||+|.+..+-..|+..+|-..++ +..+++.
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG--GQyLRVG 285 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG--GQYLRVG 285 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc--cceEecc
Confidence 34568999999999999999999999999999999999988899999999999999999999888866663 3333321
Q ss_pred ccccc---------------------------------------------------------------------------
Q 019392 193 WATFS--------------------------------------------------------------------------- 197 (341)
Q Consensus 193 ~~~~~--------------------------------------------------------------------------- 197 (341)
..-..
T Consensus 286 k~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi 365 (544)
T KOG0124|consen 286 KCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVI 365 (544)
T ss_pred cccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCcee
Confidence 11100
Q ss_pred -----------------------------------CCCCc-----------------------------------cccCC
Q 019392 198 -----------------------------------GSDRR-----------------------------------TEACS 207 (341)
Q Consensus 198 -----------------------------------~~~~~-----------------------------------~~~~~ 207 (341)
...+. .....
T Consensus 366 ~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~ 445 (544)
T KOG0124|consen 366 TGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQE 445 (544)
T ss_pred ccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhcccc
Confidence 00000 00123
Q ss_pred CceEEeCCC--CCCCCH---HHHHHHhcccCCCeeEEEEEecCCCCCC----ccEEEEEeCCHHHHHHHHHHhCCeeecC
Q 019392 208 DLSIFVGDL--APDVTD---SILQETFSSKYPSVKGAKVIIDSNTGRT----KGYGFVRFGDENERSRAMTEMNGVYCSS 278 (341)
Q Consensus 208 ~~~l~v~nl--p~~~t~---~~l~~~F~e~~G~v~~v~i~~~~~~~~~----~g~afV~F~~~~~A~~Al~~l~~~~i~g 278 (341)
++.+.++|. |.+++| .+|++.+. +||.|.+|.|...+.++.. ----||+|....++.+|+..|+|+.|+|
T Consensus 446 S~VivLRNMV~P~DiDe~LegEi~EECg-KfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgG 524 (544)
T KOG0124|consen 446 STVIVLRNMVDPKDIDEDLEGEITEECG-KFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGG 524 (544)
T ss_pred CcEEEEeccCChhhhhhHHHHHHHHHHh-cccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecC
Confidence 456777776 445544 68899997 9999999998877654411 1237999999999999999999999999
Q ss_pred ccEEEEecC
Q 019392 279 RPMRIDVAT 287 (341)
Q Consensus 279 ~~i~v~~a~ 287 (341)
|++..+...
T Consensus 525 r~VvAE~YD 533 (544)
T KOG0124|consen 525 RKVVAEVYD 533 (544)
T ss_pred ceeehhhhh
Confidence 999876543
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=1.9e-15 Score=127.58 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=71.7
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecC
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~ 287 (341)
.++|||+||++.+++++|+++|+ .||.|++|+|++|+. .+|||||+|++.++|+.|| .|||..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS-~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFS-FSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 46899999999999999999997 999999999998853 5789999999999999999 699999999999999987
Q ss_pred CCC
Q 019392 288 PKK 290 (341)
Q Consensus 288 ~k~ 290 (341)
.-.
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 543
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.62 E-value=1.2e-15 Score=121.71 Aligned_cols=86 Identities=26% Similarity=0.414 Sum_probs=79.6
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
...-..|.|-||-+-++.++|+.+| |+||.|-+|.|+.|+.|+.++|||||.|.+..+|+.|++.|+|..++|+.|+|.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvF-ekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVF-EKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHH-HHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3345689999999999999999999 599999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 019392 285 VATPKKA 291 (341)
Q Consensus 285 ~a~~k~~ 291 (341)
+++-...
T Consensus 89 ~arygr~ 95 (256)
T KOG4207|consen 89 MARYGRP 95 (256)
T ss_pred hhhcCCC
Confidence 8776544
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.62 E-value=1.6e-14 Score=127.31 Aligned_cols=73 Identities=27% Similarity=0.420 Sum_probs=67.1
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
.++|||+|||.++|+..|++.|. .||.|..+.|+ +.|+++| .|.|.++++|++|+..|+|..++||.|+|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfr-e~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFR-EIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHH-hccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 45899999999999999999997 99999999984 4578886 89999999999999999999999999999873
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=2.1e-15 Score=123.07 Aligned_cols=83 Identities=28% Similarity=0.472 Sum_probs=70.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.+..-++||||+|+|++..++|+++|++||+|++..|+.|+.+|++|||+||+|+|.++|.+|++.-+ -.|+ +|...
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piId--GR~aN 84 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIID--GRKAN 84 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccc--ccccc
Confidence 45566789999999999999999999999999999999999999999999999999999999997543 3453 44455
Q ss_pred cccccc
Q 019392 191 LNWATF 196 (341)
Q Consensus 191 ~~~~~~ 196 (341)
|+.+..
T Consensus 85 cnlA~l 90 (247)
T KOG0149|consen 85 CNLASL 90 (247)
T ss_pred cchhhh
Confidence 555443
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.61 E-value=8e-16 Score=128.83 Aligned_cols=89 Identities=20% Similarity=0.489 Sum_probs=82.2
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
.+|||+|||.++++.+|+.+| |+||+|.+|.|+++ ||||..++...|+.||..|||.+|.|..|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLF-EQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHH-HhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 379999999999999999999 59999999999986 999999999999999999999999999999999888
Q ss_pred CCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 289 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
|.+ .+++|+|+||.+..|
T Consensus 74 Ksk----------------------------------~stkl~vgNis~tct 91 (346)
T KOG0109|consen 74 KSK----------------------------------ASTKLHVGNISPTCT 91 (346)
T ss_pred cCC----------------------------------CccccccCCCCcccc
Confidence 743 367899999998876
No 67
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.6e-15 Score=111.80 Aligned_cols=82 Identities=28% Similarity=0.565 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
...++|||||||+..++||.|.+||+++|+|..|.+-.|+.+...-|||||+|.+.++|+.|++.+++..+ ..++|++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir~ 110 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIRI 110 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--cccceee
Confidence 46789999999999999999999999999999999999998889999999999999999999999999999 6778888
Q ss_pred cccc
Q 019392 192 NWAT 195 (341)
Q Consensus 192 ~~~~ 195 (341)
.|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 7765
No 68
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=4.2e-15 Score=136.47 Aligned_cols=178 Identities=16% Similarity=0.309 Sum_probs=133.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
........+||++||..++++.+++++..||++....++.|..+|.++||||.+|.+......|+..|||+.+.+....+
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999985444333
Q ss_pred ccccccccCCCC-----------------ccccCCCceEEeCCCC--CCC-CH-------HHHHHHhcccCCCeeEEEEE
Q 019392 190 RLNWATFSGSDR-----------------RTEACSDLSIFVGDLA--PDV-TD-------SILQETFSSKYPSVKGAKVI 242 (341)
Q Consensus 190 ~~~~~~~~~~~~-----------------~~~~~~~~~l~v~nlp--~~~-t~-------~~l~~~F~e~~G~v~~v~i~ 242 (341)
............ .....++..|.+.|+= .++ .+ |+++..++ +||.|.+|.|.
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~-k~g~v~~v~ip 442 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECA-KFGAVRSVEIP 442 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhc-ccCceeEEecC
Confidence 322111110000 0111223334443331 111 11 55677787 99999999998
Q ss_pred ecCC---CCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 243 IDSN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 243 ~~~~---~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
++.. ..-..|-.||+|.+.++|++|+.+|+|.++.+|.|...|...
T Consensus 443 r~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 443 RPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 8722 223457789999999999999999999999999999988654
No 69
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=6.3e-15 Score=115.59 Aligned_cols=80 Identities=19% Similarity=0.391 Sum_probs=72.0
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
.+++|||+|||.++.+.+|.++|. +||.|..|.|... .....||||+|++..+|+.||..-+|..++|+.|+|+|+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFy-Kyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFY-KYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHh-hhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 567999999999999999999997 9999999987643 234579999999999999999999999999999999998
Q ss_pred CCCC
Q 019392 287 TPKK 290 (341)
Q Consensus 287 ~~k~ 290 (341)
..-.
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 8765
No 70
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=4.6e-15 Score=102.81 Aligned_cols=66 Identities=38% Similarity=0.659 Sum_probs=62.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCC
Q 019392 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (341)
Q Consensus 118 l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~ 184 (341)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|..|++.++|..+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999998 578899999999999999999999999998843
No 71
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-15 Score=122.81 Aligned_cols=87 Identities=26% Similarity=0.574 Sum_probs=82.5
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
...++|||++|-.+++|.-|...|- .||.|.+|.++.|..+.++||||||+|.-.|||..||+.||+.++.||.|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFI-PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFI-PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccc-cccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3567999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 019392 286 ATPKKASG 293 (341)
Q Consensus 286 a~~k~~~~ 293 (341)
++|.+...
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99987554
No 72
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=5e-15 Score=110.11 Aligned_cols=88 Identities=23% Similarity=0.402 Sum_probs=82.1
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
+.....|||.++....+|++|.+.|. .||+|++|.+..|+.||..||||+|+|++.++|.+|+..+||..|.|..|.|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~-dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFA-DYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHh-hcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 44567899999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
|+-.+...+
T Consensus 148 w~Fv~gp~~ 156 (170)
T KOG0130|consen 148 WCFVKGPER 156 (170)
T ss_pred EEEecCCcc
Confidence 987776543
No 73
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.58 E-value=4e-13 Score=116.37 Aligned_cols=172 Identities=17% Similarity=0.156 Sum_probs=132.9
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 110 FTNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
......+.++|.+|.. .++-+.|.++|..||.|+.|++++.+. |.|.|++-|..+.++|+..||+..+ .+..
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~l--fG~k 354 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPL--FGGK 354 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCcc--ccce
Confidence 4556788999999995 588899999999999999999999874 7899999999999999999999988 4444
Q ss_pred cccccccccC----------------------CC----------CccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCe
Q 019392 189 FRLNWATFSG----------------------SD----------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236 (341)
Q Consensus 189 ~~~~~~~~~~----------------------~~----------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v 236 (341)
+.+..++... .. +..-..++++|+.-|.|..+||+.|.++|.++--..
T Consensus 355 l~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~ 434 (494)
T KOG1456|consen 355 LNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPP 434 (494)
T ss_pred EEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCc
Confidence 4443333100 00 001124677899999999999999999997544446
Q ss_pred eEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCc------cEEEEecCCCC
Q 019392 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR------PMRIDVATPKK 290 (341)
Q Consensus 237 ~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~------~i~v~~a~~k~ 290 (341)
.+|+|+.-+ +.++. -+.+||++.++|.+||..||...|.+. .|++.|++++.
T Consensus 435 ~svkvFp~k-serSs-sGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 435 TSVKVFPLK-SERSS-SGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred ceEEeeccc-ccccc-cceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccccc
Confidence 677777654 34443 589999999999999999999888653 46777776653
No 74
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.57 E-value=1.4e-13 Score=119.12 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=129.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
.....+..|+|++|...++|.||.+.++.||+|.-+..+..+ ..|.|+|++.+.|+.++.......+...+...
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchh
Confidence 345677789999999999999999999999999888776654 57999999999999999765554444445544
Q ss_pred ccccccccCCCCc--cccCCCceEEe--CCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHH
Q 019392 190 RLNWATFSGSDRR--TEACSDLSIFV--GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265 (341)
Q Consensus 190 ~~~~~~~~~~~~~--~~~~~~~~l~v--~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~ 265 (341)
-++++....-.+. ....+...|.+ -|--+.+|.+-|..++. ..|.|.+|.|++. +|. -|+|||++.+.|.
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icn-p~GkVlRIvIfkk--ngV---QAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICN-PQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQ 173 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcC-CCCceEEEEEEec--cce---eeEEeechhHHHH
Confidence 4555533222222 11223334444 35557899999999997 9999999998875 443 5999999999999
Q ss_pred HHHHHhCCeeec--CccEEEEecCCCC
Q 019392 266 RAMTEMNGVYCS--SRPMRIDVATPKK 290 (341)
Q Consensus 266 ~Al~~l~~~~i~--g~~i~v~~a~~k~ 290 (341)
+|...|||..|. -++|+|+||++.+
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcce
Confidence 999999998885 5789999999874
No 75
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=132.75 Aligned_cols=84 Identities=31% Similarity=0.577 Sum_probs=80.3
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
+.+||||||++++|++|.++|+ ..|.|.+++++.|+.||++|||||++|.+.++|..|++.|||.++.||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~-~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFS-GVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHh-ccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999997 999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCC
Q 019392 289 KKASG 293 (341)
Q Consensus 289 k~~~~ 293 (341)
.+.+.
T Consensus 98 ~~~~~ 102 (435)
T KOG0108|consen 98 RKNAE 102 (435)
T ss_pred cchhH
Confidence 76543
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=3.3e-14 Score=100.91 Aligned_cols=82 Identities=17% Similarity=0.329 Sum_probs=74.1
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
..-.+.|||+|||+++|.|++.++|. +||.|..|+|-.++ ..+|-|||.|++..+|++|++.|+|..+.++.|.|-
T Consensus 15 pevnriLyirNLp~~ITseemydlFG-kyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFG-KYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhh-cccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 34567899999999999999999997 99999999998654 458999999999999999999999999999999999
Q ss_pred ecCCCC
Q 019392 285 VATPKK 290 (341)
Q Consensus 285 ~a~~k~ 290 (341)
+-.+.+
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 877654
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=1.8e-14 Score=128.77 Aligned_cols=79 Identities=19% Similarity=0.393 Sum_probs=73.1
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCH--HHHHHHHHHhCCeeecCccEEEE
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE--NERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~--~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
...+||||||.+.+++++|+.+|. .||.|.+|.|++ .+| ||||||+|.+. .++.+||..|||.++.|+.|+|.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFS-eFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFS-PMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 456899999999999999999997 999999999994 567 89999999987 78999999999999999999999
Q ss_pred ecCCCC
Q 019392 285 VATPKK 290 (341)
Q Consensus 285 ~a~~k~ 290 (341)
.|++.-
T Consensus 84 KAKP~Y 89 (759)
T PLN03213 84 KAKEHY 89 (759)
T ss_pred eccHHH
Confidence 998874
No 78
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.54 E-value=1.5e-13 Score=121.66 Aligned_cols=123 Identities=28% Similarity=0.492 Sum_probs=94.7
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecC
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~ 287 (341)
.++|||+|||+++++++|+++|. .||.|..|.+..|+.+++++|||||+|.+.++|..|+..+++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~-~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFK-KFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHH-hcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 68999999999999999999996 99999999999998899999999999999999999999999999999999999976
Q ss_pred C-CCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 288 P-KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 288 ~-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
. .......... .....................++++++++..++
T Consensus 194 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (306)
T COG0724 194 PASQPRSELSNN---------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTA 238 (306)
T ss_pred cccccccccccc---------cchhhhccccccccccccccceeeccccccccc
Confidence 4 1111100000 000000111222344556778899999988765
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=5e-14 Score=120.04 Aligned_cols=90 Identities=22% Similarity=0.404 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......++|+|+|||+..-|-||+.+|++||+|.+|.|+.+. .-||||+||+|++.++|++|..+|||..+ .+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~V--EGRkI 166 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVV--EGRKI 166 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhccee--eceEE
Confidence 345667889999999999999999999999999999999874 45899999999999999999999999999 66777
Q ss_pred ccccccccCCCCcc
Q 019392 190 RLNWATFSGSDRRT 203 (341)
Q Consensus 190 ~~~~~~~~~~~~~~ 203 (341)
+|+.+...-...+.
T Consensus 167 EVn~ATarV~n~K~ 180 (376)
T KOG0125|consen 167 EVNNATARVHNKKK 180 (376)
T ss_pred EEeccchhhccCCc
Confidence 77766654433333
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=5.6e-14 Score=97.35 Aligned_cols=72 Identities=39% Similarity=0.814 Sum_probs=67.2
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
+|||+|||..+++++|+++|. .||.|.++.+..+. +.++|+|||+|.+.++|.+|++.+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~-~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFS-KFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHH-hcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999996 99999999999875 7788999999999999999999999999999999874
No 81
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=4.6e-14 Score=117.34 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=70.1
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
...+|||+||++.+|+++|+++|+ .||.|.+|+|++|. +.+|||||+|++.++|+.|+ .|+|..|.++.|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS-~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFS-HCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHH-hcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 356899999999999999999997 99999999999884 45689999999999999999 99999999999999875
Q ss_pred CC
Q 019392 287 TP 288 (341)
Q Consensus 287 ~~ 288 (341)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 82
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=5.8e-14 Score=96.91 Aligned_cols=71 Identities=37% Similarity=0.780 Sum_probs=67.0
Q ss_pred eCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 213 VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 213 v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
|+|||..+++++|+++|. .||.|..+.+..++.+++++|+|||+|.+.++|.+|++.+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFS-KFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHH-hhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 679999999999999996 99999999999988789999999999999999999999999999999999874
No 83
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.3e-13 Score=121.99 Aligned_cols=159 Identities=19% Similarity=0.290 Sum_probs=116.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecC-CCC--Cccc---eEEEEecCHHHHHHHHHHhCCC---
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-QTG--QSEG---YGFVEFYSRAAAEKVLQSYSGS--- 180 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~-~~g--~~~g---~afV~f~~~~~A~~Al~~l~~~--- 180 (341)
....-++.||||+||++++|+.|...|..||.+ .+...... ..+ ..+| |+|+-|+++..+..-|......
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGN 332 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccc
Confidence 445667889999999999999999999999976 33333211 111 2456 9999999999988877654321
Q ss_pred -CCC-----CCCCCcccccc-----cccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCC
Q 019392 181 -LMP-----NTDQPFRLNWA-----TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR 249 (341)
Q Consensus 181 -~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~ 249 (341)
.|. .+.+.+.+... .+. .......++.+|||||+||.-++.++|..+|...||.|..+-|-+|.+-+.
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv-~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFV-LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhh-hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 110 01111221111 011 112233467889999999999999999999966999999999999988899
Q ss_pred CccEEEEEeCCHHHHHHHHHH
Q 019392 250 TKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 250 ~~g~afV~F~~~~~A~~Al~~ 270 (341)
+||-|-|+|.+..+-.+||..
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 999999999999999999954
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.52 E-value=2.6e-14 Score=125.25 Aligned_cols=107 Identities=25% Similarity=0.420 Sum_probs=93.4
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||++|.+++++|.|+++|. .||+|.+|.+++|+.+++++||+||+|++.+...++| ....+.|+|+.|.+..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~-~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFS-QFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhc-ccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceec
Confidence 567999999999999999999996 9999999999999999999999999999999999998 55568899999999999
Q ss_pred CCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCC
Q 019392 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVRC 341 (341)
Q Consensus 287 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 341 (341)
.++...... ......++|||++||.++|.
T Consensus 83 v~r~~~~~~--------------------------~~~~~tkkiFvGG~~~~~~e 111 (311)
T KOG4205|consen 83 VSREDQTKV--------------------------GRHLRTKKIFVGGLPPDTTE 111 (311)
T ss_pred cCccccccc--------------------------ccccceeEEEecCcCCCCch
Confidence 988755311 11225789999999999874
No 85
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=3.8e-14 Score=98.27 Aligned_cols=66 Identities=38% Similarity=0.591 Sum_probs=60.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCC
Q 019392 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (341)
Q Consensus 118 l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~ 184 (341)
|||+|||+++++++|+++|+.||.|..+++..++. +..+++|||+|.+.++|.+|++.+++..+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999999986 8999999999999999999999998888843
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=8.8e-14 Score=117.60 Aligned_cols=75 Identities=21% Similarity=0.318 Sum_probs=68.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
.++|||+||++.+|+++|+++|+.||.|.+|+|+.++. .+|||||+|++.++|+.||. |+|..| .++.++|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l--~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATI--VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCee--CCceEEEEec
Confidence 57999999999999999999999999999999998863 46899999999999999995 999999 6777888776
Q ss_pred c
Q 019392 195 T 195 (341)
Q Consensus 195 ~ 195 (341)
.
T Consensus 78 ~ 78 (260)
T PLN03120 78 E 78 (260)
T ss_pred c
Confidence 5
No 87
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.7e-13 Score=115.48 Aligned_cols=89 Identities=21% Similarity=0.371 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCC
Q 019392 103 QNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (341)
Q Consensus 103 ~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (341)
.+........++-+||||+-|+++++|.+|+..|+.||+|+.|+|++|+.+|+++|||||+|+++.+...|.+..+|..|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 34445555668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccc
Q 019392 183 PNTDQPFRL 191 (341)
Q Consensus 183 ~~~~~~~~~ 191 (341)
++....|-+
T Consensus 169 dgrri~VDv 177 (335)
T KOG0113|consen 169 DGRRILVDV 177 (335)
T ss_pred cCcEEEEEe
Confidence 554444433
No 88
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.1e-13 Score=107.82 Aligned_cols=77 Identities=26% Similarity=0.403 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...+.||||||+..+++.||...|..||+|.+|+|-..+. |||||+|+++.+|+.|+..|+|+.| .+..++|+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccc--cCceEEEE
Confidence 3578999999999999999999999999999999988653 8999999999999999999999999 66666666
Q ss_pred cccc
Q 019392 193 WATF 196 (341)
Q Consensus 193 ~~~~ 196 (341)
...-
T Consensus 81 ~S~G 84 (195)
T KOG0107|consen 81 LSTG 84 (195)
T ss_pred eecC
Confidence 6553
No 89
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.46 E-value=7.7e-14 Score=127.60 Aligned_cols=79 Identities=25% Similarity=0.562 Sum_probs=75.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (341)
+.|||||||++++|++|.++|+..|.|.+++++.|+.+|+.+||||++|.+.+.|..|++.|||..+ .++.+++.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 78888888877
Q ss_pred c
Q 019392 196 F 196 (341)
Q Consensus 196 ~ 196 (341)
.
T Consensus 97 ~ 97 (435)
T KOG0108|consen 97 N 97 (435)
T ss_pred c
Confidence 3
No 90
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=5e-13 Score=116.11 Aligned_cols=170 Identities=14% Similarity=0.165 Sum_probs=123.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc----CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~----G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.+.-.|.+++||+++++.++.+||..- |..+.|.+++.. +|+..|-|||.|..++.|..||.+ |...+ ..+-
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~i--GqRY 234 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNI--GQRY 234 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHH--hHHH
Confidence 455678899999999999999999632 345567666654 789999999999999999999965 22222 1222
Q ss_pred ccccccc----------------------c-c---CCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCC-eeE--E
Q 019392 189 FRLNWAT----------------------F-S---GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKG--A 239 (341)
Q Consensus 189 ~~~~~~~----------------------~-~---~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~-v~~--v 239 (341)
|.+-.+. . . ....-.......+|.+++||++.+.|+|.++|. .|-. |.- |
T Consensus 235 IElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg-dFa~~i~f~gV 313 (508)
T KOG1365|consen 235 IELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG-DFATDIRFQGV 313 (508)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH-HHhhhccccee
Confidence 2211111 0 0 000001122356899999999999999999996 6654 332 6
Q ss_pred EEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 240 KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 240 ~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
.+..+ ..|+..|-|||+|.+.++|..|....|++...+|.|+|--+..
T Consensus 314 Hmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 314 HMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred EEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 67776 4589999999999999999999999999888899999876543
No 91
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=1.1e-13 Score=110.54 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
+-+...+|.|-||.+-++.++|+.+|++||.|-+|.|.+|+.++.++|||||.|.+..+|+.|++.|+|.+| .++.++
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee--ccceee
Confidence 446778999999999999999999999999999999999999999999999999999999999999999999 556666
Q ss_pred cccccc
Q 019392 191 LNWATF 196 (341)
Q Consensus 191 ~~~~~~ 196 (341)
|.++..
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 655553
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=6.6e-13 Score=92.42 Aligned_cols=74 Identities=39% Similarity=0.809 Sum_probs=68.5
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
+|+|+|||..+++++|+++|. .||.|..+.+..+..+ ..+|+|||+|.+.++|..|++.+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~-~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFS-KFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHH-hcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999996 9999999999988654 7789999999999999999999999999999999875
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=5.3e-15 Score=115.71 Aligned_cols=86 Identities=22% Similarity=0.422 Sum_probs=78.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 108 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
.-....++.-|||||||++.||.||.-.|+.||+|++|.+++|+.||+|+||||+.|++..+...|+..|||..| .++
T Consensus 28 WH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gR 105 (219)
T KOG0126|consen 28 WHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGR 105 (219)
T ss_pred hhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cce
Confidence 334557788899999999999999999999999999999999999999999999999999999999999999999 777
Q ss_pred Cccccccc
Q 019392 188 PFRLNWAT 195 (341)
Q Consensus 188 ~~~~~~~~ 195 (341)
.|+|....
T Consensus 106 tirVDHv~ 113 (219)
T KOG0126|consen 106 TIRVDHVS 113 (219)
T ss_pred eEEeeecc
Confidence 78776443
No 94
>smart00361 RRM_1 RNA recognition motif.
Probab=99.45 E-value=4.5e-13 Score=92.60 Aligned_cols=62 Identities=23% Similarity=0.496 Sum_probs=55.0
Q ss_pred HHHHHHHhcc----cCCCeeEEE-EEecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 222 DSILQETFSS----KYPSVKGAK-VIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 222 ~~~l~~~F~e----~~G~v~~v~-i~~~~~~--~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
+++|+++| . .||.|.+|. |..++.+ +.++|||||+|.+.++|.+|++.|||..++|+.|+++
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 46777777 4 899999995 7777766 8999999999999999999999999999999999874
No 95
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.44 E-value=6.1e-14 Score=115.56 Aligned_cols=171 Identities=32% Similarity=0.440 Sum_probs=133.4
Q ss_pred CeEEEcCCCCCCCHHH-H--HHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 116 KTIWIGDLFHWMDETF-L--HNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~-l--~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
-..+++++-..+..+- | ...|+.+-.+...+++++. -+..++++|+.|+....-.++-..-+++.+ ...++++.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~a 173 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRLA 173 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc--cCcceeec
Confidence 3456666666655554 3 5667777777777777775 467789999999998887777766666666 44445543
Q ss_pred cccccC-CCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 019392 193 WATFSG-SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (341)
Q Consensus 193 ~~~~~~-~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l 271 (341)
....-. .....+...+.+||.+.|..+++++.|...|+ +|......++++|+.||+++||+||.|.+..|+..|++.|
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~-Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFK-KFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHHH-hccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 322211 11223455677999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred CCeeecCccEEEEecCCCC
Q 019392 272 NGVYCSSRPMRIDVATPKK 290 (341)
Q Consensus 272 ~~~~i~g~~i~v~~a~~k~ 290 (341)
+|+.++.|.|+++-+.-+.
T Consensus 253 ~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccccchhHhhhhhHHh
Confidence 9999999999998766654
No 96
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.44 E-value=1.1e-12 Score=107.00 Aligned_cols=83 Identities=20% Similarity=0.389 Sum_probs=75.5
Q ss_pred CCceEEeCCCCCCCCHHHHHH----HhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 207 SDLSIFVGDLAPDVTDSILQE----TFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~----~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
+..||||.||+..+..++|++ +|+ .||.|.+|...+ +.+.||-|||.|++.+.|-.|++.|+|+.+.|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFs-qfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFS-QFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHH-hhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 344999999999999999998 997 999999998874 678999999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 019392 283 IDVATPKKASG 293 (341)
Q Consensus 283 v~~a~~k~~~~ 293 (341)
|.||..+.+.-
T Consensus 84 iqyA~s~sdii 94 (221)
T KOG4206|consen 84 IQYAKSDSDII 94 (221)
T ss_pred eecccCccchh
Confidence 99999886443
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=6.2e-13 Score=110.65 Aligned_cols=75 Identities=24% Similarity=0.264 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
...+|||+||++.+|+++|++||+.||+|.+|+|++|. +.++||||+|+++++|+.|+ .|+|..| .++.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l--~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATI--VDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCee--CCceEEEEe
Confidence 55799999999999999999999999999999999984 44589999999999999999 6999999 555566654
Q ss_pred c
Q 019392 194 A 194 (341)
Q Consensus 194 ~ 194 (341)
.
T Consensus 78 ~ 78 (243)
T PLN03121 78 W 78 (243)
T ss_pred C
Confidence 3
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.41 E-value=1.1e-12 Score=86.55 Aligned_cols=56 Identities=30% Similarity=0.629 Sum_probs=50.5
Q ss_pred HHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 225 l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
|+++|+ +||+|.+|.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|+||
T Consensus 1 L~~~f~-~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFS-KFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHT-TTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhC-CcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 688996 99999999987653 579999999999999999999999999999999986
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=7.2e-13 Score=121.91 Aligned_cols=173 Identities=20% Similarity=0.356 Sum_probs=136.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhc-----------C-CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT-----------G-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~-----------G-~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 178 (341)
.....+.++|++++..++++.+-.+|..- | .+..+.+...+ .|||++|.+.+.|..|+. ++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~-~~ 243 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMA-LD 243 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhc-cc
Confidence 44567789999999999999999998753 2 36666666655 799999999999999984 67
Q ss_pred CCCCCCCCCCccccccc----------------ccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEE
Q 019392 179 GSLMPNTDQPFRLNWAT----------------FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVI 242 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~ 242 (341)
+..+.+....+...... ..........+...++||++||..++++.+++++. .||.+....++
T Consensus 244 ~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~-~fg~lk~f~lv 322 (500)
T KOG0120|consen 244 GIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLD-SFGPLKAFRLV 322 (500)
T ss_pred chhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHH-hcccchhheee
Confidence 76663322222111110 01111123334567899999999999999999995 99999999999
Q ss_pred ecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCC
Q 019392 243 IDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (341)
Q Consensus 243 ~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~ 291 (341)
+|..+|-++||||.+|.+......|+..|||..++++.|.|..+-....
T Consensus 323 ~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 323 KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 9999999999999999999999999999999999999999998876543
No 100
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.7e-12 Score=92.29 Aligned_cols=82 Identities=15% Similarity=0.264 Sum_probs=70.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
..+++.++.|||+|||+++|.+++.++|.+||.|..|+|-..+. .+|.|||.|++..+|.+|++.|+|..+ .++.
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ry 86 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNV--DNRY 86 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhccccc--CCce
Confidence 34567889999999999999999999999999999999977654 469999999999999999999999888 5566
Q ss_pred ccccccc
Q 019392 189 FRLNWAT 195 (341)
Q Consensus 189 ~~~~~~~ 195 (341)
+.+-+..
T Consensus 87 l~vlyyq 93 (124)
T KOG0114|consen 87 LVVLYYQ 93 (124)
T ss_pred EEEEecC
Confidence 6554443
No 101
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.2e-12 Score=117.42 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCH--HHHHHHHHHhCCCCCCCCCCCcc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR--AAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~--~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
....+||||||++.+++++|+.+|..||.|.+|.|++ .+| ||||||+|.+. .++.+||+.|||..| .++.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LK 81 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLR 81 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCee--cCceeE
Confidence 4557899999999999999999999999999999994 466 89999999987 789999999999999 667777
Q ss_pred ccccc
Q 019392 191 LNWAT 195 (341)
Q Consensus 191 ~~~~~ 195 (341)
|..++
T Consensus 82 VNKAK 86 (759)
T PLN03213 82 LEKAK 86 (759)
T ss_pred Eeecc
Confidence 76555
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1.4e-12 Score=97.22 Aligned_cols=86 Identities=21% Similarity=0.431 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.+-+.-.|||.++...+||++|.+.|..||+|++|.+..|+.+|-.||||+|+|++.+.|..|+..+||..| .+..+.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~ 145 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVS 145 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCcee
Confidence 345666799999999999999999999999999999999999999999999999999999999999999998 778888
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|...+.
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 88876543
No 103
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=2.8e-12 Score=88.64 Aligned_cols=65 Identities=34% Similarity=0.589 Sum_probs=60.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 117 ~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
+|+|+|||..+++++|+++|..||.|..+.+..++ +.++++|||+|.+.++|..|++.+++..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 58999999999999999999999999999999876 778899999999999999999999988873
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.37 E-value=1.1e-12 Score=114.70 Aligned_cols=178 Identities=21% Similarity=0.311 Sum_probs=141.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...+++|++++.+.+.+.++..++..+|.+..+.+........+++++++.|...+.+..||.......+.+.....-+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999999999999998888888887778899999999999999999999744333443333222222
Q ss_pred cccc---cCCCCccccCCCceEE-eCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 019392 193 WATF---SGSDRRTEACSDLSIF-VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (341)
Q Consensus 193 ~~~~---~~~~~~~~~~~~~~l~-v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al 268 (341)
.... .....+.......++| |++|+..+++++|+++|. .+|.|..+++..+..++..+|||||.|.+..++..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~-~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFV-SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhcc-CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 2221 1111112222333444 999999999999999996 9999999999999999999999999999999999999
Q ss_pred HHhCCeeecCccEEEEecCCCCCC
Q 019392 269 TEMNGVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 269 ~~l~~~~i~g~~i~v~~a~~k~~~ 292 (341)
.. ....+.++.+.+.+..+....
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-ccCcccCcccccccCCCCccc
Confidence 77 889999999999998877544
No 105
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.9e-13 Score=110.27 Aligned_cols=141 Identities=21% Similarity=0.386 Sum_probs=120.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
.+..+||||+|+...++|+-|.++|-.-|+|..+.|..++ .++.| ||||.|+++-....|+..+||..+ .+.++.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l--~~~e~q~ 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDL--EEDEEQR 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchh--ccchhhc
Confidence 4678999999999999999999999999999999998887 56666 999999999999999999999888 3444333
Q ss_pred ccccccCCCCccccCCCceEEeCC----CCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHH
Q 019392 192 NWATFSGSDRRTEACSDLSIFVGD----LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~n----lp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A 267 (341)
+++.|+ |...++++.+.+.|+ .-|.++.+++.++.+ |+.+-++|+.+....+.-.+
T Consensus 82 ------------------~~r~G~shapld~r~~~ei~~~v~s-~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 82 ------------------TLRCGNSHAPLDERVTEEILYEVFS-QAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred ------------------ccccCCCcchhhhhcchhhheeeec-ccCCCCCcccccccc-CCccCccchhhhhhhcCcHH
Confidence 455566 777899999999998 999999999999854 88999999999988888888
Q ss_pred HHHhCCeee
Q 019392 268 MTEMNGVYC 276 (341)
Q Consensus 268 l~~l~~~~i 276 (341)
+....+...
T Consensus 142 ~~~y~~l~~ 150 (267)
T KOG4454|consen 142 LDLYQGLEL 150 (267)
T ss_pred hhhhcccCc
Confidence 877666443
No 106
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-12 Score=113.02 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=80.2
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
..+.+.|||..|.+-+++++|.-+|+ .||.|.+|.|++|+.||.+..||||+|++.++|++|.=.|++..|+.++|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFS-rFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFS-RFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHh-hcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 35678999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 019392 285 VATPKK 290 (341)
Q Consensus 285 ~a~~k~ 290 (341)
|+.+-.
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 976543
No 107
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.2e-12 Score=87.44 Aligned_cols=64 Identities=38% Similarity=0.629 Sum_probs=60.4
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 120 IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 120 v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
|+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|..|++.+++..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999999999999999998878899999999999999999999999988883
No 108
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.9e-13 Score=107.85 Aligned_cols=83 Identities=23% Similarity=0.454 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...+|||||+|..++||.-|...|-+||.|.+|.+..|-.+++.|||+||+|...|+|..||..||+..| .++.|+|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred ccccc
Q 019392 193 WATFS 197 (341)
Q Consensus 193 ~~~~~ 197 (341)
++.+.
T Consensus 86 ~AkP~ 90 (298)
T KOG0111|consen 86 LAKPE 90 (298)
T ss_pred ecCCc
Confidence 88754
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=2.6e-11 Score=84.21 Aligned_cols=72 Identities=36% Similarity=0.646 Sum_probs=63.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 117 ~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
+|+|+|||..+++++|+++|..+|.|..+.+..++.. ..+++|||+|.+.++|..|++.+++..+ .++.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~--~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL--GGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 5899999999999999999999999999999988744 6789999999999999999999999887 4444443
No 110
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.23 E-value=3.4e-11 Score=96.76 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=77.0
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccC-CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~-G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
......++|..+|..+.+.+|..+|. .| |.|.++++-+++.||.+||||||+|++.+.|.-|-+.||+..+.++-|.|
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~-q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFR-QFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhh-hcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 44556799999999999999999998 56 88888999899999999999999999999999999999999999999999
Q ss_pred EecCCC
Q 019392 284 DVATPK 289 (341)
Q Consensus 284 ~~a~~k 289 (341)
.+--+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 997765
No 111
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.23 E-value=6.7e-10 Score=100.17 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=118.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEE-EEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~-i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
...-+|.+++||+.||++||.+||+..-.|.+ |.++.+. .+++.|-|||.|++.+.|+.||... ...|. .+-|.|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rh-re~iG--hRYIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRH-RENIG--HRYIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHH-HHhhc--cceEEe
Confidence 46678999999999999999999998866655 4455554 6789999999999999999999542 22220 000000
Q ss_pred c-----------------------------------ccc-----------------------------------------
Q 019392 192 N-----------------------------------WAT----------------------------------------- 195 (341)
Q Consensus 192 ~-----------------------------------~~~----------------------------------------- 195 (341)
. +..
T Consensus 177 F~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~ 256 (510)
T KOG4211|consen 177 FRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRD 256 (510)
T ss_pred ehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccc
Confidence 0 000
Q ss_pred ---ccC-CCCc--------cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHH
Q 019392 196 ---FSG-SDRR--------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263 (341)
Q Consensus 196 ---~~~-~~~~--------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~ 263 (341)
... ...+ ........++.++||+..++.+|..+|+ ......|.|-.. .+|+..|-|+|+|.+.+|
T Consensus 257 ~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFs--pl~p~~v~i~ig-~dGr~TGEAdveF~t~ed 333 (510)
T KOG4211|consen 257 PNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFS--PLNPYRVHIEIG-PDGRATGEADVEFATGED 333 (510)
T ss_pred cccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcC--CCCceeEEEEeC-CCCccCCcceeecccchh
Confidence 000 0000 0001114678899999999999999996 444557777766 579999999999999999
Q ss_pred HHHHHHHhCCeeecCccEEEEec
Q 019392 264 RSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 264 A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
|..|+ .-++..+..+.|.+-..
T Consensus 334 av~Am-skd~anm~hrYVElFln 355 (510)
T KOG4211|consen 334 AVGAM-GKDGANMGHRYVELFLN 355 (510)
T ss_pred hHhhh-ccCCcccCcceeeeccc
Confidence 99999 66778888888887654
No 112
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=8.2e-13 Score=125.67 Aligned_cols=151 Identities=20% Similarity=0.279 Sum_probs=132.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
....++||+||+..+.+.+|...|..+|.+..+.+...+..++.+|+||++|.+.+++.+|+....+..++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 34567899999999999999999999998888877766678899999999999999999999765555442
Q ss_pred cccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
...|+|+|+|+..|.++|+.+|+ .+|.+.+++++..+ .|+++|.|||.|.+..++.++....+
T Consensus 736 ---------------K~~v~i~g~pf~gt~e~~k~l~~-~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 ---------------KISVAISGPPFQGTKEELKSLAS-KTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred ---------------hhhhheeCCCCCCchHHHHhhcc-ccCCccccchhhhh-ccccccceeccCCCcchhhhhcccch
Confidence 23699999999999999999997 99999999988874 59999999999999999999998888
Q ss_pred CeeecCccEEEEecCCC
Q 019392 273 GVYCSSRPMRIDVATPK 289 (341)
Q Consensus 273 ~~~i~g~~i~v~~a~~k 289 (341)
...+..+.+.|..+.+.
T Consensus 799 ~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 799 VAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhhhcCccccccCCc
Confidence 88888888888886663
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=1.4e-11 Score=117.99 Aligned_cols=165 Identities=21% Similarity=0.350 Sum_probs=136.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
.....++|||+|||+..+++.+|+..|..+|.|.+|.|..-+ -+.-..|+||.|.+...+-.|+-.+.+..|......+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 445688999999999999999999999999999999887653 3455579999999999999999999998885544433
Q ss_pred ccccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 019392 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (341)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~ 269 (341)
.+... .....+.+|+++|+.++....|...|. .||.|..|.+-. |. -||||.|++...|..|+.
T Consensus 446 glG~~---------kst~ttr~~sgglg~w~p~~~l~r~fd-~fGpir~Idy~h----gq--~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 446 GLGQP---------KSTPTTRLQSGGLGPWSPVSRLNREFD-RFGPIRIIDYRH----GQ--PYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccccc---------ccccceeeccCCCCCCChHHHHHHHhh-ccCcceeeeccc----CC--cceeeecccCccchhhHH
Confidence 33221 244667899999999999999999996 999999876532 33 399999999999999999
Q ss_pred HhCCeeecC--ccEEEEecCCCCC
Q 019392 270 EMNGVYCSS--RPMRIDVATPKKA 291 (341)
Q Consensus 270 ~l~~~~i~g--~~i~v~~a~~k~~ 291 (341)
.|.|..|++ +.|+|.|+..-..
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCC
Confidence 999999985 7899999877643
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.19 E-value=2.9e-11 Score=113.99 Aligned_cols=108 Identities=23% Similarity=0.382 Sum_probs=90.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
-++|||||.|+..++|.||..+|+.||+|.+|.++... +||||.+....+|++|+.+|+...+ ..+.|++.|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~W 491 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAW 491 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccc--cceeeEEee
Confidence 56899999999999999999999999999999998865 8999999999999999999998888 889999999
Q ss_pred ccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHh
Q 019392 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 229 (341)
+................|=|.-||++.-.++|+.++
T Consensus 492 a~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 492 AVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred eccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 986654443333444556777888875555576666
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=8.4e-11 Score=102.47 Aligned_cols=174 Identities=16% Similarity=0.144 Sum_probs=121.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...++..|..++|||..++.+|..+|...-...-.+.+.....|+..|.+.|.|.|.|.-+.|++. +...+ ..+.+.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~--g~ryie 132 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHM--GTRYIE 132 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhc--cCCcee
Confidence 345666788999999999999999998754333333344344677779999999999999999975 33333 334444
Q ss_pred cccccc-----------cCCCCccccCCCceEEeCCCCCCCCHHHHHHHhccc---CCCeeEEEEEecCCCCCCccEEEE
Q 019392 191 LNWATF-----------SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK---YPSVKGAKVIIDSNTGRTKGYGFV 256 (341)
Q Consensus 191 ~~~~~~-----------~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~---~G~v~~v~i~~~~~~~~~~g~afV 256 (341)
+-.+.. ..............|.+++||+++++.++.++|... -|..+.|.+++. .+|+..|-|||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFv 211 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFV 211 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEE
Confidence 322221 111111122334578889999999999999999411 234566666654 46999999999
Q ss_pred EeCCHHHHHHHHHHhCCeeecCccEEEEecCCC
Q 019392 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (341)
Q Consensus 257 ~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k 289 (341)
.|..+++|..||. -|...|+-|.|++-.++..
T Consensus 212 lfa~ee~aq~aL~-khrq~iGqRYIElFRSTaa 243 (508)
T KOG1365|consen 212 LFACEEDAQFALR-KHRQNIGQRYIELFRSTAA 243 (508)
T ss_pred EecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHH
Confidence 9999999999994 4667788888888665544
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=1.2e-10 Score=80.32 Aligned_cols=60 Identities=13% Similarity=0.288 Sum_probs=52.0
Q ss_pred HHHHHHHHH----hcCCcEEEE-EEecCCC--CCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 129 ETFLHNCFS----HTGQVVNVK-VIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 129 e~~l~~~f~----~~G~v~~i~-i~~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
+++|+++|+ .||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+. ++.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~--gr~l~ 68 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD--GRTVK 68 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC--CEEEE
Confidence 678999998 999999995 7777666 899999999999999999999999999984 44443
No 117
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1e-10 Score=97.25 Aligned_cols=82 Identities=26% Similarity=0.337 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
....+.|.|||-.||.++.+.+|..+|..||.|++.++..|+.++.+|+|+||.|+++.+|..||..|||..|+.+...+
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999995544444
Q ss_pred cc
Q 019392 190 RL 191 (341)
Q Consensus 190 ~~ 191 (341)
.+
T Consensus 360 QL 361 (371)
T KOG0146|consen 360 QL 361 (371)
T ss_pred hh
Confidence 43
No 118
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=2.9e-10 Score=98.10 Aligned_cols=83 Identities=20% Similarity=0.427 Sum_probs=71.6
Q ss_pred CccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCeeecCc
Q 019392 201 RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSR 279 (341)
Q Consensus 201 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l-~~~~i~g~ 279 (341)
...++....+|||++|...++|.+|+++|- +||+|++|++... +++|||+|.+.++|+.|...+ |...|+|.
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFy-qyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFY-QYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHh-hcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 334556678999999999999999999996 9999999998864 359999999999999988766 55778999
Q ss_pred cEEEEecCCCC
Q 019392 280 PMRIDVATPKK 290 (341)
Q Consensus 280 ~i~v~~a~~k~ 290 (341)
+|+|.|+.++.
T Consensus 294 Rl~i~Wg~~~~ 304 (377)
T KOG0153|consen 294 RLKIKWGRPKQ 304 (377)
T ss_pred EEEEEeCCCcc
Confidence 99999999943
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=1.9e-10 Score=75.68 Aligned_cols=56 Identities=32% Similarity=0.660 Sum_probs=48.9
Q ss_pred HHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 132 l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
|+++|++||.|.++.+..++ +++|||+|.+.++|..|++.||+..+ .++.+++.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 68999999999999998765 48999999999999999999999999 6677887764
No 120
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.6e-10 Score=107.74 Aligned_cols=81 Identities=17% Similarity=0.410 Sum_probs=74.1
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
..++||||+.|+..++|.||..+| |.||+|.+|.++- ++|||||.+.+..+|.+|+.+|++..+.++.|+|.|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~f-eefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLF-EEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHH-HhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 456899999999999999999999 5999999998874 467999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 019392 286 ATPKKASG 293 (341)
Q Consensus 286 a~~k~~~~ 293 (341)
+..+..+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 99886553
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.04 E-value=7e-10 Score=89.29 Aligned_cols=73 Identities=30% Similarity=0.472 Sum_probs=67.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhc-CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~-G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
.......++|..+|..+.+.++..+|..+ |.|..+++.+++.||.++|||||+|++++.|.-|-+.||+.+|.
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 34566679999999999999999999998 78888999899999999999999999999999999999999993
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.8e-10 Score=98.30 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
.++...|||..|.+-+|+++|.-+|+.||.|.+|.+++|..+|.+..||||+|++.+++++|.-+|++.+| ..+.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHV 313 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHV 313 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999 5666777
Q ss_pred ccccc
Q 019392 192 NWATF 196 (341)
Q Consensus 192 ~~~~~ 196 (341)
.|+..
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 66653
No 123
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.98 E-value=3.4e-09 Score=86.17 Aligned_cols=86 Identities=20% Similarity=0.307 Sum_probs=71.4
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEec-CCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec---CccE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID-SNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS---SRPM 281 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~-~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~---g~~i 281 (341)
..-+||||.+||.++...+|..+|. .|-..+.+.|... +.....+-+|||.|.+..+|.+|++.|||..++ +..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR-~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFR-RFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhc-cCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4568999999999999999999997 8888888766543 222344579999999999999999999999986 7889
Q ss_pred EEEecCCCCCC
Q 019392 282 RIDVATPKKAS 292 (341)
Q Consensus 282 ~v~~a~~k~~~ 292 (341)
+|++++...+.
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99998776544
No 124
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=1.4e-09 Score=99.71 Aligned_cols=164 Identities=20% Similarity=0.241 Sum_probs=115.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
..+...++|+|-|||..+++++|+.+|+.||+|..|+....+ ++.+||+|.|..+|++|++.|++..+. ++.+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~--~~~~ 142 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIA--GKRI 142 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhh--hhhh
Confidence 446788999999999999999999999999999997765544 489999999999999999999999884 3333
Q ss_pred cccccc---------------ccCC--CCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCcc
Q 019392 190 RLNWAT---------------FSGS--DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 252 (341)
Q Consensus 190 ~~~~~~---------------~~~~--~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g 252 (341)
+..... .... ...........+|+ .|++..+...++..|. .+|.+.. +. ++.-+-
T Consensus 143 k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~-~~~~~~~-~~-----~~~~~h 214 (549)
T KOG4660|consen 143 KRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISS-VDGSSPG-RE-----TPLLNH 214 (549)
T ss_pred cCCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchh-ccCcccc-cc-----ccchhh
Confidence 321111 0000 00011122223444 4999888877788885 8887775 32 222222
Q ss_pred EEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCC
Q 019392 253 YGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (341)
Q Consensus 253 ~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k 289 (341)
--|++|.+..++..++... |+.+.+....+.++.+.
T Consensus 215 q~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred hhhhhhccccchhhcccCC-ceecCCCCceEEecCCC
Confidence 5788899999987776533 77888777777776663
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.91 E-value=5.2e-09 Score=88.48 Aligned_cols=82 Identities=29% Similarity=0.484 Sum_probs=74.9
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
...+|.|.|||+.++++||+++|. .||.++.+-|.++ .+|.+.|.|-|.|+..+||.+|++.+||..++|+.+++...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~-~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFA-EFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHH-HhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 446899999999999999999995 9999999999998 46999999999999999999999999999999999999876
Q ss_pred CCCC
Q 019392 287 TPKK 290 (341)
Q Consensus 287 ~~k~ 290 (341)
.+..
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6554
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.89 E-value=4.7e-09 Score=96.10 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=76.9
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
...+.|||.+|...+...+|+.+|+ +||.|+-.+|+++..+.-.++|+||++.+.++|.++|+.||.++|.|+.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFS-KyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFS-KYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHH-HhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3457899999999999999999998 999999999999887777889999999999999999999999999999999998
Q ss_pred cCCC
Q 019392 286 ATPK 289 (341)
Q Consensus 286 a~~k 289 (341)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 7654
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.88 E-value=7.6e-09 Score=96.82 Aligned_cols=184 Identities=14% Similarity=0.058 Sum_probs=130.7
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCC
Q 019392 100 NGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~ 179 (341)
+++.++.....-..+.+.+-+.+.+++.++.|++++|... .|....|..+...+...|-++|+|.....+.+|+.. +.
T Consensus 296 ~ns~sggstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~ 373 (944)
T KOG4307|consen 296 NNSYSGGSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NP 373 (944)
T ss_pred cCCCCCCCCCcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cc
Confidence 3344444445556788889999999999999999999753 355666666655555578999999999999999864 33
Q ss_pred CCCCCCCCCccccccc---------------------------------ccCCC-CccccCCCceEEeCCCCCCCCHHHH
Q 019392 180 SLMPNTDQPFRLNWAT---------------------------------FSGSD-RRTEACSDLSIFVGDLAPDVTDSIL 225 (341)
Q Consensus 180 ~~~~~~~~~~~~~~~~---------------------------------~~~~~-~~~~~~~~~~l~v~nlp~~~t~~~l 225 (341)
..+ ..+.+.+.... ..... .+.......+|||..||..+++.++
T Consensus 374 ~~~--~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~ 451 (944)
T KOG4307|consen 374 SDD--VNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPP 451 (944)
T ss_pred hhh--hhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccch
Confidence 322 22222221111 00000 0011234568999999999999999
Q ss_pred HHHhcccCCCeeE-EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCC
Q 019392 226 QETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (341)
Q Consensus 226 ~~~F~e~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k 289 (341)
.++|+ ..-.|++ |.|.+. .+++-++.|||.|..++++.+|+..-+.+.++.|.|+|+-...+
T Consensus 452 v~~f~-~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 452 VNKFM-GAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred hhhhh-hhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 99997 6666777 555554 56788899999999999999998777778889999999865544
No 128
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.86 E-value=1.6e-08 Score=92.40 Aligned_cols=80 Identities=26% Similarity=0.503 Sum_probs=68.0
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
..|||+|||.+++.++|+++|+ .||.|+...|..-...++..+||||+|++.+++..||.+ +-..|++++|.|+-.++
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk-~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFK-QFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHh-hcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4599999999999999999997 999999998876543344458999999999999999955 57889999999987665
Q ss_pred CC
Q 019392 289 KK 290 (341)
Q Consensus 289 k~ 290 (341)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 43
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=7.4e-09 Score=89.60 Aligned_cols=82 Identities=24% Similarity=0.421 Sum_probs=69.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 108 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
.+..+...++|||++|...++|.+|+++|.+||+|++|.+...+ ++|||+|.+.++|+.|..+.-...+ ..+.
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lv-I~G~ 293 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLV-INGF 293 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceee-ecce
Confidence 34456677899999999999999999999999999999998865 7999999999999999877655332 2677
Q ss_pred Ccccccccc
Q 019392 188 PFRLNWATF 196 (341)
Q Consensus 188 ~~~~~~~~~ 196 (341)
.+++.|...
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 788888876
No 130
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=5.5e-09 Score=86.41 Aligned_cols=74 Identities=20% Similarity=0.431 Sum_probs=66.8
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
..+||++||+.+.+.+|.++|. .||.|.+|.+.. ||+||+|.+..+|..|+..||+++|.|..+.|.|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~-~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFK-GYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHh-hccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3699999999999999999997 999999987652 5899999999999999999999999998899999887
Q ss_pred CCC
Q 019392 289 KKA 291 (341)
Q Consensus 289 k~~ 291 (341)
+..
T Consensus 73 ~~~ 75 (216)
T KOG0106|consen 73 KRR 75 (216)
T ss_pred ccc
Confidence 543
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.85 E-value=3.5e-08 Score=92.48 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=65.7
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
.|-+.|+|++++-+||.++|. .|-.+-.-.+++..+.|...|-|.|.|++.++|.+|...|+++.|..|+|++.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~-dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFN-DYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhc-ccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 788999999999999999997 887655433344447799999999999999999999999999999999999875
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.83 E-value=1.8e-08 Score=92.34 Aligned_cols=87 Identities=24% Similarity=0.339 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......+.|||.+|...+-..+|++||++||.|+-.+++.+..+.-.++|+||++.+.++|.+||+.|+.+.| .++.|
T Consensus 400 grs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmI 477 (940)
T KOG4661|consen 400 GRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMI 477 (940)
T ss_pred cccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceee
Confidence 4456778899999999999999999999999999999999887878889999999999999999999999999 78888
Q ss_pred ccccccccC
Q 019392 190 RLNWATFSG 198 (341)
Q Consensus 190 ~~~~~~~~~ 198 (341)
.|..++...
T Consensus 478 SVEkaKNEp 486 (940)
T KOG4661|consen 478 SVEKAKNEP 486 (940)
T ss_pred eeeecccCc
Confidence 887776443
No 133
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.82 E-value=3.4e-08 Score=71.55 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=69.1
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccC-CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec----CccEEE
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS----SRPMRI 283 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~-G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~----g~~i~v 283 (341)
+||-|+|||...|.++|.+++.+.+ |...-+.++.|-.++...|||||.|.+.++|.+-.+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 5899999999999999999986433 45666788999889999999999999999999999999998875 466778
Q ss_pred EecCCC
Q 019392 284 DVATPK 289 (341)
Q Consensus 284 ~~a~~k 289 (341)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887654
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.78 E-value=5e-08 Score=70.70 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=67.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhc--CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCC--CCCccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHT--GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT--DQPFRL 191 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~--G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~--~~~~~~ 191 (341)
+||+|+|||...|.++|.+++... |...-+.+..|..++...|||||.|.+.+.|.+..+.++|..|... .+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998763 6777788888988899999999999999999999999999988532 344455
Q ss_pred cccc
Q 019392 192 NWAT 195 (341)
Q Consensus 192 ~~~~ 195 (341)
.|+.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.78 E-value=9.6e-09 Score=87.18 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=76.9
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
......+||+|+.+.++.+++...|. .||.|..+.|..|+.++.+|||+||+|.+.+.+.+|+. |++..|.|+.|+|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~-~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFE-SCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhheee-ccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 44567899999999999999999995 99999999999999999999999999999999999996 99999999999999
Q ss_pred ecCCC
Q 019392 285 VATPK 289 (341)
Q Consensus 285 ~a~~k 289 (341)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87665
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=2.8e-09 Score=86.40 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
...++|||.|+...++|+.|.++|- .-|.|..|.|..++ +++.| ||||.|+++-+..-|++++||..+.++.|.|.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfi-qaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFI-QAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhh-ccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3567999999999999999999997 99999999999885 46777 999999999999999999999999999988887
Q ss_pred cC
Q 019392 286 AT 287 (341)
Q Consensus 286 a~ 287 (341)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 43
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.77 E-value=2.6e-08 Score=86.18 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=73.0
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeE--------EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~ 277 (341)
.....|||.|||.++|.+++.++|+ +||.|.+ |+|.++. .|..||-|++.|...++..-|++.|++..+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~s-KcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMS-KCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHH-hcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3455799999999999999999998 9998764 7888884 5999999999999999999999999999999
Q ss_pred CccEEEEecCC
Q 019392 278 SRPMRIDVATP 288 (341)
Q Consensus 278 g~~i~v~~a~~ 288 (341)
|+.|+|..|+=
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999998753
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.76 E-value=1.4e-08 Score=84.36 Aligned_cols=80 Identities=30% Similarity=0.549 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
+++.-.||+|.|-.+++++.|...|.+|-....-++++|+.+|+++||+||.|.+..++..|+++++|+.+ ..+++++
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpikl 264 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKL 264 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999 5666665
Q ss_pred cc
Q 019392 192 NW 193 (341)
Q Consensus 192 ~~ 193 (341)
..
T Consensus 265 Rk 266 (290)
T KOG0226|consen 265 RK 266 (290)
T ss_pred hh
Confidence 43
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=7.1e-09 Score=95.11 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=65.4
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
+.+.++|+|-|||.++++++|+.+|+ .||+|..|+. +-..+|.+||+|-|..+|++|+++|++.+|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~-~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFG-AYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHH-hhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 45678999999999999999999996 9999999764 344678999999999999999999999999999999
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.63 E-value=1.2e-07 Score=80.23 Aligned_cols=81 Identities=21% Similarity=0.370 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.+....+|+|.||++.++++||+++|..||.+..+-+..++ +|++.|.|-|.|...++|+.|++.+++..++ +++++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld--G~~mk 155 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALD--GRPMK 155 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccC--Cceee
Confidence 34445789999999999999999999999988888888776 7999999999999999999999999997774 44455
Q ss_pred cccc
Q 019392 191 LNWA 194 (341)
Q Consensus 191 ~~~~ 194 (341)
+...
T Consensus 156 ~~~i 159 (243)
T KOG0533|consen 156 IEII 159 (243)
T ss_pred eEEe
Confidence 5443
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.62 E-value=3.7e-09 Score=93.51 Aligned_cols=153 Identities=16% Similarity=0.304 Sum_probs=117.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEE-EEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i-~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
..+|++||.+.++..+|..+|.....-.+- .+++. ||+||...+...|.+|++.++|+.- ..+..+.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~e-lqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVE-LQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhh-hcCceeeccch
Confidence 468999999999999999999865321222 22222 8999999999999999999988642 24555555444
Q ss_pred cccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEE-ecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 019392 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~-~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~ 273 (341)
-.+ ...++++-|+|+|+...++.|..++. .||.|+.|... +|..+ -..-|+|.+.+.+..||..|+|
T Consensus 74 v~k-------kqrsrk~Qirnippql~wevld~Ll~-qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 74 VPK-------KQRSRKIQIRNIPPQLQWEVLDSLLA-QYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred hhH-------HHHhhhhhHhcCCHHHHHHHHHHHHh-ccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcc
Confidence 322 22345699999999999999999997 99999999764 33222 2345789999999999999999
Q ss_pred eeecCccEEEEecCC
Q 019392 274 VYCSSRPMRIDVATP 288 (341)
Q Consensus 274 ~~i~g~~i~v~~a~~ 288 (341)
..+....++|.|--.
T Consensus 142 ~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 142 PQLENQHLKVGYIPD 156 (584)
T ss_pred hHhhhhhhhcccCch
Confidence 999999999988543
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.58 E-value=1.4e-07 Score=88.88 Aligned_cols=84 Identities=23% Similarity=0.493 Sum_probs=74.1
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCC---CCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~---~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i 281 (341)
+...+.|||+||++.++++.|...|. .||.|.+|+|+..+. ..+.+-|+||.|.+..||++|++.|+|..+.++.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfG-rfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFG-RFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhc-ccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45567899999999999999999997 999999999987542 23456689999999999999999999999999999
Q ss_pred EEEecCCC
Q 019392 282 RIDVATPK 289 (341)
Q Consensus 282 ~v~~a~~k 289 (341)
++-|++.-
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99998554
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.54 E-value=1e-07 Score=80.89 Aligned_cols=83 Identities=20% Similarity=0.408 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
...-+.+.|||+|+.+.+|.+++...|+.||.|..+.+..|+..|.++||+||+|.+.+.++.++. |++..| .++.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i--~~~~i 172 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI--PGPAI 172 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc--ccccc
Confidence 345677899999999999999999999999999999999999999999999999999999999997 999999 55556
Q ss_pred cccccc
Q 019392 190 RLNWAT 195 (341)
Q Consensus 190 ~~~~~~ 195 (341)
.+.+..
T Consensus 173 ~vt~~r 178 (231)
T KOG4209|consen 173 EVTLKR 178 (231)
T ss_pred eeeeee
Confidence 555444
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.49 E-value=3.2e-07 Score=86.46 Aligned_cols=83 Identities=28% Similarity=0.598 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecC---CCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK---QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~---~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
.+..++.|||+||++.++++.|...|..||+|.+++|+.-+ ...+.+.|+||-|-+..+|++|++.|+|..+ ...
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~ 247 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEY 247 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eee
Confidence 35677889999999999999999999999999999998754 2345668999999999999999999999999 677
Q ss_pred Cccccccc
Q 019392 188 PFRLNWAT 195 (341)
Q Consensus 188 ~~~~~~~~ 195 (341)
.+++.|.+
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 78888875
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.44 E-value=5.1e-07 Score=82.73 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=56.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHH
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 176 (341)
.......+|||+|||.++++++|+++|..||.|+...|......++..+||||+|++.+++..||..
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 3445556699999999999999999999999999988876543455559999999999999999974
No 146
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.38 E-value=3.2e-07 Score=80.28 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=77.7
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeE--------EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecC
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g 278 (341)
...+|||.+|+..+++++|.++|. .+|.|.. |.|.+|++|+++||-|.|.|+|...|+.|+..++++.+.+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~-qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFL-QCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred ccccceeeccCccchHHHHHHHHh-hcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 455899999999999999999997 9998763 6788999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCCC
Q 019392 279 RPMRIDVATPKKAS 292 (341)
Q Consensus 279 ~~i~v~~a~~k~~~ 292 (341)
..|+|.++..+...
T Consensus 144 n~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 144 NTIKVSLAERRTGV 157 (351)
T ss_pred CCchhhhhhhccCc
Confidence 99999999887643
No 147
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=4.2e-06 Score=76.64 Aligned_cols=124 Identities=23% Similarity=0.294 Sum_probs=75.2
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecC---CCCCCcc---EEEEEeCCHHHHHHHHHHhCCeee
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS---NTGRTKG---YGFVRFGDENERSRAMTEMNGVYC 276 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~---~~~~~~g---~afV~F~~~~~A~~Al~~l~~~~i 276 (341)
....-+++|||++||++++|+.|...|. .||.+. |...... ..--++| |+|+.|+++.+....|..+.- .-
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~-~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~ 330 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFG-QFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GE 330 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcc-cccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cc
Confidence 4445678999999999999999999997 999766 3333211 1113456 999999999999988877653 22
Q ss_pred cCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 277 SSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 277 ~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
++..|+|+.-+.|.+. .+.+ .+..+ .+.+ .-+....--..+|||||+||.-+|
T Consensus 331 ~~~yf~vss~~~k~k~-VQIr----PW~la--Ds~f----v~d~sq~lDprrTVFVGgvprpl~ 383 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKE-VQIR----PWVLA--DSDF----VLDHNQPIDPRRTVFVGGLPRPLT 383 (520)
T ss_pred cceEEEEecCcccccc-eeEE----eeEec--cchh----hhccCcccCccceEEecCCCCcch
Confidence 3334444443333321 1111 00000 0000 001222334679999999997665
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=4.5e-08 Score=94.01 Aligned_cols=160 Identities=16% Similarity=0.224 Sum_probs=115.8
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 114 ETKTIWIGDLFHWMDET-FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~-~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
..+...+.++.+..... .++..|..+|.|+.|++......-..-.+.++.+....+++.|.. ..+..+. .+...+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a--~~~~av~ 646 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALA--NRSAAVG 646 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccC--CccccCC
Confidence 44556777887776665 678889999999999887632221222388999999999999985 5666663 3334443
Q ss_pred cccccCCCCcccc-----CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHH
Q 019392 193 WATFSGSDRRTEA-----CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (341)
Q Consensus 193 ~~~~~~~~~~~~~-----~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A 267 (341)
.+........... ....++||+||+..+.+++|...|+ .+|.+..+.+......++.||+|||+|...+++.+|
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~-~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFS-PSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcC-ccchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 3333222221111 2346899999999999999999998 999998887775556789999999999999999999
Q ss_pred HHHhCCeeec
Q 019392 268 MTEMNGVYCS 277 (341)
Q Consensus 268 l~~l~~~~i~ 277 (341)
+....+..++
T Consensus 726 V~f~d~~~~g 735 (881)
T KOG0128|consen 726 VAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhh
Confidence 9665555444
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.27 E-value=2.2e-07 Score=81.69 Aligned_cols=167 Identities=13% Similarity=0.120 Sum_probs=113.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCC---CCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ---TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
..|.|.||.+.+|.+.+..||.-.|.|.++.|+.+.. -......|||.|.+...+..|-. |...++-+..+.+...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 3899999999999999999999999999999987432 23455689999999999888875 4444332111111100
Q ss_pred -------------cccccC------------CCC---c---------------------cccCCCceEEeCCCCCCCCHH
Q 019392 193 -------------WATFSG------------SDR---R---------------------TEACSDLSIFVGDLAPDVTDS 223 (341)
Q Consensus 193 -------------~~~~~~------------~~~---~---------------------~~~~~~~~l~v~nlp~~~t~~ 223 (341)
++.... ... . .-....++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 000000 000 0 000112579999999999999
Q ss_pred HHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCC
Q 019392 224 ILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (341)
Q Consensus 224 ~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k 289 (341)
++.+.|. .+|+|...++.. +...-+|.|+|....+...|+ .++|.++.-....+..-+|.
T Consensus 167 e~~e~f~-r~Gev~ya~~as----k~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 167 ESGESFE-RKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhh-hcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCcc
Confidence 9999994 999999877653 333457889999999999999 56777766444444444443
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.24 E-value=6.9e-06 Score=56.74 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=47.2
Q ss_pred ceEEeCCCCCCCCHHHH----HHHhcccCCC-eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 209 LSIFVGDLAPDVTDSIL----QETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l----~~~F~e~~G~-v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
..|+|.|||.+.+...| +.++ +.||. |.+|. .+-|+|.|.+.+.|.+|.+.|+|..+-|++|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLs-dNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLS-DNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHH-HTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh-hccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 46999999998887654 5666 47764 54441 246999999999999999999999999999999
Q ss_pred EecCCCC
Q 019392 284 DVATPKK 290 (341)
Q Consensus 284 ~~a~~k~ 290 (341)
+|....+
T Consensus 72 ~~~~~~r 78 (90)
T PF11608_consen 72 SFSPKNR 78 (90)
T ss_dssp ESS--S-
T ss_pred EEcCCcc
Confidence 9975544
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.17 E-value=6.6e-06 Score=71.23 Aligned_cols=83 Identities=19% Similarity=0.364 Sum_probs=66.3
Q ss_pred CCCceEEeCCCCCCCCHHHH------HHHhcccCCCeeEEEEEecCCCC-CCccE--EEEEeCCHHHHHHHHHHhCCeee
Q 019392 206 CSDLSIFVGDLAPDVTDSIL------QETFSSKYPSVKGAKVIIDSNTG-RTKGY--GFVRFGDENERSRAMTEMNGVYC 276 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l------~~~F~e~~G~v~~v~i~~~~~~~-~~~g~--afV~F~~~~~A~~Al~~l~~~~i 276 (341)
...+-+||-+|++.+..|++ .++|. .||.|..|.|.+...+. ...+. .||+|.+.+||.+||..++|..+
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFG-QyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFG-QYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhh-hccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 34557899999998877773 58996 99999988876543111 11222 49999999999999999999999
Q ss_pred cCccEEEEecCCC
Q 019392 277 SSRPMRIDVATPK 289 (341)
Q Consensus 277 ~g~~i~v~~a~~k 289 (341)
+||.|+..|...|
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999999999887
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.16 E-value=4e-06 Score=62.27 Aligned_cols=70 Identities=16% Similarity=0.304 Sum_probs=44.7
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC-----eeecCccEEE
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-----VYCSSRPMRI 283 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~-----~~i~g~~i~v 283 (341)
+.|+|.+++..++.++|++.|+ .||.|..|.+..... .|||.|.+.++|.+|+..+.- ..|.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~-~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFS-QFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT--SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHH-hcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 4689999999999999999997 999999888765422 699999999999999987743 4566666666
Q ss_pred Ee
Q 019392 284 DV 285 (341)
Q Consensus 284 ~~ 285 (341)
+.
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.03 E-value=3.1e-05 Score=53.55 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=44.9
Q ss_pred CeEEEcCCCCCCCHHHH----HHHHHhcC-CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 116 KTIWIGDLFHWMDETFL----HNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l----~~~f~~~G-~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
..|+|.|||.+.+...| +.++..|| .|.+| . .+.|+|.|.+.+.|++|.+.|+|..+ .+..|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdV--fG~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDV--FGNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--S--SSS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhccccc--ccceEE
Confidence 46999999999887765 45666776 66555 1 16799999999999999999999988 566666
Q ss_pred ccccc
Q 019392 191 LNWAT 195 (341)
Q Consensus 191 ~~~~~ 195 (341)
+.+..
T Consensus 71 v~~~~ 75 (90)
T PF11608_consen 71 VSFSP 75 (90)
T ss_dssp EESS-
T ss_pred EEEcC
Confidence 66653
No 154
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=98.00 E-value=1.3e-05 Score=67.07 Aligned_cols=102 Identities=18% Similarity=0.391 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCCcccccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCC
Q 019392 168 AAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT 247 (341)
Q Consensus 168 ~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~ 247 (341)
.-|+.|...|++... .++.+++.|+.. ..|+|.||...++.|.|.+.|+ .||.|+...++.| ..
T Consensus 5 t~ae~ak~eLd~~~~--~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~-~fg~~e~av~~vD-~r 68 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP--KGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFR-RFGPIERAVAKVD-DR 68 (275)
T ss_pred cHHHHHHHhcCCCCC--CCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhh-hcCccchheeeec-cc
Confidence 356777778999988 778888888753 4799999999999999999997 9999999888888 55
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHhCC----eeecCccEEEEe
Q 019392 248 GRTKGYGFVRFGDENERSRAMTEMNG----VYCSSRPMRIDV 285 (341)
Q Consensus 248 ~~~~g~afV~F~~~~~A~~Al~~l~~----~~i~g~~i~v~~ 285 (341)
++..+-++|+|...-.|.+|+..++. ....++..-|..
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 88889999999999999999998853 233455555543
No 155
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.00 E-value=9.1e-06 Score=72.67 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=62.1
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEec---CCCC--C--------CccEEEEEeCCHHHHHHHHHHh
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID---SNTG--R--------TKGYGFVRFGDENERSRAMTEM 271 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~---~~~~--~--------~~g~afV~F~~~~~A~~Al~~l 271 (341)
.-..++|.+.|||.+-..+.|.++|+ .+|.|.+|+|+.. ..+. . .+-+|+|+|+..+.|.+|.+.|
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg-~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFG-TVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhh-cccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 34788999999999999999999998 9999999999876 3222 1 1457999999999999999888
Q ss_pred CCeeecCccEEEE
Q 019392 272 NGVYCSSRPMRID 284 (341)
Q Consensus 272 ~~~~i~g~~i~v~ 284 (341)
+...-+-..++|.
T Consensus 307 ~~e~~wr~glkvk 319 (484)
T KOG1855|consen 307 NPEQNWRMGLKVK 319 (484)
T ss_pred chhhhhhhcchhh
Confidence 7544443334443
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.94 E-value=2.6e-05 Score=68.55 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcE--------EEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~--------~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
.....+|||-+|+..+++.+|.++|..||.|. .|+|.+|+++++.|+-|.|.|++...|..|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 56677899999999999999999999999664 3788889999999999999999999999999999999994
Q ss_pred CCCCCccccccccc
Q 019392 184 NTDQPFRLNWATFS 197 (341)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (341)
+..++|..+...
T Consensus 143 --gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 --GNTIKVSLAERR 154 (351)
T ss_pred --CCCchhhhhhhc
Confidence 467777666543
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=2.3e-05 Score=72.43 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=64.2
Q ss_pred CCceEEeCCCCCCC------CHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec-Cc
Q 019392 207 SDLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SR 279 (341)
Q Consensus 207 ~~~~l~v~nlp~~~------t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~-g~ 279 (341)
-...|+|.|+|.-- -..-|.++|+ ++|.|....++.+.. |..+||.|++|.+..+|..|++.|||+.|+ .+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfs-k~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFS-KAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHH-hhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45589999998632 2244678997 999999999998866 459999999999999999999999999987 67
Q ss_pred cEEEEec
Q 019392 280 PMRIDVA 286 (341)
Q Consensus 280 ~i~v~~a 286 (341)
++.|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 7777643
No 158
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.85 E-value=9.9e-06 Score=67.73 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=61.7
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCC--------CCCc----cEEEEEeCCHHHHHHHHHHhCCe
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT--------GRTK----GYGFVRFGDENERSRAMTEMNGV 274 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~--------~~~~----g~afV~F~~~~~A~~Al~~l~~~ 274 (341)
....||+++||+.+....|+++|+ .||.|-+|.|-....+ |..+ .-|+|+|.+...|......||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~-~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILS-QYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHH-hccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 345899999999999999999997 9999999998765443 2222 24789999999999999999999
Q ss_pred eecCcc
Q 019392 275 YCSSRP 280 (341)
Q Consensus 275 ~i~g~~ 280 (341)
.|+|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999875
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.79 E-value=5.1e-05 Score=56.39 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=39.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCC
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~ 180 (341)
+.|+|.++...++-++|+++|+.||.|..|.+.+.. ..|||.|.+.+.|..|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999999988887654 47999999999999999876554
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.77 E-value=2.5e-05 Score=68.01 Aligned_cols=70 Identities=23% Similarity=0.453 Sum_probs=61.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC--CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCC
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G--~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~ 184 (341)
...+|||||-|++|++||-+.+...| .+.++++..++.+|.+||||+|...+..+..+.++.|-.+.|.+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecC
Confidence 34589999999999999999988777 67888999999999999999999999999999998877777743
No 161
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.76 E-value=7.5e-05 Score=63.66 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=54.0
Q ss_pred HHHHHHHhcccCCCeeEEEEEecCCCCCCcc-EEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKG-YGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 222 ~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g-~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
++++.+.+ ++||.|.+|.|+.+..--...- --||+|+..++|.+|+..|||..|+||.++..|..-
T Consensus 300 ede~keEc-eKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHH-HhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 46678888 5999999999887654322221 379999999999999999999999999999988654
No 162
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.74 E-value=2.6e-05 Score=67.93 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=65.2
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCC--CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G--~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
..++||+||-|++|++||.+.+. ..| .+.+++++.++.+|.+||||+|...+..+.++.++.|-.++|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~-S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQ-STGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHH-hhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 45799999999999999999884 666 3667888889999999999999999999999999999999998865444
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.72 E-value=9e-05 Score=47.59 Aligned_cols=52 Identities=23% Similarity=0.359 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHH
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al 174 (341)
+.|-|.+.+.+..+. |..+|..||+|.++.+.... .+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 568889998776654 45588899999998876332 68999999999999985
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=8.4e-05 Score=47.73 Aligned_cols=52 Identities=15% Similarity=0.383 Sum_probs=41.2
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al 268 (341)
+.|-|.+.+.+..+. ++++|. .||+|..+.+... .-+.||.|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~-~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFA-SFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHH-hcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 467888988777655 555886 8999999887632 228999999999999985
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.64 E-value=6.9e-05 Score=67.19 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=63.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEec---CCCC--C--------ccceEEEEecCHHHHHHHHHHhC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN---KQTG--Q--------SEGYGFVEFYSRAAAEKVLQSYS 178 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~---~~~g--~--------~~g~afV~f~~~~~A~~Al~~l~ 178 (341)
+-..++|.+-|||.+-..+.|.++|..+|.|..|+|++- ..+. . .+-+|+|+|+..+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 358899999999999999999999999999999999986 3222 1 24579999999999999999886
Q ss_pred CCCCCCCCCCccc
Q 019392 179 GSLMPNTDQPFRL 191 (341)
Q Consensus 179 ~~~~~~~~~~~~~ 191 (341)
...-+..+..+++
T Consensus 308 ~e~~wr~glkvkL 320 (484)
T KOG1855|consen 308 PEQNWRMGLKVKL 320 (484)
T ss_pred hhhhhhhcchhhh
Confidence 5544444444443
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.62 E-value=2.5e-05 Score=65.58 Aligned_cols=64 Identities=17% Similarity=0.373 Sum_probs=53.8
Q ss_pred HHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecC
Q 019392 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (341)
Q Consensus 223 ~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~ 287 (341)
++|...|.++||+|+++.|..+.. -.-+|-+||.|...++|++|+..||+..+.|++|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 566667756999999998776532 3456889999999999999999999999999999998763
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.52 E-value=0.0001 Score=64.00 Aligned_cols=111 Identities=12% Similarity=0.251 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHH------HHHHHhcCCcEEEEEEecCCCCC-ccce--EEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 116 KTIWIGDLFHWMDETFL------HNCFSHTGQVVNVKVIRNKQTGQ-SEGY--GFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l------~~~f~~~G~v~~i~i~~~~~~g~-~~g~--afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
.-|||-+|+..+.+|++ .++|..||.|..|.+.+...+.. ..+. .||+|.+.++|.+||...+|..+ .+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--DG 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--DG 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc--cC
Confidence 45799999988877763 37899999999988766432211 1222 39999999999999999999999 55
Q ss_pred CCcccccccccC---CCCccccCCCceEEeCCCCC---CCCHHHHHHH
Q 019392 187 QPFRLNWATFSG---SDRRTEACSDLSIFVGDLAP---DVTDSILQET 228 (341)
Q Consensus 187 ~~~~~~~~~~~~---~~~~~~~~~~~~l~v~nlp~---~~t~~~l~~~ 228 (341)
+.++..+...+= -.+........+.|+..-.+ .++.++|...
T Consensus 193 r~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred ceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 666665554221 01111122334566643332 4677777544
No 168
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.50 E-value=8.7e-05 Score=65.40 Aligned_cols=82 Identities=21% Similarity=0.444 Sum_probs=69.4
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 113 DETKTIW-IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 113 ~~~~~l~-v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++| |++|+..+++++|+.+|..+|.|..+++..+..++.++|||||.|.+...+..++.. ....+ .++++.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~ 258 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI--GGRPLRL 258 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc--cCccccc
Confidence 3444555 999999999999999999999999999999999999999999999999999999976 66666 5666666
Q ss_pred cccccc
Q 019392 192 NWATFS 197 (341)
Q Consensus 192 ~~~~~~ 197 (341)
.+....
T Consensus 259 ~~~~~~ 264 (285)
T KOG4210|consen 259 EEDEPR 264 (285)
T ss_pred ccCCCC
Confidence 655543
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.46 E-value=0.00061 Score=49.84 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=50.2
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEE-EEecC------CCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCc-
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK-VIIDS------NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR- 279 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~-i~~~~------~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~- 279 (341)
.+-|.|-+.|+. ....|.+.|+ .||+|.+.. +.++. .......+-.|+|+++.+|.+|| ..||..++|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~-~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFS-SFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHH-CCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHH-hcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 446888899988 4566778886 999998875 11100 00112348999999999999999 7799999875
Q ss_pred cEEEEecC
Q 019392 280 PMRIDVAT 287 (341)
Q Consensus 280 ~i~v~~a~ 287 (341)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45577764
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.29 E-value=0.00036 Score=58.60 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=61.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCC--------CCccc----eEEEEecCHHHHHHHHHHhCCCC
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT--------GQSEG----YGFVEFYSRAAAEKVLQSYSGSL 181 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~--------g~~~g----~afV~f~~~~~A~~Al~~l~~~~ 181 (341)
.+-.||+++||+.++...|+++|..||.|-.|.+-....+ |..+. -++|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988776544 33332 35699999999999999999999
Q ss_pred CCCCC
Q 019392 182 MPNTD 186 (341)
Q Consensus 182 ~~~~~ 186 (341)
|++..
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 97644
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00038 Score=64.65 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=58.7
Q ss_pred CCCCeEEEcCCCCC--CCHH----HHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 113 DETKTIWIGDLFHW--MDET----FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 113 ~~~~~l~v~nLp~~--~te~----~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
.....|+|.|+|-- ..-+ .|.++|+++|++..+.+..+...| ++||.|++|.+..+|..|++.|||+.|+...
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45567899999842 2222 245779999999999999887544 9999999999999999999999999886433
No 172
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.20 E-value=0.00022 Score=63.94 Aligned_cols=77 Identities=25% Similarity=0.460 Sum_probs=60.3
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCe-eecCccEEEEecC
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV-YCSSRPMRIDVAT 287 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~-~i~g~~i~v~~a~ 287 (341)
++||++||.+.++..+|..+|.+.--....-.++ ..||+||.+.+...|.+|++.++|+ ++.|+++.|..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 3699999999999999999996321111111122 2379999999999999999999984 5789999999998
Q ss_pred CCCCC
Q 019392 288 PKKAS 292 (341)
Q Consensus 288 ~k~~~ 292 (341)
+++-+
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 88654
No 173
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.19 E-value=0.00014 Score=70.94 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=70.1
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
...+++||++||+..+++.+|+..|. .+|.|.+|.|.+.+- +.-.-||||.|.+...+-.|+-.+.+..|..-.+++.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~-e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFD-ESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhh-hhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34567999999999999999999996 999999999876632 3334589999999999999999999998887777777
Q ss_pred ecCCC
Q 019392 285 VATPK 289 (341)
Q Consensus 285 ~a~~k 289 (341)
+..++
T Consensus 447 lG~~k 451 (975)
T KOG0112|consen 447 LGQPK 451 (975)
T ss_pred ccccc
Confidence 77653
No 174
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.09 E-value=0.0029 Score=41.67 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=44.2
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccC---CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKY---PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~---G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l 271 (341)
.+|+|+++. +++.++|+.+|. .| ....+|..+-|. -|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~-~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFS-EYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHH-HhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999995 488899999997 77 236678888773 3889999999999999764
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.07 E-value=0.0019 Score=50.14 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=45.1
Q ss_pred HHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCC
Q 019392 224 ILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (341)
Q Consensus 224 ~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~ 290 (341)
+|.+.|. .||+|.=||+.-+ .-+|+|.+-++|.+|+ .++|..++|+.|+|+...+.=
T Consensus 52 ~ll~~~~-~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFA-QYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHH-CCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-----
T ss_pred HHHHHHH-hCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccH
Confidence 6778886 8999888877643 4899999999999999 899999999999999877653
No 176
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.06 E-value=8e-05 Score=70.41 Aligned_cols=109 Identities=13% Similarity=0.238 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
....+|||+|+...+..+-++.++..||.|.+++... |+|++|.....+.+|+..++-..+++.+...+++
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4667899999999999999999999999998876553 8999999999999999988888776666555553
Q ss_pred cccccCCCCc-----------cccCCCceEEeCCCCCCCCHHHHHHHhc
Q 019392 193 WATFSGSDRR-----------TEACSDLSIFVGDLAPDVTDSILQETFS 230 (341)
Q Consensus 193 ~~~~~~~~~~-----------~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 230 (341)
.......... ......+.++|.+++....+....+.|.
T Consensus 109 ~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 109 EQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 2221111110 0111134567777777776666666663
No 177
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.00 E-value=0.0021 Score=59.74 Aligned_cols=72 Identities=10% Similarity=0.277 Sum_probs=58.0
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhc-ccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--eeecCccEEE
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFS-SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPMRI 283 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~-e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~--~~i~g~~i~v 283 (341)
..|.|.|+-||..+-.|+++-+|+ |.|..+.+|.+..+.. =||+|++..||..|.+.|.. ++|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 445788899999999999999996 2577899998876532 69999999999999988864 5677777665
Q ss_pred Ee
Q 019392 284 DV 285 (341)
Q Consensus 284 ~~ 285 (341)
++
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 44
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.93 E-value=0.00074 Score=63.19 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=65.6
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee---cCccE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRPM 281 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i---~g~~i 281 (341)
...++.|||.||-.-+|.-.|+.++...+|.|++.+| | +.|..|||.|.+.++|.+-+.+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3456789999999999999999999657777887743 3 2345799999999999999999999766 47889
Q ss_pred EEEecCCCC
Q 019392 282 RIDVATPKK 290 (341)
Q Consensus 282 ~v~~a~~k~ 290 (341)
.+.|+....
T Consensus 515 ~adf~~~de 523 (718)
T KOG2416|consen 515 IADFVRADE 523 (718)
T ss_pred EeeecchhH
Confidence 999976653
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.87 E-value=0.0048 Score=42.86 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=42.1
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~ 273 (341)
...||. +|.++...||.++|+ .||.|. |..+-|. -|||...+.+.|..|++.+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFs-pfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFS-PFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCC-CCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhc-cCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 356675 999999999999998 999876 6666552 499999999999999988863
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.86 E-value=0.0087 Score=39.42 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=45.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhc----CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHh
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~----G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 177 (341)
.+|+|+++. +++.++|+.+|..| + ...|..+.|. .|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999995 58899999999999 5 4588888885 4899999999999999754
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.71 E-value=0.0014 Score=61.45 Aligned_cols=79 Identities=11% Similarity=0.165 Sum_probs=63.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHH-hcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC-CCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP-NTDQP 188 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~-~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~-~~~~~ 188 (341)
....+..|||.||-.-+|.-.|+.++. .+|.|++.+|-+- |..|||.|.+.++|...+..|||..|. +..+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 557888999999999999999999999 5667777744332 357999999999999999999999886 34555
Q ss_pred ccccccc
Q 019392 189 FRLNWAT 195 (341)
Q Consensus 189 ~~~~~~~ 195 (341)
+.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 5555544
No 182
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.66 E-value=0.0049 Score=45.12 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEE-ecC------CCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVI-RNK------QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~-~~~------~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
...+.|.|-+.|.. ....|.+.|+.||.|.+..-. ++. .......+..|+|.++.+|.+||. .||..+.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc
Confidence 34566888899887 666788999999999887511 100 001123689999999999999996 6998884
No 183
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.64 E-value=0.0008 Score=58.99 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=65.3
Q ss_pred CceEEeCCCCCCCCHHHH---HHHhcccCCCeeEEEEEecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc
Q 019392 208 DLSIFVGDLAPDVTDSIL---QETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l---~~~F~e~~G~v~~v~i~~~~~----~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~ 280 (341)
..-+||-+|+..+..+.+ .+.|. .||.|.+|.+.++.. .+-.. -+||+|+..++|..||...+|..++|+.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfg-qygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFG-QYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhCCCccccchhhhhCccccc-ccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhh
Confidence 346788888887766665 36786 899999998887752 12222 3899999999999999999999999999
Q ss_pred EEEEecCCCCC
Q 019392 281 MRIDVATPKKA 291 (341)
Q Consensus 281 i~v~~a~~k~~ 291 (341)
|+..+...+..
T Consensus 155 lka~~gttkyc 165 (327)
T KOG2068|consen 155 LKASLGTTKYC 165 (327)
T ss_pred hHHhhCCCcch
Confidence 99999888843
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.58 E-value=0.0023 Score=58.43 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=59.1
Q ss_pred eEEeCCCCCCC-CHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 210 SIFVGDLAPDV-TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 210 ~l~v~nlp~~~-t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
.|-+.-+++.+ +-++|...|. .||+|..|-|-... -.|.|+|.+..+|-+|. ..++..|++|.|+|.|-.+
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA-~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFA-QFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhh-hcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 45555555554 5688999997 99999999875441 25999999999998887 7899999999999999888
Q ss_pred CC
Q 019392 289 KK 290 (341)
Q Consensus 289 k~ 290 (341)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 54
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.43 E-value=0.0017 Score=54.72 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=46.7
Q ss_pred HHHHHHHH-hcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 130 TFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 130 ~~l~~~f~-~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
++|...|+ +||+|++++|..+. .-.-.|-+||.|..+++|++|+..||+..+ .+++|...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeee
Confidence 34444444 89999999887654 234568899999999999999999999999 666665544
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.41 E-value=0.016 Score=44.56 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=55.6
Q ss_pred cCCCceEEeCCCCCCC----CHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc
Q 019392 205 ACSDLSIFVGDLAPDV----TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~----t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~ 280 (341)
..+-.+|.|+=|..++ +-..+...++ .||+|.+|.+.- +. -|.|.|+|..+|-+|+.++.. ...|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls-~fGpI~SVT~cG-----rq--savVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLS-VFGPIQSVTLCG-----RQ--SAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHH-hcCCcceeeecC-----Cc--eEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3344578887655544 3344555666 999999998762 22 499999999999999998885 667889
Q ss_pred EEEEecCC
Q 019392 281 MRIDVATP 288 (341)
Q Consensus 281 i~v~~a~~ 288 (341)
+.|+|-.+
T Consensus 154 ~qCsWqqr 161 (166)
T PF15023_consen 154 FQCSWQQR 161 (166)
T ss_pred EEeecccc
Confidence 99998654
No 187
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.39 E-value=0.017 Score=48.86 Aligned_cols=62 Identities=18% Similarity=0.334 Sum_probs=55.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 178 (341)
..|+|.||...++.+.|..-|+.||+|..-.++.|- .++..+-++|+|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 679999999999999999999999999887777664 67888899999999999999998773
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.37 E-value=0.014 Score=40.59 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=42.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCC
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~ 179 (341)
...+|+ .|..+...||.++|+.||.| .|..+.| ..|||...+.+.|..++..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 345565 99999999999999999987 6777766 3699999999999999987764
No 189
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.27 E-value=0.055 Score=40.40 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=50.3
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccC-CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecC
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~-G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g 278 (341)
...+.+...|+.++-++|..+.+ .+ ..|..++|++|.. ..+-.+++.|.+.++|++-.+.+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~-~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGA-PFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhh-cccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33455556666677777776664 44 3477888998743 366789999999999999999999988753
No 190
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.20 E-value=0.33 Score=42.16 Aligned_cols=176 Identities=11% Similarity=0.156 Sum_probs=104.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecC-------CCCCccceEEEEecCHHHHHHHH----HHhCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-------QTGQSEGYGFVEFYSRAAAEKVL----QSYSG 179 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~-------~~g~~~g~afV~f~~~~~A~~Al----~~l~~ 179 (341)
+.--+|.|.+.|+..+++--.+...|..||+|++|.++.+. ...+......+.|-+.+.+-... .+|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999999875 12233457889999998876433 33332
Q ss_pred CCCCCCCCCccccccccc--CCC-------------------CccccCCCceEEeCCCCCCCCHHHH-HHHhc--ccCC-
Q 019392 180 SLMPNTDQPFRLNWATFS--GSD-------------------RRTEACSDLSIFVGDLAPDVTDSIL-QETFS--SKYP- 234 (341)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~--~~~-------------------~~~~~~~~~~l~v~nlp~~~t~~~l-~~~F~--e~~G- 234 (341)
..-.-....+++.+.... ... .-......|.|.|. +...+.++++ .+.+. ..-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCC
Confidence 211113444444444321 000 00122445666663 3344434333 32221 0122
Q ss_pred ---CeeEEEEEecC--CCCCCccEEEEEeCCHHHHHHHHHHhCC--eeec-CccEEEEecC
Q 019392 235 ---SVKGAKVIIDS--NTGRTKGYGFVRFGDENERSRAMTEMNG--VYCS-SRPMRIDVAT 287 (341)
Q Consensus 235 ---~v~~v~i~~~~--~~~~~~g~afV~F~~~~~A~~Al~~l~~--~~i~-g~~i~v~~a~ 287 (341)
.+++|.|+.-. ...-++-||.++|-+..-|.+.++.|.. ...+ .+...|.+..
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 26777776432 2234567999999999999999988863 3333 3444444433
No 191
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.03 E-value=0.0084 Score=53.55 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=61.2
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~---~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
..|.|.||.+.++.+.+..+|. ..|.|..++|+....+ ....-.|||.|.|..++..|- .|.++.+-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg-~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFG-NLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHh-hccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 3799999999999999999997 9999999998763221 233458999999999998887 6666777677777665
Q ss_pred cC
Q 019392 286 AT 287 (341)
Q Consensus 286 a~ 287 (341)
+-
T Consensus 86 ~~ 87 (479)
T KOG4676|consen 86 YG 87 (479)
T ss_pred cC
Confidence 43
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.02 E-value=0.0097 Score=48.69 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=50.3
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhccc-CCCe---eEEEEEecCCC-C-CCccEEEEEeCCHHHHHHHHHHhCCeeecC--
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSK-YPSV---KGAKVIIDSNT-G-RTKGYGFVRFGDENERSRAMTEMNGVYCSS-- 278 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~-~G~v---~~v~i~~~~~~-~-~~~g~afV~F~~~~~A~~Al~~l~~~~i~g-- 278 (341)
...+|.|++||+++|++++.+.++ . ++.- ..+.-...... . ....-|||.|.+.+++..-+..++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~-~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQIS-PWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCS-S--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhh-hhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 345899999999999999999775 4 6655 33331122111 1 122459999999999999999999977642
Q ss_pred ---ccEEEEecCCCCC
Q 019392 279 ---RPMRIDVATPKKA 291 (341)
Q Consensus 279 ---~~i~v~~a~~k~~ 291 (341)
....|.+|--++.
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 2345666655443
No 193
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.90 E-value=0.024 Score=48.78 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCCCcc-ceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQSE-GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 129 e~~l~~~f~~~G~v~~i~i~~~~~~g~~~-g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
++++++-+++||.|..|.|..++..-... ---||+|+..++|.+|+-.|||+.| .++.++-.|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF--GGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF--GGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee--cceeeehee
Confidence 34677788999999999888775322211 2469999999999999999999999 555555443
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.83 E-value=0.12 Score=38.54 Aligned_cols=69 Identities=10% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G-~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
..+..+.+...|+.++.++|..+...+- .|..++|++|.. ..+-.++++|.+.+.|....+.+||+.+.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444556666666677777776666553 577889998753 34567899999999999999999999883
No 195
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.72 E-value=0.06 Score=37.16 Aligned_cols=66 Identities=14% Similarity=0.336 Sum_probs=38.8
Q ss_pred eEEeCCCC--CCCCHHHHHHHhcccCCC-----eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 210 SIFVGDLA--PDVTDSILQETFSSKYPS-----VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 210 ~l~v~nlp--~~~t~~~l~~~F~e~~G~-----v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
+||| |+. ..++..+|..++. ..+. |-+|.|..+ |+||+-. .+.|.++++.|++..+.|++|+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~-~~~gi~~~~IG~I~I~~~--------~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ 70 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAIC-NEAGIPGRDIGRIDIFDN--------FSFVEVP-EEVAEKVLEALNGKKIKGKKVR 70 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHH-TCTTB-GGGEEEEEE-SS---------EEEEE--TT-HHHHHHHHTT--SSS----
T ss_pred EEEE-EcccccCCCHHHHHHHHH-hccCCCHHhEEEEEEeee--------EEEEEEC-HHHHHHHHHHhcCCCCCCeeEE
Confidence 4555 333 4688899999997 4443 556776543 8999985 4588999999999999999999
Q ss_pred EEec
Q 019392 283 IDVA 286 (341)
Q Consensus 283 v~~a 286 (341)
|+.|
T Consensus 71 ve~A 74 (74)
T PF03880_consen 71 VERA 74 (74)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9875
No 196
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.59 E-value=0.0078 Score=58.87 Aligned_cols=75 Identities=24% Similarity=0.266 Sum_probs=63.7
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee--cCccEEEEecC
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVAT 287 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i--~g~~i~v~~a~ 287 (341)
+..+.|.+-..+...|..+|+ .||.|.+++.+++-+ +|.|+|.+.+.|..|+++|+|+++ .|-+.+|.+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s-~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCS-DYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHH-hhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 344555566788899999998 999999999988855 799999999999999999999876 48889999988
Q ss_pred CCCC
Q 019392 288 PKKA 291 (341)
Q Consensus 288 ~k~~ 291 (341)
.-..
T Consensus 373 ~~~~ 376 (1007)
T KOG4574|consen 373 TLPM 376 (1007)
T ss_pred cccc
Confidence 7653
No 197
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.33 E-value=0.093 Score=40.46 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCCCCCeEEEcCCCCCCC-HHH---HHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMD-ETF---LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t-e~~---l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
.+.+..||.|+=|..++. .+| |...++.||+|.++.++.. -.|.|.|++..+|-+|+..+.... -+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~---pg 151 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRA---PG 151 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCC---CC
Confidence 456777898887765543 334 4455788999999988643 369999999999999999887643 35
Q ss_pred CCccccccc
Q 019392 187 QPFRLNWAT 195 (341)
Q Consensus 187 ~~~~~~~~~ 195 (341)
..+.+.|-.
T Consensus 152 tm~qCsWqq 160 (166)
T PF15023_consen 152 TMFQCSWQQ 160 (166)
T ss_pred ceEEeeccc
Confidence 556666643
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.30 E-value=0.047 Score=44.87 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=46.2
Q ss_pred CHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CeeecCccEEEEecCCCC
Q 019392 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPMRIDVATPKK 290 (341)
Q Consensus 221 t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~--~~~i~g~~i~v~~a~~k~ 290 (341)
..+.|+++|. .|+.+..+.+++.- +-..|.|.+.++|.+|...|+ +..+.|..++|.|+....
T Consensus 8 ~~~~l~~l~~-~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFS-TYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHH-TT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHH-hcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4588999997 99999988877532 248999999999999999999 999999999999985543
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.29 E-value=0.032 Score=52.23 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=51.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHh--cCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~--~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 178 (341)
.....|.|.|+.||..+-+|+|+.||+. |-++.+|.+-.+.. =||+|++..+|..|.+.|.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHH
Confidence 3456778999999999999999999985 77889998877642 4999999999999987654
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.20 E-value=0.11 Score=47.60 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=58.2
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~ 277 (341)
++.|+|-.+|..++-.||..++....-.|..|+|++|.. ..+-..+|.|.+.++|..-.+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 779999999999999999999863445688999999744 34457999999999999999999998775
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.04 E-value=0.017 Score=47.34 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=44.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-cCCcEEEEEE---ecC-CCC-CccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVI---RNK-QTG-QSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~-~G~v~~i~i~---~~~-~~g-~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
.....|.|++||+++|++++.+.+.. ++.-...... ... ... ....-|||.|.+.+++......++|..|.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 45568999999999999999987776 5554222222 111 111 12346999999999999999999997763
No 202
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.21 Score=47.33 Aligned_cols=129 Identities=14% Similarity=0.215 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019392 111 TNDETKTIWIGDLFHW-MDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~-~te~~l~~~f~~~----G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~ 185 (341)
....++.|-|-|+.|+ +...+|..+|+.| |.|.+|.|+... || ...|....+ .
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-------FG-------------keRM~eEeV--~ 227 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-------FG-------------KERMKEEEV--H 227 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-------hh-------------HHHhhhhcc--c
Confidence 3567889999999997 8888999998876 588888887753 11 112222222 1
Q ss_pred CCCcccccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHH
Q 019392 186 DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265 (341)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~ 265 (341)
+.++.+.-.. ..... . . .....-++-.+..+. .|+ +..++. -||.|+|.+.+.|.
T Consensus 228 GP~~el~~~~--e~~~~--s----~-----sD~ee~~~~~~~kLR-~Yq-~~rLkY----------YyAVvecDsi~tA~ 282 (650)
T KOG2318|consen 228 GPPKELFKPV--EEYKE--S----E-----SDDEEEEDVDREKLR-QYQ-LNRLKY----------YYAVVECDSIETAK 282 (650)
T ss_pred CChhhhcccc--ccCcc--c----c-----cchhhhhhHHHHHHH-HHH-hhhhee----------EEEEEEecCchHHH
Confidence 2212111000 00000 0 0 111111112233332 343 232221 28999999999999
Q ss_pred HHHHHhCCeeec--CccEEEEec
Q 019392 266 RAMTEMNGVYCS--SRPMRIDVA 286 (341)
Q Consensus 266 ~Al~~l~~~~i~--g~~i~v~~a 286 (341)
.....|+|.++. +..|.++|.
T Consensus 283 ~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 283 AVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHhcCcceeccccceeeeeec
Confidence 999999999987 455556654
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.82 E-value=0.048 Score=38.77 Aligned_cols=69 Identities=13% Similarity=0.240 Sum_probs=43.8
Q ss_pred EEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccccccCCCC----ccccCCCceEEeCCCCCCCCHHHHHHHh
Q 019392 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDR----RTEACSDLSIFVGDLAPDVTDSILQETF 229 (341)
Q Consensus 160 afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~v~nlp~~~t~~~l~~~F 229 (341)
|+|+|.+..-|.+.++. ....+.-....+++.-........ -......++|.|.|||..+.+++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999863 333332233333332222111110 1234467799999999999999998877
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.31 E-value=0.029 Score=55.13 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=64.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccccc
Q 019392 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (341)
Q Consensus 117 ~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~ 196 (341)
+.++.|.+-..+...|..+|..||.|.+.+..++- ..|.|+|.+.+.|..|++.+.|+.+...+.+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34555666778889999999999999999998886 579999999999999999999999887888888888874
Q ss_pred c
Q 019392 197 S 197 (341)
Q Consensus 197 ~ 197 (341)
.
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 3
No 205
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.20 E-value=0.064 Score=41.84 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 131 FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 131 ~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
+|...|..||.+.-++++.+ .-+|+|.+...|.+|+. ++|..+ .++.+++
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v--~g~~l~i 101 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV--NGRTLKI 101 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE--TTEEEEE
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE--CCEEEEE
Confidence 56677888999888877764 48999999999999995 899999 4444444
No 206
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=94.05 E-value=0.055 Score=46.28 Aligned_cols=140 Identities=15% Similarity=0.337 Sum_probs=77.2
Q ss_pred cEEEEEEecCCCCCccceEEEEecCH----HHHHHHHHHhCCCCCC--CCCCCcccc-------------cccccCCCC-
Q 019392 142 VVNVKVIRNKQTGQSEGYGFVEFYSR----AAAEKVLQSYSGSLMP--NTDQPFRLN-------------WATFSGSDR- 201 (341)
Q Consensus 142 v~~i~i~~~~~~g~~~g~afV~f~~~----~~A~~Al~~l~~~~~~--~~~~~~~~~-------------~~~~~~~~~- 201 (341)
..+|+|... ..-||.|+-. ....+.+..|+|..+. |..-.++|. |...-....
T Consensus 67 ~dsckires-------nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kd 139 (445)
T KOG2891|consen 67 FDSCKIRES-------NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKD 139 (445)
T ss_pred ccceeeccc-------ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhh
Confidence 455666543 3567877643 3455666778887653 222233332 222100000
Q ss_pred ---ccccCCCceEEeCCCCCC------------CCHHHHHHHhcccCCCeeEEEEEec-----CCCCCC-----ccEE--
Q 019392 202 ---RTEACSDLSIFVGDLAPD------------VTDSILQETFSSKYPSVKGAKVIID-----SNTGRT-----KGYG-- 254 (341)
Q Consensus 202 ---~~~~~~~~~l~v~nlp~~------------~t~~~l~~~F~e~~G~v~~v~i~~~-----~~~~~~-----~g~a-- 254 (341)
-.......+||+.+||-. -+++.|+..| +.||.|..|.|+.- ..+|+. .||+
T Consensus 140 mdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~-eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g 218 (445)
T KOG2891|consen 140 MDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAF-EAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFG 218 (445)
T ss_pred hhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHH-HHhccceecCCcccchhHHHhcCccccceeeccccC
Confidence 011223458899888852 3678899999 59999999877532 123443 3333
Q ss_pred -------EEEeCCHHHHHHHHHHhCCee----ecCc----cEEEEecCCC
Q 019392 255 -------FVRFGDENERSRAMTEMNGVY----CSSR----PMRIDVATPK 289 (341)
Q Consensus 255 -------fV~F~~~~~A~~Al~~l~~~~----i~g~----~i~v~~a~~k 289 (341)
||.|.....-..|+..|.|.. ++++ .++|.|.+++
T Consensus 219 ~dlffeayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 219 GDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred cchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 455555555556666666643 3333 5666665554
No 207
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.48 E-value=0.24 Score=43.13 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=53.0
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc-EEEEec
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP-MRIDVA 286 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~-i~v~~a 286 (341)
+.=|.|.++++.-. ..|..+|+ +||+|.+.....+ | -+-+|.|.++-+|.+|| ..||+.|+|.. |-|+.-
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~-~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFS-RCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHH-hhCeeeeeecCCC---C---ceEEEEecchhHHHHhh-hhcCeeeccceEEeeeec
Confidence 34577778887654 45667885 9999998655422 2 28999999999999999 66999998754 456654
Q ss_pred CCC
Q 019392 287 TPK 289 (341)
Q Consensus 287 ~~k 289 (341)
..|
T Consensus 268 tDk 270 (350)
T KOG4285|consen 268 TDK 270 (350)
T ss_pred CCH
Confidence 444
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.62 E-value=0.064 Score=51.43 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=63.1
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
..+..++||+|+-..+..+-++.++. .+|.|.++.... |||..|..+.-+.+|+..|+-..++|..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~-~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILA-KSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHh-hCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 34556899999999999999999996 999999876553 89999999999999999999999999888877
Q ss_pred ec
Q 019392 285 VA 286 (341)
Q Consensus 285 ~a 286 (341)
..
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 64
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.50 E-value=0.64 Score=42.82 Aligned_cols=67 Identities=13% Similarity=0.269 Sum_probs=57.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc-CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~-G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
++.|.|-.+|..+|..||..|...+ -.|.+|++++|..- .+-.++|.|.+.++|....+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 8889999999999999999998865 47899999997532 3346789999999999999999999884
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.98 E-value=0.1 Score=46.13 Aligned_cols=77 Identities=6% Similarity=0.186 Sum_probs=55.3
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHHhcCCcEEEEEEecCC--CC-CccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 116 KTIWIGDLFHWMDETFLH---NCFSHTGQVVNVKVIRNKQ--TG-QSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~---~~f~~~G~v~~i~i~~~~~--~g-~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
.-+||-+|+....++++. +.|..||.|..|.+.++.. ++ ....-+||+|...++|..||...+|..+.++. +
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~--l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA--L 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh--h
Confidence 457888888776555443 5689999999998888662 11 11124899999999999999999998885433 4
Q ss_pred ccccc
Q 019392 190 RLNWA 194 (341)
Q Consensus 190 ~~~~~ 194 (341)
+..+.
T Consensus 156 ka~~g 160 (327)
T KOG2068|consen 156 KASLG 160 (327)
T ss_pred HHhhC
Confidence 44433
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.79 E-value=0.99 Score=30.26 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=42.7
Q ss_pred CCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 219 ~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.++-++|+..++ .|+ ..+| ..| .| | =||.|.|.++|+++.+..+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr-~y~-~~~I--~~d-~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLR-KYR-WDRI--RDD-RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHh-cCC-cceE--Eec-CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 567799999997 887 4434 344 22 3 589999999999999999998887776654
No 212
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.96 E-value=0.12 Score=47.75 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=62.4
Q ss_pred CCCCCCeEEEcCCCCCC-CHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 111 TNDETKTIWIGDLFHWM-DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~-te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
.....+.|-+.-.|... |-++|...|..||.|.+|.+-... -.|.|+|.+..+|-.|-. .++..| .++.+
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avl--nnr~i 438 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVL--NNRFI 438 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-ccccee--cCcee
Confidence 34566677777777664 567899999999999999886553 359999999999977774 688888 78899
Q ss_pred ccccccccC
Q 019392 190 RLNWATFSG 198 (341)
Q Consensus 190 ~~~~~~~~~ 198 (341)
++.|.....
T Consensus 439 Kl~whnps~ 447 (526)
T KOG2135|consen 439 KLFWHNPSP 447 (526)
T ss_pred EEEEecCCc
Confidence 999987643
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.67 E-value=0.39 Score=41.84 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=45.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCC
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~ 184 (341)
.=|-|-+++..-. .-|..+|.+||.|++.....+ | .+-+|.|.+.-+|.+||. .+|+.|++
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALs-kng~ii~g 258 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALS-KNGTIIDG 258 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhh-hcCeeecc
Confidence 3456667776543 456688999999987655422 2 589999999999999996 58888753
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.30 E-value=1.3 Score=29.70 Aligned_cols=48 Identities=15% Similarity=0.314 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCC
Q 019392 126 WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (341)
Q Consensus 126 ~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (341)
.++-++++..|..|+- .+|..|+ + || ||.|.+..+|+++....++..+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----EE-EEEECChHHHHHHHHhcCCCEE
Confidence 5788999999999963 2344554 2 44 8999999999999999888776
No 215
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.88 E-value=0.5 Score=38.86 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=43.3
Q ss_pred CHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC--CCCCCCCCCCccccccc
Q 019392 128 DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQPFRLNWAT 195 (341)
Q Consensus 128 te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--~~~~~~~~~~~~~~~~~ 195 (341)
..+.|+++|..++.+..+..++.- +-..|.|.+.+.|.+|...|+ +..+ .+..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEcc
Confidence 347899999999999888887754 568999999999999999998 7777 55557776664
No 216
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=86.59 E-value=1.2 Score=44.16 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 019392 264 RSRAMTEM 271 (341)
Q Consensus 264 A~~Al~~l 271 (341)
...|++.+
T Consensus 804 vt~ACEE~ 811 (1102)
T KOG1924|consen 804 VTAACEEL 811 (1102)
T ss_pred HHHHHHHH
Confidence 33444433
No 217
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=84.87 E-value=8 Score=35.39 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 112 NDETKTIWIGDLFHW-MDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~-~te~~l~~~f~~~----G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
...+..|-|-||.|+ +...+|...|+.| |.+..|.|.... |-.... |.+...| -.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse------------fGkeRm---~~e~vqG-----pp 202 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE------------FGKERM---AAEHVQG-----PP 202 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh------------hhHHHH---hHhhccC-----Cc
Confidence 457788999999987 7888998888765 577777777643 111111 1122222 11
Q ss_pred CCccccccccc------CCCCccccCCCceEEe-CCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeC
Q 019392 187 QPFRLNWATFS------GSDRRTEACSDLSIFV-GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259 (341)
Q Consensus 187 ~~~~~~~~~~~------~~~~~~~~~~~~~l~v-~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~ 259 (341)
+.|-....... ......+.+...-++| +.+..++.--.|+.+= +.+++. -||.|++.
T Consensus 203 rdif~~~d~~~ssqk~~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyq------lerlry----------YyAvvec~ 266 (622)
T COG5638 203 RDIFTPADNQPSSQKFGDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQ------LERLRY----------YYAVVECE 266 (622)
T ss_pred hhhccccccCcchhccCCccchhhhhcchhhhhhcccccchhHHHHHHHH------hhhhee----------EEEEEEec
Confidence 11110000000 0000011111123333 2233344444444332 233332 28999999
Q ss_pred CHHHHHHHHHHhCCeeecC--ccEEEEec
Q 019392 260 DENERSRAMTEMNGVYCSS--RPMRIDVA 286 (341)
Q Consensus 260 ~~~~A~~Al~~l~~~~i~g--~~i~v~~a 286 (341)
+.+.+......++|.++.. ..+.++|.
T Consensus 267 d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 267 DIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred cchhhHHHHhccCccccccccceeeeeec
Confidence 9999999999999988864 45555554
No 218
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=84.43 E-value=3.1 Score=36.35 Aligned_cols=84 Identities=8% Similarity=0.120 Sum_probs=63.3
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecC-------CCCCCccEEEEEeCCHHHHHHHH----HHhCC-
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-------NTGRTKGYGFVRFGDENERSRAM----TEMNG- 273 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~-------~~~~~~g~afV~F~~~~~A~~Al----~~l~~- 273 (341)
-..|.|.+.|+..+++-..+...|. +||.|++|.++.+. +..+......+.|-+.+.|..-. ..|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv-~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFV-KFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhh-ccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999996 99999999999775 11123346899999999887643 33332
Q ss_pred -eeecCccEEEEecCCCC
Q 019392 274 -VYCSSRPMRIDVATPKK 290 (341)
Q Consensus 274 -~~i~g~~i~v~~a~~k~ 290 (341)
+.+....|+|.|..-+.
T Consensus 92 K~~L~S~~L~lsFV~l~y 109 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNY 109 (309)
T ss_pred HHhcCCcceeEEEEEEec
Confidence 56778889998876543
No 219
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.64 E-value=3.1 Score=29.66 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=38.3
Q ss_pred EEEEeCCHHHHHHHHHHhC-CeeecCccEEEEec--CCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeE
Q 019392 254 GFVRFGDENERSRAMTEMN-GVYCSSRPMRIDVA--TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATI 330 (341)
Q Consensus 254 afV~F~~~~~A~~Al~~l~-~~~i~g~~i~v~~a--~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (341)
|+|+|.+.+-|.+.++.-. ...+++..+.|... ....-.+. .-......++|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~-------------------------qv~~~vs~rtV 55 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF-------------------------QVFSGVSKRTV 55 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE-------------------------EEEEcccCCEE
Confidence 6899999999999885332 24456666666543 22222211 11233467899
Q ss_pred EEcCCCCCC
Q 019392 331 FVGALDSDV 339 (341)
Q Consensus 331 ~V~nl~~~~ 339 (341)
.|.|||..+
T Consensus 56 lvsgip~~l 64 (88)
T PF07292_consen 56 LVSGIPDVL 64 (88)
T ss_pred EEeCCCCCC
Confidence 999999854
No 220
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=77.91 E-value=5.4 Score=38.13 Aligned_cols=15 Identities=7% Similarity=0.124 Sum_probs=8.0
Q ss_pred eCCHHHHHHHHHHhC
Q 019392 258 FGDENERSRAMTEMN 272 (341)
Q Consensus 258 F~~~~~A~~Al~~l~ 272 (341)
.++..-|+.|++++.
T Consensus 543 l~tl~kce~Alek~~ 557 (742)
T KOG4274|consen 543 LKTLQKCEIALEKLK 557 (742)
T ss_pred hhhhccccccHhhcc
Confidence 444555566665553
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.78 E-value=6 Score=34.36 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=38.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHH
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~ 169 (341)
-....-|+++||+.++--.||+..+.+.+.+ -+.|.... ..|-||++|-+...
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg----~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG----HFGKCFLHFGNRKG 379 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeec----CCcceeEecCCccC
Confidence 3444569999999999999999999987643 33444332 34779999987543
No 222
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=77.25 E-value=4.7 Score=30.06 Aligned_cols=47 Identities=13% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCCHHHHHHHhcccCCCeeEEEEEe----cCCCCCCccEEEEEeCCHHHHHH
Q 019392 219 DVTDSILQETFSSKYPSVKGAKVII----DSNTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 219 ~~t~~~l~~~F~e~~G~v~~v~i~~----~~~~~~~~g~afV~F~~~~~A~~ 266 (341)
.++.+||++-+++-|-.-.++.++. .-..|++.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 6888999998887776644444333 2345788999987 566666543
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=75.77 E-value=8.9 Score=27.08 Aligned_cols=58 Identities=10% Similarity=0.234 Sum_probs=41.5
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCCC-eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G~-v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l 271 (341)
-|+-.++...+..+|++.+...||. |.+|+.+.-+. +.. -|||.+..-.+|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~K--KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEK--KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcE--EEEEEeCCCCcHHHHHHhh
Confidence 4445677899999999999655764 77777665532 222 4999999999888876443
No 224
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.35 E-value=12 Score=25.59 Aligned_cols=57 Identities=18% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHhcC-----CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 125 HWMDETFLHNCFSHTG-----QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 125 ~~~te~~l~~~f~~~G-----~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
..++..+|..++...+ .|-+|.+.. .|+||+-... .|..+++.|++..+ .++.++++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~--~gk~v~ve 72 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKI--KGKKVRVE 72 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--S--SS----EE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCC--CCeeEEEE
Confidence 4678889999988764 445566654 4789988774 78889999999988 55555554
No 225
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=75.01 E-value=0.49 Score=44.65 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=56.6
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i 281 (341)
...+.||++|++++++-.+|..+++ .+..+..+-+-.+..-.....+++|+|+.--.-..|+.+||+..+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck-~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCK-GIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhc-cCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 3457899999999999999999997 88877776554332223444578999998888888888888876655443
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=74.28 E-value=18 Score=31.50 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=34.4
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCC-eeEEEEEecCCCCCCccEEEEEeCCH
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDE 261 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~-v~~v~i~~~~~~~~~~g~afV~F~~~ 261 (341)
...|+|+||+.++.-.||+..+. +.+- ..++.. .-+.|-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr-~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELR-KRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHH-hcCCCceeEee------ecCCcceeEecCCc
Confidence 45699999999999999999996 4443 333332 22456799999775
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.02 E-value=8.9 Score=35.03 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=45.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC-cEEEEEEecCCCCCccceEEEEecCHHHHHHHHH
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~-v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~ 175 (341)
-...|-|.++|.....+||...|+.|+. --+|+++.|. .||..|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 4457899999999999999999999974 2355566553 69999999999999995
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=72.22 E-value=13 Score=25.72 Aligned_cols=58 Identities=10% Similarity=0.215 Sum_probs=41.0
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
.-|+-.++...+..+|++.+...|| .|.+|+.+.-+. +.- -|||.+..-.+|.+.-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~K--KA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEK--KAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHHh
Confidence 3555577889999999999864566 366776655432 222 499999988888876544
No 229
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=69.75 E-value=9.3 Score=25.77 Aligned_cols=64 Identities=9% Similarity=0.149 Sum_probs=45.3
Q ss_pred HHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCC
Q 019392 223 SILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (341)
Q Consensus 223 ~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~ 290 (341)
++|.+.|. ..| .|.+|.-+..+.++...-.-||+++...+..++ ++=+.+++..|+|+....+.
T Consensus 2 ~~I~~~L~-~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELK-DQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHH-HcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCCC
Confidence 46777775 555 477777777766677777889998877664443 45577888999998766554
No 230
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=69.54 E-value=12 Score=27.38 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHhcccCCCeeEEEEEecC----CCCCCccEEEEEeCCHHHHHH
Q 019392 218 PDVTDSILQETFSSKYPSVKGAKVIIDS----NTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~v~i~~~~----~~~~~~g~afV~F~~~~~A~~ 266 (341)
.+.+..+|++.+...|+.=.+..++..- ..+++.|||.| |+|.+.|.+
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 3678888988887677754444444322 33677788876 556665544
No 231
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=68.95 E-value=5.9 Score=29.45 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHhcc--cCCCeeEEEEEecCCCCCCccEEEEEeCCHH
Q 019392 216 LAPDVTDSILQETFSS--KYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (341)
Q Consensus 216 lp~~~t~~~l~~~F~e--~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~ 262 (341)
-|+.+|..+|+++|+| .|-.|.+-.+.+|.--.-+-..||.-|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 4678999999999985 3444544444444222223347888887653
No 232
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=68.71 E-value=8.7 Score=30.24 Aligned_cols=109 Identities=12% Similarity=-0.041 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHh-cCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccccccCCCCc-c
Q 019392 126 WMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR-T 203 (341)
Q Consensus 126 ~~te~~l~~~f~~-~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 203 (341)
..+-..|...+.. ++....+.+..-. .++..+.|.+.+++.++++ .....+ .+..+.+........... .
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~-~~p~~~--~~~~~~l~~W~~~~~~~~~~ 99 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLK-GGPWNF--NGHFLILQRWSPDFNPSEVK 99 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEe-cccccc--cccchhhhhhcccccccccc
Confidence 3566677666654 3433344443321 1689999999999999885 233334 334444433322111111 1
Q ss_pred ccCCCceEEeCCCCCC-CCHHHHHHHhcccCCCeeEEEEEe
Q 019392 204 EACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVII 243 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~-~t~~~l~~~F~e~~G~v~~v~i~~ 243 (341)
-.....=|.|.|||.. .+++-|+.+.+ .+|.+.++....
T Consensus 100 ~~~~~vWVri~glP~~~~~~~~~~~i~~-~iG~~i~vD~~t 139 (153)
T PF14111_consen 100 FEHIPVWVRIYGLPLHLWSEEILKAIGS-KIGEPIEVDENT 139 (153)
T ss_pred eeccchhhhhccCCHHHhhhHHHHHHHH-hcCCeEEEEcCC
Confidence 1112234667899987 67777788886 999999876543
No 233
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=68.11 E-value=1.6 Score=41.36 Aligned_cols=70 Identities=7% Similarity=0.065 Sum_probs=53.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (341)
..+|+|+++|++++++.++|..+++.+--+..+-+..+..-.+...+.+|.|+-.-.-..|+..||+..+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 4567899999999999999999999886666665554433344556788999877777777777787766
No 234
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.32 E-value=11 Score=30.64 Aligned_cols=77 Identities=10% Similarity=0.229 Sum_probs=50.4
Q ss_pred eEEeCCCCCCCC-H----HHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCc-cEEE
Q 019392 210 SIFVGDLAPDVT-D----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-PMRI 283 (341)
Q Consensus 210 ~l~v~nlp~~~t-~----~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~-~i~v 283 (341)
.+.+.+|+..+- + .....+|. .|.+..-..+++ +.++.-|.|.+.+.|..|...+++..+.|+ .+++
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFr-q~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFR-QINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHh-hhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 455566665432 2 22334443 444433333332 334677899999999999999999999988 8888
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
-++.+.....
T Consensus 85 yfaQ~~~~~~ 94 (193)
T KOG4019|consen 85 YFAQPGHPES 94 (193)
T ss_pred EEccCCCccc
Confidence 8888765443
No 235
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.81 E-value=7.3 Score=29.41 Aligned_cols=45 Identities=18% Similarity=0.422 Sum_probs=26.5
Q ss_pred CCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCH-HHHHHHH
Q 019392 220 VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE-NERSRAM 268 (341)
Q Consensus 220 ~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~-~~A~~Al 268 (341)
.+.++|++.|+ .|..++ ++.+.++. -++|+++|+|.+. .--..|+
T Consensus 29 ~~~~~l~~~l~-~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLA-EFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHH-H---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHH-hcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 45588999997 799775 66666643 5789999999764 3334444
No 236
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=61.44 E-value=19 Score=35.33 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=53.2
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
+||+.+--..-+..-+..++. .++.+...+++..-..+...+-++++|.....+..|. .|-++.+..+.++
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~-~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~k 583 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSE-KKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLK 583 (681)
T ss_pred ceecccccccCCCcchhhCcc-cccccccceeeccccCCCcCCchhhhhcCCcchhhhh-cccccccccccee
Confidence 788888777777888888884 8899998888877777766667999999888886665 5555555444443
No 237
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=58.60 E-value=62 Score=31.53 Aligned_cols=86 Identities=12% Similarity=0.238 Sum_probs=54.6
Q ss_pred ceEEEEecCHHHHHHHHHHhCCCCCCCCCC---Cccc------ccccccCCCCc-----cccCCCceEEeCCCCCCCCHH
Q 019392 158 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ---PFRL------NWATFSGSDRR-----TEACSDLSIFVGDLAPDVTDS 223 (341)
Q Consensus 158 g~afV~f~~~~~A~~Al~~l~~~~~~~~~~---~~~~------~~~~~~~~~~~-----~~~~~~~~l~v~nlp~~~t~~ 223 (341)
--||+++.++..-+-..+.|+...+..... -.+. ...++....+. .+......+|+.+|..++.++
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 369999999988887777777665522110 0011 11111111111 334456789999999999888
Q ss_pred HHHHHhcccCCCeeEEEEEec
Q 019392 224 ILQETFSSKYPSVKGAKVIID 244 (341)
Q Consensus 224 ~l~~~F~e~~G~v~~v~i~~~ 244 (341)
-=.++.. ....+++++|++.
T Consensus 317 VQ~~~ir-sipGlEna~i~rp 336 (621)
T COG0445 317 VQEQIIR-SIPGLENAEILRP 336 (621)
T ss_pred HHHHHHH-hCcccccceeecc
Confidence 7777775 7777999998864
No 238
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=58.35 E-value=22 Score=27.44 Aligned_cols=46 Identities=17% Similarity=0.414 Sum_probs=28.7
Q ss_pred CCCHHHHHHHhcccCC-CeeEEEEE----ecCCCCCCccEEEEEeCCHHHHH
Q 019392 219 DVTDSILQETFSSKYP-SVKGAKVI----IDSNTGRTKGYGFVRFGDENERS 265 (341)
Q Consensus 219 ~~t~~~l~~~F~e~~G-~v~~v~i~----~~~~~~~~~g~afV~F~~~~~A~ 265 (341)
..+..+|++.+...|+ .=.++.++ ..-..|++.|||.| |+|.+.|.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 6788999988877788 32222222 22234678888877 55555544
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.54 E-value=57 Score=30.08 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=44.4
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCC-eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~-v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
-...|-|.++|.....+||...|. .|+. --+|.++-|. .||-.|.+...|..||-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~-~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFE-TYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHH-HhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 445789999999999999999996 8875 3345555442 699999999999999954
No 240
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.39 E-value=14 Score=27.83 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=29.4
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCH-HHHHHHH
Q 019392 117 TIWIGDLFHW---------MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR-AAAEKVL 174 (341)
Q Consensus 117 ~l~v~nLp~~---------~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~-~~A~~Al 174 (341)
++.|-|++.+ .+.+.|++.|..|.++ +++.+.++. -..|+++|+|... ..-..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 4566666533 3567899999999887 466666652 4668999999764 3344444
No 241
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.00 E-value=32 Score=22.63 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCcEEEEEE
Q 019392 130 TFLHNCFSHTGQVVNVKVI 148 (341)
Q Consensus 130 ~~l~~~f~~~G~v~~i~i~ 148 (341)
.+||++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999998665543
No 242
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=52.58 E-value=59 Score=22.93 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=41.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHh
Q 019392 118 IWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (341)
Q Consensus 118 l~v~nLp~~~te~~l~~~f~~-~G-~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 177 (341)
-|+-.++...+-.+|++.++. || .|.+|+...-+ . ...-|||.+...+.|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhh
Confidence 344456788999999999987 55 67777776654 2 2246999999999888776543
No 243
>PRK11901 hypothetical protein; Reviewed
Probab=50.30 E-value=32 Score=30.89 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=41.1
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEE--EeCCHHHHHHHHHHhCC
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV--RFGDENERSRAMTEMNG 273 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV--~F~~~~~A~~Al~~l~~ 273 (341)
...+|-|..+ -+++.|..|.. .++ +..+++.....+|+.. |..| .|.+.++|++|+..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~-~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAK-KQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHH-HcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 3446666554 45778888875 665 5667766655555553 5433 69999999999988753
No 244
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=49.70 E-value=3.7 Score=41.07 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=24.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhcC
Q 019392 112 NDETKTIWIGDLFHW-MDETFLHNCFSHTG 140 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~-~te~~l~~~f~~~G 140 (341)
.-.+|||+|..||.+ .++++|.++|.+.+
T Consensus 205 ~~ssRTvlis~LP~~~~~~e~L~~~~~kl~ 234 (827)
T COG5594 205 NLSSRTVLISGLPSELRSDEELKELFDKLK 234 (827)
T ss_pred CCCCceEEeecCChhhcCchhHHHHHhhcC
Confidence 457899999999976 57778999999865
No 245
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=49.14 E-value=58 Score=23.93 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=29.7
Q ss_pred HHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 019392 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (341)
Q Consensus 223 ~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al 268 (341)
.+|..+++ ..| |.+..|..|..+ ..=||++++.|.+..-++|
T Consensus 27 PE~~a~lk-~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLK-EAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHH-HcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 45677776 787 888888877543 3459999999666655554
No 246
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=49.03 E-value=7.7 Score=35.49 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=51.3
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHHHh--cCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHH
Q 019392 114 ETKTIWIGDLFHWMDET--------FLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~--------~l~~~f~~--~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~ 175 (341)
..+.+|+.+.....+.+ ++...|.. .+++..+...++.....++|..|++|+....+.+.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 44667888888665555 89999998 6788889988887777888999999999999998874
No 247
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=48.39 E-value=50 Score=24.43 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHhcccCCCeeEEEEEecC----CCCCCccEEEEEeCCHHHHHH
Q 019392 218 PDVTDSILQETFSSKYPSVKGAKVIIDS----NTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~v~i~~~~----~~~~~~g~afV~F~~~~~A~~ 266 (341)
.+.+..+|++.+.+.+|.=.++.++..- ..++++|||-| |.|.+.|..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 4678899998888788875555444332 23677788876 566666543
No 248
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=47.13 E-value=55 Score=23.05 Aligned_cols=48 Identities=8% Similarity=0.253 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhcccCCCeeE----EEEEecCCCCCCccEEEEEeCCHHHHHH
Q 019392 218 PDVTDSILQETFSSKYPSVKG----AKVIIDSNTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~----v~i~~~~~~~~~~g~afV~F~~~~~A~~ 266 (341)
...+..+|++.+...|+.=.+ ..|...-..+.+.|||.| |+|.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 467788888887756664222 223333344667788877 556665543
No 249
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=46.95 E-value=29 Score=31.75 Aligned_cols=69 Identities=13% Similarity=0.272 Sum_probs=46.8
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCee-EEEEEecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCeee
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVK-GAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~-~v~i~~~~~~--~~~~g~afV~F~~~~~A~~Al~~l~~~~i 276 (341)
..+++.|.+||+.+++++|.+-+. .|-.=. ...+.....+ ..-.+.|||.|...++...-.+.++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~-p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQIN-PFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcC-CCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 345799999999999999998885 654322 1222211000 11246799999999998877777787554
No 250
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=46.23 E-value=48 Score=32.05 Aligned_cols=11 Identities=0% Similarity=-0.094 Sum_probs=5.4
Q ss_pred EEEcCCCCCCC
Q 019392 118 IWIGDLFHWMD 128 (341)
Q Consensus 118 l~v~nLp~~~t 128 (341)
+...|.+..+.
T Consensus 345 ~k~vnmp~~~q 355 (742)
T KOG4274|consen 345 LKFVNMPMVVQ 355 (742)
T ss_pred hhhccCCcccc
Confidence 44445555443
No 251
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=45.76 E-value=36 Score=22.95 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=43.7
Q ss_pred HHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCC
Q 019392 223 SILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (341)
Q Consensus 223 ~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~ 290 (341)
++|.+.|. .+| .+..|.-+..+.++.+--+-||+.....+-.. .|+=+.+++++|.|+....++
T Consensus 2 ~~I~~~L~-~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALK-DIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHH-HcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 35677775 666 47777777776666666778888876644443 455577889999988655443
No 252
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=45.17 E-value=61 Score=25.49 Aligned_cols=57 Identities=11% Similarity=0.221 Sum_probs=38.1
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCC-eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~-v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~ 269 (341)
.-|+.-++...+..+|++.+...|+. |.+|..+.-+. |.- -|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHH
Confidence 35555677899999999988645663 66666554322 322 49999987777665443
No 253
>PRK11901 hypothetical protein; Reviewed
Probab=44.92 E-value=96 Score=27.94 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=44.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEE--EecCHHHHHHHHHHhCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFV--EFYSRAAAEKVLQSYSGSL 181 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV--~f~~~~~A~~Al~~l~~~~ 181 (341)
+....+|-|..+ .+++.|..|...++ +.++++.....+|+. .|..| .|.+.++|..|++.|-..+
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 455566666654 46888999988876 456667665544432 34433 5999999999999876544
No 254
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=44.28 E-value=28 Score=31.42 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=25.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCC
Q 019392 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (341)
Q Consensus 254 afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~ 291 (341)
|||+|++..+|..|++.+....- +.+++..|-..++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCccc
Confidence 79999999999999986654443 4456666555443
No 255
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.10 E-value=1.2e+02 Score=23.99 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=39.3
Q ss_pred ceEEeCCCCCCCCHHHHHHHhccc--CCCeeEEEEEecCCC---------CCCcc-EEEEEeCCHHH
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSK--YPSVKGAKVIIDSNT---------GRTKG-YGFVRFGDENE 263 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~--~G~v~~v~i~~~~~~---------~~~~g-~afV~F~~~~~ 263 (341)
.+|++.-+...+++++.++..+.. -+++.+|.+-+.++. ...+. |-+|.|++-..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 589999999999999999998633 455677776654332 22334 88899987554
No 256
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=41.43 E-value=61 Score=21.37 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=15.8
Q ss_pred HHHHHHhcccCCCeeEEEEE
Q 019392 223 SILQETFSSKYPSVKGAKVI 242 (341)
Q Consensus 223 ~~l~~~F~e~~G~v~~v~i~ 242 (341)
.+||++|+ ..|+|.-+.+-
T Consensus 9 ~~iR~~fs-~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFS-QLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHH-hcCcEEEEEEc
Confidence 67999998 99999876654
No 257
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=41.11 E-value=66 Score=27.00 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCCHHHHHH---HHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 126 WMDETFLHN---CFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 126 ~~te~~l~~---~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
.+++++|+. ....||. ...+++|+.++..+-..|+.=.|.+....|++.+....+.
T Consensus 38 ~i~~~~lk~F~k~AkKyGV--~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~ 96 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYGV--DYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLK 96 (204)
T ss_pred ecCHhhHHHHHHHHHHcCC--ceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhh
Confidence 345555554 4678883 5556777766655567777778899999999988877663
No 258
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=40.29 E-value=38 Score=29.49 Aligned_cols=70 Identities=20% Similarity=0.393 Sum_probs=45.6
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHHHhcCCcEEEEEEe-cC----CCCCc-----cceE---------E
Q 019392 113 DETKTIWIGDLFHW------------MDETFLHNCFSHTGQVVNVKVIR-NK----QTGQS-----EGYG---------F 161 (341)
Q Consensus 113 ~~~~~l~v~nLp~~------------~te~~l~~~f~~~G~v~~i~i~~-~~----~~g~~-----~g~a---------f 161 (341)
+-..||++.+||-. -+++.|+..|+.||.|..+.|.. |+ -+|+. .||+ |
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 44568999888832 36788999999999998876642 22 23433 2333 3
Q ss_pred EEecCHHHHHHHHHHhCCCCC
Q 019392 162 VEFYSRAAAEKVLQSYSGSLM 182 (341)
Q Consensus 162 V~f~~~~~A~~Al~~l~~~~~ 182 (341)
|.|-....-..|+..|.|..+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 455555566667777777655
No 259
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.28 E-value=33 Score=23.25 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.2
Q ss_pred EEEEEeCCHHHHHHHHHHhCCeee
Q 019392 253 YGFVRFGDENERSRAMTEMNGVYC 276 (341)
Q Consensus 253 ~afV~F~~~~~A~~Al~~l~~~~i 276 (341)
+.+|.|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999988875433
No 260
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=39.49 E-value=61 Score=29.18 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=35.4
Q ss_pred EEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhc
Q 019392 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230 (341)
Q Consensus 160 afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 230 (341)
|||.|++..+|..|++.+....- ..+++..+. +...|.=.||..+..+..+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----~~~~v~~AP-----------eP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----NSWRVSPAP-----------EPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----CCceEeeCC-----------CcccccccccCCChHHHHHHHHHH
Confidence 79999999999999986544322 222333322 222355568877777777766654
No 261
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=39.29 E-value=31 Score=31.51 Aligned_cols=70 Identities=10% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC-cEEEEEEecCCC--CCccceEEEEecCHHHHHHHHHHhCCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~-v~~i~i~~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (341)
...+.|.|.+||...++.+|.+-...+-. +....+.....+ ..-.+.|||.|...++.......++|..+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45567999999999999999888777542 222222211111 11246799999999998888888888765
No 262
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=38.46 E-value=17 Score=33.38 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCceEEeCCCCCCCCHH--------HHHHHhccc--CCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 019392 207 SDLSIFVGDLAPDVTDS--------ILQETFSSK--YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~--------~l~~~F~e~--~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~ 269 (341)
..+.+|+.+++...+.+ ++...|. . .+.+..|+.-++.....++|..|++|+..+.|.+++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p-~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFP-PHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCC-CcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34578888888765555 8999995 7 6778888888887677889999999999999999884
No 263
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.74 E-value=1.4e+02 Score=21.29 Aligned_cols=44 Identities=9% Similarity=-0.041 Sum_probs=31.7
Q ss_pred HHHHHHHHhcC-CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHh
Q 019392 130 TFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (341)
Q Consensus 130 ~~l~~~f~~~G-~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 177 (341)
+.++++++.+| +++++.+..... --...+++.|.+.|.++.-.+
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~y----D~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGEY----DFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCCC----CEEEEEEcCCHHHHHHHHHHH
Confidence 45677777765 788888776543 367889999999888766433
No 264
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=37.71 E-value=47 Score=27.04 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=37.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc-CCcEEEEEEecCC-CCCccceEEEEecCHHHHHHHHHH
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQ-TGQSEGYGFVEFYSRAAAEKVLQS 176 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~-G~v~~i~i~~~~~-~g~~~g~afV~f~~~~~A~~Al~~ 176 (341)
.+++|.. .|++.|.++..-- |.+..+.+.+... ....+|-.||.|.+.+.|...++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3455554 5566555553321 6777777665431 125778999999999999887754
No 265
>PF14893 PNMA: PNMA
Probab=37.56 E-value=35 Score=31.02 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=45.3
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEe---cCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII---DSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~---~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
...+.|.|.+||.++++++|.+.+...+-.+-.++|.. .++.+ .+ -|+|+|...-+-...=..+ .-.|...+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~~-aalve~~e~~n~~~iP~~i---~g~gg~W~ 90 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-AK-AALVEFAEDVNYSLIPREI---PGKGGPWR 90 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-cc-eeeeecccccchhhCchhc---CCCCCceE
Confidence 34567999999999999999988753233333444331 11211 22 5889987544422221111 12355666
Q ss_pred EEecCCCCC
Q 019392 283 IDVATPKKA 291 (341)
Q Consensus 283 v~~a~~k~~ 291 (341)
|-+..+..+
T Consensus 91 Vv~~p~~~D 99 (331)
T PF14893_consen 91 VVFKPPAPD 99 (331)
T ss_pred EEecCCCCC
Confidence 666554433
No 266
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.85 E-value=1.4e+02 Score=24.12 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=41.4
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
..++.| +|+..+.++.|.++. |-+|.|.+. +.. .-.+-|-+.+...+||+.+.
T Consensus 112 ~~~iRv-~l~~~i~~erl~ei~-E~~gvI~Ef----ee~------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 112 FETIRV-KLKKPIQEERLQEIS-EWHGVIFEF----EED------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ceeEEE-ecCccchHHHHHHHH-HHhceeEEe----cCC------cEEEEeccHHHHHHHHHHHH
Confidence 345666 899999999999999 599977765 212 24788999999999998764
No 267
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=36.14 E-value=53 Score=30.33 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=3.7
Q ss_pred CCCCCccchh
Q 019392 37 WVPPHQQQWM 46 (341)
Q Consensus 37 ~q~q~qqq~~ 46 (341)
.|++...|.+
T Consensus 394 ~qpp~~~q~~ 403 (462)
T KOG2199|consen 394 VQPPGRAQYP 403 (462)
T ss_pred CCCCcccccC
Confidence 3333333333
No 268
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=36.08 E-value=21 Score=29.01 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=48.5
Q ss_pred CCCeEEEcCCCCCCCH-H----HHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 114 ETKTIWIGDLFHWMDE-T----FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te-~----~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
-..++.+.+++..+-. . ...++|..|.+.....+++.. +..-|.|.+++.|..|...+++..|.+.. .
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~-~ 81 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKN-E 81 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCc-e
Confidence 3455777788755322 2 234556656554444444433 67789999999999999999999996543 4
Q ss_pred ccccccc
Q 019392 189 FRLNWAT 195 (341)
Q Consensus 189 ~~~~~~~ 195 (341)
+++-++.
T Consensus 82 ~k~yfaQ 88 (193)
T KOG4019|consen 82 LKLYFAQ 88 (193)
T ss_pred EEEEEcc
Confidence 4544444
No 269
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.80 E-value=60 Score=31.51 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=31.8
Q ss_pred ceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccccc
Q 019392 158 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (341)
Q Consensus 158 g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (341)
-||.|+|.+.+.|....+.++|..+...+..+-+.|-.
T Consensus 269 YyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 269 YYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred EEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 48999999999999999999999997777666665543
No 270
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.37 E-value=40 Score=28.69 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEE
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV 145 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i 145 (341)
......+||+-|+|..+|++.|.++.+.+|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34577889999999999999999999999855443
No 271
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.35 E-value=33 Score=29.17 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=27.7
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA 239 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v 239 (341)
....+||+-|+|...+++-|.++.+ .+|.+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vs-qlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVS-QLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHH-Hhhhhhhe
Confidence 3456899999999999999999998 88866544
No 272
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=33.67 E-value=1.5e+02 Score=20.08 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHh
Q 019392 130 TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (341)
Q Consensus 130 ~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 177 (341)
++|++.+..+| +...++.... .| ++.|+-+.+.+.++++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG-~G---~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG-GG---PTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS-SS---SEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC-CC---CeEEEEECCHHHHHHHHHHH
Confidence 35667778888 4555555431 12 57888888999988888765
No 273
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=33.26 E-value=1.9e+02 Score=28.95 Aligned_cols=69 Identities=6% Similarity=0.121 Sum_probs=49.9
Q ss_pred eEEeCCCC--CCCCHHHHHHHhcccCCCee-----EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 210 SIFVGDLA--PDVTDSILQETFSSKYPSVK-----GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 210 ~l~v~nlp--~~~t~~~l~~~F~e~~G~v~-----~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
++|| |+. ..++..+|..++. .-+.|. .|.|.-+ |.||+.. .+.|.+.+..|++..+.|+.|.
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~-~~~~~~~~~ig~i~i~~~--------~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIA-NEGDISSRYIGNIKLFAS--------HSTIELP-KGMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHH-hhcCCChhhCCcEEEeCC--------ceEEEcC-hhhHHHHHHHhccccccCCceE
Confidence 4555 443 3578888888886 444443 4555532 8999985 5668899999999999999999
Q ss_pred EEecCCC
Q 019392 283 IDVATPK 289 (341)
Q Consensus 283 v~~a~~k 289 (341)
|+.+...
T Consensus 557 ~~~~~~~ 563 (629)
T PRK11634 557 MQLLGDA 563 (629)
T ss_pred EEECCCC
Confidence 9987533
No 274
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=32.63 E-value=1.8e+02 Score=20.49 Aligned_cols=58 Identities=10% Similarity=0.073 Sum_probs=35.7
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCCee--EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPSVK--GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~v~--~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
.++|..++..++-++|.+.+.+.|.-.. .+.+..--+.|. .|.|.+.++-..|++.+.
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGD-----p~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGD-----PCTISSQMELEEAFRLYE 69 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCC-----ceeecCHHHHHHHHHHHH
Confidence 4777788888888776554443333222 233332113344 388999999999997764
No 275
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=31.76 E-value=1.8e+02 Score=22.58 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=38.0
Q ss_pred HHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecC
Q 019392 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (341)
Q Consensus 222 ~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~ 287 (341)
|.+|+..| -|.-+..+.++... ...-+-+..+.+.. ...++..+.++.+.++.|.|..-.
T Consensus 2 e~~lkAa~--l~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAY--LYNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHH--HHHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 56666666 35545555555431 22235556665555 445677888999999999998653
No 276
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.43 E-value=81 Score=22.08 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHhCCee
Q 019392 250 TKGYGFVRFGDENERSRAMTEMNGVY 275 (341)
Q Consensus 250 ~~g~afV~F~~~~~A~~Al~~l~~~~ 275 (341)
-+||-|||=.+..+..+|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 78999999999999999998776543
No 277
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=28.79 E-value=1e+02 Score=21.78 Aligned_cols=44 Identities=11% Similarity=0.308 Sum_probs=28.7
Q ss_pred eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee-c-CccEEEEec
Q 019392 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-S-SRPMRIDVA 286 (341)
Q Consensus 236 v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i-~-g~~i~v~~a 286 (341)
|.+|+|..-...++-+|||=|+|.+ .+ .+++..+ . .+.+.|.+-
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd------~f-~I~~ikVieg~~GlFVaMP 48 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD------CF-VIHDIKVIEGEKGLFVAMP 48 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT------TE-EEEEEEEEEETTEEEEE--
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC------EE-EEEeEEEEECCCCcEEECC
Confidence 6788887766668999999999987 22 4455333 2 344666553
No 278
>PRK10905 cell division protein DamX; Validated
Probab=28.17 E-value=1.1e+02 Score=27.38 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=40.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceE--EEEecCHHHHHHHHHHhCCCC
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYG--FVEFYSRAAAEKVLQSYSGSL 181 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~a--fV~f~~~~~A~~Al~~l~~~~ 181 (341)
...+|-|+-+ .+++.|++|..++| +....+.....+|+. .|. +=.|.+.++|++|++.|-..+
T Consensus 246 ~~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 246 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred CceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 4455555554 46788888988886 455555554444432 233 335999999999999876543
No 279
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=27.75 E-value=52 Score=31.15 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=5.8
Q ss_pred eEEEcCCCCCCCC
Q 019392 329 TIFVGALDSDVRC 341 (341)
Q Consensus 329 ~l~V~nl~~~~t~ 341 (341)
|..|+--|+.+||
T Consensus 651 cFvVgkePPKIsn 663 (775)
T KOG1151|consen 651 CFVVGKEPPKISN 663 (775)
T ss_pred eeecCCCCCcccc
Confidence 3444444444443
No 280
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.51 E-value=1.7e+02 Score=18.58 Aligned_cols=54 Identities=13% Similarity=-0.010 Sum_probs=39.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCH----HHHHHHHHH
Q 019392 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR----AAAEKVLQS 176 (341)
Q Consensus 117 ~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~----~~A~~Al~~ 176 (341)
|+.|.|+.-.--...|.+.+...-.|.++.+-... +.+-|.|... +....+|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 57777777777778899999988778888886654 5688888754 455555544
No 281
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=27.02 E-value=2.6e+02 Score=20.61 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHH
Q 019392 131 FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174 (341)
Q Consensus 131 ~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al 174 (341)
+|..+++.+| |.+..|..|..+ ..=||++++.|.++.-+++
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 5667888888 667777776533 3369999999766655554
No 282
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=25.99 E-value=1.1e+02 Score=21.50 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCCCccceEEEEecC
Q 019392 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (341)
Q Consensus 141 ~v~~i~i~~~~~~g~~~g~afV~f~~ 166 (341)
.|.++++..-...|+-++||-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46788888876668999999999987
No 283
>PF14893 PNMA: PNMA
Probab=25.83 E-value=52 Score=29.88 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=42.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHh----cCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSH----TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~----~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
-+..+.|.|.+||.++++++|.+.+.. .|...-+.-+..+..+ ..-|+|+|...-.-. +-=..|.|.+.
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~~n~~-----~iP~~i~g~gg 87 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAEDVNYS-----LIPREIPGKGG 87 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccccchh-----hCchhcCCCCC
Confidence 356788999999999999999888654 4432211111111111 246788887632211 11123455566
Q ss_pred Ccccccc
Q 019392 188 PFRLNWA 194 (341)
Q Consensus 188 ~~~~~~~ 194 (341)
..+|-+-
T Consensus 88 ~W~Vv~~ 94 (331)
T PF14893_consen 88 PWRVVFK 94 (331)
T ss_pred ceEEEec
Confidence 6665443
No 284
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=25.62 E-value=5.1e+02 Score=23.53 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=59.6
Q ss_pred CCCCCCCHHHHHHH----HHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccccccc
Q 019392 122 DLFHWMDETFLHNC----FSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS 197 (341)
Q Consensus 122 nLp~~~te~~l~~~----f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~ 197 (341)
|.+++-+-+-++.. +++||--.++++.+-..- .+|-+-|.|.-.-. +.+....+...++..++
T Consensus 119 ~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~y--P~GgGeV~~~v~p~-----~~l~~i~l~~~g~i~~i------ 185 (326)
T cd00874 119 DVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFY--PRGGGEVVLTVEPS-----KLLPPLLLEERGEIEKI------ 185 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcC--CCCCEEEEEEEecc-----cCCCcceeecCCCeEEE------
Confidence 45666667766654 467887677777664322 33445555543211 01111111111111111
Q ss_pred CCCCccccCCCceEEeCCCCCCCCHHHH---HHHhccc-CCCeeEEEEEecCCCCCCccEEEEEeC
Q 019392 198 GSDRRTEACSDLSIFVGDLAPDVTDSIL---QETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFG 259 (341)
Q Consensus 198 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l---~~~F~e~-~G~v~~v~i~~~~~~~~~~g~afV~F~ 259 (341)
.-..++.+||..+.+..+ ++.++ + ++ .++.+..+...+.+.|++.+-+.
T Consensus 186 ----------rg~~~~~~l~~~va~r~~~~a~~~L~-~~~~--~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 186 ----------RGISHAANLPPHVAERQAEAAAALLR-KALG--LQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred ----------EEEEEEccCCHHHHHHHHHHHHHHHh-hccC--CCeEEEEEecCCCCCCEEEEEEE
Confidence 115778899998887665 45553 4 33 34555555455778888766554
No 285
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=25.31 E-value=3.2e+02 Score=20.99 Aligned_cols=70 Identities=6% Similarity=0.031 Sum_probs=45.1
Q ss_pred ceEEeCCCCCC---CCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 209 LSIFVGDLAPD---VTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 209 ~~l~v~nlp~~---~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
..|.|+..... .+-..+...+. .-| .++++..-. + -..|.|.+.++-.+|.+.|....-++..|.+.
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~-~~gI~~ksi~~~~--~------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLD-ANGIHIKSITPEN--D------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHH-HCCCCcceEEeeC--C------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 35666655333 56678888885 444 244443321 1 48899999999999998888655455566655
Q ss_pred ecC
Q 019392 285 VAT 287 (341)
Q Consensus 285 ~a~ 287 (341)
.+.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 544
No 286
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=25.16 E-value=68 Score=30.86 Aligned_cols=42 Identities=17% Similarity=0.417 Sum_probs=35.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCC
Q 019392 251 KGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 251 ~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~ 292 (341)
..|+++.|++.+.+.+|+..++|....+..+++..+......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~ 104 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGS 104 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccccc
Confidence 358999999999999999999999988888888877666544
No 287
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=24.82 E-value=1.9e+02 Score=20.25 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=25.3
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCC----HHHHHHHHHHhCCeeecCccEEEE
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD----ENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~----~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
|.+++|.++-....=.++ + .-..|-++.|. |..| .|||.|+. .+...++++.+....+..+.|.|.
T Consensus 3 lkfg~It~eeA~~~QYeL-s-k~~~vyRvFiN-----gYar-~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEAMVKQYEL-S-KNEAVYRVFIN-----GYAR-NGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTTHHHHHTT-T-TTTTB-----------TTSS---EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHHHHHHHHh-h-cccceeeeeec-----cccc-ceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 455666655444333333 2 45556665543 4455 59999974 477788888888888888877764
No 288
>CHL00030 rpl23 ribosomal protein L23
Probab=24.28 E-value=2.3e+02 Score=20.44 Aligned_cols=35 Identities=9% Similarity=-0.007 Sum_probs=24.9
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCC-eeEEEEEec
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIID 244 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~-v~~v~i~~~ 244 (341)
.-|+--++.+.+..+|++.+...||. |.+|..+.-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 35555778899999999999645764 666665543
No 289
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.27 E-value=66 Score=27.07 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCH
Q 019392 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (341)
Q Consensus 223 ~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~ 261 (341)
|+|.+.|-..||.-. .+..+|-|+||+|++.
T Consensus 89 edL~~EF~~~~~~~~--------~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNI--------IQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhccccc--------CCccCCCeeEEehhHH
Confidence 566666644666321 2335677999999875
No 290
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.25 E-value=1.6e+02 Score=32.09 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHhC
Q 019392 259 GDENERSRAMTEMN 272 (341)
Q Consensus 259 ~~~~~A~~Al~~l~ 272 (341)
.+.++|.++|+.+.
T Consensus 1070 tD~eka~~aLr~lV 1083 (1355)
T PRK10263 1070 TDMKDAANALRWCV 1083 (1355)
T ss_pred cCHHHHHHHHHHHH
Confidence 46677777776554
No 291
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.98 E-value=1.2e+02 Score=21.84 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCCCccceEEEEecC
Q 019392 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (341)
Q Consensus 141 ~v~~i~i~~~~~~g~~~g~afV~f~~ 166 (341)
.|.++++..-...|+-++||-|.|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46788887765568899999999988
No 292
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.96 E-value=1.3e+02 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCCCCccEEEEEeCC
Q 019392 236 VKGAKVIIDSNTGRTKGYGFVRFGD 260 (341)
Q Consensus 236 v~~v~i~~~~~~~~~~g~afV~F~~ 260 (341)
|++|+|..-...|+-|+||=|+|.+
T Consensus 3 ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 3 VTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred EEEEEEEEeCCCCcEEEEEEEEECC
Confidence 6777776654568889999999987
No 293
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=23.68 E-value=5.7e+02 Score=23.40 Aligned_cols=115 Identities=11% Similarity=0.194 Sum_probs=59.8
Q ss_pred cCCCCCCCHHHHHHH----HHhcCCc---EEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 121 GDLFHWMDETFLHNC----FSHTGQV---VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 121 ~nLp~~~te~~l~~~----f~~~G~v---~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
.|.+++-+-|-++.. +++||.. .++++.+-.. ..+|-+-|.|...- ++.+....+...++..++
T Consensus 118 T~~~~spsvD~~~~v~lP~l~~fG~~~~~~~l~v~rrG~--yP~GgG~V~~~~~~-----~~~l~~i~l~~~G~i~~i-- 188 (341)
T cd00875 118 TNSTGDPSVDSIRTATLPLLKKFGIPDEELELKILKRGV--APGGGGEVGFRCPV-----RKPLTPHLNDSPGRIKRI-- 188 (341)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccceEEEEEeccC--CCCCCEEEEEEecC-----cccccceeeccCCceEEE--
Confidence 466777777777765 5678863 4666665432 34455666665321 112222222212221111
Q ss_pred ccccCCCCccccCCCceEEeCCCCCCCCHHHH---HHHhcccCCCeeEEEEEec--CCCCCCccEEEEEeC
Q 019392 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSIL---QETFSSKYPSVKGAKVIID--SNTGRTKGYGFVRFG 259 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l---~~~F~e~~G~v~~v~i~~~--~~~~~~~g~afV~F~ 259 (341)
....|+.+||..+.+..+ ++.+. +++.-..|.+... .+.+.+.|++.+-+.
T Consensus 189 --------------rG~~~~~~l~~~va~r~~~~a~~~L~-~~~~dv~i~~~~~~~~~~~~~~G~gi~L~a 244 (341)
T cd00875 189 --------------RGVAYSTRVSPSIANRMIDAARGVLN-PFIPDVYIYTDVRKGDNSGKSPGFGISLVA 244 (341)
T ss_pred --------------EEEEEEccCCHHHHHHHHHHHHHHHH-hhCCCceEEEEecccccCCCCCCeEEEEEE
Confidence 126788899998877655 45554 4543223333221 234566777655443
No 294
>PRK10905 cell division protein DamX; Validated
Probab=23.45 E-value=1.4e+02 Score=26.91 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=38.4
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEE--EEEeCCHHHHHHHHHHhC
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYG--FVRFGDENERSRAMTEMN 272 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~a--fV~F~~~~~A~~Al~~l~ 272 (341)
..+|-|..+ .+++.|.++.. +.| +....+.....+|+.. |- +=.|.+.++|++|+..|-
T Consensus 247 ~YTLQL~A~---Ss~~~l~~fak-Klg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 247 HYTLQLSSS---SNYDNLNGWAK-KEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred ceEEEEEec---CCHHHHHHHHH-HcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCC
Confidence 345666554 45688888875 775 4555555444445432 33 336999999999998875
No 295
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=23.18 E-value=27 Score=36.05 Aligned_cols=7 Identities=0% Similarity=0.287 Sum_probs=0.0
Q ss_pred eEEEEec
Q 019392 159 YGFVEFY 165 (341)
Q Consensus 159 ~afV~f~ 165 (341)
|-|..|.
T Consensus 388 fYYQVY~ 394 (808)
T PF09770_consen 388 FYYQVYS 394 (808)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3343333
No 296
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.43 E-value=2.6e+02 Score=21.94 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 215 nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
.|+..+.++.|.++. |..|.|.+.. -.| -.+.|-|.+...+||+.+.
T Consensus 118 ~L~epl~~eRlqDi~-E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIA-ETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHH-HhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 578889999999999 5888777655 222 4567999999999998764
No 297
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.09 E-value=69 Score=18.54 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHHhcC
Q 019392 125 HWMDETFLHNCFSHTG 140 (341)
Q Consensus 125 ~~~te~~l~~~f~~~G 140 (341)
.+++++.|++.|...+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998754
No 298
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=21.91 E-value=1.7e+02 Score=26.43 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhc------CCcEEEEEEecCCCCCccceEEEEecC
Q 019392 126 WMDETFLHNCFSHT------GQVVNVKVIRNKQTGQSEGYGFVEFYS 166 (341)
Q Consensus 126 ~~te~~l~~~f~~~------G~v~~i~i~~~~~~g~~~g~afV~f~~ 166 (341)
..+++++.++|+.| |.+...++..-.. ..+||.+..
T Consensus 12 ~~~~~~f~~~le~~~~~~~~G~iv~G~V~~i~~-----~g~~Vdig~ 53 (318)
T PRK07400 12 GFTHEDFAALLDKYDYHFKPGDIVNGTVFSLEP-----RGALIDIGA 53 (318)
T ss_pred CCCHHHHHHHHHhhHhhcCCCCEEEEEEEEEEC-----CEEEEEECC
Confidence 45777888888654 7777777766432 457777754
No 299
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=21.54 E-value=96 Score=22.45 Aligned_cols=20 Identities=15% Similarity=0.405 Sum_probs=16.5
Q ss_pred cEEEEEeCCHHHHHHHHHHh
Q 019392 252 GYGFVRFGDENERSRAMTEM 271 (341)
Q Consensus 252 g~afV~F~~~~~A~~Al~~l 271 (341)
-|.+++|.+.++..+|...+
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 48999999999988887544
No 300
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=3.1e+02 Score=28.21 Aligned_cols=12 Identities=17% Similarity=-0.050 Sum_probs=6.2
Q ss_pred ccEEEEEeCCHH
Q 019392 251 KGYGFVRFGDEN 262 (341)
Q Consensus 251 ~g~afV~F~~~~ 262 (341)
--|+||-=.+..
T Consensus 295 avy~FliDVS~~ 306 (887)
T KOG1985|consen 295 AVYVFLIDVSIS 306 (887)
T ss_pred ceEEEEEEeehH
Confidence 346776544443
No 301
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.82 E-value=1.4e+02 Score=26.07 Aligned_cols=35 Identities=6% Similarity=0.022 Sum_probs=26.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR 149 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~ 149 (341)
.....|+|||++++..-|.+++...-.+.+..++.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 45688999999999999999998765554444433
No 302
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=20.68 E-value=2.4e+02 Score=22.39 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=37.1
Q ss_pred eEEEcCCC-CCCCHHHHHHHHHh-cCC-cEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCC
Q 019392 117 TIWIGDLF-HWMDETFLHNCFSH-TGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (341)
Q Consensus 117 ~l~v~nLp-~~~te~~l~~~f~~-~G~-v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~ 179 (341)
.+|+|+|. ...+-++|+..+.. |++ +.+++..+.+.. +.+.|+|..+.+|..-|..|..
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~----~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEPW----NSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccccC----ceEEEEEechHHHHHHHHHHhh
Confidence 46788887 22344455555544 332 233544444433 5799999999999988887754
No 303
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=20.56 E-value=53 Score=22.06 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=12.7
Q ss_pred CCCCCCeEEEcCCCCC
Q 019392 323 GESNNATIFVGALDSD 338 (341)
Q Consensus 323 ~~~~~~~l~V~nl~~~ 338 (341)
-...++++|||+||..
T Consensus 23 Ls~tSr~vflG~IP~~ 38 (67)
T PF15407_consen 23 LSLTSRRVFLGPIPEI 38 (67)
T ss_pred HHHcCceEEECCCChH
Confidence 3457899999999964
Done!